Query 000955
Match_columns 1210
No_of_seqs 233 out of 643
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 03:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.3 6.2E-13 2.1E-17 124.5 5.4 101 27-165 4-107 (111)
2 2ysm_A Myeloid/lymphoid or mix 99.3 6.3E-13 2.2E-17 124.4 5.3 91 90-211 7-98 (111)
3 3v43_A Histone acetyltransfera 99.3 3.1E-12 1.1E-16 120.7 7.4 100 90-211 5-106 (112)
4 2kwj_A Zinc finger protein DPF 99.2 1.5E-11 5E-16 116.7 6.7 97 92-211 3-102 (114)
5 2kwj_A Zinc finger protein DPF 99.0 9.5E-11 3.2E-15 111.1 3.7 92 31-157 2-105 (114)
6 3v43_A Histone acetyltransfera 99.0 1.4E-10 4.7E-15 109.6 4.6 95 29-157 4-109 (112)
7 4gne_A Histone-lysine N-methyl 98.9 5.3E-10 1.8E-14 106.3 5.5 78 26-132 11-89 (107)
8 4gne_A Histone-lysine N-methyl 98.9 1.9E-09 6.5E-14 102.5 5.9 83 91-211 16-98 (107)
9 1mm2_A MI2-beta; PHD, zinc fin 98.5 8.5E-08 2.9E-12 82.4 4.0 50 27-88 6-55 (61)
10 2l5u_A Chromodomain-helicase-D 98.4 9.9E-08 3.4E-12 82.0 3.1 53 25-89 6-58 (61)
11 1fp0_A KAP-1 corepressor; PHD 98.4 1.4E-07 4.8E-12 87.3 3.6 49 27-87 22-70 (88)
12 1xwh_A Autoimmune regulator; P 98.4 1.4E-07 4.6E-12 82.1 3.1 51 27-89 5-55 (66)
13 3u5n_A E3 ubiquitin-protein li 98.4 1.1E-07 3.7E-12 97.7 2.7 51 26-88 3-53 (207)
14 2puy_A PHD finger protein 21A; 98.3 1.9E-07 6.7E-12 79.5 2.8 51 27-89 2-52 (60)
15 3o36_A Transcription intermedi 98.3 2.9E-07 9.9E-12 92.8 3.3 49 28-88 2-50 (184)
16 2yql_A PHD finger protein 21A; 98.3 3.5E-07 1.2E-11 77.1 3.0 50 27-88 6-55 (56)
17 2lri_C Autoimmune regulator; Z 98.3 3.1E-07 1E-11 80.6 2.7 48 29-88 11-58 (66)
18 3asl_A E3 ubiquitin-protein li 98.2 7.9E-07 2.7E-11 78.6 4.7 52 149-211 11-63 (70)
19 2yt5_A Metal-response element- 98.2 7.2E-07 2.5E-11 76.7 3.5 54 27-89 3-61 (66)
20 2lbm_A Transcriptional regulat 98.2 4E-07 1.4E-11 90.5 1.6 56 23-87 56-115 (142)
21 2e6s_A E3 ubiquitin-protein li 98.2 1.5E-06 5.1E-11 78.3 5.1 51 150-211 20-71 (77)
22 3shb_A E3 ubiquitin-protein li 98.2 1.4E-06 4.7E-11 78.7 4.7 51 150-211 20-71 (77)
23 1wev_A Riken cDNA 1110020M19; 98.1 1.1E-06 3.8E-11 80.5 3.0 52 29-89 15-72 (88)
24 2ro1_A Transcription intermedi 98.0 2.7E-06 9.2E-11 87.0 4.1 48 30-89 2-49 (189)
25 2l43_A N-teminal domain from h 98.0 2.2E-06 7.4E-11 78.7 2.1 48 28-89 23-75 (88)
26 2e6r_A Jumonji/ARID domain-con 97.9 4E-06 1.4E-10 77.5 3.0 53 25-89 11-66 (92)
27 1weu_A Inhibitor of growth fam 97.9 9.2E-06 3.1E-10 75.6 5.1 45 29-88 35-84 (91)
28 3ql9_A Transcriptional regulat 97.9 3E-06 1E-10 83.2 1.4 57 23-88 50-110 (129)
29 3ask_A E3 ubiquitin-protein li 97.8 7E-06 2.4E-10 86.9 3.9 51 150-211 168-219 (226)
30 2ku3_A Bromodomain-containing 97.8 3.5E-06 1.2E-10 74.9 1.0 49 27-89 13-66 (71)
31 1f62_A Transcription factor WS 97.8 8E-06 2.7E-10 67.2 2.6 43 158-211 2-44 (51)
32 1wen_A Inhibitor of growth fam 97.8 1.3E-05 4.3E-10 71.3 4.0 44 30-88 16-64 (71)
33 1f62_A Transcription factor WS 97.7 7.8E-06 2.7E-10 67.3 1.8 45 32-88 2-49 (51)
34 1fp0_A KAP-1 corepressor; PHD 97.7 1.6E-05 5.3E-10 73.8 3.9 40 158-211 27-66 (88)
35 2lv9_A Histone-lysine N-methyl 97.7 1.6E-05 5.3E-10 74.1 3.5 52 23-87 23-74 (98)
36 2lri_C Autoimmune regulator; Z 97.7 1.3E-05 4.3E-10 70.5 2.6 41 157-211 13-53 (66)
37 2e6r_A Jumonji/ARID domain-con 97.7 2.3E-05 7.9E-10 72.4 4.3 51 150-211 9-60 (92)
38 2yql_A PHD finger protein 21A; 97.6 2.9E-05 1E-09 65.4 3.6 40 158-211 11-50 (56)
39 1xwh_A Autoimmune regulator; P 97.6 3.2E-05 1.1E-09 67.2 3.5 40 158-211 10-49 (66)
40 1mm2_A MI2-beta; PHD, zinc fin 97.6 3.5E-05 1.2E-09 66.2 3.6 40 158-211 11-50 (61)
41 2puy_A PHD finger protein 21A; 97.6 3.7E-05 1.3E-09 65.5 3.4 40 158-211 7-46 (60)
42 2k16_A Transcription initiatio 97.5 1.5E-05 5.3E-10 70.1 0.7 48 30-89 18-68 (75)
43 3uzu_A Ribosomal RNA small sub 97.5 3.5E-05 1.2E-09 82.5 3.0 155 510-669 18-196 (279)
44 2g6q_A Inhibitor of growth pro 97.5 2.6E-05 8.8E-10 67.7 1.4 45 30-89 11-60 (62)
45 3o36_A Transcription intermedi 97.5 5.3E-05 1.8E-09 76.4 3.8 40 158-211 6-45 (184)
46 2l5u_A Chromodomain-helicase-D 97.5 4E-05 1.4E-09 65.9 2.2 40 158-211 13-52 (61)
47 2e6s_A E3 ubiquitin-protein li 97.4 6.5E-05 2.2E-09 67.7 3.1 47 29-87 25-75 (77)
48 1wev_A Riken cDNA 1110020M19; 97.4 8.3E-05 2.8E-09 68.2 3.8 49 158-211 18-66 (88)
49 2vnf_A ING 4, P29ING4, inhibit 97.4 3.4E-05 1.2E-09 66.3 1.2 45 30-88 10-58 (60)
50 3u5n_A E3 ubiquitin-protein li 97.4 7.1E-05 2.4E-09 77.0 3.7 40 158-211 9-48 (207)
51 2ro1_A Transcription intermedi 97.4 7.2E-05 2.5E-09 76.6 3.4 40 158-211 4-43 (189)
52 3c6w_A P28ING5, inhibitor of g 97.4 4.3E-05 1.5E-09 65.6 1.2 44 30-88 9-57 (59)
53 2ar0_A M.ecoki, type I restric 97.3 0.00056 1.9E-08 79.3 10.6 152 482-637 101-316 (541)
54 3asl_A E3 ubiquitin-protein li 97.3 7.6E-05 2.6E-09 66.0 2.2 46 31-88 19-68 (70)
55 2jmi_A Protein YNG1, ING1 homo 97.3 9.8E-05 3.3E-09 68.7 3.0 45 30-88 26-75 (90)
56 2yt5_A Metal-response element- 97.3 0.00017 5.8E-09 62.0 3.8 48 157-211 7-55 (66)
57 3ask_A E3 ubiquitin-protein li 97.2 0.00015 5E-09 77.1 3.2 47 30-88 174-224 (226)
58 1we9_A PHD finger family prote 97.2 0.00021 7.1E-09 61.2 3.4 49 30-89 6-58 (64)
59 1wem_A Death associated transc 97.2 0.00015 5.1E-09 64.2 2.5 51 27-89 13-70 (76)
60 3ufb_A Type I restriction-modi 97.2 0.001 3.4E-08 77.1 9.9 46 512-559 196-241 (530)
61 1wew_A DNA-binding family prot 97.1 0.00014 4.6E-09 65.2 2.0 51 28-89 14-72 (78)
62 2f8l_A Hypothetical protein LM 97.1 0.00058 2E-08 73.6 7.3 122 511-636 104-259 (344)
63 3shb_A E3 ubiquitin-protein li 97.1 0.00019 6.6E-09 64.8 2.8 56 78-157 19-74 (77)
64 2ih2_A Modification methylase 97.1 0.00078 2.7E-08 73.1 7.7 118 510-636 16-167 (421)
65 1yub_A Ermam, rRNA methyltrans 97.0 0.00095 3.3E-08 68.5 6.9 124 510-642 5-136 (245)
66 2okc_A Type I restriction enzy 97.0 0.0012 4.3E-08 73.8 8.1 120 511-636 149-310 (445)
67 2ri7_A Nucleosome-remodeling f 97.0 0.00015 5.2E-09 72.1 0.7 49 29-89 7-59 (174)
68 1qam_A ERMC' methyltransferase 96.9 0.0014 4.9E-08 67.8 7.6 120 510-643 6-138 (244)
69 2xb1_A Pygopus homolog 2, B-ce 96.9 0.00037 1.3E-08 65.8 2.6 50 30-89 3-61 (105)
70 3khk_A Type I restriction-modi 96.9 0.0013 4.4E-08 76.6 7.4 121 511-637 223-399 (544)
71 2ku3_A Bromodomain-containing 96.8 0.0005 1.7E-08 61.1 2.5 43 158-211 18-60 (71)
72 3lkd_A Type I restriction-modi 96.7 0.0012 4.2E-08 76.8 5.9 126 510-637 194-362 (542)
73 1wee_A PHD finger family prote 96.7 0.00065 2.2E-08 59.8 2.3 48 29-89 15-66 (72)
74 2vpb_A Hpygo1, pygopus homolog 96.6 0.00052 1.8E-08 60.1 1.0 48 30-87 8-64 (65)
75 3ftd_A Dimethyladenosine trans 96.5 0.002 6.7E-08 67.6 5.4 152 510-670 7-175 (249)
76 2l43_A N-teminal domain from h 96.5 0.00067 2.3E-08 62.3 1.6 44 157-211 26-69 (88)
77 1wep_A PHF8; structural genomi 96.5 0.0016 5.6E-08 58.2 3.5 48 30-89 12-63 (79)
78 2lbm_A Transcriptional regulat 96.4 0.0013 4.4E-08 65.7 3.0 65 79-159 39-116 (142)
79 2k16_A Transcription initiatio 96.4 0.0015 5E-08 57.6 2.7 43 158-211 20-62 (75)
80 3tqs_A Ribosomal RNA small sub 96.3 0.00099 3.4E-08 70.4 1.4 152 510-669 5-178 (255)
81 3fut_A Dimethyladenosine trans 96.3 0.0058 2E-07 65.4 7.0 165 481-669 5-191 (271)
82 3s1s_A Restriction endonucleas 96.2 0.0048 1.6E-07 75.6 6.5 127 510-638 292-470 (878)
83 2lv9_A Histone-lysine N-methyl 96.0 0.0044 1.5E-07 57.8 4.2 39 161-211 32-70 (98)
84 2kgg_A Histone demethylase jar 95.9 0.004 1.4E-07 51.9 3.1 45 32-87 4-52 (52)
85 2rsd_A E3 SUMO-protein ligase 95.7 0.0041 1.4E-07 54.3 2.3 47 31-88 11-64 (68)
86 1x4i_A Inhibitor of growth pro 95.7 0.0032 1.1E-07 55.8 1.5 46 30-89 6-55 (70)
87 1wy7_A Hypothetical protein PH 95.5 0.009 3.1E-07 58.4 4.0 119 511-638 24-155 (207)
88 1wil_A KIAA1045 protein; ring 95.4 0.0052 1.8E-07 57.2 2.0 59 27-87 12-74 (89)
89 3o70_A PHD finger protein 13; 94.8 0.016 5.4E-07 51.1 3.1 45 30-88 19-66 (68)
90 2h1r_A Dimethyladenosine trans 94.8 0.023 8E-07 60.7 5.0 100 511-627 19-132 (299)
91 3kqi_A GRC5, PHD finger protei 94.7 0.009 3.1E-07 53.0 1.3 43 35-88 14-60 (75)
92 1ne2_A Hypothetical protein TA 94.5 0.019 6.7E-07 56.0 3.4 115 511-638 26-151 (200)
93 3lqh_A Histone-lysine N-methyl 94.3 0.02 6.7E-07 59.1 3.1 47 31-88 3-62 (183)
94 3ql9_A Transcriptional regulat 94.1 0.0072 2.5E-07 59.6 -0.7 45 158-211 59-105 (129)
95 1zq9_A Probable dimethyladenos 93.9 0.064 2.2E-06 56.9 6.0 102 510-624 4-120 (285)
96 3kv5_D JMJC domain-containing 93.8 0.016 5.5E-07 67.2 1.4 46 31-88 38-87 (488)
97 3tma_A Methyltransferase; thum 93.8 0.13 4.5E-06 55.5 8.4 146 482-636 149-320 (354)
98 3tm4_A TRNA (guanine N2-)-meth 93.7 0.055 1.9E-06 59.5 5.3 105 519-634 203-330 (373)
99 3o7a_A PHD finger protein 13 v 93.5 0.039 1.3E-06 45.9 2.8 40 35-87 8-50 (52)
100 3a1b_A DNA (cytosine-5)-methyl 93.5 0.023 8E-07 57.8 1.7 57 22-84 71-129 (159)
101 1wen_A Inhibitor of growth fam 93.4 0.056 1.9E-06 48.1 3.7 39 158-211 18-59 (71)
102 1qyr_A KSGA, high level kasuga 93.2 0.025 8.4E-07 59.7 1.5 143 517-670 5-173 (252)
103 3pur_A Lysine-specific demethy 93.2 0.039 1.3E-06 64.7 3.2 37 41-88 57-93 (528)
104 3p9n_A Possible methyltransfer 93.1 0.045 1.5E-06 53.1 3.0 117 514-633 22-152 (189)
105 1weu_A Inhibitor of growth fam 92.8 0.061 2.1E-06 50.2 3.3 39 158-211 38-79 (91)
106 1we9_A PHD finger family prote 92.2 0.075 2.6E-06 45.4 2.8 33 158-193 8-40 (64)
107 2ift_A Putative methylase HI07 92.1 0.11 3.8E-06 51.6 4.4 127 517-650 36-178 (201)
108 4bbq_A Lysine-specific demethy 92.1 0.029 1E-06 52.6 0.3 22 108-131 73-94 (117)
109 2vnf_A ING 4, P29ING4, inhibit 91.9 0.07 2.4E-06 45.8 2.3 39 158-211 12-53 (60)
110 1i4w_A Mitochondrial replicati 91.7 0.19 6.6E-06 56.1 6.1 124 511-643 29-195 (353)
111 2xb1_A Pygopus homolog 2, B-ce 91.0 0.12 4.2E-06 48.8 3.2 36 155-193 2-38 (105)
112 2ri7_A Nucleosome-remodeling f 91.0 0.051 1.7E-06 54.1 0.6 31 159-193 11-41 (174)
113 2pv0_B DNA (cytosine-5)-methyl 90.9 0.083 2.8E-06 60.0 2.3 35 24-58 87-122 (386)
114 3q87_B N6 adenine specific DNA 90.9 0.21 7.1E-06 48.4 4.7 81 521-609 9-90 (170)
115 3c6w_A P28ING5, inhibitor of g 90.8 0.11 3.7E-06 44.7 2.4 39 158-211 11-52 (59)
116 2fpo_A Methylase YHHF; structu 90.7 0.19 6.4E-06 50.0 4.3 123 523-652 43-178 (202)
117 3evz_A Methyltransferase; NYSG 90.7 1.3 4.5E-05 43.9 10.3 103 529-635 49-181 (230)
118 2g6q_A Inhibitor of growth pro 90.6 0.11 3.9E-06 45.0 2.4 39 158-211 13-54 (62)
119 3kv4_A PHD finger protein 8; e 90.6 0.063 2.2E-06 61.9 1.0 47 32-89 6-56 (447)
120 3gru_A Dimethyladenosine trans 90.5 0.17 5.9E-06 54.8 4.2 147 511-669 27-194 (295)
121 3dou_A Ribosomal RNA large sub 90.0 0.57 2E-05 46.8 7.2 63 518-587 9-73 (191)
122 4bbq_A Lysine-specific demethy 89.8 0.096 3.3E-06 49.2 1.3 24 171-194 71-94 (117)
123 1wil_A KIAA1045 protein; ring 89.7 0.048 1.7E-06 50.8 -0.7 33 91-131 16-48 (89)
124 3lqh_A Histone-lysine N-methyl 89.4 0.18 6.2E-06 52.0 3.0 35 158-192 4-38 (183)
125 1uwv_A 23S rRNA (uracil-5-)-me 89.2 0.68 2.3E-05 52.0 7.8 127 520-651 269-410 (433)
126 3k0b_A Predicted N6-adenine-sp 88.9 1.2 4.2E-05 49.8 9.5 70 482-553 146-219 (393)
127 1wee_A PHD finger family prote 88.7 0.33 1.1E-05 42.6 3.8 31 159-193 19-49 (72)
128 1wem_A Death associated transc 88.6 0.12 4.2E-06 45.6 1.1 31 158-193 18-48 (76)
129 2vpb_A Hpygo1, pygopus homolog 88.4 0.14 4.9E-06 44.8 1.3 33 158-193 10-43 (65)
130 3ldu_A Putative methylase; str 88.3 1.3 4.3E-05 49.5 9.0 71 483-555 141-215 (385)
131 2kgg_A Histone demethylase jar 88.2 0.27 9.4E-06 40.9 2.8 33 158-193 4-37 (52)
132 1nv8_A HEMK protein; class I a 88.1 0.86 2.9E-05 48.4 7.3 76 534-611 122-206 (284)
133 2jmi_A Protein YNG1, ING1 homo 88.1 0.3 1E-05 45.5 3.3 39 158-211 28-69 (90)
134 3o70_A PHD finger protein 13; 88.0 0.24 8.1E-06 43.6 2.5 30 159-193 22-51 (68)
135 3ldg_A Putative uncharacterize 87.7 0.36 1.2E-05 54.1 4.3 69 482-552 139-211 (384)
136 2ozv_A Hypothetical protein AT 87.5 0.44 1.5E-05 49.5 4.6 104 533-636 34-173 (260)
137 3lpm_A Putative methyltransfer 87.3 0.46 1.6E-05 48.7 4.5 77 533-610 46-132 (259)
138 1o9g_A RRNA methyltransferase; 86.9 0.82 2.8E-05 46.4 6.0 35 522-556 36-72 (250)
139 1wep_A PHF8; structural genomi 86.8 0.2 6.8E-06 44.8 1.3 30 161-193 16-45 (79)
140 2fhp_A Methylase, putative; al 84.9 0.4 1.4E-05 45.5 2.4 128 517-653 27-173 (187)
141 3lbf_A Protein-L-isoaspartate 84.8 2.7 9.1E-05 41.0 8.3 44 511-556 55-98 (210)
142 2b3t_A Protein methyltransfera 83.7 0.79 2.7E-05 47.5 4.2 72 534-610 108-189 (276)
143 3v97_A Ribosomal RNA large sub 83.5 1 3.6E-05 54.0 5.7 70 482-553 135-208 (703)
144 1ej0_A FTSJ; methyltransferase 83.2 6.5 0.00022 36.0 9.7 84 520-608 8-99 (180)
145 2pv0_B DNA (cytosine-5)-methyl 83.1 0.17 5.7E-06 57.6 -1.2 92 90-212 50-143 (386)
146 2plw_A Ribosomal RNA methyltra 82.5 0.91 3.1E-05 43.9 3.9 65 519-587 7-74 (201)
147 2lq6_A Bromodomain-containing 82.5 0.35 1.2E-05 44.4 1.0 34 27-60 14-50 (87)
148 3rsn_A SET1/ASH2 histone methy 82.1 0.61 2.1E-05 48.3 2.6 24 35-59 9-36 (177)
149 1wew_A DNA-binding family prot 81.3 0.44 1.5E-05 42.6 1.1 30 159-193 19-50 (78)
150 4dzr_A Protein-(glutamine-N5) 81.3 0.54 1.9E-05 45.2 1.8 76 534-611 29-115 (215)
151 2jjq_A Uncharacterized RNA met 80.7 1.1 3.9E-05 50.6 4.3 100 523-633 279-386 (425)
152 3uwp_A Histone-lysine N-methyl 80.4 1.2 4.2E-05 51.4 4.5 71 480-555 119-193 (438)
153 3jwh_A HEN1; methyltransferase 80.2 0.97 3.3E-05 44.5 3.2 148 521-706 17-184 (217)
154 1x4i_A Inhibitor of growth pro 80.2 0.66 2.3E-05 41.1 1.8 36 162-211 11-49 (70)
155 3o7a_A PHD finger protein 13 v 79.5 0.92 3.1E-05 37.6 2.4 29 161-193 8-36 (52)
156 2r6z_A UPF0341 protein in RSP 79.4 1.4 4.9E-05 46.5 4.4 105 533-644 81-227 (258)
157 3a27_A TYW2, uncharacterized p 79.3 1.9 6.6E-05 45.2 5.3 71 533-611 117-200 (272)
158 2px2_A Genome polyprotein [con 79.2 1.1 3.7E-05 49.0 3.4 90 420-556 5-94 (269)
159 3k6r_A Putative transferase PH 78.8 0.57 2E-05 50.5 1.2 29 527-555 117-145 (278)
160 1dus_A MJ0882; hypothetical pr 78.8 6.1 0.00021 37.1 8.0 120 503-635 17-159 (194)
161 2frn_A Hypothetical protein PH 78.8 1.5 5.3E-05 45.9 4.4 81 528-612 118-207 (278)
162 2rsd_A E3 SUMO-protein ligase 78.7 1 3.5E-05 39.3 2.5 28 161-192 14-43 (68)
163 3jwg_A HEN1, methyltransferase 78.7 1.7 5.8E-05 42.7 4.4 149 519-705 15-183 (219)
164 1i1n_A Protein-L-isoaspartate 78.0 3.1 0.00011 41.2 6.1 49 509-557 51-99 (226)
165 2ku7_A MLL1 PHD3-CYP33 RRM chi 77.8 0.65 2.2E-05 43.0 1.1 37 41-88 1-43 (140)
166 1ws6_A Methyltransferase; stru 77.6 2.2 7.5E-05 39.7 4.6 39 517-555 23-61 (171)
167 4dcm_A Ribosomal RNA large sub 76.6 1.3 4.5E-05 49.0 3.3 96 534-633 221-333 (375)
168 2nyu_A Putative ribosomal RNA 76.1 2.3 8E-05 40.8 4.4 38 519-557 7-44 (196)
169 3dmg_A Probable ribosomal RNA 75.7 8.7 0.0003 42.8 9.4 105 519-632 217-338 (381)
170 2p41_A Type II methyltransfera 75.5 6.3 0.00021 42.6 8.0 37 518-556 67-103 (305)
171 3kv5_D JMJC domain-containing 75.2 0.82 2.8E-05 53.2 1.2 30 161-193 41-70 (488)
172 2h00_A Methyltransferase 10 do 74.6 3.3 0.00011 41.9 5.3 23 535-557 65-87 (254)
173 3kqi_A GRC5, PHD finger protei 74.2 0.77 2.6E-05 40.7 0.5 30 161-193 14-43 (75)
174 3eey_A Putative rRNA methylase 73.0 3.2 0.00011 40.1 4.6 27 531-557 18-44 (197)
175 2pxx_A Uncharacterized protein 72.9 2.5 8.6E-05 40.7 3.8 76 525-608 32-118 (215)
176 3frh_A 16S rRNA methylase; met 72.4 6.7 0.00023 42.6 7.2 127 513-653 81-227 (253)
177 3dxy_A TRNA (guanine-N(7)-)-me 71.8 1.2 4E-05 45.4 1.3 96 531-630 30-146 (218)
178 2pbf_A Protein-L-isoaspartate 70.8 5.7 0.00019 39.3 5.9 51 507-557 52-102 (227)
179 3bt7_A TRNA (uracil-5-)-methyl 70.5 4.4 0.00015 44.4 5.5 33 523-555 200-233 (369)
180 3a1b_A DNA (cytosine-5)-methyl 70.2 1.4 4.9E-05 45.0 1.4 50 90-154 79-128 (159)
181 3gcz_A Polyprotein; flavivirus 70.0 2.5 8.4E-05 46.5 3.3 34 519-554 76-109 (282)
182 3evf_A RNA-directed RNA polyme 70.0 2.5 8.5E-05 46.4 3.3 35 519-555 60-94 (277)
183 2oxt_A Nucleoside-2'-O-methylt 69.9 2.3 7.9E-05 45.1 3.0 37 518-556 59-95 (265)
184 2yxe_A Protein-L-isoaspartate 69.8 8.4 0.00029 37.7 6.8 45 511-557 55-99 (215)
185 2b9e_A NOL1/NOP2/SUN domain fa 69.6 6.6 0.00022 42.7 6.5 25 533-557 100-124 (309)
186 1vbf_A 231AA long hypothetical 69.4 4.9 0.00017 39.8 5.0 43 512-556 49-91 (231)
187 1jg1_A PIMT;, protein-L-isoasp 68.6 17 0.00057 36.5 8.8 45 511-557 69-113 (235)
188 1r18_A Protein-L-isoaspartate( 68.4 4.7 0.00016 40.2 4.7 48 511-558 60-107 (227)
189 2qm3_A Predicted methyltransfe 67.8 6.3 0.00022 43.2 6.0 117 511-633 147-278 (373)
190 1g55_A DNA cytosine methyltran 67.5 3.7 0.00013 45.0 4.1 83 538-631 4-117 (343)
191 2esr_A Methyltransferase; stru 67.3 4.6 0.00016 38.3 4.2 105 521-635 18-140 (177)
192 3e05_A Precorrin-6Y C5,15-meth 65.4 12 0.00041 36.5 6.8 38 517-556 24-61 (204)
193 3g7u_A Cytosine-specific methy 65.2 6 0.0002 44.2 5.2 83 538-631 4-117 (376)
194 2pwy_A TRNA (adenine-N(1)-)-me 64.4 25 0.00086 35.1 9.1 103 522-636 85-201 (258)
195 2yxd_A Probable cobalt-precorr 64.0 8.1 0.00028 36.0 5.1 101 515-634 17-132 (183)
196 2wa2_A Non-structural protein 62.5 3.7 0.00013 43.8 2.8 36 519-556 68-103 (276)
197 4ap4_A E3 ubiquitin ligase RNF 61.6 0.89 3E-05 41.8 -1.9 60 117-193 31-109 (133)
198 1qbj_A Protein (double-strande 61.5 8.2 0.00028 34.9 4.5 48 402-472 7-56 (81)
199 3gdh_A Trimethylguanosine synt 61.3 2 6.8E-05 43.0 0.5 78 522-611 66-158 (241)
200 3pur_A Lysine-specific demethy 60.7 8.1 0.00028 45.8 5.4 22 172-193 55-76 (528)
201 2c7p_A Modification methylase 59.8 14 0.00047 40.6 6.7 81 538-632 13-119 (327)
202 2lnb_A Z-DNA-binding protein 1 59.4 3.6 0.00012 38.0 1.8 35 400-434 14-48 (80)
203 3id6_C Fibrillarin-like rRNA/T 59.4 18 0.00063 37.9 7.3 35 524-558 64-99 (232)
204 3eld_A Methyltransferase; flav 59.1 5.5 0.00019 44.2 3.5 90 420-556 13-102 (300)
205 2ku7_A MLL1 PHD3-CYP33 RRM chi 59.1 2 6.8E-05 39.7 0.0 20 174-193 1-20 (140)
206 3ubt_Y Modification methylase 59.0 15 0.00051 39.0 6.7 82 538-631 2-108 (331)
207 2d8s_A Cellular modulator of i 57.5 3.6 0.00012 36.9 1.4 38 91-131 16-53 (80)
208 2pjd_A Ribosomal RNA small sub 56.9 5.1 0.00018 43.2 2.8 100 523-633 186-302 (343)
209 3c0k_A UPF0064 protein YCCW; P 56.6 4.8 0.00016 44.3 2.5 100 504-608 187-304 (396)
210 3hp7_A Hemolysin, putative; st 56.0 25 0.00087 38.3 7.9 119 508-634 64-187 (291)
211 1iym_A EL5; ring-H2 finger, ub 55.0 6.4 0.00022 31.3 2.4 15 117-131 26-40 (55)
212 2yxl_A PH0851 protein, 450AA l 54.5 28 0.00095 39.3 8.2 25 533-557 257-281 (450)
213 2lq6_A Bromodomain-containing 54.1 4.1 0.00014 37.5 1.2 32 92-129 19-50 (87)
214 1ve3_A Hypothetical protein PH 53.9 12 0.0004 36.6 4.5 37 520-556 23-59 (227)
215 2jtn_A LIM domain-binding prot 53.7 11 0.00037 37.6 4.3 65 30-100 60-129 (182)
216 3mb5_A SAM-dependent methyltra 53.6 53 0.0018 33.0 9.3 81 519-608 79-173 (255)
217 1nt2_A Fibrillarin-like PRE-rR 53.6 11 0.00038 38.0 4.4 55 500-557 20-79 (210)
218 3d2l_A SAM-dependent methyltra 52.2 8.4 0.00029 38.0 3.2 33 523-555 21-53 (243)
219 3kr9_A SAM-dependent methyltra 50.6 11 0.00039 39.5 4.1 114 531-652 11-140 (225)
220 3p8z_A Mtase, non-structural p 50.6 19 0.00066 39.4 5.8 145 420-625 11-168 (267)
221 2ct0_A Non-SMC element 1 homol 50.2 5.8 0.0002 35.6 1.5 34 90-132 15-48 (74)
222 3lkz_A Non-structural protein 49.1 11 0.00038 42.2 3.8 107 417-574 23-129 (321)
223 2b25_A Hypothetical protein; s 48.9 47 0.0016 35.3 8.5 41 514-556 86-126 (336)
224 1jsx_A Glucose-inhibited divis 48.3 49 0.0017 31.9 7.9 34 522-556 51-86 (207)
225 4gek_A TRNA (CMO5U34)-methyltr 48.2 9.9 0.00034 39.9 3.1 36 522-557 57-92 (261)
226 3p2e_A 16S rRNA methylase; met 47.8 26 0.00088 35.7 6.1 80 529-610 18-110 (225)
227 3hm2_A Precorrin-6Y C5,15-meth 47.4 14 0.00047 34.7 3.7 40 515-556 7-46 (178)
228 3kv4_A PHD finger protein 8; e 46.9 4.7 0.00016 46.6 0.5 30 161-193 9-38 (447)
229 3bkx_A SAM-dependent methyltra 46.5 69 0.0024 32.3 8.9 49 518-571 28-76 (275)
230 2igt_A SAM dependent methyltra 46.4 5.7 0.0002 43.3 1.1 22 534-555 152-173 (332)
231 3htx_A HEN1; HEN1, small RNA m 46.1 24 0.00083 44.4 6.5 36 519-556 707-742 (950)
232 3qv2_A 5-cytosine DNA methyltr 45.9 16 0.00056 40.1 4.6 111 538-665 12-167 (327)
233 3rsn_A SET1/ASH2 histone methy 45.2 8.9 0.00031 39.8 2.2 30 161-193 9-38 (177)
234 3ege_A Putative methyltransfer 45.1 47 0.0016 33.8 7.5 102 521-635 22-133 (261)
235 2cup_A Skeletal muscle LIM-pro 45.0 14 0.00048 33.0 3.2 67 28-100 3-76 (101)
236 1x19_A CRTF-related protein; m 44.5 72 0.0025 34.2 9.1 96 521-627 178-288 (359)
237 3opn_A Putative hemolysin; str 44.0 46 0.0016 34.3 7.3 44 507-556 15-58 (232)
238 3njr_A Precorrin-6Y methylase; 44.0 26 0.0009 34.8 5.3 40 515-556 37-76 (204)
239 1o54_A SAM-dependent O-methylt 43.8 52 0.0018 33.9 7.7 100 522-635 101-215 (277)
240 3mti_A RRNA methylase; SAM-dep 43.7 15 0.00053 34.9 3.5 27 529-555 16-42 (185)
241 3lcv_B Sisomicin-gentamicin re 43.6 19 0.00066 39.7 4.6 128 513-653 107-257 (281)
242 2r3s_A Uncharacterized protein 42.7 39 0.0013 35.4 6.6 100 521-627 151-264 (335)
243 2yx1_A Hypothetical protein MJ 42.4 12 0.0004 40.6 2.7 21 532-552 192-212 (336)
244 3dli_A Methyltransferase; PSI- 41.8 24 0.00083 35.2 4.7 37 520-556 26-62 (240)
245 1sqg_A SUN protein, FMU protei 41.6 11 0.00037 42.1 2.4 43 513-557 226-268 (429)
246 1l3i_A Precorrin-6Y methyltran 41.1 22 0.00076 33.2 4.0 39 516-556 16-54 (192)
247 1i9g_A Hypothetical protein RV 40.5 90 0.0031 31.7 8.7 37 519-557 85-121 (280)
248 3nw0_A Non-structural maintena 40.4 9.6 0.00033 40.5 1.6 33 90-131 180-212 (238)
249 1yzh_A TRNA (guanine-N(7)-)-me 40.3 17 0.0006 35.8 3.4 24 533-556 39-62 (214)
250 3grz_A L11 mtase, ribosomal pr 39.6 23 0.00077 34.4 4.0 101 522-632 47-157 (205)
251 1yb2_A Hypothetical protein TA 39.2 69 0.0024 33.1 7.7 31 525-557 102-132 (275)
252 2as0_A Hypothetical protein PH 38.8 14 0.00046 40.7 2.5 30 527-556 209-238 (396)
253 2heo_A Z-DNA binding protein 1 38.6 32 0.0011 29.4 4.3 29 405-433 10-38 (67)
254 1dl5_A Protein-L-isoaspartate 38.4 25 0.00086 37.3 4.4 42 514-557 56-97 (317)
255 1oyi_A Double-stranded RNA-bin 38.3 23 0.00077 32.7 3.5 44 404-472 16-59 (82)
256 2ecm_A Ring finger and CHY zin 38.0 9.4 0.00032 30.3 0.8 15 117-131 26-40 (55)
257 3gnl_A Uncharacterized protein 37.8 24 0.00084 37.6 4.2 101 529-635 15-126 (244)
258 4h0n_A DNMT2; SAH binding, tra 37.5 23 0.0008 39.0 4.1 85 538-632 5-118 (333)
259 2ect_A Ring finger protein 126 36.7 13 0.00044 31.7 1.5 43 92-158 17-59 (78)
260 3dpl_R Ring-box protein 1; ubi 36.3 7.2 0.00025 36.7 -0.1 15 117-131 72-86 (106)
261 4fsd_A Arsenic methyltransfera 36.2 24 0.00082 38.6 3.9 91 533-627 81-196 (383)
262 1m6y_A S-adenosyl-methyltransf 35.5 26 0.00088 38.1 4.0 37 519-557 12-48 (301)
263 2rgt_A Fusion of LIM/homeobox 35.5 16 0.00053 36.1 2.1 64 30-100 6-75 (169)
264 2kiz_A E3 ubiquitin-protein li 35.4 15 0.00051 30.6 1.7 27 30-57 14-43 (69)
265 2ecl_A Ring-box protein 2; RNF 35.2 7 0.00024 34.4 -0.4 15 117-131 47-61 (81)
266 2jt1_A PEFI protein; solution 35.0 37 0.0013 30.5 4.2 30 403-432 2-36 (77)
267 1g8a_A Fibrillarin-like PRE-rR 35.0 1.2E+02 0.0041 29.9 8.4 35 523-557 60-95 (227)
268 3hem_A Cyclopropane-fatty-acyl 34.9 34 0.0012 35.5 4.6 34 521-556 60-93 (302)
269 3bgv_A MRNA CAP guanine-N7 met 34.8 25 0.00084 36.9 3.6 38 518-555 17-54 (313)
270 3ggd_A SAM-dependent methyltra 34.8 33 0.0011 34.1 4.4 35 522-556 43-77 (245)
271 3l8d_A Methyltransferase; stru 34.7 22 0.00076 35.0 3.1 33 524-556 42-74 (242)
272 3lec_A NADB-rossmann superfami 34.3 32 0.0011 36.4 4.3 118 529-653 15-147 (230)
273 3ou2_A SAM-dependent methyltra 34.2 21 0.0007 34.5 2.7 34 522-556 34-67 (218)
274 1x4j_A Ring finger protein 38; 34.2 4.9 0.00017 34.3 -1.5 15 117-131 43-57 (75)
275 2nxc_A L11 mtase, ribosomal pr 33.9 32 0.0011 35.5 4.2 29 527-555 112-140 (254)
276 3bxo_A N,N-dimethyltransferase 33.8 35 0.0012 33.5 4.3 35 523-557 28-62 (239)
277 4df3_A Fibrillarin-like rRNA/T 33.7 22 0.00075 37.6 3.0 37 521-557 61-99 (233)
278 3ujc_A Phosphoethanolamine N-m 33.2 57 0.0019 32.4 5.8 36 520-557 42-77 (266)
279 1gd8_A 50S ribosomal protein L 32.6 18 0.0006 35.5 1.9 41 438-492 42-82 (118)
280 2dk8_A DNA-directed RNA polyme 32.4 31 0.0011 31.8 3.4 27 404-430 13-39 (81)
281 1xmk_A Double-stranded RNA-spe 32.2 42 0.0015 30.5 4.2 47 404-475 10-57 (79)
282 3bzb_A Uncharacterized protein 31.8 30 0.001 36.3 3.6 22 534-555 78-99 (281)
283 2yvl_A TRMI protein, hypotheti 31.6 1.7E+02 0.0057 29.0 8.8 33 522-556 80-112 (248)
284 2dbb_A Putative HTH-type trans 31.6 76 0.0026 30.1 6.1 114 402-560 7-131 (151)
285 1nkv_A Hypothetical protein YJ 31.4 41 0.0014 33.5 4.4 37 519-557 22-58 (256)
286 3pl5_A SMU_165, putative uncha 31.3 90 0.0031 34.5 7.5 91 459-559 165-285 (320)
287 2l0b_A E3 ubiquitin-protein li 31.2 8 0.00027 34.6 -0.7 15 117-131 60-74 (91)
288 3ajd_A Putative methyltransfer 31.0 27 0.00091 36.5 3.1 45 511-557 61-105 (274)
289 3fzg_A 16S rRNA methylase; met 30.8 28 0.00096 36.7 3.2 126 514-653 25-173 (200)
290 3pfq_A PKC-B, PKC-beta, protei 30.6 23 0.00079 41.9 2.8 95 30-131 48-149 (674)
291 4ayc_A E3 ubiquitin-protein li 30.5 11 0.00036 36.2 -0.0 15 117-131 70-84 (138)
292 2fk8_A Methoxy mycolic acid sy 30.2 39 0.0013 35.3 4.2 36 520-557 77-112 (318)
293 1kpg_A CFA synthase;, cyclopro 30.1 69 0.0024 32.7 5.9 35 521-557 52-86 (287)
294 2ecv_A Tripartite motif-contai 30.1 27 0.00091 29.6 2.4 15 117-131 36-50 (85)
295 3axs_A Probable N(2),N(2)-dime 30.0 14 0.00047 41.8 0.8 94 535-634 52-158 (392)
296 1eg2_A Modification methylase 29.8 27 0.00094 38.1 3.0 31 515-547 223-254 (319)
297 1jm7_A BRCA1, breast cancer ty 29.8 21 0.00072 32.2 1.8 15 117-131 38-52 (112)
298 1tw3_A COMT, carminomycin 4-O- 29.6 1E+02 0.0035 32.8 7.3 94 523-627 173-281 (360)
299 4a0k_B E3 ubiquitin-protein li 29.6 11 0.00038 36.3 0.0 15 117-131 83-97 (117)
300 1v87_A Deltex protein 2; ring- 29.6 13 0.00044 34.0 0.4 15 117-131 60-74 (114)
301 1vyx_A ORF K3, K3RING; zinc-bi 29.5 9.7 0.00033 32.5 -0.4 37 90-131 6-42 (60)
302 3hnr_A Probable methyltransfer 29.1 2E+02 0.0068 27.8 8.8 33 522-556 34-66 (220)
303 2lk0_A RNA-binding protein 5; 29.0 18 0.00061 27.9 1.0 23 78-100 3-29 (32)
304 3e23_A Uncharacterized protein 28.9 38 0.0013 32.9 3.6 31 526-556 34-64 (211)
305 1g60_A Adenine-specific methyl 28.9 30 0.001 36.0 3.0 25 531-555 208-232 (260)
306 2p7i_A Hypothetical protein; p 28.7 45 0.0015 32.5 4.1 40 515-555 23-62 (250)
307 2ecj_A Tripartite motif-contai 28.7 29 0.00098 27.6 2.3 15 117-131 32-46 (58)
308 2ipx_A RRNA 2'-O-methyltransfe 28.4 1.1E+02 0.0037 30.5 6.9 26 532-557 74-99 (233)
309 2ckl_B Ubiquitin ligase protei 28.1 15 0.00051 35.9 0.6 32 91-131 55-86 (165)
310 1vl5_A Unknown conserved prote 28.1 32 0.0011 34.7 3.0 38 516-555 20-57 (260)
311 2zig_A TTHA0409, putative modi 27.9 42 0.0014 35.6 4.0 40 513-555 214-255 (297)
312 3lrq_A E3 ubiquitin-protein li 27.9 12 0.00042 33.9 -0.1 31 92-131 24-54 (100)
313 2p35_A Trans-aconitate 2-methy 27.5 64 0.0022 32.1 5.0 47 507-557 9-55 (259)
314 3dh0_A SAM dependent methyltra 27.3 58 0.002 31.7 4.6 34 522-557 26-59 (219)
315 2o57_A Putative sarcosine dime 27.2 52 0.0018 33.8 4.5 38 520-557 65-104 (297)
316 3pfq_A PKC-B, PKC-beta, protei 27.2 31 0.0011 40.8 3.1 80 109-193 64-148 (674)
317 1xdz_A Methyltransferase GIDB; 27.2 1.3E+02 0.0045 30.2 7.3 22 534-555 69-90 (240)
318 3k1l_B Fancl; UBC, ring, RWD, 27.0 41 0.0014 38.5 3.8 41 90-132 308-348 (381)
319 3cgg_A SAM-dependent methyltra 26.5 13 0.00046 34.8 -0.1 25 532-556 43-67 (195)
320 1ixk_A Methyltransferase; open 26.5 47 0.0016 35.6 4.1 31 525-557 110-140 (315)
321 3if2_A Aminotransferase; YP_26 26.4 19 0.00065 38.9 1.1 54 506-560 1-59 (444)
322 2ysj_A Tripartite motif-contai 26.1 16 0.00056 29.9 0.4 15 117-131 37-51 (63)
323 2oyr_A UPF0341 protein YHIQ; a 25.9 62 0.0021 34.5 4.8 23 533-555 84-108 (258)
324 3iv6_A Putative Zn-dependent a 25.5 36 0.0012 36.3 3.0 35 519-555 31-65 (261)
325 3fl2_A E3 ubiquitin-protein li 25.4 14 0.00048 34.5 -0.2 15 117-131 69-83 (124)
326 2dul_A N(2),N(2)-dimethylguano 25.3 22 0.00077 39.6 1.4 22 535-556 47-68 (378)
327 3pfg_A N-methyltransferase; N, 25.3 47 0.0016 33.5 3.6 34 522-555 37-70 (263)
328 3l11_A E3 ubiquitin-protein li 25.2 23 0.00077 32.6 1.2 15 117-131 32-46 (115)
329 3dtn_A Putative methyltransfer 25.2 2.2E+02 0.0077 27.8 8.4 27 531-557 40-66 (234)
330 2ecw_A Tripartite motif-contai 25.0 25 0.00084 29.8 1.3 15 117-131 36-50 (85)
331 1wzn_A SAM-dependent methyltra 24.9 67 0.0023 32.0 4.6 22 534-555 40-61 (252)
332 3lup_A DEGV family protein; PS 24.6 1.5E+02 0.0053 31.9 7.6 92 459-559 130-252 (285)
333 3egl_A DEGV family protein; al 24.5 1.3E+02 0.0046 32.3 7.1 93 458-559 108-230 (277)
334 1rut_X Flinc4, fusion protein 24.5 25 0.00087 35.2 1.5 67 28-100 3-79 (188)
335 3tka_A Ribosomal RNA small sub 24.1 46 0.0016 37.7 3.6 46 520-570 44-89 (347)
336 3mq2_A 16S rRNA methyltransfer 24.1 50 0.0017 32.3 3.5 24 533-556 25-48 (218)
337 3m70_A Tellurite resistance pr 23.9 1.9E+02 0.0064 29.6 7.8 22 535-556 120-141 (286)
338 2yur_A Retinoblastoma-binding 23.8 27 0.00091 29.9 1.3 15 117-131 33-47 (74)
339 3i4p_A Transcriptional regulat 23.8 1.4E+02 0.0048 29.0 6.6 113 405-561 3-128 (162)
340 2xyq_A Putative 2'-O-methyl tr 23.7 2.8E+02 0.0095 30.1 9.5 65 520-589 45-119 (290)
341 3bus_A REBM, methyltransferase 23.6 1E+02 0.0034 31.1 5.7 41 516-556 40-82 (273)
342 3fdj_A DEGV family protein; GU 23.5 1.4E+02 0.0049 32.0 7.1 92 459-559 125-246 (278)
343 3kkz_A Uncharacterized protein 23.4 66 0.0022 32.6 4.3 80 520-608 32-125 (267)
344 3g5t_A Trans-aconitate 3-methy 23.4 53 0.0018 34.1 3.6 52 502-557 7-58 (299)
345 2pn6_A ST1022, 150AA long hypo 23.4 1.4E+02 0.0048 28.1 6.3 114 405-560 3-126 (150)
346 2yqz_A Hypothetical protein TT 23.3 62 0.0021 32.2 4.0 36 520-555 21-59 (263)
347 2ysl_A Tripartite motif-contai 23.2 28 0.00096 29.1 1.3 15 117-131 37-51 (73)
348 3gwz_A MMCR; methyltransferase 22.8 2.1E+02 0.0072 31.0 8.3 73 522-605 191-277 (369)
349 3g7q_A Valine-pyruvate aminotr 22.6 46 0.0016 35.4 3.1 53 506-559 1-57 (417)
350 3gu3_A Methyltransferase; alph 22.4 66 0.0022 33.2 4.1 38 518-556 6-43 (284)
351 1u2z_A Histone-lysine N-methyl 22.4 81 0.0028 36.2 5.2 41 512-556 223-263 (433)
352 2xqn_T Testin, TESS; metal-bin 22.0 36 0.0012 31.6 1.9 66 29-100 2-73 (126)
353 2ecy_A TNF receptor-associated 21.9 30 0.001 28.6 1.2 15 117-131 32-46 (66)
354 2b78_A Hypothetical protein SM 21.9 86 0.0029 34.7 5.1 48 505-555 179-232 (385)
355 2y43_A E3 ubiquitin-protein li 21.4 28 0.00094 31.1 0.9 15 117-131 40-54 (99)
356 2zjr_K 50S ribosomal protein L 21.3 30 0.001 33.9 1.2 40 439-492 43-82 (116)
357 2p0t_A UPF0307 protein pspto_4 21.3 29 0.001 35.9 1.2 33 456-496 83-115 (176)
358 2ct2_A Tripartite motif protei 21.1 26 0.0009 30.1 0.7 15 117-131 36-50 (88)
359 1qzz_A RDMB, aclacinomycin-10- 21.1 1.5E+02 0.005 31.7 6.6 70 522-602 171-254 (374)
360 1chc_A Equine herpes virus-1 r 20.9 20 0.00067 29.7 -0.1 15 117-131 23-37 (68)
361 3fys_A Protein DEGV; fatty aci 20.9 1.8E+02 0.0063 32.0 7.4 91 459-559 160-283 (315)
362 3sm3_A SAM-dependent methyltra 20.7 44 0.0015 32.5 2.3 28 529-556 24-51 (235)
363 4dkj_A Cytosine-specific methy 20.7 1.7E+02 0.0057 33.3 7.2 80 583-666 112-226 (403)
364 3f4k_A Putative methyltransfer 20.2 95 0.0032 30.9 4.6 35 522-557 34-68 (257)
365 3m33_A Uncharacterized protein 20.2 52 0.0018 32.7 2.8 26 531-556 44-69 (226)
366 3ocj_A Putative exported prote 20.0 94 0.0032 32.4 4.8 101 525-632 108-225 (305)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.34 E-value=6.2e-13 Score=124.51 Aligned_cols=101 Identities=26% Similarity=0.717 Sum_probs=77.5
Q ss_pred cccCcccccccCCCCe---eccccccCCccccccccCcccccccCCCChhhhhccccccccchhhccccccccCCCCCCC
Q 000955 27 ELFDSVCSFCDNGGDL---LCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYKQHQCFACGKLGSSD 103 (1210)
Q Consensus 27 DlnDdVCaIC~dGGEL---LCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~gQHqCFVCGqlGSSD 103 (1210)
+.++++|.+|+++|++ |+|+ .|.++||+.|+. +.+.. + +...|+|++|. .|.+|++.+..
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~--------~~~~~--~-~~~~W~C~~C~----~C~~C~~~~~~- 66 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLD--------IAVTP--L-KRAGWQCPECK----VCQNCKQSGED- 66 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTT--------CCCCT--T-TSTTCCCTTTC----CCTTTCCCSCC-
T ss_pred CCCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhC--------Ccccc--c-cccCccCCcCC----cccccCccCCC-
Confidence 4568999999999976 9999 699999999533 33322 2 35789999997 69999988742
Q ss_pred CCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCccccccCCC
Q 000955 104 KETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHKCCICKQG 165 (1210)
Q Consensus 104 K~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH~C~vCkks 165 (1210)
..++.|+ .|.+.||..|+.+.+.. +.. ..|+|| .|..|+.+
T Consensus 67 ----~~ll~Cd--~C~~~yH~~Cl~ppl~~------------~P~-g~W~C~--~C~~c~~g 107 (111)
T 2ysm_A 67 ----SKMLVCD--TCDKGYHTFCLQPVMKS------------VPT-NGWKCK--NCRICISG 107 (111)
T ss_dssp ----TTEEECS--SSCCEEEGGGSSSCCSS------------CCS-SCCCCH--HHHCCSCS
T ss_pred ----CCeeECC--CCCcHHhHHhcCCcccc------------CCC-CCcCCc--CCcCcCCC
Confidence 4799999 99999999999975421 233 479998 46666554
No 2
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.33 E-value=6.3e-13 Score=124.44 Aligned_cols=91 Identities=31% Similarity=0.732 Sum_probs=74.6
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCcc-ccccCCCccC
Q 000955 90 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHK-CCICKQGENK 168 (1210)
Q Consensus 90 QHqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH~-C~vCkkseDk 168 (1210)
...|.+|+..|.. .+++.|. .|++.||+.|+.....+ + ....|.||.+. |.+|++.++.
T Consensus 7 ~~~C~~C~~~g~~-----~~ll~C~--~C~~~~H~~Cl~~~~~~------------~-~~~~W~C~~C~~C~~C~~~~~~ 66 (111)
T 2ysm_A 7 GANCAVCDSPGDL-----LDQFFCT--TCGQHYHGMCLDIAVTP------------L-KRAGWQCPECKVCQNCKQSGED 66 (111)
T ss_dssp CSCBTTTCCCCCT-----TTSEECS--SSCCEECTTTTTCCCCT------------T-TSTTCCCTTTCCCTTTCCCSCC
T ss_pred CCCCcCCCCCCCC-----cCCeECC--CCCCCcChHHhCCcccc------------c-cccCccCCcCCcccccCccCCC
Confidence 4579999988753 3679998 99999999999976532 1 23579999995 9999988753
Q ss_pred CCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 169 ADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 169 n~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
.+|+.|+.|+++||..||.|++. .+|...|.|
T Consensus 67 ----~~ll~Cd~C~~~yH~~Cl~ppl~-------~~P~g~W~C 98 (111)
T 2ysm_A 67 ----SKMLVCDTCDKGYHTFCLQPVMK-------SVPTNGWKC 98 (111)
T ss_dssp ----TTEEECSSSCCEEEGGGSSSCCS-------SCCSSCCCC
T ss_pred ----CCeeECCCCCcHHhHHhcCCccc-------cCCCCCcCC
Confidence 36999999999999999999875 567789998
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.29 E-value=3.1e-12 Score=120.72 Aligned_cols=100 Identities=18% Similarity=0.475 Sum_probs=75.4
Q ss_pred cccccccCCCCCCCC-CCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCc-cccccCCCcc
Q 000955 90 QHQCFACGKLGSSDK-ETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH-KCCICKQGEN 167 (1210)
Q Consensus 90 QHqCFVCGqlGSSDK-~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH-~C~vCkkseD 167 (1210)
.+.|.+|...+..++ ..+.+|+.|+ .|++.||+.|+...+. +...+. ...|.||.+ +|.+|+..++
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~---------~~~~~~-~~~W~C~~C~~C~vC~~~~~ 72 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPE---------LTVRVK-ALRWQCIECKTCSSCRDQGK 72 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHH---------HHHHHH-TSCCCCTTTCCBTTTCCCCC
T ss_pred CccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHH---------HHHHhh-ccccccccCCccccccCcCC
Confidence 457888877654322 1245899999 8999999999985421 112233 357999999 5999998643
Q ss_pred CCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 168 KADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 168 kn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
. +.+|+.|+.|+++||..||.|++. .+|...|.|
T Consensus 73 ~---~~~ll~Cd~C~~~yH~~Cl~p~l~-------~~P~~~W~C 106 (112)
T 3v43_A 73 N---ADNMLFCDSCDRGFHMECCDPPLT-------RMPKGMWIC 106 (112)
T ss_dssp T---TCCCEECTTTCCEECGGGCSSCCS-------SCCSSCCCC
T ss_pred C---ccceEEcCCCCCeeecccCCCCCC-------CCCCCCeEC
Confidence 2 346999999999999999999875 578889998
No 4
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.20 E-value=1.5e-11 Score=116.66 Aligned_cols=97 Identities=26% Similarity=0.566 Sum_probs=72.7
Q ss_pred cccccCCCCCCCC--CCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCc-cccccCCCccC
Q 000955 92 QCFACGKLGSSDK--ETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH-KCCICKQGENK 168 (1210)
Q Consensus 92 qCFVCGqlGSSDK--~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH-~C~vCkkseDk 168 (1210)
.|.+|...+..++ ..+.+|+.|. .|++.||+.|+..... +...+.. ..|.||.+ .|.+|+...+.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~---------~~~~~~~-~~W~C~~C~~C~~C~~~~~~ 70 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLN---------MTEAVKT-YKWQCIECKSCILCGTSEND 70 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHH---------HHHHHHH-TTCCCGGGCCCTTTTCCTTT
T ss_pred cCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhh---------hhhccCC-CccCccccCccCcccccCCC
Confidence 5777765543221 1246899999 9999999999986531 1112233 46999999 59999987643
Q ss_pred CCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 169 ADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 169 n~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
..|+.|+.|+++||..||.|++. .+|...|.|
T Consensus 71 ----~~ll~Cd~C~~~yH~~Cl~ppl~-------~~P~g~W~C 102 (114)
T 2kwj_A 71 ----DQLLFCDDCDRGYHMYCLNPPVA-------EPPEGSWSC 102 (114)
T ss_dssp ----TTEEECSSSCCEEETTTSSSCCS-------SCCSSCCCC
T ss_pred ----CceEEcCCCCccccccccCCCcc-------CCCCCCeEC
Confidence 46999999999999999999875 578889997
No 5
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.02 E-value=9.5e-11 Score=111.12 Aligned_cols=92 Identities=33% Similarity=0.739 Sum_probs=68.9
Q ss_pred cccccccCC----------CCeeccccccCCccccccccCcccccccCCCChh--hhhccccccccchhhccccccccCC
Q 000955 31 SVCSFCDNG----------GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKD--EVEAMLNFFCKNCEYKQHQCFACGK 98 (1210)
Q Consensus 31 dVCaIC~dG----------GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~--evqp~~sW~CpnCe~gQHqCFVCGq 98 (1210)
++|.+|..+ ++||+|+ .|+++||+. | |+++.. ...+...|+|++|. .|.+|++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~-~C~~~~H~~--------C--l~~~~~~~~~~~~~~W~C~~C~----~C~~C~~ 66 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCA-DCGRSGHPT--------C--LQFTLNMTEAVKTYKWQCIECK----SCILCGT 66 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECS-SSCCEECTT--------T--TTCCHHHHHHHHHTTCCCGGGC----CCTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeC-CCCCccchh--------h--CCChhhhhhccCCCccCccccC----ccCcccc
Confidence 679999764 4899999 599999999 5 334322 12246799999996 6999998
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCc
Q 000955 99 LGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH 157 (1210)
Q Consensus 99 lGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH 157 (1210)
.+. ...++.|+ .|.+.||..|+.+.+.. +..+ .|.||.+
T Consensus 67 ~~~-----~~~ll~Cd--~C~~~yH~~Cl~ppl~~------------~P~g-~W~C~~C 105 (114)
T 2kwj_A 67 SEN-----DDQLLFCD--DCDRGYHMYCLNPPVAE------------PPEG-SWSCHLC 105 (114)
T ss_dssp CTT-----TTTEEECS--SSCCEEETTTSSSCCSS------------CCSS-CCCCHHH
T ss_pred cCC-----CCceEEcC--CCCccccccccCCCccC------------CCCC-CeECccc
Confidence 753 35899999 99999999999975421 3333 6998743
No 6
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.02 E-value=1.4e-10 Score=109.58 Aligned_cols=95 Identities=25% Similarity=0.641 Sum_probs=70.4
Q ss_pred cCcccccccC---------CCCeeccccccCCccccccccCcccccccCCCChh--hhhccccccccchhhccccccccC
Q 000955 29 FDSVCSFCDN---------GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKD--EVEAMLNFFCKNCEYKQHQCFACG 97 (1210)
Q Consensus 29 nDdVCaIC~d---------GGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~--evqp~~sW~CpnCe~gQHqCFVCG 97 (1210)
...+|.+|.. +++||.|+ .|.++||+. | |+++.. ...+...|+|++|. .|.+|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~-~C~~~~H~~--------C--l~~~~~~~~~~~~~~W~C~~C~----~C~vC~ 68 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCA-DCGNSGHPS--------C--LKFSPELTVRVKALRWQCIECK----TCSSCR 68 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECT-TTCCEECHH--------H--HTCCHHHHHHHHTSCCCCTTTC----CBTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhh-hcCCCCCCc--------h--hcCCHHHHHHhhccccccccCC----cccccc
Confidence 3578999964 35899999 599999999 5 333221 11246799999997 699999
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCc
Q 000955 98 KLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH 157 (1210)
Q Consensus 98 qlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH 157 (1210)
..+.. ...++.|+ .|.+.||..|+.+.+. .+..+ .|.||.+
T Consensus 69 ~~~~~----~~~ll~Cd--~C~~~yH~~Cl~p~l~------------~~P~~-~W~C~~C 109 (112)
T 3v43_A 69 DQGKN----ADNMLFCD--SCDRGFHMECCDPPLT------------RMPKG-MWICQIC 109 (112)
T ss_dssp CCCCT----TCCCEECT--TTCCEECGGGCSSCCS------------SCCSS-CCCCTTT
T ss_pred CcCCC----ccceEEcC--CCCCeeecccCCCCCC------------CCCCC-CeECCCC
Confidence 87642 24799999 8999999999986542 13344 6999874
No 7
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.94 E-value=5.3e-10 Score=106.26 Aligned_cols=78 Identities=27% Similarity=0.640 Sum_probs=64.1
Q ss_pred ccccCcccccccCCCCeecccc-ccCCccccccccCcccccccCCCChhhhhccccccccchhhccccccccCCCCCCCC
Q 000955 26 DELFDSVCSFCDNGGDLLCCEG-RCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYKQHQCFACGKLGSSDK 104 (1210)
Q Consensus 26 dDlnDdVCaIC~dGGELLCCDG-sC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~gQHqCFVCGqlGSSDK 104 (1210)
++.++++|.+|+++|+||+|+. .|+++||+. | |+++.. +.+.|+|+.| .|.+|++..
T Consensus 11 ~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~--------C--l~L~~~---P~g~W~Cp~c-----~C~~C~k~~---- 68 (107)
T 4gne_A 11 KQMHEDYCFQCGDGGELVMCDKKDCPKAYHLL--------C--LNLTQP---PYGKWECPWH-----QCDECSSAA---- 68 (107)
T ss_dssp CCSSCSSCTTTCCCSEEEECCSTTCCCEECTG--------G--GTCSSC---CSSCCCCGGG-----BCTTTCSBC----
T ss_pred cCCCCCCCCcCCCCCcEeEECCCCCCcccccc--------c--CcCCcC---CCCCEECCCC-----CCCcCCCCC----
Confidence 3456789999999999999994 599999999 5 445442 4689999988 499998864
Q ss_pred CCCCcccccCCCCCCCCCcccccccccc
Q 000955 105 ETGAEVFPCVSATCGHFYHPHCVSKLLL 132 (1210)
Q Consensus 105 ~SGaELfkCsVasCGKFYHpkCLa~l~~ 132 (1210)
.+.|. .|++.||..|+...+.
T Consensus 69 -----~~~C~--~Cp~sfC~~c~~g~l~ 89 (107)
T 4gne_A 69 -----VSFCE--FCPHSFCKDHEKGALV 89 (107)
T ss_dssp -----CEECS--SSSCEECTTTCTTSCE
T ss_pred -----CcCcC--CCCcchhhhccCCcce
Confidence 28898 9999999999987663
No 8
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.86 E-value=1.9e-09 Score=102.48 Aligned_cols=83 Identities=22% Similarity=0.526 Sum_probs=66.3
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCccccccCCCccCCC
Q 000955 91 HQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHKCCICKQGENKAD 170 (1210)
Q Consensus 91 HqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH~C~vCkkseDkn~ 170 (1210)
..|++|+.. ++|+.|+...|.+.||..||.... +.. ..|.||.|.|..|++..
T Consensus 16 ~~C~~C~~~--------G~ll~CD~~~Cp~~fH~~Cl~L~~--------------~P~-g~W~Cp~c~C~~C~k~~---- 68 (107)
T 4gne_A 16 DYCFQCGDG--------GELVMCDKKDCPKAYHLLCLNLTQ--------------PPY-GKWECPWHQCDECSSAA---- 68 (107)
T ss_dssp SSCTTTCCC--------SEEEECCSTTCCCEECTGGGTCSS--------------CCS-SCCCCGGGBCTTTCSBC----
T ss_pred CCCCcCCCC--------CcEeEECCCCCCcccccccCcCCc--------------CCC-CCEECCCCCCCcCCCCC----
Confidence 468899854 379999977899999999998322 233 36999999999999875
Q ss_pred CCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 171 SDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 171 ~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
.+.|..||.+||.+|++..+.. .+...|.|
T Consensus 69 ----~~~C~~Cp~sfC~~c~~g~l~~-------~~~~~~~c 98 (107)
T 4gne_A 69 ----VSFCEFCPHSFCKDHEKGALVP-------SALEGRLC 98 (107)
T ss_dssp ----CEECSSSSCEECTTTCTTSCEE-------CTTTTCEE
T ss_pred ----CcCcCCCCcchhhhccCCccee-------cCCCCcee
Confidence 3789999999999999998753 34567765
No 9
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.46 E-value=8.5e-08 Score=82.43 Aligned_cols=50 Identities=30% Similarity=0.835 Sum_probs=39.8
Q ss_pred cccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 27 ELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 27 DlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
|.++.+|.+|+++|+||+|+ .|.++||+. |+.+.++.. +.+.|+|+.|..
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd-~C~~~fH~~--------Cl~ppl~~~---p~g~W~C~~C~~ 55 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCD-TCPSSYHIH--------CLNPPLPEI---PNGEWLCPRCTC 55 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCS-SSCCCBCSS--------SSSSCCSSC---CSSCCCCTTTTT
T ss_pred cCCCCcCCCCCCCCCEEEcC-CCCHHHccc--------ccCCCcCcC---CCCccCChhhcC
Confidence 44578999999999999999 599999999 433445432 458999999964
No 10
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.41 E-value=9.9e-08 Score=82.01 Aligned_cols=53 Identities=25% Similarity=0.732 Sum_probs=41.5
Q ss_pred cccccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 25 EDELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 25 ddDlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
.++.++.+|.+|.++|+||+|+ .|.++||+. |+.+.++.. +.+.|+|+.|...
T Consensus 6 ~~~~~~~~C~vC~~~g~ll~CD-~C~~~fH~~--------Cl~p~l~~~---p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQGGEIILCD-TCPRAYHMV--------CLDPDMEKA---PEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSCCSSEEECS-SSSCEEEHH--------HHCTTCCSC---CCSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCCCCcEEECC-CCChhhhhh--------ccCCCCCCC---CCCceECcccccc
Confidence 3445578999999999999999 699999999 544444432 4689999999753
No 11
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.38 E-value=1.4e-07 Score=87.31 Aligned_cols=49 Identities=27% Similarity=0.649 Sum_probs=39.8
Q ss_pred cccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchh
Q 000955 27 ELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCE 87 (1210)
Q Consensus 27 DlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe 87 (1210)
+.++++|.+|+++|+||+|+ .|.++||+. |+.++++.. +.+.|+|+.|.
T Consensus 22 d~n~~~C~vC~~~g~LL~CD-~C~~~fH~~--------Cl~PpL~~~---P~g~W~C~~C~ 70 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCN-QCEFCFHLD--------CHLPALQDV---PGEEWSCSLCH 70 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECT-TSSCEECTT--------SSSTTCCCC---CSSSCCCCSCC
T ss_pred CCCCCcCcCcCCCCCEEECC-CCCCceecc--------cCCCCCCCC---cCCCcCCcccc
Confidence 44568999999999999999 699999999 544555542 46899999886
No 12
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.37 E-value=1.4e-07 Score=82.09 Aligned_cols=51 Identities=31% Similarity=0.804 Sum_probs=40.6
Q ss_pred cccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 27 ELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 27 DlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
+.++++|.+|.++|+||+|+ .|.++||+. |+.+.++.. +.+.|+|+.|..+
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD-~C~~~fH~~--------Cl~ppl~~~---P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCD-GCPRAFHLA--------CLSPPLREI---PSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECS-SCCCEECTT--------TSSSCCSSC---CSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCCCEEEcC-CCChhhccc--------ccCCCcCcC---CCCCeECccccCc
Confidence 45678999999999999999 599999999 433444432 4589999999754
No 13
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.36 E-value=1.1e-07 Score=97.71 Aligned_cols=51 Identities=37% Similarity=0.778 Sum_probs=40.3
Q ss_pred ccccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 26 DELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 26 dDlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
+|.++++|.+|+++|+||+|++ |.++||..| +.++++.. +.+.|+|+.|..
T Consensus 3 ~d~~~~~C~~C~~~g~ll~Cd~-C~~~~H~~C--------l~p~l~~~---p~~~W~C~~C~~ 53 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGDLLCCEK-CPKVFHLTC--------HVPTLLSF---PSGDWICTFCRD 53 (207)
T ss_dssp CCSSCSSBTTTCCCEEEEECSS-SSCEECTTT--------SSSCCSSC---CSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCceEEcCC-CCCccCCcc--------CCCCCCCC---CCCCEEeCceeC
Confidence 3456789999999999999995 999999994 44455432 468899998863
No 14
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.32 E-value=1.9e-07 Score=79.52 Aligned_cols=51 Identities=27% Similarity=0.713 Sum_probs=40.8
Q ss_pred cccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 27 ELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 27 DlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
|.++++|.+|+++|+||+|+ .|.++||+. |+.+.++.. +.+.|+|+.|...
T Consensus 2 d~~~~~C~vC~~~g~ll~Cd-~C~~~fH~~--------Cl~ppl~~~---p~g~W~C~~C~~~ 52 (60)
T 2puy_A 2 MIHEDFCSVCRKSGQLLMCD-TCSRVYHLD--------CLDPPLKTI---PKGMWICPRCQDQ 52 (60)
T ss_dssp CCCCSSCTTTCCCSSCEECS-SSSCEECGG--------GSSSCCSSC---CCSCCCCHHHHHH
T ss_pred CCCCCCCcCCCCCCcEEEcC-CCCcCEECC--------cCCCCcCCC---CCCceEChhccCh
Confidence 45679999999999999999 699999999 533445432 4579999999753
No 15
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.27 E-value=2.9e-07 Score=92.79 Aligned_cols=49 Identities=35% Similarity=0.786 Sum_probs=39.2
Q ss_pred ccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 28 LFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 28 lnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
.++++|.+|+++|+||+|+ .|.++||..| +.++++.. +.+.|+|+.|..
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd-~C~~~~H~~C--------~~p~l~~~---p~~~W~C~~C~~ 50 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCE-KCPKVFHLSC--------HVPTLTNF---PSGEWICTFCRD 50 (184)
T ss_dssp CSCSSCTTTCCCSSCEECS-SSSCEECTTT--------SSSCCSSC---CSSCCCCTTTSC
T ss_pred CCCCccccCCCCCeeeecC-CCCcccCccc--------cCCCCCCC---CCCCEECccccC
Confidence 3678999999999999999 5999999994 44455432 457899998863
No 16
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.26 E-value=3.5e-07 Score=77.09 Aligned_cols=50 Identities=28% Similarity=0.684 Sum_probs=39.5
Q ss_pred cccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 27 ELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 27 DlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
+.++.+|.+|+++|+||+|+ .|.++||+. |+.+.++.. +.+.|+|+.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd-~C~~~~H~~--------Cl~ppl~~~---p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCD-TCSRVYHLD--------CLDPPLKTI---PKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECS-SSSCEECSS--------SSSSCCCSC---CCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcC-CCCcceECc--------cCCCCcCCC---CCCceEChhhhC
Confidence 34578999999999999999 699999999 433444432 457999999963
No 17
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.26 E-value=3.1e-07 Score=80.61 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=38.7
Q ss_pred cCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 29 FDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 29 nDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
.+..|.+|+++|+||+|+ .|.++||+. |+.+.++.. +.+.|+|+.|..
T Consensus 11 ~~~~C~vC~~~~~ll~Cd-~C~~~~H~~--------Cl~P~l~~~---P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCT-HCAAAFHWR--------CHFPAGTSR---PGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCCTTCEECS-SSCCEECHH--------HHCTTTCCC---CSSSCCCTTTTT
T ss_pred CCCCcCCCCCCCeEEECC-CCCCceecc--------cCCCccCcC---CCCCEECccccC
Confidence 457799999999999999 599999999 544555442 468899999964
No 18
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.23 E-value=7.9e-07 Score=78.55 Aligned_cols=52 Identities=19% Similarity=0.544 Sum_probs=44.4
Q ss_pred CCceecCCccccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccc-cccc
Q 000955 149 GESFTCPLHKCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITR-AWEG 211 (1210)
Q Consensus 149 GksFrCPlH~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~R-AW~C 211 (1210)
...|.|+.+.|.+|++.++. +.|+.|+.|+++||..||.|++. .+|.. .|.|
T Consensus 11 ~~~w~C~~C~C~~C~~~~~~----~~ll~CD~C~~~yH~~Cl~Ppl~-------~~P~g~~W~C 63 (70)
T 3asl_A 11 DVNRLCRVCACHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLS-------SVPSEDEWYC 63 (70)
T ss_dssp CTTSCCTTTSBTTTCCCSCG----GGEEECTTTCCEEEGGGSSSCCS-------SCCSSSCCCC
T ss_pred CCCeECCCCCCcCCCCcCCC----CCEEEcCCCCCceecccCCCCcC-------CCCCCCCcCC
Confidence 35799999999999987643 36999999999999999999886 46677 9997
No 19
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.19 E-value=7.2e-07 Score=76.73 Aligned_cols=54 Identities=17% Similarity=0.695 Sum_probs=41.8
Q ss_pred cccCcccccccCC-----CCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 27 ELFDSVCSFCDNG-----GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 27 DlnDdVCaIC~dG-----GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
+..+.+|.+|+.+ +.||+|+ .|.++||+. |+.+.++...+.+.+.|+|+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd-~C~~~~H~~--------C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICD-KCGQGYHQL--------CHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECS-SSCCEEETT--------TSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECC-CCChHHHhh--------hCCCcccccccCCCCCEECCCCcCc
Confidence 3446899999987 8999999 599999999 5445555433335689999999754
No 20
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.17 E-value=4e-07 Score=90.50 Aligned_cols=56 Identities=25% Similarity=0.746 Sum_probs=42.6
Q ss_pred cccccccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhh---h-hccccccccchh
Q 000955 23 NEEDELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDE---V-EAMLNFFCKNCE 87 (1210)
Q Consensus 23 deddDlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~e---v-qp~~sW~CpnCe 87 (1210)
..++|.++++|.+|.+||+||||+ .|+|+||+.|+ .+.+.+.. + .+.+.|.|..|.
T Consensus 56 ~~d~Dg~~d~C~vC~~GG~LlcCD-~Cpr~Fh~~Cl--------~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 56 SRDSDGMDEQCRWCAEGGNLICCD-FCHNAFCKKCI--------LRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CBCTTSCBCSCSSSCCCSSEEECS-SSCCEEEHHHH--------HHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred eecCCCCCCeecccCCCCcEEeCC-CCCCeeeHhhc--------CCCCChhhhhhcccCCCCCEeeccc
Confidence 344577889999999999999999 79999999954 33443221 1 256899988885
No 21
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=1.5e-06 Score=78.32 Aligned_cols=51 Identities=22% Similarity=0.483 Sum_probs=43.6
Q ss_pred CceecCCccccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccc-cccc
Q 000955 150 ESFTCPLHKCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITR-AWEG 211 (1210)
Q Consensus 150 ksFrCPlH~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~R-AW~C 211 (1210)
..|.|+.+.|.+|+..++. ..|+.|+.|+.+||..||.|++. .+|.. .|.|
T Consensus 20 ~~w~C~~c~C~vC~~~~~~----~~ll~CD~C~~~yH~~Cl~Ppl~-------~~P~g~~W~C 71 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHEP----NMQLLCDECNVAYHIYCLNPPLD-------KVPEEEYWYC 71 (77)
T ss_dssp SSSCCSSSSCSSSCCCCCS----TTEEECSSSCCEEETTSSSSCCS-------SCCCSSCCCC
T ss_pred CCeECCCCCCcCcCCcCCC----CCEEEcCCCCccccccccCCCcc-------CCCCCCCcCC
Confidence 4699999999999987643 46999999999999999999885 46767 8997
No 22
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.16 E-value=1.4e-06 Score=78.70 Aligned_cols=51 Identities=20% Similarity=0.552 Sum_probs=44.5
Q ss_pred CceecCCccccccCCCccCCCCCCceeeccccCcccccccCCCCccccccccccccccc-ccc
Q 000955 150 ESFTCPLHKCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRA-WEG 211 (1210)
Q Consensus 150 ksFrCPlH~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RA-W~C 211 (1210)
..|.|+.+.|.+|++.++. .+|+.|+.|+++||..||.|++. .+|... |.|
T Consensus 20 ~~W~C~~C~C~vC~~~~d~----~~ll~CD~C~~~yH~~Cl~PpL~-------~~P~g~~W~C 71 (77)
T 3shb_A 20 VNRLCRVCACHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLS-------SVPSEDEWYC 71 (77)
T ss_dssp TTSCCTTTSBTTTCCCSCG----GGEEECTTTCCEEETTTSSSCCS-------SCCSSSCCCC
T ss_pred CCCCCCCCcCCccCCCCCC----cceeEeCCCCCccCcccCCCccc-------CCCCCCceEC
Confidence 5799999999999998753 36999999999999999999985 567777 997
No 23
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.10 E-value=1.1e-06 Score=80.51 Aligned_cols=52 Identities=25% Similarity=0.700 Sum_probs=40.6
Q ss_pred cCcccccccCC-----CCeeccccccCCccccccccCcccccccCCCChhhh-hccccccccchhhc
Q 000955 29 FDSVCSFCDNG-----GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEV-EAMLNFFCKNCEYK 89 (1210)
Q Consensus 29 nDdVCaIC~dG-----GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~ev-qp~~sW~CpnCe~g 89 (1210)
.+.+|.+|.++ +.||+|+ .|.++||+. |+.+.++...+ .+.+.|+|+.|...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD-~C~~~yH~~--------Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQ-ECHNLYHQD--------CHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECS-SSCCEEETT--------TSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECC-CCCCeEcCc--------cCCCcccccccCCCCCCeeCccccch
Confidence 47899999987 6899999 599999999 55556654322 25689999999754
No 24
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.01 E-value=2.7e-06 Score=87.00 Aligned_cols=48 Identities=27% Similarity=0.668 Sum_probs=39.0
Q ss_pred CcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 30 DSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 30 DdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
+++|.+|+++|+||+|+ .|.++||.. |+.++++.. +.+.|+|+.|...
T Consensus 2 ~~~C~~C~~~g~ll~Cd-~C~~~~H~~--------Cl~p~l~~~---p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCN-QCEFCFHLD--------CHLPALQDV---PGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCT-TTCCBCCST--------TSTTCCSSC---CCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECC-CCCchhccc--------cCCCCcccC---CCCCCCCcCccCC
Confidence 57899999999999999 599999999 444455532 4689999999753
No 25
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=97.96 E-value=2.2e-06 Score=78.74 Aligned_cols=48 Identities=29% Similarity=0.729 Sum_probs=37.9
Q ss_pred ccCcccccccCCC-----CeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 28 LFDSVCSFCDNGG-----DLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 28 lnDdVCaIC~dGG-----ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
.++.+|.+|++++ +||+|+ .|.++||+. | ++++. + +.+.|+|+.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD-~C~~~fH~~--------C--l~p~~--v-P~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCD-MCNLAVHQE--------C--YGVPY--I-PEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECS-SSCCCCCHH--------H--HTCSS--C-CSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECC-CCCchhhcc--------c--CCCCc--c-CCCceECccccCc
Confidence 3568999999987 899999 599999999 5 33332 2 4689999999753
No 26
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=4e-06 Score=77.49 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=40.3
Q ss_pred cccccCcccccccCCC---CeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 25 EDELFDSVCSFCDNGG---DLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 25 ddDlnDdVCaIC~dGG---ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
.+..++.+|.+|.+++ .||+|+ .|.++||+. |+.+.++.. +.+.|+|+.|..+
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD-~C~~~~H~~--------Cl~Ppl~~~---P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCD-GCDDNYHIF--------CLLPPLPEI---PRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECT-TTCCEECSS--------SSSSCCSSC---CSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcC-CCCchhccc--------cCCCCcccC---CCCCcCCccCcCc
Confidence 3445578899999987 499999 599999999 544445432 4689999999754
No 27
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.90 E-value=9.2e-06 Score=75.60 Aligned_cols=45 Identities=31% Similarity=0.865 Sum_probs=35.4
Q ss_pred cCcccccccC--CCCeeccccc--cC-CccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 29 FDSVCSFCDN--GGDLLCCEGR--CL-RSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 29 nDdVCaIC~d--GGELLCCDGs--C~-RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
...+| +|++ .|+||+|+ . |. .+||+. | ++++.. +.+.|+|+.|..
T Consensus 35 e~~yC-iC~~~~~g~MI~CD-~~dC~~~WfH~~--------C--Vgl~~~---p~g~W~Cp~C~~ 84 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCD-NPDCSIEWFHFA--------C--VGLTTK---PRGKWFCPRCSQ 84 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCS-CSSCSCCCCCST--------T--TTCSSC---CCSSCCCTTTCC
T ss_pred CCcEE-ECCCCCCCCEeEec-CCCCCCCCEecc--------c--CCcCcC---CCCCEECcCccC
Confidence 45778 9998 68999999 6 88 699999 5 556543 357899999964
No 28
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.87 E-value=3e-06 Score=83.23 Aligned_cols=57 Identities=23% Similarity=0.694 Sum_probs=42.3
Q ss_pred cccccccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChh---hh-hccccccccchhh
Q 000955 23 NEEDELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKD---EV-EAMLNFFCKNCEY 88 (1210)
Q Consensus 23 deddDlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~---ev-qp~~sW~CpnCe~ 88 (1210)
..+||.++++|.+|.+||+|+||+ .|+|+||..|+. +.+.+. .+ .+.+.|.|..|..
T Consensus 50 ~~d~Dg~~~~C~vC~dGG~LlcCd-~Cpr~Fc~~Cl~--------~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 50 SRDSDGMDEQCRWCAEGGNLICCD-FCHNAFCKKCIL--------RNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBCTTSCBSSCTTTCCCSEEEECS-SSSCEEEHHHHH--------HHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred ccCCCCCCCcCeecCCCCeeEecC-CCchhhhHHHhC--------CCcchhHHHHhccCCCCeEcCCcCC
Confidence 345677889999999999999999 799999999643 222211 12 2468899988854
No 29
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.85 E-value=7e-06 Score=86.94 Aligned_cols=51 Identities=20% Similarity=0.554 Sum_probs=41.1
Q ss_pred CceecCCccccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccc-cccc
Q 000955 150 ESFTCPLHKCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITR-AWEG 211 (1210)
Q Consensus 150 ksFrCPlH~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~R-AW~C 211 (1210)
..|.|+.+.|.+|+...+. ..|+.|+.|+.+||..||.|++. .+|.. .|.|
T Consensus 168 ~~w~C~~c~C~vC~~~~~~----~~lL~CD~C~~~yH~~CL~PPL~-------~vP~G~~W~C 219 (226)
T 3ask_A 168 VNRLCRVCACHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLS-------SVPSEDEWYC 219 (226)
T ss_dssp TTSCCTTTSCSSSCCCCC------CCEECSSSCCEECSCC--CCCC-------SCCSSSCCCC
T ss_pred cCEecCCCCCcCCCCCCCC----CCeEEcCCCCcceeCccCCCCcc-------cCCCCCCCCC
Confidence 4699999999999987643 36999999999999999999986 56777 8997
No 30
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=97.83 E-value=3.5e-06 Score=74.89 Aligned_cols=49 Identities=29% Similarity=0.696 Sum_probs=38.2
Q ss_pred cccCcccccccCCC-----CeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 27 ELFDSVCSFCDNGG-----DLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 27 DlnDdVCaIC~dGG-----ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
...+.+|.+|++++ +||+|+ .|.++||+. | ++++. + +.+.|+|+.|..+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD-~C~~~~H~~--------C--l~~~~--v-P~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCD-MCNLAVHQE--------C--YGVPY--I-PEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECS-SSCCEEEHH--------H--HTCSS--C-CSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECC-CCCCccccc--------c--CCCCc--C-CCCCcCCccCcCc
Confidence 34468999999875 899999 599999999 5 33332 2 4689999999754
No 31
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.80 E-value=8e-06 Score=67.24 Aligned_cols=43 Identities=23% Similarity=0.699 Sum_probs=36.2
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
.|.+|++.++. ..|+.|+.|+++||..||.|++. .+|...|.|
T Consensus 2 ~C~vC~~~~~~----~~ll~Cd~C~~~~H~~Cl~p~l~-------~~P~g~W~C 44 (51)
T 1f62_A 2 RCKVCRKKGED----DKLILCDECNKAFHLFCLRPALY-------EVPDGEWQC 44 (51)
T ss_dssp CCTTTCCSSCC----SCCEECTTTCCEECHHHHCTTCC-------SCCSSCCSC
T ss_pred CCCCCCCCCCC----CCEEECCCCChhhCcccCCCCcC-------CCCCCcEEC
Confidence 48899988653 36999999999999999999875 567789997
No 32
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.79 E-value=1.3e-05 Score=71.28 Aligned_cols=44 Identities=32% Similarity=0.914 Sum_probs=35.1
Q ss_pred CcccccccC--CCCeeccccc--cC-CccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 30 DSVCSFCDN--GGDLLCCEGR--CL-RSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 30 DdVCaIC~d--GGELLCCDGs--C~-RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
..+| +|++ .|+||+|+ . |. .+||+. | ++++.. +.+.|+|+.|..
T Consensus 16 ~~~C-~C~~~~~g~MI~CD-~~~C~~~wfH~~--------C--vgl~~~---p~g~w~Cp~C~~ 64 (71)
T 1wen_A 16 PTYC-LCHQVSYGEMIGCD-NPDCSIEWFHFA--------C--VGLTTK---PRGKWFCPRCSQ 64 (71)
T ss_dssp CCCS-TTCCCSCSSEECCS-CSSCSCCCEETT--------T--TTCSSC---CSSCCCCTTTSS
T ss_pred CCEE-ECCCCCCCCEeEee-CCCCCCccEecc--------c--CCcCcC---CCCCEECCCCCc
Confidence 5788 7998 68999999 6 88 699999 5 566553 357899999964
No 33
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.75 E-value=7.8e-06 Score=67.29 Aligned_cols=45 Identities=27% Similarity=0.694 Sum_probs=35.1
Q ss_pred ccccccCCC---CeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 32 VCSFCDNGG---DLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 32 VCaIC~dGG---ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
+|.+|+++| +||.|+ .|.++||+. |+.++++.. +.+.|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~--------Cl~p~l~~~---P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLF--------CLRPALYEV---PDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHH--------HHCTTCCSC---CSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcc--------cCCCCcCCC---CCCcEECcCccc
Confidence 699999765 699999 599999999 544455542 457999999963
No 34
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.74 E-value=1.6e-05 Score=73.80 Aligned_cols=40 Identities=18% Similarity=0.657 Sum_probs=35.1
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+|.+|+.++ .|+.|+.|+++||.+||.|++. .+|...|.|
T Consensus 27 ~C~vC~~~g-------~LL~CD~C~~~fH~~Cl~PpL~-------~~P~g~W~C 66 (88)
T 1fp0_A 27 ICRVCQKPG-------DLVMCNQCEFCFHLDCHLPALQ-------DVPGEEWSC 66 (88)
T ss_dssp CCSSSCSSS-------CCEECTTSSCEECTTSSSTTCC-------CCCSSSCCC
T ss_pred cCcCcCCCC-------CEEECCCCCCceecccCCCCCC-------CCcCCCcCC
Confidence 499999775 4999999999999999999885 578899997
No 35
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.71 E-value=1.6e-05 Score=74.15 Aligned_cols=52 Identities=21% Similarity=0.810 Sum_probs=37.7
Q ss_pred cccccccCcccccccCCCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchh
Q 000955 23 NEEDELFDSVCSFCDNGGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCE 87 (1210)
Q Consensus 23 deddDlnDdVCaIC~dGGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe 87 (1210)
+..+|...-+|..|.+.|.||+|+ .|.++||.. | ++++...+ ...|+|+.|.
T Consensus 23 ~~~~d~vrCiC~~~~~~~~mi~Cd-~C~~w~H~~--------C--~~~~~~~~--p~~w~C~~C~ 74 (98)
T 2lv9_A 23 SYGTDVTRCICGFTHDDGYMICCD-KCSVWQHID--------C--MGIDRQHI--PDTYLCERCQ 74 (98)
T ss_dssp CCCCCBCCCTTSCCSCSSCEEEBT-TTCBEEETT--------T--TTCCTTSC--CSSBCCTTTS
T ss_pred CCCCCCEEeECCCccCCCcEEEcC-CCCCcCcCc--------C--CCCCccCC--CCCEECCCCc
Confidence 344455666788888889999999 599999999 5 33433222 2579999885
No 36
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.71 E-value=1.3e-05 Score=70.47 Aligned_cols=41 Identities=20% Similarity=0.496 Sum_probs=34.9
Q ss_pred ccccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 157 HKCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 157 H~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
-.|.+|+..+ .|+.|+.|+++||.+||.+++. .+|.+.|.|
T Consensus 13 ~~C~vC~~~~-------~ll~Cd~C~~~~H~~Cl~P~l~-------~~P~g~W~C 53 (66)
T 2lri_C 13 ARCGVCGDGT-------DVLRCTHCAAAFHWRCHFPAGT-------SRPGTGLRC 53 (66)
T ss_dssp CCCTTTSCCT-------TCEECSSSCCEECHHHHCTTTC-------CCCSSSCCC
T ss_pred CCcCCCCCCC-------eEEECCCCCCceecccCCCccC-------cCCCCCEEC
Confidence 4599998654 4999999999999999999885 578889997
No 37
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=2.3e-05 Score=72.42 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=42.8
Q ss_pred CceecCCcc-ccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 150 ESFTCPLHK-CCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 150 ksFrCPlH~-C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
..|.|.... |.+|+..++. ..|+.|+.|+++||..||.|++. .+|...|.|
T Consensus 9 s~~~~~~~~~C~vC~~~~~~----~~ll~CD~C~~~~H~~Cl~Ppl~-------~~P~g~W~C 60 (92)
T 2e6r_A 9 SSAQFIDSYICQVCSRGDED----DKLLFCDGCDDNYHIFCLLPPLP-------EIPRGIWRC 60 (92)
T ss_dssp CCCCCCCCCCCSSSCCSGGG----GGCEECTTTCCEECSSSSSSCCS-------SCCSSCCCC
T ss_pred chhhccCCCCCccCCCcCCC----CCEEEcCCCCchhccccCCCCcc-------cCCCCCcCC
Confidence 468887764 9999988753 36999999999999999999875 567889997
No 38
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=2.9e-05 Score=65.42 Aligned_cols=40 Identities=28% Similarity=0.779 Sum_probs=34.1
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
.|.+|+..+ .|+.|+.|+++||..||.|++. .++...|.|
T Consensus 11 ~C~vC~~~g-------~ll~Cd~C~~~~H~~Cl~ppl~-------~~p~g~W~C 50 (56)
T 2yql_A 11 FCSVCRKSG-------QLLMCDTCSRVYHLDCLDPPLK-------TIPKGMWIC 50 (56)
T ss_dssp SCSSSCCSS-------CCEECSSSSCEECSSSSSSCCC-------SCCCSSCCC
T ss_pred CCccCCCCC-------eEEEcCCCCcceECccCCCCcC-------CCCCCceEC
Confidence 488898764 4999999999999999999875 467789997
No 39
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=97.60 E-value=3.2e-05 Score=67.20 Aligned_cols=40 Identities=30% Similarity=0.948 Sum_probs=34.1
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
.|.+|+..+ .|+.|+.|+.+||..||.|++. .++...|.|
T Consensus 10 ~C~vC~~~g-------~ll~CD~C~~~fH~~Cl~ppl~-------~~P~g~W~C 49 (66)
T 1xwh_A 10 ECAVCRDGG-------ELICCDGCPRAFHLACLSPPLR-------EIPSGTWRC 49 (66)
T ss_dssp SBSSSSCCS-------SCEECSSCCCEECTTTSSSCCS-------SCCSSCCCC
T ss_pred CCccCCCCC-------CEEEcCCCChhhcccccCCCcC-------cCCCCCeEC
Confidence 488898764 4999999999999999999875 467789997
No 40
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=97.59 E-value=3.5e-05 Score=66.22 Aligned_cols=40 Identities=33% Similarity=0.850 Sum_probs=34.0
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+|.+|+..+ .|+.|+.|+++||..||.+++. .++...|.|
T Consensus 11 ~C~vC~~~g-------~ll~Cd~C~~~fH~~Cl~ppl~-------~~p~g~W~C 50 (61)
T 1mm2_A 11 FCRVCKDGG-------ELLCCDTCPSSYHIHCLNPPLP-------EIPNGEWLC 50 (61)
T ss_dssp SCTTTCCCS-------SCBCCSSSCCCBCSSSSSSCCS-------SCCSSCCCC
T ss_pred cCCCCCCCC-------CEEEcCCCCHHHcccccCCCcC-------cCCCCccCC
Confidence 488898654 4999999999999999999875 567789997
No 41
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=97.57 E-value=3.7e-05 Score=65.53 Aligned_cols=40 Identities=28% Similarity=0.779 Sum_probs=34.2
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
.|.+|+..+ .|+.|+.|+.+||..||.|++. .++...|.|
T Consensus 7 ~C~vC~~~g-------~ll~Cd~C~~~fH~~Cl~ppl~-------~~p~g~W~C 46 (60)
T 2puy_A 7 FCSVCRKSG-------QLLMCDTCSRVYHLDCLDPPLK-------TIPKGMWIC 46 (60)
T ss_dssp SCTTTCCCS-------SCEECSSSSCEECGGGSSSCCS-------SCCCSCCCC
T ss_pred CCcCCCCCC-------cEEEcCCCCcCEECCcCCCCcC-------CCCCCceEC
Confidence 488998764 4999999999999999999875 467789997
No 42
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.54 E-value=1.5e-05 Score=70.13 Aligned_cols=48 Identities=23% Similarity=0.698 Sum_probs=35.7
Q ss_pred CcccccccCC---CCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 30 DSVCSFCDNG---GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 30 DdVCaIC~dG---GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
..+|.+|+.. ..||+|+ .|.++||+. | ++++.... +.+.|+|+.|..+
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD-~C~~wfH~~--------C--v~~~~~~~-~~~~w~C~~C~~~ 68 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCD-DCDDWYHWP--------C--VGIMAAPP-EEMQWFCPKCANK 68 (75)
T ss_dssp EECBTTTTBCCSSCCEEECS-SSSSEEEHH--------H--HTCSSCCC-SSSCCCCTTTHHH
T ss_pred CcCCCCCCCCCCCCCEEEcC-CCCcccccc--------c--CCCCccCC-CCCCEEChhccCc
Confidence 4789999885 3699999 599999999 5 33333222 2478999999754
No 43
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.50 E-value=3.5e-05 Score=82.50 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=98.3
Q ss_pred cccCcccc-hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHh-----hCCccccccccccCC--CCCcccc
Q 000955 510 TSFGRHFT-KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDE-----TGKNCLYKNYDILPA--KNDFNFE 581 (1210)
Q Consensus 510 tS~grhFT-k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~-----~gk~c~~kn~dl~~~--kn~f~Fe 581 (1210)
.+||.||. ...-++.|++.+. +.+|++|||+.||.-.+...|-++... ++.+..-.-.++... ..++.|.
T Consensus 18 k~~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i 95 (279)
T 3uzu_A 18 KRFGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELH 95 (279)
T ss_dssp CCCSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEE
T ss_pred ccCCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEE
Confidence 38999996 4456677888775 478999999999999999998765432 222221111111111 2457777
Q ss_pred ccccccccCCCCCC----CCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecCCcc-ccccccCC--Cc-------
Q 000955 582 KRDWMTVEPKELAP----GSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPET-ERLDRKES--AY------- 647 (1210)
Q Consensus 582 ~~dw~~v~~~elp~----G~~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P~~t-~rld~k~~--~Y------- 647 (1210)
..|.+.+...++.. +...|+| ||||.+-..+--+++++... ...++|++.+|. +||=.++. -|
T Consensus 96 ~~D~~~~~~~~~~~~~~~~~~~vv~-NlPY~iss~il~~ll~~~~~--~~~~~~m~QkEva~Rl~A~pg~k~yg~lSv~~ 172 (279)
T 3uzu_A 96 AGDALTFDFGSIARPGDEPSLRIIG-NLPYNISSPLLFHLMSFAPV--VIDQHFMLQNEVVERMVAEPGTKAFSRLSVML 172 (279)
T ss_dssp ESCGGGCCGGGGSCSSSSCCEEEEE-ECCHHHHHHHHHHHGGGGGG--EEEEEEEEEHHHHHHHTCCTTSTTCCHHHHHH
T ss_pred ECChhcCChhHhcccccCCceEEEE-ccCccccHHHHHHHHhccCC--ccEEEEEeeHHHHHHHhCCCCCCcccHHHHHH
Confidence 88888887777643 3456777 99999555554444443322 256888888887 77765421 12
Q ss_pred --eeeeccccccCCcceecCCCcc
Q 000955 648 --ELVWEDDQFLSGKSFYLPGSVD 669 (1210)
Q Consensus 648 --~liwed~~~l~gksFYlPGsvd 669 (1210)
-.-.+--.-+...+|+=|--||
T Consensus 173 q~~~~~~~~~~v~~~~F~P~PkVd 196 (279)
T 3uzu_A 173 QYRYVMDKLIDVPPESFQPPPKVD 196 (279)
T ss_dssp HHHEEEEEEEEECGGGEESCCSSC
T ss_pred hhheEEEEEEEEChHHccCCCCCe
Confidence 2223333446678998777777
No 44
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.48 E-value=2.6e-05 Score=67.68 Aligned_cols=45 Identities=27% Similarity=0.831 Sum_probs=35.5
Q ss_pred CcccccccC--CCCeeccccc--cC-CccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 30 DSVCSFCDN--GGDLLCCEGR--CL-RSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 30 DdVCaIC~d--GGELLCCDGs--C~-RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
..+| +|++ .|+||+|+ . |+ ++||+. | ++++.. +.+.|+|+.|..+
T Consensus 11 ~~yC-~C~~~~~g~MI~CD-~c~C~~~WfH~~--------C--vgl~~~---p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVSYGEMIGCD-NEQCPIEWFHFS--------C--VSLTYK---PKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEECCSEEEECS-CTTCSSCEEETG--------G--GTCSSC---CSSCCCCHHHHTC
T ss_pred CcEE-ECCCCCCCCeeeee-CCCCCcccEecc--------c--CCcCcC---CCCCEECcCcccC
Confidence 4678 8998 78999999 6 77 999999 5 556543 3589999999753
No 45
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.48 E-value=5.3e-05 Score=76.43 Aligned_cols=40 Identities=25% Similarity=0.823 Sum_probs=34.5
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+|.+|+.++ .|+.|+.|+.+||..||.|++. .++.+.|.|
T Consensus 6 ~C~~C~~~g-------~ll~Cd~C~~~~H~~C~~p~l~-------~~p~~~W~C 45 (184)
T 3o36_A 6 WCAVCQNGG-------ELLCCEKCPKVFHLSCHVPTLT-------NFPSGEWIC 45 (184)
T ss_dssp SCTTTCCCS-------SCEECSSSSCEECTTTSSSCCS-------SCCSSCCCC
T ss_pred ccccCCCCC-------eeeecCCCCcccCccccCCCCC-------CCCCCCEEC
Confidence 589998765 3999999999999999999875 567789997
No 46
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=97.46 E-value=4e-05 Score=65.91 Aligned_cols=40 Identities=33% Similarity=0.863 Sum_probs=34.0
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
.|.+|+..+ .|+.|+.|+++||..||.+++. .++...|.|
T Consensus 13 ~C~vC~~~g-------~ll~CD~C~~~fH~~Cl~p~l~-------~~p~g~W~C 52 (61)
T 2l5u_A 13 YCEVCQQGG-------EIILCDTCPRAYHMVCLDPDME-------KAPEGKWSC 52 (61)
T ss_dssp SCTTTSCCS-------SEEECSSSSCEEEHHHHCTTCC-------SCCCSSCCC
T ss_pred CCccCCCCC-------cEEECCCCChhhhhhccCCCCC-------CCCCCceEC
Confidence 488998754 4999999999999999999875 467789997
No 47
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=6.5e-05 Score=67.71 Aligned_cols=47 Identities=21% Similarity=0.543 Sum_probs=36.0
Q ss_pred cCcccccccC---CCCeeccccccCCccccccccCcccccccCCCChhhhhccc-cccccchh
Q 000955 29 FDSVCSFCDN---GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAML-NFFCKNCE 87 (1210)
Q Consensus 29 nDdVCaIC~d---GGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~-sW~CpnCe 87 (1210)
.+.+|.+|+. +++||+|+ .|.++||+.| +.+.++.. +.+ .|+|+.|.
T Consensus 25 ~~c~C~vC~~~~~~~~ll~CD-~C~~~yH~~C--------l~Ppl~~~---P~g~~W~C~~C~ 75 (77)
T 2e6s_A 25 HSCSCRVCGGKHEPNMQLLCD-ECNVAYHIYC--------LNPPLDKV---PEEEYWYCPSCK 75 (77)
T ss_dssp SSSSCSSSCCCCCSTTEEECS-SSCCEEETTS--------SSSCCSSC---CCSSCCCCTTTC
T ss_pred CCCCCcCcCCcCCCCCEEEcC-CCCccccccc--------cCCCccCC---CCCCCcCCcCcc
Confidence 4558999994 78999999 6999999994 33445432 356 89999996
No 48
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.41 E-value=8.3e-05 Score=68.16 Aligned_cols=49 Identities=24% Similarity=0.539 Sum_probs=37.2
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+|.+|+..... ....|+.|+.|+.+||..||.|++.-. ...++...|.|
T Consensus 18 ~C~vC~~~~~~--~~~~ll~CD~C~~~yH~~Cl~Ppl~~~---~~~~p~g~W~C 66 (88)
T 1wev_A 18 ACVVCRQMTVA--SGNQLVECQECHNLYHQDCHKPQVTDK---EVNDPRLVWYC 66 (88)
T ss_dssp SCSSSCCCCCC--TTCCEEECSSSCCEEETTTSSSCCCHH---HHHCTTCCCCC
T ss_pred cCCCCCCCCCC--CCCceEECCCCCCeEcCccCCCccccc---ccCCCCCCeeC
Confidence 59999987542 124699999999999999999987511 01367789997
No 49
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.41 E-value=3.4e-05 Score=66.29 Aligned_cols=45 Identities=31% Similarity=0.888 Sum_probs=34.7
Q ss_pred CcccccccC--CCCeeccccc-cC-CccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 30 DSVCSFCDN--GGDLLCCEGR-CL-RSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 30 DdVCaIC~d--GGELLCCDGs-C~-RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
..+| +|++ .|+||.|++. |. ++||+. | ++++.. +.+.|+|+.|..
T Consensus 10 ~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~--------C--vgl~~~---p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFA--------C--VGLTTK---PRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETG--------G--GTCSSC---CSSCCCCHHHHC
T ss_pred CCEE-ECCCcCCCCEEEeCCCCCCCceEehh--------c--CCCCcC---CCCCEECcCccC
Confidence 4678 8988 6899999941 77 799999 5 556553 358999999964
No 50
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.41 E-value=7.1e-05 Score=76.96 Aligned_cols=40 Identities=25% Similarity=0.810 Sum_probs=34.7
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+|.+|+.+++ |+.|+.|+.+||..||.|++. .+|.+.|.|
T Consensus 9 ~C~~C~~~g~-------ll~Cd~C~~~~H~~Cl~p~l~-------~~p~~~W~C 48 (207)
T 3u5n_A 9 WCAVCQNGGD-------LLCCEKCPKVFHLTCHVPTLL-------SFPSGDWIC 48 (207)
T ss_dssp SBTTTCCCEE-------EEECSSSSCEECTTTSSSCCS-------SCCSSCCCC
T ss_pred CCCCCCCCCc-------eEEcCCCCCccCCccCCCCCC-------CCCCCCEEe
Confidence 5899987763 999999999999999999875 567889998
No 51
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.38 E-value=7.2e-05 Score=76.55 Aligned_cols=40 Identities=18% Similarity=0.657 Sum_probs=34.7
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+|.+|+.++ .|+.|+.|+++||..|+.|++. .++.+.|.|
T Consensus 4 ~C~~C~~~g-------~ll~Cd~C~~~~H~~Cl~p~l~-------~~p~g~W~C 43 (189)
T 2ro1_A 4 ICRVCQKPG-------DLVMCNQCEFCFHLDCHLPALQ-------DVPGEEWSC 43 (189)
T ss_dssp CBTTTCCCS-------SCCCCTTTCCBCCSTTSTTCCS-------SCCCTTCCT
T ss_pred cCccCCCCC-------ceeECCCCCchhccccCCCCcc-------cCCCCCCCC
Confidence 599999775 3899999999999999999875 567889997
No 52
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.36 E-value=4.3e-05 Score=65.63 Aligned_cols=44 Identities=30% Similarity=0.850 Sum_probs=35.0
Q ss_pred CcccccccC--CCCeeccccc--cC-CccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 30 DSVCSFCDN--GGDLLCCEGR--CL-RSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 30 DdVCaIC~d--GGELLCCDGs--C~-RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
..+| +|++ .|+||+|+ . |+ .+||+. | ++++.. +.+.|+|+.|..
T Consensus 9 ~~yC-~C~~~~~g~mi~CD-~~~C~~~wfH~~--------C--vgl~~~---p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSYGEMIGCD-NPDCPIEWFHFA--------C--VDLTTK---PKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECCSEEEECS-CTTCSSCEEETG--------G--GTCSSC---CSSCCCCHHHHC
T ss_pred CcEE-ECCCCCCCCeeEee-CCCCCCCCEecc--------c--CCcccC---CCCCEECcCccC
Confidence 4678 8998 78999999 6 88 699999 5 556553 347899999964
No 53
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.35 E-value=0.00056 Score=79.32 Aligned_cols=152 Identities=17% Similarity=0.289 Sum_probs=84.7
Q ss_pred ChhHHhHHHHHhhhcccc-c----cccccccccc------------ccCcccchhhhHHHHHHhhcccccCCCcEEeccC
Q 000955 482 EPEVLSQIFKWKNKLKVY-L----APFLHGMRYT------------SFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCC 544 (1210)
Q Consensus 482 ~p~vL~Ql~~wk~kL~vy-l----aP~l~G~ryt------------S~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfcc 544 (1210)
++..|.+|..-=+++... + .+=+.|.=|- ..|.+||-.+-.+.+|+.+.. .+|++|+|+||
T Consensus 101 ~~~~L~~li~~i~~~~~~~~~~~~~~d~lG~~YE~ll~~~a~~~~~~~G~fyTP~~iv~~mv~~l~p--~~~~~VlDPaC 178 (541)
T 2ar0_A 101 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKP--QPREVVQDPAA 178 (541)
T ss_dssp CHHHHHHHHHHHHTCCC--------------------------------CCCCCHHHHHHHHHHHCC--CTTCCEEETTC
T ss_pred CHHHHHHHHHHHhhcCCcccccccChhHHHHHHHHHHHHHHHhccccCCeeeCCHHHHHHHHHHhcc--CCCCeEecCCc
Confidence 456777776654554431 1 3444454443 358899988766667766654 57899999999
Q ss_pred CcchHHHHHHHHHHhhCCc--------------ccccccccc-------------CC-CC----CccccccccccccCCC
Q 000955 545 GANDFSCLMKKKLDETGKN--------------CLYKNYDIL-------------PA-KN----DFNFEKRDWMTVEPKE 592 (1210)
Q Consensus 545 g~n~fs~lmk~kl~~~gk~--------------c~~kn~dl~-------------~~-kn----~f~Fe~~dw~~v~~~e 592 (1210)
|+-.|.-.+-+.+.+.+.. ..+--.|+- .. .+ .+++...|-+...+..
T Consensus 179 GSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~ 258 (541)
T 2ar0_A 179 GTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN 258 (541)
T ss_dssp TTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHT
T ss_pred ccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCccccccc
Confidence 9999988777766543321 111111210 00 11 2566666655443222
Q ss_pred CCCCCeeeeeeCCCccchh-------------hhHHHHHHhhhcc-CCc-EEEEecCCcc
Q 000955 593 LAPGSRLIMGLNPPFGVKA-------------GLANKFINKALEF-NPK-LLILIVPPET 637 (1210)
Q Consensus 593 lp~G~~LimgLnPPfg~~a-------------~lAnkFi~kal~F-~Pk-liilI~P~~t 637 (1210)
.. .=-+|++ ||||+.+. .....||.+++.. +|. .+++|+|...
T Consensus 259 ~~-~fD~Vv~-NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~ 316 (541)
T 2ar0_A 259 LP-KAHIVAT-NPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 316 (541)
T ss_dssp SC-CEEEEEE-CCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred cc-CCeEEEE-CCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcc
Confidence 11 2236676 99999753 2344799998864 665 7788888763
No 54
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.30 E-value=7.6e-05 Score=65.97 Aligned_cols=46 Identities=24% Similarity=0.691 Sum_probs=34.4
Q ss_pred cccccccC---CCCeeccccccCCccccccccCcccccccCCCChhhhhccc-cccccchhh
Q 000955 31 SVCSFCDN---GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAML-NFFCKNCEY 88 (1210)
Q Consensus 31 dVCaIC~d---GGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~-sW~CpnCe~ 88 (1210)
-+|.+|++ +|+||.|+ .|.++||+. |+.+.++.. +.+ .|+|+.|..
T Consensus 19 C~C~~C~~~~~~~~ll~CD-~C~~~yH~~--------Cl~Ppl~~~---P~g~~W~C~~C~~ 68 (70)
T 3asl_A 19 CACHLCGGRQDPDKQLMCD-ECDMAFHIY--------CLDPPLSSV---PSEDEWYCPECRN 68 (70)
T ss_dssp TSBTTTCCCSCGGGEEECT-TTCCEEEGG--------GSSSCCSSC---CSSSCCCCTTTSC
T ss_pred CCCcCCCCcCCCCCEEEcC-CCCCceecc--------cCCCCcCCC---CCCCCcCCcCccC
Confidence 36778884 67999999 599999999 544445432 356 999999963
No 55
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.30 E-value=9.8e-05 Score=68.65 Aligned_cols=45 Identities=31% Similarity=0.906 Sum_probs=34.2
Q ss_pred CcccccccC--CCCeeccccc-cC-CccccccccCcccccccCCCChhhhhccccccccc-hhh
Q 000955 30 DSVCSFCDN--GGDLLCCEGR-CL-RSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKN-CEY 88 (1210)
Q Consensus 30 DdVCaIC~d--GGELLCCDGs-C~-RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~Cpn-Ce~ 88 (1210)
..+| +|.+ .|+||+||+. |+ .+||+. | ++|+.. +.+.|+|+. |..
T Consensus 26 ~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~--------C--Vgl~~~---p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSYGPMVACDNPACPFEWFHYG--------C--VGLKQA---PKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCSSSEECCCSSSCSCSCEETT--------T--SSCSSC---TTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCCCCEEEecCCCCccccCcCc--------c--CCCCcC---CCCCccCChhhcc
Confidence 5778 8986 6799999942 55 899999 5 566653 347999999 853
No 56
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=97.26 E-value=0.00017 Score=61.98 Aligned_cols=48 Identities=23% Similarity=0.604 Sum_probs=36.3
Q ss_pred ccccccCCCccCCCCCCceeeccccCcccccccCCCCccccccccccc-ccccccc
Q 000955 157 HKCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGI-ITRAWEG 211 (1210)
Q Consensus 157 H~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~I-p~RAW~C 211 (1210)
..|.+|+..... .+..|+.|+.|+.+||..|+.+++.. +.+ +...|.|
T Consensus 7 ~~C~vC~~~~~~--~~~~ll~Cd~C~~~~H~~C~~p~l~~-----~~~~p~~~W~C 55 (66)
T 2yt5_A 7 GVCTICQEEYSE--APNEMVICDKCGQGYHQLCHTPHIDS-----SVIDSDEKWLC 55 (66)
T ss_dssp CCBSSSCCCCCB--TTBCEEECSSSCCEEETTTSSSCCCH-----HHHHSSCCCCC
T ss_pred CCCCCCCCCCCC--CCCCEEECCCCChHHHhhhCCCcccc-----cccCCCCCEEC
Confidence 469999987432 23479999999999999999998752 113 6788997
No 57
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.19 E-value=0.00015 Score=77.06 Aligned_cols=47 Identities=23% Similarity=0.656 Sum_probs=33.6
Q ss_pred CcccccccC---CCCeeccccccCCccccccccCcccccccCCCChhhhhccc-cccccchhh
Q 000955 30 DSVCSFCDN---GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAML-NFFCKNCEY 88 (1210)
Q Consensus 30 DdVCaIC~d---GGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~-sW~CpnCe~ 88 (1210)
+..|.+|+. ++.||+|+ .|.++||+. |+.+.++.. |.+ .|+|+.|..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD-~C~~~yH~~--------CL~PPL~~v---P~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCD-ECDMAFHIY--------CLDPPLSSV---PSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECS-SSCCEECSC--------C--CCCCSC---CSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcC-CCCcceeCc--------cCCCCcccC---CCCCCCCCcCCcC
Confidence 557999987 67899999 599999999 444445432 456 899999963
No 58
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.17 E-value=0.00021 Score=61.21 Aligned_cols=49 Identities=27% Similarity=0.732 Sum_probs=37.4
Q ss_pred CcccccccCC----CCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 30 DSVCSFCDNG----GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 30 DdVCaIC~dG----GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
+.+|.+|+.. +.+|.|+ .|.++||.. | ++++..+......|+|+.|..+
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~--------C--vgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCD-LCEMWFHGK--------C--VKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECS-SSCCEEETT--------T--TTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCccCCCCCEEEcc-CCCCCCCcc--------c--cCcChhHhcCCCcEECCCCcCc
Confidence 5789999863 5799999 699999999 5 5565544333478999999753
No 59
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.16 E-value=0.00015 Score=64.22 Aligned_cols=51 Identities=25% Similarity=0.745 Sum_probs=36.9
Q ss_pred cccCcccccccCC---CCeeccccccCCccccccccCcccccccCCCChhhhh----ccccccccchhhc
Q 000955 27 ELFDSVCSFCDNG---GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVE----AMLNFFCKNCEYK 89 (1210)
Q Consensus 27 DlnDdVCaIC~dG---GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evq----p~~sW~CpnCe~g 89 (1210)
|.+..+| +|+.. +.+|.|+ .|..+||.. | ++++..... ....|+|+.|...
T Consensus 13 d~~~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~--------C--vgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 13 DPNALYC-ICRQPHNNRFMICCD-RCEEWFHGD--------C--VGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CTTCCCS-TTCCCCCSSCEEECS-SSCCEEEHH--------H--HSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCCEE-ECCCccCCCCEEEeC-CCCCcEeCe--------E--EccchhhhhhccCCCCeEECcCCcCc
Confidence 3345778 79874 5799999 699999999 5 556654321 2478999999754
No 60
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=97.15 E-value=0.001 Score=77.11 Aligned_cols=46 Identities=20% Similarity=0.363 Sum_probs=37.6
Q ss_pred cCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHh
Q 000955 512 FGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDE 559 (1210)
Q Consensus 512 ~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~ 559 (1210)
.|.+||=.+-.+-+|+-|-. ++|++|+|+|||+-.|.--.-+.|.+
T Consensus 196 ~GqfyTP~~Vv~lmv~l~~p--~~~~~I~DPacGsGgfL~~a~~~l~~ 241 (530)
T 3ufb_A 196 SGEFYTPRPVVRFMVEVMDP--QLGESVLDPACGTGGFLVEAFEHLER 241 (530)
T ss_dssp CCCCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHT
T ss_pred CceECCcHHHHHHHHHhhcc--CCCCEEEeCCCCcchHHHHHHHHHHH
Confidence 59999998888888887765 67999999999999997655555544
No 61
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.14 E-value=0.00014 Score=65.17 Aligned_cols=51 Identities=25% Similarity=0.631 Sum_probs=35.8
Q ss_pred ccCcccccccCC---CCeecccc-ccCCccccccccCcccccccCCCChhhh----hccccccccchhhc
Q 000955 28 LFDSVCSFCDNG---GDLLCCEG-RCLRSFHATIDAGEESHCASLGLTKDEV----EAMLNFFCKNCEYK 89 (1210)
Q Consensus 28 lnDdVCaIC~dG---GELLCCDG-sC~RSFH~~C~dGeeS~ClsLGLTe~ev----qp~~sW~CpnCe~g 89 (1210)
....+| +|+.. |.+|.|++ .|..+||.. | ++++..+. .....|+|+.|...
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~--------C--Vgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVG--------C--VILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHH--------H--HSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCE--------E--EccccccccccccCCCCEECCCCCcc
Confidence 345677 78864 78999994 599999999 5 44444321 12468999999753
No 62
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.14 E-value=0.00058 Score=73.56 Aligned_cols=122 Identities=14% Similarity=0.234 Sum_probs=69.3
Q ss_pred ccCcccchhhhHHHHHHhhcccc--cCCCcEEeccCCcchHHHHHHHHHHhh-CCccccccccccC------------CC
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWYV--NDGDMIVDFCCGANDFSCLMKKKLDET-GKNCLYKNYDILP------------AK 575 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~yv--~~gd~ivdfccg~n~fs~lmk~kl~~~-gk~c~~kn~dl~~------------~k 575 (1210)
.+|.|||-.+-..-++.-|-++. .++.+|+|+|||+-.|...+.+.+.+. ++...+--.|+-+ ..
T Consensus 104 ~~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g 183 (344)
T 2f8l_A 104 QVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR 183 (344)
T ss_dssp CGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred ccCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC
Confidence 35777876644332233333332 357899999999999998887766432 1111111111100 01
Q ss_pred CCccccccccccccCCCCCCCCeeeeeeCCCccchhh-----------------hHHHHHHhhhcc-CCc-EEEEecCCc
Q 000955 576 NDFNFEKRDWMTVEPKELAPGSRLIMGLNPPFGVKAG-----------------LANKFINKALEF-NPK-LLILIVPPE 636 (1210)
Q Consensus 576 n~f~Fe~~dw~~v~~~elp~G~~LimgLnPPfg~~a~-----------------lAnkFi~kal~F-~Pk-liilI~P~~ 636 (1210)
-+.+|...|+++..+ ...=-+|++ |||||.... +...||.+++.. +|. .+++|+|..
T Consensus 184 ~~~~i~~~D~l~~~~---~~~fD~Ii~-NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 184 QKMTLLHQDGLANLL---VDPVDVVIS-DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp CCCEEEESCTTSCCC---CCCEEEEEE-ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCceEEECCCCCccc---cCCccEEEE-CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 146677777765322 122347777 999986421 123688888764 665 777777765
No 63
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.11 E-value=0.00019 Score=64.78 Aligned_cols=56 Identities=25% Similarity=0.625 Sum_probs=44.2
Q ss_pred cccccccchhhccccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCc
Q 000955 78 MLNFFCKNCEYKQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH 157 (1210)
Q Consensus 78 ~~sW~CpnCe~gQHqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH 157 (1210)
...|+|..|. |.+|++.+. ...++.|+ .|.+.||..|+.+.+. .+..+..|.||.+
T Consensus 19 ~~~W~C~~C~-----C~vC~~~~d-----~~~ll~CD--~C~~~yH~~Cl~PpL~------------~~P~g~~W~C~~C 74 (77)
T 3shb_A 19 DVNRLCRVCA-----CHLCGGRQD-----PDKQLMCD--ECDMAFHIYCLDPPLS------------SVPSEDEWYCPEC 74 (77)
T ss_dssp CTTSCCTTTS-----BTTTCCCSC-----GGGEEECT--TTCCEEETTTSSSCCS------------SCCSSSCCCCTTT
T ss_pred CCCCCCCCCc-----CCccCCCCC-----CcceeEeC--CCCCccCcccCCCccc------------CCCCCCceECcCc
Confidence 4689999993 999998764 25799999 9999999999997652 2455555999874
No 64
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.08 E-value=0.00078 Score=73.13 Aligned_cols=118 Identities=25% Similarity=0.426 Sum_probs=75.1
Q ss_pred cccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCCC----CCcccccccc
Q 000955 510 TSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPAK----NDFNFEKRDW 585 (1210)
Q Consensus 510 tS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~k----n~f~Fe~~dw 585 (1210)
...|.+||-.+-.+.+++.+.. ..+++|+|++||.-.|...+.+++ +..+.+--.|+=+.- ...+|...|+
T Consensus 16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~---~~~~~i~gvDi~~~~~~~a~~~~~~~~D~ 90 (421)
T 2ih2_A 16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAH---GTAYRFVGVEIDPKALDLPPWAEGILADF 90 (421)
T ss_dssp -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHH---CSCSEEEEEESCTTTCCCCTTEEEEESCG
T ss_pred ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHh---CCCCeEEEEECCHHHHHhCCCCcEEeCCh
Confidence 4679999988888888887753 567899999999999999987754 222233333332111 3566777777
Q ss_pred ccccCCCCCCCCeeeeeeCCCccchhh----------------------------hHHHHHHhhhcc-CC-cEEEEecCC
Q 000955 586 MTVEPKELAPGSRLIMGLNPPFGVKAG----------------------------LANKFINKALEF-NP-KLLILIVPP 635 (1210)
Q Consensus 586 ~~v~~~elp~G~~LimgLnPPfg~~a~----------------------------lAnkFi~kal~F-~P-kliilI~P~ 635 (1210)
.+..+. ..=-+|++ ||||+.... +...|+.+|+.. +| -.+++|+|.
T Consensus 91 ~~~~~~---~~fD~Ii~-NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 91 LLWEPG---EAFDLILG-NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp GGCCCS---SCEEEEEE-CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred hhcCcc---CCCCEEEE-CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 765432 23347777 999985433 223788888764 33 367888887
Q ss_pred c
Q 000955 636 E 636 (1210)
Q Consensus 636 ~ 636 (1210)
.
T Consensus 167 ~ 167 (421)
T 2ih2_A 167 T 167 (421)
T ss_dssp G
T ss_pred H
Confidence 5
No 65
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=96.99 E-value=0.00095 Score=68.48 Aligned_cols=124 Identities=15% Similarity=0.263 Sum_probs=80.2
Q ss_pred cccCccc-chhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH-HhhCCccccccccccCC----CCCcccccc
Q 000955 510 TSFGRHF-TKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL-DETGKNCLYKNYDILPA----KNDFNFEKR 583 (1210)
Q Consensus 510 tS~grhF-Tk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl-~~~gk~c~~kn~dl~~~----kn~f~Fe~~ 583 (1210)
-+||.|| +....+..|++.+. +.+|++|+|+.||.-.++..+.++. .-+|.+..-...++... .+.+.|...
T Consensus 5 k~~gq~fl~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~ 82 (245)
T 1yub_A 5 IKYSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQ 82 (245)
T ss_dssp CCSCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCS
T ss_pred cccCCCCCCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEEC
Confidence 3789966 56777888998886 5789999999999999999887652 11233333223333321 134566667
Q ss_pred ccccccCCCCCC-CCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecCCc-cccccc
Q 000955 584 DWMTVEPKELAP-GSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPE-TERLDR 642 (1210)
Q Consensus 584 dw~~v~~~elp~-G~~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P~~-t~rld~ 642 (1210)
|+.++. ++. ++.+|++ ||||.+...+..+++.| ......+|+++.+ ..|+=+
T Consensus 83 D~~~~~---~~~~~~f~vv~-n~Py~~~~~~~~~~~~~---~~~~~~~lm~q~e~a~rll~ 136 (245)
T 1yub_A 83 DILQFQ---FPNKQRYKIVG-NIPYHLSTQIIKKVVFE---SRASDIYLIVEEGFYKRTLD 136 (245)
T ss_dssp CCTTTT---CCCSSEEEEEE-ECCSSSCHHHHHHHHHH---CCCEEEEEEEESSHHHHHHC
T ss_pred ChhhcC---cccCCCcEEEE-eCCccccHHHHHHHHhC---CCCCeEEEEeeHHHHHHHhC
Confidence 776654 332 5555555 99999877776666655 3345566667776 555543
No 66
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=96.96 E-value=0.0012 Score=73.83 Aligned_cols=120 Identities=20% Similarity=0.319 Sum_probs=77.5
Q ss_pred ccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhC---------Cccccccccc----------
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETG---------KNCLYKNYDI---------- 571 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~g---------k~c~~kn~dl---------- 571 (1210)
..|.|||-.+-.+.+++.+.+ .+|++|+|++||+-.|...+.+.+.+.. ....+--.|+
T Consensus 149 ~~G~fyTP~~v~~~mv~~l~~--~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~ 226 (445)
T 2okc_A 149 GAGQYFTPRPLIQAMVDCINP--QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASM 226 (445)
T ss_dssp CCGGGCCCHHHHHHHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred cCCcccCcHHHHHHHHHHhCC--CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHH
Confidence 578999998877778887754 5789999999999999887777653221 0111111121
Q ss_pred ----cCCC-CCccccccccccccCCCCCCCCeeeeeeCCCccchhhh----------------HHHHHHhhhc-cCCc-E
Q 000955 572 ----LPAK-NDFNFEKRDWMTVEPKELAPGSRLIMGLNPPFGVKAGL----------------ANKFINKALE-FNPK-L 628 (1210)
Q Consensus 572 ----~~~k-n~f~Fe~~dw~~v~~~elp~G~~LimgLnPPfg~~a~l----------------AnkFi~kal~-F~Pk-l 628 (1210)
-.-. +..++...|.+.....+ .=-+|++ ||||+..... ...||.+++. .+|. .
T Consensus 227 nl~l~g~~~~~~~i~~gD~l~~~~~~---~fD~Iv~-NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~ 302 (445)
T 2okc_A 227 NLYLHGIGTDRSPIVCEDSLEKEPST---LVDVILA-NPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGR 302 (445)
T ss_dssp HHHHTTCCSSCCSEEECCTTTSCCSS---CEEEEEE-CCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred HHHHhCCCcCCCCEeeCCCCCCcccC---CcCEEEE-CCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCE
Confidence 1101 14667777766654331 2347777 9999975432 1378999876 4665 7
Q ss_pred EEEecCCc
Q 000955 629 LILIVPPE 636 (1210)
Q Consensus 629 iilI~P~~ 636 (1210)
+++|+|..
T Consensus 303 ~a~V~p~~ 310 (445)
T 2okc_A 303 AAVVLPDN 310 (445)
T ss_dssp EEEEEEHH
T ss_pred EEEEECCc
Confidence 77888864
No 67
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.96 E-value=0.00015 Score=72.14 Aligned_cols=49 Identities=24% Similarity=0.735 Sum_probs=37.1
Q ss_pred cCcccccccCC----CCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 29 FDSVCSFCDNG----GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 29 nDdVCaIC~dG----GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
...+| +|+.+ |.+|+|+ .|.++||.. | ++++..+....+.|+|+.|...
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd-~C~~WfH~~--------C--v~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCD-RCQNWYHGR--------C--VGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECT-TTCCEEEHH--------H--HTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECC-CCCchhChh--------h--cCCchhhccCccCeecCCCcch
Confidence 35789 99875 4699999 699999999 5 4565544334579999999753
No 68
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.92 E-value=0.0014 Score=67.81 Aligned_cols=120 Identities=18% Similarity=0.330 Sum_probs=74.8
Q ss_pred cccCcccch-hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccc-----------cCCCCC
Q 000955 510 TSFGRHFTK-VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDI-----------LPAKND 577 (1210)
Q Consensus 510 tS~grhFTk-~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl-----------~~~kn~ 577 (1210)
.+||.||.. ..-++.|++.+. +.+|++|+|+.||.-.++..+-++. +..--.|+ +...+.
T Consensus 6 k~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~ 77 (244)
T 1qam_A 6 IKHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC------NFVTAIEIDHKLCKTTENKLVDHDN 77 (244)
T ss_dssp ----CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS------SEEEEECSCHHHHHHHHHHTTTCCS
T ss_pred ccCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC------CeEEEEECCHHHHHHHHHhhccCCC
Confidence 378999954 566677777775 4689999999999999998886542 11111221 111135
Q ss_pred ccccccccccccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecCCc-ccccccc
Q 000955 578 FNFEKRDWMTVEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPE-TERLDRK 643 (1210)
Q Consensus 578 f~Fe~~dw~~v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P~~-t~rld~k 643 (1210)
+.|...|.+.+...+ .++..|++ ||||.+-..+..+++.+ ....-.+|+++.| .+|+=..
T Consensus 78 v~~~~~D~~~~~~~~--~~~~~vv~-nlPy~~~~~~l~~~l~~---~~~~~~~lm~q~e~a~rll~~ 138 (244)
T 1qam_A 78 FQVLNKDILQFKFPK--NQSYKIFG-NIPYNISTDIIRKIVFD---SIADEIYLIVEYGFAKRLLNT 138 (244)
T ss_dssp EEEECCCGGGCCCCS--SCCCEEEE-ECCGGGHHHHHHHHHHS---CCCSEEEEEEEHHHHHHHTCT
T ss_pred eEEEEChHHhCCccc--CCCeEEEE-eCCcccCHHHHHHHHhc---CCCCeEEEEEEHHHHHHHhcC
Confidence 677777777765421 23445666 99998766665555554 2445667778887 6777654
No 69
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.89 E-value=0.00037 Score=65.84 Aligned_cols=50 Identities=28% Similarity=0.611 Sum_probs=38.6
Q ss_pred CcccccccCC----CCeeccccccCCccccccccCcccccccCCCChhhhh-----ccccccccchhhc
Q 000955 30 DSVCSFCDNG----GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVE-----AMLNFFCKNCEYK 89 (1210)
Q Consensus 30 DdVCaIC~dG----GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evq-----p~~sW~CpnCe~g 89 (1210)
...|.+|.+. ++++.|++.|.++||.. | +++++...+ +...|+|+.|...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~--------C--Vglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRE--------C--TGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGG--------G--TTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccc--------c--CCcCHHHHHhhccCCCCCEECccccCc
Confidence 4679999986 57888875699999999 5 677764432 3479999999754
No 70
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=96.86 E-value=0.0013 Score=76.61 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=73.3
Q ss_pred ccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCC-----------ccccccccccC------
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGK-----------NCLYKNYDILP------ 573 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk-----------~c~~kn~dl~~------ 573 (1210)
..|.|||-.+-.+-+|+-|-. ++| +|+|+|||+-.|.--+.+.+.+.+. ...+-=.||-+
T Consensus 223 ~~G~fyTP~~Vv~lmv~ll~p--~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA 299 (544)
T 3khk_A 223 QGGQYYTPKSIVTLIVEMLEP--YKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLA 299 (544)
T ss_dssp CSTTTCCCHHHHHHHHHHHCC--CSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHH
T ss_pred cCCeEeCCHHHHHHHHHHHhc--CCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHH
Confidence 579999999888888888765 345 9999999999998766555543211 11111112111
Q ss_pred ------C--CCCccccccccccccCCCCCCC-CeeeeeeCCCccchh----h------------------hH------HH
Q 000955 574 ------A--KNDFNFEKRDWMTVEPKELAPG-SRLIMGLNPPFGVKA----G------------------LA------NK 616 (1210)
Q Consensus 574 ------~--kn~f~Fe~~dw~~v~~~elp~G-~~LimgLnPPfg~~a----~------------------lA------nk 616 (1210)
. ...+++...|.+.-.. ++.+ =-+||+ ||||+.+. . ++ --
T Consensus 300 ~~Nl~l~gi~~~i~i~~gDtL~~~~--~~~~~fD~Iv~-NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~ 376 (544)
T 3khk_A 300 AMNMVIRGIDFNFGKKNADSFLDDQ--HPDLRADFVMT-NPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFA 376 (544)
T ss_dssp HHHHHHTTCCCBCCSSSCCTTTSCS--CTTCCEEEEEE-CCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHH
T ss_pred HHHHHHhCCCcccceeccchhcCcc--cccccccEEEE-CCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHH
Confidence 0 1123336666654422 1222 247777 99999741 0 11 14
Q ss_pred HHHhhhcc-CCc-EEEEecCCcc
Q 000955 617 FINKALEF-NPK-LLILIVPPET 637 (1210)
Q Consensus 617 Fi~kal~F-~Pk-liilI~P~~t 637 (1210)
||.|++.. +|. .+++|+|...
T Consensus 377 Fl~~~l~~Lk~gGr~aiVlP~g~ 399 (544)
T 3khk_A 377 WMLHMLYHLAPTGSMALLLANGS 399 (544)
T ss_dssp HHHHHHHTEEEEEEEEEEEETHH
T ss_pred HHHHHHHHhccCceEEEEecchh
Confidence 99998876 454 6778888754
No 71
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.78 E-value=0.0005 Score=61.15 Aligned_cols=43 Identities=28% Similarity=0.608 Sum_probs=34.2
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
.|.+|+..+.. .+..|+.|+.|+.+||..|+.++. +|...|.|
T Consensus 18 ~C~vC~~~~s~--~~~~ll~CD~C~~~~H~~Cl~~~~---------vP~g~W~C 60 (71)
T 2ku3_A 18 VCSICMDGESQ--NSNVILFCDMCNLAVHQECYGVPY---------IPEGQWLC 60 (71)
T ss_dssp SCSSSCCCCCC--SSSCEEECSSSCCEEEHHHHTCSS---------CCSSCCCC
T ss_pred CCCCCCCCCCC--CCCCEEECCCCCCccccccCCCCc---------CCCCCcCC
Confidence 59999887522 234799999999999999998863 46688987
No 72
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=96.73 E-value=0.0012 Score=76.83 Aligned_cols=126 Identities=13% Similarity=0.194 Sum_probs=74.5
Q ss_pred cccCcccchhhhHHHHHHhhcccc--cCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC------------C-
Q 000955 510 TSFGRHFTKVDKLQAIVDKLHWYV--NDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP------------A- 574 (1210)
Q Consensus 510 tS~grhFTk~ekl~~i~~~Lh~yv--~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~------------~- 574 (1210)
.+.|.+||-.+-.+-+|+-+.... .+|.+|+|+|||+-.|.--+.+.|...+. ..+-=.|+-+ .
T Consensus 194 k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~-~~i~G~Eid~~~~~lA~~Nl~l~g 272 (542)
T 3lkd_A 194 KKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQT-VVYFGQELNTSTYNLARMNMILHG 272 (542)
T ss_dssp -CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTT-CEEEEEESCHHHHHHHHHHHHHTT
T ss_pred ccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccC-ceEEEEECcHHHHHHHHHHHHHcC
Confidence 367999999988777887776543 47899999999999998776665532221 1111111100 0
Q ss_pred C--CCcccccccccccc-CCCCCCCCeeeeeeCCCccchhh----------------hH------HHHHHhhhcc-C-C-
Q 000955 575 K--NDFNFEKRDWMTVE-PKELAPGSRLIMGLNPPFGVKAG----------------LA------NKFINKALEF-N-P- 626 (1210)
Q Consensus 575 k--n~f~Fe~~dw~~v~-~~elp~G~~LimgLnPPfg~~a~----------------lA------nkFi~kal~F-~-P- 626 (1210)
- +++++...|.+... |......=-+||+ ||||+.+.. ++ --||.|++.. + |
T Consensus 273 i~~~~~~I~~gDtL~~d~p~~~~~~fD~Iva-NPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g 351 (542)
T 3lkd_A 273 VPIENQFLHNADTLDEDWPTQEPTNFDGVLM-NPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN 351 (542)
T ss_dssp CCGGGEEEEESCTTTSCSCCSSCCCBSEEEE-CCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT
T ss_pred CCcCccceEecceecccccccccccccEEEe-cCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc
Confidence 0 23344444544432 2111122347888 999985431 00 1389998876 3 3
Q ss_pred cEEEEecCCcc
Q 000955 627 KLLILIVPPET 637 (1210)
Q Consensus 627 kliilI~P~~t 637 (1210)
-.+++|+|...
T Consensus 352 Gr~a~VlP~g~ 362 (542)
T 3lkd_A 352 GVMAIVLPHGV 362 (542)
T ss_dssp CEEEEEEETHH
T ss_pred eeEEEEecchH
Confidence 37788888764
No 73
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.67 E-value=0.00065 Score=59.79 Aligned_cols=48 Identities=25% Similarity=0.683 Sum_probs=34.0
Q ss_pred cCcccccccCC---C-CeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 29 FDSVCSFCDNG---G-DLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 29 nDdVCaIC~dG---G-ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
...+| +|+.. | .+|.|+ .|..+||.. | ++++.... ....|+|+.|..+
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd-~C~~W~H~~--------C--vg~~~~~~-~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACD-GCGVWHHTR--------C--IGINNADA-LPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECS-SSCEEEETT--------T--TTCCTTSC-CCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECC-CCCCccCCe--------e--eccCcccc-CCCcEECCCccCC
Confidence 34678 68864 4 599999 699999999 5 44543211 2478999999753
No 74
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.56 E-value=0.00052 Score=60.12 Aligned_cols=48 Identities=31% Similarity=0.698 Sum_probs=36.8
Q ss_pred CcccccccCC----CCeeccccccCCccccccccCcccccccCCCChhhhh-----ccccccccchh
Q 000955 30 DSVCSFCDNG----GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVE-----AMLNFFCKNCE 87 (1210)
Q Consensus 30 DdVCaIC~dG----GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evq-----p~~sW~CpnCe 87 (1210)
...|.+|.++ ..+|.|++.|.++||.. | +|+++...+ +...|+|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~--------C--vglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRI--------C--TGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHH--------H--HTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchh--------c--cCCCHHHHHHhhccCCCcEECcCcc
Confidence 5789999985 25999996799999999 5 567765432 34599999995
No 75
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=96.54 E-value=0.002 Score=67.65 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=92.3
Q ss_pred cccCcccch-hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH--HhhCCccccccccccC--CCCCccccccc
Q 000955 510 TSFGRHFTK-VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL--DETGKNCLYKNYDILP--AKNDFNFEKRD 584 (1210)
Q Consensus 510 tS~grhFTk-~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl--~~~gk~c~~kn~dl~~--~kn~f~Fe~~d 584 (1210)
.+||.||-. ..-++.|++.+. +.+|++|+|+.||.-.+...+-++. .-++.+..-.-.++.. +..++.|...|
T Consensus 7 k~~GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D 84 (249)
T 3ftd_A 7 KSFGQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINED 84 (249)
T ss_dssp -CCCSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSC
T ss_pred CcccccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcc
Confidence 379999865 566777888775 4689999999999999988875431 0001111111111111 12356677777
Q ss_pred cccccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhccC--CcEEEEecCCcc-ccccccCCCce---------eeec
Q 000955 585 WMTVEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEFN--PKLLILIVPPET-ERLDRKESAYE---------LVWE 652 (1210)
Q Consensus 585 w~~v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F~--PkliilI~P~~t-~rld~k~~~Y~---------liwe 652 (1210)
.+.+...++.. ...|+| ||||.+ +..++.|.|+.. ..-+++++..|. +||=. ...|- .-.+
T Consensus 85 ~~~~~~~~~~~-~~~vv~-NlPy~i----~~~il~~ll~~~~~~~~~~~m~Qkeva~Rl~a-~k~yg~lsv~~q~~~~~~ 157 (249)
T 3ftd_A 85 ASKFPFCSLGK-ELKVVG-NLPYNV----ASLIIENTVYNKDCVPLAVFMVQKEVAEKLQG-KKDTGWLSVFVRTFYDVN 157 (249)
T ss_dssp TTTCCGGGSCS-SEEEEE-ECCTTT----HHHHHHHHHHTGGGCSEEEEEEEHHHHHHHHT-SSCCCHHHHHHHHHEEEE
T ss_pred hhhCChhHccC-CcEEEE-ECchhc----cHHHHHHHHhcCCCCceEEEEEeHHHHHHhhc-cccccHHHHHHHhHEEEE
Confidence 77776666643 556676 999985 445555555543 256778888876 67643 22231 1223
Q ss_pred cccccCCcceecCCCccc
Q 000955 653 DDQFLSGKSFYLPGSVDE 670 (1210)
Q Consensus 653 d~~~l~gksFYlPGsvd~ 670 (1210)
--.-+...+|+=|--||.
T Consensus 158 ~~~~v~~~~F~P~PkV~s 175 (249)
T 3ftd_A 158 YVMTVPPRFFVPPPKVQS 175 (249)
T ss_dssp EEEEECGGGEESCCSSCE
T ss_pred EEEEEChHHccCCCCCeE
Confidence 334567889997777773
No 76
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=96.53 E-value=0.00067 Score=62.33 Aligned_cols=44 Identities=27% Similarity=0.588 Sum_probs=34.5
Q ss_pred ccccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 157 HKCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 157 H~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
-.|.+|+..+.. .+..|+.|+.|+.+||..|+.+++ +|...|.|
T Consensus 26 ~~C~vC~~~~s~--~~~~ll~CD~C~~~fH~~Cl~p~~---------vP~g~W~C 69 (88)
T 2l43_A 26 AVCSICMDGESQ--NSNVILFCDMCNLAVHQECYGVPY---------IPEGQWLC 69 (88)
T ss_dssp CCCSSCCSSSSC--SEEEEEECSSSCCCCCHHHHTCSS---------CCSSCCCC
T ss_pred CcCCcCCCCCCC--CCCCEEECCCCCchhhcccCCCCc---------cCCCceEC
Confidence 469999987521 133699999999999999999864 46688997
No 77
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.45 E-value=0.0016 Score=58.17 Aligned_cols=48 Identities=23% Similarity=0.693 Sum_probs=35.8
Q ss_pred CcccccccC----CCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 30 DSVCSFCDN----GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 30 DdVCaIC~d----GGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
..+| +|+. .+.+|.|+ .|..+||.. | ++++..+......|+|+.|...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd-~C~~WfH~~--------C--vgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECG-LCQDWFHGS--------C--VGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBT-TTCCEEEHH--------H--HTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcC-CCCCcEEee--------e--cCcccccccCCCeEECCCcccc
Confidence 4566 7876 35799999 699999999 5 5666654433578999999753
No 78
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=96.44 E-value=0.0013 Score=65.68 Aligned_cols=65 Identities=23% Similarity=0.499 Sum_probs=45.7
Q ss_pred ccccccchhh-------------ccccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHh
Q 000955 79 LNFFCKNCEY-------------KQHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKS 145 (1210)
Q Consensus 79 ~sW~CpnCe~-------------gQHqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekk 145 (1210)
..|+|..|.. .+..|.+|+..| +|+.|+ .|++.||..||.+.+.+ ..+.+.
T Consensus 39 ~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG--------~LlcCD--~Cpr~Fh~~Cl~p~l~~------~~l~~i 102 (142)
T 2lbm_A 39 QVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGG--------NLICCD--FCHNAFCKKCILRNLGR------KELSTI 102 (142)
T ss_dssp TEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCCS--------SEEECS--SSCCEEEHHHHHHHTCH------HHHHHH
T ss_pred cccccHHHHHHHhcCCceecCCCCCCeecccCCCC--------cEEeCC--CCCCeeeHhhcCCCCCh------hhhhhc
Confidence 4577777765 256899998765 699999 99999999999977632 122211
Q ss_pred hccCCceecCCccc
Q 000955 146 IIAGESFTCPLHKC 159 (1210)
Q Consensus 146 IaaGksFrCPlH~C 159 (1210)
+.....|.||.|.+
T Consensus 103 ~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 103 MDENNQWYCYICHP 116 (142)
T ss_dssp HTSTTCCCCTTTCC
T ss_pred ccCCCCCEeecccC
Confidence 12345799987653
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=96.39 E-value=0.0015 Score=57.60 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=32.6
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+|.+|++..+. ..||.|+.|+.+||..||.+... ..+...|.|
T Consensus 20 ~C~~C~~~~~~----~~mi~CD~C~~wfH~~Cv~~~~~-------~~~~~~w~C 62 (75)
T 2k16_A 20 ICPGCNKPDDG----SPMIGCDDCDDWYHWPCVGIMAA-------PPEEMQWFC 62 (75)
T ss_dssp CBTTTTBCCSS----CCEEECSSSSSEEEHHHHTCSSC-------CCSSSCCCC
T ss_pred CCCCCCCCCCC----CCEEEcCCCCcccccccCCCCcc-------CCCCCCEEC
Confidence 37788887642 36999999999999999988653 233467876
No 80
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.29 E-value=0.00099 Score=70.42 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=91.9
Q ss_pred cccCcccch-hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHh-hCCccc-------cccccccCCCCCccc
Q 000955 510 TSFGRHFTK-VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDE-TGKNCL-------YKNYDILPAKNDFNF 580 (1210)
Q Consensus 510 tS~grhFTk-~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~-~gk~c~-------~kn~dl~~~kn~f~F 580 (1210)
.+||.||.. ..-+..|++.+. +.+|++|+|+.||.-.++..|-++... ++.+.. -+|+. ...++.|
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~---~~~~v~~ 79 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYN---QQKNITI 79 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHT---TCTTEEE
T ss_pred CcCCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHh---hCCCcEE
Confidence 379999975 556777888875 468999999999999999887542100 000000 01111 1245677
Q ss_pred cccccccccCCCCCC-CCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecCCcc-ccccccCC--Cc---------
Q 000955 581 EKRDWMTVEPKELAP-GSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPET-ERLDRKES--AY--------- 647 (1210)
Q Consensus 581 e~~dw~~v~~~elp~-G~~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P~~t-~rld~k~~--~Y--------- 647 (1210)
...|.+++...++.. +...|+| ||||.+-..+--++++....| .-++|++.+|. +||=.++. -|
T Consensus 80 i~~D~~~~~~~~~~~~~~~~vv~-NlPY~is~~il~~ll~~~~~~--~~~~lm~QkEva~Rl~a~pg~k~yg~lsv~~q~ 156 (255)
T 3tqs_A 80 YQNDALQFDFSSVKTDKPLRVVG-NLPYNISTPLLFHLFSQIHCI--EDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQY 156 (255)
T ss_dssp EESCTTTCCGGGSCCSSCEEEEE-ECCHHHHHHHHHHHHHTGGGE--EEEEEEEEHHHHHHHTCCTTSTTCSHHHHHHHH
T ss_pred EEcchHhCCHHHhccCCCeEEEe-cCCcccCHHHHHHHHhCCCCh--heEEEEEeHHHHHHhhCCCCCCccchhhheeee
Confidence 788888887777653 4455777 999985555545555443333 56788888886 77755421 12
Q ss_pred eeeeccccccCCcceecCCCcc
Q 000955 648 ELVWEDDQFLSGKSFYLPGSVD 669 (1210)
Q Consensus 648 ~liwed~~~l~gksFYlPGsvd 669 (1210)
-.-.+--.-+...+||=|--||
T Consensus 157 ~~~~~~~~~v~~~~F~P~PkVd 178 (255)
T 3tqs_A 157 FCDNTYLFTVSPQAFTPPPRVE 178 (255)
T ss_dssp HEEEEEEEEECGGGEESCCSSC
T ss_pred eEEEEEEEEEChHHccCCCCCe
Confidence 1122233345678898777776
No 81
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=96.25 E-value=0.0058 Score=65.40 Aligned_cols=165 Identities=19% Similarity=0.255 Sum_probs=105.2
Q ss_pred cChhHHhHHHHHhhhccccccccccccccc-ccCcccc-hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHH
Q 000955 481 CEPEVLSQIFKWKNKLKVYLAPFLHGMRYT-SFGRHFT-KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLD 558 (1210)
Q Consensus 481 c~p~vL~Ql~~wk~kL~vylaP~l~G~ryt-S~grhFT-k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~ 558 (1210)
..|..+++|.+-+ |.|-. +||.||- ...-+..|++.+. +.+| +|||+.||.-.++..|-++..
T Consensus 5 ~~~~~~~~~~~~~------------~~~~~k~~GQnfL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~~ 69 (271)
T 3fut_A 5 ASPQSVRALLERH------------GLFADKRFGQNFLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAGA 69 (271)
T ss_dssp CCHHHHHHHHHHT------------TCCCSTTSSCCEECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTTC
T ss_pred cCHHHHHHHHHhc------------CCCccccCCccccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcCC
Confidence 4566777766543 55543 8999996 5566788888886 4678 999999999999988865420
Q ss_pred h-hCCccc-------cccccccCCCCCccccccccccccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEE
Q 000955 559 E-TGKNCL-------YKNYDILPAKNDFNFEKRDWMTVEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLI 630 (1210)
Q Consensus 559 ~-~gk~c~-------~kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F~Pklii 630 (1210)
. ++.+.. -+|+ + ..++.|...|.+.+...++. ...+|+| ||||.+-..+--+++.. . ...-++
T Consensus 70 ~V~avEid~~~~~~l~~~~---~-~~~v~vi~~D~l~~~~~~~~-~~~~iv~-NlPy~iss~il~~ll~~-~--~~~~~~ 140 (271)
T 3fut_A 70 EVTAIEKDLRLRPVLEETL---S-GLPVRLVFQDALLYPWEEVP-QGSLLVA-NLPYHIATPLVTRLLKT-G--RFARLV 140 (271)
T ss_dssp CEEEEESCGGGHHHHHHHT---T-TSSEEEEESCGGGSCGGGSC-TTEEEEE-EECSSCCHHHHHHHHHH-C--CEEEEE
T ss_pred EEEEEECCHHHHHHHHHhc---C-CCCEEEEECChhhCChhhcc-CccEEEe-cCcccccHHHHHHHhcC-C--CCCEEE
Confidence 0 000000 0111 1 24577777888887766554 2456788 99999766666666655 2 225678
Q ss_pred EecCCcc-ccccccCC--Cc---------eeeeccccccCCcceecCCCcc
Q 000955 631 LIVPPET-ERLDRKES--AY---------ELVWEDDQFLSGKSFYLPGSVD 669 (1210)
Q Consensus 631 lI~P~~t-~rld~k~~--~Y---------~liwed~~~l~gksFYlPGsvd 669 (1210)
|++.+|. +||=.++. -| -.-.+--.-+...+|+=|--||
T Consensus 141 lm~QkEva~Rl~A~pg~k~yg~lSv~~q~~~~~~~~~~v~~~~F~P~PkVd 191 (271)
T 3fut_A 141 FLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVW 191 (271)
T ss_dssp EEEEHHHHHHHTCCTTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSC
T ss_pred EEeeeeeeeecccCCCCCcccHHHHHHHHHeeEEEEEEEChHHeECCCCCc
Confidence 8888887 67654421 12 1223333456678898777777
No 82
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=96.18 E-value=0.0048 Score=75.61 Aligned_cols=127 Identities=13% Similarity=0.246 Sum_probs=77.2
Q ss_pred cccCcccchhhhHHHHHHhhcccc----cCCCcEEeccCCcchHHHHHHHHHHhh------CCccccccccc--------
Q 000955 510 TSFGRHFTKVDKLQAIVDKLHWYV----NDGDMIVDFCCGANDFSCLMKKKLDET------GKNCLYKNYDI-------- 571 (1210)
Q Consensus 510 tS~grhFTk~ekl~~i~~~Lh~yv----~~gd~ivdfccg~n~fs~lmk~kl~~~------gk~c~~kn~dl-------- 571 (1210)
...|.+||-.+-..-+++-.++.+ ..|.+|+|+|||+-.|.-.+.+++.+. |.+..-..+.+
T Consensus 292 kk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~ 371 (878)
T 3s1s_A 292 GHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLL 371 (878)
T ss_dssp CCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTT
T ss_pred CcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 467999999988888877744444 458999999999999998887655311 22222111111
Q ss_pred ----cCCCCCccccccccccccCCCCCCCCeeeeeeCCCccchh----------------------------hhHHHHHH
Q 000955 572 ----LPAKNDFNFEKRDWMTVEPKELAPGSRLIMGLNPPFGVKA----------------------------GLANKFIN 619 (1210)
Q Consensus 572 ----~~~kn~f~Fe~~dw~~v~~~elp~G~~LimgLnPPfg~~a----------------------------~lAnkFi~ 619 (1210)
+..-+..++...|++...+... ..=-+|+| ||||+... .+...||.
T Consensus 372 lN~LlhGi~~~~I~~dD~L~~~~~~~-~kFDVVIg-NPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe 449 (878)
T 3s1s_A 372 FPQLVSSNNAPTITGEDVCSLNPEDF-ANVSVVVM-NPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLE 449 (878)
T ss_dssp STTTCBTTBCCEEECCCGGGCCGGGG-TTEEEEEE-CCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHH
T ss_pred HhhhhcCCCcceEEecchhccccccc-CCCCEEEE-CCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHH
Confidence 1111122455556655332211 12347888 99996511 23456888
Q ss_pred hhhcc-CC-cEEEEecCCccc
Q 000955 620 KALEF-NP-KLLILIVPPETE 638 (1210)
Q Consensus 620 kal~F-~P-kliilI~P~~t~ 638 (1210)
+|+.. +| -.+++|+|...-
T Consensus 450 ~Al~lLKpGGrLAfIlP~s~L 470 (878)
T 3s1s_A 450 LVTELVQDGTVISAIMPKQYL 470 (878)
T ss_dssp HHHHHSCTTCEEEEEEETHHH
T ss_pred HHHHhcCCCcEEEEEEChHHh
Confidence 88775 33 378888998764
No 83
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=96.05 E-value=0.0044 Score=57.77 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=28.4
Q ss_pred ccCCCccCCCCCCceeeccccCcccccccCCCCcccccccccccccccccc
Q 000955 161 ICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 161 vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+|+...+. +.||.|+.|+.+||..|+.++.. .++ ..|.|
T Consensus 32 iC~~~~~~----~~mi~Cd~C~~w~H~~C~~~~~~-------~~p-~~w~C 70 (98)
T 2lv9_A 32 ICGFTHDD----GYMICCDKCSVWQHIDCMGIDRQ-------HIP-DTYLC 70 (98)
T ss_dssp TTSCCSCS----SCEEEBTTTCBEEETTTTTCCTT-------SCC-SSBCC
T ss_pred ECCCccCC----CcEEEcCCCCCcCcCcCCCCCcc-------CCC-CCEEC
Confidence 56665442 36999999999999999988643 333 36876
No 84
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=95.95 E-value=0.004 Score=51.91 Aligned_cols=45 Identities=29% Similarity=0.749 Sum_probs=33.2
Q ss_pred ccccccCC----CCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchh
Q 000955 32 VCSFCDNG----GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCE 87 (1210)
Q Consensus 32 VCaIC~dG----GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe 87 (1210)
-|.+|..+ +.+|.|++.|..+||.. | +|++..+.. ...|+|+.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~--------C--vgl~~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQV--------C--VGVSPEMAE-NEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETT--------T--TTCCHHHHH-HSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCccc--------c--cCCCccccC-CCCEECCCCC
Confidence 36677764 35999996699999999 5 677765432 3789999884
No 85
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=95.70 E-value=0.0041 Score=54.31 Aligned_cols=47 Identities=26% Similarity=0.662 Sum_probs=32.7
Q ss_pred cccccccC---CCCeecccc-ccCCccccccccCcccccccCCCChhhhh---ccccccccchhh
Q 000955 31 SVCSFCDN---GGDLLCCEG-RCLRSFHATIDAGEESHCASLGLTKDEVE---AMLNFFCKNCEY 88 (1210)
Q Consensus 31 dVCaIC~d---GGELLCCDG-sC~RSFH~~C~dGeeS~ClsLGLTe~evq---p~~sW~CpnCe~ 88 (1210)
..| +|+. .|.+|.|++ .|..+||.. | +|++..+.. ....|+|+.|+.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~--------C--vgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLN--------C--VLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETT--------T--SCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchh--------h--CCCCcccccccCCCCcEECcCccC
Confidence 445 6754 578999995 699999999 5 455443211 125799999974
No 86
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.67 E-value=0.0032 Score=55.82 Aligned_cols=46 Identities=28% Similarity=0.894 Sum_probs=33.2
Q ss_pred CcccccccC--CCCeeccccc-c-CCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 30 DSVCSFCDN--GGDLLCCEGR-C-LRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 30 DdVCaIC~d--GGELLCCDGs-C-~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
..+| +|.+ .|.||.||+. | ..+||+. | ++++.. +.+.|+|+.|...
T Consensus 6 ~~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~--------C--vgl~~~---p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 6 SGYC-ICNQVSYGEMVGCDNQDCPIEWFHYG--------C--VGLTEA---PKGKWYCPQCTAA 55 (70)
T ss_dssp CCCS-TTSCCCCSSEECCSCTTCSCCCEEHH--------H--HTCSSC---CSSCCCCHHHHHH
T ss_pred CeEE-EcCCCCCCCEeEeCCCCCCccCCccc--------c--cccCcC---CCCCEECCCCCcc
Confidence 3566 4875 5699999953 5 3899999 5 455543 4579999999754
No 87
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=95.46 E-value=0.009 Score=58.37 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=70.8
Q ss_pred ccCcccchhhhHHHHHHhhccc-ccCCCcEEeccCCcchHHHHHHHHHH--hhCCcccc-------ccccccCCCCCccc
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWY-VNDGDMIVDFCCGANDFSCLMKKKLD--ETGKNCLY-------KNYDILPAKNDFNF 580 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~y-v~~gd~ivdfccg~n~fs~lmk~kl~--~~gk~c~~-------kn~dl~~~kn~f~F 580 (1210)
.+|.++|..+-...++..+... ..+|++|+|++||.-.|+..+.+... -+|.+..- +|...... ...|
T Consensus 24 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~ 101 (207)
T 1wy7_A 24 WLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKV 101 (207)
T ss_dssp GGTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEE
T ss_pred ceeeecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEE
Confidence 4566777776666666655443 45799999999999999988865410 01111110 11111110 3556
Q ss_pred cccccccccCCCCCCCCeeeeeeCCCccchh-hhHHHHHHhhhccCCcEEEEec--CCccc
Q 000955 581 EKRDWMTVEPKELAPGSRLIMGLNPPFGVKA-GLANKFINKALEFNPKLLILIV--PPETE 638 (1210)
Q Consensus 581 e~~dw~~v~~~elp~G~~LimgLnPPfg~~a-~lAnkFi~kal~F~PkliilI~--P~~t~ 638 (1210)
...|+.++ +..=-+|+ +||||+... .+..+|++.++..- ..++++. ++++.
T Consensus 102 ~~~d~~~~-----~~~~D~v~-~~~p~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~~~~~~ 155 (207)
T 1wy7_A 102 FIGDVSEF-----NSRVDIVI-MNPPFGSQRKHADRPFLLKAFEIS-DVVYSIHLAKPEVR 155 (207)
T ss_dssp EESCGGGC-----CCCCSEEE-ECCCCSSSSTTTTHHHHHHHHHHC-SEEEEEEECCHHHH
T ss_pred EECchHHc-----CCCCCEEE-EcCCCccccCCchHHHHHHHHHhc-CcEEEEEeCCcCCH
Confidence 66666654 22222555 599998865 45568899888877 5555544 65554
No 88
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.43 E-value=0.0052 Score=57.15 Aligned_cols=59 Identities=20% Similarity=0.430 Sum_probs=38.3
Q ss_pred cccCcccccccC--CCCeeccccccCCccccccccCcccccc--cCCCChhhhhccccccccchh
Q 000955 27 ELFDSVCSFCDN--GGDLLCCEGRCLRSFHATIDAGEESHCA--SLGLTKDEVEAMLNFFCKNCE 87 (1210)
Q Consensus 27 DlnDdVCaIC~d--GGELLCCDGsC~RSFH~~C~dGeeS~Cl--sLGLTe~evqp~~sW~CpnCe 87 (1210)
-.+|+.|.+|.. .++|+.|- .|.|.||..|+...+..-. .+..... .....-|.|..|+
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCR-vC~RvfH~~CL~r~gy~~~~~a~e~~l~-A~T~~GWSC~~Ce 74 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCR-VCTRVFHDGCLRRMGYIQGDSAAEVTEM-AHTETGWSCHYCD 74 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCS-SSSSCCCHHHHHHHTSCCCCCCCSCSCC-CSSSSSCCCTTTC
T ss_pred CCCCcccCccccccccceeccc-cccccccHhhcccccccccHHHHHHHHc-cCCCCCccccccc
Confidence 457899999995 56899998 8999999998753321100 0111110 0134679988875
No 89
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=94.77 E-value=0.016 Score=51.10 Aligned_cols=45 Identities=27% Similarity=0.672 Sum_probs=33.3
Q ss_pred CcccccccCC---CCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 30 DSVCSFCDNG---GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 30 DdVCaIC~dG---GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
..+| +|+.. +.+|.|+ .|..+||.. | ++++..++ .+.|+|+.|..
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~--------C--vgi~~~~~--~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECN-ECHTWIHLS--------C--AKIRKSNV--PEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECT-TTCCEEETT--------T--TTCCTTSC--CSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECC-CCCcccccc--------c--cCcCcccC--CCcEECCCCCC
Confidence 4567 88764 3599999 599999999 5 55554322 46899999963
No 90
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=94.76 E-value=0.023 Score=60.67 Aligned_cols=100 Identities=16% Similarity=0.263 Sum_probs=56.0
Q ss_pred ccCcccc-hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC-------------CCC
Q 000955 511 SFGRHFT-KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP-------------AKN 576 (1210)
Q Consensus 511 S~grhFT-k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~-------------~kn 576 (1210)
+||+||. ..+-+..|++.+. +.+|++|+|++||.-.|+..|-++ + +..--.|+-+ .-+
T Consensus 19 ~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~----~--~~v~~vDi~~~~~~~a~~~~~~~~~~ 90 (299)
T 2h1r_A 19 FQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL----A--KKVITIDIDSRMISEVKKRCLYEGYN 90 (299)
T ss_dssp ----CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT----S--SEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred ccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc----C--CEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 8999995 6777888888875 478999999999999999887542 1 1122222211 012
Q ss_pred CccccccccccccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhccCCc
Q 000955 577 DFNFEKRDWMTVEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEFNPK 627 (1210)
Q Consensus 577 ~f~Fe~~dw~~v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F~Pk 627 (1210)
++.|...|++.+... .=+ +|++ ||||-.-. ..+.+.|+.++.
T Consensus 91 ~v~~~~~D~~~~~~~---~~D-~Vv~-n~py~~~~----~~~~~ll~~~~~ 132 (299)
T 2h1r_A 91 NLEVYEGDAIKTVFP---KFD-VCTA-NIPYKISS----PLIFKLISHRPL 132 (299)
T ss_dssp CEEC----CCSSCCC---CCS-EEEE-ECCGGGHH----HHHHHHHHCSSC
T ss_pred ceEEEECchhhCCcc---cCC-EEEE-cCCccccc----HHHHHHHhcCCc
Confidence 455666666554332 112 5665 99998554 444555544443
No 91
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=94.67 E-value=0.009 Score=53.02 Aligned_cols=43 Identities=28% Similarity=0.736 Sum_probs=32.1
Q ss_pred cccCC----CCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 35 FCDNG----GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 35 IC~dG----GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
+|+.. +.+|.|+ .|..+||.. | +++++.+......|+|+.|..
T Consensus 14 iC~~~~~~~~~MI~Cd-~C~~WfH~~--------C--vg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECD-ACKDWFHGS--------C--VGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTTEECCTTSCEEECT-TTCCEEEHH--------H--HTCCTTTGGGBSSCCCHHHHH
T ss_pred ECCCcCCCCCCEEEcC-CCCCCEecc--------c--ccccccccCCCCEEECCCCcc
Confidence 77763 4799999 699999999 5 455554433346899999964
No 92
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=94.51 E-value=0.019 Score=56.02 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=63.1
Q ss_pred ccCcccchhhhHHHHHHhhccc-ccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC------CC--Ccccc
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWY-VNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA------KN--DFNFE 581 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~y-v~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~------kn--~f~Fe 581 (1210)
.++.++|..+-...++..+... ..+|++|+|+.||.-.|+..+.++ | ...+--.|+-+. +| +..|.
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~----~-~~~v~~vD~~~~~~~~a~~~~~~~~~~ 100 (200)
T 1ne2_A 26 YLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL----G-AESVTAFDIDPDAIETAKRNCGGVNFM 100 (200)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT----T-BSEEEEEESCHHHHHHHHHHCTTSEEE
T ss_pred ceeecCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHhcCCCEEE
Confidence 4566666655555555444322 348899999999999999988664 1 111222222110 11 45566
Q ss_pred ccccccccCCCCCCCC-eeeeeeCCCccchhh-hHHHHHHhhhccCCcEEEEecCCccc
Q 000955 582 KRDWMTVEPKELAPGS-RLIMGLNPPFGVKAG-LANKFINKALEFNPKLLILIVPPETE 638 (1210)
Q Consensus 582 ~~dw~~v~~~elp~G~-~LimgLnPPfg~~a~-lAnkFi~kal~F~PkliilI~P~~t~ 638 (1210)
..|..++ | ++ -+|+ +||||..... ...+|+..++..- ..|+++.++.+.
T Consensus 101 ~~d~~~~-----~-~~~D~v~-~~~p~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~ 151 (200)
T 1ne2_A 101 VADVSEI-----S-GKYDTWI-MNPPFGSVVKHSDRAFIDKAFETS-MWIYSIGNAKAR 151 (200)
T ss_dssp ECCGGGC-----C-CCEEEEE-ECCCC-------CHHHHHHHHHHE-EEEEEEEEGGGH
T ss_pred ECcHHHC-----C-CCeeEEE-ECCCchhccCchhHHHHHHHHHhc-CcEEEEEcCchH
Confidence 6665553 3 33 3444 5999987643 3357888888776 667777766553
No 93
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=94.33 E-value=0.02 Score=59.07 Aligned_cols=47 Identities=28% Similarity=0.758 Sum_probs=33.5
Q ss_pred cccccccCC---C----CeeccccccCCccccccccCcccccccCCCChhhhh------ccccccccchhh
Q 000955 31 SVCSFCDNG---G----DLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVE------AMLNFFCKNCEY 88 (1210)
Q Consensus 31 dVCaIC~dG---G----ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evq------p~~sW~CpnCe~ 88 (1210)
.+|.+|+.. + .+|+|+ .|.++||.. | .+++....+ ....|+|+.|..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~--------C--vgi~~~~~e~~~~~pe~~~y~Cp~C~~ 62 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSK--------C--ENLSDEMYEILSNLPESVAYTCVNCTE 62 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGG--------G--SSCCHHHHHHHHHSHHHHCCCCTTTCC
T ss_pred CcCCCCcCccCCcccCCCeEECC-CCCcccchh--------c--cccCHHHHHHhhcCCCCCeeECcCCCC
Confidence 579999863 3 399999 699999999 5 566653221 124799998863
No 94
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=94.08 E-value=0.0072 Score=59.55 Aligned_cols=45 Identities=27% Similarity=0.672 Sum_probs=34.2
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCCccccccccccc--ccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRKIAFEDKLEEGI--ITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPpIafed~~eE~I--p~RAW~C 211 (1210)
+|..|..+++ |+.|+.||++||..||.+.+...... .+ +...|.|
T Consensus 59 ~C~vC~dGG~-------LlcCd~Cpr~Fc~~Cl~~~lg~~~l~--~i~~~~~~W~C 105 (129)
T 3ql9_A 59 QCRWCAEGGN-------LICCDFCHNAFCKKCILRNLGRRELS--TIMDENNQWYC 105 (129)
T ss_dssp SCTTTCCCSE-------EEECSSSSCEEEHHHHHHHTCHHHHH--HHTCTTSCCCC
T ss_pred cCeecCCCCe-------eEecCCCchhhhHHHhCCCcchhHHH--HhccCCCCeEc
Confidence 5999998764 99999999999999999875422111 22 5678998
No 95
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=93.88 E-value=0.064 Score=56.86 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=61.9
Q ss_pred cccCcccc-hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCcccccccccc-----------C---C
Q 000955 510 TSFGRHFT-KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDIL-----------P---A 574 (1210)
Q Consensus 510 tS~grhFT-k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~-----------~---~ 574 (1210)
.+||.||. ...-+..|++.+.. .++++|||+.||.-.|+..|-++ +. ..--.|+= . .
T Consensus 4 k~~gq~fl~d~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~L~~~----~~--~v~~vD~~~~~~~~a~~~~~~~~~ 75 (285)
T 1zq9_A 4 TGIGQHILKNPLIINSIIDKAAL--RPTDVVLEVGPGTGNMTVKLLEK----AK--KVVACELDPRLVAELHKRVQGTPV 75 (285)
T ss_dssp ----CCEECCHHHHHHHHHHTCC--CTTCEEEEECCTTSTTHHHHHHH----SS--EEEEEESCHHHHHHHHHHHTTSTT
T ss_pred CCCCcCccCCHHHHHHHHHhcCC--CCCCEEEEEcCcccHHHHHHHhh----CC--EEEEEECCHHHHHHHHHHHHhcCC
Confidence 37999995 77778889888864 78999999999999999888653 11 11112211 0 0
Q ss_pred CCCccccccccccccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhcc
Q 000955 575 KNDFNFEKRDWMTVEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEF 624 (1210)
Q Consensus 575 kn~f~Fe~~dw~~v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F 624 (1210)
.+.+.|...|.+.+.. +.=+ +|++ |+||.+-..+..+++.+.-.+
T Consensus 76 ~~~v~~~~~D~~~~~~---~~fD-~vv~-nlpy~~~~~~~~~~l~~~~~~ 120 (285)
T 1zq9_A 76 ASKLQVLVGDVLKTDL---PFFD-TCVA-NLPYQISSPFVFKLLLHRPFF 120 (285)
T ss_dssp GGGEEEEESCTTTSCC---CCCS-EEEE-ECCGGGHHHHHHHHHHCSSCC
T ss_pred CCceEEEEcceecccc---hhhc-EEEE-ecCcccchHHHHHHHhcCcch
Confidence 1245566666665532 2223 5666 999996665555555544333
No 96
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=93.82 E-value=0.016 Score=67.22 Aligned_cols=46 Identities=24% Similarity=0.714 Sum_probs=34.7
Q ss_pred cccccccC----CCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 31 SVCSFCDN----GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 31 dVCaIC~d----GGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
.+| +|+. +|.+|+|+ .|..+||.. | +|++..+....+.|+|+.|..
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd-~C~~WfH~~--------C--vgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECD-ICKDWFHGS--------C--VGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp EET-TTTEECCTTSCEEEBT-TTCCEEEHH--------H--HTCCGGGGGGEEEBCCHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEcc-CCCCceeee--------e--cCcCcccccCCCEEECCCCcC
Confidence 445 8876 46799999 699999999 5 566665433357899999975
No 97
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=93.82 E-value=0.13 Score=55.47 Aligned_cols=146 Identities=18% Similarity=0.117 Sum_probs=81.5
Q ss_pred ChhHHhHHHHHhhhccccccc---ccccccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHH
Q 000955 482 EPEVLSQIFKWKNKLKVYLAP---FLHGMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLD 558 (1210)
Q Consensus 482 ~p~vL~Ql~~wk~kL~vylaP---~l~G~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~ 558 (1210)
+|++.-.+...++.+-++|-- -||-.-|-.+|..-.+......++..+.| ++|++|+|++||+-.|...+-.+.
T Consensus 149 ~pd~~i~v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~~~~--~~~~~vLD~gcGsG~~~ie~a~~~- 225 (354)
T 3tma_A 149 RPAVRVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADA--RPGMRVLDPFTGSGTIALEAASTL- 225 (354)
T ss_dssp SCSEEEEEEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHHTTC--CTTCCEEESSCTTSHHHHHHHHHH-
T ss_pred CCCEEEEEEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHHhCC--CCCCEEEeCCCCcCHHHHHHHHhh-
Confidence 566655555455555555431 23333343333333444444566777776 689999999999999988775543
Q ss_pred hhCCccccccccccCC------C-------CCccccccccccccCCCCCCCC-eeeeeeCCCccchhh-------hHHHH
Q 000955 559 ETGKNCLYKNYDILPA------K-------NDFNFEKRDWMTVEPKELAPGS-RLIMGLNPPFGVKAG-------LANKF 617 (1210)
Q Consensus 559 ~~gk~c~~kn~dl~~~------k-------n~f~Fe~~dw~~v~~~elp~G~-~LimgLnPPfg~~a~-------lAnkF 617 (1210)
+..+.+--+|+-+. + ....|...|..++.+. .+. -+|+ .|||||.+-. +-.+|
T Consensus 226 --~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~---~~~~D~Ii-~npPyg~r~~~~~~~~~~~~~~ 299 (354)
T 3tma_A 226 --GPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF---FPEVDRIL-ANPPHGLRLGRKEGLFHLYWDF 299 (354)
T ss_dssp --CTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT---CCCCSEEE-ECCCSCC----CHHHHHHHHHH
T ss_pred --CCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc---cCCCCEEE-ECCCCcCccCCcccHHHHHHHH
Confidence 12233333333210 0 1567888887776432 222 2444 5999997643 23567
Q ss_pred HHhhhcc-CCc-EEEEecCCc
Q 000955 618 INKALEF-NPK-LLILIVPPE 636 (1210)
Q Consensus 618 i~kal~F-~Pk-liilI~P~~ 636 (1210)
++.+... +|. .+++++|..
T Consensus 300 ~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 300 LRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp HHHHHHTSCTTCEEEEEESCH
T ss_pred HHHHHHhcCCCcEEEEEeCCH
Confidence 7776654 563 455556644
No 98
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=93.72 E-value=0.055 Score=59.45 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=60.2
Q ss_pred hhhHH-HHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC--------------CCCCcccccc
Q 000955 519 VDKLQ-AIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP--------------AKNDFNFEKR 583 (1210)
Q Consensus 519 ~ekl~-~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~--------------~kn~f~Fe~~ 583 (1210)
.+.|. .++..+ ..+|.+|+|++||+-.|...+-.. +..+.+--+|+=+ -.+...|...
T Consensus 203 ~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~----~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~ 275 (373)
T 3tm4_A 203 KASIANAMIELA---ELDGGSVLDPMCGSGTILIELALR----RYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQG 275 (373)
T ss_dssp CHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHT----TCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEEC
T ss_pred cHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 34443 344444 478999999999999998877553 2222333333311 1235677777
Q ss_pred ccccccCCCCCCCCeeeeeeCCCccchh-------hhHHHHHHhhhc-cCCcEEEEecC
Q 000955 584 DWMTVEPKELAPGSRLIMGLNPPFGVKA-------GLANKFINKALE-FNPKLLILIVP 634 (1210)
Q Consensus 584 dw~~v~~~elp~G~~LimgLnPPfg~~a-------~lAnkFi~kal~-F~PkliilI~P 634 (1210)
|..++.. +.++.=++-.|||||.+. .|-.+|++.+.. +.+++ ++|++
T Consensus 276 D~~~~~~---~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~~-~~i~~ 330 (373)
T 3tm4_A 276 DATQLSQ---YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRG-VFITT 330 (373)
T ss_dssp CGGGGGG---TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEEEEE-EEEES
T ss_pred ChhhCCc---ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCeE-EEEEC
Confidence 7776642 335554455599999764 233566666554 34444 44554
No 99
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=93.52 E-value=0.039 Score=45.87 Aligned_cols=40 Identities=30% Similarity=0.793 Sum_probs=30.6
Q ss_pred cccC---CCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchh
Q 000955 35 FCDN---GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCE 87 (1210)
Q Consensus 35 IC~d---GGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe 87 (1210)
+|+. ++.+|.|+ .|..+||.. | ++++..++ ...|+|+.|.
T Consensus 8 ~C~~~~~~~~MI~Cd-~C~~W~H~~--------C--vgi~~~~~--~~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFAGRPMIECN-ECHTWIHLS--------C--AKIRKSNV--PEVFVCQKCR 50 (52)
T ss_dssp TTCCBCTTCCEEECT-TTCCEEETT--------T--TTCCGGGC--CSSCCCHHHH
T ss_pred EeCCcCCCCCEEEcC-CCCcccccc--------c--cCCCcccC--CCcEECcCCC
Confidence 5655 45899999 599999999 5 56665432 4789999986
No 100
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=93.46 E-value=0.023 Score=57.77 Aligned_cols=57 Identities=21% Similarity=0.437 Sum_probs=39.5
Q ss_pred ccccccccCcccccccCCCCeecccc-ccCCccccccccCcccccccCCCCh-hhhhcccccccc
Q 000955 22 SNEEDELFDSVCSFCDNGGDLLCCEG-RCLRSFHATIDAGEESHCASLGLTK-DEVEAMLNFFCK 84 (1210)
Q Consensus 22 sdeddDlnDdVCaIC~dGGELLCCDG-sC~RSFH~~C~dGeeS~ClsLGLTe-~evqp~~sW~Cp 84 (1210)
-..++|..+.+|.+|.+||+|++|+- .|.++|-..|+. ..+|... ..+.....|.|-
T Consensus 71 f~~DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~------~nvG~~~~~~i~~~d~W~Cy 129 (159)
T 3a1b_A 71 YQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVD------LLVGPGAAQAAIKEDPWNCY 129 (159)
T ss_dssp TCBCTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHH------HHTCTTHHHHHHTSSSCCCT
T ss_pred cccCCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHH------HhcCHhHHHHHhccCCCEEE
Confidence 34566777899999999999999983 699999988653 1122211 123456789643
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=93.35 E-value=0.056 Score=48.06 Aligned_cols=39 Identities=21% Similarity=0.482 Sum_probs=29.0
Q ss_pred cccccCCCccCCCCCCceeeccc--cC-cccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRR--CP-KAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdR--CP-KAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+| .|++..+ +.||.|+. |+ .+||..|+... .++...|.|
T Consensus 18 ~C-~C~~~~~-----g~MI~CD~~~C~~~wfH~~Cvgl~---------~~p~g~w~C 59 (71)
T 1wen_A 18 YC-LCHQVSY-----GEMIGCDNPDCSIEWFHFACVGLT---------TKPRGKWFC 59 (71)
T ss_dssp CS-TTCCCSC-----SSEECCSCSSCSCCCEETTTTTCS---------SCCSSCCCC
T ss_pred EE-ECCCCCC-----CCEeEeeCCCCCCccEecccCCcC---------cCCCCCEEC
Confidence 46 6887643 35999999 88 69999999843 234577886
No 102
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=93.23 E-value=0.025 Score=59.70 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=84.1
Q ss_pred chhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccc-------c----CCCCCcccccccc
Q 000955 517 TKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDI-------L----PAKNDFNFEKRDW 585 (1210)
Q Consensus 517 Tk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl-------~----~~kn~f~Fe~~dw 585 (1210)
+...-+..|++.+. +.+|++|+|+.||.-.+.. +.+ +.....--.|+ . ....++.|...|.
T Consensus 5 ~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~-----~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~ 76 (252)
T 1qyr_A 5 NDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVG-----ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA 76 (252)
T ss_dssp CCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHH-----TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG
T ss_pred CCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhh-----CCCCeEEEEECCHHHHHHHHHHhccCCceEEEECch
Confidence 34455677888775 5789999999999999999 643 11100111111 0 1012466777777
Q ss_pred ccccCCCC---CCCCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecCCcc-ccccccCC--Cc---eee---e--
Q 000955 586 MTVEPKEL---APGSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPET-ERLDRKES--AY---ELV---W-- 651 (1210)
Q Consensus 586 ~~v~~~el---p~G~~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P~~t-~rld~k~~--~Y---~li---w-- 651 (1210)
+.+...++ +.....|+| ||||.+-..+-.++++.+.. .+-++|++-.|. +||=.+.. -| .++ |
T Consensus 77 ~~~~~~~~~~~~~~~~~vvs-NlPY~i~~~il~~ll~~~~~--~~~~~~m~QkEva~Rl~a~pG~k~yg~lsv~~q~~~~ 153 (252)
T 1qyr_A 77 MTFNFGELAEKMGQPLRVFG-NLPYNISTPLMFHLFSYTDA--IADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCN 153 (252)
T ss_dssp GGCCHHHHHHHHTSCEEEEE-ECCTTTHHHHHHHHHTTGGG--EEEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHHHEE
T ss_pred hhCCHHHhhcccCCceEEEE-CCCCCccHHHHHHHHhcCCC--cceEEEEEeHHHHHHhcCCCCCccccHHHHHHHHHhe
Confidence 77654443 223456777 99999766666666665433 345677777777 77643321 12 111 1
Q ss_pred -ccccccCCcceecCCCccc
Q 000955 652 -EDDQFLSGKSFYLPGSVDE 670 (1210)
Q Consensus 652 -ed~~~l~gksFYlPGsvd~ 670 (1210)
+.-.-+..++|+=|=.||.
T Consensus 154 ~~~~~~v~~~~F~P~PkV~S 173 (252)
T 1qyr_A 154 VIPVLEVPPSAFTPPPKVDS 173 (252)
T ss_dssp EEEEEEECGGGEESCCSSCE
T ss_pred EEEEEEEChHHccCCCCceE
Confidence 2223356788988888873
No 103
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=93.18 E-value=0.039 Score=64.72 Aligned_cols=37 Identities=30% Similarity=0.670 Sum_probs=30.3
Q ss_pred CeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhh
Q 000955 41 DLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEY 88 (1210)
Q Consensus 41 ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~ 88 (1210)
.+|+|| .|..+||.. | +|+++.+......|+|+.|..
T Consensus 57 ~mI~CD-~C~~WfH~~--------C--Vgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 57 QWIGCD-SCQTWYHFL--------C--SGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp SEEECT-TTCCEEEGG--------G--TTCCGGGTTTEEECCCTTTHH
T ss_pred CEEECC-CCCcCCCCc--------C--CCCChhHhcCCCeEECcCCcC
Confidence 689999 699999999 5 677776544568999999975
No 104
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=93.08 E-value=0.045 Score=53.15 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=64.6
Q ss_pred cccchhhhHHHHHHhhccc-ccCCCcEEeccCCcchHHHHHHHHHH--hhCCcccc-------ccccccCCCCCcccccc
Q 000955 514 RHFTKVDKLQAIVDKLHWY-VNDGDMIVDFCCGANDFSCLMKKKLD--ETGKNCLY-------KNYDILPAKNDFNFEKR 583 (1210)
Q Consensus 514 rhFTk~ekl~~i~~~Lh~y-v~~gd~ivdfccg~n~fs~lmk~kl~--~~gk~c~~-------kn~dl~~~kn~f~Fe~~ 583 (1210)
-..|...-.+.+++.|.-+ ..+|.+|+|++||.-.++..+-+... -+|.+.+- +|.....- +...|...
T Consensus 22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~ 100 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRG 100 (189)
T ss_dssp C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEES
T ss_pred CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEc
Confidence 3445555556666666543 25889999999999999985433210 01111111 12211111 35667777
Q ss_pred ccccccCCCCCCCCe-eeeeeCCCccchhhhHHHHHHhhhc---cCCcEEEEec
Q 000955 584 DWMTVEPKELAPGSR-LIMGLNPPFGVKAGLANKFINKALE---FNPKLLILIV 633 (1210)
Q Consensus 584 dw~~v~~~elp~G~~-LimgLnPPfg~~a~lAnkFi~kal~---F~PkliilI~ 633 (1210)
|+.+..+. ++.++. +|+ +||||........+++..+.. .+|.=+++|.
T Consensus 101 d~~~~~~~-~~~~~fD~i~-~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~ 152 (189)
T 3p9n_A 101 AVAAVVAA-GTTSPVDLVL-ADPPYNVDSADVDAILAALGTNGWTREGTVAVVE 152 (189)
T ss_dssp CHHHHHHH-CCSSCCSEEE-ECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred cHHHHHhh-ccCCCccEEE-ECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence 77665321 223333 454 499999754556677777664 6776555553
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.81 E-value=0.061 Score=50.19 Aligned_cols=39 Identities=21% Similarity=0.482 Sum_probs=28.9
Q ss_pred cccccCCCccCCCCCCceeeccc--cC-cccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRR--CP-KAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdR--CP-KAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+| .|++..+ +.||.|+. |+ .+||..|+... ..+...|.|
T Consensus 38 yC-iC~~~~~-----g~MI~CD~~dC~~~WfH~~CVgl~---------~~p~g~W~C 79 (91)
T 1weu_A 38 YC-LCHQVSY-----GEMIGCDNPDCSIEWFHFACVGLT---------TKPRGKWFC 79 (91)
T ss_dssp CS-TTCCBCC-----SCCCCCSCSSCSCCCCCSTTTTCS---------SCCCSSCCC
T ss_pred EE-ECCCCCC-----CCEeEecCCCCCCCCEecccCCcC---------cCCCCCEEC
Confidence 46 7877653 35999999 88 79999999853 234567887
No 106
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.20 E-value=0.075 Score=45.39 Aligned_cols=33 Identities=24% Similarity=0.608 Sum_probs=25.7
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
+|.+|++..+. ...+|+|+.|..+||..|+...
T Consensus 8 ~C~~C~~~~~~---~~~mI~Cd~C~~WfH~~Cvgl~ 40 (64)
T 1we9_A 8 QCGACGESYAA---DEFWICCDLCEMWFHGKCVKIT 40 (64)
T ss_dssp CCSSSCCCCCS---SSCEEECSSSCCEEETTTTTCC
T ss_pred CCCCCCCccCC---CCCEEEccCCCCCCCccccCcC
Confidence 35578877542 2469999999999999998664
No 107
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=92.13 E-value=0.11 Score=51.61 Aligned_cols=127 Identities=16% Similarity=0.159 Sum_probs=63.8
Q ss_pred chhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH--HhhCCcccc-------ccccccCCC-CCccccccccc
Q 000955 517 TKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL--DETGKNCLY-------KNYDILPAK-NDFNFEKRDWM 586 (1210)
Q Consensus 517 Tk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl--~~~gk~c~~-------kn~dl~~~k-n~f~Fe~~dw~ 586 (1210)
|...-.+.+++.|-.+ .+|.+|+|++||.-.|+..+-.+. .-+|.+.+- +|+....-. ++..|...|..
T Consensus 36 ~~~~~~~~l~~~l~~~-~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~ 114 (201)
T 2ift_A 36 TGDRVKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL 114 (201)
T ss_dssp --CHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred CHHHHHHHHHHHHHHh-cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHH
Confidence 3333344455555433 378999999999999998643321 011111111 122111110 34566666766
Q ss_pred cccCCCCCCCC--eeeeeeCCCccchhhhHHHHHHhhhc---cCCc-EEEEecCCccccccccCCCceee
Q 000955 587 TVEPKELAPGS--RLIMGLNPPFGVKAGLANKFINKALE---FNPK-LLILIVPPETERLDRKESAYELV 650 (1210)
Q Consensus 587 ~v~~~elp~G~--~LimgLnPPfg~~a~lAnkFi~kal~---F~Pk-liilI~P~~t~rld~k~~~Y~li 650 (1210)
+..+. ++.++ -+|+ +||||.. ....+++..+.. .+|. +||+..++.+ +......|.++
T Consensus 115 ~~~~~-~~~~~~fD~I~-~~~~~~~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~~~~ 178 (201)
T 2ift_A 115 DFLKQ-PQNQPHFDVVF-LDPPFHF--NLAEQAISLLCENNWLKPNALIYVETEKDK--PLITPENWTLL 178 (201)
T ss_dssp HHTTS-CCSSCCEEEEE-ECCCSSS--CHHHHHHHHHHHTTCEEEEEEEEEEEESSS--CCCCCTTEEEE
T ss_pred HHHHh-hccCCCCCEEE-ECCCCCC--ccHHHHHHHHHhcCccCCCcEEEEEECCCC--CccccchhHHH
Confidence 54332 33445 3555 5999872 334566666644 5665 4444455544 43333455543
No 108
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=92.13 E-value=0.029 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.647 Sum_probs=19.1
Q ss_pred CcccccCCCCCCCCCccccccccc
Q 000955 108 AEVFPCVSATCGHFYHPHCVSKLL 131 (1210)
Q Consensus 108 aELfkCsVasCGKFYHpkCLa~l~ 131 (1210)
..++.|. .|..+||..|+....
T Consensus 73 ~~m~~C~--~C~~~~H~~C~~~~~ 94 (117)
T 4bbq_A 73 KKLMECC--ICNEIVHPGCLQMDG 94 (117)
T ss_dssp GSCEEET--TTCCEECGGGCCSCC
T ss_pred cceEEee--ecCCeEECCCCCCCc
Confidence 4688999 999999999998754
No 109
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=91.93 E-value=0.07 Score=45.84 Aligned_cols=39 Identities=21% Similarity=0.482 Sum_probs=28.9
Q ss_pred cccccCCCccCCCCCCceeeccc--cC-cccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRR--CP-KAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdR--CP-KAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+| .|++..+ +.|+.|+. |+ .+||..|+... .++...|.|
T Consensus 12 ~C-~C~~~~~-----g~mi~CD~cdC~~~wfH~~Cvgl~---------~~p~g~w~C 53 (60)
T 2vnf_A 12 YC-LCHQVSY-----GEMIGCDNPDCSIEWFHFACVGLT---------TKPRGKWFC 53 (60)
T ss_dssp ET-TTTEECC-----SEEEECSCTTCSSCEEETGGGTCS---------SCCSSCCCC
T ss_pred EE-ECCCcCC-----CCEEEeCCCCCCCceEehhcCCCC---------cCCCCCEEC
Confidence 35 6877643 35999999 77 79999999843 335578887
No 110
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=91.68 E-value=0.19 Score=56.08 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=79.0
Q ss_pred ccCccc-chhhhHHHHHHhhccccc------CCCcEEeccCCcchHHHHHHHH------------------HHhhCCccc
Q 000955 511 SFGRHF-TKVDKLQAIVDKLHWYVN------DGDMIVDFCCGANDFSCLMKKK------------------LDETGKNCL 565 (1210)
Q Consensus 511 S~grhF-Tk~ekl~~i~~~Lh~yv~------~gd~ivdfccg~n~fs~lmk~k------------------l~~~gk~c~ 565 (1210)
+||+|| +...-+..||+.+. ++ ++|+||+.-.|-..+++.|-++ |.+.- .
T Consensus 29 ~lGQnFL~d~~i~~~Iv~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~---~ 103 (353)
T 1i4w_A 29 FYGFKYLWNPTVYNKIFDKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF---E 103 (353)
T ss_dssp GGGCCCBCCHHHHHHHHHHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT---T
T ss_pred CCCcCccCCHHHHHHHHHhcc--CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc---c
Confidence 899999 55667789999997 45 3699999999999999988754 33322 3
Q ss_pred cccccccCCCCCccccccccccc-cCCCCCC----------CCeeeeeeCCCccchhhhHHHHHHhhh-------ccCCc
Q 000955 566 YKNYDILPAKNDFNFEKRDWMTV-EPKELAP----------GSRLIMGLNPPFGVKAGLANKFINKAL-------EFNPK 627 (1210)
Q Consensus 566 ~kn~dl~~~kn~f~Fe~~dw~~v-~~~elp~----------G~~LimgLnPPfg~~a~lAnkFi~kal-------~F~Pk 627 (1210)
+.|+.||. .|-+.|. +|..+ ....||. ...+|+| |-||-+-..|--|++.... ....+
T Consensus 104 ~~~l~ii~-~D~l~~~--~~~~l~~~~~l~~~~~~~~~~~~~~~~vva-NLPYnIstpil~~ll~~~~~~~~l~~~~~~~ 179 (353)
T 1i4w_A 104 GSPLQILK-RDPYDWS--TYSNLIDEERIFVPEVQSSDHINDKFLTVA-NVTGEGSEGLIMQWLSCIGNKNWLYRFGKVK 179 (353)
T ss_dssp TSSCEEEC-SCTTCHH--HHHHHTTTTCSSCCCCCCTTSEEEEEEEEE-ECCSTTHHHHHHHHHHHHHHTCGGGGGSEEE
T ss_pred CCCEEEEE-CCccchh--hHHHhhcccccccccccccccCCCceEEEE-ECCCchHHHHHHHHHHhccccccccccCcce
Confidence 57888887 4555443 23222 1122321 1347888 9999876666666665432 01235
Q ss_pred EEEEecCCcccccccc
Q 000955 628 LLILIVPPETERLDRK 643 (1210)
Q Consensus 628 liilI~P~~t~rld~k 643 (1210)
+++.+=....+||=.+
T Consensus 180 m~lmvQkEvA~Rl~A~ 195 (353)
T 1i4w_A 180 MLLWMPSTTARKLLAR 195 (353)
T ss_dssp EEEEEEHHHHHHHHCC
T ss_pred EEEEeEHHHHHHhcCC
Confidence 5555544555666554
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=90.99 E-value=0.12 Score=48.78 Aligned_cols=36 Identities=28% Similarity=0.655 Sum_probs=28.0
Q ss_pred CCccccccCCCccCCCCCCceeecc-ccCcccccccCCCC
Q 000955 155 PLHKCCICKQGENKADSDLQFAVCR-RCPKAYHRKCLPRK 193 (1210)
Q Consensus 155 PlH~C~vCkkseDkn~~egqLIrCd-RCPKAYH~kCLPPp 193 (1210)
|...|..|++..+. ++.++.|+ .|..+||..|+...
T Consensus 2 ~~~~C~iC~~p~~~---~~~mi~Cdd~C~~WfH~~CVglt 38 (105)
T 2xb1_A 2 LVYPCGACRSEVND---DQDAILCEASCQKWFHRECTGMT 38 (105)
T ss_dssp CCCBCTTTCSBCCT---TSCEEECTTTTCCEEEGGGTTCC
T ss_pred CcCCCCCCCCccCC---CCCEEEecCCcccccccccCCcC
Confidence 34567889998643 23599998 99999999998764
No 112
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=90.99 E-value=0.051 Score=54.07 Aligned_cols=31 Identities=35% Similarity=0.854 Sum_probs=24.2
Q ss_pred ccccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 159 CCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 159 C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
| .|+...+. .+.++.|+.|+.+||..|+...
T Consensus 11 C-~C~~~~~~---~~~mi~Cd~C~~WfH~~Cv~~~ 41 (174)
T 2ri7_A 11 C-ICKTPEDE---SKFYIGCDRCQNWYHGRCVGIL 41 (174)
T ss_dssp T-TTTEECCT---TSCEEECTTTCCEEEHHHHTCC
T ss_pred e-eCCCCCCC---CCCEeECCCCCchhChhhcCCc
Confidence 5 77776542 3469999999999999998653
No 113
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=90.93 E-value=0.083 Score=60.03 Aligned_cols=35 Identities=31% Similarity=0.647 Sum_probs=29.9
Q ss_pred ccccccCcccccccCCCCeeccc-cccCCccccccc
Q 000955 24 EEDELFDSVCSFCDNGGDLLCCE-GRCLRSFHATID 58 (1210)
Q Consensus 24 eddDlnDdVCaIC~dGGELLCCD-GsC~RSFH~~C~ 58 (1210)
.++|..+.+|.+|.+||+|++|+ ..|.|+|-..|+
T Consensus 87 ~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci 122 (386)
T 2pv0_B 87 YDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECV 122 (386)
T ss_dssp BCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHH
T ss_pred cCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHH
Confidence 44567789999999999999998 469999998864
No 114
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=90.87 E-value=0.21 Score=48.39 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=50.2
Q ss_pred hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCCCCCccccccccccccCCCCCCCCe-e
Q 000955 521 KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPAKNDFNFEKRDWMTVEPKELAPGSR-L 599 (1210)
Q Consensus 521 kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~-L 599 (1210)
-.+.+++.|-.+..++.+|+|++||.-.|+..+.++..-+|.+.+-.-.++ .+...|...|+.+. ++.++. +
T Consensus 9 ~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---~~~~~~~~~d~~~~----~~~~~fD~ 81 (170)
T 3q87_B 9 DTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---HRGGNLVRADLLCS----INQESVDV 81 (170)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---CSSSCEEECSTTTT----BCGGGCSE
T ss_pred cHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---ccCCeEEECChhhh----cccCCCCE
Confidence 344566666555678899999999999999988664422233332222222 45677888887662 222332 4
Q ss_pred eeeeCCCccc
Q 000955 600 IMGLNPPFGV 609 (1210)
Q Consensus 600 imgLnPPfg~ 609 (1210)
|+. ||||-.
T Consensus 82 i~~-n~~~~~ 90 (170)
T 3q87_B 82 VVF-NPPYVP 90 (170)
T ss_dssp EEE-CCCCBT
T ss_pred EEE-CCCCcc
Confidence 444 999973
No 115
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=90.81 E-value=0.11 Score=44.66 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=28.7
Q ss_pred cccccCCCccCCCCCCceeeccc--cC-cccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRR--CP-KAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdR--CP-KAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+| .|++..+ +.|+.|+. |+ .+||..|+... ..+...|.|
T Consensus 11 yC-~C~~~~~-----g~mi~CD~~~C~~~wfH~~Cvgl~---------~~p~~~w~C 52 (59)
T 3c6w_A 11 YC-LCHQVSY-----GEMIGCDNPDCPIEWFHFACVDLT---------TKPKGKWFC 52 (59)
T ss_dssp ET-TTTEECC-----SEEEECSCTTCSSCEEETGGGTCS---------SCCSSCCCC
T ss_pred EE-ECCCCCC-----CCeeEeeCCCCCCCCEecccCCcc---------cCCCCCEEC
Confidence 35 7877643 35999999 88 69999999843 234567886
No 116
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=90.66 E-value=0.19 Score=50.02 Aligned_cols=123 Identities=18% Similarity=0.151 Sum_probs=61.6
Q ss_pred HHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH--HhhCCcccc-------ccccccCCCCCccccccccccccCCCC
Q 000955 523 QAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL--DETGKNCLY-------KNYDILPAKNDFNFEKRDWMTVEPKEL 593 (1210)
Q Consensus 523 ~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl--~~~gk~c~~-------kn~dl~~~kn~f~Fe~~dw~~v~~~el 593 (1210)
+.+++.|-.+ .+|.+|+|++||.-.++..+-.+. .-++.+.+- +|.....- ++..|...|+.+.-+.
T Consensus 43 ~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~-- 118 (202)
T 2fpo_A 43 ETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQ-- 118 (202)
T ss_dssp HHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSS--
T ss_pred HHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhh--
Confidence 3344444332 278999999999999988543221 111222111 12111111 3456777777664332
Q ss_pred CCCCeeeeeeCCCccchhhhHHHHHHhhhc---cCCcEE-EEecCCccccccccCCCceeeec
Q 000955 594 APGSRLIMGLNPPFGVKAGLANKFINKALE---FNPKLL-ILIVPPETERLDRKESAYELVWE 652 (1210)
Q Consensus 594 p~G~~LimgLnPPfg~~a~lAnkFi~kal~---F~Pkli-ilI~P~~t~rld~k~~~Y~liwe 652 (1210)
+.+..=++-+||||.. ....+++..+.. .+|.=+ ++...+.+. +......+.++.+
T Consensus 119 ~~~~fD~V~~~~p~~~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~-~~~~~~~~~~~~~ 178 (202)
T 2fpo_A 119 KGTPHNIVFVDPPFRR--GLLEETINLLEDNGWLADEALIYVESEVENG-LPTVPANWSLHRE 178 (202)
T ss_dssp CCCCEEEEEECCSSST--TTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC-SCCCCTTEEEEEE
T ss_pred cCCCCCEEEECCCCCC--CcHHHHHHHHHhcCccCCCcEEEEEECCCcc-ccccCCcceEEee
Confidence 2333323346999873 344556666554 567643 344444333 3333345555543
No 117
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=90.66 E-value=1.3 Score=43.86 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=57.6
Q ss_pred hcccccCCCcEEeccCC-cchHHHHHHHHH--HhhCCcccc-------ccccccCCCCCccccccccccccCCCCCCCCe
Q 000955 529 LHWYVNDGDMIVDFCCG-ANDFSCLMKKKL--DETGKNCLY-------KNYDILPAKNDFNFEKRDWMTVEPKELAPGSR 598 (1210)
Q Consensus 529 Lh~yv~~gd~ivdfccg-~n~fs~lmk~kl--~~~gk~c~~-------kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~ 598 (1210)
+.+++.+|++|+|++|| .-.|+..+.+.+ .-+|.+..- +|...... +..|...||... ..++.++.
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~--~~~~~~~f 124 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGII--KGVVEGTF 124 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSS--TTTCCSCE
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhh--hhcccCce
Confidence 56778999999999999 999998887754 001111111 12111111 456666665322 23455554
Q ss_pred eeeeeCCCccchh------------------hhHHHHHHhhhcc-CCc-EEEEecCC
Q 000955 599 LIMGLNPPFGVKA------------------GLANKFINKALEF-NPK-LLILIVPP 635 (1210)
Q Consensus 599 LimgLnPPfg~~a------------------~lAnkFi~kal~F-~Pk-liilI~P~ 635 (1210)
=++-.||||-... .+..+|+..+... +|. .|++++|.
T Consensus 125 D~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 125 DVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp EEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred eEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 3444799985322 2236777777653 554 33444554
No 118
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=90.64 E-value=0.11 Score=44.99 Aligned_cols=39 Identities=23% Similarity=0.583 Sum_probs=28.8
Q ss_pred cccccCCCccCCCCCCceeeccc--cC-cccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRR--CP-KAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdR--CP-KAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+| .|++..+ +.||.|+. |+ .+||..|+.... .+...|.|
T Consensus 13 yC-~C~~~~~-----g~MI~CD~c~C~~~WfH~~Cvgl~~---------~p~~~w~C 54 (62)
T 2g6q_A 13 YC-LCNQVSY-----GEMIGCDNEQCPIEWFHFSCVSLTY---------KPKGKWYC 54 (62)
T ss_dssp ET-TTTEECC-----SEEEECSCTTCSSCEEETGGGTCSS---------CCSSCCCC
T ss_pred EE-ECCCCCC-----CCeeeeeCCCCCcccEecccCCcCc---------CCCCCEEC
Confidence 35 7877643 35999999 77 999999998532 34567886
No 119
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=90.63 E-value=0.063 Score=61.85 Aligned_cols=47 Identities=26% Similarity=0.685 Sum_probs=35.6
Q ss_pred ccccccC----CCCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhc
Q 000955 32 VCSFCDN----GGDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYK 89 (1210)
Q Consensus 32 VCaIC~d----GGELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~g 89 (1210)
++.+|+. +|.+|+|+ .|..+||.. | +|++..+......|+|+.|...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD-~C~~WfH~~--------C--Vgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECD-MCQDWFHGS--------C--VGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EETTTTEECCTTSCEEECT-TTCCEEEHH--------H--HTCCHHHHTTEEECCCHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcC-CCCcccccc--------c--CCcCcccccCCCEEECCCCccc
Confidence 3447765 46899999 699999999 5 5677665444578999999753
No 120
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=90.52 E-value=0.17 Score=54.83 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=78.8
Q ss_pred ccCcccchh-hhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHh-hCCcccc-------ccccccCCCCCcccc
Q 000955 511 SFGRHFTKV-DKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDE-TGKNCLY-------KNYDILPAKNDFNFE 581 (1210)
Q Consensus 511 S~grhFTk~-ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~-~gk~c~~-------kn~dl~~~kn~f~Fe 581 (1210)
+||.||-.. .-+..|++.+. +.+|++|||+.||.-.+...|-++... ++.+..- +|+. ...++.|.
T Consensus 27 ~~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~---~~~~v~vi 101 (295)
T 3gru_A 27 KLGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE---LYNNIEII 101 (295)
T ss_dssp ---CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH---HCSSEEEE
T ss_pred ccCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc---cCCCeEEE
Confidence 799988644 45566777764 468999999999999999988664100 0111100 1111 11356677
Q ss_pred ccccccccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecCCcc-ccccccC--CCce---e------
Q 000955 582 KRDWMTVEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPET-ERLDRKE--SAYE---L------ 649 (1210)
Q Consensus 582 ~~dw~~v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P~~t-~rld~k~--~~Y~---l------ 649 (1210)
..|++.+...+.+ --.|++ |+||.+...+--++++. .....+|.+..|. +||=.+. ..|- +
T Consensus 102 ~gD~l~~~~~~~~--fD~Iv~-NlPy~is~pil~~lL~~----~~~~~~lm~Q~eva~Rl~a~pg~k~yg~Lsv~~q~~~ 174 (295)
T 3gru_A 102 WGDALKVDLNKLD--FNKVVA-NLPYQISSPITFKLIKR----GFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRA 174 (295)
T ss_dssp ESCTTTSCGGGSC--CSEEEE-ECCGGGHHHHHHHHHHH----CCSEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHTTE
T ss_pred ECchhhCCcccCC--ccEEEE-eCcccccHHHHHHHHhc----ccceEEEeeecccccEEEecCCCcchhHHHHHHHhhc
Confidence 7777766544322 125665 99999766666666653 3334444443332 3332110 1221 1
Q ss_pred eeccccccCCcceecCCCcc
Q 000955 650 VWEDDQFLSGKSFYLPGSVD 669 (1210)
Q Consensus 650 iwed~~~l~gksFYlPGsvd 669 (1210)
-.+--.-+...+|+=|--||
T Consensus 175 ~~~~~~~v~~~~F~P~PkVd 194 (295)
T 3gru_A 175 DVEIVAKVPPSAFYPKPKVY 194 (295)
T ss_dssp EEEEEEEECGGGEESCCSSC
T ss_pred cEEEEEEECcccCCCcCCCe
Confidence 11222335567888777766
No 121
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=90.02 E-value=0.57 Score=46.75 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=44.2
Q ss_pred hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC--CCCcccccccccc
Q 000955 518 KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA--KNDFNFEKRDWMT 587 (1210)
Q Consensus 518 k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~--kn~f~Fe~~dw~~ 587 (1210)
-.+||.+|.+++.. +++|++|||+|||.-.|+..+.++ .+..--.|+-+. .....|..-|..+
T Consensus 9 a~~KL~ei~~~~~~-~~~g~~VLDlG~G~G~~s~~la~~------~~~V~gvD~~~~~~~~~v~~~~~D~~~ 73 (191)
T 3dou_A 9 AAFKLEFLLDRYRV-VRKGDAVIEIGSSPGGWTQVLNSL------ARKIISIDLQEMEEIAGVRFIRCDIFK 73 (191)
T ss_dssp HHHHHHHHHHHHCC-SCTTCEEEEESCTTCHHHHHHTTT------CSEEEEEESSCCCCCTTCEEEECCTTS
T ss_pred HHHHHHHHHHHcCC-CCCCCEEEEEeecCCHHHHHHHHc------CCcEEEEeccccccCCCeEEEEccccC
Confidence 45699999999864 689999999999999999998664 233334454432 2345666666544
No 122
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=89.75 E-value=0.096 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.4
Q ss_pred CCCceeeccccCcccccccCCCCc
Q 000955 171 SDLQFAVCRRCPKAYHRKCLPRKI 194 (1210)
Q Consensus 171 ~egqLIrCdRCPKAYH~kCLPPpI 194 (1210)
.+.+|+.|+.|..+||..|+....
T Consensus 71 ~~~~m~~C~~C~~~~H~~C~~~~~ 94 (117)
T 4bbq_A 71 FEKKLMECCICNEIVHPGCLQMDG 94 (117)
T ss_dssp GGGSCEEETTTCCEECGGGCCSCC
T ss_pred cCcceEEeeecCCeEECCCCCCCc
Confidence 345699999999999999998754
No 123
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.73 E-value=0.048 Score=50.84 Aligned_cols=33 Identities=24% Similarity=0.759 Sum_probs=27.1
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCCCCCCccccccccc
Q 000955 91 HQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLL 131 (1210)
Q Consensus 91 HqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~ 131 (1210)
..|.||..... ..++.|. .|+|.||..|+.+.-
T Consensus 16 ~~C~VC~~~t~------~~l~pCR--vC~RvfH~~CL~r~g 48 (89)
T 1wil_A 16 EMCDVCEVWTA------ESLFPCR--VCTRVFHDGCLRRMG 48 (89)
T ss_dssp CCCTTTCCCCS------SCCSSCS--SSSSCCCHHHHHHHT
T ss_pred cccCccccccc------cceeccc--cccccccHhhccccc
Confidence 46888987653 4789998 999999999999853
No 124
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=89.35 E-value=0.18 Score=52.01 Aligned_cols=35 Identities=23% Similarity=0.572 Sum_probs=27.8
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCC
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPR 192 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPP 192 (1210)
+|.+|++..+.++.+..+|.|+.|..+||..|+..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi 38 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENL 38 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhcccc
Confidence 57788887665433456999999999999999865
No 125
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=89.19 E-value=0.68 Score=51.97 Aligned_cols=127 Identities=16% Similarity=0.238 Sum_probs=69.5
Q ss_pred hhHHHHHHhhccc--ccCCCcEEeccCCcchHHHHHHHHH-HhhCCcccc-------ccccccCCCCCcccccccccccc
Q 000955 520 DKLQAIVDKLHWY--VNDGDMIVDFCCGANDFSCLMKKKL-DETGKNCLY-------KNYDILPAKNDFNFEKRDWMTVE 589 (1210)
Q Consensus 520 ekl~~i~~~Lh~y--v~~gd~ivdfccg~n~fs~lmk~kl-~~~gk~c~~-------kn~dl~~~kn~f~Fe~~dw~~v~ 589 (1210)
+-.+.+++++.-+ +.++++|+|++||.-.|+..|.++- .-+|.+.+- +|.....- .+..|...|+.+.-
T Consensus 269 ~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 269 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCC
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEECCHHHHh
Confidence 3344444444333 3578999999999999999886530 001111110 12211111 14667777777643
Q ss_pred CC-CCCCCCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecC-Ccccccccc---CCCceeee
Q 000955 590 PK-ELAPGSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVP-PETERLDRK---ESAYELVW 651 (1210)
Q Consensus 590 ~~-elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P-~~t~rld~k---~~~Y~liw 651 (1210)
+. .++.++.=++-+|||+.- + ..++...+.++|+-||.|.- |.|-.-|.+ +.+|.+.+
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g---~-~~~~~~l~~~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAG---A-AGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIAR 410 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTC---C-HHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhhhhcCCCCEEEECCCCcc---H-HHHHHHHHhcCCCeEEEEECChHHHHhhHHHHHHCCcEEEE
Confidence 22 123333223446999862 2 35777778899999888754 333222222 24777765
No 126
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=88.88 E-value=1.2 Score=49.79 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=40.6
Q ss_pred ChhHHhHHHHHhhhcccccc---ccccccccccc-CcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHH
Q 000955 482 EPEVLSQIFKWKNKLKVYLA---PFLHGMRYTSF-GRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLM 553 (1210)
Q Consensus 482 ~p~vL~Ql~~wk~kL~vyla---P~l~G~rytS~-grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lm 553 (1210)
+|++.-.+..-++.+.++|- .-||=.-|-.+ |..-.+......++....| .++++|||++||+-.|..-.
T Consensus 146 ~Pd~~i~v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~~~--~~~~~vlDp~CGSGt~~iea 219 (393)
T 3k0b_A 146 GALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSW--HPDRPFYDPVCGSGTIPIEA 219 (393)
T ss_dssp SSBCCEEEEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHHSCC--CTTSCEEETTCTTSHHHHHH
T ss_pred CCCEEEEEEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHHhCC--CCCCeEEEcCCCCCHHHHHH
Confidence 46665555555566665554 12332234222 2222233444556777777 57899999999999996543
No 127
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.71 E-value=0.33 Score=42.64 Aligned_cols=31 Identities=19% Similarity=0.598 Sum_probs=24.1
Q ss_pred ccccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 159 CCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 159 C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
| .|+...+. ...||+|+.|..+||..|+...
T Consensus 19 C-~C~~~~~~---g~~mI~Cd~C~~W~H~~Cvg~~ 49 (72)
T 1wee_A 19 C-KCGTKDDD---GERMLACDGCGVWHHTRCIGIN 49 (72)
T ss_dssp C-TTCCCSCC---SSCEEECSSSCEEEETTTTTCC
T ss_pred e-eCCCccCC---CCcEEECCCCCCccCCeeeccC
Confidence 5 58877532 2259999999999999999764
No 128
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.63 E-value=0.12 Score=45.60 Aligned_cols=31 Identities=32% Similarity=0.798 Sum_probs=24.7
Q ss_pred cccccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 158 KCCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
+| .|++..+. ..||+|+.|..+||..|+...
T Consensus 18 ~C-~C~~~~~~----~~MI~Cd~C~~WfH~~Cvgl~ 48 (76)
T 1wem_A 18 YC-ICRQPHNN----RFMICCDRCEEWFHGDCVGIS 48 (76)
T ss_dssp CS-TTCCCCCS----SCEEECSSSCCEEEHHHHSCC
T ss_pred EE-ECCCccCC----CCEEEeCCCCCcEeCeEEccc
Confidence 35 68887652 369999999999999998664
No 129
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.42 E-value=0.14 Score=44.80 Aligned_cols=33 Identities=30% Similarity=0.685 Sum_probs=26.5
Q ss_pred cccccCCCccCCCCCCceeecc-ccCcccccccCCCC
Q 000955 158 KCCICKQGENKADSDLQFAVCR-RCPKAYHRKCLPRK 193 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCd-RCPKAYH~kCLPPp 193 (1210)
.|..|++..+.. ..+|.|+ .|..+||..|+.-.
T Consensus 10 ~C~~C~~p~~~~---~~mI~CD~~C~~WfH~~Cvglt 43 (65)
T 2vpb_A 10 PCGICTNEVNDD---QDAILCEASCQKWFHRICTGMT 43 (65)
T ss_dssp BCTTTCSBCCTT---SCEEEBTTTTCCEEEHHHHTCC
T ss_pred cCccCCCccCCC---CCeEecccCccccCchhccCCC
Confidence 477899986532 3699999 99999999998553
No 130
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=88.28 E-value=1.3 Score=49.47 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=40.0
Q ss_pred hhHHhHHHHHhhhccccccc---cccccccccc-CcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 483 PEVLSQIFKWKNKLKVYLAP---FLHGMRYTSF-GRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 483 p~vL~Ql~~wk~kL~vylaP---~l~G~rytS~-grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
|++--.+...++.+.++|-- -||-.-|-.+ |..-.+......++..+.| .+|.+|+|++||+-.|..-.-.
T Consensus 141 p~~~i~~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~--~~~~~vlDp~CGSGt~lieaa~ 215 (385)
T 3ldu_A 141 EKYPIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLTPW--KAGRVLVDPMCGSGTILIEAAM 215 (385)
T ss_dssp CBCCEEEEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHTSCC--CTTSCEEETTCTTCHHHHHHHH
T ss_pred CCEEEEEEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHhhCC--CCCCeEEEcCCCCCHHHHHHHH
Confidence 45444444455666666542 2332223111 1222233344456677777 4789999999999999765544
No 131
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=88.22 E-value=0.27 Score=40.86 Aligned_cols=33 Identities=15% Similarity=0.514 Sum_probs=26.0
Q ss_pred cccccCCCccCCCCCCceeecc-ccCcccccccCCCC
Q 000955 158 KCCICKQGENKADSDLQFAVCR-RCPKAYHRKCLPRK 193 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCd-RCPKAYH~kCLPPp 193 (1210)
-|-+|++..+. +..+|.|+ .|..+||..|+...
T Consensus 4 ~cc~C~~p~~~---~~~mI~Cd~~C~~WfH~~Cvgl~ 37 (52)
T 2kgg_A 4 AAQNCQRPCKD---KVDWVQCDGGCDEWFHQVCVGVS 37 (52)
T ss_dssp SCTTCCCCCCT---TCCEEECTTTTCCEEETTTTTCC
T ss_pred cCCCCcCccCC---CCcEEEeCCCCCccCcccccCCC
Confidence 46778887643 34699999 99999999998664
No 132
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=88.14 E-value=0.86 Score=48.36 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=44.8
Q ss_pred cCCCcEEeccCCcchHHHHHHHH--HHhhCCcccc-------ccccccCCCCCccccccccccccCCCCCCCCeeeeeeC
Q 000955 534 NDGDMIVDFCCGANDFSCLMKKK--LDETGKNCLY-------KNYDILPAKNDFNFEKRDWMTVEPKELAPGSRLIMGLN 604 (1210)
Q Consensus 534 ~~gd~ivdfccg~n~fs~lmk~k--l~~~gk~c~~-------kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~LimgLn 604 (1210)
.++.+|+|+|||+--++..+.+. ..-+|.+.+- +|.....-.|...|...||.+.-++.+..- -+|+ .|
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~-D~Iv-sn 199 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASI-EMIL-SN 199 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTC-CEEE-EC
T ss_pred cCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCC-CEEE-Ec
Confidence 37789999999999999888664 0111222211 232222334568899999987432211111 2555 49
Q ss_pred CCccchh
Q 000955 605 PPFGVKA 611 (1210)
Q Consensus 605 PPfg~~a 611 (1210)
|||.-..
T Consensus 200 PPyi~~~ 206 (284)
T 1nv8_A 200 PPYVKSS 206 (284)
T ss_dssp CCCBCGG
T ss_pred CCCCCcc
Confidence 9997543
No 133
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=88.12 E-value=0.3 Score=45.52 Aligned_cols=39 Identities=21% Similarity=0.482 Sum_probs=27.5
Q ss_pred cccccCCCccCCCCCCceeecccc--C-cccccccCCCCcccccccccccccccccc
Q 000955 158 KCCICKQGENKADSDLQFAVCRRC--P-KAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 158 ~C~vCkkseDkn~~egqLIrCdRC--P-KAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
+| .|++..+ +.||.|+.| + .+||..|+... ..+...|.|
T Consensus 28 yC-iC~~~~~-----g~MI~CD~c~C~~eWfH~~CVgl~---------~~p~~~W~C 69 (90)
T 2jmi_A 28 YC-FCRNVSY-----GPMVACDNPACPFEWFHYGCVGLK---------QAPKGKWYC 69 (90)
T ss_dssp CS-TTTCCCS-----SSEECCCSSSCSCSCEETTTSSCS---------SCTTSCCCS
T ss_pred EE-EeCCCCC-----CCEEEecCCCCccccCcCccCCCC---------cCCCCCccC
Confidence 36 6877543 259999995 4 89999999743 234467886
No 134
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=88.03 E-value=0.24 Score=43.65 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=24.4
Q ss_pred ccccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 159 CCICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 159 C~vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
| .|++..+ +..||+|+.|..+||..|+...
T Consensus 22 C-iC~~~~~----~~~MIqCd~C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 22 C-FCMKPFA----GRPMIECNECHTWIHLSCAKIR 51 (68)
T ss_dssp S-TTCCCCT----TCCEEECTTTCCEEETTTTTCC
T ss_pred e-ECCCcCC----CCCEEECCCCCccccccccCcC
Confidence 5 7877654 2369999999999999999764
No 135
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=87.69 E-value=0.36 Score=54.07 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=41.3
Q ss_pred ChhHHhHHHHHhhhcccccc---cccccccccccCcccchhhhH-HHHHHhhcccccCCCcEEeccCCcchHHHH
Q 000955 482 EPEVLSQIFKWKNKLKVYLA---PFLHGMRYTSFGRHFTKVDKL-QAIVDKLHWYVNDGDMIVDFCCGANDFSCL 552 (1210)
Q Consensus 482 ~p~vL~Ql~~wk~kL~vyla---P~l~G~rytS~grhFTk~ekl-~~i~~~Lh~yv~~gd~ivdfccg~n~fs~l 552 (1210)
+|++.-.+..-++++.++|- .-||=.-|-.+.---...|.| ..++....| ++|++|||++||+--|..-
T Consensus 139 ~pd~~i~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~~~--~~~~~llDp~CGSGt~lIE 211 (384)
T 3ldg_A 139 GPEFKIEISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLSNW--FPDKPFVDPTCGSGTFCIE 211 (384)
T ss_dssp SCBCEEEEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHTTC--CTTSCEEETTCTTSHHHHH
T ss_pred CCCEEEEEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHhCC--CCCCeEEEeCCcCCHHHHH
Confidence 46666666666677776664 223332342222112223444 456777787 4789999999999998643
No 136
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=87.50 E-value=0.44 Score=49.46 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=57.2
Q ss_pred ccCCCcEEeccCCcchHHHHHHHHHHh---hCCccc-------cccccc---cCCCCCccccccccccccC----CCCCC
Q 000955 533 VNDGDMIVDFCCGANDFSCLMKKKLDE---TGKNCL-------YKNYDI---LPAKNDFNFEKRDWMTVEP----KELAP 595 (1210)
Q Consensus 533 v~~gd~ivdfccg~n~fs~lmk~kl~~---~gk~c~-------~kn~dl---~~~kn~f~Fe~~dw~~v~~----~elp~ 595 (1210)
+.+++.|||++||.-.++..|.++... +|.+.. -+|... ..-.+...|...|+.+..+ ..++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 457899999999999999988776421 111111 123332 2222345667777766532 23556
Q ss_pred CCeeeeeeCCCccchh---------hh--------HHHHHHhhhc-cCCc-EEEEecCCc
Q 000955 596 GSRLIMGLNPPFGVKA---------GL--------ANKFINKALE-FNPK-LLILIVPPE 636 (1210)
Q Consensus 596 G~~LimgLnPPfg~~a---------~l--------AnkFi~kal~-F~Pk-liilI~P~~ 636 (1210)
++.=++-.||||.... .+ -..|+..|.. .+|. .|++|.|++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 173 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ 173 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence 6654444599998652 11 3466665543 2443 455677765
No 137
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=87.26 E-value=0.46 Score=48.75 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=45.2
Q ss_pred cc-CCCcEEeccCCcchHHHHHHHHHH--hhCCccc-------cccccccCCCCCccccccccccccCCCCCCCCeeeee
Q 000955 533 VN-DGDMIVDFCCGANDFSCLMKKKLD--ETGKNCL-------YKNYDILPAKNDFNFEKRDWMTVEPKELAPGSRLIMG 602 (1210)
Q Consensus 533 v~-~gd~ivdfccg~n~fs~lmk~kl~--~~gk~c~-------~kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~Limg 602 (1210)
+. +|++|+|++||.-.|+.++.++.. -+|.+.. -+|+....-.+...|...|+.+..+ .++.++.=++-
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~-~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD-LIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG-TSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh-hhccCCccEEE
Confidence 44 899999999999999998866421 0111111 1222222333457777777776643 35556554445
Q ss_pred eCCCccch
Q 000955 603 LNPPFGVK 610 (1210)
Q Consensus 603 LnPPfg~~ 610 (1210)
.||||-..
T Consensus 125 ~npPy~~~ 132 (259)
T 3lpm_A 125 CNPPYFAT 132 (259)
T ss_dssp ECCCC---
T ss_pred ECCCCCCC
Confidence 69999543
No 138
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=86.88 E-value=0.82 Score=46.45 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHhhcccc--cCCCcEEeccCCcchHHHHHHHH
Q 000955 522 LQAIVDKLHWYV--NDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 522 l~~i~~~Lh~yv--~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
..++++++.-.+ ..+.+|+|++||.-.|...+.+.
T Consensus 36 a~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~ 72 (250)
T 1o9g_A 36 ATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLL 72 (250)
T ss_dssp HHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHH
Confidence 335565544333 36788999999999999988765
No 139
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.80 E-value=0.2 Score=44.77 Aligned_cols=30 Identities=23% Similarity=0.571 Sum_probs=24.1
Q ss_pred ccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 161 ICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 161 vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
.|++..+. ...||+|+.|..+||..|+...
T Consensus 16 ~C~~~~d~---~~~MIqCd~C~~WfH~~Cvgl~ 45 (79)
T 1wep_A 16 LCRQPYNV---NHFMIECGLCQDWFHGSCVGIE 45 (79)
T ss_dssp TTSCSCCS---SSCEEEBTTTCCEEEHHHHTCC
T ss_pred EcCCccCC---CCceEEcCCCCCcEEeeecCcc
Confidence 78877642 3469999999999999998653
No 140
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=84.93 E-value=0.4 Score=45.53 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=64.5
Q ss_pred chhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCcccccccccc--------------CCCCCccccc
Q 000955 517 TKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDIL--------------PAKNDFNFEK 582 (1210)
Q Consensus 517 Tk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~--------------~~kn~f~Fe~ 582 (1210)
|...-++.+++.|..+ .+|++|+|++||.-.|+..+.++ + .+..--.|+- .-.++..|..
T Consensus 27 ~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~----~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 100 (187)
T 2fhp_A 27 TTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSR----G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 100 (187)
T ss_dssp CCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred CHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEE
Confidence 4444455556655432 57899999999999998865432 1 1122222221 1123467777
Q ss_pred cccccccCC-CCCCCCeeeeeeCCCccchhhhHHHHHHhhhc---cCCc-EEEEecCCccccccccCCCceeeecc
Q 000955 583 RDWMTVEPK-ELAPGSRLIMGLNPPFGVKAGLANKFINKALE---FNPK-LLILIVPPETERLDRKESAYELVWED 653 (1210)
Q Consensus 583 ~dw~~v~~~-elp~G~~LimgLnPPfg~~a~lAnkFi~kal~---F~Pk-liilI~P~~t~rld~k~~~Y~liwed 653 (1210)
.|+.+..+. ..+.++.=++-+||||.. ....+++..... .+|. +|++..|.... +......+.++++.
T Consensus 101 ~d~~~~~~~~~~~~~~fD~i~~~~~~~~--~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~-~~~~~~~~~~~~~~ 173 (187)
T 2fhp_A 101 MDANRALEQFYEEKLQFDLVLLDPPYAK--QEIVSQLEKMLERQLLTNEAVIVCETDKTVK-LPETIGTLKKTRET 173 (187)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCGGG--CCHHHHHHHHHHTTCEEEEEEEEEEEETTCC-CCSEETTEEEEEEE
T ss_pred CcHHHHHHHHHhcCCCCCEEEECCCCCc--hhHHHHHHHHHHhcccCCCCEEEEEeCCccc-ccccccchhhhhhh
Confidence 787764321 001233333346999873 223344444322 2454 33444444433 43333456665543
No 141
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=84.79 E-value=2.7 Score=41.04 Aligned_cols=44 Identities=7% Similarity=0.199 Sum_probs=37.3
Q ss_pred ccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
.+|++++....+..+++.|. +.+|++|+|+.||.-.++..|-+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~ 98 (210)
T 3lbf_A 55 GQGQTISQPYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHL 98 (210)
T ss_dssp TTSCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEeCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh
Confidence 37888888888888888885 479999999999999999888664
No 142
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=83.69 E-value=0.79 Score=47.46 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=41.9
Q ss_pred cCCCcEEeccCCcchHHHHHHHHHHh---hCCcccc-------ccccccCCCCCccccccccccccCCCCCCCCeeeeee
Q 000955 534 NDGDMIVDFCCGANDFSCLMKKKLDE---TGKNCLY-------KNYDILPAKNDFNFEKRDWMTVEPKELAPGSRLIMGL 603 (1210)
Q Consensus 534 ~~gd~ivdfccg~n~fs~lmk~kl~~---~gk~c~~-------kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~LimgL 603 (1210)
.++.+|+|++||+-.++..+.+.+.. ++.+.+- +|...... .+..|...||.+. ++.+..=++-.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~v~~~~~d~~~~----~~~~~fD~Iv~ 182 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSA----LAGQQFAMIVS 182 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGG----GTTCCEEEEEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEEcchhhh----cccCCccEEEE
Confidence 67889999999999999888654311 1111111 12111111 1477888888764 23344333445
Q ss_pred CCCccch
Q 000955 604 NPPFGVK 610 (1210)
Q Consensus 604 nPPfg~~ 610 (1210)
||||.-.
T Consensus 183 npPy~~~ 189 (276)
T 2b3t_A 183 NPPYIDE 189 (276)
T ss_dssp CCCCBCT
T ss_pred CCCCCCc
Confidence 9999644
No 143
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=83.54 E-value=1 Score=54.02 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=43.1
Q ss_pred ChhHHhHHHHHhhhcccccc---cccccccccc-cCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHH
Q 000955 482 EPEVLSQIFKWKNKLKVYLA---PFLHGMRYTS-FGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLM 553 (1210)
Q Consensus 482 ~p~vL~Ql~~wk~kL~vyla---P~l~G~rytS-~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lm 553 (1210)
+|++.-.+..-++++-++|- .-||=.-|-. .|..=.+......++....| .+|++|||++||+-.|.--.
T Consensus 135 ~pd~~i~v~l~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~--~~~~~llDP~CGSGt~lIeA 208 (703)
T 3v97_A 135 APDIRVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGW--QPGTPLLDPMCGSGTLLIEA 208 (703)
T ss_dssp SCSEEEEEEEETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHTTC--CTTSCEEETTCTTSHHHHHH
T ss_pred CCCEEEEEEEECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHhhCC--CCCCeEEecCCCCcHHHHHH
Confidence 46665555555666666664 2244333522 23333344445667777777 47899999999999996543
No 144
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=83.19 E-value=6.5 Score=36.02 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=50.1
Q ss_pred hhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC--CCCCcccccccccccc-----CCC
Q 000955 520 DKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP--AKNDFNFEKRDWMTVE-----PKE 592 (1210)
Q Consensus 520 ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~--~kn~f~Fe~~dw~~v~-----~~e 592 (1210)
.+|.++++++. ++.+++.|+|++||.-.|+..+.+++ |..+.+--.|+-+ ......|...|+.+.. +..
T Consensus 8 ~~l~~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T 1ej0_A 8 FKLDEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQI---GGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHH---CTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHh---CCCCeEEEEECccccccCcEEEEEcccccchhhhhhhcc
Confidence 46777877765 57899999999999999999887754 2223333333221 1134555555655432 011
Q ss_pred CCCCCe-eeeeeCCCcc
Q 000955 593 LAPGSR-LIMGLNPPFG 608 (1210)
Q Consensus 593 lp~G~~-LimgLnPPfg 608 (1210)
++.++. +|+ .|+||.
T Consensus 84 ~~~~~~D~i~-~~~~~~ 99 (180)
T 1ej0_A 84 VGDSKVQVVM-SDMAPN 99 (180)
T ss_dssp HTTCCEEEEE-ECCCCC
T ss_pred CCCCceeEEE-ECCCcc
Confidence 344443 444 488765
No 145
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=83.13 E-value=0.17 Score=57.62 Aligned_cols=92 Identities=20% Similarity=0.411 Sum_probs=55.0
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCccccccCCCccCC
Q 000955 90 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHKCCICKQGENKA 169 (1210)
Q Consensus 90 QHqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH~C~vCkkseDkn 169 (1210)
...|..||+......-..-++..|. .|..+|+..-.... .+| + ..+|..|..++
T Consensus 50 e~~C~~CG~~~~~~~HPl~~v~lC~--~Ck~~y~~~~f~~D----------------~DG--~---~~yCr~C~~Gg--- 103 (386)
T 2pv0_B 50 EDICICCGSLQVHTQHPLFEGGICA--PCKDKFLDALFLYD----------------DDG--Y---QSYCSICCSGE--- 103 (386)
T ss_dssp GGSBTTTCCSCCCSBCSSBSSBCCH--HHHHHHHTTTTCBC----------------SSS--S---BCSCTTTCCCS---
T ss_pred cceeCCCCCcCccccCCCcCcchhh--HHHHHHhccCcccC----------------CCC--C---cccceEcCCCC---
Confidence 3568888776432111122456776 66666665433221 122 2 23689998776
Q ss_pred CCCCceeecc--ccCcccccccCCCCccccccccccccccccccc
Q 000955 170 DSDLQFAVCR--RCPKAYHRKCLPRKIAFEDKLEEGIITRAWEGL 212 (1210)
Q Consensus 170 ~~egqLIrCd--RCPKAYH~kCLPPpIafed~~eE~Ip~RAW~CL 212 (1210)
.++.|+ .|+++|+..|+..-+......+ -.....|.|.
T Consensus 104 ----~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~-i~~~d~W~Cf 143 (386)
T 2pv0_B 104 ----TLLICGNPDCTRCYCFECVDSLVGPGTSGK-VHAMSNWVCY 143 (386)
T ss_dssp ----SCEECCSTTCCCEECHHHHHHHTCTTHHHH-HHHCSSCCCT
T ss_pred ----eEEEeCCCCCCcchHHHHHHHhcChhHHHH-hhccCCceEE
Confidence 399999 9999999999977653222111 1234679883
No 146
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=82.54 E-value=0.91 Score=43.90 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=43.3
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCC-ccccccccccCCC--CCcccccccccc
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGK-NCLYKNYDILPAK--NDFNFEKRDWMT 587 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk-~c~~kn~dl~~~k--n~f~Fe~~dw~~ 587 (1210)
..||.++.+++. ++++|++|+|++||.-.|+..+.+++ +. .+..--.|+-+-. ....|...|+.+
T Consensus 7 ~~kl~~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~---~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~ 74 (201)
T 2plw_A 7 AYKLIELDNKYL-FLKKNKIILDIGCYPGSWCQVILERT---KNYKNKIIGIDKKIMDPIPNVYFIQGEIGK 74 (201)
T ss_dssp HHHHHHHHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHT---TTSCEEEEEEESSCCCCCTTCEEEECCTTT
T ss_pred HHHHHHHHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHc---CCCCceEEEEeCCccCCCCCceEEEccccc
Confidence 457899999876 57899999999999999999986643 21 3444444544311 234455555543
No 147
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=82.53 E-value=0.35 Score=44.45 Aligned_cols=34 Identities=24% Similarity=0.630 Sum_probs=25.6
Q ss_pred cccCcccccccC--CCCeecc-ccccCCccccccccC
Q 000955 27 ELFDSVCSFCDN--GGDLLCC-EGRCLRSFHATIDAG 60 (1210)
Q Consensus 27 DlnDdVCaIC~d--GGELLCC-DGsC~RSFH~~C~dG 60 (1210)
+-+...|.+|.+ .|..|.| .+.|.++||+.|+..
T Consensus 14 ~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 14 ARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHH
T ss_pred HHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHH
Confidence 346788999985 2665555 578999999998753
No 148
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=82.07 E-value=0.61 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=17.9
Q ss_pred cccCCCC----eeccccccCCcccccccc
Q 000955 35 FCDNGGD----LLCCEGRCLRSFHATIDA 59 (1210)
Q Consensus 35 IC~dGGE----LLCCDGsC~RSFH~~C~d 59 (1210)
+|+..|+ +|.|. .|.++||..|..
T Consensus 9 YCG~~~~~~~~mLqC~-~C~qWFH~~Cl~ 36 (177)
T 3rsn_A 9 DEENGRQLGEVELQCG-ICTKWFTADTFG 36 (177)
T ss_dssp --CTTCCTTSCEEECT-TTCCEEEGGGGT
T ss_pred EcCCCCCCCceeEeec-cccceecHHHhc
Confidence 5777664 78887 599999999765
No 149
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.31 E-value=0.44 Score=42.59 Aligned_cols=30 Identities=23% Similarity=0.562 Sum_probs=24.0
Q ss_pred ccccCCCccCCCCCCceeecc--ccCcccccccCCCC
Q 000955 159 CCICKQGENKADSDLQFAVCR--RCPKAYHRKCLPRK 193 (1210)
Q Consensus 159 C~vCkkseDkn~~egqLIrCd--RCPKAYH~kCLPPp 193 (1210)
| +|+...+ .+.||.|+ .|..+||..|+...
T Consensus 19 C-iC~~~~~----~g~MI~CD~~~C~~W~H~~CVgi~ 50 (78)
T 1wew_A 19 C-VCGNSLE----TDSMIQCEDPRCHVWQHVGCVILP 50 (78)
T ss_dssp C-SSCCCCC----CSCEEECSSTTTCCEEEHHHHSCC
T ss_pred e-ECCCcCC----CCCEEEECCccCCccccCEEEccc
Confidence 5 6888733 24699999 99999999998664
No 150
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=81.28 E-value=0.54 Score=45.18 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=37.7
Q ss_pred cCCCcEEeccCCcchHHHHHHHHHHh---hCCccccccccccCCCC------CccccccccccccCCC-CCCCCe-eeee
Q 000955 534 NDGDMIVDFCCGANDFSCLMKKKLDE---TGKNCLYKNYDILPAKN------DFNFEKRDWMTVEPKE-LAPGSR-LIMG 602 (1210)
Q Consensus 534 ~~gd~ivdfccg~n~fs~lmk~kl~~---~gk~c~~kn~dl~~~kn------~f~Fe~~dw~~v~~~e-lp~G~~-Limg 602 (1210)
.++.+|+|++||.-.++..+.+.+.. +|.+..-...++.. +| ...|...|+...-+.. ...++. +|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~- 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVAR-RNAERFGAVVDWAAADGIEWLIERAERGRPWHAIV- 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEE-
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH-HHHHHhCCceEEEEcchHhhhhhhhhccCcccEEE-
Confidence 68999999999999999988775321 22222211111111 11 4567777776522210 001332 555
Q ss_pred eCCCccchh
Q 000955 603 LNPPFGVKA 611 (1210)
Q Consensus 603 LnPPfg~~a 611 (1210)
.||||....
T Consensus 107 ~npp~~~~~ 115 (215)
T 4dzr_A 107 SNPPYIPTG 115 (215)
T ss_dssp ECCCCCC--
T ss_pred ECCCCCCCc
Confidence 499996544
No 151
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=80.67 E-value=1.1 Score=50.61 Aligned_cols=100 Identities=21% Similarity=0.339 Sum_probs=56.6
Q ss_pred HHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHh-hCCccc-------cccccccCCCCCccccccccccccCCCCC
Q 000955 523 QAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDE-TGKNCL-------YKNYDILPAKNDFNFEKRDWMTVEPKELA 594 (1210)
Q Consensus 523 ~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~-~gk~c~-------~kn~dl~~~kn~f~Fe~~dw~~v~~~elp 594 (1210)
+.+++.+.- +.++++|+|++||.-.|+..|.++..+ +|.+.. -+|...-. -+ ..|...|+..+-++
T Consensus 279 e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ng-l~-v~~~~~d~~~~~~~--- 352 (425)
T 2jjq_A 279 VNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINN-VD-AEFEVASDREVSVK--- 352 (425)
T ss_dssp HHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CC-EEEEECCTTTCCCT---
T ss_pred HHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcC-Cc-EEEEECChHHcCcc---
Confidence 333333333 788999999999999999888653110 111111 01211100 01 45666666655332
Q ss_pred CCCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEec
Q 000955 595 PGSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIV 633 (1210)
Q Consensus 595 ~G~~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~ 633 (1210)
.=+ +|+ +|||. +.+..++++.+...+|+=||+|.
T Consensus 353 ~fD-~Vv-~dPPr---~g~~~~~~~~l~~l~p~givyvs 386 (425)
T 2jjq_A 353 GFD-TVI-VDPPR---AGLHPRLVKRLNREKPGVIVYVS 386 (425)
T ss_dssp TCS-EEE-ECCCT---TCSCHHHHHHHHHHCCSEEEEEE
T ss_pred CCC-EEE-EcCCc---cchHHHHHHHHHhcCCCcEEEEE
Confidence 113 333 59996 23455677777778998777775
No 152
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=80.37 E-value=1.2 Score=51.43 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=47.0
Q ss_pred hcChhHHhHHHHHhhhcccccc-cccccccccccCcc---cchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 480 VCEPEVLSQIFKWKNKLKVYLA-PFLHGMRYTSFGRH---FTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 480 vc~p~vL~Ql~~wk~kL~vyla-P~l~G~rytS~grh---FTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
.|.++.+.+|+.+- +.|+.-- -.|-+ |-+|-.. -|..+.+.+|+++|. +.+|++|||++||.-.+...+-.
T Consensus 119 ~~~~~~~~~Il~~~-Y~r~V~~~~~L~~--Ye~Fs~~vYGEt~~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~ 193 (438)
T 3uwp_A 119 RPSTGLLRHILQQV-YNHSVTDPEKLNN--YEPFSPEVYGETSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAA 193 (438)
T ss_dssp CCCHHHHHHHHHHH-HHHHCSCGGGSCC--CSSSCGGGGGGTHHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HhhcCCCHHHhcC--cccCCCcccCCCCHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHH
Confidence 47778888888772 2222211 12222 4432211 355777888888884 78999999999999999988755
No 153
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=80.19 E-value=0.97 Score=44.49 Aligned_cols=148 Identities=12% Similarity=0.207 Sum_probs=75.8
Q ss_pred hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC------C------------CCccccc
Q 000955 521 KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA------K------------NDFNFEK 582 (1210)
Q Consensus 521 kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~------k------------n~f~Fe~ 582 (1210)
.++.+++.|.. .++.+|+|+.||.-.|+..+.++. ..+.+--.|+-+. + .+..|..
T Consensus 17 ~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 90 (217)
T 3jwh_A 17 RMNGVVAALKQ--SNARRVIDLGCGQGNLLKILLKDS----FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90 (217)
T ss_dssp HHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHHCT----TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCHHHHHHHhhC----CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe
Confidence 34445555543 478899999999999999887643 1122222222110 0 1345555
Q ss_pred cccccccCCCCCCCC-eeeeeeCCCccchhhhHHHHHHhhhc-cCCcEEEEecCCccccccccCCCceeeeccccccCCc
Q 000955 583 RDWMTVEPKELAPGS-RLIMGLNPPFGVKAGLANKFINKALE-FNPKLLILIVPPETERLDRKESAYELVWEDDQFLSGK 660 (1210)
Q Consensus 583 ~dw~~v~~~elp~G~-~LimgLnPPfg~~a~lAnkFi~kal~-F~PkliilI~P~~t~rld~k~~~Y~liwed~~~l~gk 660 (1210)
.|+.... ++.++ -+|+-.+.=.-+...-..+|+..+.. .+|.=+++++|.. .|...|..-
T Consensus 91 ~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~---------~~~~~~~~~------ 152 (217)
T 3jwh_A 91 GALTYQD---KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNI---------EYNVKFANL------ 152 (217)
T ss_dssp CCTTSCC---GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBH---------HHHHHTC--------
T ss_pred CCccccc---ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCc---------ccchhhccc------
Confidence 5542111 11121 24443232111111122455555544 4788888887762 244444211
Q ss_pred ceecCCCcccchhhhcccccCCCCeeeeecchhHHHHHHHHHHhCC
Q 000955 661 SFYLPGSVDENDKQMDQWNMTAPPLYLWSRHDYAAHHKALAEKHGH 706 (1210)
Q Consensus 661 sFYlPGsvd~ndk~~eqwn~~pP~l~LWsr~d~~~~h~~iA~~~gH 706 (1210)
+.. ....+...+.|++.++.++=..+++++|-
T Consensus 153 ----~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf 184 (217)
T 3jwh_A 153 ----PAG----------KLRHKDHRFEWTRSQFQNWANKITERFAY 184 (217)
T ss_dssp -----------------------CCSCBCHHHHHHHHHHHHHHSSE
T ss_pred ----ccc----------cccccccccccCHHHHHHHHHHHHHHcCc
Confidence 110 00123345669999999999999999983
No 154
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.15 E-value=0.66 Score=41.10 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=25.8
Q ss_pred cCCCccCCCCCCceeeccccC---cccccccCCCCcccccccccccccccccc
Q 000955 162 CKQGENKADSDLQFAVCRRCP---KAYHRKCLPRKIAFEDKLEEGIITRAWEG 211 (1210)
Q Consensus 162 CkkseDkn~~egqLIrCdRCP---KAYH~kCLPPpIafed~~eE~Ip~RAW~C 211 (1210)
|++..+ +.||.|+.|. .+||..|+.... .+...|.|
T Consensus 11 C~~~~~-----g~MI~CD~cdC~~~WfH~~Cvgl~~---------~p~~~w~C 49 (70)
T 1x4i_A 11 CNQVSY-----GEMVGCDNQDCPIEWFHYGCVGLTE---------APKGKWYC 49 (70)
T ss_dssp TSCCCC-----SSEECCSCTTCSCCCEEHHHHTCSS---------CCSSCCCC
T ss_pred cCCCCC-----CCEeEeCCCCCCccCCcccccccCc---------CCCCCEEC
Confidence 766543 2599999964 799999998542 24567876
No 155
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=79.53 E-value=0.92 Score=37.64 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=23.2
Q ss_pred ccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 161 ICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 161 vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
.|++..+ +..||.|+.|..+||..|+...
T Consensus 8 ~C~~~~~----~~~MI~Cd~C~~W~H~~Cvgi~ 36 (52)
T 3o7a_A 8 FCMKPFA----GRPMIECNECHTWIHLSCAKIR 36 (52)
T ss_dssp TTCCBCT----TCCEEECTTTCCEEETTTTTCC
T ss_pred EeCCcCC----CCCEEEcCCCCccccccccCCC
Confidence 5776654 2469999999999999998764
No 156
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=79.40 E-value=1.4 Score=46.45 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=61.1
Q ss_pred ccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC---------------------CCCCccccccccccccCC
Q 000955 533 VNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP---------------------AKNDFNFEKRDWMTVEPK 591 (1210)
Q Consensus 533 v~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~---------------------~kn~f~Fe~~dw~~v~~~ 591 (1210)
+.+|++|||++||.-.|+..|-++ | |..--.|+=+ -.|...|...|+.+.-+
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~----g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~- 153 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL----G--LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP- 153 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT----T--CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH-
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh----C--CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH-
Confidence 356899999999999999888653 2 2222233222 12346677666655311
Q ss_pred CCCC--CCeeeeeeCCCccchh--h-----------------hHHHHHHhhhccCCcEEEEecCCccccccccC
Q 000955 592 ELAP--GSRLIMGLNPPFGVKA--G-----------------LANKFINKALEFNPKLLILIVPPETERLDRKE 644 (1210)
Q Consensus 592 elp~--G~~LimgLnPPfg~~a--~-----------------lAnkFi~kal~F~PkliilI~P~~t~rld~k~ 644 (1210)
.++. ++.=++-+||||.... + ....++..|+...++.+|+--|....-|+...
T Consensus 154 ~~~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~~vvvk~p~~~~~l~~~~ 227 (258)
T 2r6z_A 154 ALVKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKKRVVVKRPRLGEHLAGQA 227 (258)
T ss_dssp HHHHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSSEEEEEEETTCCCGGGCC
T ss_pred hhhccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCcEEEEEcCCCChhhhhcC
Confidence 1221 2222444799997542 1 14466778888888888877777666666543
No 157
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=79.35 E-value=1.9 Score=45.18 Aligned_cols=71 Identities=17% Similarity=0.076 Sum_probs=42.4
Q ss_pred ccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC-------------CCCccccccccccccCCCCCCCCee
Q 000955 533 VNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA-------------KNDFNFEKRDWMTVEPKELAPGSRL 599 (1210)
Q Consensus 533 v~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~-------------kn~f~Fe~~dw~~v~~~elp~G~~L 599 (1210)
+.+|++|+|++||.-.|+..+.++. +.+..--.|+-+. -.+..|...|..+. +. .+..=
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~----~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~---~~~~D 188 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYS----KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL---KDVAD 188 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT----CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC---TTCEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc---cCCce
Confidence 7899999999999999999886642 1222222333210 01345666676665 32 23333
Q ss_pred eeeeCCCccchh
Q 000955 600 IMGLNPPFGVKA 611 (1210)
Q Consensus 600 imgLnPPfg~~a 611 (1210)
++-+|||++...
T Consensus 189 ~Vi~d~p~~~~~ 200 (272)
T 3a27_A 189 RVIMGYVHKTHK 200 (272)
T ss_dssp EEEECCCSSGGG
T ss_pred EEEECCcccHHH
Confidence 344689986544
No 158
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=79.22 E-value=1.1 Score=49.05 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=56.5
Q ss_pred cchHHHHHhhccCCccccccccchhhhhhhcccchhHHHHHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHHhhhcccc
Q 000955 420 SVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVY 499 (1210)
Q Consensus 420 s~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~wk~kL~vy 499 (1210)
-.|+.++||+.--. -+|..|+.--..|-+|---.++|.||++=+.+++.
T Consensus 5 ~~tlg~~wk~~ln~-----~~k~~f~~y~~~~i~e~dr~~a~~~~~~g~~~~g~-------------------------- 53 (269)
T 2px2_A 5 GRTLGEQWKEKLNA-----MGKEEFFSYRKEAILEVDRTEARRARREGNKVGGH-------------------------- 53 (269)
T ss_dssp -CCHHHHHHHHHHT-----SCHHHHHHHHTTTCEEECGGGTTC-------CCSC--------------------------
T ss_pred cCchHHHHHHHHhc-----cCHHHHHHHhhcCceEechHHHHHHHhcCCCcCCC--------------------------
Confidence 45777777764321 13334555555666666556677777754433221
Q ss_pred cccccccccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 500 LAPFLHGMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 500 laP~l~G~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
|-| --.+||.||.+| + ++++|++|||+.|+--.||+...++
T Consensus 54 ---------yRS-----RAayKL~EIdeK-~-likpg~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 54 ---------PVS-----RGTAKLRWLVER-R-FVQPIGKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp ---------CSS-----THHHHHHHHHHT-T-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred ---------ccc-----HHHHHHHHHHHc-C-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence 111 146799999999 5 9999999999999999999999774
No 159
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=78.83 E-value=0.57 Score=50.55 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=24.0
Q ss_pred HhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 527 DKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 527 ~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
.|+.-++++|++|+|++||.--|+-.+-+
T Consensus 117 ~ri~~~~~~g~~VlD~~aG~G~~~i~~a~ 145 (278)
T 3k6r_A 117 VRMAKVAKPDELVVDMFAGIGHLSLPIAV 145 (278)
T ss_dssp HHHHHHCCTTCEEEETTCTTTTTTHHHHH
T ss_pred HHHHHhcCCCCEEEEecCcCcHHHHHHHH
Confidence 35556789999999999999999987644
No 160
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=78.80 E-value=6.1 Score=37.14 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=66.5
Q ss_pred cccccccc--ccCcccchh---hhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCcccccccccc-----
Q 000955 503 FLHGMRYT--SFGRHFTKV---DKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDIL----- 572 (1210)
Q Consensus 503 ~l~G~ryt--S~grhFTk~---ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~----- 572 (1210)
.+.|..|. +-...|+-. +-.+.+++.|.. .++++|+|+.||.-.|+..+.++ + +.+--.|+-
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vLdiG~G~G~~~~~~~~~----~--~~v~~~D~~~~~~~ 88 (194)
T 1dus_A 17 ILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVV--DKDDDILDLGCGYGVIGIALADE----V--KSTTMADINRRAIK 88 (194)
T ss_dssp EETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC--CTTCEEEEETCTTSHHHHHHGGG----S--SEEEEEESCHHHHH
T ss_pred ecCCCceEEEeCCCcCCccccchHHHHHHHHccc--CCCCeEEEeCCCCCHHHHHHHHc----C--CeEEEEECCHHHHH
Confidence 34455553 233445444 456667777753 48999999999999998877543 2 222222221
Q ss_pred ---------CCCC-CccccccccccccCCCCCCCCe-eeeeeCCCccchhhhHHHHHHhhhc-cCCc-EEEEecCC
Q 000955 573 ---------PAKN-DFNFEKRDWMTVEPKELAPGSR-LIMGLNPPFGVKAGLANKFINKALE-FNPK-LLILIVPP 635 (1210)
Q Consensus 573 ---------~~kn-~f~Fe~~dw~~v~~~elp~G~~-LimgLnPPfg~~a~lAnkFi~kal~-F~Pk-liilI~P~ 635 (1210)
.-.| ...|...|+.+. ++.+.. +|+ .||||........+|+.++.. .+|. .||+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~-~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 89 LAKENIKLNNLDNYDIRVVHSDLYEN----VKDRKYNKII-TNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp HHHHHHHHTTCTTSCEEEEECSTTTT----CTTSCEEEEE-ECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred HHHHHHHHcCCCccceEEEECchhcc----cccCCceEEE-ECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 1111 266666666552 233433 444 599987533444566666544 3453 44455554
No 161
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=78.79 E-value=1.5 Score=45.93 Aligned_cols=81 Identities=7% Similarity=-0.031 Sum_probs=46.7
Q ss_pred hhcccccCCCcEEeccCCcchHHHHHHHHHHh--hCCcccc-------ccccccCCCCCccccccccccccCCCCCCCCe
Q 000955 528 KLHWYVNDGDMIVDFCCGANDFSCLMKKKLDE--TGKNCLY-------KNYDILPAKNDFNFEKRDWMTVEPKELAPGSR 598 (1210)
Q Consensus 528 ~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~--~gk~c~~-------kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~ 598 (1210)
+|.-++.+|++|+|++||.-.|+..+-++.-. +|.+.+- +|..+-.-.|...|...|..+..+ .++.
T Consensus 118 ~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~----~~~f 193 (278)
T 2frn_A 118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIA 193 (278)
T ss_dssp HHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCE
T ss_pred HHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc----cCCc
Confidence 33445789999999999999999988664321 2222221 222222223445676666655544 2333
Q ss_pred eeeeeCCCccchhh
Q 000955 599 LIMGLNPPFGVKAG 612 (1210)
Q Consensus 599 LimgLnPPfg~~a~ 612 (1210)
=++-+|||++....
T Consensus 194 D~Vi~~~p~~~~~~ 207 (278)
T 2frn_A 194 DRILMGYVVRTHEF 207 (278)
T ss_dssp EEEEECCCSSGGGG
T ss_pred cEEEECCchhHHHH
Confidence 23345999876433
No 162
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=78.68 E-value=1 Score=39.28 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=21.7
Q ss_pred ccCCCccCCCCCCceeecc--ccCcccccccCCC
Q 000955 161 ICKQGENKADSDLQFAVCR--RCPKAYHRKCLPR 192 (1210)
Q Consensus 161 vCkkseDkn~~egqLIrCd--RCPKAYH~kCLPP 192 (1210)
.|+...+ .+.||.|+ +|..+||..|+.-
T Consensus 14 ~C~~~~~----~g~mI~CD~~~C~~W~H~~Cvgi 43 (68)
T 2rsd_A 14 ICSSTMV----NDSMIQCEDQRCQVWQHLNCVLI 43 (68)
T ss_dssp TTCCCSC----CSCEEECSCTTTCEEEETTTSCC
T ss_pred ECCCCcC----CCCEEEECCCCCCCeEchhhCCC
Confidence 5766543 24699998 6999999999854
No 163
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=78.65 E-value=1.7 Score=42.73 Aligned_cols=149 Identities=14% Similarity=0.229 Sum_probs=76.9
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC-------C-----------CCccc
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA-------K-----------NDFNF 580 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~-------k-----------n~f~F 580 (1210)
...++.|++.|.. .++.+|+|+.||.-.|+..|.++. ....+--.|+=+. + ....|
T Consensus 15 ~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~ 88 (219)
T 3jwg_A 15 QQRLGTVVAVLKS--VNAKKVIDLGCGEGNLLSLLLKDK----SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88 (219)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHTST----TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEE
T ss_pred HHHHHHHHHHHhh--cCCCEEEEecCCCCHHHHHHHhcC----CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEE
Confidence 3445556665543 578899999999999999886643 1122222222110 0 04455
Q ss_pred cccccccccCCCCCCCC-eeeeeeCCCccchhhhHHHHHHhhhc-cCCcEEEEecCCccccccccCCCceeeeccccccC
Q 000955 581 EKRDWMTVEPKELAPGS-RLIMGLNPPFGVKAGLANKFINKALE-FNPKLLILIVPPETERLDRKESAYELVWEDDQFLS 658 (1210)
Q Consensus 581 e~~dw~~v~~~elp~G~-~LimgLnPPfg~~a~lAnkFi~kal~-F~PkliilI~P~~t~rld~k~~~Y~liwed~~~l~ 658 (1210)
..-|+.... ++.++ -+|+-.+.=.-+...-..+|+..+.. .+|.-+|+++|. ..|+..|..-.
T Consensus 89 ~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~---------~~~~~~~~~~~--- 153 (219)
T 3jwg_A 89 FQSSLVYRD---KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN---------KEYNFHYGNLF--- 153 (219)
T ss_dssp EECCSSSCC---GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB---------GGGGGCCCCT----
T ss_pred EeCcccccc---cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc---------hhhhhhhcccC---
Confidence 555542211 11121 24443222111111112355555443 378887777775 23444442211
Q ss_pred CcceecCCCcccchhhhcccccCCCCeeeeecchhHHHHHHHHHHhC
Q 000955 659 GKSFYLPGSVDENDKQMDQWNMTAPPLYLWSRHDYAAHHKALAEKHG 705 (1210)
Q Consensus 659 gksFYlPGsvd~ndk~~eqwn~~pP~l~LWsr~d~~~~h~~iA~~~g 705 (1210)
...|. -+-..+.|++.++.++=..+++++|
T Consensus 154 ~~~~~-----------------~~~~~~~~~~~~l~~~~~~l~~~~G 183 (219)
T 3jwg_A 154 EGNLR-----------------HRDHRFEWTRKEFQTWAVKVAEKYG 183 (219)
T ss_dssp ----G-----------------GGCCTTSBCHHHHHHHHHHHHHHHT
T ss_pred ccccc-----------------ccCceeeecHHHHHHHHHHHHHHCC
Confidence 00010 1223456899999999999999998
No 164
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=77.98 E-value=3.1 Score=41.15 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=40.5
Q ss_pred ccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 509 YTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 509 ytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
+..+|..+..+.....+++.|.-++++|++|+|++||.-.++..|-+.+
T Consensus 51 ~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~ 99 (226)
T 1i1n_A 51 SIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMV 99 (226)
T ss_dssp EEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred ccCCCceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHh
Confidence 3456777888887778888887788999999999999999999887654
No 165
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=77.84 E-value=0.65 Score=42.98 Aligned_cols=37 Identities=24% Similarity=0.708 Sum_probs=25.4
Q ss_pred CeeccccccCCccccccccCcccccccCCCChh------hhhccccccccchhh
Q 000955 41 DLLCCEGRCLRSFHATIDAGEESHCASLGLTKD------EVEAMLNFFCKNCEY 88 (1210)
Q Consensus 41 ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~------evqp~~sW~CpnCe~ 88 (1210)
.+|.|+ .|.++||.. | ++++.. .++....|.|+.|..
T Consensus 1 ~mi~c~-~c~~w~H~~--------c--~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCG-KCDRWVHSK--------C--ENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCCS-CCSSCHHHH--------H--CCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred Cccccc-cCCCccCCc--------c--cccCHHHHHHHhhccccceeeCccccc
Confidence 378999 699999999 4 455542 111234699998864
No 166
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=77.63 E-value=2.2 Score=39.70 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=30.6
Q ss_pred chhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 517 TKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 517 Tk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
|.....+.+++.|..++.+|.+|+|++||.-.++..+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~ 61 (171)
T 1ws6_A 23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAAS 61 (171)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHH
Confidence 344555667777777777899999999999999887755
No 167
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=76.56 E-value=1.3 Score=49.04 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=56.5
Q ss_pred cCCCcEEeccCCcchHHHHHHHHH---HhhCCcccc-------ccccccC--CCCCccccccccccccCCCCCCCCeeee
Q 000955 534 NDGDMIVDFCCGANDFSCLMKKKL---DETGKNCLY-------KNYDILP--AKNDFNFEKRDWMTVEPKELAPGSRLIM 601 (1210)
Q Consensus 534 ~~gd~ivdfccg~n~fs~lmk~kl---~~~gk~c~~-------kn~dl~~--~kn~f~Fe~~dw~~v~~~elp~G~~Lim 601 (1210)
.++.+|+|+.||.-.|+..+.+.. .-+|.+-+. +|+.... ....+.|...|.+. .++.++.=+|
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~----~~~~~~fD~I 296 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS----GVEPFRFNAV 296 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT----TCCTTCEEEE
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc----cCCCCCeeEE
Confidence 356899999999999999887653 111222111 1221111 11135566666654 3556655555
Q ss_pred eeCCCcc----chhhhHHHHHHhhhc-cCCcEEEEec
Q 000955 602 GLNPPFG----VKAGLANKFINKALE-FNPKLLILIV 633 (1210)
Q Consensus 602 gLnPPfg----~~a~lAnkFi~kal~-F~PkliilI~ 633 (1210)
-.||||. +...++.+|+..+.. .+|.=+++|+
T Consensus 297 i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 297 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp EECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5699997 446677889998876 4776555554
No 168
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=76.10 E-value=2.3 Score=40.77 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=31.4
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
..||.++.+++. ++.+|++|||++||.-.|+..+-+++
T Consensus 7 ~~kl~~l~~~~~-~~~~~~~vLDlGcG~G~~~~~la~~~ 44 (196)
T 2nyu_A 7 AFKLLEVNERHQ-ILRPGLRVLDCGAAPGAWSQVAVQKV 44 (196)
T ss_dssp HHHHHHHHHHHC-CCCTTCEEEEETCCSCHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 357888887775 47899999999999999999987653
No 169
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=75.71 E-value=8.7 Score=42.82 Aligned_cols=105 Identities=20% Similarity=0.186 Sum_probs=60.7
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC----------CC--Cccccccccc
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA----------KN--DFNFEKRDWM 586 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~----------kn--~f~Fe~~dw~ 586 (1210)
...++.+.+.+.|...+|.+|+|++||.-.|+..|.+. |. .+--.|+=+. .| ...|...|+.
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~----g~--~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~ 290 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM----GA--EVVGVEDDLASVLSLQKGLEANALKAQALHSDVD 290 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT----TC--EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTT
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc----CC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchh
Confidence 33455555666666678999999999999999988663 21 2222222110 01 2566666666
Q ss_pred cccCCCCCCCCeeeeeeCCCccch----hhhHHHHHHhhhcc-CCcEEEEe
Q 000955 587 TVEPKELAPGSRLIMGLNPPFGVK----AGLANKFINKALEF-NPKLLILI 632 (1210)
Q Consensus 587 ~v~~~elp~G~~LimgLnPPfg~~----a~lAnkFi~kal~F-~PkliilI 632 (1210)
+..+. .++.=++-.||||-.. .....+|+..+... +|.=+++|
T Consensus 291 ~~~~~---~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~i 338 (381)
T 3dmg_A 291 EALTE---EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338 (381)
T ss_dssp TTSCT---TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcccc---CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEE
Confidence 54332 2444344469999852 34566787766543 55533333
No 170
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=75.48 E-value=6.3 Score=42.61 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=32.3
Q ss_pred hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 518 KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 518 k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
...||.+|.++ -++.+|.+|||+|||.-.|+..+-++
T Consensus 67 ~a~KL~~i~~~--~~~~~g~~VLDlGcG~G~~s~~la~~ 103 (305)
T 2p41_A 67 GSAKLRWFVER--NLVTPEGKVVDLGCGRGGWSYYCGGL 103 (305)
T ss_dssp HHHHHHHHHHT--TSSCCCEEEEEETCTTSHHHHHHHTS
T ss_pred HHHHHHHHHHc--CCCCCCCEEEEEcCCCCHHHHHHHhc
Confidence 45689999999 56789999999999999999998765
No 171
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=75.21 E-value=0.82 Score=53.24 Aligned_cols=30 Identities=20% Similarity=0.558 Sum_probs=23.7
Q ss_pred ccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 161 ICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 161 vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
.|++..+. .+.|++|+.|..+||..|+.-.
T Consensus 41 ~C~~~~d~---~~~MIqCd~C~~WfH~~Cvgl~ 70 (488)
T 3kv5_D 41 VCRQPYDV---NRFMIECDICKDWFHGSCVGVE 70 (488)
T ss_dssp TTTEECCT---TSCEEEBTTTCCEEEHHHHTCC
T ss_pred eCCCcCCC---CCCeEEccCCCCceeeeecCcC
Confidence 78776542 3469999999999999998553
No 172
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=74.55 E-value=3.3 Score=41.90 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=19.4
Q ss_pred CCCcEEeccCCcchHHHHHHHHH
Q 000955 535 DGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 535 ~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
++.+|+|++||.-.|+..+-++.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~ 87 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL 87 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHhC
Confidence 68899999999999988776543
No 173
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=74.16 E-value=0.77 Score=40.65 Aligned_cols=30 Identities=17% Similarity=0.506 Sum_probs=23.6
Q ss_pred ccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 161 ICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 161 vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
.|+...+. +..||+|+.|..+||..|+...
T Consensus 14 iC~~~~~~---~~~MI~Cd~C~~WfH~~Cvg~~ 43 (75)
T 3kqi_A 14 VCRLPYDV---TRFMIECDACKDWFHGSCVGVE 43 (75)
T ss_dssp TTTEECCT---TSCEEECTTTCCEEEHHHHTCC
T ss_pred ECCCcCCC---CCCEEEcCCCCCCEeccccccc
Confidence 67776532 3469999999999999998654
No 174
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=72.97 E-value=3.2 Score=40.05 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=23.5
Q ss_pred ccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 531 WYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 531 ~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
-++.+|++|+|++||.-.++..+-+++
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~ 44 (197)
T 3eey_A 18 MFVKEGDTVVDATCGNGNDTAFLASLV 44 (197)
T ss_dssp HHCCTTCEEEESCCTTSHHHHHHHHHH
T ss_pred hcCCCCCEEEEcCCCCCHHHHHHHHHh
Confidence 368899999999999999999887754
No 175
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=72.92 E-value=2.5 Score=40.68 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC-----------CCCCccccccccccccCCCC
Q 000955 525 IVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP-----------AKNDFNFEKRDWMTVEPKEL 593 (1210)
Q Consensus 525 i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~-----------~kn~f~Fe~~dw~~v~~~el 593 (1210)
+.+.|.-++.++++|+|+.||.-.+...|.++ |.. .+-..|+-+ ......|...|..++ .+
T Consensus 32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~----~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~---~~ 103 (215)
T 2pxx_A 32 FRALLEPELRPEDRILVLGCGNSALSYELFLG----GFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL---DF 103 (215)
T ss_dssp HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHT----TCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC---CS
T ss_pred HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHc----CCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC---CC
Confidence 45555556799999999999999998887653 221 233333311 113456666666554 24
Q ss_pred CCCCeeeeeeCCCcc
Q 000955 594 APGSRLIMGLNPPFG 608 (1210)
Q Consensus 594 p~G~~LimgLnPPfg 608 (1210)
+.++.=++-.+++|.
T Consensus 104 ~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 104 PSASFDVVLEKGTLD 118 (215)
T ss_dssp CSSCEEEEEEESHHH
T ss_pred CCCcccEEEECcchh
Confidence 555533333466664
No 176
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=72.38 E-value=6.7 Score=42.62 Aligned_cols=127 Identities=18% Similarity=0.264 Sum_probs=75.1
Q ss_pred Ccccchhh---hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC------------CCC
Q 000955 513 GRHFTKVD---KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA------------KND 577 (1210)
Q Consensus 513 grhFTk~e---kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~------------kn~ 577 (1210)
..|.+..| .|.+++..+-.. .+..+|+|+=||.|-|+-.+- ..-.|--+||=+. .-.
T Consensus 81 ~~H~STrerLp~ld~fY~~i~~~-~~p~~VLDlGCG~gpLal~~~-------~~~~y~a~DId~~~i~~ar~~~~~~g~~ 152 (253)
T 3frh_A 81 SLHASTKERLAELDTLYDFIFSA-ETPRRVLDIACGLNPLALYER-------GIASVWGCDIHQGLGDVITPFAREKDWD 152 (253)
T ss_dssp TTSHHHHHHGGGHHHHHHHHTSS-CCCSEEEEETCTTTHHHHHHT-------TCSEEEEEESBHHHHHHHHHHHHHTTCE
T ss_pred hhCCCHHHHhhhHHHHHHHHhcC-CCCCeEEEecCCccHHHHHhc-------cCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 46888877 556777777777 778899999999999998642 3334555555322 245
Q ss_pred ccccccccccccCCCCCCCCeeeeeeCCCc---cchhhhHHHHHHhhhccCCcEEEEecC--CccccccccCCCceeeec
Q 000955 578 FNFEKRDWMTVEPKELAPGSRLIMGLNPPF---GVKAGLANKFINKALEFNPKLLILIVP--PETERLDRKESAYELVWE 652 (1210)
Q Consensus 578 f~Fe~~dw~~v~~~elp~G~~LimgLnPPf---g~~a~lAnkFi~kal~F~PkliilI~P--~~t~rld~k~~~Y~liwe 652 (1210)
+.|+-.|-++.-+.+ .++-.++.+-=|. --++++. ++++ ..+|+-||+-+| ...-|-=.-...|.-.||
T Consensus 153 ~~~~v~D~~~~~~~~--~~DvvLllk~lh~LE~q~~~~~~-~ll~---aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e 226 (253)
T 3frh_A 153 FTFALQDVLCAPPAE--AGDLALIFKLLPLLEREQAGSAM-ALLQ---SLNTPRMAVSFPTRSLGGRGKGMEANYAAWFE 226 (253)
T ss_dssp EEEEECCTTTSCCCC--BCSEEEEESCHHHHHHHSTTHHH-HHHH---HCBCSEEEEEEECC-----------CHHHHHH
T ss_pred ceEEEeecccCCCCC--CcchHHHHHHHHHhhhhchhhHH-HHHH---HhcCCCEEEEcChHHhcCCCcchhhHHHHHHH
Confidence 667766766665553 4554434422221 1122333 7777 678889999999 222222222346777776
Q ss_pred c
Q 000955 653 D 653 (1210)
Q Consensus 653 d 653 (1210)
.
T Consensus 227 ~ 227 (253)
T 3frh_A 227 G 227 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 177
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=71.84 E-value=1.2 Score=45.41 Aligned_cols=96 Identities=10% Similarity=0.083 Sum_probs=55.5
Q ss_pred ccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC-------------CCCccccccccccccCCCCCCCC
Q 000955 531 WYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA-------------KNDFNFEKRDWMTVEPKELAPGS 597 (1210)
Q Consensus 531 ~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~-------------kn~f~Fe~~dw~~v~~~elp~G~ 597 (1210)
+|-.++.+|||++||.-.|+..|.++.- .+.+--.|+-+. -.+..|..-|-..+-+..++.|+
T Consensus 30 ~f~~~~~~vLDiGcG~G~~~~~lA~~~p----~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~ 105 (218)
T 3dxy_A 30 LFGREAPVTLEIGFGMGASLVAMAKDRP----EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNS 105 (218)
T ss_dssp HHSSCCCEEEEESCTTCHHHHHHHHHCT----TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTC
T ss_pred HcCCCCCeEEEEeeeChHHHHHHHHHCC----CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCC
Confidence 4566899999999999999998876432 222222232211 12366666665554333466777
Q ss_pred eeeeeeC--CCccchhhhHH-----HHHHhhhc-cCCcEEE
Q 000955 598 RLIMGLN--PPFGVKAGLAN-----KFINKALE-FNPKLLI 630 (1210)
Q Consensus 598 ~LimgLn--PPfg~~a~lAn-----kFi~kal~-F~Pklii 630 (1210)
.=++-+| +|+..+..... .|+..+.. .||.=++
T Consensus 106 ~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l 146 (218)
T 3dxy_A 106 LRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVF 146 (218)
T ss_dssp EEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEE
T ss_pred hheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEE
Confidence 5555556 67665544322 47766544 4554333
No 178
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=70.83 E-value=5.7 Score=39.31 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=40.6
Q ss_pred ccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 507 MRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 507 ~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
..+..+|.+...+.-...+++.|.-.+.+|+.|+|+.||.-.++..|.+.+
T Consensus 52 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~ 102 (227)
T 2pbf_A 52 PVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKM 102 (227)
T ss_dssp CEEEETTEEECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHT
T ss_pred ccccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHh
Confidence 334567777777777777788876678999999999999999998886643
No 179
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=70.47 E-value=4.4 Score=44.38 Aligned_cols=33 Identities=12% Similarity=0.306 Sum_probs=23.3
Q ss_pred HHHHHhhccccc-CCCcEEeccCCcchHHHHHHH
Q 000955 523 QAIVDKLHWYVN-DGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 523 ~~i~~~Lh~yv~-~gd~ivdfccg~n~fs~lmk~ 555 (1210)
+.+++.+.-++. .|++|+|++||.-.|+..|-+
T Consensus 200 ~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~ 233 (369)
T 3bt7_A 200 IQMLEWALDVTKGSKGDLLELYCGNGNFSLALAR 233 (369)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGG
T ss_pred HHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHh
Confidence 444444443443 378999999999999987754
No 180
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=70.25 E-value=1.4 Score=44.95 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=37.4
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceec
Q 000955 90 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTC 154 (1210)
Q Consensus 90 QHqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrC 154 (1210)
+..|.+|+..| +|+.|+...|.+.|=..||..+..+.. +. .+.....|.|
T Consensus 79 ~~yC~wC~~Gg--------~l~~Cdn~~C~r~FC~~CI~~nvG~~~------~~-~i~~~d~W~C 128 (159)
T 3a1b_A 79 QSYCTICCGGR--------EVLMCGNNNCCRCFCVECVDLLVGPGA------AQ-AAIKEDPWNC 128 (159)
T ss_dssp BSSCTTTSCCS--------EEEECSSTTTCCEEEHHHHHHHTCTTH------HH-HHHTSSSCCC
T ss_pred cceeeEecCCC--------eEEeeCCCCCCCchhHHHHHHhcCHhH------HH-HHhccCCCEE
Confidence 45799998654 799999999999999999998875531 21 2344567875
No 181
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=70.03 E-value=2.5 Score=46.52 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=30.7
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHH
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMK 554 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk 554 (1210)
-.||.||.+|. ++.+|.+|||+|||--.|++..-
T Consensus 76 AfKL~ei~eK~--~Lk~~~~VLDLGaAPGGWsQvAa 109 (282)
T 3gcz_A 76 SAKLRWMEERG--YVKPTGIVVDLGCGRGGWSYYAA 109 (282)
T ss_dssp HHHHHHHHHTT--SCCCCEEEEEETCTTCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHH
Confidence 46899999994 99999999999999999999764
No 182
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=69.97 E-value=2.5 Score=46.37 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=31.4
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
-+||.||.+| .++.+|.+|||++||--.|++..-+
T Consensus 60 A~KL~ei~ek--~~l~~~~~VLDLGaAPGGWSQvAa~ 94 (277)
T 3evf_A 60 TAKLRWFHER--GYVKLEGRVIDLGCGRGGWCYYAAA 94 (277)
T ss_dssp HHHHHHHHHT--TSSCCCEEEEEETCTTCHHHHHHHT
T ss_pred HHHHHHHHHh--CCCCCCCEEEEecCCCCHHHHHHHH
Confidence 5789999999 6999999999999999999997643
No 183
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=69.85 E-value=2.3 Score=45.05 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=31.6
Q ss_pred hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 518 KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 518 k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
-.+||.++.++ -++.+|++|||++||.-.|+..+-++
T Consensus 59 ~a~KL~~i~~~--~~~~~g~~VLDlGcGtG~~s~~la~~ 95 (265)
T 2oxt_A 59 GTAKLAWMEER--GYVELTGRVVDLGCGRGGWSYYAASR 95 (265)
T ss_dssp HHHHHHHHHHH--TSCCCCEEEEEESCTTSHHHHHHHTS
T ss_pred HHHHHHHHHHc--CCCCCCCEEEEeCcCCCHHHHHHHHc
Confidence 34778889888 56789999999999999999988664
No 184
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=69.77 E-value=8.4 Score=37.66 Aligned_cols=45 Identities=9% Similarity=0.321 Sum_probs=37.7
Q ss_pred ccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
.+|++++..+.+..+++.|+ +.+|++|+|+.||.-.++..+.+.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 99 (215)
T 2yxe_A 55 GYGQTISAIHMVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIV 99 (215)
T ss_dssp ETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCcEeCcHHHHHHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHh
Confidence 45677788888888988885 6799999999999999998887654
No 185
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=69.62 E-value=6.6 Score=42.66 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.6
Q ss_pred ccCCCcEEeccCCcchHHHHHHHHH
Q 000955 533 VNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 533 v~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
+++|++|+|+|||.-.++..|-+++
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~ 124 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALL 124 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHh
Confidence 5789999999999999998886654
No 186
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=69.35 E-value=4.9 Score=39.77 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=36.8
Q ss_pred cCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 512 FGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 512 ~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
+|++.+..+.+..+++.|. +.+|++|+|+.||.-.++..+.+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~ 91 (231)
T 1vbf_A 49 PGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEI 91 (231)
T ss_dssp TTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHH
Confidence 5777888888888988885 689999999999999999888664
No 187
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=68.60 E-value=17 Score=36.52 Aligned_cols=45 Identities=11% Similarity=0.212 Sum_probs=37.5
Q ss_pred ccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
..|.+++.......+++.|. +.+|++|+|+.||.-.|+..|-+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~ 113 (235)
T 1jg1_A 69 PAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIV 113 (235)
T ss_dssp STTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHh
Confidence 45677778888888888885 6799999999999999998886654
No 188
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=68.36 E-value=4.7 Score=40.22 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=41.4
Q ss_pred ccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHH
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLD 558 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~ 558 (1210)
.+|++++.+.-...+++.|.-++.+|+.|+|+.||.-.++..|-+.+.
T Consensus 60 ~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~ 107 (227)
T 1r18_A 60 GGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIK 107 (227)
T ss_dssp ETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcc
Confidence 467888888888899998877789999999999999999998877554
No 189
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=67.85 E-value=6.3 Score=43.15 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=60.9
Q ss_pred ccCcc-cchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH---HhhCCcccc-------ccccccCCCCCcc
Q 000955 511 SFGRH-FTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL---DETGKNCLY-------KNYDILPAKNDFN 579 (1210)
Q Consensus 511 S~grh-FTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl---~~~gk~c~~-------kn~dl~~~kn~f~ 579 (1210)
.|... +|.......++-.......+|.+|+|++ |.-.|+..+.... .-++.+..- +|.....-. +..
T Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~ 224 (373)
T 2qm3_A 147 EFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIE 224 (373)
T ss_dssp GGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEE
T ss_pred hcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEE
Confidence 35553 3433333333322222344689999999 9999998886531 112222221 111111101 456
Q ss_pred ccccccccccCCCCCCCCe-eeeeeCCCccchhhhHHHHHHhhhcc-CC-c-EEEEec
Q 000955 580 FEKRDWMTVEPKELAPGSR-LIMGLNPPFGVKAGLANKFINKALEF-NP-K-LLILIV 633 (1210)
Q Consensus 580 Fe~~dw~~v~~~elp~G~~-LimgLnPPfg~~a~lAnkFi~kal~F-~P-k-liilI~ 633 (1210)
|...|+...-|.++ .++. +|+ +||||+..+ + .+|+.+|+.. +| - ++|+.+
T Consensus 225 ~~~~D~~~~l~~~~-~~~fD~Vi-~~~p~~~~~-~-~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 225 IFTFDLRKPLPDYA-LHKFDTFI-TDPPETLEA-I-RAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp EECCCTTSCCCTTT-SSCBSEEE-ECCCSSHHH-H-HHHHHHHHHTBCSTTCEEEEEE
T ss_pred EEEChhhhhchhhc-cCCccEEE-ECCCCchHH-H-HHHHHHHHHHcccCCeEEEEEE
Confidence 66667665111111 1332 444 599999876 3 8899988764 55 3 544443
No 190
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=67.48 E-value=3.7 Score=45.00 Aligned_cols=83 Identities=12% Similarity=0.283 Sum_probs=51.2
Q ss_pred cEEeccCCcchHHHHHHHHHHhhCC--cccc-------------ccccccCCCCCccccccccccccCCCCCC-CCeeee
Q 000955 538 MIVDFCCGANDFSCLMKKKLDETGK--NCLY-------------KNYDILPAKNDFNFEKRDWMTVEPKELAP-GSRLIM 601 (1210)
Q Consensus 538 ~ivdfccg~n~fs~lmk~kl~~~gk--~c~~-------------kn~dl~~~kn~f~Fe~~dw~~v~~~elp~-G~~Lim 601 (1210)
+||||+||.--|+.=+.. .|. .|.+ +||. ...|...|-.++.+++|+. .--||+
T Consensus 4 ~v~dLFaG~Gg~~~g~~~----~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 4 RVLELYSGVGGMHHALRE----SCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp EEEEETCTTCHHHHHHHH----HTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred eEEEeCcCccHHHHHHHH----CCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEE
Confidence 699999999999987654 352 2322 3442 1123445666666555653 223566
Q ss_pred eeCCC---ccc----------hhhhHHHHHHhhhccC--CcEEEE
Q 000955 602 GLNPP---FGV----------KAGLANKFINKALEFN--PKLLIL 631 (1210)
Q Consensus 602 gLnPP---fg~----------~a~lAnkFi~kal~F~--Pkliil 631 (1210)
| .|| |.. ++.|--.|++-+.+.+ ||++|+
T Consensus 74 ~-gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ 117 (343)
T 1g55_A 74 M-SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILL 117 (343)
T ss_dssp E-CCC------------------CHHHHHHHHGGGCSSCCSEEEE
T ss_pred E-cCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEE
Confidence 6 688 543 4457778899888999 998877
No 191
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=67.33 E-value=4.6 Score=38.30 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=55.1
Q ss_pred hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC--------------CCCCccccccccc
Q 000955 521 KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP--------------AKNDFNFEKRDWM 586 (1210)
Q Consensus 521 kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~--------------~kn~f~Fe~~dw~ 586 (1210)
..+.+++.|-- ..++++|+|++||.-.|+..+.++ + .+..--.|+-+ -.+...|...|+.
T Consensus 18 ~~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~----~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 91 (177)
T 2esr_A 18 VRGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSR----G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE 91 (177)
T ss_dssp CHHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHT----T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH
T ss_pred HHHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHH
Confidence 34445554432 357899999999999998877553 1 12222223211 1134667777776
Q ss_pred cccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhc---cCCcE-EEEecCC
Q 000955 587 TVEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALE---FNPKL-LILIVPP 635 (1210)
Q Consensus 587 ~v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~---F~Pkl-iilI~P~ 635 (1210)
..-+. ++..=-+|+ +||||.. ....+++...++ .+|.= |++..+.
T Consensus 92 ~~~~~-~~~~fD~i~-~~~~~~~--~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 92 RAIDC-LTGRFDLVF-LDPPYAK--ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HHHHH-BCSCEEEEE-ECCSSHH--HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HhHHh-hcCCCCEEE-ECCCCCc--chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 63221 111223555 5999953 233455555432 35553 3333443
No 192
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=65.40 E-value=12 Score=36.48 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=32.1
Q ss_pred chhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 517 TKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 517 Tk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
|+.+-...++.+|. +.+|++|+|+.||.-.++..+.+.
T Consensus 24 ~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~ 61 (204)
T 3e05_A 24 TKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNL 61 (204)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHH
Confidence 77777788888884 679999999999999998888664
No 193
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=65.22 E-value=6 Score=44.23 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=54.6
Q ss_pred cEEeccCCcchHHHHHHHHHHhhCCcccc-------------ccccccCCCCCccccccccccccCCCC-----CCC-Ce
Q 000955 538 MIVDFCCGANDFSCLMKKKLDETGKNCLY-------------KNYDILPAKNDFNFEKRDWMTVEPKEL-----APG-SR 598 (1210)
Q Consensus 538 ~ivdfccg~n~fs~lmk~kl~~~gk~c~~-------------kn~dl~~~kn~f~Fe~~dw~~v~~~el-----p~G-~~ 598 (1210)
+||||+||+--|+.=+.. .|-.|.+ .||. ...+...|..++.++++ +.+ --
T Consensus 4 ~vidLFsG~GGlslG~~~----aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D 73 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAAR----AGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPID 73 (376)
T ss_dssp EEEEETCTTSHHHHHHHH----HTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred eEEEEccCcCHHHHHHHH----CCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCee
Confidence 589999999999976644 4654432 1321 11233456666655555 222 23
Q ss_pred eeeeeCCC---c---------cchhhhHHHHHHhhhccCCcEEEE
Q 000955 599 LIMGLNPP---F---------GVKAGLANKFINKALEFNPKLLIL 631 (1210)
Q Consensus 599 LimgLnPP---f---------g~~a~lAnkFi~kal~F~Pkliil 631 (1210)
||+| .|| | +.+..|.-.|+.-+-.++||++|+
T Consensus 74 ~i~g-gpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ 117 (376)
T 3g7u_A 74 GIIG-GPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLA 117 (376)
T ss_dssp EEEE-CCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEe-cCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEE
Confidence 6666 687 4 336678888999999999999998
No 194
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=64.44 E-value=25 Score=35.08 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=56.7
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC--------------CCCCcccccccccc
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP--------------AKNDFNFEKRDWMT 587 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~--------------~kn~f~Fe~~dw~~ 587 (1210)
+..+++.+. +.+|++|||+.||.-.|+..+.+.+ +..+.+--+|+-+ ...+..|...|+.+
T Consensus 85 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 85 ASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAV---GEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE 159 (258)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred HHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence 455666664 6799999999999999998886643 3333444444321 02346676667665
Q ss_pred ccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecCCc
Q 000955 588 VEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPE 636 (1210)
Q Consensus 588 v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P~~ 636 (1210)
. .++.++.=++-+++|-.. .+-+-+.++|.-. -.|++++|..
T Consensus 160 ~---~~~~~~~D~v~~~~~~~~---~~l~~~~~~L~~g-G~l~~~~~~~ 201 (258)
T 2pwy_A 160 A---ELEEAAYDGVALDLMEPW---KVLEKAALALKPD-RFLVAYLPNI 201 (258)
T ss_dssp C---CCCTTCEEEEEEESSCGG---GGHHHHHHHEEEE-EEEEEEESCH
T ss_pred c---CCCCCCcCEEEECCcCHH---HHHHHHHHhCCCC-CEEEEEeCCH
Confidence 4 244443222224776321 1222334455433 2455555654
No 195
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=64.00 E-value=8.1 Score=36.03 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=59.5
Q ss_pred ccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC-------------CCCcccc
Q 000955 515 HFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA-------------KNDFNFE 581 (1210)
Q Consensus 515 hFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~-------------kn~f~Fe 581 (1210)
..+..+-...+++.|. +.++++|+|+.||.-.++..|.+ ..+.+--.|+-+. -.+..|.
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~ 88 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK------RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQII 88 (183)
T ss_dssp CCCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT------TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CcCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 3566666677777774 46899999999999999888854 1122222222110 0236666
Q ss_pred ccccccccCCCCCCCC-eeeeeeCCCccchhhhHHHHHHhhhccCCc-EEEEecC
Q 000955 582 KRDWMTVEPKELAPGS-RLIMGLNPPFGVKAGLANKFINKALEFNPK-LLILIVP 634 (1210)
Q Consensus 582 ~~dw~~v~~~elp~G~-~LimgLnPPfg~~a~lAnkFi~kal~F~Pk-liilI~P 634 (1210)
..|+.+. ++.++ -+|+. ++| ..-.+|+..+... |. .||++.+
T Consensus 89 ~~d~~~~----~~~~~~D~i~~-~~~-----~~~~~~l~~~~~~-~gG~l~~~~~ 132 (183)
T 2yxd_A 89 KGRAEDV----LDKLEFNKAFI-GGT-----KNIEKIIEILDKK-KINHIVANTI 132 (183)
T ss_dssp ESCHHHH----GGGCCCSEEEE-CSC-----SCHHHHHHHHHHT-TCCEEEEEES
T ss_pred ECCcccc----ccCCCCcEEEE-CCc-----ccHHHHHHHHhhC-CCCEEEEEec
Confidence 7777652 22222 35554 455 3456778887777 65 4444443
No 196
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=62.45 E-value=3.7 Score=43.80 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=30.8
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
..||.++.++ -++.+|.+|||++||.-.|+..+-++
T Consensus 68 a~KL~~i~~~--~~~~~g~~VLDlGcGtG~~s~~la~~ 103 (276)
T 2wa2_A 68 TAKLAWIDER--GGVELKGTVVDLGCGRGSWSYYAASQ 103 (276)
T ss_dssp HHHHHHHHHT--TSCCCCEEEEEESCTTCHHHHHHHTS
T ss_pred HHHHHHHHHc--CCCCCCCEEEEeccCCCHHHHHHHHc
Confidence 4678888888 56789999999999999999988664
No 197
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=61.59 E-value=0.89 Score=41.82 Aligned_cols=60 Identities=27% Similarity=0.670 Sum_probs=36.7
Q ss_pred CCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCc-------------------cccccCCCccCCCCCCceee
Q 000955 117 TCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLH-------------------KCCICKQGENKADSDLQFAV 177 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH-------------------~C~vCkkseDkn~~egqLIr 177 (1210)
.||+.||..|+..++.. ...||.+ .|..|...-..........+
T Consensus 31 ~CgH~fc~~Ci~~~~~~-----------------~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~ 93 (133)
T 4ap4_A 31 ECGHVFCSQCLRDSLKN-----------------ANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIV 93 (133)
T ss_dssp TTCCEEEHHHHHHHHTT-----------------CSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEE
T ss_pred CCCChhhHHHHHHHHHh-----------------CCCCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceE
Confidence 79999999999987531 1245432 26666554221101123445
Q ss_pred ccccCcccccccCCCC
Q 000955 178 CRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 178 CdRCPKAYH~kCLPPp 193 (1210)
...|...||..|+..-
T Consensus 94 ~~~CgH~fc~~Ci~~~ 109 (133)
T 4ap4_A 94 STECGHVFCSQCLRDS 109 (133)
T ss_dssp EETTSBEEEHHHHHHH
T ss_pred eCCCCChhhHHHHHHH
Confidence 6678889999997664
No 198
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=61.54 E-value=8.2 Score=34.94 Aligned_cols=48 Identities=15% Similarity=0.343 Sum_probs=36.3
Q ss_pred CchHHHHHHHHHHhhhc--ccchHHHHHhhccCCccccccccchhhhhhhcccchhHHHHHHHHHHhcccCCC
Q 000955 402 LDEDSKRRLSSLMKDAA--SSVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGS 472 (1210)
Q Consensus 402 ~d~~~erR~l~l~~~~~--ss~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~ 472 (1210)
+..+.+++||.++++.. +.+|..+|.+++.++. .+|+.+|.+|+.+|.
T Consensus 7 ~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr-----------------------~tV~~~L~~Le~~G~ 56 (81)
T 1qbj_A 7 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPK-----------------------KEINRVLYSLAKKGK 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCH-----------------------HHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCH-----------------------HHHHHHHHHHHHCCC
Confidence 34578899999999876 5899999999988732 245677888875663
No 199
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=61.33 E-value=2 Score=42.98 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=46.8
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC--------------CCCCcccccccccc
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP--------------AKNDFNFEKRDWMT 587 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~--------------~kn~f~Fe~~dw~~ 587 (1210)
...++.+|... .+|.+|+|++||.-.|+..|.+. | ..+--.|+=+ -.++..|...|+.+
T Consensus 66 ~~~l~~~~~~~-~~~~~vLD~gcG~G~~~~~la~~----~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 138 (241)
T 3gdh_A 66 AEHIAGRVSQS-FKCDVVVDAFCGVGGNTIQFALT----G--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL 138 (241)
T ss_dssp HHHHHHHHHHH-SCCSEEEETTCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred HHHHHHHhhhc-cCCCEEEECccccCHHHHHHHHc----C--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH
Confidence 34444444332 27999999999999999888653 2 2222233211 11356777778777
Q ss_pred ccCCCCCCCCe-eeeeeCCCccchh
Q 000955 588 VEPKELAPGSR-LIMGLNPPFGVKA 611 (1210)
Q Consensus 588 v~~~elp~G~~-LimgLnPPfg~~a 611 (1210)
..+. ++. +|+ +||||..-.
T Consensus 139 ~~~~----~~~D~v~-~~~~~~~~~ 158 (241)
T 3gdh_A 139 LASF----LKADVVF-LSPPWGGPD 158 (241)
T ss_dssp HGGG----CCCSEEE-ECCCCSSGG
T ss_pred hccc----CCCCEEE-ECCCcCCcc
Confidence 6532 222 444 699998543
No 200
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=60.68 E-value=8.1 Score=45.76 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.2
Q ss_pred CCceeeccccCcccccccCCCC
Q 000955 172 DLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 172 egqLIrCdRCPKAYH~kCLPPp 193 (1210)
+..+|.|+.|..+||..|+.-.
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~ 76 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLE 76 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCC
T ss_pred CCCEEECCCCCcCCCCcCCCCC
Confidence 4579999999999999998764
No 201
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=59.80 E-value=14 Score=40.55 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=54.8
Q ss_pred cEEeccCCcchHHHHHHHHHHhhCCcccc-------------ccccccCCCCCccccccccccccCCCCCCCCeeeeeeC
Q 000955 538 MIVDFCCGANDFSCLMKKKLDETGKNCLY-------------KNYDILPAKNDFNFEKRDWMTVEPKELAPGSRLIMGLN 604 (1210)
Q Consensus 538 ~ivdfccg~n~fs~lmk~kl~~~gk~c~~-------------kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~LimgLn 604 (1210)
+||||+||.--|+.=+.. .|-.|.+ +||.-. . ..|-.++.++++|.=+ ||+| .
T Consensus 13 ~~~dLFaG~Gg~~~g~~~----aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D-~l~~-g 78 (327)
T 2c7p_A 13 RFIDLFAGLGGFRLALES----CGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHD-ILCA-G 78 (327)
T ss_dssp EEEEETCTTTHHHHHHHH----TTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCS-EEEE-E
T ss_pred cEEEECCCcCHHHHHHHH----CCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCC-EEEE-C
Confidence 599999999998876654 4655543 344211 1 4677777788888655 4444 4
Q ss_pred CCc-------------cchhhhHHHHHHhhhccCCcEEEEe
Q 000955 605 PPF-------------GVKAGLANKFINKALEFNPKLLILI 632 (1210)
Q Consensus 605 PPf-------------g~~a~lAnkFi~kal~F~PkliilI 632 (1210)
||+ +-++.|--.|+.-+-..+||++|+=
T Consensus 79 pPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~E 119 (327)
T 2c7p_A 79 FPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFME 119 (327)
T ss_dssp CCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEe
Confidence 764 2245677778887778899988874
No 202
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=59.44 E-value=3.6 Score=38.04 Aligned_cols=35 Identities=20% Similarity=0.507 Sum_probs=30.6
Q ss_pred CCCchHHHHHHHHHHhhhcccchHHHHHhhccCCc
Q 000955 400 PSLDEDSKRRLSSLMKDAASSVRMEEILKRHKIPS 434 (1210)
Q Consensus 400 p~~d~~~erR~l~l~~~~~ss~t~~~v~k~~~~~s 434 (1210)
|....|++.+||.+|+++-+-++-.+|.+++.++.
T Consensus 14 ~~~~~d~eekVLe~LkeaG~PlkageIae~~GvdK 48 (80)
T 2lnb_A 14 PGREGHLEQRILQVLTEAGSPVKLAQLVKECQAPK 48 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCH
T ss_pred CcccchHHHHHHHHHHHcCCCCCHHHHHHHHCCCH
Confidence 33456899999999999999999999999999953
No 203
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=59.37 E-value=18 Score=37.90 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHhhc-ccccCCCcEEeccCCcchHHHHHHHHHH
Q 000955 524 AIVDKLH-WYVNDGDMIVDFCCGANDFSCLMKKKLD 558 (1210)
Q Consensus 524 ~i~~~Lh-~yv~~gd~ivdfccg~n~fs~lmk~kl~ 558 (1210)
.|+..|- ..+++|++|+|+|||.-.|+..|-+.+.
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~ 99 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIE 99 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhC
Confidence 3445553 6789999999999999999988876543
No 204
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=59.13 E-value=5.5 Score=44.18 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=59.0
Q ss_pred cchHHHHHhhccCCccccccccchhhhhhhcccchhHHHHHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHHhhhcccc
Q 000955 420 SVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVY 499 (1210)
Q Consensus 420 s~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~wk~kL~vy 499 (1210)
-.|+.+++|+.--. -+|+-|+.--..|-+|---.+||.||++=+.+++.
T Consensus 13 ~~tlg~~wk~~Ln~-----l~k~~f~~y~~~~i~e~dr~~ar~~l~~~~~~~g~-------------------------- 61 (300)
T 3eld_A 13 GVTLGEVWKRQLNM-----LGKQEFERYKVSDITEVDRTAARRYLKEGRTDVGI-------------------------- 61 (300)
T ss_dssp -CCHHHHHHHHHTT-----SCHHHHHHHHHTTCEEECCHHHHHHHHHTCSSSCC--------------------------
T ss_pred cccHHHHHHHHHHh-----hhHHHHHhhhhhccccccHHHHHHHHHcCCccCCC--------------------------
Confidence 34666666654321 12444555555666565557778887764423221
Q ss_pred cccccccccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 500 LAPFLHGMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 500 laP~l~G~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
|-|= --.||.+|.++ -++.+|.+|||+||+--.|++.+-++
T Consensus 62 ---------yrSR-----aa~KL~ei~ek--~l~~~g~~vlDLGaaPGgWsqva~~~ 102 (300)
T 3eld_A 62 ---------SVSR-----GAAKIRWLHER--GYLRITGRVLDLGCGRGGWSYYAAAQ 102 (300)
T ss_dssp ---------CSST-----THHHHHHHHHH--TSCCCCEEEEEETCTTCHHHHHHHTS
T ss_pred ---------ccch-----HHHHHHHHHHh--CCCCCCCEEEEcCCCCCHHHHHHHHh
Confidence 1111 24689999999 57889999999999999999999653
No 205
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=59.07 E-value=2 Score=39.71 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=17.3
Q ss_pred ceeeccccCcccccccCCCC
Q 000955 174 QFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 174 qLIrCdRCPKAYH~kCLPPp 193 (1210)
+|+.|+.|..|||..|+.-.
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~ 20 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLS 20 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCC
T ss_pred CccccccCCCccCCcccccC
Confidence 38899999999999998643
No 206
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=58.97 E-value=15 Score=38.99 Aligned_cols=82 Identities=16% Similarity=0.282 Sum_probs=58.3
Q ss_pred cEEeccCCcchHHHHHHHHHHhhCCcccc-------------ccccccCCCCCccccccccccccCCCCCCCCeeeeeeC
Q 000955 538 MIVDFCCGANDFSCLMKKKLDETGKNCLY-------------KNYDILPAKNDFNFEKRDWMTVEPKELAPGSRLIMGLN 604 (1210)
Q Consensus 538 ~ivdfccg~n~fs~lmk~kl~~~gk~c~~-------------kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~LimgLn 604 (1210)
.||||.||+--|+.=++ +.|-.|.+ .||. -.+...|=-++.++++|.=+-|+.| =
T Consensus 2 kvidLFsG~GG~~~G~~----~aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~~~~~D~l~gg-p 69 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQ----KAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGG-P 69 (331)
T ss_dssp EEEEESCTTCHHHHHHH----HTTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGGSCCCSEEECC-C
T ss_pred eEEEeCcCccHHHHHHH----HCCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhhCCcccEEEec-C
Confidence 48999999999987654 45766653 2331 1234467778889999987755555 3
Q ss_pred C--Cc----------cchhhhHHHHHHhhhccCCcEEEE
Q 000955 605 P--PF----------GVKAGLANKFINKALEFNPKLLIL 631 (1210)
Q Consensus 605 P--Pf----------g~~a~lAnkFi~kal~F~Pkliil 631 (1210)
| || +-+..|.-.|+.-+-+++||++||
T Consensus 70 PCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ 108 (331)
T 3ubt_Y 70 PSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLA 108 (331)
T ss_dssp CGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEe
Confidence 3 34 335578888888888999999888
No 207
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.52 E-value=3.6 Score=36.93 Aligned_cols=38 Identities=24% Similarity=0.579 Sum_probs=21.9
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCCCCCCccccccccc
Q 000955 91 HQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLL 131 (1210)
Q Consensus 91 HqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~ 131 (1210)
..|.||......+ ..-+..|.=....++||..||..|+
T Consensus 16 ~~C~IC~~~~~~~---~~l~~pC~C~Gs~h~fH~~Cl~~Wl 53 (80)
T 2d8s_A 16 DICRICHCEGDDE---SPLITPCHCTGSLHFVHQACLQQWI 53 (80)
T ss_dssp CCCSSSCCCCCSS---SCEECSSSCCSSSCCEETTHHHHHH
T ss_pred CCCeEcCccccCC---CeeEeccccCCcCCeeCHHHHHHHH
Confidence 4678886543211 1123334211224999999999986
No 208
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=56.93 E-value=5.1 Score=43.18 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=55.7
Q ss_pred HHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC----------CC--CccccccccccccC
Q 000955 523 QAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA----------KN--DFNFEKRDWMTVEP 590 (1210)
Q Consensus 523 ~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~----------kn--~f~Fe~~dw~~v~~ 590 (1210)
+.+++.|.+ .++++|+|+.||.-.++..+.++. ..+.+--.|+=+. .+ ...|...|.++
T Consensus 186 ~~ll~~l~~--~~~~~VLDlGcG~G~~~~~la~~~----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~--- 256 (343)
T 2pjd_A 186 QLLLSTLTP--HTKGKVLDVGCGAGVLSVAFARHS----PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFS--- 256 (343)
T ss_dssp HHHHHHSCT--TCCSBCCBTTCTTSHHHHHHHHHC----TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT---
T ss_pred HHHHHhcCc--CCCCeEEEecCccCHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccc---
Confidence 344555533 357899999999999999886643 2222333332110 01 12343344433
Q ss_pred CCCCCCCeeeeeeCCCccc----hhhhHHHHHHhhhcc-CCcEEEEec
Q 000955 591 KELAPGSRLIMGLNPPFGV----KAGLANKFINKALEF-NPKLLILIV 633 (1210)
Q Consensus 591 ~elp~G~~LimgLnPPfg~----~a~lAnkFi~kal~F-~PkliilI~ 633 (1210)
.+.++.=++-.||||.. ......+|+..+... +|.=.++|+
T Consensus 257 --~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 257 --EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (343)
T ss_dssp --TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 23455444555999963 344567888887654 665444443
No 209
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=56.58 E-value=4.8 Score=44.34 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=51.7
Q ss_pred ccccccc-cc------CcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH--HhhCCccc-------cc
Q 000955 504 LHGMRYT-SF------GRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL--DETGKNCL-------YK 567 (1210)
Q Consensus 504 l~G~ryt-S~------grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl--~~~gk~c~-------~k 567 (1210)
.+|.+|. +. |-+++..+. .+.+.+ + .+|++|+|++||.-.|+..+-++. .-++.+.+ -+
T Consensus 187 ~~g~~f~v~~~~~~~tgff~~~~~~-~~~l~~---~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~ 261 (396)
T 3c0k_A 187 EHGMKLLVDIQHGHKTGYYLDQRDS-RLATRR---Y-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ 261 (396)
T ss_dssp ETTEEEEECTTTSSTTSSCGGGHHH-HHHHHH---H-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred ECCEEEEEeccccccCCcCcCHHHH-HHHHHH---h-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 3577763 32 444444443 333333 3 689999999999999999886531 00111111 12
Q ss_pred cccccCC-CCCccccccccccccCCCCC-CCCeeeeeeCCCcc
Q 000955 568 NYDILPA-KNDFNFEKRDWMTVEPKELA-PGSRLIMGLNPPFG 608 (1210)
Q Consensus 568 n~dl~~~-kn~f~Fe~~dw~~v~~~elp-~G~~LimgLnPPfg 608 (1210)
|..+-.- .++..|...|..++-+.... .+..=++-+|||+.
T Consensus 262 n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~ 304 (396)
T 3c0k_A 262 NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKF 304 (396)
T ss_dssp HHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSST
T ss_pred HHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 2222211 22456777777665332110 12323444599984
No 210
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=56.02 E-value=25 Score=38.30 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=62.7
Q ss_pred cccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHH--hhCCccccccccc-cCC-CCCcccccc
Q 000955 508 RYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLD--ETGKNCLYKNYDI-LPA-KNDFNFEKR 583 (1210)
Q Consensus 508 rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~--~~gk~c~~kn~dl-~~~-kn~f~Fe~~ 583 (1210)
+|.|=|-+ ||+++++.+..-+ +|.+|+|+-||.-.|+..|-+... =+|.+....=.+. +.. ..-..++..
T Consensus 64 ~yvsrg~~-----Kl~~~l~~~~~~~-~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ 137 (291)
T 3hp7_A 64 RYVSRGGL-----KLEKALAVFNLSV-EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQY 137 (291)
T ss_dssp CSSSTTHH-----HHHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSC
T ss_pred ccccchHH-----HHHHHHHhcCCCc-cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceeccc
Confidence 57776654 8889998886533 688999999999999987755311 1222332211111 110 111234444
Q ss_pred ccccccCCCCCCCC-eeeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecC
Q 000955 584 DWMTVEPKELAPGS-RLIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVP 634 (1210)
Q Consensus 584 dw~~v~~~elp~G~-~LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P 634 (1210)
|--.+.+++||..+ -+|.- +--|- .-..+-+=+..+|.=.=+||+||-|
T Consensus 138 ni~~l~~~~l~~~~fD~v~~-d~sf~-sl~~vL~e~~rvLkpGG~lv~lvkP 187 (291)
T 3hp7_A 138 NFRYAEPVDFTEGLPSFASI-DVSFI-SLNLILPALAKILVDGGQVVALVKP 187 (291)
T ss_dssp CGGGCCGGGCTTCCCSEEEE-CCSSS-CGGGTHHHHHHHSCTTCEEEEEECG
T ss_pred CceecchhhCCCCCCCEEEE-EeeHh-hHHHHHHHHHHHcCcCCEEEEEECc
Confidence 54455666677551 13321 22221 0122233355566544467776633
No 211
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=55.00 E-value=6.4 Score=31.34 Aligned_cols=15 Identities=47% Similarity=1.061 Sum_probs=13.4
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..|.
T Consensus 26 ~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 26 RCGHGFHAECVDMWL 40 (55)
T ss_dssp SSCCEECTTHHHHTT
T ss_pred CCCCcccHHHHHHHH
Confidence 599999999999875
No 212
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=54.47 E-value=28 Score=39.30 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.8
Q ss_pred ccCCCcEEeccCCcchHHHHHHHHH
Q 000955 533 VNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 533 v~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
+++|++|+|+|||.-.++..|-+.+
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~ 281 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELM 281 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHT
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHc
Confidence 6789999999999999998886654
No 213
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=54.07 E-value=4.1 Score=37.46 Aligned_cols=32 Identities=28% Similarity=0.755 Sum_probs=25.6
Q ss_pred cccccCCCCCCCCCCCCcccccCCCCCCCCCccccccc
Q 000955 92 QCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSK 129 (1210)
Q Consensus 92 qCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~ 129 (1210)
.|.+|++.+. +--++|....|.+.||..|-..
T Consensus 19 ~C~iC~~~~~------GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 19 TCYLCKQKGV------GASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CBTTTTBCCS------SCEEECSCTTTCCEEEHHHHHH
T ss_pred CCcCCCCCCC------cEeEecCCCCCCCcCcHHHHHH
Confidence 6899976421 2468999999999999999875
No 214
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=53.92 E-value=12 Score=36.58 Aligned_cols=37 Identities=22% Similarity=0.538 Sum_probs=30.9
Q ss_pred hhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 520 DKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 520 ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
+.++.+++.|.-++.++.+|+|+.||.-.++..+.++
T Consensus 23 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~ 59 (227)
T 1ve3_A 23 SRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY 59 (227)
T ss_dssp HHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHc
Confidence 5567777788778888999999999999999888653
No 215
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=53.68 E-value=11 Score=37.65 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=34.0
Q ss_pred CcccccccCC---CCeeccccccCCccccccccCcccccccCCCChhhhhccccccccchhhcc--ccccccCCCC
Q 000955 30 DSVCSFCDNG---GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDEVEAMLNFFCKNCEYKQ--HQCFACGKLG 100 (1210)
Q Consensus 30 DdVCaIC~dG---GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~evqp~~sW~CpnCe~gQ--HqCFVCGqlG 100 (1210)
...|..|+.. ..++... .+.||..|..=.. |.. .|........+..+|..|-... ..|..|++.-
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~~--C~~-~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I 129 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKAL---DRHWHSKCLKCSD--CHV-PLAERCFSRGESVYCKDDFFKRFGTKCAACQLGI 129 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEET---TEEECSSTTSCTT--TCC-CCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCC
T ss_pred CCcCccCCCCccCceeEEec---CCeEccccCccCC--CCC-ccCCCceeECCEeeecCccccccccccccCCCcc
Confidence 4678888773 2344443 3678877654111 311 1111112234677888885443 4677787653
No 216
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=53.63 E-value=53 Score=32.96 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=49.9
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCcccccccccc--------------CCCCCccccccc
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDIL--------------PAKNDFNFEKRD 584 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~--------------~~kn~f~Fe~~d 584 (1210)
...+..++..+. +.+|++|+|+.||.-.++..+-+.+ +..+..--+|+- .-.|...|...|
T Consensus 79 ~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d 153 (255)
T 3mb5_A 79 PKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIV---GPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD 153 (255)
T ss_dssp HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC
T ss_pred HhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHh---CCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence 344556666664 5789999999999999998886643 222333333332 223447788888
Q ss_pred cccccCCCCCCCCeeeeeeCCCcc
Q 000955 585 WMTVEPKELAPGSRLIMGLNPPFG 608 (1210)
Q Consensus 585 w~~v~~~elp~G~~LimgLnPPfg 608 (1210)
+.+. ++.++.=++-+|||-.
T Consensus 154 ~~~~----~~~~~~D~v~~~~~~~ 173 (255)
T 3mb5_A 154 IYEG----IEEENVDHVILDLPQP 173 (255)
T ss_dssp GGGC----CCCCSEEEEEECSSCG
T ss_pred hhhc----cCCCCcCEEEECCCCH
Confidence 7743 4555432333588754
No 217
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=53.56 E-value=11 Score=37.96 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=34.4
Q ss_pred cccccccc----cccccCcccchhhhHHH-HHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 500 LAPFLHGM----RYTSFGRHFTKVDKLQA-IVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 500 laP~l~G~----rytS~grhFTk~ekl~~-i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
++|-.||. .|..+... ..++.. +...|.-.+.+|++|+|++||.-.++..+.+++
T Consensus 20 ~~~~~Y~~~~~~~y~~~~~~---~~~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~ 79 (210)
T 1nt2_A 20 KYGSHYGEKVFDGYREWVPW---RSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV 79 (210)
T ss_dssp SCCCSSSCCEETTEEECCGG---GCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHT
T ss_pred CCccccchhhhhhhhhcChh---HHHHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHc
Confidence 45666776 44433322 123332 233233357899999999999999998886643
No 218
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=52.22 E-value=8.4 Score=37.98 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=25.5
Q ss_pred HHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 523 QAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 523 ~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
.++++.|.-++.++.+|+|+.||.-.++..+.+
T Consensus 21 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~ 53 (243)
T 3d2l_A 21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLAD 53 (243)
T ss_dssp HHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhh
Confidence 345555555678899999999999999887754
No 219
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=50.65 E-value=11 Score=39.52 Aligned_cols=114 Identities=13% Similarity=0.223 Sum_probs=69.9
Q ss_pred ccccCCCcEEeccCCcchHHHHHHHHHH---hhCCccc-------cccccccCCCCCccccccccccccCCCCCCCCeee
Q 000955 531 WYVNDGDMIVDFCCGANDFSCLMKKKLD---ETGKNCL-------YKNYDILPAKNDFNFEKRDWMTVEPKELAPGSRLI 600 (1210)
Q Consensus 531 ~yv~~gd~ivdfccg~n~fs~lmk~kl~---~~gk~c~-------~kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~Li 600 (1210)
-||.+|++|+|++||+--++-.+-+..- -++.+.+ -+|.....-.|...|...|++..-+.+ ..=+-+|
T Consensus 11 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~Iv 89 (225)
T 3kr9_A 11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQVSVIT 89 (225)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCEEE
T ss_pred HhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cCCCEEE
Confidence 4788999999999999999988865321 1222222 234444444567889999998643321 0224466
Q ss_pred eeeCCCccchhhhHHHHHHhhhcc-CCcEEEEecCCccccccc-----cCCCceeeec
Q 000955 601 MGLNPPFGVKAGLANKFINKALEF-NPKLLILIVPPETERLDR-----KESAYELVWE 652 (1210)
Q Consensus 601 mgLnPPfg~~a~lAnkFi~kal~F-~PkliilI~P~~t~rld~-----k~~~Y~liwe 652 (1210)
++ |.-+.+--.|++.+... +|...+++-|- + ..+. ...+|.++-|
T Consensus 90 ia-----G~Gg~~i~~Il~~~~~~L~~~~~lVlq~~-~-~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 90 IA-----GMGGRLIARILEEGLGKLANVERLILQPN-N-REDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp EE-----EECHHHHHHHHHHTGGGCTTCCEEEEEES-S-CHHHHHHHHHHTTEEEEEE
T ss_pred Ec-----CCChHHHHHHHHHHHHHhCCCCEEEEECC-C-CHHHHHHHHHHCCCEEEEE
Confidence 55 56677788999988764 45544445554 2 1221 1357776655
No 220
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=50.63 E-value=19 Score=39.45 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=90.9
Q ss_pred cchHHHHHhhccCCccccccccchhhhhhhcccchhHHHHHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHHhhhcccc
Q 000955 420 SVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVY 499 (1210)
Q Consensus 420 s~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~wk~kL~vy 499 (1210)
-.|+.+++|+.--. -+|.-|..--..|-.|---.+||.||++=+.+|.
T Consensus 11 g~tlG~~wK~~LN~-----l~k~~F~~Yk~~gi~Evdr~~ar~~l~~g~~~g~--------------------------- 58 (267)
T 3p8z_A 11 GETLGEKWKKKLNQ-----LSRKEFDLYKKSGITEVDRTEAKEGLKRGETTHH--------------------------- 58 (267)
T ss_dssp CCCHHHHHHHHHHH-----SCHHHHHHHHTTTCEEEECHHHHHHHHTTCCSSC---------------------------
T ss_pred CCcHHHHHHHHHhh-----cCHHHHHHHhhcCceEeccHHHHHHHhcCCcCCC---------------------------
Confidence 45677777654321 1344455555667777767788888886432211
Q ss_pred cccccccccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCCC----
Q 000955 500 LAPFLHGMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPAK---- 575 (1210)
Q Consensus 500 laP~l~G~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~k---- 575 (1210)
|.| --.+||++|.+|. ++.+|++|||+=|+--.||+..-. ..|-. .-.-|||=.+.
T Consensus 59 ---------yrS-----Ra~~KL~ei~ek~--~l~~g~~VvDLGaapGGWSq~~a~---~~g~~-~V~avdvG~~ghe~P 118 (267)
T 3p8z_A 59 ---------AVS-----RGSAKLQWFVERN--MVIPEGRVIDLGCGRGGWSYYCAG---LKKVT-EVRGYTKGGPGHEEP 118 (267)
T ss_dssp ---------CSS-----THHHHHHHHHHTT--SSCCCEEEEEESCTTSHHHHHHHT---STTEE-EEEEECCCSTTSCCC
T ss_pred ---------ccc-----hHHHHHHHHHHhc--CCCCCCEEEEcCCCCCcHHHHHHH---hcCCC-EEEEEecCCCCccCc
Confidence 111 1357899999997 899999999999999999997743 44555 66789987763
Q ss_pred --------CCcccccc-ccccccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhccC
Q 000955 576 --------NDFNFEKR-DWMTVEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEFN 625 (1210)
Q Consensus 576 --------n~f~Fe~~-dw~~v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F~ 625 (1210)
|-..|-.. |-+.+.+ -+-+-||.=+=| +-.|+.|+++=+++
T Consensus 119 ~~~~s~gwn~v~fk~gvDv~~~~~---~~~DtllcDIge------Ss~~~~vE~~Rtlr 168 (267)
T 3p8z_A 119 VPMSTYGWNIVKLMSGKDVFYLPP---EKCDTLLCDIGE------SSPSPTVEESRTIR 168 (267)
T ss_dssp CCCCCTTTTSEEEECSCCGGGCCC---CCCSEEEECCCC------CCSCHHHHHHHHHH
T ss_pred chhhhcCcCceEEEeccceeecCC---ccccEEEEecCC------CCCChhhhhhHHHH
Confidence 33445444 5444444 235666665545 24455555544443
No 221
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.18 E-value=5.8 Score=35.57 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=26.3
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccc
Q 000955 90 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLL 132 (1210)
Q Consensus 90 QHqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~ 132 (1210)
...|.||...-. .-..|. .|+..||..|+.+|+.
T Consensus 15 i~~C~IC~~~i~-------~g~~C~--~C~h~fH~~Ci~kWl~ 48 (74)
T 2ct0_A 15 VKICNICHSLLI-------QGQSCE--TCGIRMHLPCVAKYFQ 48 (74)
T ss_dssp SCBCSSSCCBCS-------SSEECS--SSCCEECHHHHHHHST
T ss_pred CCcCcchhhHcc-------cCCccC--CCCchhhHHHHHHHHH
Confidence 356888877643 235787 9999999999999874
No 222
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=49.06 E-value=11 Score=42.22 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=73.5
Q ss_pred hcccchHHHHHhhccCCccccccccchhhhhhhcccchhHHHHHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHHhhhc
Q 000955 417 AASSVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKL 496 (1210)
Q Consensus 417 ~~ss~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~wk~kL 496 (1210)
..+-.|+.+++|+.--. -+|..|..--..|-+|---.+||.||++=+.+++.
T Consensus 23 ~~~g~tlG~~wK~~LN~-----l~k~~F~~Yk~~gi~Evdr~~ar~~l~~g~~~~g~----------------------- 74 (321)
T 3lkz_A 23 GAKGRTLGEVWKERLNQ-----MTKEEFTRYRKEAIIEVDRSAAKHARKEGNVTGGH----------------------- 74 (321)
T ss_dssp ---CCSHHHHHHHHHTT-----SCHHHHHHHTTTTCEEECCHHHHHHHHHTCCSSCC-----------------------
T ss_pred CCCCCchHHHHHHHHhc-----cCHHHHHHHhhcCceeechHHHHHHHhcCcCcCCC-----------------------
Confidence 34466778877764332 23444556666777777777889998875534332
Q ss_pred ccccccccccccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC
Q 000955 497 KVYLAPFLHGMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA 574 (1210)
Q Consensus 497 ~vylaP~l~G~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~ 574 (1210)
|.|= -.+||++|.+| +++.+|++|||+=|+--.||+.+ +...|-. .-.-|||=..
T Consensus 75 ------------y~SR-----~~~KL~ei~~~--~~l~~~~~VlDLGaapGGwsq~~---~~~~gv~-~V~avdvG~~ 129 (321)
T 3lkz_A 75 ------------PVSR-----GTAKLRWLVER--RFLEPVGKVIDLGCGRGGWCYYM---ATQKRVQ-EVRGYTKGGP 129 (321)
T ss_dssp ------------CSST-----HHHHHHHHHHT--TSCCCCEEEEEETCTTCHHHHHH---TTCTTEE-EEEEECCCST
T ss_pred ------------ccch-----HHHHHHHHHHh--cCCCCCCEEEEeCCCCCcHHHHH---HhhcCCC-EEEEEEcCCC
Confidence 2221 35799999999 79999999999999999999977 3344555 5668888765
No 223
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=48.93 E-value=47 Score=35.34 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=31.4
Q ss_pred cccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 514 RHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 514 rhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
..|..+.....++..| .+.+|++|+|+.||.-.++..|-+.
T Consensus 86 ~~~~~~~~~~~~l~~l--~~~~g~~VLDiG~G~G~~~~~la~~ 126 (336)
T 2b25_A 86 TAITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLSKA 126 (336)
T ss_dssp SCCCCHHHHHHHHHHH--TCCTTCEEEEECCTTSHHHHHHHHH
T ss_pred CcccCHHHHHHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHH
Confidence 3344555566677777 4789999999999999999988664
No 224
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=48.33 E-value=49 Score=31.94 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=24.5
Q ss_pred HHHHHHhhcc--cccCCCcEEeccCCcchHHHHHHHH
Q 000955 522 LQAIVDKLHW--YVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 522 l~~i~~~Lh~--yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
++.+++.|.. ++ ++.+|+|++||.-.++..+.+.
T Consensus 51 ~~~~~~~l~~~~~~-~~~~vLDiG~G~G~~~~~l~~~ 86 (207)
T 1jsx_A 51 VRHILDSIVVAPYL-QGERFIDVGTGPGLPGIPLSIV 86 (207)
T ss_dssp HHHHHHHHHHGGGC-CSSEEEEETCTTTTTHHHHHHH
T ss_pred HHHHHhhhhhhhhc-CCCeEEEECCCCCHHHHHHHHH
Confidence 3445555432 22 5889999999999999888664
No 225
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=48.18 E-value=9.9 Score=39.91 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=28.0
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
++-|..-+..|+++|.+|+|+.||.-.++..|.+++
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~ 92 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNI 92 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhc
Confidence 333444556689999999999999999998886543
No 226
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=47.79 E-value=26 Score=35.75 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=45.4
Q ss_pred hcccccCCCcEEeccCCcchHHHHHHHHHH---hhCCccccccc----cccCCC------CCccccccccccccCCCCCC
Q 000955 529 LHWYVNDGDMIVDFCCGANDFSCLMKKKLD---ETGKNCLYKNY----DILPAK------NDFNFEKRDWMTVEPKELAP 595 (1210)
Q Consensus 529 Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~---~~gk~c~~kn~----dl~~~k------n~f~Fe~~dw~~v~~~elp~ 595 (1210)
+.++.++|++|+|+.||.-.|...|.++.. -+|.+.+-.+. .....+ .+..|..-|...+ |.++.
T Consensus 18 ~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~- 95 (225)
T 3p2e_A 18 TEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELK- 95 (225)
T ss_dssp HHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGT-
T ss_pred HHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhcc-
Confidence 456678999999999999999988864211 13344432222 111110 1344554454444 22222
Q ss_pred CCeeeeeeCCCccch
Q 000955 596 GSRLIMGLNPPFGVK 610 (1210)
Q Consensus 596 G~~LimgLnPPfg~~ 610 (1210)
+.-..+.+|+|++..
T Consensus 96 d~v~~i~~~~~~~~~ 110 (225)
T 3p2e_A 96 NIADSISILFPWGTL 110 (225)
T ss_dssp TCEEEEEEESCCHHH
T ss_pred CeEEEEEEeCCCcHH
Confidence 555567789998764
No 227
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=47.37 E-value=14 Score=34.67 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=32.6
Q ss_pred ccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 515 HFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 515 hFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
.+|+.+-...++++|. +.+|++|+|+.||.-.++..+-++
T Consensus 7 ~~t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~ 46 (178)
T 3hm2_A 7 QLTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRS 46 (178)
T ss_dssp CSHHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHH
Confidence 4677777788888885 578999999999999998877543
No 228
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=46.86 E-value=4.7 Score=46.64 Aligned_cols=30 Identities=17% Similarity=0.495 Sum_probs=23.7
Q ss_pred ccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 161 ICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 161 vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
.|++..+. .+.|++|+.|..+||..|+.-.
T Consensus 9 iC~~~~d~---~~~MIqCD~C~~WfH~~CVgi~ 38 (447)
T 3kv4_A 9 LCRLPYDV---TRFMIECDMCQDWFHGSCVGVE 38 (447)
T ss_dssp TTTEECCT---TSCEEECTTTCCEEEHHHHTCC
T ss_pred eCCCcCCC---CCCeEEcCCCCcccccccCCcC
Confidence 77776532 3469999999999999998653
No 229
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=46.55 E-value=69 Score=32.33 Aligned_cols=49 Identities=24% Similarity=0.498 Sum_probs=34.6
Q ss_pred hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccc
Q 000955 518 KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDI 571 (1210)
Q Consensus 518 k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl 571 (1210)
...++..++++|. +.+|++|+|+.||.-.|+..|.+++ |..+.+--.|+
T Consensus 28 ~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~---g~~~~v~gvD~ 76 (275)
T 3bkx_A 28 QTAHRLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQV---GSSGHVTGIDI 76 (275)
T ss_dssp HHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHH---CTTCEEEEECS
T ss_pred HHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEEEC
Confidence 3455666777664 6899999999999999999987654 33344444444
No 230
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=46.43 E-value=5.7 Score=43.32 Aligned_cols=22 Identities=5% Similarity=-0.088 Sum_probs=19.3
Q ss_pred cCCCcEEeccCCcchHHHHHHH
Q 000955 534 NDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 534 ~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
.+|.+|+|++||.-.|+..+.+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~ 173 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAA 173 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHH
T ss_pred CCCCcEEEcccccCHHHHHHHH
Confidence 4788999999999999988755
No 231
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=46.09 E-value=24 Score=44.35 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=26.8
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
...++.+++.|.- .+|.+|+|+.||.-.|+..|.+.
T Consensus 707 eqRle~LLelL~~--~~g~rVLDVGCGTG~lai~LAr~ 742 (950)
T 3htx_A 707 KQRVEYALKHIRE--SSASTLVDFGCGSGSLLDSLLDY 742 (950)
T ss_dssp HHHHHHHHHHHHH--SCCSEEEEETCSSSHHHHHHTSS
T ss_pred HHHHHHHHHHhcc--cCCCEEEEECCCCCHHHHHHHHh
Confidence 3455556665543 38999999999999999888553
No 232
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=45.89 E-value=16 Score=40.10 Aligned_cols=111 Identities=16% Similarity=0.266 Sum_probs=66.1
Q ss_pred cEEeccCCcchHHHHHHHHHHhhCC--cccc--------------ccccccCCCCCccccccccccccCCCCCCC-Ceee
Q 000955 538 MIVDFCCGANDFSCLMKKKLDETGK--NCLY--------------KNYDILPAKNDFNFEKRDWMTVEPKELAPG-SRLI 600 (1210)
Q Consensus 538 ~ivdfccg~n~fs~lmk~kl~~~gk--~c~~--------------kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G-~~Li 600 (1210)
+||||+||.--|+.=++ +.|. .|.| .||. +. +-..|--++.+++|+.+ --||
T Consensus 12 ~vidLFaG~GG~~~G~~----~aG~~~~~v~~a~e~d~~a~~ty~~N~~-----~~--~~~~DI~~~~~~~i~~~~~Dil 80 (327)
T 3qv2_A 12 NVIEFFSGIGGLRSSYE----RSSININATFIPFDINEIANKIYSKNFK-----EE--VQVKNLDSISIKQIESLNCNTW 80 (327)
T ss_dssp EEEEETCTTTHHHHHHH----HSSCCCCEEEEEECCCHHHHHHHHHHHC-----CC--CBCCCTTTCCHHHHHHTCCCEE
T ss_pred EEEEECCChhHHHHHHH----HcCCCceEEEEEEECCHHHHHHHHHHCC-----CC--cccCChhhcCHHHhccCCCCEE
Confidence 59999999999987664 4564 5541 2331 11 33466667777777742 2355
Q ss_pred eeeCCC---c-----c-------chhhhHHHHHH-hhhcc--CCcEEEEe-cCCccc---------cccccCCCceeeec
Q 000955 601 MGLNPP---F-----G-------VKAGLANKFIN-KALEF--NPKLLILI-VPPETE---------RLDRKESAYELVWE 652 (1210)
Q Consensus 601 mgLnPP---f-----g-------~~a~lAnkFi~-kal~F--~PkliilI-~P~~t~---------rld~k~~~Y~liwe 652 (1210)
+| -|| | | -++.|.-.|+. -+-.. +||++||= ||-... .|. .-+|.+-|.
T Consensus 81 ~g-gpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~--~~GY~v~~~ 157 (327)
T 3qv2_A 81 FM-SPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILI--KNQYYIKDI 157 (327)
T ss_dssp EE-CCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHH--HTTCEEEEE
T ss_pred Ee-cCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHH--hCCCEEEEE
Confidence 55 576 9 2 34567778887 44444 89998884 333221 121 347887764
Q ss_pred cccccCCcceecC
Q 000955 653 DDQFLSGKSFYLP 665 (1210)
Q Consensus 653 d~~~l~gksFYlP 665 (1210)
+|...-|-+|
T Consensus 158 ---vl~a~~yGvP 167 (327)
T 3qv2_A 158 ---ICSPIDIGIP 167 (327)
T ss_dssp ---EECGGGGTCS
T ss_pred ---EEeHHHcCCC
Confidence 4555555444
No 233
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=45.21 E-value=8.9 Score=39.78 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=22.1
Q ss_pred ccCCCccCCCCCCceeeccccCcccccccCCCC
Q 000955 161 ICKQGENKADSDLQFAVCRRCPKAYHRKCLPRK 193 (1210)
Q Consensus 161 vCkkseDkn~~egqLIrCdRCPKAYH~kCLPPp 193 (1210)
-|+..++- ...+++|.+|-++||..|+...
T Consensus 9 YCG~~~~~---~~~mLqC~~C~qWFH~~Cl~~~ 38 (177)
T 3rsn_A 9 DEENGRQL---GEVELQCGICTKWFTADTFGID 38 (177)
T ss_dssp --CTTCCT---TSCEEECTTTCCEEEGGGGTCC
T ss_pred EcCCCCCC---CceeEeeccccceecHHHhccc
Confidence 36665543 3579999999999999999743
No 234
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=45.13 E-value=47 Score=33.82 Aligned_cols=102 Identities=12% Similarity=0.185 Sum_probs=53.9
Q ss_pred hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCcccccccccc-------CCCCCccccccccccccCCCC
Q 000955 521 KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDIL-------PAKNDFNFEKRDWMTVEPKEL 593 (1210)
Q Consensus 521 kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~-------~~kn~f~Fe~~dw~~v~~~el 593 (1210)
-++.+++.|. +.++.+|+|+.||.-.|...|.+. + +.+--.|+= ..+.+..|...|+.... +
T Consensus 22 ~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~---~ 90 (261)
T 3ege_A 22 IVNAIINLLN--LPKGSVIADIGAGTGGYSVALANQ----G--LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA---L 90 (261)
T ss_dssp HHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHTT----T--CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCC---S
T ss_pred HHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHhC----C--CEEEEEeCCHHHHHHHHhccCCEEEECchhhCC---C
Confidence 4455555555 478999999999999999988641 1 222223321 12225666666664432 3
Q ss_pred CCCC-eeeeeeCCCccchh--hhHHHHHHhhhccCCcEEEEecCC
Q 000955 594 APGS-RLIMGLNPPFGVKA--GLANKFINKALEFNPKLLILIVPP 635 (1210)
Q Consensus 594 p~G~-~LimgLnPPfg~~a--~lAnkFi~kal~F~PkliilI~P~ 635 (1210)
+.++ -+|+-.+. +..-. .-+-+=+..+|. .=.|+|+..++
T Consensus 91 ~~~~fD~v~~~~~-l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 91 PDKSVDGVISILA-IHHFSHLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp CTTCBSEEEEESC-GGGCSSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred CCCCEeEEEEcch-HhhccCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 3343 24443232 21111 112233456777 65566665544
No 235
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=45.00 E-value=14 Score=32.98 Aligned_cols=67 Identities=21% Similarity=0.363 Sum_probs=39.1
Q ss_pred ccCcccccccCC----CCeeccccccCCccccccccCcccccccCCCChhh-hhccccccccchhhcc--ccccccCCCC
Q 000955 28 LFDSVCSFCDNG----GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDE-VEAMLNFFCKNCEYKQ--HQCFACGKLG 100 (1210)
Q Consensus 28 lnDdVCaIC~dG----GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~e-vqp~~sW~CpnCe~gQ--HqCFVCGqlG 100 (1210)
+....|..|+.. +..+.-.| +.||..|..=.. |.. .|.... ....+..+|..|-.+. ..|..|++.-
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~---~~~H~~CF~C~~--C~~-~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I 76 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKN---RFWHDTCFRCAK--CLH-PLANETFVAKDNKILCNKCTTREDSPKCKGCFKAI 76 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETT---EEEETTTCCCSS--SCC-CTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBC
T ss_pred CCCCcCcccCCcccCCceEEEECc---cChhhcCCcccc--cCC-CCCcCeeECcCCEEEChhHhhhhcCCccccCCCcc
Confidence 346789999983 45555544 689988754111 311 111111 1234678898885543 5788887764
No 236
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=44.46 E-value=72 Score=34.17 Aligned_cols=96 Identities=13% Similarity=0.191 Sum_probs=57.3
Q ss_pred hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC--------------CCCccccccccc
Q 000955 521 KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA--------------KNDFNFEKRDWM 586 (1210)
Q Consensus 521 kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~--------------kn~f~Fe~~dw~ 586 (1210)
.+..+++.+- ..++.+|||+.||.-.++..+.++. ..+.+-.+|+ +. .+...|...|..
T Consensus 178 ~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 250 (359)
T 1x19_A 178 AIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF----PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY 250 (359)
T ss_dssp HHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHC----TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred hHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHC----CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccc
Confidence 3456666665 3688999999999999999887653 2345556666 32 234777777777
Q ss_pred cccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhcc-CCc
Q 000955 587 TVEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEF-NPK 627 (1210)
Q Consensus 587 ~v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F-~Pk 627 (1210)
+. .++.++-+|+. +.-..+.-.-..+++.++... +|.
T Consensus 251 ~~---~~~~~D~v~~~-~vlh~~~d~~~~~~l~~~~~~L~pg 288 (359)
T 1x19_A 251 KE---SYPEADAVLFC-RILYSANEQLSTIMCKKAFDAMRSG 288 (359)
T ss_dssp TS---CCCCCSEEEEE-SCGGGSCHHHHHHHHHHHHTTCCTT
T ss_pred cC---CCCCCCEEEEe-chhccCCHHHHHHHHHHHHHhcCCC
Confidence 65 34556644443 432222222344555554432 454
No 237
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=44.03 E-value=46 Score=34.34 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=32.9
Q ss_pred ccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 507 MRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 507 ~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
.+|.|=|.. ||+++++.+-. -..|.+|+|+.||.-.|+..|.++
T Consensus 15 ~~yvsrg~~-----kL~~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~ 58 (232)
T 3opn_A 15 LRYVSRGGL-----KLEKALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN 58 (232)
T ss_dssp CCSSSTTHH-----HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT
T ss_pred CCccCCcHH-----HHHHHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc
Confidence 367776654 77788887643 235679999999999999888654
No 238
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=43.97 E-value=26 Score=34.82 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=32.7
Q ss_pred ccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 515 HFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 515 hFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
.+|+.+....++.+|. +.+|++|+|+.||.-.++..+-+.
T Consensus 37 ~~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~ 76 (204)
T 3njr_A 37 QITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLA 76 (204)
T ss_dssp CCCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT
T ss_pred CCCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc
Confidence 6777777777888876 578999999999999998877553
No 239
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=43.84 E-value=52 Score=33.88 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=55.1
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC--------------CCCCcccccccccc
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP--------------AKNDFNFEKRDWMT 587 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~--------------~kn~f~Fe~~dw~~ 587 (1210)
+..++..+ -+.+|++|||++||.-.++..+-+.+ +..+.+--+|+-+ -.+...|...|+.+
T Consensus 101 ~~~i~~~~--~~~~~~~VLDiG~G~G~~~~~la~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 175 (277)
T 1o54_A 101 SSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAV---GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 175 (277)
T ss_dssp HHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHT---TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred HHHHHHHh--CCCCCCEEEEECCcCCHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 34556555 36789999999999999988885542 3233333333311 11346677777765
Q ss_pred ccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhccCCc-EEEEecCC
Q 000955 588 VEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEFNPK-LLILIVPP 635 (1210)
Q Consensus 588 v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F~Pk-liilI~P~ 635 (1210)
. ++.++.=++-+|||.... +-+-+.++| +|. .|++++|.
T Consensus 176 ~----~~~~~~D~V~~~~~~~~~---~l~~~~~~L--~pgG~l~~~~~~ 215 (277)
T 1o54_A 176 G----FDEKDVDALFLDVPDPWN---YIDKCWEAL--KGGGRFATVCPT 215 (277)
T ss_dssp C----CSCCSEEEEEECCSCGGG---THHHHHHHE--EEEEEEEEEESS
T ss_pred c----ccCCccCEEEECCcCHHH---HHHHHHHHc--CCCCEEEEEeCC
Confidence 4 444433233358886421 112223444 343 45555664
No 240
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=43.66 E-value=15 Score=34.94 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.0
Q ss_pred hcccccCCCcEEeccCCcchHHHHHHH
Q 000955 529 LHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 529 Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
|.-++.+|++|+|+.||.-.++..|.+
T Consensus 16 l~~~~~~~~~vLDiGcG~G~~~~~la~ 42 (185)
T 3mti_A 16 LAEVLDDESIVVDATMGNGNDTAFLAG 42 (185)
T ss_dssp HHTTCCTTCEEEESCCTTSHHHHHHHT
T ss_pred HHHhCCCCCEEEEEcCCCCHHHHHHHH
Confidence 445788999999999999999988754
No 241
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=43.62 E-value=19 Score=39.68 Aligned_cols=128 Identities=14% Similarity=0.206 Sum_probs=77.4
Q ss_pred Ccccchhh---hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC------------CCC
Q 000955 513 GRHFTKVD---KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA------------KND 577 (1210)
Q Consensus 513 grhFTk~e---kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~------------kn~ 577 (1210)
|.|.+..| .|.++++.+-+.+.+-.+|+|+=||.|=|+-.+-. ......|--|||=+. .-.
T Consensus 107 ~~H~STreRLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~----~~p~a~y~a~DId~~~le~a~~~l~~~g~~ 182 (281)
T 3lcv_B 107 SVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMG----LPAETVYIASDIDARLVGFVDEALTRLNVP 182 (281)
T ss_dssp TTSHHHHHHGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTT----CCTTCEEEEEESBHHHHHHHHHHHHHTTCC
T ss_pred hcCCCHHHHhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHh----hCCCCEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 57888877 67788888888888889999999999999866522 123344544444221 122
Q ss_pred ccccccccccccCCCCCCCCeeeeeeCCCcc---chhhhHHHHHHhhhccCCcEEEEecCC-----ccccccccCCCcee
Q 000955 578 FNFEKRDWMTVEPKELAPGSRLIMGLNPPFG---VKAGLANKFINKALEFNPKLLILIVPP-----ETERLDRKESAYEL 649 (1210)
Q Consensus 578 f~Fe~~dw~~v~~~elp~G~~LimgLnPPfg---~~a~lAnkFi~kal~F~PkliilI~P~-----~t~rld~k~~~Y~l 649 (1210)
+.|+-.|-++--|. ..++-.++.+--|.= -++++. ++++ ..+|..|++..|. -+..|+. .|.-
T Consensus 183 ~~~~v~D~~~~~p~--~~~DvaL~lkti~~Le~q~kg~g~-~ll~---aL~~~~vvVSfp~ksl~Grs~gm~~---~Y~~ 253 (281)
T 3lcv_B 183 HRTNVADLLEDRLD--EPADVTLLLKTLPCLETQQRGSGW-EVID---IVNSPNIVVTFPTKSLGQRSKGMFQ---NYSQ 253 (281)
T ss_dssp EEEEECCTTTSCCC--SCCSEEEETTCHHHHHHHSTTHHH-HHHH---HSSCSEEEEEEECC-------CHHH---HHHH
T ss_pred ceEEEeeecccCCC--CCcchHHHHHHHHHhhhhhhHHHH-HHHH---HhCCCCEEEeccchhhcCCCcchhh---HHHH
Confidence 56665555544433 234433344333331 233444 5554 5789999999998 4444444 6766
Q ss_pred eecc
Q 000955 650 VWED 653 (1210)
Q Consensus 650 iwed 653 (1210)
.||.
T Consensus 254 ~~e~ 257 (281)
T 3lcv_B 254 SFES 257 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 242
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=42.75 E-value=39 Score=35.39 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=58.2
Q ss_pred hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCcccccccccc-------------CCCCCcccccccccc
Q 000955 521 KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDIL-------------PAKNDFNFEKRDWMT 587 (1210)
Q Consensus 521 kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~-------------~~kn~f~Fe~~dw~~ 587 (1210)
.+.++++++-|...++.+|||+.||.-.++..+.+++. .+.+-.+|+= .-.+...|...|+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNP----NAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCT----TCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCC----CCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 34577777766457889999999999999988876542 1233333321 012456777777765
Q ss_pred ccCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhc-cCCc
Q 000955 588 VEPKELAPGSRLIMGLNPPFGVKAGLANKFINKALE-FNPK 627 (1210)
Q Consensus 588 v~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~-F~Pk 627 (1210)
. .+|.+=-+|+--|....+...-..+++.++.. .+|.
T Consensus 227 ~---~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg 264 (335)
T 2r3s_A 227 V---DYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVE 264 (335)
T ss_dssp S---CCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred C---CCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCC
Confidence 4 34555446665566554433333455555443 2454
No 243
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=42.41 E-value=12 Score=40.62 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.5
Q ss_pred cccCCCcEEeccCCcchHHHH
Q 000955 532 YVNDGDMIVDFCCGANDFSCL 552 (1210)
Q Consensus 532 yv~~gd~ivdfccg~n~fs~l 552 (1210)
++.+|++|+|++||.-.|+..
T Consensus 192 ~~~~~~~VLDlg~G~G~~~l~ 212 (336)
T 2yx1_A 192 KVSLNDVVVDMFAGVGPFSIA 212 (336)
T ss_dssp HCCTTCEEEETTCTTSHHHHH
T ss_pred hcCCCCEEEEccCccCHHHHh
Confidence 457899999999999999876
No 244
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=41.78 E-value=24 Score=35.17 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=28.9
Q ss_pred hhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 520 DKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 520 ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
+.+.+...++..++.+|.+|+|+.||.-.|+..|.++
T Consensus 26 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~ 62 (240)
T 3dli_A 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE 62 (240)
T ss_dssp HHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC
Confidence 3455555555667789999999999999999888764
No 245
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=41.55 E-value=11 Score=42.14 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=30.8
Q ss_pred CcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 513 GRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 513 grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
|..+..-+.-.-++..|. +++|++|+|+|||.-.++..|-+.+
T Consensus 226 G~~~~qd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~ 268 (429)
T 1sqg_A 226 GWVTVQDASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVA 268 (429)
T ss_dssp TSEEECCHHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHC
T ss_pred CCeEeeCHHHHHHHHHcC--CCCcCeEEEECCCchHHHHHHHHHc
Confidence 444444444445555565 4899999999999999998887654
No 246
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=41.06 E-value=22 Score=33.23 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=31.5
Q ss_pred cchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 516 FTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 516 FTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
+|..+-...+++++. +.++++|+|+.||.-.++..+.+.
T Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~ 54 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGR 54 (192)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTT
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHh
Confidence 677777777788775 578999999999999988877543
No 247
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=40.45 E-value=90 Score=31.73 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=28.6
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
..-+..|+..|. +.+|++|+|+.||.-.|+..+-+.+
T Consensus 85 ~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 121 (280)
T 1i9g_A 85 PKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAV 121 (280)
T ss_dssp HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHh
Confidence 334556777664 6899999999999999998886643
No 248
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=40.40 E-value=9.6 Score=40.51 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=27.2
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCCCCCccccccccc
Q 000955 90 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLL 131 (1210)
Q Consensus 90 QHqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~ 131 (1210)
...|.+|...-. .-.+|. .|+..||..|+..+.
T Consensus 180 i~~C~iC~~iv~-------~g~~C~--~C~~~~H~~C~~~~~ 212 (238)
T 3nw0_A 180 VKICNICHSLLI-------QGQSCE--TCGIRMHLPCVAKYF 212 (238)
T ss_dssp CCBCTTTCSBCS-------SCEECS--SSCCEECHHHHHHHT
T ss_pred CCcCcchhhHHh-------CCcccC--ccChHHHHHHHHHHH
Confidence 568999998764 247898 699999999999875
No 249
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=40.32 E-value=17 Score=35.77 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.7
Q ss_pred ccCCCcEEeccCCcchHHHHHHHH
Q 000955 533 VNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 533 v~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
-.++++|||++||.-.|+..|.++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~la~~ 62 (214)
T 1yzh_A 39 GNDNPIHVEVGSGKGAFVSGMAKQ 62 (214)
T ss_dssp TSCCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCCCeEEEEccCcCHHHHHHHHH
Confidence 367999999999999999888664
No 250
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=39.64 E-value=23 Score=34.44 Aligned_cols=101 Identities=10% Similarity=0.004 Sum_probs=54.6
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHH--hhCCcccc-------ccccccCCCCCccccccccccccCCC
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLD--ETGKNCLY-------KNYDILPAKNDFNFEKRDWMTVEPKE 592 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~--~~gk~c~~-------kn~dl~~~kn~f~Fe~~dw~~v~~~e 592 (1210)
...+.+.|.-++.+|++|+|+.||.-.|+..|.+... -+|.+..- +|+....-.| ..|...|+...
T Consensus 47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~---- 121 (205)
T 3grz_A 47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLAD---- 121 (205)
T ss_dssp HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTT----
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEecccccc----
Confidence 3445555666678999999999999999888765210 01111111 1111111122 67777777553
Q ss_pred CCCCCeeeeeeCCCccchhhhHHHHHHhhhc-cCCcEEEEe
Q 000955 593 LAPGSRLIMGLNPPFGVKAGLANKFINKALE-FNPKLLILI 632 (1210)
Q Consensus 593 lp~G~~LimgLnPPfg~~a~lAnkFi~kal~-F~PkliilI 632 (1210)
+.++.=++-.|+|+.. ..+|+..+.. .+|.=+++|
T Consensus 122 -~~~~fD~i~~~~~~~~----~~~~l~~~~~~L~~gG~l~~ 157 (205)
T 3grz_A 122 -VDGKFDLIVANILAEI----LLDLIPQLDSHLNEDGQVIF 157 (205)
T ss_dssp -CCSCEEEEEEESCHHH----HHHHGGGSGGGEEEEEEEEE
T ss_pred -CCCCceEEEECCcHHH----HHHHHHHHHHhcCCCCEEEE
Confidence 2234333445777753 3566666554 355433333
No 251
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=39.22 E-value=69 Score=33.09 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=22.6
Q ss_pred HHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 525 IVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 525 i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
+++.| .+.+|++|+|++||.-.++..+.+.+
T Consensus 102 ~~~~~--~~~~~~~VLD~G~G~G~~~~~la~~~ 132 (275)
T 1yb2_A 102 IIMRC--GLRPGMDILEVGVGSGNMSSYILYAL 132 (275)
T ss_dssp ----C--CCCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHc--CCCCcCEEEEecCCCCHHHHHHHHHc
Confidence 44444 36789999999999999998887653
No 252
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=38.78 E-value=14 Score=40.72 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=24.4
Q ss_pred HhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 527 DKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 527 ~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
..|-+++++|++|+|++||.-.|+..+-++
T Consensus 209 ~~~~~~~~~~~~VLDl~~G~G~~~~~la~~ 238 (396)
T 2as0_A 209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIA 238 (396)
T ss_dssp HHHGGGCCTTCEEEETTCTTTHHHHHHHHT
T ss_pred HHHHHHhhCCCeEEEecCCCCHHHHHHHHC
Confidence 334466779999999999999999988653
No 253
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=38.61 E-value=32 Score=29.42 Aligned_cols=29 Identities=14% Similarity=0.476 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhcccchHHHHHhhccCC
Q 000955 405 DSKRRLSSLMKDAASSVRMEEILKRHKIP 433 (1210)
Q Consensus 405 ~~erR~l~l~~~~~ss~t~~~v~k~~~~~ 433 (1210)
+++++||.++++....++..+|.+.+.++
T Consensus 10 ~~~~~IL~~L~~~~~~~s~~eLA~~lgls 38 (67)
T 2heo_A 10 NLEQKILQVLSDDGGPVAIFQLVKKCQVP 38 (67)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcC
Confidence 56778999998866679999999999884
No 254
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=38.39 E-value=25 Score=37.34 Aligned_cols=42 Identities=7% Similarity=0.186 Sum_probs=34.6
Q ss_pred cccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 514 RHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 514 rhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
...+...++..+++.|. +++|++|+|+.||.-.|+..|-++.
T Consensus 56 q~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~ 97 (317)
T 1dl5_A 56 STSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVV 97 (317)
T ss_dssp EEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhc
Confidence 45556688888888885 6799999999999999998887654
No 255
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=38.30 E-value=23 Score=32.70 Aligned_cols=44 Identities=7% Similarity=0.071 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhhhcccchHHHHHhhccCCccccccccchhhhhhhcccchhHHHHHHHHHHhcccCCC
Q 000955 404 EDSKRRLSSLMKDAASSVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGS 472 (1210)
Q Consensus 404 ~~~erR~l~l~~~~~ss~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~ 472 (1210)
+++.++||.++++.. +|..+|.+++.+ +..|||.-|.+||.+|-
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~Lgi-----------------------Sk~aVr~~L~~Le~eG~ 59 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNM-----------------------EKREVNKALYDLQRSAM 59 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSS-----------------------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCc-----------------------CHHHHHHHHHHHHHCCC
Confidence 378899999999644 999999988876 34678888888875663
No 256
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=37.98 E-value=9.4 Score=30.28 Aligned_cols=15 Identities=40% Similarity=1.101 Sum_probs=13.4
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..+.
T Consensus 26 ~CgH~fc~~Ci~~~~ 40 (55)
T 2ecm_A 26 PCGHLLHRTCYEEML 40 (55)
T ss_dssp TTSCEEETTHHHHHH
T ss_pred CCCCcccHHHHHHHH
Confidence 699999999999875
No 257
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=37.81 E-value=24 Score=37.60 Aligned_cols=101 Identities=12% Similarity=0.213 Sum_probs=65.2
Q ss_pred hcccccCCCcEEeccCCcchHHHHHHHHHH---hhCCccc-------cccccccCCCCCccccccccccccCCCCCCCCe
Q 000955 529 LHWYVNDGDMIVDFCCGANDFSCLMKKKLD---ETGKNCL-------YKNYDILPAKNDFNFEKRDWMTVEPKELAPGSR 598 (1210)
Q Consensus 529 Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~---~~gk~c~-------~kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~ 598 (1210)
+--||.+|++|+|++||+--++..+.+... -++.+.+ -+|.....-.|...|...|++..-+.+ ..=+-
T Consensus 15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~-~~~D~ 93 (244)
T 3gnl_A 15 VASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKK-DAIDT 93 (244)
T ss_dssp HHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCE
T ss_pred HHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCcc-ccccE
Confidence 345889999999999999999998866321 1223332 234444444566788888888754321 01245
Q ss_pred eeeeeCCCccchhhhHHHHHHhhhcc-CCcEEEEecCC
Q 000955 599 LIMGLNPPFGVKAGLANKFINKALEF-NPKLLILIVPP 635 (1210)
Q Consensus 599 LimgLnPPfg~~a~lAnkFi~kal~F-~PkliilI~P~ 635 (1210)
+|++ |.-+.+--.|++.+..+ +|...+++.|-
T Consensus 94 Ivia-----gmGg~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 94 IVIA-----GMGGTLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp EEEE-----EECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred EEEe-----CCchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 5665 67788889999988764 45455555553
No 258
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=37.47 E-value=23 Score=38.95 Aligned_cols=85 Identities=16% Similarity=0.314 Sum_probs=54.4
Q ss_pred cEEeccCCcchHHHHHHHHHHhhCC--cccc-------------ccccccCCCCCccccccccccccCCCCCCC-Ceeee
Q 000955 538 MIVDFCCGANDFSCLMKKKLDETGK--NCLY-------------KNYDILPAKNDFNFEKRDWMTVEPKELAPG-SRLIM 601 (1210)
Q Consensus 538 ~ivdfccg~n~fs~lmk~kl~~~gk--~c~~-------------kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G-~~Lim 601 (1210)
+||||+||.--|+.=+++ .|. .|.+ .||. .-.+-..|+-++.+++++.+ --||+
T Consensus 5 ~~idLFaG~GG~~~G~~~----aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~ 74 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKE----SGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTIL 74 (333)
T ss_dssp EEEEETCTTTHHHHHHHH----HTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred EEEEECcCccHHHHHHHH----cCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEE
Confidence 589999999999876654 454 4432 2442 11244578888888888742 23455
Q ss_pred eeCC--Cccc----------hhhhHHHHHHhhhccC-CcEEEEe
Q 000955 602 GLNP--PFGV----------KAGLANKFINKALEFN-PKLLILI 632 (1210)
Q Consensus 602 gLnP--Pfg~----------~a~lAnkFi~kal~F~-PkliilI 632 (1210)
|==| ||-. ++.|...|+.-+-..+ ||++||=
T Consensus 75 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlE 118 (333)
T 4h0n_A 75 MSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILME 118 (333)
T ss_dssp ECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEE
T ss_pred ecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEe
Confidence 4233 4632 4567777887777776 9988874
No 259
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.66 E-value=13 Score=31.73 Aligned_cols=43 Identities=23% Similarity=0.623 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccchHHHHHHHHHhhccCCceecCCcc
Q 000955 92 QCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAKSIIAGESFTCPLHK 158 (1210)
Q Consensus 92 qCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLekkIaaGksFrCPlH~ 158 (1210)
.|.||...-.. ...+.-. .|++.||..|+..|+ .....||.|.
T Consensus 17 ~C~IC~~~~~~-----~~~~~~~--~C~H~fc~~Ci~~~~-----------------~~~~~CP~Cr 59 (78)
T 2ect_A 17 ECPVCKEDYAL-----GESVRQL--PCNHLFHDSCIVPWL-----------------EQHDSCPVCR 59 (78)
T ss_dssp CCTTTTSCCCT-----TSCEEEC--TTSCEEETTTTHHHH-----------------TTTCSCTTTC
T ss_pred CCeeCCccccC-----CCCEEEe--CCCCeecHHHHHHHH-----------------HcCCcCcCcC
No 260
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=36.35 E-value=7.2 Score=36.71 Aligned_cols=15 Identities=47% Similarity=1.147 Sum_probs=13.8
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..||..++
T Consensus 72 ~C~H~FH~~Ci~~Wl 86 (106)
T 3dpl_R 72 VCNHAFHFHCISRWL 86 (106)
T ss_dssp TTSCEEEHHHHHHHH
T ss_pred ccCcEECHHHHHHHH
Confidence 699999999999886
No 261
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=36.23 E-value=24 Score=38.60 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=50.8
Q ss_pred ccCCCcEEeccCCcchHHHHHHHHHHhhCCcccccccccc-------CC--------------CCCccccccccccccCC
Q 000955 533 VNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDIL-------PA--------------KNDFNFEKRDWMTVEPK 591 (1210)
Q Consensus 533 v~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~-------~~--------------kn~f~Fe~~dw~~v~~~ 591 (1210)
+.+|.+|||+.||.-.+...|.+.+ +....+--.|+- +. ..+..|...|+..+...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~ 157 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLV---GEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA 157 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHH---TTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc
Confidence 6789999999999999999887654 222233233331 11 13567777777665322
Q ss_pred ---CCCCCCeeeeeeCCCccchhhhHHHHHHhhhc-cCCc
Q 000955 592 ---ELAPGSRLIMGLNPPFGVKAGLANKFINKALE-FNPK 627 (1210)
Q Consensus 592 ---elp~G~~LimgLnPPfg~~a~lAnkFi~kal~-F~Pk 627 (1210)
.++.++.=++-.|..|..-... .+++..+.. .+|.
T Consensus 158 ~~~~~~~~~fD~V~~~~~l~~~~d~-~~~l~~~~r~Lkpg 196 (383)
T 4fsd_A 158 EPEGVPDSSVDIVISNCVCNLSTNK-LALFKEIHRVLRDG 196 (383)
T ss_dssp BSCCCCTTCEEEEEEESCGGGCSCH-HHHHHHHHHHEEEE
T ss_pred ccCCCCCCCEEEEEEccchhcCCCH-HHHHHHHHHHcCCC
Confidence 5566654344345555432222 244444432 2554
No 262
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=35.54 E-value=26 Score=38.10 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=30.8
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
+-.++++++.|- +++|.+|||++||.-.++..|-+++
T Consensus 12 pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~ 48 (301)
T 1m6y_A 12 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC 48 (301)
T ss_dssp CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC
T ss_pred HHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHC
Confidence 345788888886 4789999999999999999987654
No 263
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=35.51 E-value=16 Score=36.06 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=36.6
Q ss_pred CcccccccCC---CCeeccccccCCccccccccCccccccc-CCCChhhhhccccccccchhhcc--ccccccCCCC
Q 000955 30 DSVCSFCDNG---GDLLCCEGRCLRSFHATIDAGEESHCAS-LGLTKDEVEAMLNFFCKNCEYKQ--HQCFACGKLG 100 (1210)
Q Consensus 30 DdVCaIC~dG---GELLCCDGsC~RSFH~~C~dGeeS~Cls-LGLTe~evqp~~sW~CpnCe~gQ--HqCFVCGqlG 100 (1210)
..+|..|+.. ..+|.-. .+.||..|..=.. |.. |.-. .....+..+|..|-... ..|..|++.-
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~~--C~~~L~~~--~f~~~g~~yC~~~y~~~f~~~C~~C~~~I 75 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKAL---DRHWHSKCLKCSD--CHVPLAER--CFSRGESVYCKDDFFKRFGTKCAACQLGI 75 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECS---SCEECTTTSBCTT--TCCBCCSC--CEESSSCEECHHHHHHHHSCBCTTTCCBC
T ss_pred CCccccCCCccCCcEEEEEC---CcEEccccCccCC--CCCcCCCC--CcccCCeeeeccccccccccccccccccc
Confidence 4689999983 3345444 3789988754111 311 2111 12235678898885443 5788887653
No 264
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=35.41 E-value=15 Score=30.63 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=18.1
Q ss_pred CcccccccCC---CCeeccccccCCcccccc
Q 000955 30 DSVCSFCDNG---GDLLCCEGRCLRSFHATI 57 (1210)
Q Consensus 30 DdVCaIC~dG---GELLCCDGsC~RSFH~~C 57 (1210)
+..|.||... ++.+..- .|.-.||..|
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~C 43 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRL-PCMHLFHQVC 43 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEEC-TTSCEEEHHH
T ss_pred CCCCeeCCccccCCCcEEEe-CCCCHHHHHH
Confidence 5779999653 3333333 5888999985
No 265
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.16 E-value=7 Score=34.38 Aligned_cols=15 Identities=33% Similarity=0.849 Sum_probs=13.8
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..||..++
T Consensus 47 ~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWV 61 (81)
T ss_dssp TTSCEEEHHHHHHHT
T ss_pred CCCCccChHHHHHHH
Confidence 699999999999886
No 266
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=35.02 E-value=37 Score=30.54 Aligned_cols=30 Identities=13% Similarity=0.324 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHhhh-----cccchHHHHHhhccC
Q 000955 403 DEDSKRRLSSLMKDA-----ASSVRMEEILKRHKI 432 (1210)
Q Consensus 403 d~~~erR~l~l~~~~-----~ss~t~~~v~k~~~~ 432 (1210)
+.+..+.||.++++. --.+|..||.+.+.+
T Consensus 2 ~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv 36 (77)
T 2jt1_A 2 SESIVTKIISIVQERQNMDDGAPVKTRDIADAAGL 36 (77)
T ss_dssp CCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCC
Confidence 346778899999887 457899999988877
No 267
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=34.96 E-value=1.2e+02 Score=29.94 Aligned_cols=35 Identities=11% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHhhccc-ccCCCcEEeccCCcchHHHHHHHHH
Q 000955 523 QAIVDKLHWY-VNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 523 ~~i~~~Lh~y-v~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
..|...|..+ +.+|++|+|+.||.-.|+..+.+++
T Consensus 60 ~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~ 95 (227)
T 1g8a_A 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIV 95 (227)
T ss_dssp HHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHH
T ss_pred HHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHh
Confidence 4443334333 7789999999999999999887754
No 268
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=34.86 E-value=34 Score=35.54 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=27.7
Q ss_pred hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 521 KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 521 kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
++..++++|. +.+|++|||+.||.-.++..+.++
T Consensus 60 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~ 93 (302)
T 3hem_A 60 KRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAE 93 (302)
T ss_dssp HHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHh
Confidence 5566777663 689999999999999999888665
No 269
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=34.83 E-value=25 Score=36.86 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=30.1
Q ss_pred hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 518 KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 518 k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
+...+.+++++|...+.++.+|+|+.||.-.++..+.+
T Consensus 17 k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~ 54 (313)
T 3bgv_A 17 KSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK 54 (313)
T ss_dssp HHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh
Confidence 44667888899888888999999999999998887754
No 270
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=34.78 E-value=33 Score=34.14 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=28.3
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
+...+.+|..++.++.+|+|+.||.-.++..|.+.
T Consensus 43 ~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~ 77 (245)
T 3ggd_A 43 VVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQF 77 (245)
T ss_dssp HHHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHh
Confidence 34556666667899999999999999999888664
No 271
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=34.68 E-value=22 Score=35.03 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=27.1
Q ss_pred HHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 524 AIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 524 ~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
.+++.|.-++.+|.+|+|+.||.-.|+..+.+.
T Consensus 42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~ 74 (242)
T 3l8d_A 42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT 74 (242)
T ss_dssp THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc
Confidence 355666666789999999999999999988764
No 272
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=34.31 E-value=32 Score=36.41 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=71.2
Q ss_pred hcccccCCCcEEeccCCcchHHHHHHHHHH---hhCCccc-------cccccccCCCCCccccccccccccCCCCCCCCe
Q 000955 529 LHWYVNDGDMIVDFCCGANDFSCLMKKKLD---ETGKNCL-------YKNYDILPAKNDFNFEKRDWMTVEPKELAPGSR 598 (1210)
Q Consensus 529 Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~---~~gk~c~-------~kn~dl~~~kn~f~Fe~~dw~~v~~~elp~G~~ 598 (1210)
|--||.+|++|+|+|||+--++..+-+... -++.+.+ -+|.....-.+...|...|+++.-+.+- .=+-
T Consensus 15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~-~~D~ 93 (230)
T 3lec_A 15 VANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEAD-NIDT 93 (230)
T ss_dssp HHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG-CCCE
T ss_pred HHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccc-ccCE
Confidence 345789999999999999999998865321 1222222 2344444445678888889887643210 1245
Q ss_pred eeeeeCCCccchhhhHHHHHHhhhccCCcEEEEecCCccccccc-----cCCCceeeecc
Q 000955 599 LIMGLNPPFGVKAGLANKFINKALEFNPKLLILIVPPETERLDR-----KESAYELVWED 653 (1210)
Q Consensus 599 LimgLnPPfg~~a~lAnkFi~kal~F~PkliilI~P~~t~rld~-----k~~~Y~liwed 653 (1210)
+|++ |.-|.+--+|++.+...-...-.||+=|-+. .|. ...+|.++-|.
T Consensus 94 Ivia-----GmGg~lI~~IL~~~~~~l~~~~~lIlqp~~~-~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 94 ITIC-----GMGGRLIADILNNDIDKLQHVKTLVLQPNNR-EDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp EEEE-----EECHHHHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHHHTTEEEEEEE
T ss_pred EEEe-----CCchHHHHHHHHHHHHHhCcCCEEEEECCCC-hHHHHHHHHHCCCEEEEEE
Confidence 5666 7778889999998876532222333333322 221 13477766544
No 273
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=34.21 E-value=21 Score=34.49 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=26.2
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
+..+++.|.- +.++.+|+|+.||.-.|+..|.+.
T Consensus 34 ~~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~ 67 (218)
T 3ou2_A 34 APAALERLRA-GNIRGDVLELASGTGYWTRHLSGL 67 (218)
T ss_dssp HHHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhc
Confidence 5555555533 568889999999999999988664
No 274
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.20 E-value=4.9 Score=34.26 Aligned_cols=15 Identities=47% Similarity=1.065 Sum_probs=13.4
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..|+
T Consensus 43 ~C~H~fh~~Ci~~w~ 57 (75)
T 1x4j_A 43 PCNHEFHAKCVDKWL 57 (75)
T ss_dssp TTTEEEETTHHHHHH
T ss_pred CCCCHhHHHHHHHHH
Confidence 599999999999875
No 275
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=33.93 E-value=32 Score=35.51 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.1
Q ss_pred HhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 527 DKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 527 ~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
+.|..++.+|++|+|+.||.-.++..+.+
T Consensus 112 ~~l~~~~~~~~~VLDiGcG~G~l~~~la~ 140 (254)
T 2nxc_A 112 KALARHLRPGDKVLDLGTGSGVLAIAAEK 140 (254)
T ss_dssp HHHHHHCCTTCEEEEETCTTSHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHH
Confidence 33444578999999999999999887755
No 276
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=33.78 E-value=35 Score=33.49 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=26.5
Q ss_pred HHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 523 QAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 523 ~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
..+++.|.-++.++.+|+|+.||.-.|+..+.++.
T Consensus 28 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~ 62 (239)
T 3bxo_A 28 SDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF 62 (239)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC
Confidence 34444444455789999999999999998887654
No 277
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=33.70 E-value=22 Score=37.56 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=27.8
Q ss_pred hHHH-HHHhh-cccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 521 KLQA-IVDKL-HWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 521 kl~~-i~~~L-h~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
||-. |.+-| .-++++|++|+|+.||+.-|...+-+..
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~V 99 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDII 99 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHh
Confidence 4433 33333 3579999999999999999998887644
No 278
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=33.21 E-value=57 Score=32.42 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=29.2
Q ss_pred hhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 520 DKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 520 ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
+.++.++++|. +.+|.+|+|+.||.-.++..+.+++
T Consensus 42 ~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 77 (266)
T 3ujc_A 42 EATKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY 77 (266)
T ss_dssp HHHHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc
Confidence 44566777663 6789999999999999999997765
No 279
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=32.61 E-value=18 Score=35.50 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=33.5
Q ss_pred ccccchhhhhhhcccchhHHHHHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHH
Q 000955 438 YASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKW 492 (1210)
Q Consensus 438 ~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~w 492 (1210)
--.|.++|+.||++| .|.+.|-|.|+..|. +++++..||..
T Consensus 42 Kelr~~aEklITlaK-~g~l~~rR~a~~~l~-------------~~~~v~KLF~~ 82 (118)
T 1gd8_A 42 KELRGFVDHLIHLAK-RGDLHARRLVLRDLQ-------------DVKLVRKLFDE 82 (118)
T ss_dssp HHHHHHHHHHHHHHH-HCSHHHHHHHHHHSC-------------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhh-cCCHHHHHHHHHHhC-------------CHHHHHHHHHH
Confidence 346778999999999 789999999999887 44678777765
No 280
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=32.36 E-value=31 Score=31.82 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhhhcccchHHHHHhhc
Q 000955 404 EDSKRRLSSLMKDAASSVRMEEILKRH 430 (1210)
Q Consensus 404 ~~~erR~l~l~~~~~ss~t~~~v~k~~ 430 (1210)
++.|.+||+|++..+.-||.+++...+
T Consensus 13 ~~ie~~IL~l~~~~P~GItd~~L~~~~ 39 (81)
T 2dk8_A 13 VEIENRIIELCHQFPHGITDQVIQNEM 39 (81)
T ss_dssp HHHHHHHHHHHHHCSSCEEHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHC
Confidence 377899999999999999999988876
No 281
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=32.16 E-value=42 Score=30.46 Aligned_cols=47 Identities=11% Similarity=0.240 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhhhcccchHHHHHhhccCCccccccccchhhhhhhcccchhHHH-HHHHHHHhcccCCCCHH
Q 000955 404 EDSKRRLSSLMKDAASSVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVE-AIRTALKKLDVDGSSIE 475 (1210)
Q Consensus 404 ~~~erR~l~l~~~~~ss~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~-Avr~AL~kLe~~g~sie 475 (1210)
++++.+||.+++... ..|..+|.+.+.+ +.. |||..|..||.+|. |+
T Consensus 10 ~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgi-----------------------t~~~aVr~hL~~Le~eGl-V~ 57 (79)
T 1xmk_A 10 AEIKEKICDYLFNVS-DSSALNLAKNIGL-----------------------TKARDINAVLIDMERQGD-VY 57 (79)
T ss_dssp HHHHHHHHHHHHHTC-CEEHHHHHHHHCG-----------------------GGHHHHHHHHHHHHHTTS-EE
T ss_pred hhHHHHHHHHHHHcC-CcCHHHHHHHcCC-----------------------CcHHHHHHHHHHHHHCCC-EE
Confidence 588999999998765 5778888877766 334 89999999996774 54
No 282
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=31.76 E-value=30 Score=36.27 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.1
Q ss_pred cCCCcEEeccCCcchHHHHHHH
Q 000955 534 NDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 534 ~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
.+|.+|+|+.||.--++..+.+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~ 99 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFL 99 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHH
Confidence 5788999999999999887765
No 283
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=31.56 E-value=1.7e+02 Score=28.98 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=24.9
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
...++.++. +.+|++|+|+.||.-.++..+-+.
T Consensus 80 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~ 112 (248)
T 2yvl_A 80 SFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEV 112 (248)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh
Confidence 344555554 578999999999998888877553
No 284
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=31.55 E-value=76 Score=30.09 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=65.9
Q ss_pred CchHHHHHHHHHHhhhcccchHHHHHhhccCCccccccccchhhhhhhcccchhHHHHHHHHHHhcccCCCCHHHHhhhc
Q 000955 402 LDEDSKRRLSSLMKDAASSVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKAVC 481 (1210)
Q Consensus 402 ~d~~~erR~l~l~~~~~ss~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~siedAkAvc 481 (1210)
+| +..++||.++++. ..+|..++.+...+ |..+|+..|++|+.+|. |+--.++-
T Consensus 7 ld-~~d~~il~~L~~~-~~~s~~ela~~lg~-----------------------s~~tv~~~l~~L~~~G~-i~~~~~~~ 60 (151)
T 2dbb_A 7 LD-RVDMQLVKILSEN-SRLTYRELADILNT-----------------------TRQRIARRIDKLKKLGI-IRKFTIIP 60 (151)
T ss_dssp CC-HHHHHHHHHHHHC-TTCCHHHHHHHTTS-----------------------CHHHHHHHHHHHHHHTS-EEEEEEEE
T ss_pred CC-HHHHHHHHHHHHc-CCCCHHHHHHHHCc-----------------------CHHHHHHHHHHHHHCCC-EEEEEecC
Confidence 55 4567899888765 46899999888766 23455677888875664 44333333
Q ss_pred ChhHHhHHHHHhhhcccccccccccccccccCcccchhhhHHHHHHhh-------cccccCC--CcEEeccC--CcchHH
Q 000955 482 EPEVLSQIFKWKNKLKVYLAPFLHGMRYTSFGRHFTKVDKLQAIVDKL-------HWYVNDG--DMIVDFCC--GANDFS 550 (1210)
Q Consensus 482 ~p~vL~Ql~~wk~kL~vylaP~l~G~rytS~grhFTk~ekl~~i~~~L-------h~yv~~g--d~ivdfcc--g~n~fs 550 (1210)
+|..+ |...+-|-.--.......++.+.| +-|.-.| |.++-+-+ ...++.
T Consensus 61 ~~~~~-------------------g~~~~a~v~v~~~~~~~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~~d~~~l~ 121 (151)
T 2dbb_A 61 DIDKL-------------------GYMYAIVLIKSKVPSDADKVISEISDIEYVKSVEKGVGRYNIIVRLLLPKDIKDAE 121 (151)
T ss_dssp CTGGG-------------------TEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEEESSCSEEEEEEEESSHHHHH
T ss_pred ChHHh-------------------CCCEEEEEEEEeCCCCHHHHHHHHHcCCCeEEEeEecCCCCEEEEEEEcCCHHHHH
Confidence 44333 322222222222333445555554 2333345 45777776 456888
Q ss_pred HHHHHHHHhh
Q 000955 551 CLMKKKLDET 560 (1210)
Q Consensus 551 ~lmk~kl~~~ 560 (1210)
+++.++|...
T Consensus 122 ~~~~~~l~~~ 131 (151)
T 2dbb_A 122 NLISEFLQRI 131 (151)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhhcC
Confidence 8887777664
No 285
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=31.42 E-value=41 Score=33.54 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=30.5
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
.+.+..+++.|. +.+|.+|+|+.||.-.++..+.+++
T Consensus 22 ~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~ 58 (256)
T 1nkv_A 22 EEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH 58 (256)
T ss_dssp HHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc
Confidence 456778888875 6899999999999999998886644
No 286
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=31.35 E-value=90 Score=34.50 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=61.2
Q ss_pred HHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHHhhhcccccc---------------------------cccccc---c
Q 000955 459 AIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVYLA---------------------------PFLHGM---R 508 (1210)
Q Consensus 459 Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~wk~kL~vyla---------------------------P~l~G~---r 508 (1210)
.|..|.++++ +|.+++ +++..|...+++.++|+. |+|+-. +
T Consensus 165 lv~~Aa~l~~-~G~s~e--------eI~~~le~~~~~~~~~f~v~~L~yL~kGGRIs~~~a~iG~lL~IKPIl~~~~dG~ 235 (320)
T 3pl5_A 165 LAMLAAQARE-EGKSLK--------ETKELILDVGPRLRTFFLVDNLYHLMRGGRLSKTSAIVGSLVNIKPLLWLDASGK 235 (320)
T ss_dssp HHHHHHHHHH-TTCCHH--------HHHHHHHHHGGGEEEEEECSCSHHHHHHTCCC--------CTTEEEEEEECTTSC
T ss_pred HHHHHHHHHh-cCCCHH--------HHHHHHHHHHhhceEEEEECChHHHHhCCCccHHHHHHHhhhCceEEEEEccCCe
Confidence 4556667777 899988 456677777777666643 666433 6
Q ss_pred ccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHh
Q 000955 509 YTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDE 559 (1210)
Q Consensus 509 ytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~ 559 (1210)
+..+++--|..-.++++++.+.-++. ...|.=..++..+.-.-++++|.+
T Consensus 236 l~~~~KvRg~kka~~~lv~~~~~~~~-~~~v~I~h~~~~e~a~~l~~~l~~ 285 (320)
T 3pl5_A 236 LVPIAKLRGRKKGMKEMLKRATADVA-HDTAVVAYANDSEAAENLKEQLLA 285 (320)
T ss_dssp EEEEEEEESHHHHHHHHHHHHTSSCC-SSEEEEEESSCHHHHHHHHHHHHT
T ss_pred EEEEeeecCHHHHHHHHHHHHHHhcC-CCEEEEEeCCCHHHHHHHHHHHHh
Confidence 78888888888888888888877666 333333344444556666666654
No 287
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=31.23 E-value=8 Score=34.56 Aligned_cols=15 Identities=47% Similarity=1.088 Sum_probs=13.4
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..|+
T Consensus 60 ~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 60 PCHHYFHKPCVSIWL 74 (91)
T ss_dssp TTTEEEEHHHHHHHH
T ss_pred CCCChHHHHHHHHHH
Confidence 599999999999875
No 288
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=31.04 E-value=27 Score=36.48 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=29.8
Q ss_pred ccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 511 SFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 511 S~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
.-|..+..-+.-.-++..|. +++|++|+|+|||.-.++..|-+.+
T Consensus 61 ~~G~~~~qd~~s~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~ 105 (274)
T 3ajd_A 61 LFGYYMPQSISSMIPPIVLN--PREDDFILDMCAAPGGKTTHLAQLM 105 (274)
T ss_dssp HTTSEEECCSGGGHHHHHHC--CCTTCEEEETTCTTCHHHHHHHHHT
T ss_pred hCCeEEEeCHHHHHHHHHhC--CCCcCEEEEeCCCccHHHHHHHHHc
Confidence 34544444333333444443 5799999999999999998886643
No 289
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=30.81 E-value=28 Score=36.69 Aligned_cols=126 Identities=21% Similarity=0.377 Sum_probs=72.7
Q ss_pred cccchhh---hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccc--------------cCCCC
Q 000955 514 RHFTKVD---KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDI--------------LPAKN 576 (1210)
Q Consensus 514 rhFTk~e---kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl--------------~~~kn 576 (1210)
.|.|..| .|.++++.+-.|+.+.++|+|+=||.|.++-.+.. +...- .|--+|| .-..+
T Consensus 25 ~H~STReRLp~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~---~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~ 100 (200)
T 3fzg_A 25 IHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWN---ENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTI 100 (200)
T ss_dssp HSHHHHTTGGGHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHC---SSCCC-EEEEECSCHHHHHHHHHHHHHSCCSS
T ss_pred hCCCHHHHhHhHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHh---cCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence 3555555 45666777777899999999999999999988722 21222 4444443 22233
Q ss_pred CccccccccccccCCCCCCCC-eeeeeeCC-Cc--cchhhhHHHHHHhhhccCCcEEEEecC--CccccccccCCCceee
Q 000955 577 DFNFEKRDWMTVEPKELAPGS-RLIMGLNP-PF--GVKAGLANKFINKALEFNPKLLILIVP--PETERLDRKESAYELV 650 (1210)
Q Consensus 577 ~f~Fe~~dw~~v~~~elp~G~-~LimgLnP-Pf--g~~a~lAnkFi~kal~F~PkliilI~P--~~t~rld~k~~~Y~li 650 (1210)
++.| .|-++ .+|.|. -+||++|= |. ..+++++ +.+ -..+|.-|++-.| ...-|-=+-...|.-.
T Consensus 101 ~v~~--~d~~~----~~~~~~~DvVLa~k~LHlL~~~~~al~-~v~---~~L~pggvfISfptksl~Gr~~gm~~~Y~~~ 170 (200)
T 3fzg_A 101 KYRF--LNKES----DVYKGTYDVVFLLKMLPVLKQQDVNIL-DFL---QLFHTQNFVISFPIKSLSGKEKGMEENYQLW 170 (200)
T ss_dssp EEEE--ECCHH----HHTTSEEEEEEEETCHHHHHHTTCCHH-HHH---HTCEEEEEEEEEECCCCC--CTTCCCCHHHH
T ss_pred cEEE--ecccc----cCCCCCcChhhHhhHHHhhhhhHHHHH-HHH---HHhCCCCEEEEeChHHhcCCCcchhhhHHHH
Confidence 3444 33333 234554 68888764 22 2234555 333 2468888888888 2222222224467777
Q ss_pred ecc
Q 000955 651 WED 653 (1210)
Q Consensus 651 wed 653 (1210)
||.
T Consensus 171 ~~~ 173 (200)
T 3fzg_A 171 FES 173 (200)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 290
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=30.58 E-value=23 Score=41.91 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=27.5
Q ss_pred CcccccccCC--C---CeeccccccCCccccccccCcccccccCCCChhh--hhccccccccchhhccccccccCCCCCC
Q 000955 30 DSVCSFCDNG--G---DLLCCEGRCLRSFHATIDAGEESHCASLGLTKDE--VEAMLNFFCKNCEYKQHQCFACGKLGSS 102 (1210)
Q Consensus 30 DdVCaIC~dG--G---ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~e--vqp~~sW~CpnCe~gQHqCFVCGqlGSS 102 (1210)
-.+|.+|.+. | +=+.|. .|.-..|..|.......|..-...... ......|.-.+- .....|-.|++.-..
T Consensus 48 p~~C~~C~~~i~g~~~qg~~C~-~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~-~~~~~C~~C~~~l~g 125 (674)
T 3pfq_A 48 PTFCSHCTDFIWGFGKQGFQCQ-VCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTY-SSPTFCDHCGSLLYG 125 (674)
T ss_dssp -------------------------------------------------------CCCCCEECC-SSCCCCSSSCSCCBB
T ss_pred CCccccccccccccCCceeECC-CCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCC-CCCCCCCccccccch
Confidence 4579999873 3 568898 699999999976544456221111000 001123331110 012368888775210
Q ss_pred CCCCCCcccccCCCCCCCCCccccccccc
Q 000955 103 DKETGAEVFPCVSATCGHFYHPHCVSKLL 131 (1210)
Q Consensus 103 DK~SGaELfkCsVasCGKFYHpkCLa~l~ 131 (1210)
....-++|. .|....|..|....+
T Consensus 126 ---~~~qg~~C~--~C~~~~H~~C~~~v~ 149 (674)
T 3pfq_A 126 ---LIHQGMKCD--TCMMNVHKRCVMNVP 149 (674)
T ss_dssp ---SSSCEECCS--SSCCCBCSSTTSSSC
T ss_pred ---hhcCccccc--cCCcchhhhhhhccC
Confidence 012568998 999999999987643
No 291
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=30.52 E-value=11 Score=36.17 Aligned_cols=15 Identities=20% Similarity=0.811 Sum_probs=13.2
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.||+.||..|+..|.
T Consensus 70 ~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 70 NCAHSFCSYCINEWM 84 (138)
T ss_dssp TTSCEEEHHHHHHHT
T ss_pred CCCCCccHHHHHHHH
Confidence 699999999998765
No 292
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=30.20 E-value=39 Score=35.26 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=27.8
Q ss_pred hhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 520 DKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 520 ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
.++..++++|. +.+|++|+|+.||.-.|...|.+++
T Consensus 77 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~ 112 (318)
T 2fk8_A 77 AKVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF 112 (318)
T ss_dssp HHHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC
Confidence 34555666654 5789999999999999998887654
No 293
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=30.14 E-value=69 Score=32.71 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=26.5
Q ss_pred hHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 521 KLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 521 kl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
++..++++|. +.+|.+|+|+.||.-.++..+.++.
T Consensus 52 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~ 86 (287)
T 1kpg_A 52 KIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY 86 (287)
T ss_dssp HHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHc
Confidence 4445555553 5789999999999999998886543
No 294
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.06 E-value=27 Score=29.61 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=13.3
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.|+..|+..+.
T Consensus 36 ~CgH~fC~~Ci~~~~ 50 (85)
T 2ecv_A 36 DCGHSFCQACLTANH 50 (85)
T ss_dssp SSSCCBCTTHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999775
No 295
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=30.00 E-value=14 Score=41.84 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=50.7
Q ss_pred CCCcEEeccCCcchHHHHHHHHHHh----hCCcccc-------ccccccCCCCC-ccccccccccccCCCCCCCCeeeee
Q 000955 535 DGDMIVDFCCGANDFSCLMKKKLDE----TGKNCLY-------KNYDILPAKND-FNFEKRDWMTVEPKELAPGSRLIMG 602 (1210)
Q Consensus 535 ~gd~ivdfccg~n~fs~lmk~kl~~----~gk~c~~-------kn~dl~~~kn~-f~Fe~~dw~~v~~~elp~G~~Limg 602 (1210)
+|.+|+|++||.--|+-.+-.++.. ++.+-+- +|..+..-.|. ..|...|-..+-..++ .+..=++-
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~~~fD~V~ 130 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-GFGFDYVD 130 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-SSCEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-CCCCcEEE
Confidence 6999999999999999887654311 2222221 33333322222 3344334322211012 22233444
Q ss_pred eCCCccchhhhHHHHHHhhhc-cCCcEEEEecC
Q 000955 603 LNPPFGVKAGLANKFINKALE-FNPKLLILIVP 634 (1210)
Q Consensus 603 LnPPfg~~a~lAnkFi~kal~-F~PkliilI~P 634 (1210)
||| || .+..|++.|+. .+|.=||.++=
T Consensus 131 lDP-~g----~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP-FG----TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC-SS----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC-Cc----CHHHHHHHHHHHhCCCCEEEEEe
Confidence 798 65 34569999987 67765555543
No 296
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=29.82 E-value=27 Score=38.08 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=20.7
Q ss_pred ccc-hhhhHHHHHHhhcccccCCCcEEeccCCcc
Q 000955 515 HFT-KVDKLQAIVDKLHWYVNDGDMIVDFCCGAN 547 (1210)
Q Consensus 515 hFT-k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n 547 (1210)
|.| |+..|.+-+ |..+-.+||+|+||.||+-
T Consensus 223 ~~~~kp~~l~~~~--i~~~~~~~~~vlDpF~GsG 254 (319)
T 1eg2_A 223 HPTQKPAAVIERL--VRALSHPGSTVLDFFAGSG 254 (319)
T ss_dssp CTTCCCHHHHHHH--HHHHSCTTCEEEETTCTTC
T ss_pred CCCCCCHHHHHHH--HHHhCCCCCEEEecCCCCC
Confidence 544 444443322 3356799999999999985
No 297
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.76 E-value=21 Score=32.18 Aligned_cols=15 Identities=40% Similarity=0.977 Sum_probs=13.3
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.|+..|+..+.
T Consensus 38 ~CgH~fC~~Ci~~~~ 52 (112)
T 1jm7_A 38 KCDHIFCKFCMLKLL 52 (112)
T ss_dssp TTSCCCCSHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999775
No 298
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=29.63 E-value=1e+02 Score=32.79 Aligned_cols=94 Identities=11% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC--------------CCCccccccccccc
Q 000955 523 QAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA--------------KNDFNFEKRDWMTV 588 (1210)
Q Consensus 523 ~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~--------------kn~f~Fe~~dw~~v 588 (1210)
..+++.+- +.++.+|||+.||.-.++..+.++. ..+.+-.+|+ +. .+...|...|+++
T Consensus 173 ~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~----~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 244 (360)
T 1tw3_A 173 DAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRA----PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE- 244 (360)
T ss_dssp HHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-
T ss_pred HHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhC----CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-
Confidence 44555554 3678899999999999998886643 3445555665 32 1357787788764
Q ss_pred cCCCCCCCCeeeeeeCCCccchhhhHHHHHHhhhcc-CCc
Q 000955 589 EPKELAPGSRLIMGLNPPFGVKAGLANKFINKALEF-NPK 627 (1210)
Q Consensus 589 ~~~elp~G~~LimgLnPPfg~~a~lAnkFi~kal~F-~Pk 627 (1210)
.+|.+--+|+--+.-..+...-+.+++.++... +|.
T Consensus 245 ---~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pg 281 (360)
T 1tw3_A 245 ---PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG 281 (360)
T ss_dssp ---CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred ---CCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCC
Confidence 345443455543332122222233555555432 454
No 299
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=29.62 E-value=11 Score=36.29 Aligned_cols=15 Identities=47% Similarity=1.147 Sum_probs=0.0
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|+..||..||..++
T Consensus 83 ~C~H~FH~~CI~~Wl 97 (117)
T 4a0k_B 83 VCNHAFHFHCISRWL 97 (117)
T ss_dssp ---------------
T ss_pred CcCceEcHHHHHHHH
Confidence 799999999999986
No 300
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=29.56 E-value=13 Score=33.96 Aligned_cols=15 Identities=27% Similarity=0.804 Sum_probs=13.7
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..||..|+
T Consensus 60 ~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 60 KCSHAFHLLCLLAMY 74 (114)
T ss_dssp SSCCEECHHHHHHHH
T ss_pred CCCCcccHHHHHHHH
Confidence 799999999999886
No 301
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=29.49 E-value=9.7 Score=32.49 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=22.0
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCCCCCccccccccc
Q 000955 90 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLL 131 (1210)
Q Consensus 90 QHqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~ 131 (1210)
...|.||...+. ..-+.-|.-....+++|..||..|.
T Consensus 6 ~~~CrIC~~~~~-----~~l~~PC~C~gs~~~~H~~Cl~~W~ 42 (60)
T 1vyx_A 6 VPVCWICNEELG-----NERFRACGCTGELENVHRSCLSTWL 42 (60)
T ss_dssp CCEETTTTEECS-----CCCCCSCCCSSGGGSCCHHHHHHHH
T ss_pred CCEeEEeecCCC-----CceecCcCCCCchhhhHHHHHHHHH
Confidence 346788865432 1124455311223599999999986
No 302
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=29.11 E-value=2e+02 Score=27.84 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=24.6
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
+.++++.|.. .++..|||+.||.-.|+..|.++
T Consensus 34 ~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~l~~~ 66 (220)
T 3hnr_A 34 YEDILEDVVN--KSFGNVLEFGVGTGNLTNKLLLA 66 (220)
T ss_dssp HHHHHHHHHH--TCCSEEEEECCTTSHHHHHHHHT
T ss_pred HHHHHHHhhc--cCCCeEEEeCCCCCHHHHHHHhC
Confidence 3444555433 38999999999999999988664
No 303
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=29.01 E-value=18 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.878 Sum_probs=17.5
Q ss_pred cccccccchhhc----cccccccCCCC
Q 000955 78 MLNFFCKNCEYK----QHQCFACGKLG 100 (1210)
Q Consensus 78 ~~sW~CpnCe~g----QHqCFVCGqlG 100 (1210)
.++|+|+.|... ...||.|+..-
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~pr 29 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGADK 29 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCBT
T ss_pred CCCCCcCcCcCCcChhcceecCCCCcC
Confidence 478999999663 46799997653
No 304
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=28.94 E-value=38 Score=32.90 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=24.0
Q ss_pred HHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 526 VDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 526 ~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
+.++.-.+.+|.+|+|+.||.-.|+..+.++
T Consensus 34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 64 (211)
T 3e23_A 34 LTKFLGELPAGAKILELGCGAGYQAEAMLAA 64 (211)
T ss_dssp HHHHHTTSCTTCEEEESSCTTSHHHHHHHHT
T ss_pred HHHHHHhcCCCCcEEEECCCCCHHHHHHHHc
Confidence 3333344568999999999999999988664
No 305
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=28.93 E-value=30 Score=36.04 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=20.3
Q ss_pred ccccCCCcEEeccCCcchHHHHHHH
Q 000955 531 WYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 531 ~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
.+..+||+|+|+.||+-...--..+
T Consensus 208 ~~~~~~~~vlD~f~GsGtt~~~a~~ 232 (260)
T 1g60_A 208 ASSNPNDLVLDCFMGSGTTAIVAKK 232 (260)
T ss_dssp HHCCTTCEEEESSCTTCHHHHHHHH
T ss_pred HhCCCCCEEEECCCCCCHHHHHHHH
Confidence 3579999999999999988765533
No 306
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=28.71 E-value=45 Score=32.53 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=27.5
Q ss_pred ccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 515 HFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 515 hFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
-++.......+++.|.-+ .++.+|+|+.||.-.|+..|.+
T Consensus 23 ~~~~~~~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~ 62 (250)
T 2p7i_A 23 NFDFDVMHPFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQE 62 (250)
T ss_dssp CHHHHTHHHHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHH
Confidence 343333445555555444 4778999999999999988854
No 307
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.66 E-value=29 Score=27.63 Aligned_cols=15 Identities=27% Similarity=0.904 Sum_probs=13.4
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..+.
T Consensus 32 ~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 32 ECGHNFCKACITRWW 46 (58)
T ss_dssp SSCCCCCHHHHHHHT
T ss_pred CCCCccCHHHHHHHH
Confidence 699999999999875
No 308
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=28.44 E-value=1.1e+02 Score=30.52 Aligned_cols=26 Identities=4% Similarity=0.097 Sum_probs=22.7
Q ss_pred cccCCCcEEeccCCcchHHHHHHHHH
Q 000955 532 YVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 532 yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
.+.+|++|+|+.||.-.|+..|.+++
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~ 99 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIV 99 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHh
Confidence 37889999999999999999887754
No 309
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=28.14 E-value=15 Score=35.93 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=21.3
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCCCCCCccccccccc
Q 000955 91 HQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLL 131 (1210)
Q Consensus 91 HqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~ 131 (1210)
..|.||...-. +.+.+. .|++.||..|+..+.
T Consensus 55 ~~C~IC~~~~~-------~p~~~~--~CgH~fC~~Ci~~~~ 86 (165)
T 2ckl_B 55 LMCPICLDMLK-------NTMTTK--ECLHRFCADCIITAL 86 (165)
T ss_dssp HBCTTTSSBCS-------SEEEET--TTCCEEEHHHHHHHH
T ss_pred CCCcccChHhh-------CcCEeC--CCCChhHHHHHHHHH
Confidence 35777755421 223332 799999999999875
No 310
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=28.08 E-value=32 Score=34.68 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=29.1
Q ss_pred cchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 516 FTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 516 FTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
+...+.+..+++.|. +.++.+|+|+.||.-.|+..|.+
T Consensus 20 ~~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~ 57 (260)
T 1vl5_A 20 HAKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAP 57 (260)
T ss_dssp ---CCCHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGG
T ss_pred ccCHHHHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHH
Confidence 345567888888875 46899999999999999888754
No 311
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=27.90 E-value=42 Score=35.63 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=24.3
Q ss_pred Ccccc-hhhhH-HHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 513 GRHFT-KVDKL-QAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 513 grhFT-k~ekl-~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
+.|.| +++.| +.+++. +-.+||+|+|+.||+-.+.-...+
T Consensus 214 ~~h~~~~p~~l~~~~i~~---~~~~~~~vlD~f~GsGt~~~~a~~ 255 (297)
T 2zig_A 214 KDHPAPFPLELAERLVRM---FSFVGDVVLDPFAGTGTTLIAAAR 255 (297)
T ss_dssp ----CCSCHHHHHHHHHH---HCCTTCEEEETTCTTTHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHH---hCCCCCEEEECCCCCCHHHHHHHH
Confidence 35666 44433 334433 347999999999999988766543
No 312
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=27.88 E-value=12 Score=33.93 Aligned_cols=31 Identities=23% Similarity=0.614 Sum_probs=21.1
Q ss_pred cccccCCCCCCCCCCCCcccccCCCCCCCCCccccccccc
Q 000955 92 QCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLL 131 (1210)
Q Consensus 92 qCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~ 131 (1210)
.|.||...- .+.+.|. .|++.|+..|+..+.
T Consensus 24 ~C~IC~~~~-------~~p~~~~--~CgH~FC~~Ci~~~~ 54 (100)
T 3lrq_A 24 RCFICMEKL-------RDARLCP--HCSKLCCFSCIRRWL 54 (100)
T ss_dssp BCTTTCSBC-------SSEEECT--TTCCEEEHHHHHHHH
T ss_pred CCccCCccc-------cCccccC--CCCChhhHHHHHHHH
Confidence 466775542 1234444 899999999999875
No 313
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=27.47 E-value=64 Score=32.07 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=33.4
Q ss_pred ccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 507 MRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 507 ~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
..|..+.+... ....+++++|. +.++.+|+|+.||.-.++..+.+++
T Consensus 9 ~~y~~~~~~~~--~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 55 (259)
T 2p35_A 9 QQYLKFEDERT--RPARDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRY 55 (259)
T ss_dssp GGGBCCCCGGG--HHHHHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhC
Confidence 45655555433 33456666664 4788999999999999999887764
No 314
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=27.31 E-value=58 Score=31.65 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=26.9
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
.+.+++.+. +.+|.+|+|+.||.-.++..+.+.+
T Consensus 26 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~ 59 (219)
T 3dh0_A 26 PEKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMV 59 (219)
T ss_dssp HHHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHH
T ss_pred HHHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHh
Confidence 355566553 5789999999999999999987755
No 315
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=27.19 E-value=52 Score=33.78 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=29.7
Q ss_pred hhHHHHHHhhcc--cccCCCcEEeccCCcchHHHHHHHHH
Q 000955 520 DKLQAIVDKLHW--YVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 520 ekl~~i~~~Lh~--yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
..+..++++|-| -+.+|.+|||+.||.-.|+..|.+++
T Consensus 65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~ 104 (297)
T 2o57_A 65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF 104 (297)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 355667777754 35789999999999999999887654
No 316
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=27.16 E-value=31 Score=40.83 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=27.0
Q ss_pred cccccCCCCCCCCCcccccccccccchHHHHHHHHH-hhccCCcee----cCCccccccCCCccCCCCCCceeeccccCc
Q 000955 109 EVFPCVSATCGHFYHPHCVSKLLLRDDEVAADQLAK-SIIAGESFT----CPLHKCCICKQGENKADSDLQFAVCRRCPK 183 (1210)
Q Consensus 109 ELfkCsVasCGKFYHpkCLa~l~~pvde~~AteLek-kIaaGksFr----CPlH~C~vCkkseDkn~~egqLIrCdRCPK 183 (1210)
.-++|. .|+-..|..|....... .......... .....-.|. ...-+|..|+..-..- ..+-++|..|..
T Consensus 64 qg~~C~--~C~~~~H~~C~~~v~~~-c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~~l~g~--~~qg~~C~~C~~ 138 (674)
T 3pfq_A 64 QGFQCQ--VCSFVVHKRCHEFVTFS-CPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGL--IHQGMKCDTCMM 138 (674)
T ss_dssp -----------------------------------------CCCCCEECCSSCCCCSSSCSCCBBS--SSCEECCSSSCC
T ss_pred ceeECC--CCCCCcChhhcCcCccc-CCCcccccccccccCCcceeecCCCCCCCCCccccccchh--hcCccccccCCc
Confidence 568998 89999999998764321 0000000000 000011232 1223699997752111 125789999999
Q ss_pred ccccccCCCC
Q 000955 184 AYHRKCLPRK 193 (1210)
Q Consensus 184 AYH~kCLPPp 193 (1210)
..|.+|....
T Consensus 139 ~~H~~C~~~v 148 (674)
T 3pfq_A 139 NVHKRCVMNV 148 (674)
T ss_dssp CBCSSTTSSS
T ss_pred chhhhhhhcc
Confidence 9999998653
No 317
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=27.16 E-value=1.3e+02 Score=30.21 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=19.4
Q ss_pred cCCCcEEeccCCcchHHHHHHH
Q 000955 534 NDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 534 ~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
.++.+|+|+.||.--++..|..
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~ 90 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKI 90 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHH
T ss_pred CCCCEEEEecCCCCHHHHHHHH
Confidence 6889999999999999888764
No 318
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=26.96 E-value=41 Score=38.55 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=29.1
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccc
Q 000955 90 QHQCFACGKLGSSDKETGAEVFPCVSATCGHFYHPHCVSKLLL 132 (1210)
Q Consensus 90 QHqCFVCGqlGSSDK~SGaELfkCsVasCGKFYHpkCLa~l~~ 132 (1210)
+..|.||-..-..+ .......|....|++.||..||..|+.
T Consensus 308 ~~ECaICys~~l~~--g~lPdk~C~n~~C~h~FH~~CL~kWLr 348 (381)
T 3k1l_B 308 ELRCNICFAYRLDG--GEVPLVSCDNAKCVLKCHAVCLEEWFK 348 (381)
T ss_dssp CCSCSSSCCSSCTT--CCCCCBCCSCTTCCCCBCSGGGHHHHH
T ss_pred CccCcccceeecCC--CCCccccccCCccCCccchHHHHHHHH
Confidence 44689996643211 112346898899999999999999974
No 319
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=26.53 E-value=13 Score=34.83 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.7
Q ss_pred cccCCCcEEeccCCcchHHHHHHHH
Q 000955 532 YVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 532 yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
++.++.+|+|+.||.-.|+..+.+.
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~~ 67 (195)
T 3cgg_A 43 MAPRGAKILDAGCGQGRIGGYLSKQ 67 (195)
T ss_dssp HSCTTCEEEEETCTTTHHHHHHHHT
T ss_pred hccCCCeEEEECCCCCHHHHHHHHC
Confidence 4789999999999999999888653
No 320
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=26.49 E-value=47 Score=35.63 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 525 IVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 525 i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
++..|. +++|++|+|+|||.-.++..|-+.+
T Consensus 110 ~~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~ 140 (315)
T 1ixk_A 110 PPVALD--PKPGEIVADMAAAPGGKTSYLAQLM 140 (315)
T ss_dssp HHHHHC--CCTTCEEEECCSSCSHHHHHHHHHT
T ss_pred HHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 344443 6899999999999999998886643
No 321
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=26.37 E-value=19 Score=38.88 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=41.4
Q ss_pred cccccccCcccchhhhHHHHHHhhcccccCCCcEE-eccCCcchHH----HHHHHHHHhh
Q 000955 506 GMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIV-DFCCGANDFS----CLMKKKLDET 560 (1210)
Q Consensus 506 G~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~iv-dfccg~n~fs----~lmk~kl~~~ 560 (1210)
||+|++||+-|++...+.++.+.+-=+... .-+| ||..|..++. ..|.+.+.+.
T Consensus 1 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~g~p~~~~~~~~~~~~~~~~~ 59 (444)
T 3if2_A 1 GMKFSKFGQKFTQPTGISQLMDDLGDALKS-DQPVNMLGGGNPAKIDAVNELFLETYKAL 59 (444)
T ss_dssp CCCCCHHHHHHHSCCHHHHHHHHHHHHHHS-SSCCEECSCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCcchhhhhccCchhHHHHHHHHHhhhcC-chhhhccCCCCCCcccchHHHHHHHHHHH
Confidence 899999999999988888888877555555 4466 9999999885 4455555543
No 322
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.10 E-value=16 Score=29.90 Aligned_cols=15 Identities=27% Similarity=0.868 Sum_probs=13.4
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..+.
T Consensus 37 ~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 37 DCGHNFCLKCITQIG 51 (63)
T ss_dssp TTSSEECHHHHHHHH
T ss_pred CCCCcchHHHHHHHH
Confidence 699999999999875
No 323
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=25.88 E-value=62 Score=34.53 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=19.3
Q ss_pred ccCC--CcEEeccCCcchHHHHHHH
Q 000955 533 VNDG--DMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 533 v~~g--d~ivdfccg~n~fs~lmk~ 555 (1210)
+.+| ++|||+.||.-.++-.+-.
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~ 108 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLAS 108 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHH
Confidence 4577 9999999999999887754
No 324
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=25.45 E-value=36 Score=36.29 Aligned_cols=35 Identities=3% Similarity=-0.127 Sum_probs=28.8
Q ss_pred hhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 519 VDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 519 ~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
.+.++.+++.|. +.+|.+|+|+.||.-.++..+-+
T Consensus 31 ~~~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~ 65 (261)
T 3iv6_A 31 PSDRENDIFLEN--IVPGSTVAVIGASTRFLIEKALE 65 (261)
T ss_dssp CCHHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHh
Confidence 466777888774 68899999999999999887754
No 325
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=25.44 E-value=14 Score=34.46 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=13.0
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.||+.|+..|+..+.
T Consensus 69 ~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSF 83 (124)
T ss_dssp TTSCEEEHHHHHHHH
T ss_pred eCCCcccHHHHHHHH
Confidence 699999999998764
No 326
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=25.33 E-value=22 Score=39.63 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=19.6
Q ss_pred CCCcEEeccCCcchHHHHHHHH
Q 000955 535 DGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 535 ~gd~ivdfccg~n~fs~lmk~k 556 (1210)
.|.+|+|+|||.--++-.+-++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~ 68 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALE 68 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHh
Confidence 7999999999999999887664
No 327
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=25.32 E-value=47 Score=33.52 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=27.3
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
...+++.|.-++.++.+|||+.||.-.|+..+.+
T Consensus 37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~ 70 (263)
T 3pfg_A 37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLAD 70 (263)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTT
T ss_pred HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHH
Confidence 4556666666777889999999999999988854
No 328
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=25.22 E-value=23 Score=32.55 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=13.4
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.|+..|+..+.
T Consensus 32 ~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 32 PCNHTLCKPCFQSTV 46 (115)
T ss_dssp TTSCEECHHHHCCCC
T ss_pred CCCCHHhHHHHHHHH
Confidence 699999999999875
No 329
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=25.19 E-value=2.2e+02 Score=27.84 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.0
Q ss_pred ccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 531 WYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 531 ~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
-...++.+|||+.||.-.|+..+.+++
T Consensus 40 ~~~~~~~~vLDiG~G~G~~~~~l~~~~ 66 (234)
T 3dtn_A 40 SVDTENPDILDLGAGTGLLSAFLMEKY 66 (234)
T ss_dssp CCSCSSCEEEEETCTTSHHHHHHHHHC
T ss_pred hcCCCCCeEEEecCCCCHHHHHHHHhC
Confidence 346789999999999999999887754
No 330
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.02 E-value=25 Score=29.83 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=13.2
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.|+..|+..+.
T Consensus 36 ~CgH~fC~~Ci~~~~ 50 (85)
T 2ecw_A 36 DCNHSFCRACITLNY 50 (85)
T ss_dssp TTSCCBCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999765
No 331
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=24.85 E-value=67 Score=31.98 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=19.2
Q ss_pred cCCCcEEeccCCcchHHHHHHH
Q 000955 534 NDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 534 ~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
.++.+|+|+.||.-.++..+.+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~ 61 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAE 61 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHH
Confidence 5788999999999999988755
No 332
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=24.57 E-value=1.5e+02 Score=31.89 Aligned_cols=92 Identities=17% Similarity=0.254 Sum_probs=61.3
Q ss_pred HHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHHhhhcccccc---------------------------ccccc---cc
Q 000955 459 AIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVYLA---------------------------PFLHG---MR 508 (1210)
Q Consensus 459 Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~wk~kL~vyla---------------------------P~l~G---~r 508 (1210)
.|..|.++++ +|.+.+ +++..|..++++.++|+. |+|+- -+
T Consensus 130 ~v~~A~~l~~-~G~s~e--------eI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~~~~G~ 200 (285)
T 3lup_A 130 LVRNALMCSR-EGMDFD--------VIVNKIQSQIEKIEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHFNEEGK 200 (285)
T ss_dssp HHHHHHHHHT-TTCCHH--------HHHHHHHHHHTTCEEEEECSCTHHHHHHTCBTTHHHHHHHHTTSCCEEEECTTSC
T ss_pred HHHHHHHHHH-cCCCHH--------HHHHHHHHHHhhcEEEEEECChHHHhhCCCccHHHHHHHHhhCcEEEEEEccCce
Confidence 4556777778 899988 456677777777666643 56543 25
Q ss_pred ccccCcccchhhhHHHHHHhhcccccCCCcEEeccC-CcchHHHHHHHHHHh
Q 000955 509 YTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCC-GANDFSCLMKKKLDE 559 (1210)
Q Consensus 509 ytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfcc-g~n~fs~lmk~kl~~ 559 (1210)
+..+++.-|..-.++.+++.+.-++.+++..|-+.. +..+--.-++++|.+
T Consensus 201 l~~~~KvRg~kka~~~l~~~~~~~~~~~~~~v~i~h~~~~e~a~~l~~~l~~ 252 (285)
T 3lup_A 201 IVVYEKVRTEKKALKRLAEIVKEMTADGEYDIAIIHSRAQDKAEQLYNLLAK 252 (285)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHGGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEeeecCCHHHHHHHHHHHHHHhhcCCCcEEEEEeCCCHHHHHHHHHHHHh
Confidence 778888888877788888877766665554444444 444455566666665
No 333
>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural GE PSI-2, protein structure initiative; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum}
Probab=24.52 E-value=1.3e+02 Score=32.32 Aligned_cols=93 Identities=14% Similarity=0.206 Sum_probs=61.6
Q ss_pred HHHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHHhhhcccccc---------------------------cccc--ccc
Q 000955 458 EAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVYLA---------------------------PFLH--GMR 508 (1210)
Q Consensus 458 ~Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~wk~kL~vyla---------------------------P~l~--G~r 508 (1210)
-.|..|.++++ +|.+.+ +++.+|.+.+++.++|+. |+|+ .-+
T Consensus 108 ~~v~~Aa~l~~-~G~s~e--------eI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~~dG~ 178 (277)
T 3egl_A 108 AAAMAAARMAX-DGASLQ--------ECYDIAVDTLXRSETWIYLHRIDEIWXSGRISTATAMVSTALATRPIMRFNGGR 178 (277)
T ss_dssp HHHHHHHHHHH-TTCCHH--------HHHHHHHHHHHTEEEEEECSCSHHHHHTTCSCTTTCSSGGGGCSSCEEEEETTE
T ss_pred HHHHHHHHHHH-cCCCHH--------HHHHHHHHHHhhceEEEEcCCHHHHhhCCccchHHHHHhhccceEEEEEEeCCE
Confidence 34556677778 899988 456677777767666654 4443 236
Q ss_pred ccccCcccchhhhHHHHHHhhcccccCCCcEEeccCC-cchHHHHHHHHHHh
Q 000955 509 YTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCG-ANDFSCLMKKKLDE 559 (1210)
Q Consensus 509 ytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg-~n~fs~lmk~kl~~ 559 (1210)
+..+++--|..-.++.+++.+.-++..++..|-++-+ ..+.-.-++++|.+
T Consensus 179 l~~~~KvRg~kka~~~l~~~~~~~~~~~~~~i~i~h~~~~e~a~~l~~~l~~ 230 (277)
T 3egl_A 179 MEIAAXTRTQSXAFAXLVELAQIRADGEPVFIAIGQNEAREAAXQLEELLRN 230 (277)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTSCCEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEecCChhHHHHHHHHHHHHHhCCCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence 7788888888888888888887777555544444443 34455566666665
No 334
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=24.48 E-value=25 Score=35.19 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=37.0
Q ss_pred ccCcccccccCC--C-CeeccccccCCccccccccCcccccccCCCCh---hhhhccccccccchhhcc--c--cccccC
Q 000955 28 LFDSVCSFCDNG--G-DLLCCEGRCLRSFHATIDAGEESHCASLGLTK---DEVEAMLNFFCKNCEYKQ--H--QCFACG 97 (1210)
Q Consensus 28 lnDdVCaIC~dG--G-ELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe---~evqp~~sW~CpnCe~gQ--H--qCFVCG 97 (1210)
+...+|..|+.. + .+|.-. .+.||..|..=.. |.. .|.. .-....+..+|..|-... . .|..|+
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~~--C~~-~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~ 76 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAM---DSYWHSRCLKCSS--CQA-QLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACG 76 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEET---TEEECGGGCBCTT--TCC-BHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTC
T ss_pred CCCCcCccCCCEeCCceeEEec---CcEecccCcccCC--CCc-ccccCCceEEEeCCccccccccccccccCCccccCC
Confidence 346789999983 3 344444 3789988764111 311 1111 001134678899885432 2 588887
Q ss_pred CCC
Q 000955 98 KLG 100 (1210)
Q Consensus 98 qlG 100 (1210)
+.-
T Consensus 77 ~~I 79 (188)
T 1rut_X 77 QSI 79 (188)
T ss_dssp CEE
T ss_pred Ccc
Confidence 753
No 335
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=24.14 E-value=46 Score=37.69 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=35.4
Q ss_pred hhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCcccccccc
Q 000955 520 DKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYD 570 (1210)
Q Consensus 520 ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~d 570 (1210)
=.|+|+++.|. +++|+++||.+||.-.-|..+ |+..|..+..=-||
T Consensus 44 VLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~i---L~~lg~~GrVig~D 89 (347)
T 3tka_A 44 VLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLI---LSQLGEEGRLLAID 89 (347)
T ss_dssp TTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHH---HTTCCTTCEEEEEE
T ss_pred ccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHH---HHhCCCCCEEEEEE
Confidence 35889999997 589999999999999999988 44555444433444
No 336
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=24.05 E-value=50 Score=32.31 Aligned_cols=24 Identities=13% Similarity=0.291 Sum_probs=21.8
Q ss_pred ccCCCcEEeccCCcchHHHHHHHH
Q 000955 533 VNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 533 v~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
+.+|++|+|+.||.-.|+..|.++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~ 48 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQ 48 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHH
T ss_pred ccCCCEEEEecCCCCHHHHHHHHH
Confidence 678999999999999999998775
No 337
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=23.91 E-value=1.9e+02 Score=29.59 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.6
Q ss_pred CCCcEEeccCCcchHHHHHHHH
Q 000955 535 DGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 535 ~gd~ivdfccg~n~fs~lmk~k 556 (1210)
++..|+|+.||.-.|+..|.++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~ 141 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL 141 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT
T ss_pred CCCcEEEECCCCCHHHHHHHHC
Confidence 8999999999999999888664
No 338
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=23.81 E-value=27 Score=29.86 Aligned_cols=15 Identities=33% Similarity=0.877 Sum_probs=13.2
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..++
T Consensus 33 ~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 33 CCGNSYCDECIRTAL 47 (74)
T ss_dssp SSCCEECTTHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 499999999999875
No 339
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.75 E-value=1.4e+02 Score=28.98 Aligned_cols=113 Identities=15% Similarity=0.326 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhhcccchHHHHHhhccCCccccccccchhhhhhhcccchhHHHHHHHHHHhcccCCCCHHHHhhhcChh
Q 000955 405 DSKRRLSSLMKDAASSVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKAVCEPE 484 (1210)
Q Consensus 405 ~~erR~l~l~~~~~ss~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~siedAkAvc~p~ 484 (1210)
+..++||.++++-. .++..++.++..+ |..+|+.-|++|+.+|. |.--.|+-+|+
T Consensus 3 ~~d~~il~~L~~~~-~~s~~~la~~lg~-----------------------s~~tv~~rl~~L~~~g~-i~~~~a~~~~~ 57 (162)
T 3i4p_A 3 RLDRKILRILQEDS-TLAVADLAKKVGL-----------------------STTPCWRRIQKMEEDGV-IRRRVALLDPV 57 (162)
T ss_dssp HHHHHHHHHHTTCS-CSCHHHHHHHHTC-----------------------CHHHHHHHHHHHHHTTS-SCCCCCCCCTT
T ss_pred HHHHHHHHHHHHCC-CCCHHHHHHHHCc-----------------------CHHHHHHHHHHHHHCCC-eeeceeeeCHH
Confidence 45688999998754 6788888887766 44567788899986664 44333444444
Q ss_pred HHhHHHHHhhhcccccccccccccccccCcccchh---hhHHHHHHhh-------cccccCCC--cEEeccC-CcchHHH
Q 000955 485 VLSQIFKWKNKLKVYLAPFLHGMRYTSFGRHFTKV---DKLQAIVDKL-------HWYVNDGD--MIVDFCC-GANDFSC 551 (1210)
Q Consensus 485 vL~Ql~~wk~kL~vylaP~l~G~rytS~grhFTk~---ekl~~i~~~L-------h~yv~~gd--~ivdfcc-g~n~fs~ 551 (1210)
.| |...+-|-.--... +.+.++++.| +-|.-.|+ .++-+-+ ...++..
T Consensus 58 ~l-------------------G~~~~a~v~v~v~~~~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~l~v~~~d~~~l~~ 118 (162)
T 3i4p_A 58 KV-------------------NTKVTVFVSIRTASHSIEWLKRFSEVVSEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDA 118 (162)
T ss_dssp TT-------------------TCCEEEEEEEECCSCCHHHHHHHHHHHHHCTTEEEEEECCSSCSEEEEEEESSHHHHHH
T ss_pred Hh-------------------cCcEEEEEEEEEcCCChHHHHHHHHHHhcCCCEEEeeecCCCCCEEEEEEECCHHHHHH
Confidence 33 44333333222221 3355555543 56666674 4555544 4568889
Q ss_pred HHHHHHHhhC
Q 000955 552 LMKKKLDETG 561 (1210)
Q Consensus 552 lmk~kl~~~g 561 (1210)
++.+.|...+
T Consensus 119 ~l~~~l~~~~ 128 (162)
T 3i4p_A 119 FYKRMIAKIE 128 (162)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHhhcCC
Confidence 9988877755
No 340
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=23.70 E-value=2.8e+02 Score=30.07 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=35.5
Q ss_pred hhHHHHHHhh---cccccCCCcEEeccCCc------chHHHHHHHHHHhhCCccccccccccCCCCCccc-ccccccccc
Q 000955 520 DKLQAIVDKL---HWYVNDGDMIVDFCCGA------NDFSCLMKKKLDETGKNCLYKNYDILPAKNDFNF-EKRDWMTVE 589 (1210)
Q Consensus 520 ekl~~i~~~L---h~yv~~gd~ivdfccg~------n~fs~lmk~kl~~~gk~c~~kn~dl~~~kn~f~F-e~~dw~~v~ 589 (1210)
.+..++.+.| +-.+.+|++|+|+|||+ -. .++.+++ +.....--.|+-+.-.+..| ...|+.+..
T Consensus 45 ~~y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~---~~~~~V~gvDis~~v~~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 45 AKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWL---PTGTLLVDSDLNDFVSDADSTLIGDCATVH 119 (290)
T ss_dssp HHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHS---CTTCEEEEEESSCCBCSSSEEEESCGGGCC
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHc---CCCCEEEEEECCCCCCCCEEEEECccccCC
Confidence 3444455545 35789999999999944 33 4443332 22222333333332234667 777776643
No 341
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=23.62 E-value=1e+02 Score=31.12 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=28.1
Q ss_pred cchhhhHHHHHHhhccc--ccCCCcEEeccCCcchHHHHHHHH
Q 000955 516 FTKVDKLQAIVDKLHWY--VNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 516 FTk~ekl~~i~~~Lh~y--v~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
++..+..+.++++|.=. +.+|.+|+|+.||.-.|+..+.++
T Consensus 40 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 82 (273)
T 3bus_A 40 VSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATA 82 (273)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHh
Confidence 44444444444444322 468999999999999999888653
No 342
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=23.52 E-value=1.4e+02 Score=32.03 Aligned_cols=92 Identities=10% Similarity=0.110 Sum_probs=59.3
Q ss_pred HHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHHhhhcccccc---------------------------ccccc---cc
Q 000955 459 AIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVYLA---------------------------PFLHG---MR 508 (1210)
Q Consensus 459 Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~wk~kL~vyla---------------------------P~l~G---~r 508 (1210)
.|..|.++++ +|.|.+ +++.+|.+.+++.++|+. |+|+- -+
T Consensus 125 ~v~~A~~~~~-~G~s~~--------eI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~~~~G~ 195 (278)
T 3fdj_A 125 ILEQLQQMIE-EGKKFE--------EIDGAIDAYMQKTRLFCSLKSLHNLAQNGRVSKVVASAAEVLGISVIGTASSHGT 195 (278)
T ss_dssp HHHHHHHHHH-TTCCHH--------HHHHHHHHHHTTEEEEEEESCCHHHHHTTSSCHHHHHGGGSTTEEEEEEECTTSS
T ss_pred HHHHHHHHHH-cCCCHH--------HHHHHHHHHHhcceEEEEECChHHHHHCCcchHHHHHHHHhhCcEEEEEEccCCe
Confidence 4556667777 899988 456777777777666643 66643 36
Q ss_pred ccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHh
Q 000955 509 YTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDE 559 (1210)
Q Consensus 509 ytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~ 559 (1210)
+..+++.-|..-.++++++.+.-.-..+..|.=..++..+--.-++++|.+
T Consensus 196 l~~~~KvRg~kka~~~l~~~~~~~~~~~~~v~i~h~~~~e~a~~l~~~l~~ 246 (278)
T 3fdj_A 196 LEAIGKCRGDKKLLVKLQALLDDAGYEGGKLRICHVENEALADKIADMIKQ 246 (278)
T ss_dssp EEEEEEEESHHHHHHHHHHHHHHHTCCSCCEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEeeeecCHHHHHHHHHHHHHHhCCCCcEEEEEecCCHHHHHHHHHHHHH
Confidence 778888888877777777776543223334443345555556666666665
No 343
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=23.42 E-value=66 Score=32.60 Aligned_cols=80 Identities=9% Similarity=0.083 Sum_probs=46.6
Q ss_pred hhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC--------------CCCCcccccccc
Q 000955 520 DKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP--------------AKNDFNFEKRDW 585 (1210)
Q Consensus 520 ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~--------------~kn~f~Fe~~dw 585 (1210)
+.+..+++.|- .+.+|.+|+|+.||.-.|...+.+. ..+.+--.|+-+ -.+...|...|+
T Consensus 32 ~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 105 (267)
T 3kkz_A 32 EVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGH-----VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105 (267)
T ss_dssp HHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT-----CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh
Confidence 33444555554 5689999999999999999888653 122333333321 124577877777
Q ss_pred ccccCCCCCCCCeeeeeeCCCcc
Q 000955 586 MTVEPKELAPGSRLIMGLNPPFG 608 (1210)
Q Consensus 586 ~~v~~~elp~G~~LimgLnPPfg 608 (1210)
..+. ++.++.=++-.+..|.
T Consensus 106 ~~~~---~~~~~fD~i~~~~~~~ 125 (267)
T 3kkz_A 106 DDLP---FRNEELDLIWSEGAIY 125 (267)
T ss_dssp TSCC---CCTTCEEEEEESSCGG
T ss_pred hhCC---CCCCCEEEEEEcCCce
Confidence 5543 3455433333344443
No 344
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=23.41 E-value=53 Score=34.06 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=33.7
Q ss_pred cccccccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 502 PFLHGMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 502 P~l~G~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
+-.....|..|-.++ ++.+.+.+..++ ..++.+|+|+.||.-.+...|.+++
T Consensus 7 ~~~~~~~y~~~rp~y--~~~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~la~~~ 58 (299)
T 3g5t_A 7 SDFNSERYSSSRPSY--PSDFYKMIDEYH--DGERKLLVDVGCGPGTATLQMAQEL 58 (299)
T ss_dssp TTCCHHHHHHHSCCC--CHHHHHHHHHHC--CSCCSEEEEETCTTTHHHHHHHHHS
T ss_pred cccChHHHhhcCCCC--CHHHHHHHHHHh--cCCCCEEEEECCCCCHHHHHHHHhC
Confidence 333445555555444 233444444443 2689999999999999999987643
No 345
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=23.40 E-value=1.4e+02 Score=28.14 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhhcccchHHHHHhhccCCccccccccchhhhhhhcccchhHHHHHHHHHHhcccCCCCHHHHhhhcChh
Q 000955 405 DSKRRLSSLMKDAASSVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKAVCEPE 484 (1210)
Q Consensus 405 ~~erR~l~l~~~~~ss~t~~~v~k~~~~~st~~~~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~siedAkAvc~p~ 484 (1210)
++.++||.++++.. .++..++.+...+ |-.+|+..|++|+..|. |+-..++-+|+
T Consensus 3 ~~~~~il~~L~~~~-~~~~~ela~~lg~-----------------------s~~tv~~~l~~L~~~G~-i~~~~~~~d~~ 57 (150)
T 2pn6_A 3 EIDLRILKILQYNA-KYSLDEIAREIRI-----------------------PKATLSYRIKKLEKDGV-IKGYYAYINPA 57 (150)
T ss_dssp HHHHHHHHHHTTCT-TSCHHHHHHHHTS-----------------------CHHHHHHHHHHHHHTTS-SCCCCCCCCGG
T ss_pred hHHHHHHHHHHHcC-CCCHHHHHHHHCc-----------------------CHHHHHHHHHHHHHCCc-EEEEEeecCHH
Confidence 45678888887643 6888888888766 23355677888886775 55444555554
Q ss_pred HHhHHHHHhhhcccccccccccccccccCcccchhhhHHHHHHh-------hcccccCCC--cEEeccCC-cchHHHHHH
Q 000955 485 VLSQIFKWKNKLKVYLAPFLHGMRYTSFGRHFTKVDKLQAIVDK-------LHWYVNDGD--MIVDFCCG-ANDFSCLMK 554 (1210)
Q Consensus 485 vL~Ql~~wk~kL~vylaP~l~G~rytS~grhFTk~ekl~~i~~~-------Lh~yv~~gd--~ivdfccg-~n~fs~lmk 554 (1210)
.+- ..+.+|+.=-..| ..+.+.++.+. +++|.-.|+ .++-+-+- ..++..++.
T Consensus 58 ~~g------~~~~a~v~v~~~~-----------~~~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~l~ 120 (150)
T 2pn6_A 58 SLN------LDYIVITSVKAKY-----------GKNYHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFL 120 (150)
T ss_dssp GGT------CCEEEEEEEEECC-----------CTTHHHHHHHHHHTSTTEEEEEECSSSCSEEEEEEESSHHHHHHHTH
T ss_pred HhC------CceEEEEEEEecC-----------ChhHHHHHHHHHhcCchhhhhhhhcCcCCEEEEEEECCHHHHHHHHH
Confidence 431 0111111100110 02334444444 366766664 46666554 457888886
Q ss_pred HHHHhh
Q 000955 555 KKLDET 560 (1210)
Q Consensus 555 ~kl~~~ 560 (1210)
++|...
T Consensus 121 ~~l~~~ 126 (150)
T 2pn6_A 121 ERVMSI 126 (150)
T ss_dssp HHHTTC
T ss_pred HHhccC
Confidence 666653
No 346
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=23.26 E-value=62 Score=32.16 Aligned_cols=36 Identities=6% Similarity=0.114 Sum_probs=28.1
Q ss_pred hhHHHHHHhh---cccccCCCcEEeccCCcchHHHHHHH
Q 000955 520 DKLQAIVDKL---HWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 520 ekl~~i~~~L---h~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
+-...+++.| .-.+.++.+|+|+.||.-.++..+.+
T Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~ 59 (263)
T 2yqz_A 21 EVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIA 59 (263)
T ss_dssp HHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHH
Confidence 3455566666 55778999999999999999887754
No 347
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.25 E-value=28 Score=29.07 Aligned_cols=15 Identities=27% Similarity=0.868 Sum_probs=13.4
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..+.
T Consensus 37 ~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 37 DCGHNFCLKCITQIG 51 (73)
T ss_dssp TTCCEEEHHHHHHHC
T ss_pred CCCChhhHHHHHHHH
Confidence 699999999999875
No 348
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=22.78 E-value=2.1e+02 Score=31.00 Aligned_cols=73 Identities=8% Similarity=0.135 Sum_probs=47.0
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC--------------CCCcccccccccc
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA--------------KNDFNFEKRDWMT 587 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~--------------kn~f~Fe~~dw~~ 587 (1210)
+..+++.+-| .++.+|||+.||.-.++..+.++. ..+.+-.+|+ +. .+...|..-|.++
T Consensus 191 ~~~l~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~ 263 (369)
T 3gwz_A 191 AGQVAAAYDF--SGAATAVDIGGGRGSLMAAVLDAF----PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE 263 (369)
T ss_dssp HHHHHHHSCC--TTCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred HHHHHHhCCC--ccCcEEEEeCCCccHHHHHHHHHC----CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC
Confidence 3455555543 578899999999999998886643 3456667777 42 3567888888873
Q ss_pred ccCCCCCCCCeeeeeeCC
Q 000955 588 VEPKELAPGSRLIMGLNP 605 (1210)
Q Consensus 588 v~~~elp~G~~LimgLnP 605 (1210)
.+|.+=-+|+--|-
T Consensus 264 ----~~p~~~D~v~~~~v 277 (369)
T 3gwz_A 264 ----TIPDGADVYLIKHV 277 (369)
T ss_dssp ----CCCSSCSEEEEESC
T ss_pred ----CCCCCceEEEhhhh
Confidence 34533334444343
No 349
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=22.60 E-value=46 Score=35.35 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=21.7
Q ss_pred cccccccCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHH----HHHHHHHHh
Q 000955 506 GMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFS----CLMKKKLDE 559 (1210)
Q Consensus 506 G~rytS~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs----~lmk~kl~~ 559 (1210)
||.|++||+.++.+..+..+++++.-... +.-++||.-|.+++. ..|++.+.+
T Consensus 1 ~m~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~~~~~~~~~~~~~~ 57 (417)
T 3g7q_A 1 GMTFSLFGDKFTRHSGITRLMEDLNDGLR-TPGAIMLGGGNPAHIPAMQDYFQTLLTD 57 (417)
T ss_dssp ---------------CHHHHHHHHHC------CCEECSCCCCCCCHHHHHHHHHHHHH
T ss_pred CCchhhhhhhhhccccHHHHHHHHHhhcc-CCCceEecCcCCCCCChHHHHHHHHHHH
Confidence 89999999999987776666665533322 256899999999983 344444443
No 350
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=22.44 E-value=66 Score=33.25 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=28.8
Q ss_pred hhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 518 KVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 518 k~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
..+-+..+++++ +-+.++.+|+|+.||.-.|...|.+.
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~ 43 (284)
T 3gu3_A 6 NDDYVSFLVNTV-WKITKPVHIVDYGCGYGYLGLVLMPL 43 (284)
T ss_dssp CHHHHHHHHHTT-SCCCSCCEEEEETCTTTHHHHHHTTT
T ss_pred chHHHHHHHHHH-hccCCCCeEEEecCCCCHHHHHHHHh
Confidence 344455566555 55778999999999999999988553
No 351
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=22.35 E-value=81 Score=36.23 Aligned_cols=41 Identities=15% Similarity=0.346 Sum_probs=31.9
Q ss_pred cCcccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 512 FGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 512 ~grhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
||... ...+..++++|. +.+|++|+|+.||.-.+...|.+.
T Consensus 223 yGet~--p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~ 263 (433)
T 1u2z_A 223 YGELL--PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALE 263 (433)
T ss_dssp CCCBC--HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHH
T ss_pred ccccc--HHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHH
Confidence 44443 666777887774 679999999999999998887664
No 352
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.00 E-value=36 Score=31.59 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=38.3
Q ss_pred cCcccccccCC---CCeeccccccCCccccccccCcccccccCCCChhh-hhccccccccchhhc--cccccccCCCC
Q 000955 29 FDSVCSFCDNG---GDLLCCEGRCLRSFHATIDAGEESHCASLGLTKDE-VEAMLNFFCKNCEYK--QHQCFACGKLG 100 (1210)
Q Consensus 29 nDdVCaIC~dG---GELLCCDGsC~RSFH~~C~dGeeS~ClsLGLTe~e-vqp~~sW~CpnCe~g--QHqCFVCGqlG 100 (1210)
+..+|..|+.. ++.+.-.| +.||..|..=.. |.. .|+... ....+..+|..|-.+ ...|..|++.-
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~---~~~H~~CF~C~~--C~~-~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I 73 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAEN---QNWHLKHFCCFD--CDS-ILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAI 73 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETT---EEECGGGSBCTT--TCC-BCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBC
T ss_pred cCCCCccCCCEeCCceEEeeCC---CCccCCCCCcCC--CCC-CCCcCEEEeECCEEechHHhCcCcCccCcccCCcC
Confidence 35689999883 55554443 789988754111 311 111111 123467889888554 35788887764
No 353
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.88 E-value=30 Score=28.65 Aligned_cols=15 Identities=40% Similarity=1.015 Sum_probs=13.3
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..+.
T Consensus 32 ~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 32 ECGHRFCESCMAALL 46 (66)
T ss_dssp SSSCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999999764
No 354
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=21.88 E-value=86 Score=34.70 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=32.3
Q ss_pred cccccc-ccC-----cccchhhhHHHHHHhhcccccCCCcEEeccCCcchHHHHHHH
Q 000955 505 HGMRYT-SFG-----RHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 555 (1210)
Q Consensus 505 ~G~ryt-S~g-----rhFTk~ekl~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~ 555 (1210)
+|.||. +.+ -.|......+..+. +++.+|.+|+|++||.-.|+..+-+
T Consensus 179 ~g~~f~v~~~~~~~t~ff~~~~~~~~~~~---~~~~~~~~VLDl~cGtG~~sl~la~ 232 (385)
T 2b78_A 179 NGISYNVFLNDGLMTGIFLDQRQVRNELI---NGSAAGKTVLNLFSYTAAFSVAAAM 232 (385)
T ss_dssp TTEEEEECSSSSSCCSSCGGGHHHHHHHH---HTTTBTCEEEEETCTTTHHHHHHHH
T ss_pred CCEEEEEeccccccCCcCCcHHHHHHHHH---HHhcCCCeEEEEeeccCHHHHHHHH
Confidence 466664 333 34555544444443 3447899999999999999988754
No 355
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=21.40 E-value=28 Score=31.14 Aligned_cols=15 Identities=40% Similarity=0.964 Sum_probs=13.2
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.||+.||..|+..+.
T Consensus 40 ~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 40 QCSHNYCSLCIRKFL 54 (99)
T ss_dssp TTCCEEEHHHHHHHH
T ss_pred CCCCHhhHHHHHHHH
Confidence 699999999998765
No 356
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=21.30 E-value=30 Score=33.85 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=32.0
Q ss_pred cccchhhhhhhcccchhHHHHHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHH
Q 000955 439 ASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKW 492 (1210)
Q Consensus 439 ~~~~~~~k~it~Gkve~sV~Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~w 492 (1210)
-.|.++|+.||++|. |.+.|-|.|+..|. +++++..||..
T Consensus 43 elr~~aEklITlaK~-~~l~~rR~a~~~l~-------------~~~~v~KLF~~ 82 (116)
T 2zjr_K 43 ELRPFVEQLITTAKG-GDLHSRRLVAQDIH-------------DKDVVRKVMDE 82 (116)
T ss_dssp HHHHHHHHHHHHHTT-CSHHHHHHHTTSCC-------------CHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHhc-CCHHHHHHHHHHhC-------------CHHHHHHHHHH
Confidence 456789999999995 88999999988876 44678777765
No 357
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=21.29 E-value=29 Score=35.94 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcccCCCCHHHHhhhcChhHHhHHHHHhhhc
Q 000955 456 SVEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKL 496 (1210)
Q Consensus 456 sV~Avr~AL~kLe~~g~siedAkAvc~p~vL~Ql~~wk~kL 496 (1210)
-++++++||.++. ++...+. ..+.+|.+|.+.|
T Consensus 83 D~e~I~~al~~~~-~~~~~~~-------~~~h~lE~wRdrL 115 (176)
T 2p0t_A 83 DQEAILVLLDQLD-ASTRQYN-------ERFHNLERWRDRL 115 (176)
T ss_dssp CHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhh-cccHHHH-------HHHHHHHHHHHHH
Confidence 3889999999998 5543332 4799999999888
No 358
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.14 E-value=26 Score=30.10 Aligned_cols=15 Identities=47% Similarity=0.990 Sum_probs=13.4
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..+.
T Consensus 36 ~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 36 HCGHTICRQCLEKLL 50 (88)
T ss_dssp SSSCEEEHHHHHHHH
T ss_pred CCCChhhHHHHHHHH
Confidence 699999999999875
No 359
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=21.07 E-value=1.5e+02 Score=31.67 Aligned_cols=70 Identities=9% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccCC--------------CCCcccccccccc
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILPA--------------KNDFNFEKRDWMT 587 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~~--------------kn~f~Fe~~dw~~ 587 (1210)
+..+++++. +.++.+|||+.||.-.++..+.++. ..+.+-.+|+ +. .+...|...|+++
T Consensus 171 ~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 243 (374)
T 1qzz_A 171 YEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRA----PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK 243 (374)
T ss_dssp THHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHC----CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 455666665 3678999999999999998886653 2345555665 31 1356777777764
Q ss_pred ccCCCCCCCCeeeee
Q 000955 588 VEPKELAPGSRLIMG 602 (1210)
Q Consensus 588 v~~~elp~G~~Limg 602 (1210)
.+|.+=-+|+-
T Consensus 244 ----~~~~~~D~v~~ 254 (374)
T 1qzz_A 244 ----PLPVTADVVLL 254 (374)
T ss_dssp ----CCSCCEEEEEE
T ss_pred ----cCCCCCCEEEE
Confidence 34554334544
No 360
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=20.95 E-value=20 Score=29.69 Aligned_cols=15 Identities=20% Similarity=0.678 Sum_probs=13.2
Q ss_pred CCCCCCccccccccc
Q 000955 117 TCGHFYHPHCVSKLL 131 (1210)
Q Consensus 117 sCGKFYHpkCLa~l~ 131 (1210)
.|++.||..|+..+.
T Consensus 23 ~C~H~fc~~Ci~~~~ 37 (68)
T 1chc_A 23 PCLHAFCYVCITRWI 37 (68)
T ss_dssp TTTEEESTTHHHHHH
T ss_pred CCCCeeHHHHHHHHH
Confidence 699999999998764
No 361
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=20.94 E-value=1.8e+02 Score=31.97 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=60.5
Q ss_pred HHHHHHHhcccCCC-CHHHHhhhcChhHHhHHHHHhhhcccccc---------------------------cccc---cc
Q 000955 459 AIRTALKKLDVDGS-SIEDAKAVCEPEVLSQIFKWKNKLKVYLA---------------------------PFLH---GM 507 (1210)
Q Consensus 459 Avr~AL~kLe~~g~-siedAkAvc~p~vL~Ql~~wk~kL~vyla---------------------------P~l~---G~ 507 (1210)
.|..|.++++ +|. +.+ +++..|.+++++.++|+. |+|+ |
T Consensus 160 lv~~Aa~l~~-~G~~s~e--------eI~~~l~~~~~~~~~~f~v~~L~yL~kGGRIs~~~a~ig~lL~IKPIl~~~dG- 229 (315)
T 3fys_A 160 YALKAAELIK-NGASSPE--------DIIKELEEMKKTVRAYFMVDDLAHLQRGGRLSSAQAFIGSLLKVKPILHFDNK- 229 (315)
T ss_dssp HHHHHHHHHH-TTCCCHH--------HHHHHHHHHTTTCEEEEECSCTHHHHHHTTTHHHHHHHSSCCCSCEEEEEETT-
T ss_pred HHHHHHHHHH-cCCCCHH--------HHHHHHHHHHhccEEEEEECchHHHHhCCcchHHHHHHHhhcCcEEEEEEECC-
Confidence 4556677777 899 988 456666677766666643 4443 4
Q ss_pred cccccCcccchhhhHHHHHHhhcccccC-CCcEEecc-CCcchHHHHHHHHHHh
Q 000955 508 RYTSFGRHFTKVDKLQAIVDKLHWYVND-GDMIVDFC-CGANDFSCLMKKKLDE 559 (1210)
Q Consensus 508 rytS~grhFTk~ekl~~i~~~Lh~yv~~-gd~ivdfc-cg~n~fs~lmk~kl~~ 559 (1210)
++..+++--|..-.++.+++.+.-++.. .+..|-+. ++..+--.-++++|.+
T Consensus 230 ~l~~~~KvRg~kka~~~l~~~~~~~~~~~~~~~v~I~h~~~~e~a~~l~~~l~~ 283 (315)
T 3fys_A 230 VIVPFEKIRTRKKAISRIYELLDEDASKGLPMRAAVIHANREEEAAKIIEELSA 283 (315)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHTTCCCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEEeeeccHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHH
Confidence 7888998888888888888888777663 33344444 4444455666676665
No 362
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=20.69 E-value=44 Score=32.49 Aligned_cols=28 Identities=32% Similarity=0.658 Sum_probs=23.1
Q ss_pred hcccccCCCcEEeccCCcchHHHHHHHH
Q 000955 529 LHWYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 529 Lh~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
|.-++.++.+|||+.||.-.++..+.++
T Consensus 24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~ 51 (235)
T 3sm3_A 24 IHNYLQEDDEILDIGCGSGKISLELASK 51 (235)
T ss_dssp HHHHCCTTCEEEEETCTTSHHHHHHHHT
T ss_pred HHHhCCCCCeEEEECCCCCHHHHHHHhC
Confidence 3445779999999999999999888664
No 363
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=20.66 E-value=1.7e+02 Score=33.34 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=45.8
Q ss_pred cccccccCCCCCCC-CeeeeeeCC--Ccc-------------chhhhHHHHHHhhhc--------cCCcEEEEecCCccc
Q 000955 583 RDWMTVEPKELAPG-SRLIMGLNP--PFG-------------VKAGLANKFINKALE--------FNPKLLILIVPPETE 638 (1210)
Q Consensus 583 ~dw~~v~~~elp~G-~~LimgLnP--Pfg-------------~~a~lAnkFi~kal~--------F~PkliilI~P~~t~ 638 (1210)
.|=-++.+.+||.. +-|+.| -| ||. -++.|--.|+.-+-+ .+|+++|+==-+...
T Consensus 112 ~DI~~i~~~~ip~~vDll~gg-pPCQ~fS~ag~~~g~~d~~~~r~~L~~~~~rii~~~~~k~~~~~~Pk~~l~ENV~gl~ 190 (403)
T 4dkj_A 112 FDIKKVNKDNFPKNIDIFTYS-FPCQDLSVQGLQKGIDKELNTRSGLLWEIERILEEIKNSFSKEEMPKYLLMENVKNLL 190 (403)
T ss_dssp CCGGGCCTTTSCSSCSEEEEC-CCCTTTCTTSCCCCCCGGGCCSGGGHHHHHHHHHHHHHHSCGGGSCSEEEEEEEGGGG
T ss_pred cchhhcCHhhCCCCCcEEEEe-CCCCCHHHhCCCCCCCccccccchhHHHHHHHHHHhhhhhccccCCCEEEEecchhhh
Confidence 34456778999986 645544 44 453 455677766665554 899999883222222
Q ss_pred cccc-----------cCCCceeeeccccccCCcceecCC
Q 000955 639 RLDR-----------KESAYELVWEDDQFLSGKSFYLPG 666 (1210)
Q Consensus 639 rld~-----------k~~~Y~liwed~~~l~gksFYlPG 666 (1210)
..+. ..-+|.+-|. +|...-|-+|=
T Consensus 191 ~~~~~~~~~~i~~~l~~~GY~v~~~---vl~a~~~GvPQ 226 (403)
T 4dkj_A 191 SHKNKKNYNTWLKQLEKFGYKSKTY---LLNSKNFDNCQ 226 (403)
T ss_dssp SHHHHHHHHHHHHHHHHTTEEEEEE---EEEGGGTTCSB
T ss_pred hhccchHHHHHHHHHHhCCCeEEEE---EecHHHcCCCc
Confidence 1111 1347887763 45555554443
No 364
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=20.20 E-value=95 Score=30.90 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=25.6
Q ss_pred HHHHHHhhcccccCCCcEEeccCCcchHHHHHHHHH
Q 000955 522 LQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKL 557 (1210)
Q Consensus 522 l~~i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl 557 (1210)
+..+++.|- -+.+|.+|+|+.||.-.+...+.++.
T Consensus 34 ~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~ 68 (257)
T 3f4k_A 34 TRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYV 68 (257)
T ss_dssp HHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHC
T ss_pred HHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhC
Confidence 334444332 46789999999999999998886643
No 365
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=20.16 E-value=52 Score=32.71 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=21.9
Q ss_pred ccccCCCcEEeccCCcchHHHHHHHH
Q 000955 531 WYVNDGDMIVDFCCGANDFSCLMKKK 556 (1210)
Q Consensus 531 ~yv~~gd~ivdfccg~n~fs~lmk~k 556 (1210)
.++.+|.+|+|+.||.-.|+..|.++
T Consensus 44 ~~~~~~~~vLDiGcG~G~~~~~l~~~ 69 (226)
T 3m33_A 44 RLLTPQTRVLEAGCGHGPDAARFGPQ 69 (226)
T ss_dssp HHCCTTCEEEEESCTTSHHHHHHGGG
T ss_pred hcCCCCCeEEEeCCCCCHHHHHHHHc
Confidence 34689999999999999999888553
No 366
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=20.03 E-value=94 Score=32.41 Aligned_cols=101 Identities=9% Similarity=0.089 Sum_probs=55.6
Q ss_pred HHHhhcccccCCCcEEeccCCcchHHHHHHHHHHhhCCccccccccccC--------------CCCCccccccccccccC
Q 000955 525 IVDKLHWYVNDGDMIVDFCCGANDFSCLMKKKLDETGKNCLYKNYDILP--------------AKNDFNFEKRDWMTVEP 590 (1210)
Q Consensus 525 i~~~Lh~yv~~gd~ivdfccg~n~fs~lmk~kl~~~gk~c~~kn~dl~~--------------~kn~f~Fe~~dw~~v~~ 590 (1210)
..+.|.-++.+|.+|+|+.||.-.++..|-. +....+.+--.|+=+ ..+...|..-|+.++..
T Consensus 108 ~~~~l~~~l~~~~~vLDiGcG~G~~~~~la~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (305)
T 3ocj_A 108 FRRALQRHLRPGCVVASVPCGWMSELLALDY---SACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT 184 (305)
T ss_dssp HHHHHHHHCCTTCEEEETTCTTCHHHHTSCC---TTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC
T ss_pred HHHHHHhhCCCCCEEEEecCCCCHHHHHHHH---hcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc
Confidence 3355566789999999999999998887721 112223333333311 12346777777776542
Q ss_pred CCCCCCCeeeeeeCCCccchh--hhHHHHHHhhhc-cCCcEEEEe
Q 000955 591 KELAPGSRLIMGLNPPFGVKA--GLANKFINKALE-FNPKLLILI 632 (1210)
Q Consensus 591 ~elp~G~~LimgLnPPfg~~a--~lAnkFi~kal~-F~PkliilI 632 (1210)
+ ++.=++-.+.++-.-. .-+.+|+.++.. .+|.=+++|
T Consensus 185 ---~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 225 (305)
T 3ocj_A 185 ---R-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225 (305)
T ss_dssp ---C-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---c-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3 4433333466665422 222346666553 356433333
Done!