BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000957
(1209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50 OS=Arabidopsis thaliana GN=RAD50 PE=1 SV=2
Length = 1316
Score = 1768 bits (4580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 873/1209 (72%), Positives = 1028/1209 (85%)
Query: 1 MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPL 60
MEYKAIESVLQTINPHTGEKVCLSYRCADMDRE+PALMGVSKAILENVIFVHQDE+NWPL
Sbjct: 108 MEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPL 167
Query: 61 QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRES 120
QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKT+KLKLENLQTLKDAAYKLRES
Sbjct: 168 QDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRES 227
Query: 121 ISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQ 180
I+QDQE+TE+ K QM ELE S+Q +D ++H+ E+ LKDLRK+QDQ+S TA RSTLF++Q
Sbjct: 228 IAQDQERTESSKVQMLELETSVQKVDAEVHNKEMMLKDLRKLQDQVSIKTAERSTLFKEQ 287
Query: 181 QKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAY 240
Q+QYAAL EE EDT EELK WK+ FE +A + I K+ERE D +T I L Y
Sbjct: 288 QRQYAALPEENEDTIEELKEWKSKFEERLALLGTKIRKMEREMVDTETTISSLHNAKTNY 347
Query: 241 TAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSD 300
EI+ L +EA AHM NERDSTIQ +F +NLG++P+ PFS E LN NRI+SRL +
Sbjct: 348 MLEISKLQTEAEAHMLLKNERDSTIQNIFFHYNLGNVPSTPFSTEVVLNLTNRIKSRLGE 407
Query: 301 LERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDS 360
LE DL DKKKS+E AL AWD Y+DANDRWK+IEAQK+AK EIK GI K I+EKE ERDS
Sbjct: 408 LEMDLLDKKKSNETALSTAWDCYMDANDRWKSIEAQKRAKDEIKMGISKRIEEKEIERDS 467
Query: 361 FELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNRE 420
FE +IS +++ DERE ++++E+ERKT Q +ER FE I QKQ E+++++ KIK LNRE
Sbjct: 468 FEFEISTVDVKQTDEREKQVQVELERKTKQNSERGFESKIEQKQHEIYSLEHKIKTLNRE 527
Query: 421 KDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQA 480
+DV+AGD+EDRVKL+LKK E EN KKKHKKIIDE KD+IR VLKGRLP ++D+K+EI QA
Sbjct: 528 RDVMAGDAEDRVKLSLKKTEQENLKKKHKKIIDECKDRIRGVLKGRLPPEKDMKREIVQA 587
Query: 481 LRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQ 540
LR++ E+DDLS KSREA+KEVNMLQMKIQEV ++L KH KD +S+KR+IESKL++L Q+
Sbjct: 588 LRSIEREYDDLSLKSREAEKEVNMLQMKIQEVNNSLFKHNKDTESRKRYIESKLQALKQE 647
Query: 541 IFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEE 600
+ID Y K+L+SAK+KRD +K +YN+A+GMRQMF+PFE+ AR H CPCCER F+A+EE
Sbjct: 648 SVTIDAYPKLLESAKDKRDDRKREYNMANGMRQMFEPFEKRARQEHSCPCCERSFTADEE 707
Query: 601 DEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNL 660
F+KKQRVKA+S+ EH+K L++ESSNADS FQQLDKLR V+EEY KL+ E IP+AEK L
Sbjct: 708 ASFIKKQRVKASSTGEHLKALAVESSNADSVFQQLDKLRAVFEEYSKLTTEIIPLAEKTL 767
Query: 661 HELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEY 720
E TEEL QKS+A DDVLG+ AQIKADK+S+E LVQP+E ADR+FQEI +QKQ++DLEY
Sbjct: 768 QEHTEELGQKSEALDDVLGISAQIKADKDSIEALVQPLENADRIFQEIVSYQKQIEDLEY 827
Query: 721 MLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREE 780
LD RG GV+TMEEIQ ELS S+KD L ELEKLRD+Q YME D+S +Q RWH +REE
Sbjct: 828 KLDFRGLGVKTMEEIQSELSSLQSSKDKLHGELEKLRDDQIYMERDISCLQARWHAVREE 887
Query: 781 KVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKL 840
K KAAN LRDV KAEE+LE L EEK QLDLD K L EA GPLSKEKE+LLSDYND+K++
Sbjct: 888 KAKAANLLRDVTKAEEDLERLAEEKSQLDLDVKYLTEALGPLSKEKEQLLSDYNDMKIRR 947
Query: 841 NREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIR 900
N+EYEE AE+K N+QQE+E LLK + KI EY+DL+K ER ++QEK+ S+S+++SC+ R
Sbjct: 948 NQEYEELAEKKRNYQQEVEALLKASYKINEYHDLKKGERLDDIQEKQRLSDSQLQSCEAR 1007
Query: 901 TDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVST 960
+E+ EL+R KD++RNQDQ+RRNIEDNLNYR TKAKV++ EIESLEE++L IGG++
Sbjct: 1008 KNELAGELNRNKDLMRNQDQLRRNIEDNLNYRTTKAKVEELTREIESLEEQILNIGGIAA 1067
Query: 961 FETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLK 1020
E E+ K L ER+RLLSE+NRC+GT+SVY+++IS+N+++LKQAQYKDIDKRHFDQLIQLK
Sbjct: 1068 VEAEIVKILRERERLLSELNRCRGTVSVYESSISKNRVELKQAQYKDIDKRHFDQLIQLK 1127
Query: 1021 TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGA 1080
TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQD+DYIRIHSDSEGA
Sbjct: 1128 TTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDMDYIRIHSDSEGA 1187
Query: 1081 GTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL 1140
GTRSYSYKVLMQTGD ELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL
Sbjct: 1188 GTRSYSYKVLMQTGDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL 1247
Query: 1141 DGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200
DGPN+ESLA AL RIMEDRKGQENFQLIVITHDERFAQ+IGQRQHAEKYYRVAKDD QHS
Sbjct: 1248 DGPNSESLAGALLRIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAKDDMQHS 1307
Query: 1201 IIEAQEIFD 1209
IIEAQEIFD
Sbjct: 1308 IIEAQEIFD 1316
>sp|P70388|RAD50_MOUSE DNA repair protein RAD50 OS=Mus musculus GN=Rad50 PE=1 SV=1
Length = 1312
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 360/1240 (29%), Positives = 641/1240 (51%), Gaps = 89/1240 (7%)
Query: 2 EYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQ 61
E+K +E V+ + GEKV LS +CA++DRE+ + +GVSK++L NVIF HQ+++NWPL
Sbjct: 110 EFKTLEGVITRMKH--GEKVSLSSKCAEIDREMISCLGVSKSVLNNVIFCHQEDSNWPLS 167
Query: 62 DPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESI 121
+ LK+KFD+IFSATRY KAL+ ++++ + Q Q++K + +L+ L+ K+ A ++R+ I
Sbjct: 168 EGKALKQKFDEIFSATRYIKALDTLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQI 227
Query: 122 SQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQ 181
+ + + + + ++ E ++ + +++ E L + K+ ++I + +R+ +Q +
Sbjct: 228 TSKEAQLASSQEIVRSYEDELEPLKNRLKEIEHNLSKIMKLDNEIKALESRK----KQME 283
Query: 182 KQYAALAEEIE----DTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNI 237
K + L +++E TDE+L + +N + V ++E + +RE ++ + + L Q
Sbjct: 284 KDNSELEQKMEKVFQGTDEQLNDLYHNHQRTVREKERRLVDCQRELEKLNKEARLLNQEK 343
Query: 238 DAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSR 297
E L +A H + RDS IQ L L PFS NF ++ R
Sbjct: 344 AELLVEQGRLQLQADRHQEHIRARDSLIQSLATHLELDGFERGPFSERQIKNFHELVKER 403
Query: 298 -------LSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEI---KAGI 347
S L DL DK+ ALK L DR + + K EI K
Sbjct: 404 QEREAKTASQLLSDLTDKE-----ALKQRQLDEL--RDRKSGLGRTIELKTEILTKKQSE 456
Query: 348 LKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSEL 407
L+H++ + +L+ S+ + +D+ K E+ + + + + Q+E
Sbjct: 457 LRHVRSELQ-----QLEGSSDRILELDQELTKAERELSKAEKNSSIETLKAEVMSLQNEK 511
Query: 408 FAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRL 467
+D+ ++ L++E + L + R ++ + + + ++ +KI + D++ +L G
Sbjct: 512 ADLDRSLRKLDQEMEQLNHHTTTRTQMEMLTKDKTDKDEQIRKIKSRHSDELTSLL-GYF 570
Query: 468 PLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLS---KHRKDVD 524
P + L+ D L SKS KE+N + ++ ++ L+ +++ ++
Sbjct: 571 PNKKQLE--------------DWLHSKS----KEINQTRDRLAKLNKELASAEQNKNHIN 612
Query: 525 SKKRFIESKLESLNQQIFSIDTYQKV-LDSAKEKRDVQKSKYNIA--DGMRQMFDPF--E 579
++ + E +L S ++F + Q + D + K +++KS A G ++ F +
Sbjct: 613 NELKKKEEQLSSYEDKLFDVCGSQDLESDLGRLKEEIEKSSKQRAMLAGATAVYSQFITQ 672
Query: 580 RVARAHHVCPCCERPFSAEEE-DEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKL 638
CP C+R F E E E + + K + + +K E + ++ L
Sbjct: 673 LTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELKKKERRRDEMLGL 732
Query: 639 RMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPV 698
V + + L ++ IP L + ++ + ++ +L I ++ES +V + V
Sbjct: 733 VPVRQSIIDLKEKEIPELRNRLQSVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDV 792
Query: 699 ETADRLFQEIQLWQKQVDDLEYMLDSRG---QGV---RTMEEIQLELSGSLSTKDNLQNE 752
+R +Q ++ D+E + + QGV RT++++ E D + ++
Sbjct: 793 TIMER-------FQMELKDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHRLDTVTSK 845
Query: 753 LEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDE 812
+E R + + + +++ + + L+ EK++ A L+ ++ EE+ L E L+ +
Sbjct: 846 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIATNLQRRQQMEEQSVELSTEVQSLNREI 905
Query: 813 KLLAEASGPLSKEKEKLLSDYNDLKVKLNREY--EEQAEQKIN-FQQEIEMLLKIASKIK 869
K E PL EKL + +L ++R++ + A+ KIN +++++ + I+
Sbjct: 906 KDAKEQISPLETALEKLQQEKEEL---IHRKHTSNKMAQDKINDIKEKVKNIHGYMKDIE 962
Query: 870 EYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNL 929
Y KD+ K+ + + + ++ C+ ++I ++ + + Q R ++DNL
Sbjct: 963 NYIQDGKDDYKKQKETELNGVAVQLNECEKHREKINKDMGTMRQDIDTQKIQERWLQDNL 1022
Query: 930 NYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLER--DRLLSEVNRCQGTMS 987
R+ + D+ E ++ + ++G + + + LE D + + G
Sbjct: 1023 TLRKRR---DELKEVEEEPKQHLKEMGQMQVLQMKNEHQKLEENIDTIKRNHSLALGRQK 1079
Query: 988 VYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMK 1047
Y+ I K +L++ Q++D ++++ + +I ++TTE+ NKDLD YY LD+A+M+FH+MK
Sbjct: 1080 GYEDEILHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMK 1139
Query: 1048 MEEINKIIRELWQQTYRGQDIDYIRIHSD-----SEGAGTRSYSYKVLMQTGDAELEMRG 1102
MEEINKIIR+LW+ TYRGQDI+YI I SD S R+Y+Y+V+M GD L+MRG
Sbjct: 1140 MEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRG 1199
Query: 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLD N ESLA AL I++ R Q
Sbjct: 1200 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQ 1259
Query: 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202
NFQL+VITHDE F +L+G+ ++ EK+YRV K+ Q S I
Sbjct: 1260 RNFQLLVITHDEDFVELLGRSEYVEKFYRVKKNMDQCSEI 1299
>sp|Q92878|RAD50_HUMAN DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1
Length = 1312
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 366/1242 (29%), Positives = 645/1242 (51%), Gaps = 93/1242 (7%)
Query: 2 EYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQ 61
E+K +E V+ T H GEKV LS +CA++DRE+ + +GVSKA+L NVIF HQ+++NWPL
Sbjct: 110 EFKTLEGVI-TRTKH-GEKVSLSSKCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLS 167
Query: 62 DPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESI 121
+ LK+KFD+IFSATRY KALE ++++ + Q Q++K Y+++L+ L+ K+ A ++R+ I
Sbjct: 168 EGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQYKEKACEIRDQI 227
Query: 122 SQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQ 181
+ + + + K ++ E + + +++ E L + K+ ++I + +R+ +Q +
Sbjct: 228 TSKEAQLTSSKEIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALDSRK----KQME 283
Query: 182 KQYAALAEEIE----DTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNI 237
K + L E++E TDE+L + +N + V ++E + RE ++ + + L Q
Sbjct: 284 KDNSELEEKMEKVFQGTDEQLNDLYHNHQRTVREKERKLVDCHRELEKLNKESRLLNQEK 343
Query: 238 DAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSR 297
E L +A H + RDS IQ L + L PFS NF +R
Sbjct: 344 SELLVEQGRLQLQADRHQEHIRARDSLIQSLATQLELDGFERGPFSERQIKNFHKLVR-- 401
Query: 298 LSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAK------MEIKAGILKHI 351
ER + K +++L A L + K I+ + K +E+K+ IL
Sbjct: 402 ----ERQEGEAKTANQLMNDFAEKETL----KQKQIDEIRDKKTGLGRIIELKSEILSK- 452
Query: 352 KEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFA-- 409
K+ E + +ELQ + I E + ++ I+ ER +L++ E N+ + E+ +
Sbjct: 453 KQNELKNVKYELQQLEGSSDRILELDQEL-IKAER---ELSKAEKNSNVETLKMEVISLQ 508
Query: 410 -----MDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLK 464
+D+ ++ L++E + L + R ++ + + + ++ +KI + D++ +L
Sbjct: 509 NEKADLDRTLRKLDQEMEQLNHHTTTRTQMEMLTKDKADKDEQIRKIKSRHSDELTSLL- 567
Query: 465 GRLPLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLS---KHRK 521
G P + L+ D L SKS KE+N + ++ ++ L+ +++
Sbjct: 568 GYFPNKKQLE--------------DWLHSKS----KEINQTRDRLAKLNKELASSEQNKN 609
Query: 522 DVDSKKRFIESKLESLNQQIFSIDTYQKV---LDSAKEKRDVQKSKYNIADGMRQMFDPF 578
++++ + E +L S ++F + Q LD KE+ + + + G ++ F
Sbjct: 610 HINNELKRKEEQLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLAGATAVYSQF 669
Query: 579 --ERVARAHHVCPCCERPFSAEEE-DEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQL 635
+ CP C+R F E E E + + K + + +K E + ++
Sbjct: 670 ITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELKKKEKRRDEM 729
Query: 636 DKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLV 695
L + + + L ++ IP L + ++ + ++ +L I ++ES +V +
Sbjct: 730 LGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCL 789
Query: 696 QPVETADRLFQEIQLWQKQVDDLEYMLDSRG---QGV---RTMEEIQLELSGSLSTKDNL 749
V +R +Q ++ D+E + + QG+ RT++++ E D +
Sbjct: 790 TDVTIMER-------FQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLDTV 842
Query: 750 QNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLD 809
+++E R + + + +++ + L+ EK++ + L+ ++ EE+ L E L
Sbjct: 843 SSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQSLY 902
Query: 810 LDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKIN-FQQEIEMLLKIASKI 868
+ K E PL EK + +L K N + A+ K+N +++++ + I
Sbjct: 903 REIKDAKEQVSPLETTLEKFQQEKEELINKKNTS-NKIAQDKLNDIKEKVKNIHGYMKDI 961
Query: 869 KEYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDN 928
+ Y KD+ K+ + + ++ +++ C+ ++I ++ + + Q R ++DN
Sbjct: 962 ENYIQDGKDDYKKQKETELNKVIAQLSECEKHKEKINEDMRLMRQDIDTQKIQERWLQDN 1021
Query: 929 LNYRETKAKVDKFASEIESLEERVLK-IGGVSTFETELGKHLLER--DRLLSEVNRCQGT 985
L R K ++ E+E ++ LK +G + + + LE D + N G
Sbjct: 1022 LTLR----KRNEELKEVEEERKQHLKEMGQMQVLQMKSEHQKLEENIDNIKRNHNLALGR 1077
Query: 986 MSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHT 1045
Y+ I K +L++ Q++D ++++ + +I ++TTE+ NKDLD YY LD+A+M+FH+
Sbjct: 1078 QKGYEEEIIHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHS 1137
Query: 1046 MKMEEINKIIRELWQQTYRGQDIDYIRIHSD-----SEGAGTRSYSYKVLMQTGDAELEM 1100
MKMEEINKIIR+LW+ TYRGQDI+YI I SD S R+Y+Y+V+M GD L+M
Sbjct: 1138 MKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDM 1197
Query: 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160
RGRCSAGQKVLASLIIRLALAETFCLNCGI+ALDEPTTNLD N ESLA AL I++ R
Sbjct: 1198 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRS 1257
Query: 1161 GQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202
Q NFQL+VITHDE F +L+G+ ++ EK+YR+ K+ Q S I
Sbjct: 1258 QQRNFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEI 1299
>sp|Q9JIL8|RAD50_RAT DNA repair protein RAD50 OS=Rattus norvegicus GN=Rad50 PE=1 SV=1
Length = 1312
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 363/1239 (29%), Positives = 638/1239 (51%), Gaps = 87/1239 (7%)
Query: 2 EYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQ 61
E+K +E V+ I GEKV LS +CA++DRE+ + +GVSK++L NVIF HQ+++NWPL
Sbjct: 110 EFKTLEGVITRIKH--GEKVSLSSKCAEIDREMISCLGVSKSVLNNVIFCHQEDSNWPLS 167
Query: 62 DPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESI 121
+ LK+KFD+IFSATRY KAL+ ++++ + Q Q++K + +L+ L+ K+ A ++R+ I
Sbjct: 168 EGKALKQKFDEIFSATRYIKALDTLRQVRQTQGQKVKECQTELKYLRQNKEKACEIRDQI 227
Query: 122 SQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQ 181
+ + + + + ++ E ++ + +++ E L + ++ ++I + +R+ +Q +
Sbjct: 228 TSKEAQLASSREIVKAYENELEPLKNRLKEIEHNLSKIMRLDNEIKALDSRK----KQME 283
Query: 182 KQYAALAEEIE----DTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNI 237
K + L +++E TDE+L + +N + V ++E + +RE + + + L Q
Sbjct: 284 KDNSELEQKMEKVFQGTDEQLNDLYHNHQRTVREKERRLVDCQRELEKLSKEARLLNQER 343
Query: 238 DAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSR 297
E L +A H + RDS IQ L A L PFS NF +R R
Sbjct: 344 AELLVEQGRLQLQADRHQEHIRARDSLIQSLAAHLELDGFERGPFSERQIKNFHELVRER 403
Query: 298 -------LSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGIL-K 349
S L DL DK+ ALK D ++ ++ +E+K IL K
Sbjct: 404 QEREAKTASQLLSDLTDKE-----ALKQR------QMDEMRDKKSGLGRMIELKTEILTK 452
Query: 350 HIKEKENERDSF-ELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELF 408
E N R+ +L+ S+ + +D+ K E+ + + + I QSE
Sbjct: 453 KQTELRNVRNELQQLEGSSDRILELDQELTKAERELSKAEKNSSIETLKAEILNLQSEKA 512
Query: 409 AMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLP 468
+D+ ++ L++E + L + R ++ + + + ++ +KI + D++ +L G P
Sbjct: 513 DLDRNLRKLDQEMEQLNHHTTTRTQMEMLTKDKTDKDEQIRKIKSRHSDELTSLL-GYFP 571
Query: 469 LDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLS---KHRKDVDS 525
+ L+ D L SKS KE+N + ++ ++ L+ +++ +++
Sbjct: 572 NKKQLE--------------DWLHSKS----KEINQTRDRLAKLNKELASAEQNKNHINN 613
Query: 526 KKRFIESKLESLNQQIFSIDTYQKV---LDSAKEKRDVQKSKYNIA--DGMRQMFDPF-- 578
+ + E +L S ++F + Q LD KE D++KS A G ++ F
Sbjct: 614 ELKKKEEQLSSYEDKLFDVCGSQDFESDLDRLKE--DIEKSSKQRAMLAGATAVYSQFIT 671
Query: 579 ERVARAHHVCPCCERPFSAEEE-DEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDK 637
+ CP C+R F E E E + + K + + +K E + ++
Sbjct: 672 QLTDENQSCCPGCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELKKKERRRDEMLG 731
Query: 638 LRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQP 697
L + + + L ++ IP L + ++ + ++ +L + ++ES +V +
Sbjct: 732 LVPMRQSIIDLKEKEIPELRNRLQSVNRDIQRLKNDIEEQETLLGTVMPEEESAKVCLTD 791
Query: 698 VETADRLFQEIQLWQKQVDDLEYMLDSRG---QGV---RTMEEIQLELSGSLSTKDNLQN 751
V +R +Q ++ D+E + + QGV RT++++ E D + +
Sbjct: 792 VTIMER-------FQMELKDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHKLDTVSS 844
Query: 752 ELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLD 811
++E R + + + +++ + + L+ EK++ A L+ ++ EE+ L E L+ +
Sbjct: 845 KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIATNLQRRQQMEEQTVELSTEVQSLNRE 904
Query: 812 EKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKIN-FQQEIEMLLKIASKIKE 870
K E PL EKL + +L + N + A+ KIN +++++ + I+
Sbjct: 905 IKDAKEQINPLEIALEKLQQEKEELIHRKNTS-NKMAQDKINDIKEKVKNIHGYMKDIEN 963
Query: 871 YYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLN 930
Y KD+ K+ + + ++ ++ C ++I E+ + + + R ++DNL
Sbjct: 964 YIQDGKDDYKKQKETELNEVVIQLNECDKHKEKINKEMGTMRQDIDTKKIQERWLQDNLT 1023
Query: 931 YRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLER--DRLLSEVNRCQGTMSV 988
R+ + ++ + ++ + ++G + + + LE D + + G
Sbjct: 1024 LRKRREELKEVEE---ERKQHLKEMGQMQVLQMKNEHQKLEENIDTIKRNHSLALGRQKG 1080
Query: 989 YQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKM 1048
Y+ I K +L++ Q++D ++++ + +I ++TTE+ NKDLD YY LD A+M+FH+MKM
Sbjct: 1081 YEEEILHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDHAIMKFHSMKM 1140
Query: 1049 EEINKIIRELWQQTYRGQDIDYIRIHSD-----SEGAGTRSYSYKVLMQTGDAELEMRGR 1103
EEINKIIR+LW+ TYRGQDI+YI I SD S R+Y+Y+V+M GD L+MRGR
Sbjct: 1141 EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR 1200
Query: 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLD N ESLA AL I++ R Q
Sbjct: 1201 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR 1260
Query: 1164 NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202
NFQL+VITHDE F +L+G+ ++ EK+YRV K+ Q S I
Sbjct: 1261 NFQLLVITHDEDFVELLGRSEYVEKFYRVKKNIDQCSEI 1299
>sp|Q54CS9|RAD50_DICDI DNA repair protein RAD50 OS=Dictyostelium discoideum GN=rad50 PE=3
SV=1
Length = 1351
Score = 312 bits (800), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 217/637 (34%), Positives = 355/637 (55%), Gaps = 37/637 (5%)
Query: 588 CPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVK 647
C C+ + E FV +K L +E SN+ ++ +KL + + +
Sbjct: 732 CSLCKNEMNGNELTSFVHTLETHCNDIPNQLKQLKIEISNSKIQLEKFNKLLPIIVKREE 791
Query: 648 LSKETIPV---AEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPV----ET 700
L +++IP ++KNL L+Q+ ++ + VL QI++ ES VL Q V +
Sbjct: 792 LIEKSIPELKESQKNL------LEQQLKSNEMVLEKQNQIES-LESQSVLYQQVTLVFQY 844
Query: 701 ADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQ 760
D+ Q IQ + ++ E + + +RT+EE+ +L Q +L+ + E
Sbjct: 845 IDQTKQSIQSIESEIQKEEKEIMKQSSDLRTIEEVDKDLEIQ-------QEQLKTIEKEI 897
Query: 761 RYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKG-------QLDLDEK 813
N N QI + + N L +K A ++HL + K QL L+ +
Sbjct: 898 SNFTNKQKNDQIGIFEKERQLISIKNQLTTIKSASGIIDHLRDTKKELQSNNQQLQLEIE 957
Query: 814 LLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYD 873
L ++ + + ++L +++ L+++ ++ + +++K F ++ + + SKI + +
Sbjct: 958 NLQQSIDQSNNDAKQLENEFQQLEIEFEKKIDAYSKEKNTFSVRLDSINSLQSKILDPSE 1017
Query: 874 LRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRN---QDQIRRNIEDNLN 930
L K + E+QEK + ES + + + + L+ I +N +D +R I DN++
Sbjct: 1018 LCK--QLNEIQEKNQELESNLSTL---SQDYLIGQQHISTIQQNLSSKDITKRAISDNIS 1072
Query: 931 YRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQ 990
+R+ K V++ +I S + ++K S E + K E + L S+ ++ G +V Q
Sbjct: 1073 FRQHKNNVEQIIRQI-SRKNELIKEMMQSQLEIDSNKLEQEINSLKSKFDQITGQTAVLQ 1131
Query: 991 TNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEE 1050
+ I+ N+ +L + YK+ID + D LI+L+TTE KDLD+YY ALDK+LM++HT+KM+E
Sbjct: 1132 SQINSNRQELSKPTYKNIDDVNKDLLIKLQTTETVGKDLDKYYKALDKSLMKYHTLKMDE 1191
Query: 1051 INKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKV 1110
IN+ I+E+WQ TY+G DID I I S+ G ++ +Y+V+M GD EL+MRGRCSAGQKV
Sbjct: 1192 INRSIKEIWQTTYKGSDIDTIEIRSEESGTANKTINYRVVMIKGDVELDMRGRCSAGQKV 1251
Query: 1111 LASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVI 1170
LA L+IRLALAE FC NCGILALDEPT++LD N ES A +L I+E RK Q+ FQLI+I
Sbjct: 1252 LACLVIRLALAENFCSNCGILALDEPTSHLDRANIESFANSLLNIIESRKSQKGFQLIII 1311
Query: 1171 THDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEI 1207
THDE F Q + + + + Y+RV K+ +QHS +E +EI
Sbjct: 1312 THDEEFVQYLSRGNYCDYYWRVTKNANQHSHLERKEI 1348
>sp|Q9UTJ8|RAD50_SCHPO DNA repair protein rad50 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad50 PE=1 SV=3
Length = 1285
Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 229/672 (34%), Positives = 352/672 (52%), Gaps = 116/672 (17%)
Query: 585 HHVCPCCERPFSAEEEDEFVKKQR----VKAASSAE---HMKVLSLESSNADSYFQQLDK 637
H C C+R EEE FV+ V + SAE H++ L+ F+ L +
Sbjct: 671 QHACQLCQRSLDKEEEKLFVEHCHSMIDVIPSKSAEVYSHLETLT-------KTFKNLSE 723
Query: 638 LRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQP 697
+ +++E I + +K L E EL D+ G L + K+ ++ +
Sbjct: 724 AKPIFDE--------IELLDKRLSETKTELS-------DLQGDLQGLDIRKDEIQSELDT 768
Query: 698 VETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTM----EEIQLELSGSLS--TKDNLQN 751
+ +++QL K + +LE + +RT+ E +++EL S++ D +
Sbjct: 769 LYLRRANLEKLQLLVKDISNLE-------EEIRTIDRETEVLRIELPSSIAHHNLDEIYA 821
Query: 752 ELEKLRDEQRYMENDLSNIQIRWHTLR-----------EEKVKA------ANTL----RD 790
E EKL +++ Y+ + ++ + + E+K+K N L +D
Sbjct: 822 EREKLLEKRGYLRKQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKD 881
Query: 791 VKKAEEELEHLMEEKGQLDLDEKLLAEAS--GPLSKEKEKLLSDYNDLKVKLNREYEEQA 848
+ K+ E+ + +++K L++ K ++A L E EKL +D ++ K E E
Sbjct: 882 INKSSEDCD--LQKKKLLEVSSKQGSQAPFLNELESEYEKLEADIQEMAQKSRTEILEAN 939
Query: 849 E--QKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVK--SCKI-RTDE 903
E ++N + E+ + +++K FK ++EKKS EV+ + KI TD+
Sbjct: 940 EYLHQLN-EWNSELRIDVSTK------------FKCIKEKKSNIGEEVRIIASKIESTDD 986
Query: 904 ILVEL-DRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEI------------ESLEE 950
L +L +R D+ R ++ RN DNL R ++++ ++ ES E
Sbjct: 987 NLRKLQERLADL-RTRE---RNASDNLRLRALMRQLEEAVTQKNYLLSQQSHDDRESFRE 1042
Query: 951 RVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDK 1010
R+ +++ G ER LL E + + + I+++K +L ++KD D+
Sbjct: 1043 RM------QILKSKYGALNAERAGLLGECKQLENS-------ITKDKEEL-NMEFKDADE 1088
Query: 1011 RHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDY 1070
R QLI+ KTT AN+DL +Y ALD A+M+ H+MKM EIN+I+ ELW+QTY G DID
Sbjct: 1089 RFRRQLIKTKTTGKANEDLGKYAKALDVAIMQLHSMKMNEINRIVDELWKQTYCGTDIDT 1148
Query: 1071 IRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGI 1130
I I SDSEG G R+Y+Y+V M GDAEL+MRGRCSAGQKVLA +IIRLALAE +NCGI
Sbjct: 1149 ILIRSDSEGKGNRTYNYRVCMVKGDAELDMRGRCSAGQKVLACIIIRLALAECLGVNCGI 1208
Query: 1131 LALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYY 1190
LALDEPTTNLD N SLA L RI+E R+ Q NFQLIVITHDE+F +L+ + YY
Sbjct: 1209 LALDEPTTNLDEENICSLAKNLSRIVEFRRKQANFQLIVITHDEQFIRLVNSDAYCSYYY 1268
Query: 1191 RVAKDDHQHSII 1202
RV +D +Q S+I
Sbjct: 1269 RVKRDTNQKSMI 1280
>sp|P12753|RAD50_YEAST DNA repair protein RAD50 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD50 PE=1 SV=1
Length = 1312
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 222/680 (32%), Positives = 349/680 (51%), Gaps = 81/680 (11%)
Query: 571 MRQMFDPFER----VARAHHVCPCCERPFSAEEEDEFVKK--QRVKAASSAEHMKVLSLE 624
M Q F R +A C C R F E + F K Q +K + A K L
Sbjct: 666 MHQTTLEFNRKALEIAERDSCCYLCSRKF---ENESFKSKLLQELKTKTDANFEKTLKDT 722
Query: 625 SSNADSYFQQLDKLRMVYEEYVKLS--KETIPVAEKNLHELTEELDQKSQAFDDVLGVLA 682
N Y L LR++ + + L+ E I ++K L + EE D++
Sbjct: 723 VQNEKEY---LHSLRLLEKHIITLNSINEKIDNSQKCLEKAKEETKTSKSKLDELEVDST 779
Query: 683 QIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGS 742
++K +KE E ++P L ++ +K++ DLE +T+ E ELS
Sbjct: 780 KLKDEKELAESEIRP------LIEKFTYLEKELKDLE-------NSSKTISE---ELSIY 823
Query: 743 LSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTL---REEKVKAANTLRDVKKAEE--- 796
+++D +Q +++LRD+QR M + L ++ L ++EKV+ + + ++ K +E
Sbjct: 824 NTSEDGIQT-VDELRDQQRKMNDSLRELRKTISDLQMEKDEKVRENSRMINLIKEKELTV 882
Query: 797 -ELEHLMEEKGQLD------------LDEKL--LAEASGPLSKEKEKLLSDYNDLKVKLN 841
E+E + +K +D +D ++ L L +K++ S + KVK
Sbjct: 883 SEIESSLTQKQNIDDSIRSKRENINDIDSRVKELEARIISLKNKKDEAQSVLD--KVKNE 940
Query: 842 REYEEQAEQKI--NFQQEIEMLLKIASKIKEYYDLRKDE---RFKELQEKKSQSESEVKS 896
R+ + + +QK + + I+ I +++ ++ DE KEL+ K+Q +
Sbjct: 941 RDIQVRNKQKTVADINRLIDRFQTIYNEVVDFEAKGFDELQTTIKELELNKAQMLELKEQ 1000
Query: 897 CKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIG 956
++++E+ E + D N ++ +N++ NL E K+++ SEI L+
Sbjct: 1001 LDLKSNEVNEEKRKLAD--SNNEE--KNLKQNLELIELKSQLQHIESEISRLD------- 1049
Query: 957 GVSTFETELGKHLLERDRL------LSEVNRCQ-GTMSVYQTNISRNKIDLKQAQYKDID 1009
V E E K+ E RL LS N + G M Q I L+ YKDI+
Sbjct: 1050 -VQNAEAERDKYQEESLRLRTRFEKLSSENAGKLGEMKQLQNQIDSLTHQLR-TDYKDIE 1107
Query: 1010 KRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDID 1069
K + + ++L+T D+D Y ALD A+M++H +KM++IN+II ELW++TY G DID
Sbjct: 1108 KNYHKEWVELQTRSFVTDDIDVYSKALDSAIMKYHGLKMQDINRIIDELWKRTYSGTDID 1167
Query: 1070 YIRIHSD--SEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLN 1127
I+I SD S +SY+Y+V+M D EL+MRGRCSAGQKVLAS+IIRLAL+ETF N
Sbjct: 1168 TIKIRSDEVSSTVKGKSYNYRVVMYKQDVELDMRGRCSAGQKVLASIIIRLALSETFGAN 1227
Query: 1128 CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAE 1187
CG++ALDEPTTNLD N ESLA +LH I+ R+ Q+NFQLIVITHDE+F + +
Sbjct: 1228 CGVIALDEPTTNLDEENIESLAKSLHNIINMRRHQKNFQLIVITHDEKFLGHMNAAAFTD 1287
Query: 1188 KYYRVAKDDHQHSIIEAQEI 1207
+++V +DD Q S IE +I
Sbjct: 1288 HFFKVKRDDRQKSQIEWVDI 1307
>sp|Q9W252|RAD50_DROME DNA repair protein RAD50 OS=Drosophila melanogaster GN=rad50 PE=2
SV=4
Length = 1318
Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 186/303 (61%), Gaps = 13/303 (4%)
Query: 907 ELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERV--LKIGGVSTFETE 964
EL+ K NQ + R+++DN ++ + K K + L++++ L VS +
Sbjct: 1007 ELETIKTECSNQQTVERDLKDNRELKQLEDKEAKLRESCQVLDKQLGNLDFHSVSKEKVN 1066
Query: 965 LGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEM 1024
L K +RD+ G + + +++ + ++ + ++K+ K +++ T +
Sbjct: 1067 LTK---QRDKATVRKGELLGQLGEIHSQVNKLQREIDEPRFKESLKNFRKANYEIEVTRL 1123
Query: 1025 ANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSD---SEGAG 1081
+DL +Y AL+ AL++FH+ KME IN++IRE W++ YRG DIDYI++ +D S+ +
Sbjct: 1124 CIEDLGQYRLALEWALIQFHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSSDASA 1183
Query: 1082 TR--SYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTN 1139
R +Y+Y+V+ +E+EMRGRCSAGQ+VLASLIIRLALAETF NCG+LALDEPTTN
Sbjct: 1184 DRRKTYNYRVVQSKNYSEIEMRGRCSAGQRVLASLIIRLALAETFSSNCGVLALDEPTTN 1243
Query: 1140 LDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199
LD N SL AL+ I+E+R+ Q NF LI+ITHDE F +G+ Y+RV +++
Sbjct: 1244 LDRANINSLCEALNCIVEERQSQSNFMLIIITHDENFVSSLGK---ITSYHRVFRNEECK 1300
Query: 1200 SII 1202
S+I
Sbjct: 1301 SVI 1303
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 34/241 (14%)
Query: 5 AIESVLQTINPHTG-------EKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEAN 57
+ E++ TIN TG ++ LS R D+D + MGVSKAI+ NV+F HQ++++
Sbjct: 111 SFETMDSTINFLTGAGQSKREKQDSLSGRSVDIDVAISDFMGVSKAIINNVLFCHQEDSS 170
Query: 58 WPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKL 117
WPL + LK+KFD IF T Y KAL+ I KL K+ +E+K + ++++ LK
Sbjct: 171 WPLDESKKLKEKFDAIFGITEYNKALDKIIKLRKEAMEELKIKEANIKHVAYLKQEMEVK 230
Query: 118 RESISQDQEKTEALKNQMQELEKSIQDIDDK---IHHTELTLKDL-----------RKMQ 163
++ + Q K +A+K Q E E+ ++ I+ + I + E + + +
Sbjct: 231 TLNLQKAQRKCDAIKAQCSECEEEMKPIEARLVEIRNVEFEIGKYQAQKVEMDTKHKNCK 290
Query: 164 DQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKR---ESDISKLE 220
DQIST+T + F +++ D+E+ N+ + KR E D+S+++
Sbjct: 291 DQISTLTLKIKKPFRGT----------LDELDQEISNFDQRMLEMRQKRTEVEGDLSQIK 340
Query: 221 R 221
R
Sbjct: 341 R 341
>sp|Q8SRK6|RAD50_ENCCU DNA repair protein RAD50 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RAD50 PE=1 SV=1
Length = 1247
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 137/193 (70%), Gaps = 3/193 (1%)
Query: 1016 LIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHS 1075
I++K E++ DLD+ ALDKA++ FHT K+EE+N +++LW TYRG D+D+I+I +
Sbjct: 1047 FIEVKALELSCMDLDKCIQALDKAIVDFHTSKLEEVNATLKDLWTNTYRGDDVDWIKIKT 1106
Query: 1076 DSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDE 1135
+S +G R+Y+YKV+ G EL+MRGR SAGQK++AS++IRLALA++F +C +LALDE
Sbjct: 1107 ES--SGQRTYNYKVVFVKGGVELDMRGRSSAGQKMIASILIRLALADSFASSCSVLALDE 1164
Query: 1136 PTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195
PTTNLD N ESLA L R++ + +FQLIVITHDE F QL+ R E +YR+++
Sbjct: 1165 PTTNLDRDNIESLAFTLSRVISRHRRDADFQLIVITHDEDFVQLL-SRGGPEYFYRLSRS 1223
Query: 1196 DHQHSIIEAQEIF 1208
+ S+I I+
Sbjct: 1224 ESGDSMIVRHSIY 1236
>sp|C6KSQ6|RAD50_PLAF7 Probable DNA repair protein RAD50 OS=Plasmodium falciparum (isolate
3D7) GN=PFF0285c PE=3 SV=1
Length = 2236
Score = 199 bits (507), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 143/211 (67%), Gaps = 6/211 (2%)
Query: 999 DLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIREL 1058
D+K +IDK + ++I++ + KDL ++ + D+A+++FH++KM+EIN I+ L
Sbjct: 2022 DIKSETLINIDKEYKKKIIEIFVYKNLIKDLQNFHFSFDQAIIKFHSLKMQEINLSIKNL 2081
Query: 1059 WQQTYRGQDIDYIRIHSDSEGAGT------RSYSYKVLMQTGDAELEMRGRCSAGQKVLA 1112
W++ Y DIDYI I SD + T RSY+Y+V+M + EL+M+GRCS+GQKVL+
Sbjct: 2082 WRRVYNSADIDYIYIKSDIQTEPTDKSSQRRSYNYRVVMVKDNCELDMKGRCSSGQKVLS 2141
Query: 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITH 1172
S+IIRLALAE+F + CGILALDEPTTNLD N+ +LA+ L I+E RK +FQLI+ITH
Sbjct: 2142 SIIIRLALAESFSIKCGILALDEPTTNLDKANSRNLASLLANIVELRKSSSSFQLILITH 2201
Query: 1173 DERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203
D F ++ Q +Y++ K++ +S IE
Sbjct: 2202 DNYFVDILSQYGLTNCFYKIKKNNLGYSKIE 2232
Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 18 GEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSAT 77
G+ + ++ +C D++ +P LMGVSKA+LENVIF H DE WP + +KKKFD++F
Sbjct: 129 GDDLIITNKCVDINNHIPKLMGVSKALLENVIFCHHDENLWPFSESIKIKKKFDELFGDD 188
Query: 78 RYTKALEVIKKLHK 91
++K LE + K K
Sbjct: 189 HFSKILEELLKCKK 202
>sp|O44199|RAD50_CAEEL DNA repair protein rad-50 OS=Caenorhabditis elegans GN=rad-50 PE=2
SV=1
Length = 1298
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 86/148 (58%), Gaps = 7/148 (4%)
Query: 23 LSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKA 82
LS + D + + +GV +A+ + VIF HQ+++ WPL +P LKK+FDDIF T++ KA
Sbjct: 128 LSSKVCDFNTALLKHLGVPRAVFKYVIFCHQEDSTWPLSEPKELKKRFDDIFQLTKFVKA 187
Query: 83 LEVIKKLHKDQAQEIKTYKLKLENLQT-LKDAAY------KLRESISQDQEKTEALKNQM 135
E +KK+ D +E++T+++ + +T ++D + IS+ +E+T+ LK +
Sbjct: 188 QERMKKIVLDFKKEMQTHEMSKQLYETHVRDKLVARQNQEECERKISKRKEETDELKERK 247
Query: 136 QELEKSIQDIDDKIHHTELTLKDLRKMQ 163
+K I+++ IH E TL +K +
Sbjct: 248 ANGQKKIEEMRTSIHELEDTLTSFKKTE 275
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair Rad50 ATPase OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=rad50 PE=3 SV=1
Length = 876
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162
R S G+K++ L +RLALA + LDEPT +LD + E LA AL R ++ KG+
Sbjct: 781 RMSGGEKIIIGLALRLALAMVGSSFAPFIMLDEPTVHLDAEHRERLAQAL-RELDLGKGR 839
Query: 1163 ENFQLIVITHDE 1174
Q IV+THDE
Sbjct: 840 VR-QAIVVTHDE 850
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 118/247 (47%), Gaps = 5/247 (2%)
Query: 18 GEKVCLSYRCADMDREV-PALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKF-DDIFS 75
G KV S R D+DREV AL GV + + +++ Q E ++ +K+ D
Sbjct: 103 GWKVVASGRAEDVDREVMNALGGVDRDVFREAVYIRQGEIAKLVEATREERKRIVDRTLG 162
Query: 76 ATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQM 135
+ KA E +L + +++T++ ++ +L+ K ++ + + + + + L+ ++
Sbjct: 163 LAEFKKAREQAHELLRVAEAKLETFRERVRDLKGSKKELKRVERELEELKREVKELEPEV 222
Query: 136 QELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTL--FEQQQKQYAALAEEIED 193
+EL++ + ++ + E +LR ++++I ++ RR L ++ K+ + + D
Sbjct: 223 EELKERLNELREAKREFERLEGELRLLENKIESLKGRRDDLRKLVEEGKEAERELQRLGD 282
Query: 194 TDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGA 253
+++ +N E + +R ++ L + + +++ E+ ++ E+ L EAG
Sbjct: 283 VPSKVRELENE-EAELRRRIEELRNLLDDLRSLRNRLESAEEELEGVKRELEELKDEAGV 341
Query: 254 HMSRMNE 260
R+ E
Sbjct: 342 DPERLVE 348
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair Rad50 ATPase OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=rad50 PE=3 SV=1
Length = 864
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 59/253 (23%)
Query: 928 NLNYRETKAKVDKFASEIESLEERVLKIGG-VSTFETELGKHLLERDRLLSEVNRCQGTM 986
NL+ +E + + + E+ESLE+ + +I ++ +E +L +R+++++ +N+ +
Sbjct: 648 NLSLKEKENRKSRIEGELESLEKDIEEISNRIANYELQLK----DREKIINAINKLEKIR 703
Query: 987 SVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTM 1046
S + +R I + T ++ +L+ + D + +
Sbjct: 704 SA-------------------LGERKLQSYIIMTTKQLIENNLNDIISKFD---LSIKNV 741
Query: 1047 KMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSA 1106
+ME + +T RG RS S +L+ T + S
Sbjct: 742 EME--------IMPKTGRG-----------------RSSSGDILVYTNSGDTLPIVSLSG 776
Query: 1107 GQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENF- 1165
G+++ S+ +RLA+A+ N LDEPT +LD L + R +E+
Sbjct: 777 GERIALSIALRLAIAKALMSNTNFFILDEPTIHLDDQRKAYLIEII------RAAKESVP 830
Query: 1166 QLIVITHDERFAQ 1178
Q+IV+THDE Q
Sbjct: 831 QIIVVTHDEEVVQ 843
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 114 AYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARR 173
AY L S+ + + + ++ +++ LEK I++I ++I + EL LKD K+ + I+ + R
Sbjct: 646 AYNL--SLKEKENRKSRIEGELESLEKDIEEISNRIANYELQLKDREKIINAINKLEKIR 703
Query: 174 STLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLERE 222
S L E++ + Y + T ++L +NN I++K + I +E E
Sbjct: 704 SALGERKLQSYIIM------TTKQL--IENNLNDIISKFDLSIKNVEME 744
>sp|Q96YR5|RAD50_SULTO DNA double-strand break repair Rad50 ATPase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rad50
PE=3 SV=2
Length = 879
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163
S G++V +L +RLA+A++ G L LDEPT NLD + L + +E
Sbjct: 787 LSGGERVSIALALRLAIAKSLMNEVGFLILDEPTVNLDEYRKKELIDIIRSTVEVVP--- 843
Query: 1164 NFQLIVITHDERFAQ 1178
Q+IV+THDE Q
Sbjct: 844 --QIIVVTHDEELLQ 856
>sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair Rad50 ATPase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=rad50 PE=3 SV=1
Length = 883
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161
G S G+++ L RLAL+ +L LDEPT LD L + R +
Sbjct: 789 GFLSGGERIALGLAFRLALSLYLAGEISLLILDEPTPYLDEERRRRLVDIMQRYL----- 843
Query: 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQ 1205
++ Q+IV++HDE + A++ RV+ ++ + EA+
Sbjct: 844 RKIPQVIVVSHDEEL------KDAADRVIRVSLENGVSVVREAE 881
>sp|P62134|RAD50_METMP DNA double-strand break repair Rad50 ATPase OS=Methanococcus
maripaludis (strain S2 / LL) GN=rad50 PE=3 SV=1
Length = 993
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 1105 SAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164
S G+++ SL +RL +++ C N + LDEPT LD ++L I
Sbjct: 906 SGGEQIAVSLALRLGISKAVCNNIECIILDEPTAYLDEDRRKNLLNIFKNIKTIN----- 960
Query: 1165 FQLIVITHDERFAQL 1179
Q+ +ITH + Q+
Sbjct: 961 -QMAIITHHQELEQI 974
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 134/313 (42%), Gaps = 63/313 (20%)
Query: 74 FSATRYTKALEVI---KKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEA 130
S K LE+I K+ K + EI ++KLK L+ K+ + K+ ESI + EK
Sbjct: 525 LSTESLKKQLEIILNKKEKMKVKLNEIDSFKLKYGELKEKKNYSLKVEESIIETTEKLNE 584
Query: 131 LKNQMQE---LEKSIQDIDDKIHHTE------------LTLKD----LRKMQDQISTMTA 171
L ++ E L I I++K+ + E LT D L K + +
Sbjct: 585 LTGKINEYSSLNDEISLIENKLKNLENDYKNCNYSSQFLTKNDESEFLTKKLELSKIIGD 644
Query: 172 RRSTLFEQQQKQYAALAEEIEDT----------DEELKNWKNNFEGIVAKRESDISKLER 221
S+ E ++K L +E+++T +ELKN +N+ + E + K E
Sbjct: 645 YDSSKIENEKKSLENLKDELKNTIYNLEREINLKKELKNIQNDISSKIGIVECYV-KWET 703
Query: 222 EKNDMDTKIKFLEQNID--------------AYTAEITNL-------LSEAGAHMSRMNE 260
EK+D + K+ ++N + Y+ EI NL ++E ++ E
Sbjct: 704 EKSDFENKLSECKENYEKYMESLAVLKNYSKTYSVEINNLNEFLNQKIAEKQQFCEKLLE 763
Query: 261 RDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAW 320
+ I+K N+ ++ P +E A I + +D+ R LE + S EL LK
Sbjct: 764 TRTEIEK-----NIQTVNYNPELHENAKRLYENILNEFNDILRTLE--RISSELKLKNEN 816
Query: 321 DSYLDANDRWKNI 333
SYL N++ +N+
Sbjct: 817 ISYL--NEKIQNL 827
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 166 ISTMTARRSTLFEQQQKQYA----ALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLER 221
IS +++ + Q + Y L E++E+T++E N +NN+ + +DI L
Sbjct: 515 ISIELSKKEKEYNQYKNTYIEEINNLNEKLEETNKEYTNLQNNYTNEINMLNNDIHMLNG 574
Query: 222 EKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKL 268
M+T+I L+ ++ +I L +E G S+++E + I L
Sbjct: 575 NIKTMNTQISTLKNDVHLLNEQIDKLNNEKGTLNSKISELNVQIMDL 621
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,311,480
Number of Sequences: 539616
Number of extensions: 17707342
Number of successful extensions: 108716
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 3978
Number of HSP's that attempted gapping in prelim test: 81102
Number of HSP's gapped (non-prelim): 16920
length of query: 1209
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1080
effective length of database: 121,958,995
effective search space: 131715714600
effective search space used: 131715714600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)