Query 000957
Match_columns 1209
No_of_seqs 343 out of 2916
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 11:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0962 DNA repair protein RAD 100.0 7E-128 2E-132 1142.6 130.6 1179 1-1208 107-1288(1294)
2 TIGR00606 rad50 rad50. This fa 100.0 2E-119 5E-124 1176.9 150.8 1186 2-1206 109-1302(1311)
3 COG1196 Smc Chromosome segrega 100.0 1.9E-41 4.2E-46 438.7 97.5 210 940-1207 946-1156(1163)
4 KOG0996 Structural maintenance 100.0 8E-40 1.7E-44 379.5 83.1 992 47-1201 225-1280(1293)
5 PRK02224 chromosome segregatio 100.0 5.8E-40 1.3E-44 421.7 88.5 241 935-1203 626-878 (880)
6 TIGR02169 SMC_prok_A chromosom 100.0 4.3E-39 9.3E-44 432.1 98.6 210 938-1207 953-1164(1164)
7 PRK03918 chromosome segregatio 100.0 1.5E-37 3.3E-42 400.9 88.5 148 26-175 109-256 (880)
8 PRK01156 chromosome segregatio 100.0 2.2E-36 4.7E-41 387.8 91.1 213 961-1205 679-894 (895)
9 KOG0933 Structural maintenance 100.0 9.8E-36 2.1E-40 339.5 79.4 939 103-1204 167-1168(1174)
10 KOG0018 Structural maintenance 100.0 2.3E-35 5E-40 340.6 76.2 962 51-1207 129-1139(1141)
11 TIGR02168 SMC_prok_B chromosom 100.0 5.1E-33 1.1E-37 375.1 103.3 184 1004-1207 983-1179(1179)
12 COG0419 SbcC ATPase involved i 100.0 1.3E-33 2.8E-38 358.6 90.1 96 1098-1205 810-907 (908)
13 KOG0964 Structural maintenance 100.0 3.4E-33 7.3E-38 317.1 82.2 988 51-1203 139-1182(1200)
14 TIGR00606 rad50 rad50. This fa 100.0 3.6E-29 7.8E-34 328.8 108.8 924 85-1037 183-1121(1311)
15 TIGR00618 sbcc exonuclease Sbc 100.0 6E-23 1.3E-27 265.5 98.0 86 23-108 121-207 (1042)
16 KOG0962 DNA repair protein RAD 100.0 8.6E-23 1.9E-27 245.9 89.4 1009 98-1153 195-1212(1294)
17 PRK10246 exonuclease subunit S 100.0 3.8E-22 8.3E-27 255.4 95.3 87 22-108 124-211 (1047)
18 COG1126 GlnQ ABC-type polar am 99.9 1.4E-24 3.1E-29 210.7 10.8 149 1047-1206 71-228 (240)
19 KOG0161 Myosin class II heavy 99.9 5.6E-12 1.2E-16 162.1 118.5 135 881-1017 1614-1751(1930)
20 PRK04863 mukB cell division pr 99.9 2.3E-12 5E-17 166.2 110.0 226 26-264 149-426 (1486)
21 COG1135 AbcC ABC-type metal io 99.9 5.8E-23 1.3E-27 210.6 10.5 153 1043-1205 73-233 (339)
22 COG1117 PstB ABC-type phosphat 99.8 3.9E-21 8.5E-26 185.6 11.2 147 1047-1206 82-240 (253)
23 KOG0250 DNA repair protein RAD 99.8 3E-14 6.5E-19 168.8 69.9 74 1099-1178 985-1059(1074)
24 TIGR02168 SMC_prok_B chromosom 99.8 8.3E-13 1.8E-17 178.9 95.2 84 29-116 123-207 (1179)
25 PF13514 AAA_27: AAA domain 99.8 1.5E-11 3.3E-16 160.7 102.6 204 959-1179 892-1097(1111)
26 KOG0161 Myosin class II heavy 99.8 2.1E-10 4.5E-15 148.0 117.9 75 190-264 1052-1126(1930)
27 COG1124 DppF ABC-type dipeptid 99.8 2.3E-20 5E-25 186.1 9.2 144 1051-1204 80-232 (252)
28 COG1125 OpuBA ABC-type proline 99.8 3E-20 6.5E-25 184.3 9.5 148 1048-1205 70-227 (309)
29 COG2884 FtsE Predicted ATPase 99.8 7.6E-20 1.6E-24 173.4 9.5 139 1048-1197 74-220 (223)
30 COG1127 Ttg2A ABC-type transpo 99.8 5.6E-20 1.2E-24 182.0 9.0 145 1049-1203 81-235 (263)
31 COG1120 FepC ABC-type cobalami 99.8 6.1E-20 1.3E-24 190.1 9.3 154 1044-1207 67-232 (258)
32 COG4598 HisP ABC-type histidin 99.8 6.4E-20 1.4E-24 171.0 8.4 151 1045-1206 85-244 (256)
33 KOG4674 Uncharacterized conser 99.8 1.1E-09 2.3E-14 138.6 109.2 15 584-598 1086-1100(1822)
34 COG0444 DppD ABC-type dipeptid 99.8 7.7E-20 1.7E-24 191.6 7.9 113 1083-1205 128-245 (316)
35 COG1136 SalX ABC-type antimicr 99.8 2.7E-19 6E-24 181.4 10.0 130 1052-1192 82-220 (226)
36 COG3638 ABC-type phosphate/pho 99.8 3E-19 6.5E-24 176.4 10.0 149 1042-1200 70-234 (258)
37 COG1196 Smc Chromosome segrega 99.8 2.5E-10 5.4E-15 149.6 95.6 81 38-121 131-219 (1163)
38 COG1122 CbiO ABC-type cobalt t 99.8 1.6E-19 3.4E-24 188.0 8.1 148 1048-1205 74-230 (235)
39 TIGR02169 SMC_prok_A chromosom 99.8 3E-10 6.6E-15 153.4 95.5 218 29-254 121-348 (1164)
40 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 9.1E-19 2E-23 180.2 9.4 142 1053-1206 75-230 (254)
41 COG4175 ProV ABC-type proline/ 99.8 1.2E-18 2.6E-23 178.3 8.6 143 1053-1205 106-256 (386)
42 TIGR03185 DNA_S_dndD DNA sulfu 99.8 1.2E-14 2.7E-19 178.5 45.6 246 931-1203 393-646 (650)
43 COG1123 ATPase components of v 99.8 7.8E-19 1.7E-23 198.6 7.7 143 1053-1205 91-246 (539)
44 PHA02562 46 endonuclease subun 99.7 2.9E-15 6.3E-20 183.9 38.4 83 1100-1202 465-558 (562)
45 COG1123 ATPase components of v 99.7 1.6E-18 3.5E-23 196.0 8.5 148 1048-1205 362-521 (539)
46 COG1116 TauB ABC-type nitrate/ 99.7 3.8E-18 8.2E-23 172.6 7.8 127 1053-1189 72-206 (248)
47 COG1118 CysA ABC-type sulfate/ 99.7 4.8E-18 1E-22 174.1 8.5 145 1052-1206 76-230 (345)
48 TIGR02314 ABC_MetN D-methionin 99.7 6.2E-18 1.3E-22 188.4 9.5 144 1050-1203 79-230 (343)
49 COG4172 ABC-type uncharacteriz 99.7 4.3E-18 9.3E-23 179.5 7.6 155 1042-1206 352-519 (534)
50 COG4172 ABC-type uncharacteriz 99.7 4.7E-18 1E-22 179.2 7.8 142 1054-1205 94-249 (534)
51 COG4555 NatA ABC-type Na+ tran 99.7 7.4E-18 1.6E-22 161.3 8.0 144 1048-1202 70-221 (245)
52 COG1131 CcmA ABC-type multidru 99.7 1.4E-17 3E-22 182.4 10.1 144 1048-1201 73-224 (293)
53 PRK13651 cobalt transporter AT 99.7 2.3E-17 5E-22 182.3 9.6 145 1049-1204 101-255 (305)
54 COG4181 Predicted ABC-type tra 99.7 4.5E-17 9.8E-22 151.2 8.7 130 1053-1193 88-225 (228)
55 PRK13537 nodulation ABC transp 99.7 3.8E-17 8.2E-22 181.2 9.8 142 1050-1202 77-226 (306)
56 COG3840 ThiQ ABC-type thiamine 99.7 6.3E-17 1.4E-21 152.1 9.6 112 1082-1203 106-219 (231)
57 COG4161 ArtP ABC-type arginine 99.7 9.2E-17 2E-21 147.1 10.3 140 1049-1199 78-226 (242)
58 COG3842 PotA ABC-type spermidi 99.7 2.1E-17 4.5E-22 179.5 7.0 144 1052-1205 76-228 (352)
59 TIGR01188 drrA daunorubicin re 99.7 4.9E-17 1.1E-21 180.9 9.4 140 1051-1201 64-211 (302)
60 COG0411 LivG ABC-type branched 99.7 3.8E-17 8.3E-22 163.5 7.3 158 1024-1208 85-244 (250)
61 TIGR01186 proV glycine betaine 99.7 5.5E-17 1.2E-21 181.7 9.4 143 1052-1204 70-220 (363)
62 PRK15079 oligopeptide ABC tran 99.7 6.6E-17 1.4E-21 180.4 9.5 144 1050-1203 95-251 (331)
63 PRK11650 ugpC glycerol-3-phosp 99.7 5E-17 1.1E-21 183.1 8.5 143 1053-1205 76-226 (356)
64 PRK11308 dppF dipeptide transp 99.7 5.8E-17 1.3E-21 180.8 8.8 111 1084-1204 132-245 (327)
65 cd03261 ABC_Org_Solvent_Resist 99.7 8.9E-17 1.9E-21 172.9 9.9 143 1051-1203 75-226 (235)
66 PRK13637 cbiO cobalt transport 99.7 8.1E-17 1.7E-21 177.5 9.6 144 1050-1203 80-234 (287)
67 PRK13643 cbiO cobalt transport 99.7 7.8E-17 1.7E-21 177.7 9.4 144 1049-1203 80-233 (288)
68 PRK13536 nodulation factor exp 99.7 8.2E-17 1.8E-21 180.1 9.4 142 1050-1202 111-260 (340)
69 COG3839 MalK ABC-type sugar tr 99.7 4E-17 8.6E-22 176.4 6.6 145 1051-1205 73-225 (338)
70 PRK13631 cbiO cobalt transport 99.7 1.1E-16 2.3E-21 178.1 9.8 144 1049-1203 112-265 (320)
71 PRK11432 fbpC ferric transport 99.7 7.3E-17 1.6E-21 181.1 8.5 144 1052-1205 77-228 (351)
72 TIGR03258 PhnT 2-aminoethylpho 99.7 6E-17 1.3E-21 182.2 7.8 144 1052-1205 78-230 (362)
73 PRK11022 dppD dipeptide transp 99.7 7.9E-17 1.7E-21 179.9 8.6 111 1084-1204 129-244 (326)
74 PRK09536 btuD corrinoid ABC tr 99.7 1.2E-16 2.6E-21 181.2 10.2 145 1049-1204 73-229 (402)
75 PRK11153 metN DL-methionine tr 99.7 1.2E-16 2.6E-21 180.1 9.8 142 1051-1202 80-229 (343)
76 PRK09473 oppD oligopeptide tra 99.7 9.3E-17 2E-21 179.4 8.2 110 1084-1203 137-251 (330)
77 TIGR00960 3a0501s02 Type II (G 99.7 1.9E-16 4E-21 168.1 9.9 130 1051-1191 78-215 (216)
78 PRK10851 sulfate/thiosulfate t 99.7 1.3E-16 2.7E-21 179.6 9.1 142 1053-1204 74-227 (353)
79 PRK13634 cbiO cobalt transport 99.7 1.6E-16 3.5E-21 175.4 9.7 144 1050-1203 82-235 (290)
80 KOG0996 Structural maintenance 99.7 3.5E-08 7.5E-13 117.9 83.5 120 299-425 443-562 (1293)
81 TIGR03265 PhnT2 putative 2-ami 99.7 1.3E-16 2.9E-21 179.4 8.8 144 1052-1205 75-226 (353)
82 cd03226 ABC_cobalt_CbiO_domain 99.7 2.1E-16 4.5E-21 166.1 9.4 128 1053-1192 71-204 (205)
83 PRK09452 potA putrescine/sperm 99.7 1.4E-16 3.1E-21 179.9 8.6 143 1053-1205 86-236 (375)
84 TIGR03415 ABC_choXWV_ATP choli 99.7 1.9E-16 4.1E-21 178.1 9.4 142 1053-1204 106-255 (382)
85 TIGR01288 nodI ATP-binding ABC 99.7 1.7E-16 3.7E-21 176.6 8.9 141 1051-1202 75-223 (303)
86 PRK13646 cbiO cobalt transport 99.7 2.2E-16 4.8E-21 174.2 9.6 145 1049-1203 81-235 (286)
87 cd03219 ABC_Mj1267_LivG_branch 99.7 2E-16 4.2E-21 170.6 9.0 108 1086-1204 124-233 (236)
88 COG4608 AppF ABC-type oligopep 99.7 1.5E-16 3.4E-21 163.3 7.6 111 1084-1204 87-200 (268)
89 PRK13647 cbiO cobalt transport 99.7 3.1E-16 6.7E-21 171.8 10.5 139 1049-1198 75-222 (274)
90 COG4148 ModC ABC-type molybdat 99.6 2E-16 4.4E-21 159.2 7.6 143 1052-1207 75-222 (352)
91 PRK13641 cbiO cobalt transport 99.6 3.3E-16 7.1E-21 172.9 9.9 141 1051-1202 83-233 (287)
92 PRK10070 glycine betaine trans 99.6 2.4E-16 5.3E-21 178.7 9.0 140 1054-1203 107-254 (400)
93 TIGR02680 conserved hypothetic 99.6 2E-07 4.3E-12 123.2 92.9 85 1101-1196 1245-1335(1353)
94 COG4559 ABC-type hemin transpo 99.6 6.3E-16 1.4E-20 149.5 10.2 150 1047-1207 69-234 (259)
95 PRK11607 potG putrescine trans 99.6 2.7E-16 5.9E-21 178.0 8.9 144 1052-1205 90-241 (377)
96 PRK11000 maltose/maltodextrin 99.6 2.5E-16 5.5E-21 178.8 8.7 141 1053-1203 75-223 (369)
97 cd03268 ABC_BcrA_bacitracin_re 99.6 4.4E-16 9.6E-21 164.1 9.8 132 1053-1196 72-208 (208)
98 cd03297 ABC_ModC_molybdenum_tr 99.6 3.8E-16 8.3E-21 165.3 9.3 135 1052-1196 74-214 (214)
99 TIGR01187 potA spermidine/putr 99.6 3E-16 6.4E-21 175.7 8.8 142 1053-1204 42-191 (325)
100 cd03260 ABC_PstB_phosphate_tra 99.6 6.5E-16 1.4E-20 165.3 11.1 137 1051-1199 79-225 (227)
101 cd03259 ABC_Carb_Solutes_like 99.6 3E-16 6.5E-21 166.1 8.4 132 1054-1195 73-212 (213)
102 COG1137 YhbG ABC-type (unclass 99.6 3.6E-16 7.7E-21 149.7 7.9 144 1054-1208 80-233 (243)
103 PRK15093 antimicrobial peptide 99.6 4.4E-16 9.5E-21 174.7 9.9 109 1085-1203 135-248 (330)
104 PRK13638 cbiO cobalt transport 99.6 5.1E-16 1.1E-20 170.3 10.2 142 1051-1203 75-225 (271)
105 PRK13636 cbiO cobalt transport 99.6 4.9E-16 1.1E-20 171.1 10.0 144 1050-1203 79-231 (283)
106 cd03265 ABC_DrrA DrrA is the A 99.6 5.3E-16 1.1E-20 165.0 9.8 137 1052-1198 72-216 (220)
107 cd03235 ABC_Metallic_Cations A 99.6 6.2E-16 1.3E-20 163.7 10.2 128 1052-1190 67-208 (213)
108 PRK10619 histidine/lysine/argi 99.6 6E-16 1.3E-20 168.7 10.4 142 1050-1202 89-240 (257)
109 PRK13650 cbiO cobalt transport 99.6 6.3E-16 1.4E-20 169.9 10.3 143 1050-1203 78-229 (279)
110 cd03264 ABC_drug_resistance_li 99.6 8.1E-16 1.8E-20 162.5 10.7 133 1051-1195 70-210 (211)
111 PRK11264 putative amino-acid A 99.6 7.9E-16 1.7E-20 167.4 10.8 141 1051-1202 83-232 (250)
112 TIGR02142 modC_ABC molybdenum 99.6 4.6E-16 9.9E-21 176.5 9.3 144 1052-1205 74-223 (354)
113 PRK13652 cbiO cobalt transport 99.6 6E-16 1.3E-20 170.0 9.9 144 1050-1203 75-227 (277)
114 cd03266 ABC_NatA_sodium_export 99.6 5.8E-16 1.2E-20 164.7 9.3 134 1051-1195 76-217 (218)
115 PRK11831 putative ABC transpor 99.6 7.1E-16 1.5E-20 168.8 10.2 142 1052-1203 83-233 (269)
116 PRK14250 phosphate ABC transpo 99.6 7.5E-16 1.6E-20 166.0 10.2 141 1052-1203 76-221 (241)
117 cd03256 ABC_PhnC_transporter A 99.6 8.8E-16 1.9E-20 166.3 10.8 141 1051-1201 76-232 (241)
118 PRK13649 cbiO cobalt transport 99.6 7.1E-16 1.5E-20 170.3 10.2 143 1050-1203 82-234 (280)
119 TIGR03522 GldA_ABC_ATP gliding 99.6 6.4E-16 1.4E-20 171.7 9.8 141 1050-1202 72-220 (301)
120 PRK11144 modC molybdate transp 99.6 5.4E-16 1.2E-20 175.5 9.4 142 1052-1206 75-221 (352)
121 cd03225 ABC_cobalt_CbiO_domain 99.6 7.1E-16 1.5E-20 163.1 9.4 128 1051-1189 73-209 (211)
122 cd03293 ABC_NrtD_SsuB_transpor 99.6 5.7E-16 1.2E-20 164.7 8.7 134 1053-1196 73-216 (220)
123 PRK09493 glnQ glutamine ABC tr 99.6 8.3E-16 1.8E-20 165.9 10.0 142 1051-1203 75-225 (240)
124 PRK11247 ssuB aliphatic sulfon 99.6 8.6E-16 1.9E-20 165.8 10.0 133 1052-1197 80-217 (257)
125 cd03258 ABC_MetN_methionine_tr 99.6 9.1E-16 2E-20 164.9 10.2 141 1052-1202 81-229 (233)
126 cd03294 ABC_Pro_Gly_Bertaine T 99.6 8E-16 1.7E-20 168.2 9.9 140 1054-1203 103-250 (269)
127 cd03298 ABC_ThiQ_thiamine_tran 99.6 8.1E-16 1.8E-20 162.5 9.6 133 1053-1195 70-210 (211)
128 TIGR02315 ABC_phnC phosphonate 99.6 1.1E-15 2.3E-20 165.7 10.7 141 1051-1201 77-233 (243)
129 PRK14268 phosphate ABC transpo 99.6 1E-15 2.2E-20 166.8 10.3 141 1051-1203 91-242 (258)
130 PRK14242 phosphate transporter 99.6 9.5E-16 2.1E-20 167.0 10.1 143 1050-1204 84-238 (253)
131 cd03218 ABC_YhbG The ABC trans 99.6 5.3E-16 1.1E-20 166.8 8.0 139 1054-1203 76-222 (232)
132 cd03296 ABC_CysA_sulfate_impor 99.6 8.2E-16 1.8E-20 165.8 9.4 140 1054-1203 75-226 (239)
133 PRK13639 cbiO cobalt transport 99.6 9.8E-16 2.1E-20 168.2 10.0 143 1050-1203 75-226 (275)
134 PRK10908 cell division protein 99.6 1.3E-15 2.9E-20 162.2 10.7 134 1051-1195 77-218 (222)
135 PRK04863 mukB cell division pr 99.6 2.8E-08 6E-13 129.1 79.1 207 42-248 256-490 (1486)
136 TIGR01184 ntrCD nitrate transp 99.6 1E-15 2.3E-20 163.4 9.8 104 1086-1199 95-200 (230)
137 TIGR00972 3a0107s01c2 phosphat 99.6 1.1E-15 2.4E-20 165.6 10.1 142 1050-1203 79-232 (247)
138 PRK14257 phosphate ABC transpo 99.6 1.2E-15 2.5E-20 170.3 10.3 146 1049-1206 159-316 (329)
139 PRK13645 cbiO cobalt transport 99.6 7.3E-16 1.6E-20 170.7 8.4 142 1051-1202 88-239 (289)
140 PRK10771 thiQ thiamine transpo 99.6 9.7E-16 2.1E-20 164.3 9.1 141 1053-1203 71-219 (232)
141 PRK14273 phosphate ABC transpo 99.6 1.3E-15 2.7E-20 165.9 9.9 142 1050-1203 85-238 (254)
142 cd03224 ABC_TM1139_LivF_branch 99.6 9.2E-16 2E-20 163.8 8.7 136 1054-1200 76-218 (222)
143 PRK11231 fecE iron-dicitrate t 99.6 1.4E-15 3E-20 165.6 10.2 140 1052-1202 75-226 (255)
144 PRK14245 phosphate ABC transpo 99.6 1.3E-15 2.9E-20 165.4 10.0 143 1050-1204 81-235 (250)
145 COG4152 ABC-type uncharacteriz 99.6 1.4E-15 3.1E-20 150.3 9.1 142 1049-1201 68-217 (300)
146 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 9.8E-16 2.1E-20 163.0 8.5 128 1053-1191 82-217 (218)
147 cd03269 ABC_putative_ATPase Th 99.6 1.4E-15 3.1E-20 160.5 9.4 132 1053-1195 70-209 (210)
148 TIGR03410 urea_trans_UrtE urea 99.6 1.3E-15 2.8E-20 163.4 9.2 139 1053-1201 75-219 (230)
149 TIGR00634 recN DNA repair prot 99.6 2.6E-13 5.6E-18 163.7 30.0 73 1102-1187 439-515 (563)
150 COG4604 CeuD ABC-type enteroch 99.6 1E-15 2.2E-20 146.1 7.2 111 1086-1206 116-228 (252)
151 PRK11629 lolD lipoprotein tran 99.6 1.5E-15 3.3E-20 163.0 9.6 134 1053-1197 87-228 (233)
152 PRK11614 livF leucine/isoleuci 99.6 9.6E-16 2.1E-20 165.1 8.0 141 1052-1203 79-226 (237)
153 PRK14269 phosphate ABC transpo 99.6 1.8E-15 3.9E-20 163.8 10.1 141 1051-1203 77-230 (246)
154 PRK14235 phosphate transporter 99.6 1.7E-15 3.6E-20 165.7 10.0 142 1050-1203 97-251 (267)
155 TIGR02673 FtsE cell division A 99.6 1.6E-15 3.6E-20 160.7 9.4 128 1052-1190 78-213 (214)
156 cd03292 ABC_FtsE_transporter F 99.6 1.7E-15 3.7E-20 160.7 9.4 130 1051-1191 76-213 (214)
157 COG4619 ABC-type uncharacteriz 99.6 2.6E-15 5.5E-20 139.2 9.2 134 1045-1193 69-208 (223)
158 cd03295 ABC_OpuCA_Osmoprotecti 99.6 1.5E-15 3.2E-20 164.1 9.1 141 1052-1202 74-224 (242)
159 PRK09984 phosphonate/organopho 99.6 2.3E-15 5E-20 164.6 10.7 140 1051-1200 84-239 (262)
160 TIGR03005 ectoine_ehuA ectoine 99.6 2.1E-15 4.6E-20 164.0 10.2 143 1051-1203 85-236 (252)
161 cd03263 ABC_subfamily_A The AB 99.6 2.2E-15 4.8E-20 160.5 10.1 135 1052-1198 74-216 (220)
162 PRK13644 cbiO cobalt transport 99.6 1.5E-15 3.2E-20 166.5 9.0 142 1050-1203 74-224 (274)
163 PRK14248 phosphate ABC transpo 99.6 1.9E-15 4.1E-20 165.7 9.7 143 1050-1204 99-253 (268)
164 PRK10895 lipopolysaccharide AB 99.6 1.5E-15 3.3E-20 164.0 8.8 140 1053-1203 78-226 (241)
165 PRK14259 phosphate ABC transpo 99.6 2.3E-15 5E-20 164.6 10.3 142 1050-1203 91-253 (269)
166 PRK14274 phosphate ABC transpo 99.6 2.3E-15 4.9E-20 164.3 10.2 142 1050-1203 90-243 (259)
167 PRK14244 phosphate ABC transpo 99.6 2.4E-15 5.2E-20 163.4 10.3 142 1051-1204 84-238 (251)
168 PRK11124 artP arginine transpo 99.6 3.1E-15 6.7E-20 161.8 10.9 140 1051-1201 80-228 (242)
169 PRK14258 phosphate ABC transpo 99.6 2E-15 4.3E-20 164.7 9.5 146 1050-1205 85-247 (261)
170 TIGR03411 urea_trans_UrtD urea 99.6 1.9E-15 4.1E-20 163.5 9.3 106 1085-1202 123-230 (242)
171 PRK13548 hmuV hemin importer A 99.6 2.8E-15 6.1E-20 163.0 10.6 141 1052-1202 75-229 (258)
172 PRK10575 iron-hydroxamate tran 99.6 2.4E-15 5.2E-20 164.4 10.1 141 1052-1202 84-236 (265)
173 PRK14247 phosphate ABC transpo 99.6 2.2E-15 4.8E-20 163.8 9.7 142 1050-1203 79-234 (250)
174 PRK10744 pstB phosphate transp 99.6 2.5E-15 5.5E-20 163.9 10.2 142 1050-1203 91-244 (260)
175 PRK13635 cbiO cobalt transport 99.6 2.2E-15 4.7E-20 165.5 9.5 142 1050-1202 78-228 (279)
176 TIGR01277 thiQ thiamine ABC tr 99.6 2.4E-15 5.2E-20 159.0 9.5 135 1053-1197 70-212 (213)
177 PRK14270 phosphate ABC transpo 99.6 2.6E-15 5.7E-20 163.1 9.8 143 1050-1204 82-236 (251)
178 PRK10253 iron-enterobactin tra 99.6 3.6E-15 7.8E-20 163.1 10.9 142 1051-1202 79-232 (265)
179 PRK03695 vitamin B12-transport 99.6 3.5E-15 7.6E-20 161.2 10.6 139 1052-1201 68-220 (248)
180 PRK11248 tauB taurine transpor 99.6 2.7E-15 5.8E-20 162.5 9.7 132 1055-1196 72-213 (255)
181 cd03262 ABC_HisP_GlnQ_permease 99.6 2.5E-15 5.5E-20 159.3 9.3 130 1051-1191 74-212 (213)
182 TIGR02769 nickel_nikE nickel i 99.6 3.6E-15 7.7E-20 163.1 10.4 143 1051-1203 86-240 (265)
183 PRK14275 phosphate ABC transpo 99.6 3.2E-15 6.9E-20 164.8 9.8 141 1051-1203 118-270 (286)
184 TIGR02211 LolD_lipo_ex lipopro 99.6 3E-15 6.6E-20 159.6 9.3 129 1053-1192 83-219 (221)
185 PRK14240 phosphate transporter 99.6 3.6E-15 7.8E-20 162.1 9.9 141 1051-1203 82-234 (250)
186 PRK13633 cobalt transporter AT 99.6 2.7E-15 5.8E-20 165.2 8.9 142 1051-1203 83-233 (280)
187 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 3.2E-15 7E-20 160.8 9.2 139 1054-1203 75-221 (236)
188 cd03289 ABCC_CFTR2 The CFTR su 99.6 4.7E-15 1E-19 160.9 10.4 139 1049-1204 73-226 (275)
189 PRK14265 phosphate ABC transpo 99.6 4E-15 8.6E-20 163.1 10.0 142 1051-1204 99-259 (274)
190 cd03301 ABC_MalK_N The N-termi 99.6 4.2E-15 9.2E-20 157.4 9.7 101 1086-1196 111-213 (213)
191 PRK10869 recombination and rep 99.6 6.9E-13 1.5E-17 157.9 29.5 76 1102-1195 429-508 (553)
192 PRK14239 phosphate transporter 99.6 4.7E-15 1E-19 161.5 10.2 141 1051-1203 84-236 (252)
193 PRK14249 phosphate ABC transpo 99.6 4.9E-15 1.1E-19 161.0 10.1 143 1050-1204 82-236 (251)
194 TIGR02770 nickel_nikD nickel i 99.6 4.2E-15 9.2E-20 159.0 9.5 108 1086-1203 103-215 (230)
195 KOG4674 Uncharacterized conser 99.6 5.1E-07 1.1E-11 115.0 112.2 52 24-76 481-537 (1822)
196 PRK13640 cbiO cobalt transport 99.6 3.7E-15 8E-20 164.1 9.1 143 1050-1203 81-232 (282)
197 PRK10261 glutathione transport 99.6 3.1E-15 6.7E-20 183.1 9.3 139 1054-1202 105-257 (623)
198 PRK14238 phosphate transporter 99.6 4.7E-15 1E-19 162.4 9.7 143 1050-1204 102-256 (271)
199 TIGR03873 F420-0_ABC_ATP propo 99.6 6.1E-15 1.3E-19 160.7 10.5 139 1052-1201 74-224 (256)
200 PRK14267 phosphate ABC transpo 99.6 4.2E-15 9.2E-20 161.9 9.1 140 1052-1203 84-237 (253)
201 TIGR03269 met_CoM_red_A2 methy 99.6 4.3E-15 9.4E-20 179.4 10.0 142 1051-1202 107-257 (520)
202 PRK14237 phosphate transporter 99.6 6.7E-15 1.4E-19 161.0 10.3 142 1050-1203 98-251 (267)
203 PRK14243 phosphate transporter 99.6 6.7E-15 1.5E-19 160.7 10.3 141 1051-1203 89-248 (264)
204 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 7.1E-15 1.5E-19 156.1 10.1 98 1088-1196 125-224 (224)
205 cd03245 ABCC_bacteriocin_expor 99.6 8.6E-15 1.9E-19 156.0 10.6 82 1101-1195 138-219 (220)
206 PRK14251 phosphate ABC transpo 99.6 5.7E-15 1.2E-19 160.6 9.5 142 1050-1203 82-235 (251)
207 cd03252 ABCC_Hemolysin The ABC 99.6 8.1E-15 1.7E-19 158.1 10.5 92 1100-1204 135-226 (237)
208 PRK15134 microcin C ABC transp 99.6 4.7E-15 1E-19 179.3 9.6 142 1053-1204 362-516 (529)
209 PRK11701 phnK phosphonate C-P 99.6 7E-15 1.5E-19 160.4 10.1 108 1086-1203 131-241 (258)
210 PRK14256 phosphate ABC transpo 99.6 6.5E-15 1.4E-19 160.1 9.7 142 1050-1203 82-236 (252)
211 PRK13642 cbiO cobalt transport 99.6 6E-15 1.3E-19 162.2 9.5 143 1050-1203 78-229 (277)
212 PRK13545 tagH teichoic acids e 99.6 6.4E-15 1.4E-19 167.9 9.8 104 1088-1202 126-231 (549)
213 PRK14253 phosphate ABC transpo 99.6 8E-15 1.7E-19 159.3 10.3 141 1050-1202 80-232 (249)
214 PRK10584 putative ABC transpor 99.6 7.2E-15 1.6E-19 157.4 9.7 129 1054-1193 89-225 (228)
215 PRK14260 phosphate ABC transpo 99.6 7.1E-15 1.5E-19 160.3 9.8 142 1050-1203 85-243 (259)
216 PRK14255 phosphate ABC transpo 99.6 5.8E-15 1.3E-19 160.7 9.0 142 1051-1204 84-237 (252)
217 PRK14262 phosphate ABC transpo 99.6 8.3E-15 1.8E-19 159.3 10.2 140 1051-1202 82-233 (250)
218 PRK14263 phosphate ABC transpo 99.6 7.8E-15 1.7E-19 159.5 10.0 142 1051-1204 87-246 (261)
219 cd03214 ABC_Iron-Siderophores_ 99.6 6.9E-15 1.5E-19 150.6 9.0 97 1089-1195 81-179 (180)
220 PRK14241 phosphate transporter 99.6 6.5E-15 1.4E-19 160.7 9.2 141 1051-1203 83-242 (258)
221 PRK13632 cbiO cobalt transport 99.6 6E-15 1.3E-19 161.7 9.0 143 1050-1203 80-231 (271)
222 cd03300 ABC_PotA_N PotA is an 99.6 4.8E-15 1E-19 158.8 8.0 140 1053-1202 72-219 (232)
223 TIGR03771 anch_rpt_ABC anchore 99.6 7.3E-15 1.6E-19 156.1 9.3 105 1086-1202 94-200 (223)
224 PRK14254 phosphate ABC transpo 99.6 6.9E-15 1.5E-19 161.8 9.4 140 1051-1202 118-268 (285)
225 PRK14271 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 159.5 10.9 142 1051-1204 99-252 (276)
226 PRK14236 phosphate transporter 99.6 9.1E-15 2E-19 160.4 10.2 142 1050-1203 103-256 (272)
227 PRK13547 hmuV hemin importer A 99.6 1.1E-14 2.3E-19 158.7 10.5 140 1052-1201 82-242 (272)
228 PRK14272 phosphate ABC transpo 99.6 7.5E-15 1.6E-19 160.0 9.3 141 1051-1203 83-236 (252)
229 cd03216 ABC_Carb_Monos_I This 99.6 7.1E-15 1.5E-19 147.4 8.4 81 1103-1194 82-162 (163)
230 PRK11300 livG leucine/isoleuci 99.6 6.6E-15 1.4E-19 160.7 8.9 107 1087-1203 135-243 (255)
231 PRK09700 D-allose transporter 99.6 6.3E-15 1.4E-19 177.5 9.5 106 1086-1202 389-497 (510)
232 PRK14261 phosphate ABC transpo 99.6 7.6E-15 1.6E-19 159.7 9.2 142 1050-1203 84-237 (253)
233 COG2274 SunT ABC-type bacterio 99.6 7.7E-15 1.7E-19 176.7 9.9 144 1047-1203 541-696 (709)
234 TIGR02323 CP_lyasePhnK phospho 99.6 9.5E-15 2.1E-19 159.1 9.7 109 1085-1203 127-238 (253)
235 PRK10418 nikD nickel transport 99.5 1E-14 2.2E-19 158.5 9.9 108 1086-1203 118-230 (254)
236 TIGR03269 met_CoM_red_A2 methy 99.5 8E-15 1.7E-19 177.1 9.9 140 1053-1202 365-516 (520)
237 COG4618 ArpD ABC-type protease 99.5 7.6E-15 1.7E-19 160.5 8.5 148 1043-1202 400-559 (580)
238 cd03257 ABC_NikE_OppD_transpor 99.5 6.6E-15 1.4E-19 158.1 7.9 98 1088-1195 127-227 (228)
239 cd03246 ABCC_Protease_Secretio 99.5 6.6E-15 1.4E-19 149.7 7.5 76 1104-1191 97-172 (173)
240 COG4525 TauB ABC-type taurine 99.5 1E-14 2.2E-19 138.9 8.0 119 1066-1194 90-215 (259)
241 PRK13648 cbiO cobalt transport 99.5 1.3E-14 2.7E-19 159.2 10.0 143 1050-1203 80-231 (269)
242 PRK14266 phosphate ABC transpo 99.5 1.4E-14 3E-19 157.5 10.3 142 1050-1203 81-234 (250)
243 PRK15112 antimicrobial peptide 99.5 1E-14 2.3E-19 159.5 9.3 109 1085-1203 128-239 (267)
244 cd03237 ABC_RNaseL_inhibitor_d 99.5 1.1E-14 2.4E-19 156.0 9.3 93 1087-1189 97-191 (246)
245 PRK15439 autoinducer 2 ABC tra 99.5 1.1E-14 2.4E-19 174.7 10.1 135 1055-1201 88-227 (510)
246 COG4987 CydC ABC-type transpor 99.5 1.2E-14 2.7E-19 160.6 9.3 139 1049-1203 408-561 (573)
247 PRK10261 glutathione transport 99.5 1.2E-14 2.6E-19 178.0 10.1 142 1052-1203 400-553 (623)
248 COG4988 CydD ABC-type transpor 99.5 1.4E-14 3E-19 163.5 9.6 142 1047-1204 389-544 (559)
249 PRK15056 manganese/iron transp 99.5 1.5E-14 3.2E-19 158.7 9.8 105 1086-1202 123-229 (272)
250 cd03267 ABC_NatA_like Similar 99.5 1.7E-14 3.7E-19 154.7 10.0 98 1088-1195 136-235 (236)
251 TIGR03740 galliderm_ABC gallid 99.5 1.5E-14 3.2E-19 154.2 9.5 134 1054-1199 71-209 (223)
252 cd03247 ABCC_cytochrome_bd The 99.5 1.5E-14 3.3E-19 147.9 9.1 82 1101-1195 96-177 (178)
253 TIGR01978 sufC FeS assembly AT 99.5 1.5E-14 3.3E-19 156.8 9.7 103 1086-1199 123-230 (243)
254 PRK02224 chromosome segregatio 99.5 1.2E-07 2.7E-12 122.9 75.2 128 26-153 110-240 (880)
255 PRK14264 phosphate ABC transpo 99.5 1.7E-14 3.8E-19 160.3 10.2 142 1050-1203 123-289 (305)
256 cd03251 ABCC_MsbA MsbA is an e 99.5 2.4E-14 5.3E-19 154.1 10.9 139 1051-1202 74-224 (234)
257 COG0488 Uup ATPase components 99.5 1.3E-14 2.8E-19 168.9 9.3 103 1086-1202 135-238 (530)
258 PRK14246 phosphate ABC transpo 99.5 2E-14 4.4E-19 155.8 10.2 142 1050-1203 87-241 (257)
259 PRK11174 cysteine/glutathione 99.5 1.5E-14 3.2E-19 178.2 10.1 145 1047-1204 417-573 (588)
260 cd03254 ABCC_Glucan_exporter_l 99.5 2E-14 4.3E-19 154.2 9.8 89 1100-1201 136-224 (229)
261 cd03369 ABCC_NFT1 Domain 2 of 99.5 2.2E-14 4.9E-19 150.9 10.0 126 1050-1197 79-206 (207)
262 PRK09544 znuC high-affinity zi 99.5 1.4E-14 3E-19 156.2 8.5 107 1086-1203 101-209 (251)
263 TIGR00968 3a0106s01 sulfate AB 99.5 1.4E-14 3.1E-19 155.6 8.5 139 1053-1201 72-218 (237)
264 cd03234 ABCG_White The White s 99.5 1.7E-14 3.7E-19 154.1 8.7 134 1052-1196 80-226 (226)
265 cd03240 ABC_Rad50 The catalyti 99.5 2.9E-14 6.3E-19 148.2 9.7 92 1099-1200 111-203 (204)
266 PRK15134 microcin C ABC transp 99.5 1.9E-14 4.1E-19 174.0 9.7 107 1085-1201 133-244 (529)
267 PRK13546 teichoic acids export 99.5 2.4E-14 5.2E-19 155.0 9.4 93 1099-1202 139-231 (264)
268 PRK10247 putative ABC transpor 99.5 2E-14 4.3E-19 153.1 8.6 125 1052-1187 80-210 (225)
269 TIGR01166 cbiO cobalt transpor 99.5 2E-14 4.4E-19 148.9 8.5 115 1051-1176 66-189 (190)
270 PRK10938 putative molybdenum t 99.5 1.9E-14 4.1E-19 172.6 9.4 106 1085-1201 115-222 (490)
271 CHL00131 ycf16 sulfate ABC tra 99.5 3.2E-14 6.8E-19 155.0 10.2 102 1087-1199 131-237 (252)
272 PRK13543 cytochrome c biogenes 99.5 2.1E-14 4.5E-19 151.6 8.5 122 1054-1186 83-209 (214)
273 cd03230 ABC_DR_subfamily_A Thi 99.5 1.4E-14 3E-19 147.3 6.9 77 1104-1191 96-172 (173)
274 cd03217 ABC_FeS_Assembly ABC-t 99.5 2.2E-14 4.8E-19 149.5 8.6 84 1102-1196 103-187 (200)
275 PRK15439 autoinducer 2 ABC tra 99.5 2.3E-14 4.9E-19 172.1 9.8 104 1086-1200 383-489 (510)
276 cd03299 ABC_ModC_like Archeal 99.5 3.2E-14 6.9E-19 152.7 9.6 141 1053-1203 71-219 (235)
277 PRK09580 sufC cysteine desulfu 99.5 2.2E-14 4.8E-19 156.0 8.5 86 1103-1199 145-231 (248)
278 PRK11288 araG L-arabinose tran 99.5 2.3E-14 4.9E-19 172.1 9.3 135 1052-1197 78-223 (501)
279 cd03215 ABC_Carb_Monos_II This 99.5 1.7E-14 3.7E-19 148.0 7.1 77 1104-1191 105-181 (182)
280 cd03244 ABCC_MRP_domain2 Domai 99.5 4.9E-14 1.1E-18 150.3 10.8 85 1100-1197 136-220 (221)
281 PRK10419 nikE nickel transport 99.5 3.8E-14 8.2E-19 155.0 10.1 108 1085-1202 130-240 (268)
282 TIGR03608 L_ocin_972_ABC putat 99.5 3.2E-14 7E-19 149.9 9.3 121 1053-1185 76-204 (206)
283 PRK13549 xylose transporter AT 99.5 2.9E-14 6.4E-19 171.4 9.9 105 1085-1200 384-491 (506)
284 PRK09700 D-allose transporter 99.5 3.2E-14 6.8E-19 171.5 10.2 106 1085-1201 125-232 (510)
285 PRK14252 phosphate ABC transpo 99.5 4.6E-14 1E-18 154.5 10.2 141 1050-1202 96-248 (265)
286 PRK10762 D-ribose transporter 99.5 3.6E-14 7.8E-19 170.4 10.1 137 1054-1201 80-228 (501)
287 PRK11288 araG L-arabinose tran 99.5 3.8E-14 8.3E-19 170.1 10.0 105 1085-1200 375-482 (501)
288 PRK13538 cytochrome c biogenes 99.5 3.5E-14 7.5E-19 148.8 8.4 115 1054-1179 75-194 (204)
289 cd03213 ABCG_EPDR ABCG transpo 99.5 3.7E-14 7.9E-19 146.9 8.2 82 1103-1195 111-193 (194)
290 cd03232 ABC_PDR_domain2 The pl 99.5 3.4E-14 7.4E-19 147.0 7.9 83 1103-1196 108-192 (192)
291 PRK11176 lipid transporter ATP 99.5 3.1E-14 6.6E-19 175.3 8.8 144 1048-1204 412-568 (582)
292 cd03270 ABC_UvrA_I The excisio 99.5 3.9E-14 8.5E-19 150.2 8.4 96 1089-1196 120-226 (226)
293 PRK13549 xylose transporter AT 99.5 5E-14 1.1E-18 169.4 10.1 138 1053-1201 82-230 (506)
294 KOG0055 Multidrug/pheromone ex 99.5 3.3E-14 7.2E-19 173.5 8.4 146 1047-1205 421-578 (1228)
295 PRK10982 galactose/methyl gala 99.5 5.3E-14 1.1E-18 168.7 10.1 137 1053-1200 73-220 (491)
296 cd03222 ABC_RNaseL_inhibitor T 99.5 3.2E-14 7E-19 142.6 6.9 77 1104-1190 72-148 (177)
297 cd03248 ABCC_TAP TAP, the Tran 99.5 6.2E-14 1.3E-18 149.9 9.4 80 1099-1191 146-225 (226)
298 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 4.3E-14 9.3E-19 152.5 8.2 89 1100-1201 136-224 (238)
299 PRK10790 putative multidrug tr 99.5 5.2E-14 1.1E-18 173.3 10.1 140 1047-1203 409-563 (592)
300 cd03238 ABC_UvrA The excision 99.5 5.6E-14 1.2E-18 140.8 8.3 92 1088-1191 69-165 (176)
301 PRK10762 D-ribose transporter 99.5 5.6E-14 1.2E-18 168.7 9.9 106 1085-1201 374-482 (501)
302 TIGR02982 heterocyst_DevA ABC 99.5 7E-14 1.5E-18 148.6 9.4 131 1051-1192 80-219 (220)
303 TIGR02633 xylG D-xylose ABC tr 99.5 6.5E-14 1.4E-18 168.5 10.1 103 1086-1199 121-226 (500)
304 cd03231 ABC_CcmA_heme_exporter 99.5 8.4E-14 1.8E-18 145.4 9.7 121 1052-1186 72-197 (201)
305 KOG0964 Structural maintenance 99.5 9.1E-07 2E-11 103.7 74.4 104 731-839 786-890 (1200)
306 PRK13409 putative ATPase RIL; 99.5 5.8E-14 1.3E-18 168.9 9.5 129 1055-1196 402-535 (590)
307 cd03229 ABC_Class3 This class 99.5 4.1E-14 8.8E-19 144.6 7.0 76 1104-1189 101-176 (178)
308 TIGR02633 xylG D-xylose ABC tr 99.5 6.5E-14 1.4E-18 168.5 9.9 103 1085-1198 382-487 (500)
309 PRK11160 cysteine/glutathione 99.5 8.5E-14 1.8E-18 169.7 10.9 142 1048-1205 409-564 (574)
310 KOG0062 ATPase component of AB 99.5 1.7E-13 3.6E-18 150.2 11.7 84 1101-1198 480-563 (582)
311 PRK13657 cyclic beta-1,2-gluca 99.5 7.8E-14 1.7E-18 171.4 10.4 143 1047-1202 403-557 (588)
312 KOG0979 Structural maintenance 99.5 1.1E-06 2.5E-11 104.1 69.4 234 24-272 105-355 (1072)
313 PRK15177 Vi polysaccharide exp 99.5 9.8E-14 2.1E-18 145.8 9.5 89 1099-1199 100-188 (213)
314 cd03253 ABCC_ATM1_transporter 99.5 6.3E-14 1.4E-18 151.1 8.2 89 1101-1202 135-223 (236)
315 COG1132 MdlB ABC-type multidru 99.5 7.3E-14 1.6E-18 170.9 9.8 145 1047-1204 397-553 (567)
316 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 9.1E-14 2E-18 173.9 10.7 137 1048-1203 522-673 (686)
317 TIGR03375 type_I_sec_LssB type 99.5 9.1E-14 2E-18 174.1 10.5 144 1048-1204 534-689 (694)
318 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 6.4E-14 1.4E-18 176.2 9.2 142 1048-1204 548-701 (710)
319 KOG0057 Mitochondrial Fe/S clu 99.5 9.6E-14 2.1E-18 153.7 9.3 141 1047-1203 419-574 (591)
320 TIGR02203 MsbA_lipidA lipid A 99.5 1.1E-13 2.4E-18 170.3 10.8 143 1048-1203 401-556 (571)
321 COG4586 ABC-type uncharacteriz 99.5 1.9E-13 4.1E-18 137.9 10.1 92 1099-1200 152-243 (325)
322 TIGR01846 type_I_sec_HlyB type 99.5 1.2E-13 2.6E-18 172.8 10.8 144 1048-1204 526-681 (694)
323 PRK10982 galactose/methyl gala 99.5 6.7E-14 1.5E-18 167.8 8.0 101 1087-1198 372-475 (491)
324 COG0410 LivF ABC-type branched 99.5 1.6E-13 3.6E-18 136.5 9.1 144 1053-1206 78-229 (237)
325 cd03278 ABC_SMC_barmotin Barmo 99.5 2.4E-13 5.2E-18 140.3 10.6 96 1086-1200 97-196 (197)
326 TIGR02324 CP_lyasePhnL phospho 99.5 1.7E-13 3.7E-18 146.3 9.7 90 1085-1185 128-220 (224)
327 TIGR01193 bacteriocin_ABC ABC- 99.4 1.2E-13 2.6E-18 173.5 9.5 143 1048-1204 543-698 (708)
328 cd03271 ABC_UvrA_II The excisi 99.4 2.3E-13 5.1E-18 144.9 10.3 100 1086-1197 149-260 (261)
329 PRK10636 putative ABC transpor 99.4 1.2E-13 2.7E-18 169.0 9.4 102 1086-1201 410-515 (638)
330 cd03223 ABCD_peroxisomal_ALDP 99.4 1E-13 2.3E-18 139.4 7.1 73 1101-1188 89-161 (166)
331 PRK10789 putative multidrug tr 99.4 2.2E-13 4.8E-18 166.1 11.1 140 1048-1203 384-538 (569)
332 TIGR01842 type_I_sec_PrtD type 99.4 2E-13 4.4E-18 165.9 10.5 141 1049-1201 388-540 (544)
333 TIGR01257 rim_protein retinal- 99.4 1.5E-13 3.3E-18 180.5 9.8 140 1050-1200 2009-2156(2272)
334 TIGR01192 chvA glucan exporter 99.4 2.4E-13 5.2E-18 166.0 10.9 141 1049-1202 405-557 (585)
335 cd03228 ABCC_MRP_Like The MRP 99.4 1.4E-13 3.1E-18 139.6 7.4 72 1104-1188 97-168 (171)
336 COG4107 PhnK ABC-type phosphon 99.4 5.2E-13 1.1E-17 124.5 10.3 96 1098-1203 146-241 (258)
337 PRK13539 cytochrome c biogenes 99.4 2.8E-13 6.1E-18 142.2 9.7 114 1053-1178 73-191 (207)
338 KOG0058 Peptide exporter, ABC 99.4 1.9E-13 4.2E-18 157.3 8.9 144 1049-1205 538-693 (716)
339 TIGR01257 rim_protein retinal- 99.4 2.2E-13 4.8E-18 179.0 10.6 141 1049-1201 999-1147(2272)
340 cd03236 ABC_RNaseL_inhibitor_d 99.4 2.2E-13 4.8E-18 146.5 8.7 92 1086-1188 120-213 (255)
341 PRK13540 cytochrome c biogenes 99.4 2.9E-13 6.4E-18 141.3 9.4 114 1052-1178 73-191 (200)
342 PRK11147 ABC transporter ATPas 99.4 2.1E-13 4.6E-18 167.7 9.5 99 1086-1198 139-238 (635)
343 PRK10636 putative ABC transpor 99.4 2.2E-13 4.7E-18 166.9 9.4 98 1085-1196 128-229 (638)
344 COG4674 Uncharacterized ABC-ty 99.4 2.1E-13 4.6E-18 130.2 7.1 111 1084-1206 126-238 (249)
345 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 2E-13 4.3E-18 133.4 7.3 75 1100-1188 67-141 (144)
346 PRK15064 ABC transporter ATP-b 99.4 2.2E-13 4.8E-18 164.8 9.2 108 1085-1206 417-528 (530)
347 PRK11147 ABC transporter ATPas 99.4 3.6E-13 7.8E-18 165.7 10.0 128 1055-1196 384-520 (635)
348 TIGR00958 3a01208 Conjugate Tr 99.4 3.1E-13 6.6E-18 168.8 8.9 141 1047-1205 549-704 (711)
349 TIGR02204 MsbA_rel ABC transpo 99.4 5.7E-13 1.2E-17 164.0 11.2 140 1048-1203 409-563 (576)
350 cd03233 ABC_PDR_domain1 The pl 99.4 3.8E-13 8.2E-18 140.4 8.1 86 1100-1195 115-201 (202)
351 PRK15064 ABC transporter ATP-b 99.4 3.6E-13 7.8E-18 162.9 9.1 102 1086-1201 135-240 (530)
352 cd03288 ABCC_SUR2 The SUR doma 99.4 3.9E-13 8.5E-18 146.3 8.4 89 1101-1202 154-242 (257)
353 PLN03211 ABC transporter G-25; 99.4 3.6E-13 7.9E-18 164.2 8.9 139 1053-1202 140-295 (659)
354 TIGR01189 ccmA heme ABC export 99.4 5.3E-13 1.1E-17 139.3 8.9 112 1054-1177 74-190 (198)
355 cd00267 ABC_ATPase ABC (ATP-bi 99.4 3.7E-13 8E-18 134.7 7.3 74 1103-1187 80-153 (157)
356 cd03291 ABCC_CFTR1 The CFTR su 99.4 4.3E-13 9.4E-18 146.2 8.3 89 1101-1202 157-246 (282)
357 PRK10938 putative molybdenum t 99.4 4.1E-13 9E-18 161.1 9.0 101 1086-1196 381-485 (490)
358 PTZ00265 multidrug resistance 99.4 4.1E-13 8.9E-18 177.2 9.7 147 1046-1203 1289-1452(1466)
359 PLN03073 ABC transporter F fam 99.4 6.5E-13 1.4E-17 162.7 10.1 100 1085-1198 606-709 (718)
360 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 7.4E-13 1.6E-17 160.7 10.4 125 1055-1193 387-520 (552)
361 PLN03073 ABC transporter F fam 99.4 6.5E-13 1.4E-17 162.8 9.8 99 1085-1197 323-425 (718)
362 COG0488 Uup ATPase components 99.4 5.7E-13 1.2E-17 155.3 8.8 95 1086-1195 419-516 (530)
363 PRK11819 putative ABC transpor 99.4 5.9E-13 1.3E-17 161.5 9.0 100 1086-1199 145-246 (556)
364 COG1101 PhnK ABC-type uncharac 99.4 1.5E-12 3.3E-17 126.7 9.5 92 1099-1200 144-235 (263)
365 COG1119 ModF ABC-type molybden 99.4 9.2E-13 2E-17 132.2 8.1 103 1085-1196 151-255 (257)
366 PF12128 DUF3584: Protein of u 99.4 1.7E-05 3.7E-10 104.7 98.2 63 1103-1174 1120-1185(1201)
367 PF02463 SMC_N: RecF/RecN/SMC 99.4 8.5E-13 1.9E-17 140.6 8.3 84 1103-1200 136-219 (220)
368 PRK13541 cytochrome c biogenes 99.4 9.6E-13 2.1E-17 136.8 8.4 102 1064-1178 84-187 (195)
369 cd03279 ABC_sbcCD SbcCD and ot 99.4 6.3E-13 1.4E-17 140.0 7.0 84 1099-1193 119-212 (213)
370 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 8.7E-13 1.9E-17 160.1 9.0 98 1089-1200 146-245 (552)
371 PRK11819 putative ABC transpor 99.4 1.3E-12 2.8E-17 158.5 10.4 125 1055-1193 389-522 (556)
372 KOG0062 ATPase component of AB 99.4 1.3E-12 2.8E-17 143.4 9.1 80 1100-1193 195-274 (582)
373 cd03290 ABCC_SUR1_N The SUR do 99.4 8.5E-13 1.9E-17 140.2 7.5 76 1100-1187 137-214 (218)
374 COG1129 MglA ABC-type sugar tr 99.4 1.6E-12 3.4E-17 146.9 9.8 132 1055-1197 85-228 (500)
375 PLN03232 ABC transporter C fam 99.4 1.1E-12 2.4E-17 175.1 10.2 142 1047-1205 1304-1460(1495)
376 TIGR02857 CydD thiol reductant 99.4 1.6E-12 3.6E-17 157.9 10.8 124 1048-1184 391-526 (529)
377 PLN03130 ABC transporter C fam 99.4 1.3E-12 2.7E-17 174.4 10.1 141 1047-1204 1307-1462(1622)
378 TIGR02868 CydC thiol reductant 99.4 1.7E-12 3.7E-17 157.8 10.3 115 1048-1174 403-529 (529)
379 cd03250 ABCC_MRP_domain1 Domai 99.4 1.1E-12 2.4E-17 137.7 7.5 77 1100-1188 124-201 (204)
380 PRK01156 chromosome segregatio 99.3 2.1E-05 4.5E-10 102.2 75.8 53 23-75 106-160 (895)
381 TIGR01194 cyc_pep_trnsptr cycl 99.3 2.1E-12 4.6E-17 156.8 10.4 129 1049-1195 412-551 (555)
382 PRK03918 chromosome segregatio 99.3 8.6E-06 1.9E-10 106.2 72.3 247 934-1204 631-877 (880)
383 PRK13409 putative ATPase RIL; 99.3 1.8E-12 3.8E-17 156.1 9.4 91 1086-1188 193-285 (590)
384 COG4778 PhnL ABC-type phosphon 99.3 4E-12 8.7E-17 118.4 9.3 93 1084-1187 130-225 (235)
385 COG3845 ABC-type uncharacteriz 99.3 2.8E-12 6.2E-17 141.2 9.8 139 1048-1197 74-223 (501)
386 PTZ00265 multidrug resistance 99.3 2.8E-12 6E-17 169.4 11.4 79 1101-1190 577-655 (1466)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.3 2.5E-12 5.4E-17 138.8 8.9 89 1101-1206 153-246 (247)
388 PRK10522 multidrug transporter 99.3 2.9E-12 6.4E-17 155.7 10.2 131 1048-1196 392-531 (547)
389 TIGR00955 3a01204 The Eye Pigm 99.3 2.7E-12 5.9E-17 157.1 10.0 141 1050-1201 96-254 (617)
390 TIGR01271 CFTR_protein cystic 99.3 2.8E-12 6E-17 171.0 10.5 140 1047-1203 1286-1440(1490)
391 PRK10535 macrolide transporter 99.3 2.9E-12 6.2E-17 157.6 9.6 138 1053-1202 86-231 (648)
392 KOG0055 Multidrug/pheromone ex 99.3 2.6E-12 5.6E-17 157.2 8.9 165 1026-1203 1033-1213(1228)
393 PTZ00243 ABC transporter; Prov 99.3 4.6E-12 9.9E-17 168.9 11.7 140 1047-1203 1378-1533(1560)
394 TIGR00957 MRP_assoc_pro multi 99.3 3E-12 6.5E-17 171.3 9.8 141 1047-1204 1354-1509(1522)
395 cd03273 ABC_SMC2_euk Eukaryoti 99.3 5.1E-12 1.1E-16 137.1 9.7 85 1099-1202 162-250 (251)
396 COG0396 sufC Cysteine desulfur 99.3 6.3E-12 1.4E-16 124.5 7.7 88 1103-1202 144-232 (251)
397 TIGR00954 3a01203 Peroxysomal 99.3 1E-11 2.2E-16 153.0 10.8 112 1053-1178 515-643 (659)
398 TIGR00630 uvra excinuclease AB 99.2 7.9E-12 1.7E-16 154.9 7.9 91 1099-1201 483-581 (924)
399 KOG0927 Predicted transporter 99.2 5.8E-11 1.3E-15 131.4 13.5 84 1102-1198 220-304 (614)
400 COG4133 CcmA ABC-type transpor 99.2 1.8E-11 3.8E-16 117.2 8.1 100 1067-1177 92-193 (209)
401 cd03239 ABC_SMC_head The struc 99.2 2.3E-11 4.9E-16 123.1 9.4 77 1104-1197 95-175 (178)
402 KOG0933 Structural maintenance 99.2 2.7E-05 5.9E-10 92.3 80.1 22 39-61 73-94 (1174)
403 PF10174 Cast: RIM-binding pro 99.2 3.6E-05 7.9E-10 93.4 83.1 58 216-273 109-166 (775)
404 PRK00349 uvrA excinuclease ABC 99.2 1.2E-11 2.7E-16 153.5 8.2 91 1099-1201 485-583 (943)
405 COG4167 SapF ABC-type antimicr 99.2 2E-11 4.3E-16 115.1 7.4 116 1080-1205 123-241 (267)
406 PLN03140 ABC transporter G fam 99.2 1.8E-11 3.9E-16 160.9 9.6 137 1051-1198 951-1105(1470)
407 cd03272 ABC_SMC3_euk Eukaryoti 99.2 3.1E-11 6.8E-16 130.8 9.7 85 1099-1202 154-242 (243)
408 COG5265 ATM1 ABC-type transpor 99.2 1.9E-11 4E-16 131.1 7.0 144 1048-1204 332-487 (497)
409 TIGR00956 3a01205 Pleiotropic 99.2 2.6E-11 5.6E-16 160.3 9.9 137 1051-1198 834-988 (1394)
410 cd03276 ABC_SMC6_euk Eukaryoti 99.2 3.6E-11 7.8E-16 124.3 8.8 86 1097-1197 103-192 (198)
411 KOG0059 Lipid exporter ABCA1 a 99.2 3.9E-11 8.4E-16 151.8 9.9 141 1050-1201 637-785 (885)
412 PLN03232 ABC transporter C fam 99.2 1.7E-11 3.8E-16 163.8 7.1 136 1050-1202 676-827 (1495)
413 PRK00349 uvrA excinuclease ABC 99.2 3.7E-11 8.1E-16 149.3 9.4 93 1099-1203 826-927 (943)
414 PLN03130 ABC transporter C fam 99.2 2.2E-11 4.8E-16 162.7 7.4 135 1051-1202 677-827 (1622)
415 cd03274 ABC_SMC4_euk Eukaryoti 99.2 7E-11 1.5E-15 123.5 9.4 80 1100-1197 124-207 (212)
416 KOG0056 Heavy metal exporter H 99.2 2E-11 4.2E-16 132.1 4.8 145 1047-1204 606-762 (790)
417 COG4136 ABC-type uncharacteriz 99.2 2.9E-11 6.2E-16 110.2 5.0 118 1051-1178 75-199 (213)
418 KOG0927 Predicted transporter 99.2 4.3E-11 9.2E-16 132.4 7.2 95 1088-1196 491-588 (614)
419 PF12128 DUF3584: Protein of u 99.2 0.00019 4.2E-09 94.9 90.2 61 404-464 496-557 (1201)
420 COG1245 Predicted ATPase, RNas 99.2 1.2E-10 2.6E-15 125.9 10.1 90 1087-1187 195-286 (591)
421 TIGR00630 uvra excinuclease AB 99.1 7.9E-11 1.7E-15 146.2 10.0 89 1099-1199 824-921 (924)
422 cd03277 ABC_SMC5_euk Eukaryoti 99.1 4.6E-11 1E-15 124.8 6.6 79 1100-1184 123-202 (213)
423 PRK00635 excinuclease ABC subu 99.1 7.8E-11 1.7E-15 152.7 9.2 102 1089-1202 792-905 (1809)
424 TIGR01271 CFTR_protein cystic 99.1 7.8E-11 1.7E-15 157.3 9.3 135 1054-1202 488-635 (1490)
425 TIGR00957 MRP_assoc_pro multi 99.1 4.6E-11 1E-15 160.0 7.2 138 1054-1202 700-849 (1522)
426 KOG0066 eIF2-interacting prote 99.1 3E-11 6.4E-16 128.7 4.0 69 1101-1183 702-770 (807)
427 PRK00635 excinuclease ABC subu 99.1 8.4E-11 1.8E-15 152.4 8.8 90 1100-1201 473-570 (1809)
428 COG1134 TagH ABC-type polysacc 99.1 8.9E-11 1.9E-15 118.5 7.0 94 1099-1203 143-236 (249)
429 TIGR00956 3a01205 Pleiotropic 99.1 6.7E-11 1.5E-15 156.4 7.2 103 1089-1201 188-298 (1394)
430 cd03241 ABC_RecN RecN ATPase i 99.1 1.8E-10 3.9E-15 126.4 9.4 83 1102-1202 169-255 (276)
431 PTZ00243 ABC transporter; Prov 99.1 1E-10 2.3E-15 156.1 9.0 138 1053-1202 721-869 (1560)
432 PLN03140 ABC transporter G fam 99.1 9.1E-11 2E-15 154.3 7.0 105 1088-1202 314-426 (1470)
433 COG1129 MglA ABC-type sugar tr 99.1 1.3E-10 2.8E-15 131.7 6.8 89 1099-1198 397-485 (500)
434 COG1245 Predicted ATPase, RNas 99.1 1.9E-10 4.2E-15 124.3 6.9 76 1100-1185 452-527 (591)
435 COG0497 RecN ATPase involved i 99.1 5.6E-07 1.2E-11 103.2 34.6 85 1102-1200 430-514 (557)
436 PF10174 Cast: RIM-binding pro 99.1 0.0002 4.4E-09 87.1 81.4 37 487-523 379-415 (775)
437 KOG0061 Transporter, ABC super 99.0 4.8E-10 1E-14 135.5 10.4 144 1048-1202 99-259 (613)
438 cd03227 ABC_Class2 ABC-type Cl 99.0 9E-10 2E-14 110.3 9.0 76 1102-1194 76-155 (162)
439 COG4170 SapD ABC-type antimicr 99.0 5.5E-10 1.2E-14 107.8 6.5 111 1084-1204 134-249 (330)
440 PF01576 Myosin_tail_1: Myosin 99.0 9.4E-11 2E-15 146.5 1.3 38 82-119 33-70 (859)
441 KOG0018 Structural maintenance 98.9 0.00051 1.1E-08 82.9 71.2 78 24-102 36-120 (1141)
442 PF01576 Myosin_tail_1: Myosin 98.9 1.6E-10 3.4E-15 144.5 -0.1 17 62-78 75-91 (859)
443 KOG0054 Multidrug resistance-a 98.9 1E-09 2.2E-14 138.6 5.0 137 1050-1202 579-730 (1381)
444 PHA02562 46 endonuclease subun 98.9 2.9E-06 6.3E-11 104.5 35.0 135 18-152 103-246 (562)
445 COG4138 BtuD ABC-type cobalami 98.9 2.8E-09 6E-14 100.2 6.0 100 1095-1205 117-223 (248)
446 KOG0066 eIF2-interacting prote 98.8 2.1E-09 4.7E-14 114.8 5.1 91 1085-1189 391-484 (807)
447 PF13558 SbcCD_C: Putative exo 98.8 6E-09 1.3E-13 91.7 6.5 56 1099-1154 28-90 (90)
448 PRK04778 septation ring format 98.8 0.0011 2.5E-08 80.4 55.7 58 937-995 449-508 (569)
449 PRK00064 recF recombination pr 98.8 5.3E-08 1.1E-12 110.8 15.8 72 1101-1180 271-345 (361)
450 KOG0994 Extracellular matrix g 98.8 0.0014 3E-08 78.8 58.8 19 894-912 1726-1744(1758)
451 COG4178 ABC-type uncharacteriz 98.8 2.1E-08 4.5E-13 116.4 10.6 79 1102-1198 514-592 (604)
452 KOG0054 Multidrug resistance-a 98.8 1.4E-08 3E-13 128.5 9.7 145 1047-1204 1208-1363(1381)
453 cd03280 ABC_MutS2 MutS2 homolo 98.7 1.8E-08 3.9E-13 105.0 7.2 84 1100-1196 88-172 (200)
454 cd03242 ABC_RecF RecF is a rec 98.7 2.9E-08 6.2E-13 108.7 7.1 71 1102-1181 182-255 (270)
455 COG3845 ABC-type uncharacteriz 98.7 4.9E-08 1.1E-12 108.3 8.5 104 1085-1199 382-488 (501)
456 PF13166 AAA_13: AAA domain 98.6 1.9E-05 4.2E-10 100.2 32.7 97 1102-1202 499-604 (712)
457 KOG0250 DNA repair protein RAD 98.6 0.0046 9.9E-08 75.7 61.3 43 190-232 211-253 (1074)
458 TIGR00611 recf recF protein. A 98.6 4.8E-07 1.1E-11 102.6 13.5 69 1102-1178 274-345 (365)
459 COG0178 UvrA Excinuclease ATPa 98.6 6.1E-08 1.3E-12 113.1 6.1 92 1100-1203 819-919 (935)
460 KOG0994 Extracellular matrix g 98.5 0.0091 2E-07 72.2 58.0 100 751-850 1511-1610(1758)
461 KOG0060 Long-chain acyl-CoA tr 98.5 3.9E-07 8.4E-12 102.5 8.8 89 1089-1199 552-644 (659)
462 COG4717 Uncharacterized conser 98.4 0.011 2.4E-07 70.2 76.0 197 963-1178 774-971 (984)
463 cd03285 ABC_MSH2_euk MutS2 hom 98.4 4.1E-07 8.9E-12 95.8 7.2 82 1102-1196 88-174 (222)
464 COG0178 UvrA Excinuclease ATPa 98.3 9E-07 2E-11 103.6 8.4 94 1100-1205 478-579 (935)
465 PF07888 CALCOCO1: Calcium bin 98.3 0.011 2.3E-07 68.4 40.5 11 987-997 441-451 (546)
466 COG2401 ABC-type ATPase fused 98.3 8.2E-07 1.8E-11 95.4 6.4 100 1086-1195 486-590 (593)
467 cd03243 ABC_MutS_homologs The 98.3 1.4E-06 3.1E-11 91.0 8.1 85 1101-1198 89-174 (202)
468 PRK04778 septation ring format 98.3 0.028 6.2E-07 68.4 59.0 89 697-788 346-434 (569)
469 KOG2355 Predicted ABC-type tra 98.2 1.9E-06 4E-11 83.8 6.0 85 1101-1195 145-229 (291)
470 KOG0065 Pleiotropic drug resis 98.2 1.4E-06 3E-11 108.0 6.2 104 1082-1197 902-1015(1391)
471 smart00534 MUTSac ATPase domai 98.2 3.2E-06 6.8E-11 86.8 7.3 72 1100-1183 58-130 (185)
472 COG4615 PvdE ABC-type sideroph 98.2 1.1E-05 2.4E-10 86.6 11.0 84 1102-1196 447-530 (546)
473 PF00005 ABC_tran: ABC transpo 98.1 2.5E-06 5.5E-11 83.2 5.5 31 1102-1138 107-137 (137)
474 KOG0063 RNAse L inhibitor, ABC 98.1 1.4E-06 3E-11 94.1 3.7 75 1100-1184 453-527 (592)
475 KOG0063 RNAse L inhibitor, ABC 98.1 2.5E-06 5.3E-11 92.2 5.5 80 1098-1188 208-287 (592)
476 PRK14079 recF recombination pr 98.1 2.7E-05 5.9E-10 88.2 14.3 53 1102-1154 262-317 (349)
477 PF00261 Tropomyosin: Tropomyo 98.1 0.0034 7.3E-08 66.9 28.8 7 987-993 221-227 (237)
478 PF00038 Filament: Intermediat 98.1 0.017 3.8E-07 65.0 36.2 14 704-717 52-65 (312)
479 KOG0064 Peroxisomal long-chain 98.1 2.1E-06 4.5E-11 95.2 4.2 66 1099-1178 608-673 (728)
480 KOG0977 Nuclear envelope prote 98.1 0.0072 1.6E-07 69.7 32.5 18 1123-1140 503-521 (546)
481 PF06160 EzrA: Septation ring 98.1 0.071 1.5E-06 64.6 52.9 458 317-855 21-503 (560)
482 cd03282 ABC_MSH4_euk MutS4 hom 98.0 7.4E-06 1.6E-10 84.9 6.1 71 1100-1182 88-159 (204)
483 PF13304 AAA_21: AAA domain; P 98.0 8.3E-06 1.8E-10 91.0 7.1 67 1100-1177 233-302 (303)
484 PF00261 Tropomyosin: Tropomyo 98.0 0.0033 7.2E-08 66.9 25.8 40 879-918 177-216 (237)
485 KOG4643 Uncharacterized coiled 98.0 0.097 2.1E-06 63.3 48.6 400 656-1057 175-608 (1195)
486 PF05701 WEMBL: Weak chloropla 98.0 0.093 2E-06 63.0 50.5 492 398-917 27-520 (522)
487 PF00038 Filament: Intermediat 98.0 0.055 1.2E-06 60.9 36.7 129 120-252 5-134 (312)
488 KOG0977 Nuclear envelope prote 98.0 0.074 1.6E-06 61.7 38.2 60 941-1001 273-334 (546)
489 PF07888 CALCOCO1: Calcium bin 97.9 0.078 1.7E-06 61.5 46.3 11 585-595 500-510 (546)
490 cd03284 ABC_MutS1 MutS1 homolo 97.9 2.2E-05 4.7E-10 82.5 7.4 92 1102-1200 84-178 (216)
491 COG1340 Uncharacterized archae 97.9 0.048 1E-06 57.8 34.9 92 817-913 158-249 (294)
492 COG4694 Uncharacterized protei 97.9 0.0055 1.2E-07 68.7 25.5 88 1103-1198 529-628 (758)
493 PRK00409 recombination and DNA 97.8 2.3E-05 4.9E-10 97.6 7.0 83 1101-1195 388-470 (782)
494 cd03283 ABC_MutS-like MutS-lik 97.8 5.3E-05 1.1E-09 78.4 8.5 50 1126-1180 104-154 (199)
495 PF05557 MAD: Mitotic checkpoi 97.8 4.3E-05 9.4E-10 95.8 8.3 72 885-956 503-586 (722)
496 COG3910 Predicted ATPase [Gene 97.8 5.3E-05 1.2E-09 73.1 6.5 65 1102-1178 128-192 (233)
497 PF13175 AAA_15: AAA ATPase do 97.7 5.6E-05 1.2E-09 89.6 7.9 74 1100-1177 338-415 (415)
498 PF05483 SCP-1: Synaptonemal c 97.7 0.18 3.8E-06 58.8 82.4 691 25-825 12-775 (786)
499 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00016 3.4E-09 75.8 8.3 63 1117-1181 98-161 (213)
500 COG4913 Uncharacterized protei 97.6 0.26 5.6E-06 57.6 58.9 89 1102-1201 989-1084(1104)
No 1
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=100.00 E-value=7.2e-128 Score=1142.56 Aligned_cols=1179 Identities=38% Similarity=0.550 Sum_probs=1080.0
Q ss_pred CcccccchheeeccCCCCccccccccccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCCCchhhHHhhHHhhhhhhhH
Q 000957 1 MEYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYT 80 (1209)
Q Consensus 1 ~~~ktl~~~l~~~~~~~g~~~~~s~k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~ep~~Lkk~fDdIf~a~ky~ 80 (1209)
++||||||+|+.++ + |+++|+|+||+|+|++||.+||||+|||+||||||||||+||||||+.||++||+||++|+|+
T Consensus 107 ~~~ktles~~~~~~-~-g~k~tlS~r~~d~d~~~~~~lGVskAIl~~VIFcHQEdS~WPLsEp~~LKkkfD~IF~~tky~ 184 (1294)
T KOG0962|consen 107 MEFKTLESVIWAIN-D-GDRVTLSGRSADLDAEMPLHLGVSKAILENVIFCHQEDSTWPLSEPKNLKKKFDDIFSATKYT 184 (1294)
T ss_pred HHHHHHhhhheeee-c-CccccccchhhhhhHHHHHhcCCcHHHHhhhheecccCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 47999999999996 6 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000957 81 KALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLR 160 (1209)
Q Consensus 81 kale~lk~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~ 160 (1209)
||+|+|+++|+++..++|.++..++|++..|+++..++..+.....++...++++.+++.++.+....+.+++....++.
T Consensus 185 KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~ 264 (1294)
T KOG0962|consen 185 KALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELE 264 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 161 KMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAY 240 (1209)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (1209)
+...++..+..++..+.+++..+...+...+++++.++.+...+|...+..++..+..++.++.++..+...+......+
T Consensus 265 k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~ 344 (1294)
T KOG0962|consen 265 KLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTEL 344 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999976789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 241 TAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAW 320 (1209)
Q Consensus 241 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1209)
..+.|.++++...|+.....++.++..++..+.+.++...+++.....+|...+...+......+...........+.+.
T Consensus 345 ~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~ 424 (1294)
T KOG0962|consen 345 DLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNAL 424 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999988888877877767778888888888899999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 000957 321 DSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINI 400 (1209)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~i 400 (1209)
.....++.....+.........-.. .........+...+.. ...+..+..++..++..+..+.+.....+....|
T Consensus 425 ~~~~~~~~~~~~l~~~~~~~~~~~~---~E~k~l~~~~~~~e~s--~~~~~~~~~r~~~~~~~~~s~~~~~~~~~l~e~i 499 (1294)
T KOG0962|consen 425 DLIKEITDREVSLEAQKRIKDEIKK---LESKGLKDKSFQYEDS--TDDLKKLDERLKEAERLLESAEKNNDELALKEKI 499 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHhhhh--HhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 8888888777766653332222221 1222222222222222 4458888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 000957 401 RQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQA 480 (1209)
Q Consensus 401 ~~~~~~i~~l~~el~~l~~e~~~l~~~~~~~~~l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 480 (1209)
...+..+..++..+..++..+..++..+..++++.++.+.+..+...+..+...+.+.+....+-.+. ....++.+
T Consensus 500 ~~~q~~~~~l~~~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~~----~~~~le~~ 575 (1294)
T KOG0962|consen 500 AEKQNEMAQLEIQKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFPLT----NDRSLEKE 575 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccCcc----chhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998777766553333 22677888
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 000957 481 LRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLS-KHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRD 559 (1209)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 559 (1209)
+..+...+.........++.....++.........+. .....+..... .+...|+.++.|.+.|+.++..+.
T Consensus 576 ~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~-------~lk~~sgt~~~~~~~le~l~~eie 648 (1294)
T KOG0962|consen 576 LHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEF-------FLKDESGTIDEYLDLLERLKGEIE 648 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHhhccchhhHHHHHHHHHHHHH
Confidence 8899999999999999988888888888888777776 34344444444 444667667999999999999999
Q ss_pred HHHhhhhhHHhHHHhhHHHHHHHhhCCCCccccCCCCchHHHHHHHHHHHHHhccHHHHHHhhHhhhhhHHHHHHHHhhH
Q 000957 560 VQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLR 639 (1209)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~r~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 639 (1209)
..+.+++++.+...||.+|++.+...+|||+|.|.|..++...|..++...+...|+.+......+......+..+..+.
T Consensus 649 ~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~ 728 (1294)
T KOG0962|consen 649 KARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEVELSKEEKIFEILLKLK 728 (1294)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999977755899999999999999999999999999988899999999
Q ss_pred hHHHHHHhccccCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000957 640 MVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLE 719 (1209)
Q Consensus 640 ~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ei~~l~~ei~~l~ 719 (1209)
|....+.++.+..+|.++.++.....++..+....+.....++.+......+..+..++..+.++..++.....+++.+.
T Consensus 729 ~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~ 808 (1294)
T KOG0962|consen 729 PTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELV 808 (1294)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877766899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000957 720 YMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELE 799 (1209)
Q Consensus 720 ~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 799 (1209)
+.+.++.....++.+++.+...+..++..++.++..++.........++.+....+.++.....+...+....++..++.
T Consensus 809 s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~ 888 (1294)
T KOG0962|consen 809 SELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIE 888 (1294)
T ss_pred HhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99976332688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Q 000957 800 HLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDER 879 (1209)
Q Consensus 800 ~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~ 879 (1209)
++.+.+......+..+...+.++...+..+.....+...+.+..+..++..++.++..++.+..+..-...+...+..
T Consensus 889 ~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~-- 966 (1294)
T KOG0962|consen 889 ELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFD-- 966 (1294)
T ss_pred HHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh--
Confidence 999999999999999999999999999999999999999988877777888888888888888877776666553211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 000957 880 FKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVS 959 (1209)
Q Consensus 880 l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~~~~~ 959 (1209)
... ...+..+...+......+....+.++++...++|+.||+.|+.+...+.++..++..++.++...+. .
T Consensus 967 --~~~------~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~-~ 1037 (1294)
T KOG0962|consen 967 --DLR------IAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADI-K 1037 (1294)
T ss_pred --hhc------hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H
Confidence 111 5667777888888889999999999999999999999999999999999999999999999999996 8
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000957 960 TFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKA 1039 (1209)
Q Consensus 960 ~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~ 1039 (1209)
.+.+++..|...+..+.++.+.+.|+++++..++..++.+|..++|++++++|++++|+++|+.+.+.||.+|+.+||.+
T Consensus 1038 ~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~A 1117 (1294)
T KOG0962|consen 1038 SVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKA 1117 (1294)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCcc--ccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHH
Q 000957 1040 LMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEG--AGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1040 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
+|.||+++|+.||++|..+|+.+|.|+++++|.|.++..+ .++++|+|+|||..|+.+.+|+|+||+|||+|||||||
T Consensus 1118 im~fHs~KMeeiN~iI~elW~~tYrG~Did~IrIrsD~~~s~~~~rsYnyrVv~~kgd~eldMRGRcSAGQKvLAsliIR 1197 (1294)
T KOG0962|consen 1118 IMQFHSMKMEEINRIIRELWRKTYRGTDIDYIKIRSDSVSSSDKRRTYNYRVVMVKGDTELDMRGRCSAGQKVLASLIIR 1197 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcceEEEeeccccccccccccceeEEEEechHHHHhccCccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776 77899999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
+|||.+||.+||+|+|||||++||..|+.+|+..|..||..|+.+.+||+||||||..|+..++...++.++|+|.++.+
T Consensus 1198 LALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~kd~~ 1277 (1294)
T KOG0962|consen 1198 LALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVKKDES 1277 (1294)
T ss_pred HHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhcccchheeeecccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccc
Q 000957 1198 QHSIIEAQEIF 1208 (1209)
Q Consensus 1198 ~~s~~~~~~~~ 1208 (1209)
+.|.|++.++.
T Consensus 1278 ~~s~i~~~~~~ 1288 (1294)
T KOG0962|consen 1278 QISMIVKHSIY 1288 (1294)
T ss_pred hcceeeeecCc
Confidence 99999887764
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-119 Score=1176.94 Aligned_cols=1186 Identities=27% Similarity=0.447 Sum_probs=1125.5
Q ss_pred cccccchheeeccCCCCccccccccccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCCCchhhHHhhHHhhhhhhhHH
Q 000957 2 EYKAIESVLQTINPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTK 81 (1209)
Q Consensus 2 ~~ktl~~~l~~~~~~~g~~~~~s~k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~ep~~Lkk~fDdIf~a~ky~k 81 (1209)
+|++++|++.... + |+++++|++|+|+|..||.+||||+++|.|||||||+||+||+++|+.+|++||+|||+++|++
T Consensus 109 ~~~~~~~~~~~~~-~-g~~~~~s~~~~e~~~~i~~~lGv~~~~f~~vi~~~Qge~~~~~~~~~~rk~~~d~if~~~~y~k 186 (1311)
T TIGR00606 109 EFKTLEGVITRYK-H-GEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIK 186 (1311)
T ss_pred cchhhhhhheecC-C-CceeeccccHHHHHHHHHHHhCCCHHHHhhceeeCCcccccccCChHHHHHHHHHHhhhhHHHH
Confidence 6899999988774 5 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000957 82 ALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRK 161 (1209)
Q Consensus 82 ale~lk~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~ 161 (1209)
++|+++.+++++...++.++.++++++.++++|..++..+...+.+++.+..++..+..++.++..++..++.....|..
T Consensus 187 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~ 266 (1311)
T TIGR00606 187 ALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMK 266 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 162 MQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYT 241 (1209)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (1209)
+..++..+......+...+..+...+.+.|++++++|...+.+|...+..++.++..++.++..+...+..++...+.+.
T Consensus 267 l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~ 346 (1311)
T TIGR00606 267 LDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELL 346 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988558999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 242 AEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWD 321 (1209)
Q Consensus 242 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1209)
.++|.|+++...|..++..+..++.+++..|++.|++..|+++.++..|...+...+......+.....++...+...+.
T Consensus 347 ~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~ 426 (1311)
T TIGR00606 347 VEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQE 426 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q 000957 322 SYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIR 401 (1209)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~i~ 401 (1209)
.+++++..+....+.+......+......+......+..+... ...+..++.++..++..+..+........++..|.
T Consensus 427 ~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 504 (1311)
T TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS--SDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 9999999999999988888888888888888777777755543 44589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 000957 402 QKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQAL 481 (1209)
Q Consensus 402 ~~~~~i~~l~~el~~l~~e~~~l~~~~~~~~~l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 481 (1209)
..+.++..++.++..|..++..+++.+..++++.++++++..+...+..+...|+..|..++| .|+ . + +.|..++
T Consensus 505 ~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~-~-~--~~l~~~~ 579 (1311)
T TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG-YFP-N-K--KQLEDWL 579 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC-C-c--HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 884 2 4 8889999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHH
Q 000957 482 RALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRDVQ 561 (1209)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 561 (1209)
......+..++..+..++..+..++..+..+...+..+..++..+...+. ..|+ +++|+..|..++..+..+
T Consensus 580 ~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-------~~~~-~~~~~~~L~~~~~~l~~~ 651 (1311)
T TIGR00606 580 HSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-------DVCG-SQDEESDLERLKEEIEKS 651 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCC-chhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888887777555 5665 589999999999999999
Q ss_pred HhhhhhHHhHHHhhHHHHHHH--hhCCCCccccCCCCch-HHHHHHHHHHHHHhccHHHHHHhhHhhhhhHHHHHHHHhh
Q 000957 562 KSKYNIADGMRQMFDPFERVA--RAHHVCPCCERPFSAE-EEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKL 638 (1209)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~--~~~~~c~~C~r~~~~~-e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 638 (1209)
..+++.+.+...||.+|++.+ ...+|||+|.|+|+.+ +...|+.++...+...|.....+...+..++..++.+..+
T Consensus 652 ~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l 731 (1311)
T TIGR00606 652 SKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGL 731 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 9999999999999766 4479999999999999999999999999999999999999
Q ss_pred HhHHHHHHhccccCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000957 639 RMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDL 718 (1209)
Q Consensus 639 ~~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ei~~l~~ei~~l 718 (1209)
+|.+..|..+...++|.++..+..++.++..+...++.....+..+...+..++++.+++..|.++..++..++.+|..+
T Consensus 732 ~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l 811 (1311)
T TIGR00606 732 APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQ 811 (1311)
T ss_pred hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000957 719 EYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEEL 798 (1209)
Q Consensus 719 ~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 798 (1209)
+..+...+ +..++++++.++..++.++..++.++..++.+...++.++..++..+..+......+...+.....+..++
T Consensus 812 ~~~l~~~~-~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L 890 (1311)
T TIGR00606 812 AAKLQGSD-LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQL 890 (1311)
T ss_pred HHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998777 56799999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Q 000957 799 EHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDE 878 (1209)
Q Consensus 799 ~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~ 878 (1209)
.++...+..+...+..++..+.++.+++..+...+..++...+.....++..++.+...++.+..+...|..|...+++.
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~ 970 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDD 970 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 000957 879 RFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGV 958 (1209)
Q Consensus 879 ~l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~~~~ 958 (1209)
.+.++..++..+...+..++.++..+..++..+...+.++...++++.+|+.|+.....+.++..+|..|+.++++++.
T Consensus 971 qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~- 1049 (1311)
T TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQV- 1049 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000957 959 STFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDK 1038 (1209)
Q Consensus 959 ~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~ 1038 (1209)
..+..++..+..+++.+.+..+.+.|++..+..+|..+..+|..+.|++++++|+..+++++|+.+++.||.+|+.+||+
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~ 1129 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQ 1129 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999965899999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCc---c--ccchhHHHHHHHHcCCccccccCCCChhhhhhhh
Q 000957 1039 ALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSE---G--AGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLAS 1113 (1209)
Q Consensus 1039 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~s 1113 (1209)
+||.||+.+|.+||++++++|+.+|.|+++++|.+.++.. . .....|+|.+++..|+....+++.|||||++|||
T Consensus 1130 ~~~~~~~~~~~~~n~~~~~~w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~ 1209 (1311)
T TIGR00606 1130 AIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLAS 1209 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHhhcCCCCChHHHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhh
Confidence 9999999999999999999999999999999999965532 1 2234567777766677778888999999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1114 LIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1114 l~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
||||++||++|+.+|++|+|||||+|||+.++..|...|..++..+....|++|||||||+.|+..+|+...+++||+|.
T Consensus 1210 ~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1210 LIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred HhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 99999999999999999999999999999999999999999876543345899999999999999999999999999999
Q ss_pred ecCCccccccccc
Q 000957 1194 KDDHQHSIIEAQE 1206 (1209)
Q Consensus 1194 ~~~~~~s~~~~~~ 1206 (1209)
++..+.|+|.+++
T Consensus 1290 ~~~~~~~~~~~~~ 1302 (1311)
T TIGR00606 1290 KNEDQCSEIVKCS 1302 (1311)
T ss_pred eccccCceeEeeC
Confidence 9999999997654
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.9e-41 Score=438.73 Aligned_cols=210 Identities=23% Similarity=0.325 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Q 000957 940 KFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQL 1019 (1209)
Q Consensus 940 ~l~~ei~~l~~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~ 1019 (1209)
.+..++..++.++..+++||. ..+ .+|..+.++|.....++
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~--------------------------~Ai-------------ee~e~~~~r~~~l~~~~ 986 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNL--------------------------RAI-------------EEYEEVEERYEELKSQR 986 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCCh--------------------------hHH-------------HHHHHHHHHHHHHHHHH
Confidence 678899999999999999887 444 58999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCC-ccccchhHHHHHHHHcCCccc
Q 000957 1020 KTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDS-EGAGTRSYSYKVLMQTGDAEL 1098 (1209)
Q Consensus 1020 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1098 (1209)
.+...+...|...+..++..+...|..+|..||..|..+|..+|+|+.+......++. ...|. .+...+++.++
T Consensus 987 ~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Gi-----ei~a~ppgK~~ 1061 (1163)
T COG1196 987 EDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGI-----EISARPPGKKL 1061 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCc-----EEEEECCCCCc
Confidence 9999999999999999999999999999999999999999999998776655443222 12222 24445566667
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..++.||||||.|+||++.|||.++ .|+||+||||++++||..|+..|+.+|.+. ..++|||||||...++.
T Consensus 1062 ~~l~~LSGGEKsLtAlAllFAi~~~--~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~------s~~sQFIvIThr~~~m~ 1133 (1163)
T COG1196 1062 QSLSLLSGGEKSLTALALLFAIQKY--RPAPFYVLDEVDAALDDANVERVARLIKEM------SKETQFIVITHRKGTME 1133 (1163)
T ss_pred cchhhcCCcHHHHHHHHHHHHHHhh--CCCCeeeeccchhhccHHHHHHHHHHHHHh------CcCCeEEEEEcChHHHH
Confidence 7778999999999999999999877 999999999999999999999999999987 37899999999999998
Q ss_pred HhhhHhhhhcCcEEeecCCcccccccccc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQHSIIEAQEI 1207 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~s~~~~~~~ 1207 (1209)
.++..+||++..+|+|.+..+++
T Consensus 1134 ------~ad~l~GVtm~~~GvS~vvsv~l 1156 (1163)
T COG1196 1134 ------AADRLVGVTMQEKGVSKVVSVDL 1156 (1163)
T ss_pred ------HHHHHeeeEeecCCceEEEEeeH
Confidence 89999999999989998887765
No 4
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8e-40 Score=379.51 Aligned_cols=992 Identities=16% Similarity=0.191 Sum_probs=544.9
Q ss_pred hheeeccCCC-----CCCCCCc---hhhHHhhHHhhhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 47 NVIFVHQDEA-----NWPLQDP---STLKKKFDDIFSATRYTK-------ALEVIKKLHKDQAQEIKTYKLKLENLQTLK 111 (1209)
Q Consensus 47 ~VifchQees-----~wpl~ep---~~Lkk~fDdIf~a~ky~k-------ale~lk~~rke~~~~lK~~~~~l~~lk~~k 111 (1209)
|=...-|+|- .-|=+.. --+.+|++||+|+.+|.. -+++|...+.+..+.+|....+++++...+
T Consensus 225 NRFLILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k 304 (1293)
T KOG0996|consen 225 NRFLILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPK 304 (1293)
T ss_pred ceeeeehhhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344456653 3564432 569999999999999998 788899999999999999999999999999
Q ss_pred HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 112 DAAYKLRES---------------ISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTL 176 (1209)
Q Consensus 112 e~a~~~~~~---------------i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1209)
+.|-.+..+ +.....++.....+...+.+.+.+....+.. ...............++.....+
T Consensus 305 ~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~--e~~~~~~k~e~~~~~~~e~~~~~ 382 (1293)
T KOG0996|consen 305 NEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDI--ESNEEVEKNEAVKKEIKERAKEL 382 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHH
Confidence 998887642 1222333333333333333333333333221 11111222222222333333344
Q ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000957 177 FEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMS 256 (1209)
Q Consensus 177 ~~~~~~l~~~~~~~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~ 256 (1209)
......++..+. .++..+...++.++++...+.+++.+++....++.+++...+..+..+..++.+...|...+...+.
T Consensus 383 kn~~~~~k~~~~-~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~ 461 (1293)
T KOG0996|consen 383 KNKFESLKKKFQ-DLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEER 461 (1293)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666 7788888888888888888888888888888888888888888888888887777777766654332
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 257 RMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQ 336 (1209)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 336 (1209)
.+.+.. ..+......+.......+.++..+...+..++.++...+..
T Consensus 462 ~l~e~~---------------------------------~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaese 508 (1293)
T KOG0996|consen 462 ELDEIL---------------------------------DSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESE 508 (1293)
T ss_pred HHHHHH---------------------------------HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 11222222222333333444444444444444444444332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 337 KQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKA 416 (1209)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~i~~l~~el~~ 416 (1209)
+.--...-..-+..+..+... |......+.... ..+..+...|..+..++.+...++..
T Consensus 509 l~~L~~~~~~~~~~~e~lk~~-------------------L~~~~~~~~e~~--~~l~~~k~~l~~~k~e~~~~~k~l~~ 567 (1293)
T KOG0996|consen 509 LDILLSRHETGLKKVEELKGK-------------------LLASSESLKEKK--TELDDLKEELPSLKQELKEKEKELPK 567 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHhHHH
Confidence 222211111222222222222 222222222111 11123333344444555555555555
Q ss_pred HHHHHHHHhcCh-HHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHhcCCCCCCchHHHHHHHHHHHHHHHH
Q 000957 417 LNREKDVLAGDS-EDRVKLALKKAELENHKK---KHKKIIDEYK----DKIRDVLKGRLPLDRDLKKEITQALRALLTEF 488 (1209)
Q Consensus 417 l~~e~~~l~~~~-~~~~~l~~~~~~l~~k~~---~l~~~~~~~~----~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1209)
+..+...+..+. ..+.++...+..++.-.. -+..+..... +.|.+.+|+-...+..|+.+|.+++..+.- +
T Consensus 568 ~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~Ldy-i 646 (1293)
T KOG0996|consen 568 LRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDY-I 646 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhccccce-E
Confidence 555555444432 224444444443333222 2222222222 233344444444466899999886665543 3
Q ss_pred HHHhHhHHHHHHHHHHHHH-HHHHHHHHH----HHhH---------HHHHHHHHHH----HHHHHHhhhhcCChhhHHHH
Q 000957 489 DDLSSKSREADKEVNMLQM-KIQEVTDNL----SKHR---------KDVDSKKRFI----ESKLESLNQQIFSIDTYQKV 550 (1209)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~l----~~~~---------~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~ 550 (1209)
+++....++.|+..+.. +++.++..+ .--. ...+.+=..+ +...++++.++.+ +.+.+.
T Consensus 647 --VVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrd-tLV~d~ 723 (1293)
T KOG0996|consen 647 --VVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYFALRD-TLVADN 723 (1293)
T ss_pred --EeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHHHHhh-hhhhcC
Confidence 58899999999999887 777766322 2111 1111111111 1122234444443 667777
Q ss_pred HHHH-HHHHHHHH-hhhhhHHhHHHhhHHHHHHHhhCCCCccccCCCCchHHHHHHHHHHHHHhccHHHHHHhhHhhhhh
Q 000957 551 LDSA-KEKRDVQK-SKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNA 628 (1209)
Q Consensus 551 l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~r~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 628 (1209)
|+++ +-.+...+ ..+.+++| ..+..+|.+++.|.....+.+..-+ . -..-.+..+..++..+...
T Consensus 724 LeQAtRiaygk~rr~RVvTL~G---------~lIe~SGtmtGGG~~v~~g~mg~~~---~-~t~~s~~~v~~le~~l~~~ 790 (1293)
T KOG0996|consen 724 LEQATRIAYGKDRRWRVVTLDG---------SLIEKSGTMTGGGKKVKGGRMGTSI---R-VTGVSKESVEKLERALSKM 790 (1293)
T ss_pred HHHHHHHhhcCCCceEEEEecc---------eeecccccccCCCCcCCCCCCCCcc---c-cCCCCHHHHHHHHHHHHHH
Confidence 7777 44555544 67888888 6778888888875333111000000 0 0001112223333333333
Q ss_pred HHHHHHH-HhhHhHHHHHHhccccCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHH
Q 000957 629 DSYFQQL-DKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQE 707 (1209)
Q Consensus 629 ~~~~~~l-~~l~~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~i~~l~~e 707 (1209)
...+..+ ..+......+..+. ..+|.++..+..+..+...+...++.+...+.++++. +.....+...+..+...
T Consensus 791 ~~~~~~~~~~~~~~ee~~~~lr-~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~---~~k~~~d~~~l~~~~~~ 866 (1293)
T KOG0996|consen 791 SDKARQHQEQLHELEERVRKLR-ERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA---VLKKVVDKKRLKELEEQ 866 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhccCcHHHHHHHHHH
Confidence 3222222 11122223333444 4677777777777777777777777777777666655 33445555556666777
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 708 IQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEK-LRDEQRYMENDLSNIQIRWHTLREEKVKAAN 786 (1209)
Q Consensus 708 i~~l~~ei~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~-l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ 786 (1209)
|..+..+++.++.+-. ..+.+..++.++..+..+.-. .+..+.....++..+...++.+...+..-..
T Consensus 867 ie~l~kE~e~~qe~~~-----------Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~ 935 (1293)
T KOG0996|consen 867 IEELKKEVEELQEKAA-----------KKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDR 935 (1293)
T ss_pred HHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcc
Confidence 7777777776541110 023444444444444332211 1122222223333333333333333222222
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 787 TLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIAS 866 (1209)
Q Consensus 787 ~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 866 (1209)
.+...+..+.+++..+.....++..+.+.+..+......+..++.+..+.+.+....+... ...+..+..
T Consensus 936 ---~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~-------k~~~e~i~k 1005 (1293)
T KOG0996|consen 936 ---NIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDL-------KSELENIKK 1005 (1293)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 2344455555555555555555555555555555555555555544444444444444443 344444444
Q ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHH--HHHHHH
Q 000957 867 KIKEYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKV--DKFASE 944 (1209)
Q Consensus 867 ~i~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~~~~~~~~l--~~l~~e 944 (1209)
....+... .+. ++.+++.+..++..++..+......++.+.-..-. +-...-..+...+..+..++ ..+...
T Consensus 1006 ~~~~lk~~----rId-~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~t-E~~~~~~~~~~~~Eeleae~~~~~i~e~ 1079 (1293)
T KOG0996|consen 1006 SENELKAE----RID-IENKLEAINGELNEIESKIKQPEKELKKLSLCNMT-ETRPQIELDVESPEELEAEMLEDNINEK 1079 (1293)
T ss_pred HHHHHHHh----hcc-HHHHHHHHHHHHHHHHhhhhhHHHhhCccccccch-hhccccccccCChHHHHhhhcHhhHHHH
Confidence 43333221 222 45555666666666666666555444433311100 00000000001111111111 112223
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Q 000957 945 IESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEM 1024 (1209)
Q Consensus 945 i~~l~~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~ 1024 (1209)
|.-|+.+...+..|+. ..+ .+|......|......+.....
T Consensus 1080 i~~lE~~~~~l~~vd~--------------------------~~i-------------~eY~~k~~~y~~rv~~l~~~t~ 1120 (1293)
T KOG0996|consen 1080 IALLEKRVEELREVDL--------------------------GVI-------------AEYAKKVELYLKRVAELEKFTQ 1120 (1293)
T ss_pred HHHHHHHHHHhcCCCh--------------------------HHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444422243 333 4788888888888888888777
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccC-CccccchhHHHHHHHHcCCccccccCC
Q 000957 1025 ANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSD-SEGAGTRSYSYKVLMQTGDAELEMRGR 1103 (1209)
Q Consensus 1025 ~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1103 (1209)
..++....+..|....+.-|+..|..|...+.++||.+-.|++++.-.+.+. |+..|.. ..++++-..|..++.
T Consensus 1121 kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~GGdAeLElVDslDPFseGV~-----FSVrPpKKSWK~I~N 1195 (1293)
T KOG0996|consen 1121 KRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITLGGDAELELVDSLDPFSEGVM-----FSVRPPKKSWKNISN 1195 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEeeccCCCcccCce-----EEeeCchhhhhhccc
Confidence 7788888888899999999999999999999999999877877765433332 2222221 111223344677889
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhH
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQR 1183 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~ 1183 (1209)
||||+|+|+||++-|||+. +.|.|+|||||.+|+||..|+.-++.+|++- ..|.||||||...++++
T Consensus 1196 LSGGEKTLSSLALVFALH~--YkPTPlYVMDEIDAALDfkNVSIVanYIkEr------TkNAQFIIISLRnnMFE----- 1262 (1293)
T KOG0996|consen 1196 LSGGEKTLSSLALVFALHH--YKPTPLYVMDEIDAALDFKNVSIVANYIKER------TKNAQFIIISLRNNMFE----- 1262 (1293)
T ss_pred CCcchhHHHHHHHHHHHHc--cCCCCceehhhHHHhhccccchhHHHHHHHh------ccCCeEEEEEehhhHHH-----
Confidence 9999999999988888865 4999999999999999999999999999864 68999999999999999
Q ss_pred hhhhcCcEEeecCCc-ccc
Q 000957 1184 QHAEKYYRVAKDDHQ-HSI 1201 (1209)
Q Consensus 1184 ~~~~~~~~v~~~~~~-~s~ 1201 (1209)
.++...||++..+. .|+
T Consensus 1263 -La~rLvGIYKtdn~Tksv 1280 (1293)
T KOG0996|consen 1263 -LANRLVGIYKTDNCTKSV 1280 (1293)
T ss_pred -HHhhheeeEeecCcccee
Confidence 89999999998643 444
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=5.8e-40 Score=421.73 Aligned_cols=241 Identities=17% Similarity=0.268 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHH
Q 000957 935 KAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFD 1014 (1209)
Q Consensus 935 ~~~l~~l~~ei~~l~~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~ 1014 (1209)
..++.++..+|..+........+ +.+..++.++...+..+.+.+..+.+.+..+.+.+..+...+. .|......+..
T Consensus 626 ~~~l~~~r~~i~~l~~~~~~~~~-e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e--~~~~~~~~~~~ 702 (880)
T PRK02224 626 RERLAEKRERKRELEAEFDEARI-EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE--ELEELRERREA 702 (880)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 33555666666666655555555 6677777777777777777777777777777777766665554 34444444433
Q ss_pred HHHHHHHHHHHH---HhHHHHHHHHHHHHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCccccchhHHHHHHH
Q 000957 1015 QLIQLKTTEMAN---KDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLM 1091 (1209)
Q Consensus 1015 ~~i~~~~~~~~~---~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1091 (1209)
....+....... ..|...+..+.. .........+...++.+|..+|++..+..|.+..+ |.+..
T Consensus 703 ~~~~~~~l~~~~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----------~~i~~ 769 (880)
T PRK02224 703 LENRVEALEALYDEAEELESMYGDLRA---ELRQRNVETLERMLNETFDLVYQNDAYSHIELDGE----------YELTV 769 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCeeEEEecCC----------cceee
Confidence 323332222221 222222222222 22333345666777777777665544444433211 12211
Q ss_pred Hc-CCccccccCCCChhhhhhhhHHHHHHHHHHhccC------CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1092 QT-GDAELEMRGRCSAGQKVLASLIIRLALAETFCLN------CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1092 ~~-~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~------~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
.. ++. ...+..||||++++++|++|||++++++.+ ||++||||||+|||+.++..++.+|..+ ...|
T Consensus 770 ~~~~g~-~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~-----~~~~ 843 (880)
T PRK02224 770 YQKDGE-PLEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESM-----RRLG 843 (880)
T ss_pred eCCCCC-ccChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHH-----HhcC
Confidence 11 222 223568999999999999999999998752 3789999999999999999999999887 2334
Q ss_pred -cEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC-cccccc
Q 000957 1165 -FQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH-QHSIIE 1203 (1209)
Q Consensus 1165 -~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~-~~s~~~ 1203 (1209)
.||||||||+.++. .+++.+.|.+++. ..|.|.
T Consensus 844 ~~qviiish~~~~~~------~ad~~~~~~~~~~~~~~~~~ 878 (880)
T PRK02224 844 VEQIVVVSHDDELVG------AADDLVRVEKDPTTNRSSVE 878 (880)
T ss_pred CCeEEEEECChHHHH------hcCeeEEeecCCCcCccccc
Confidence 49999999999997 6888899988763 344443
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=4.3e-39 Score=432.07 Aligned_cols=210 Identities=18% Similarity=0.227 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Q 000957 938 VDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLI 1017 (1209)
Q Consensus 938 l~~l~~ei~~l~~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i 1017 (1209)
+..+..++..+..++..+++||. ..+ .+|..+..+|.....
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~--------------------------~Ai-------------~~~~~~~~~~~~l~~ 993 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNM--------------------------LAI-------------QEYEEVLKRLDELKE 993 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCh--------------------------HHH-------------HHHHHHHHHHHHHHH
Confidence 45667777777777777777665 333 479999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhcc--CCccccchhHHHHHHHHcCC
Q 000957 1018 QLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHS--DSEGAGTRSYSYKVLMQTGD 1095 (1209)
Q Consensus 1018 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1095 (1209)
++..+......|...+..|+......|..+|..|+..|+.+|+.++ |+.+.. .+.. ++...|. .+...+++
T Consensus 994 q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l~-~~~~~l-~~~~~~~~~~~~~-----~~~~~~~~ 1066 (1164)
T TIGR02169 994 KRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAELS-GGTGEL-ILENPDDPFAGGL-----ELSAKPKG 1066 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEE-EecCCCCcccCCe-----EEEEEcCC
Confidence 9999999999999999999999999999999999999999999999 555432 2211 1111111 11222334
Q ss_pred ccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1096 AELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1096 ~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
....+++.|||||+++++|++.||+.. +.||||+||||||+|||+.++..|..+|..+ ..+.|||||||+..
T Consensus 1067 ~~~~~~~~lSgge~~~~~la~~~~~~~--~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~------~~~~~~i~~t~~~~ 1138 (1164)
T TIGR02169 1067 KPVQRLEAMSGGEKSLTALSFIFAIQR--YKPSPFYAFDEVDMFLDGVNVERVAKLIREK------AGEAQFIVVSLRSP 1138 (1164)
T ss_pred CCCCcchhcCcchHHHHHHHHHHHHHh--cCCCCcEEecccccccCHHHHHHHHHHHHHh------cCCCeEEEEECcHH
Confidence 444566789999999877766666643 4799999999999999999999999999887 23579999999998
Q ss_pred HHHHhhhHhhhhcCcEEeecCCcccccccccc
Q 000957 1176 FAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEI 1207 (1209)
Q Consensus 1176 ~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~ 1207 (1209)
++. ++++.|+|++..+|+|.|.++.+
T Consensus 1139 ~~~------~~d~~~~~~~~~~g~S~~~~~~~ 1164 (1164)
T TIGR02169 1139 MIE------YADRAIGVTMRRNGESQVFGLKL 1164 (1164)
T ss_pred HHH------hcceeEeEEEecCCeeEEEeccC
Confidence 886 88999999998789999887654
No 7
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=400.89 Aligned_cols=148 Identities=11% Similarity=0.271 Sum_probs=107.9
Q ss_pred cccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCCCchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 26 RCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLE 105 (1209)
Q Consensus 26 k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~lK~~~~~l~ 105 (1209)
...+++..|+.+| |+.+|.|||||||++..||+..|+.+++.||+|||++.|.++.+.++...+++...+..+...+.
T Consensus 109 ~~~~~~~~i~~~~--~~~~f~~~~~~~Qg~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 186 (880)
T PRK03918 109 GDSSVREWVERLI--PYHVFLNAIYIRQGEIDAILESDESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIK 186 (880)
T ss_pred cHHHHHHHHHHhc--CHHHhceeEEEeccchHHHhcCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888855 57999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 106 NLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRST 175 (1209)
Q Consensus 106 ~lk~~ke~a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (1209)
.+.........++..+..+...+..+..++..+..++..+...+..+......+..+..++..+...+..
T Consensus 187 ~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~ 256 (880)
T PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRK 256 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655555555555555555555555555555555555555544444444444444444444333333
No 8
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=387.78 Aligned_cols=213 Identities=22% Similarity=0.254 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000957 961 FETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKAL 1040 (1209)
Q Consensus 961 ~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~~ 1040 (1209)
+..++..+...+..+.+.++.+.|.+..+..++..+..++. .|...+..++++..+..++..|..+++++.
T Consensus 679 ~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~---------~~~~~~~~l~~~~~~~~~l~~~r~~l~k~~ 749 (895)
T PRK01156 679 IEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIN---------DINETLESMKKIKKAIGDLKRLREAFDKSG 749 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44444555555556666666666666666666666555443 566677778888888899999999999876
Q ss_pred HHHhh--hcHHHHHHHHhhhcccccCCcchhhhhhccCCccccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHHH
Q 000957 1041 MRFHT--MKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1041 ~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
++++- .....+...+..+|..+ |.+++.+.+..+.. .. ++ ++.....+..|||||++++||++||
T Consensus 750 ~~~~I~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~-~~----~~------~~~~~~~~~~lS~G~~~~~~la~rl 816 (895)
T PRK01156 750 VPAMIRKSASQAMTSLTRKYLFEF--NLDFDDIDVDQDFN-IT----VS------RGGMVEGIDSLSGGEKTAVAFALRV 816 (895)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh--CCCccceeecCCee-EE----EE------eCCccCccccCCHhHHHHHHHHHHH
Confidence 55521 11222333333333222 22333333222111 00 11 1111233457999999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC-cEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN-FQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~-~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
|||++|+.+|++++|||||+|||+.++..|..+|...+. ...| +|+||||||+.++. ++++.+.|.+.|
T Consensus 817 ala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~---~~~~~~~ii~ish~~~~~~------~~d~ii~~~~~~- 886 (895)
T PRK01156 817 AVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLK---DSSDIPQVIMISHHRELLS------VADVAYEVKKSS- 886 (895)
T ss_pred HHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHH---hcCCCCeEEEEECchHHHH------hcCeEEEEEecC-
Confidence 999999999999999999999999999999998876531 1123 59999999999986 788888999886
Q ss_pred cccccccc
Q 000957 1198 QHSIIEAQ 1205 (1209)
Q Consensus 1198 ~~s~~~~~ 1205 (1209)
|.|.|...
T Consensus 887 ~~s~v~~~ 894 (895)
T PRK01156 887 GSSKVIPL 894 (895)
T ss_pred CeeEEeeC
Confidence 88877653
No 9
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.8e-36 Score=339.55 Aligned_cols=939 Identities=15% Similarity=0.180 Sum_probs=513.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 103 KLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQK 182 (1209)
Q Consensus 103 ~l~~lk~~ke~a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1209)
+-..-+-...+.++..+.|++.+.++.+...- ++++|.|...++.+-+..+.+|+.+...++.+..-+-++++-..+
T Consensus 167 EAAGTrmye~kKe~A~ktiekKetKlkEi~~l---L~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~ 243 (1174)
T KOG0933|consen 167 EAAGTRMYENKKEAAEKTIEKKETKLKEINTL---LREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAE 243 (1174)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555667888888888777666 899999999999999999999999999999998888777643332
Q ss_pred HH-----HHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000957 183 QY-----AALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREK-NDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMS 256 (1209)
Q Consensus 183 l~-----~~~~~~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~ 256 (1209)
.. ..+. +....+..+.+........+..++.++.+++.+. .+.......+...+..++....+....+.....
T Consensus 244 ~~~~~~~~~i~-e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~ 322 (1174)
T KOG0933|consen 244 EKRKNSAHEIE-EMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKE 322 (1174)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222 2333333333333333333444444444433322 222223344445555555544444444444443
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 257 RMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQ 336 (1209)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 336 (1209)
.+..-...++++.+.+. + ....+..-...+......+... ........+.+...+..++++.+.
T Consensus 323 tl~~e~~k~e~i~~~i~----------e--~~~~l~~k~~~~~~~~~~~~~~----ke~~~~~s~~~e~~e~~~eslt~G 386 (1174)
T KOG0933|consen 323 TLNGEEEKLEEIRKNIE----------E--DRKKLKEKEKAMAKVEEGYEKL----KEAFQEDSKLLEKAEELVESLTAG 386 (1174)
T ss_pred HHhhhHHHHHHHHHhHH----------H--HHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333333333222110 0 0011111111222222222211 112222223333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 337 KQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKA 416 (1209)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~i~~l~~el~~ 416 (1209)
+++.-..-.....++......+...+.. ++.....+.+++.++...+.+.. .+...-.....+++.+..+++.
T Consensus 387 ~Ss~~~~e~~l~~ql~~aK~~~~~~~t~-----~k~a~~k~e~~~~elk~~e~e~~--t~~~~~~~~~~~ld~~q~eve~ 459 (1174)
T KOG0933|consen 387 LSSNEDEEKTLEDQLRDAKITLSEASTE-----IKQAKLKLEHLRKELKLREGELA--TASAEYVKDIEELDALQNEVEK 459 (1174)
T ss_pred cccCccchhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhHhh--hhhHHHHHHHHHHHHHHHHHHH
Confidence 2211111122223333333333333333 55556667777777766554443 4445555667788889999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHH-HHHHHHHHHHHHHhHhH
Q 000957 417 LNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEIT-QALRALLTEFDDLSSKS 495 (1209)
Q Consensus 417 l~~e~~~l~~~~~~~~~l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 495 (1209)
+...+..+.........|...+..+..-...+......+...+... +|.+. ++.+.|+ ....++...+-.+.+..
T Consensus 460 l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~---~f~Y~-dP~~nfdrs~V~G~Va~Li~vkd~~ 535 (1174)
T KOG0933|consen 460 LKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANY---EFTYQ-DPEPNFDRSKVKGLVAKLIKVKDRS 535 (1174)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccccC-CCCccchHHHHHHHHHHHheeCcch
Confidence 9999999999888777777777777776666666666665555321 33332 2233332 33344444444444433
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHH--------------HHhH------HHHHHHHH------H-------HHHHHH
Q 000957 496 READKEVNMLQMKIQE-------VTDNL--------------SKHR------KDVDSKKR------F-------IESKLE 535 (1209)
Q Consensus 496 ~~~~~~~~~~~~~l~~-------~~~~l--------------~~~~------~~l~~~~~------~-------~~~~l~ 535 (1209)
....-.++.-..-++. ....| +... .-++.... . ++..+.
T Consensus 536 ~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~ 615 (1174)
T KOG0933|consen 536 YATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDDELK 615 (1174)
T ss_pred HHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCHHHH
Confidence 3111111111000000 00000 0000 00000000 0 001111
Q ss_pred HhhhhcCChhhHHHHHHHHHHHHHH--HHhhhhhHHhHHHhhHHHHHHHhhCCCCccccCCCCchHHHHHHHHHHHHHhc
Q 000957 536 SLNQQIFSIDTYQKVLDSAKEKRDV--QKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAAS 613 (1209)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~r~~~~~e~~~~~~~l~~~~~~ 613 (1209)
.....++|...+++.++.|+..... ..+.-.++.| .+...+|..++..|.++.+-+..
T Consensus 616 ~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~G---------DV~dP~GtlTGGs~~~~a~~L~~----------- 675 (1174)
T KOG0933|consen 616 KAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEG---------DVYDPSGTLTGGSRSKGADLLRQ----------- 675 (1174)
T ss_pred HHHHHHhCceEEecCHHHHHHhhcccccccceeeecC---------ceeCCCCcccCCCCCCcccHHHH-----------
Confidence 1112233334455555555433333 2233344444 33445555555555554331111
Q ss_pred cHHHHHHhhHhhhhhHHHHHHHHhhHhHHHHHHhccccCcchHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHhhHHH
Q 000957 614 SAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAF---DDVLGVLAQIKADKES 690 (1209)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~~---e~~~~~l~~~~~~~~~ 690 (1209)
+..+.....+++. .+.++..++.++..+.... ..+...++.....+..
T Consensus 676 ---------------------l~~l~~~~~~~~~--------~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l 726 (1174)
T KOG0933|consen 676 ---------------------LQKLKQAQKELRA--------IQKELEALERELKSLEAQSQKFRDLKQQLELKLHELAL 726 (1174)
T ss_pred ---------------------HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 1122222222222222211 1222222211111111
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 691 VEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNI 770 (1209)
Q Consensus 691 ~~~l~~~~~~i~~l~~ei~~l~~ei~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l 770 (1209)
+.. +.......++..++..+..++...+.++.. ....+..+..++..+...+.+....+ ..++.++
T Consensus 727 ~~~-r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike----------~~~~~k~~~~~i~~lE~~~~d~~~~r---e~rlkdl 792 (1174)
T KOG0933|consen 727 LEK-RLEQNEFHKLLDDLKELLEEVEESEQQIKE----------KERALKKCEDKISTLEKKMKDAKANR---ERRLKDL 792 (1174)
T ss_pred HHH-HHhcChHhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHhhhhh---HhHHHHH
Confidence 110 111122445555666666666654444432 33344444455545444444333322 2234444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 771 QIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQ 850 (1209)
Q Consensus 771 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 850 (1209)
..++..++..+..-... .+.-....+.+.-+.+++..++...+..+..+...++.+..++..+..............
T Consensus 793 ~keik~~k~~~e~~~~~---~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKE---LEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKA 869 (1174)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 44444444433333332 223333444455555666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHH
Q 000957 851 KINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLN 930 (1209)
Q Consensus 851 ~~~l~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~ 930 (1209)
...+......+.....+|..... ..+.|..+....+..++.+.+++..+..+-......+........||.+..+
T Consensus 870 ~~el~~~k~k~~~~dt~i~~~~~-----~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~ 944 (1174)
T KOG0933|consen 870 QAELKDQKAKQRDIDTEISGLLT-----SQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKR 944 (1174)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhh-----HHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHH
Confidence 66666666666666766666554 5666677777777777777777777777777777777766666667765432
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhhcC-CcccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhc
Q 000957 931 --------YRETKAKVDKFASEIESLEERVLKIG-GVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLK 1001 (1209)
Q Consensus 931 --------~~~~~~~l~~l~~ei~~l~~~~~~~~-~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~ 1001 (1209)
|......+.+...++..|......++ .||+ ..+
T Consensus 945 ~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~--------------------------~~m------------ 986 (1174)
T KOG0933|consen 945 LFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNP--------------------------KNM------------ 986 (1174)
T ss_pred hhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCH--------------------------HHH------------
Confidence 33333345555566666655555555 2233 222
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCcccc
Q 000957 1002 QAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAG 1081 (1209)
Q Consensus 1002 ~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1209)
.++..++.+|.+..-+.++.+.....|.+.+..||.......-.+|..||..||.+|..+.||+.+... |+.
T Consensus 987 -~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~LLPga~AkL~-------Ppe 1058 (1174)
T KOG0933|consen 987 -DMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTLLPGAMAKLE-------PPE 1058 (1174)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCcccccc-------CCC
Confidence 467788899999999999999999999999999999999999999999999999999999999866543 111
Q ss_pred chhHH--HHHHHHcCCccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhh
Q 000957 1082 TRSYS--YKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDR 1159 (1209)
Q Consensus 1082 ~~~~~--~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~ 1159 (1209)
..... +.|-+.+|+.|.+..+.||||||.|+||+| .||+..+.|+|+|||||++++||..|...+..+|+..+
T Consensus 1059 g~~~~dGLEvkV~~G~iWKeSL~ELSGGQRSLVALsL--IlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF--- 1133 (1174)
T KOG0933|consen 1059 GKTVLDGLEVKVKFGGIWKESLSELSGGQRSLVALSL--ILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--- 1133 (1174)
T ss_pred CCccccceEEEEEeCccHHHHHHHhcCchHHHHHHHH--HHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC---
Confidence 11111 123344688999999999999999999955 45556779999999999999999999999999999863
Q ss_pred ccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1160 KGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1160 ~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
.|.||||||....++. .++..+++.+.+ |+|+|.+
T Consensus 1134 ---~~sQFIVVSLKeGMF~------NANvLFrtrF~D-G~Stv~r 1168 (1174)
T KOG0933|consen 1134 ---THSQFIVVSLKEGMFN------NANVLFRTRFVD-GVSTVQR 1168 (1174)
T ss_pred ---CCCeEEEEEchhhccc------cchhhheeeeec-Cceeeee
Confidence 5789999999999998 899999998876 8888765
No 10
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.3e-35 Score=340.62 Aligned_cols=962 Identities=14% Similarity=0.166 Sum_probs=506.0
Q ss_pred eccCCCC-CCCCCchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 51 VHQDEAN-WPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEI-------KTYKLKLENLQTLKDAAYKLRESIS 122 (1209)
Q Consensus 51 chQees~-wpl~ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~l-------K~~~~~l~~lk~~ke~a~~~~~~i~ 122 (1209)
+.|++.. --..-|++|-..|++|+||-.|.+.+|.++.......... |....++..++..++.++.++...+
T Consensus 129 VFQGdVE~IA~k~PkElt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkd 208 (1141)
T KOG0018|consen 129 VFQGDVEKIAGKNPKELTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKD 208 (1141)
T ss_pred EecChHHHHhccCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4565443 3445899999999999999999999999999887777665 7777888888888888988887665
Q ss_pred H-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Q 000957 123 Q-DQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNW 201 (1209)
Q Consensus 123 ~-~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~eL~~~ 201 (1209)
+ ...+....-+++..++..++....++..+..... .+....+.....+.........+..++. .++..+.+....
T Consensus 209 e~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~---~~~~~~d~~e~ei~~~k~e~~ki~re~~-~~Dk~i~~ke~~ 284 (1141)
T KOG0018|consen 209 EKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIP---KLKERMDKKEREIRVRKKERGKIRRELQ-KVDKKISEKEEK 284 (1141)
T ss_pred HHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhH---HHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5 5566677778888888888777777764443333 3333333333333333333334444444 444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCCCC
Q 000957 202 KNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAP 281 (1209)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (1209)
+.. .+.+-.+.........++...+..+...+.....+...+..++.++.........+...++...+..+- ++ +
T Consensus 285 l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~-~l---n 359 (1141)
T KOG0018|consen 285 LAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGS-EL---N 359 (1141)
T ss_pred Hhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cC---C
Confidence 444 444445555555555666666666666666666666666666666666666666666666666553330 00 1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000957 282 FSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSF 361 (1209)
Q Consensus 282 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 361 (1209)
+.+.++. ++..+..+...+- ..++..+.......+..+.............+......+...
T Consensus 360 l~d~~~~---------------ey~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~ 421 (1141)
T KOG0018|consen 360 LKDDQVE---------------EYERLKEEACKEA---LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERL 421 (1141)
T ss_pred cchHHHH---------------HHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333 2222222221111 111111111111111111111111111111111111111111
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 000957 362 ELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAEL 441 (1209)
Q Consensus 362 ~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~i~~l~~el~~l~~e~~~l~~~~~~~~~l~~~~~~l 441 (1209)
... ...+...+..+...+.....+. ..+.........+...++.++..+..++..+..... .
T Consensus 422 ~~~-----~~~L~~~i~s~~~~~~e~~~d~--~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~-----------e 483 (1141)
T KOG0018|consen 422 DKR-----RNKLAAKITSLSRSYEELKHDL--DSLESLVSSAEEEPYELNEELVEVLDQLLDASADRH-----------E 483 (1141)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHhhcH--HHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhc-----------c
Confidence 111 1112222222222222222221 133333445556666677777777777666655443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-HHHHHH-
Q 000957 442 ENHKKKHKKIIDEYKDKIRDVLK-----GRLPLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMK-IQEVTD- 514 (1209)
Q Consensus 442 ~~k~~~l~~~~~~~~~~l~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~- 514 (1209)
..+.......+..+...|++++| |.+... .|..++..+++...+.+ +++.-.++..|+..+... +...+.
T Consensus 484 ~sR~~~~~eave~lKr~fPgv~GrviDLc~pt~k-kyeiAvt~~Lgk~~daI--iVdte~ta~~CI~ylKeqr~~~~TFl 560 (1141)
T KOG0018|consen 484 GSRRSRKQEAVEALKRLFPGVYGRVIDLCQPTQK-KYEIAVTVVLGKNMDAI--IVDTEATARDCIQYLKEQRLEPMTFL 560 (1141)
T ss_pred cHHHHHHHHHHHHHHHhCCCccchhhhcccccHH-HHHHHHHHHHhcccceE--EeccHHHHHHHHHHHHHhccCCcccc
Confidence 33444455666777778888887 333333 78999999999999988 899999999999998874 333221
Q ss_pred HHHHhH-----HHHHHHHH---HH------HHHHHHhhhhcCChhhHHHHHHHHHHHHHH--HHhhhhhHHhHHHhhHHH
Q 000957 515 NLSKHR-----KDVDSKKR---FI------ESKLESLNQQIFSIDTYQKVLDSAKEKRDV--QKSKYNIADGMRQMFDPF 578 (1209)
Q Consensus 515 ~l~~~~-----~~l~~~~~---~~------~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 578 (1209)
.+..+. ..+..... .+ +..-.++..+||+ ..+|+.++.|...... .+-...+++|
T Consensus 561 Pld~i~v~~~~e~lr~~~g~rlv~Dvi~ye~e~eka~~~a~gn-~Lvcds~e~Ar~l~y~~~~r~k~valdG-------- 631 (1141)
T KOG0018|consen 561 PLDSIRVKPVNEKLRELGGVRLVIDVINYEPEYEKAVQFACGN-ALVCDSVEDARDLAYGGEIRFKVVALDG-------- 631 (1141)
T ss_pred chhhhhcCcccccccCcCCeEEEEEecCCCHHHHHHHHHHhcc-ceecCCHHHHHHhhhcccccceEEEeee--------
Confidence 111110 11111100 00 1223355577775 7788877777544332 2344555666
Q ss_pred HHHHhhCCCCccccCC--CCchHHHHHHHHHHHHHhccHHHHHHhhHhhhhhHHHHHHHHhhHhHHHHHHhccccCcchH
Q 000957 579 ERVARAHHVCPCCERP--FSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVA 656 (1209)
Q Consensus 579 ~~~~~~~~~c~~C~r~--~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~~l~~l 656 (1209)
..+.++|.+++...+ |+..+++ .|+.+- ..+..++.++..... +..... ..+..+
T Consensus 632 -tl~~ksGlmsGG~s~~~wdek~~~----~L~~~k-------~rl~eel~ei~~~~~----------e~~~v~-~~i~~l 688 (1141)
T KOG0018|consen 632 -TLIHKSGLMSGGSSGAKWDEKEVD----QLKEKK-------ERLLEELKEIQKRRK----------EVSSVE-SKIHGL 688 (1141)
T ss_pred -eEEeccceecCCccCCCcCHHHHH----HHHHHH-------HHHHHHHHHHHHhhh----------hHHHHH-HHHHHH
Confidence 334455665554322 5544443 222222 222222222222111 222222 344556
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCH---
Q 000957 657 EKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVET-ADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTM--- 732 (1209)
Q Consensus 657 e~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~-i~~l~~ei~~l~~ei~~l~~~l~~~~~~~~~~--- 732 (1209)
+..+.-+..++..++..+.....++....+.+.....-...+.. |......+..|+..+..+++.+..++|....+
T Consensus 689 e~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir 768 (1141)
T KOG0018|consen 689 EMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIR 768 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeee
Confidence 66666666666666666666666666666665544433333333 67788888888888888888887666433332
Q ss_pred --HHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHH
Q 000957 733 --EEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDL 810 (1209)
Q Consensus 733 --~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~ 810 (1209)
++.+- .+....+..++..++..+..+++..+. .+...++. .....+..++.+++.+..
T Consensus 769 ~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve-----------------~~~~~v~~~~~~~~~~~~ 828 (1141)
T KOG0018|consen 769 EYEEREL-QQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVE-----------------RWERSVEDLEKEIEGLKK 828 (1141)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHH-----------------HHHHHHHHHHHhHHhhHH
Confidence 22222 222333333333333333333332222 11111111 111222222222222222
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Q 000957 811 DEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQS 890 (1209)
Q Consensus 811 ~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~l~~~ 890 (1209)
.-..+...+.++ ++++. .. ...+..+..+++.... .+..+..++..+
T Consensus 829 ~e~~~~k~i~e~-~~~e~--------------k~-------------k~~~~~~~~e~~e~~k-----~~~~~~~~~tkl 875 (1141)
T KOG0018|consen 829 DEEAAEKIIAEI-EELEK--------------KN-------------KSKFEKKEDEINEVKK-----ILRRLVKELTKL 875 (1141)
T ss_pred HHHHHHHHHhhH-HHHHH--------------HH-------------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 222222222221 11111 00 1122222222222222 233333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccH
Q 000957 891 ESEVKSCKIRTDEILVELDRFKDIVRNQDQIRR----N-----IEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTF 961 (1209)
Q Consensus 891 ~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~----~-----l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~~~~~~~ 961 (1209)
...+..++..|..+..+...+-....-.+..-. . +-..++|-.+.+++. ++.+|.+....+..+.| |.
T Consensus 876 ~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~-L~~kl~e~~~~l~~~~P-n~- 952 (1141)
T KOG0018|consen 876 DKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK-LQQKLEEKQSVLNRIAP-NL- 952 (1141)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceecccccccccHHHH-HHHHHHHHHHHHHHhCc-ch-
Confidence 444444444444444444444433221110000 0 012234555555555 77778888888888766 65
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000957 962 ETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALM 1041 (1209)
Q Consensus 962 ~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~~~ 1041 (1209)
++++.-=..-..+++ .+|..+.+.-+. +.+.|.+.-+..-..+|
T Consensus 953 -------------------------kA~~~~d~v~~~~~~-~EfE~ark~ak~----------ak~~F~~VK~~R~~~F~ 996 (1141)
T KOG0018|consen 953 -------------------------KALERLDEVRFQEIN-EEFEAARKEAKK----------AKNAFNKVKKKRYERFM 996 (1141)
T ss_pred -------------------------HHHhhhhhHHHHHhh-HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 222110000033333 445444433333 33445555555556666
Q ss_pred HHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCccccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHHHHHH
Q 000957 1042 RFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1042 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+|......|.+++..+. .+. |+.+-.+.-...|+..|.+... .+++.-+.++..||||+|+.|||+|.|||+
T Consensus 997 ~~F~~va~~Id~IYK~Lt-nt~-g~AyL~~en~~EPyl~GIky~~-----~pP~KRFr~m~~LSGGEKTvAaLALLFaih 1069 (1141)
T KOG0018|consen 997 ACFEHVADNIDRIYKELT-NTE-GQAYLGLENPEEPYLDGIKYHC-----MPPGKRFRPMDNLSGGEKTVAALALLFAIH 1069 (1141)
T ss_pred HHHHHHHHHHHHHHHHhc-ccc-cceeecCCCCCcchhcCccccc-----cCCccccCchhhcCccHHHHHHHHHHHHhc
Confidence 677666666666666655 223 5555444444444433332111 123333344458999999999999999997
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
-. +|+||++|||++++||..|+..++.+|+ ..|+||||||....|.. .++...||+++..+.|.
T Consensus 1070 sy--~PaPFfvlDEiDAALDntNi~kvasyIr--------~~~~Q~IvISLK~~~y~------kadaLVGvyr~~~~~S~ 1133 (1141)
T KOG0018|consen 1070 SY--KPAPFFVLDEIDAALDNTNIGKVASYIR--------SSNFQFIVISLKEEFYQ------KADALVGVYRDQEDCSK 1133 (1141)
T ss_pred cC--CCCCceehhhHHHHhhhccHHHHHHHHh--------cCCceEEEEeccHHHhh------hhhceeeeccCcccccc
Confidence 64 8999999999999999999999999887 36899999999999998 89999999999666666
Q ss_pred cccccc
Q 000957 1202 IEAQEI 1207 (1209)
Q Consensus 1202 ~~~~~~ 1207 (1209)
+-.-++
T Consensus 1134 vlt~dL 1139 (1141)
T KOG0018|consen 1134 VLTFDL 1139 (1141)
T ss_pred eEEeec
Confidence 654444
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=5.1e-33 Score=375.07 Aligned_cols=184 Identities=21% Similarity=0.293 Sum_probs=133.4
Q ss_pred hhhhHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hhcHHHHHHHHhhhccccc----CCcchhhhh
Q 000957 1004 QYKDID----KRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFH---TMKMEEINKIIRELWQQTY----RGQDIDYIR 1072 (1209)
Q Consensus 1004 ~y~~~~----~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~~~~~i~~~~~~~~~~~~----~~~~~~~~~ 1072 (1209)
+|..+. ++|.....++..+..+..+|...+..++..+...| ..+|..|+..|+.+|..+| +|+.+ ++.
T Consensus 983 e~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~-~~~ 1061 (1179)
T TIGR02168 983 ELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEA-ELR 1061 (1179)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEE
Confidence 566666 88888888888888888888888888888888888 7778888877777777665 44433 222
Q ss_pred hc--cCCccccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHH
Q 000957 1073 IH--SDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAA 1150 (1209)
Q Consensus 1073 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~ 1150 (1209)
+. .++...|. .+...+++.....++.|||||+++++|++.|++ .++.||||+||||||+|||+.++..|..
T Consensus 1062 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~--~~~~~~~~~~lDE~~~~ld~~~~~~~~~ 1134 (1179)
T TIGR02168 1062 LTDPEDLLEAGI-----EIFAQPPGKKNQNLSLLSGGEKALTALALLFAI--FKVKPAPFCILDEVDAPLDDANVERFAN 1134 (1179)
T ss_pred eCCCCcccccCc-----eEEEeCCCCccccccccCccHHHHHHHHHHHHH--HccCCCCeEEecCccccccHHHHHHHHH
Confidence 22 11111111 111122333345668999999996555443333 2358899999999999999999999999
Q ss_pred HHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccccccc
Q 000957 1151 ALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEI 1207 (1209)
Q Consensus 1151 ~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~ 1207 (1209)
+|..+ . .+.|||||||++.++. ++++.++|++.++|.|.|...++
T Consensus 1135 ~~~~~-----~-~~~~~i~~sh~~~~~~------~~d~~~~~~~~~~~~~~~~~~~~ 1179 (1179)
T TIGR02168 1135 LLKEF-----S-KNTQFIVITHNKGTME------VADQLYGVTMQEKGVSKIVSVDL 1179 (1179)
T ss_pred HHHHh-----c-cCCEEEEEEcChhHHH------HhhhHeeeeeccCCceeEeeccC
Confidence 99887 2 3478999999999886 68889999999778998876653
No 12
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-33 Score=358.62 Aligned_cols=96 Identities=34% Similarity=0.435 Sum_probs=88.9
Q ss_pred ccccCCCChhhhhhhhHHHHHHHHHHhccC--CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1098 LEMRGRCSAGQKVLASLIIRLALAETFCLN--CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1098 ~~~~~~lSgG~k~l~sl~ir~~la~~~~~~--~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
..++++|||||+.++||+|||||+.++.++ +++|||||||++||+.+...++..|..+ ...|+|||||||+..
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i-----~~~~~qiiIISH~ee 884 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEEL-----LSDGRQIIIISHVEE 884 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHH-----HhcCCeEEEEeChHH
Confidence 677889999999999999999999999999 9999999999999999999999999998 344899999999999
Q ss_pred HHHHhhhHhhhhcCcEEeecCCcccccccc
Q 000957 1176 FAQLIGQRQHAEKYYRVAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1176 ~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~ 1205 (1209)
|.+ .+++.+.|.+.| |.|.|..+
T Consensus 885 l~e------~~~~~i~V~k~~-g~S~v~~~ 907 (908)
T COG0419 885 LKE------RADVRIRVKKDG-GRSRVEVV 907 (908)
T ss_pred HHH------hCCeEEEEEecC-Ccceeeec
Confidence 998 899999999999 88877653
No 13
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.4e-33 Score=317.12 Aligned_cols=988 Identities=14% Similarity=0.174 Sum_probs=510.7
Q ss_pred eccCCCC-CCCCCchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 51 VHQDEAN-WPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTE 129 (1209)
Q Consensus 51 chQees~-wpl~ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~~i~~~~~~~~ 129 (1209)
++|+.-+ ...+..+...+.+-++-|+.-|-.-.+. .+..++..+.+-.++..-+..++.++.
T Consensus 139 V~QGkI~~La~akD~eRL~LLkeVaGtrvYeerree-----------------Slkim~ET~qK~ekI~ell~yieerLr 201 (1200)
T KOG0964|consen 139 VPQGKINELANAKDSERLELLKEVAGTRVYEERREE-----------------SLKIMEETKQKREKINELLKYIEERLR 201 (1200)
T ss_pred eechhhHHhhcCCcHHHHHHHHHhcccchhHHhHHH-----------------HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5777654 3556778888999999999988764322 233333333334444444444444444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhhcCCHHHHHHHHHH
Q 000957 130 ALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFE-----QQQKQYAALAEEIEDTDEELKNWKNN 204 (1209)
Q Consensus 130 ~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~l~~~~~eL~~~~~~ 204 (1209)
.|.++..++.. ++.+...+..+++ ...++...+. .++.......+.-.+
T Consensus 202 eLEeEKeeL~~-------------------------Yqkldk~rr~lEYtiYdrEl~E~~~~l~-~le~~r~~~~e~s~~ 255 (1200)
T KOG0964|consen 202 ELEEEKEELEK-------------------------YQKLDKERRSLEYTIYDRELNEINGELE-RLEEDRSSAPEESEQ 255 (1200)
T ss_pred HHHHhHHHHHH-------------------------HHHHHHhHhhhhhhhhhhHHHHHHHHHH-HHHHHHhccchhhhh
Confidence 44444333322 2222222222222 2222333333 333333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCCCCCCh
Q 000957 205 FEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHNLGSLPNAPFSN 284 (1209)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (1209)
+...+...+..+..+..++.++...+..+..+...+..+.......+..++-.+......+..-. -..
T Consensus 256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~------------q~r 323 (1200)
T KOG0964|consen 256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNE------------QQR 323 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhh------------hhh
Confidence 45555555555666666666666666665555555555555544445444444444444332100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000957 285 EAALNFINRIRSRLSDLERDLEDKKKSDELALK---MAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSF 361 (1209)
Q Consensus 285 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 361 (1209)
......+..+...+.....++......++.... .+...+..++.....+= ..+.+..++.+.-..-..+..++..+
T Consensus 324 ~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~-~Kqgr~sqFssk~eRDkwir~ei~~l 402 (1200)
T KOG0964|consen 324 NLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL-AKQGRYSQFSSKEERDKWIRSEIEKL 402 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhhccccccCcHHHHHHHHHHHHHHH
Confidence 112223345555555555666655554443332 33333333333322221 22222333333333333333444333
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH----HHHHHHHH
Q 000957 362 ELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSE----DRVKLALK 437 (1209)
Q Consensus 362 ~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~i~~l~~el~~l~~e~~~l~~~~~----~~~~l~~~ 437 (1209)
.+. +.......+.++.++..++..+. .....|..++..+.+....+..+..+...++...+ .|..++..
T Consensus 403 ~~~-----i~~~ke~e~~lq~e~~~~e~~l~--~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 403 KRG-----INDTKEQENILQKEIEDLESELK--EKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHH-----HhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 34444444555555555553332 45556666666666666666666666666555433 36667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH----
Q 000957 438 KAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVT---- 513 (1209)
Q Consensus 438 ~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 513 (1209)
.+.+......+...++.....+..+.+..+..+-+....+-..++ ..+.+.-+...+..-....+.++...++.-
T Consensus 476 E~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k-~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iV 554 (1200)
T KOG0964|consen 476 EKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELK-PNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIV 554 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhc-ccccceehhhhhcCCHHHHhHHhhhcccceEEEE
Confidence 777777777777666666666666655444332111111111111 223444444444444555555555444311
Q ss_pred ---HHHHHh-HHHHHHHHH-HH---H-HHHHHhhhhcCChhhHHHHHHH--HHHHHHHHHhhhhhHHhHHHhhHHHHHHH
Q 000957 514 ---DNLSKH-RKDVDSKKR-FI---E-SKLESLNQQIFSIDTYQKVLDS--AKEKRDVQKSKYNIADGMRQMFDPFERVA 582 (1209)
Q Consensus 514 ---~~l~~~-~~~l~~~~~-~~---~-~~l~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (1209)
+++++. -..+..... .+ + +.+..-....|...+..+.+.. +.-.+..+...+..-.-...-...+...+
T Consensus 555 VdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~a 634 (1200)
T KOG0964|consen 555 VDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLA 634 (1200)
T ss_pred ecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCCCCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHH
Confidence 111111 011111110 00 0 0000000001100111111111 12222222222111111111123333444
Q ss_pred h--hCCCCccccCCCCch-HHH-HHHHHHHHHHhccHHHHHHhhHhhhhhHHHHHHHHhhHhHHHHHHhccccCcchHHH
Q 000957 583 R--AHHVCPCCERPFSAE-EED-EFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEK 658 (1209)
Q Consensus 583 ~--~~~~c~~C~r~~~~~-e~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~~l~~le~ 658 (1209)
+ .-+|.++-|-..+.. .+. ++.+.-++++..... +.....++.++++.++. + ...+.... .+|..+..
T Consensus 635 k~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~-~~~~~~~~~~l~~~L~~---~---r~~i~~~~-~~i~q~~~ 706 (1200)
T KOG0964|consen 635 KKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKN-VNESRSELKELQESLDE---V---RNEIEDID-QKIDQLNN 706 (1200)
T ss_pred HhcCCCeEEeccceecccCCccccchhhhhhHHHHHhh-hHHHHHHHHHHHHHHHH---H---HHHHHHHH-HHHHHHHH
Confidence 3 344777766555332 332 455444444422222 13334444444433333 2 33333333 46677778
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHH
Q 000957 659 NLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVET-ADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQL 737 (1209)
Q Consensus 659 ~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~-i~~l~~ei~~l~~ei~~l~~~l~~~~~~~~~~~e~~~ 737 (1209)
.++.++.++......++.+..++..+......+.....+... +..+...+..++.+...+++++++.. .++...+...
T Consensus 707 ~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel-~sqLt~ee~e 785 (1200)
T KOG0964|consen 707 NMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSEL-FSQLTPEELE 785 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH-HhhcCHHHHH
Confidence 888888888888888888888888888888777776555555 78888889999999999998887655 3333344456
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000957 738 ELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAE 817 (1209)
Q Consensus 738 ~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~ 817 (1209)
.+..++.++..+..++..+..+.-.+...+..++..+ ..++..++.++...|..+. ..+...
T Consensus 786 ~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l----------------~~kL~~r~~~l~~ei~~~~--d~~~~~ 847 (1200)
T KOG0964|consen 786 RLSKLNKEINKLSVKLRALREERIDIETRKTALEANL----------------NTKLYKRVNELEQEIGDLN--DSSRRS 847 (1200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHhhhhHHHHHhhhcc--cccchh
Confidence 7778888888888887777777666666666666554 2344445555544444431 112222
Q ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Q 000957 818 ASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQ---EIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEV 894 (1209)
Q Consensus 818 ~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~i 894 (1209)
++.....++......++.+..++......+......... .......+.+..... -+....+
T Consensus 848 el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~----------------~~~dKe~ 911 (1200)
T KOG0964|consen 848 ELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDN----------------INFDKEL 911 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------hhhhHHH
Confidence 333333333333333333333333222222221111111 111111111111100 0111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHH
Q 000957 895 KSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDR 974 (1209)
Q Consensus 895 ~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~~~~~~~~~e~~~l~~~~~~ 974 (1209)
..+...-..+-.+-..+.+.|+....+. -+...+|.. ....++.+.+..+..++..+..||.
T Consensus 912 Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp--~daf~ky~~--~~~~el~kkL~~~neelk~ys~VNK-------------- 973 (1200)
T KOG0964|consen 912 EKLVRRKHMLLKKREECCEKIRELGVLP--EDAFEKYQD--KKSKELMKKLHRCNEELKGYSNVNK-------------- 973 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHhcc--CCHHHHHHHHHHHHHHHhhcchhhH--------------
Confidence 2222222222222223333333332222 111112222 2456677777777777777777676
Q ss_pred HHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 000957 975 LLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKI 1054 (1209)
Q Consensus 975 l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~ 1054 (1209)
+++ ..|.+..+.-..+......+....+.+...+.+|+.........+|..|...
T Consensus 974 ------------kAl-------------dQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~kn 1028 (1200)
T KOG0964|consen 974 ------------KAL-------------DQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKN 1028 (1200)
T ss_pred ------------HHH-------------HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333 3555555555555555666666678889999999999999999999999999
Q ss_pred HhhhcccccCCcchhhhhhccC----C---c--cccc-hhHHHHHHHHcC----------CccccccCCCChhhhhhhhH
Q 000957 1055 IRELWQQTYRGQDIDYIRIHSD----S---E--GAGT-RSYSYKVLMQTG----------DAELEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~----~---~--~~~~-~~~~~~~~~~~~----------~~~~~~~~~lSgG~k~l~sl 1114 (1209)
|..+|..+.||+-...+.-..+ . . ..+. ......+-++.| ..+...+.+||||||.++||
T Consensus 1029 FsevF~~LVp~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI~VSFnskq~E~~~m~QLSGGQKsvvAL 1108 (1200)
T KOG0964|consen 1029 FSEVFSRLVPGGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISIKVSFNSKQGETLEMEQLSGGQKSVVAL 1108 (1200)
T ss_pred HHHHHHHhCCCCceeehhhccccccccccccccccccccccccchhhccceeEEEEeecCccHHHHHHHhcCchHHHHHH
Confidence 9999999998876633222111 0 0 0000 000111222221 12233446999999999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
+|.|||.++ .|+|||+|||.+++||+.++.+++.+|+++ +...|||.+|..++++. .++.+|+|.+
T Consensus 1109 aLIFaIQrc--DPAPFYlfDEIDAaLDaQyR~aVa~lIkel------S~~aQFI~TTFRpEll~------vAdKfygV~f 1174 (1200)
T KOG0964|consen 1109 ALIFAIQRC--DPAPFYLFDEIDAALDAQYRTAVADLIKEL------SDSAQFITTTFRPELLS------VADKFYGVKF 1174 (1200)
T ss_pred HHHHHHHhc--CCcchhhHhHHhhhccHHHHHHHHHHHHHH------hhccceEeecccHHHHH------HHHhhhceee
Confidence 999999875 999999999999999999999999999998 34589999999999998 9999999988
Q ss_pred cCCcccccc
Q 000957 1195 DDHQHSIIE 1203 (1209)
Q Consensus 1195 ~~~~~s~~~ 1203 (1209)
.. -+|.|.
T Consensus 1175 ~n-KvS~V~ 1182 (1200)
T KOG0964|consen 1175 EN-KVSTVD 1182 (1200)
T ss_pred cc-ccccce
Confidence 76 555544
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.6e-29 Score=328.80 Aligned_cols=924 Identities=11% Similarity=0.098 Sum_probs=778.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 85 VIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQD 164 (1209)
Q Consensus 85 ~lk~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~ 164 (1209)
...+.........+.+...++.++........++..+..++..+..+...+..+..++..+..++..+......++....
T Consensus 183 ~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~ 262 (1311)
T TIGR00606 183 RYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLS 262 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 165 QISTMTARRSTLFEQQQKQYAALAEEIEDTD-EELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAE 243 (1209)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 243 (1209)
.+..+...+..+..........+. .+..++ ..+......+...+..+...+.....++..+...+..+..++..+...
T Consensus 263 ~~~~l~~ql~~l~~~~~~~~~~~~-rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~ 341 (1311)
T TIGR00606 263 KIMKLDNEIKALKSRKKQMEKDNS-ELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQE 341 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887766666666 555533 568888899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHHcC----CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 244 ITNLLSEAGAHMSRMNERDSTIQKLFARHN----LGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMA 319 (1209)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1209)
.+.+....+.++.....+...+..+..... .+++++ |+...+.. ..+..++..+...+......+......+
T Consensus 342 ~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 417 (1311)
T TIGR00606 342 KTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDG--FERGPFSE--RQIKNFHTLVIERQEDEAKTAAQLCADL 417 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC--CCCcccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887766 445444 55442221 3478899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 000957 320 WDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEIN 399 (1209)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~ 399 (1209)
+..+..++..+..+...+......+......+......+...... ...+......+..++.++..+...+........
T Consensus 418 ~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1311)
T TIGR00606 418 QSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKE--LQQLEGSSDRILELDQELRKAERELSKAEKNSL 495 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccChHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999988877 666778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CchHHHHH
Q 000957 400 IRQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPL--DRDLKKEI 477 (1209)
Q Consensus 400 i~~~~~~i~~l~~el~~l~~e~~~l~~~~~~~~~l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~~~--~~~~~~~~ 477 (1209)
...+..+|...+.++..+..++..++......++.+..+.++..+..++......+. .+...++..+.. + .| +.
T Consensus 496 ~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~~~-~~-~~- 571 (1311)
T TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIR-KIKSRHSDELTSLLG-YF-PN- 571 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC-CC-CC-
Confidence 999999999999999999999999999999999999999999999999998888887 444334432221 2 33 22
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 000957 478 TQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEK 557 (1209)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 557 (1209)
+ ..+...+......+..++..+..++..+..+...++....++..+..++..+. ..+. +. ..++.++..
T Consensus 572 -~--~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~----~~i~--~~--~~~~~~~~~ 640 (1311)
T TIGR00606 572 -K--KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYE----DKLF--DV--CGSQDEESD 640 (1311)
T ss_pred -c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh--cC--CCchhHHHH
Confidence 2 67788888889999999999999999999999999988888888888777543 2222 11 135778888
Q ss_pred HHHHHhhhhhHHhHHHhh---HHHHHHHhhCC--CCccccCCCCch-HHHHHHHHHHHHHhccHHHHH-HhhHhhhhhHH
Q 000957 558 RDVQKSKYNIADGMRQMF---DPFERVARAHH--VCPCCERPFSAE-EEDEFVKKQRVKAASSAEHMK-VLSLESSNADS 630 (1209)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~c~~C~r~~~~~-e~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 630 (1209)
+..+...+.........+ ..|+..+.... .-..||..|.++ ........+..++........ ........+..
T Consensus 641 L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~ 720 (1311)
T TIGR00606 641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKK 720 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 888888888877665555 68888888888 778899999888 777777788888765555421 23344444444
Q ss_pred HHHHHHhhHhHHHHHHhccccCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 000957 631 YFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQL 710 (1209)
Q Consensus 631 ~~~~l~~l~~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ei~~ 710 (1209)
....+..+....+.+..+. .+ ...+++.++.++..+...+..+...++.+...+..+..-...+..+......|..
T Consensus 721 ~~~~~e~l~~l~~~~~~~~--~l--~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r 796 (1311)
T TIGR00606 721 KEKRRDEMLGLAPGRQSII--DL--KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMER 796 (1311)
T ss_pred HHHHHHHHHHhhhhHHHHH--HH--HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5555566666666666665 22 3478999999999999999999999999999988888888888888888999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000957 711 WQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRD 790 (1209)
Q Consensus 711 l~~ei~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~ 790 (1209)
+..++..++.++.... ...........+++++.++..+..++..+...+..+......+...++.++.++..+......
T Consensus 797 ~~~ei~~l~~qie~l~-~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klk 875 (1311)
T TIGR00606 797 FQMELKDVERKIAQQA-AKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQ 875 (1311)
T ss_pred HHHHHHHHHHHHHHHH-HHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986433 121111113477889999999999999999999999999999999999998888888877777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 791 VKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKE 870 (1209)
Q Consensus 791 ~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~ 870 (1209)
+.........++..+..+...+..+...+..+..++..+.+.+..+..+..............+...+..+......+..
T Consensus 876 l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1311)
T TIGR00606 876 IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 871 YYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEE 950 (1209)
Q Consensus 871 ~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~~~~~~~~l~~l~~ei~~l~~ 950 (1209)
+......|.-..+..++..++.++..+...+..++.++..+...+......-.++....+....+..+..+..++..+..
T Consensus 956 ~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~ 1035 (1311)
T TIGR00606 956 YMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEE 1035 (1311)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888889999999999999999999999999999999998877777777777777777777778999999999
Q ss_pred HHhhcCCcccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhH-HHHHHHHHHHHHHHHHHHHhH
Q 000957 951 RVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDI-DKRHFDQLIQLKTTEMANKDL 1029 (1209)
Q Consensus 951 ~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~-~~~y~~~~i~~~~~~~~~~~l 1029 (1209)
++..+.. ..+......+..+...+..+++.+.+....+.|+++.+..++. ..-.++ +..|++...+++.......-.
T Consensus 1036 eI~~l~~-~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~-~l~~eL~e~~yk~a~~ryrka~i~~~~~ 1113 (1311)
T TIGR00606 1036 ELKQHLK-EMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIK-HFKKELREPQFRDAEEKYREMMIVMRTT 1113 (1311)
T ss_pred HHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcchHHHHHHHHHHHHHHHHHHH
Confidence 9999998 8888999999999999999999999999999999999999998 656666 467888877776555444433
Q ss_pred HHHHHHHH
Q 000957 1030 DRYYNALD 1037 (1209)
Q Consensus 1030 ~~~~~~l~ 1037 (1209)
...+.-|+
T Consensus 1114 ~~~~~d~~ 1121 (1311)
T TIGR00606 1114 ELVNKDLD 1121 (1311)
T ss_pred HHHHHHHH
Confidence 33333333
No 15
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=6e-23 Score=265.52 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=79.1
Q ss_pred ccccccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCC-CchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000957 23 LSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQ-DPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYK 101 (1209)
Q Consensus 23 ~s~k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~-ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~lK~~~ 101 (1209)
+.++..+++..|+.+||+++..|.+||||||+++.|+|. .|+..++.|++|||+..|.+..+.+++..++....+..+.
T Consensus 121 ~~~~~~~~~~~i~~llGld~~~F~~~~~l~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~ 200 (1042)
T TIGR00618 121 LAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLT 200 (1042)
T ss_pred cccchHHHHHHHHHHhCCCHHHHhhheeecccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999999876 7999999999999999999999999999999999998888
Q ss_pred HHHHHHH
Q 000957 102 LKLENLQ 108 (1209)
Q Consensus 102 ~~l~~lk 108 (1209)
..+..+.
T Consensus 201 ~~~~~~~ 207 (1042)
T TIGR00618 201 LRSQLLT 207 (1042)
T ss_pred HHhhccc
Confidence 8886654
No 16
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.97 E-value=8.6e-23 Score=245.93 Aligned_cols=1009 Identities=13% Similarity=0.092 Sum_probs=606.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 98 KTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLF 177 (1209)
Q Consensus 98 K~~~~~l~~lk~~ke~a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1209)
++...+++.++...++...++.+...+...+.+....+.....+..++..++........+++....++..+......+.
T Consensus 195 kd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~ 274 (1294)
T KOG0962|consen 195 KDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLD 274 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhhhhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000957 178 EQQQKQYAALAEEIEDTDE-ELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMS 256 (1209)
Q Consensus 178 ~~~~~l~~~~~~~l~~~~~-eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~ 256 (1209)
.....+...+. .+...+. -.......+...+..+...+.....++..++..+..+..+...+......+..+.+.++.
T Consensus 275 ~e~~~l~~~~~-~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~ 353 (1294)
T KOG0962|consen 275 SEHKNLKKQIS-RLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQA 353 (1294)
T ss_pred HHHHHHHHHHH-HHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887877777 5555554 555666677777777888888888888888888888888887777777777777777777
Q ss_pred hHHHHHHHHHHHHHHcCC--CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 257 RMNERDSTIQKLFARHNL--GSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIE 334 (1209)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (1209)
....+..+.......... +.+....+..- .++..+...+ .................+......+...+..+.
T Consensus 354 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~---~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~ 427 (1294)
T KOG0962|consen 354 EAEFHQELKRQRDSLIQELAHQYQLDSVESL---EFMAEVKKDF---RNLILERFGGLEDDIKQRKKDIAELETNALDLI 427 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc---chHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 777766665544433331 11111001110 1111111111 111112222222233333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 000957 335 AQKQAKMEIKAGILKHIKEKEN-ERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQK 413 (1209)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~-~i~~~~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~i~~l~~e 413 (1209)
..+................... .....-.. ..........+.+.-.++.........+.+..........+...+..
T Consensus 428 ~~~~~~~~~l~~~~~~~~~~~~~E~k~l~~~--~~~~e~s~~~~~~~~~r~~~~~~~~~s~~~~~~~~~l~e~i~~~q~~ 505 (1294)
T KOG0962|consen 428 KEITDREVSLEAQKRIKDEIKKLESKGLKDK--SFQYEDSTDDLKKLDERLKEAERLLESAEKNNDELALKEKIAEKQNE 505 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHhhhhHhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 3333222222222222222222 11111111 11233444556666666666777777777888888888888888888
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHHHHHHHHh
Q 000957 414 IKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQAL-RALLTEFDDLS 492 (1209)
Q Consensus 414 l~~l~~e~~~l~~~~~~~~~l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 492 (1209)
+..++..+..++...+..+..+..++.++.........-.... .+...+...+. ....|.-.. ..++..+..++
T Consensus 506 ~~~l~~~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~-k~~~~~~~~~~----~~~~~~~~~~~~le~~~~~~~ 580 (1294)
T KOG0962|consen 506 MAQLEIQKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELR-KIKSRLSDEKG----RAIEFPLTNDRSLEKELHKLS 580 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHH-HHHHhcchhhh----hhhccCccchhHHHHHHHHHH
Confidence 8888888888888888888888888777776666554433333 23322222222 122222222 35566666666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHhhhhhHHhHH
Q 000957 493 SKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRDVQKSKYNIADGMR 572 (1209)
Q Consensus 493 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 572 (1209)
..+...+.....+......+..........+... ....+..- .....+|+.+++.+...+..+...+.......
T Consensus 581 ~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~---~~e~~k~~---~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l 654 (1294)
T KOG0962|consen 581 KEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDR---KEEELKSK---EFFLKDESGTIDEYLDLLERLKGEIEKARKDL 654 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHH---HHHHHhhccchhhHHHHHHHHHHHHHHHHhhh
Confidence 6666666666666665555555555554444431 11111111 11124466666777777777666666655444
Q ss_pred Hhh---HHHHHHHhhCCCCccccCCCCch-HHHHHHHHHHHHHhccHHHHHHhhHhhhhhHHHHHHHHhhHhHHHHHHhc
Q 000957 573 QMF---DPFERVARAHHVCPCCERPFSAE-EEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKL 648 (1209)
Q Consensus 573 ~~~---~~~~~~~~~~~~c~~C~r~~~~~-e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l 648 (1209)
.+. ..|++++....+-..||-.|+++ +..++ .++-.++... +...-..+......+................
T Consensus 655 ~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee-~ef~~~l~~~---i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~ 730 (1294)
T KOG0962|consen 655 AMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEE-VEFIKKLESK---IDSAPDKLEEAEVELSKEEKIFEILLKLKPT 730 (1294)
T ss_pred hhhhhHHHHHHHHHHHHhhccCCCccCCccchHHH-HHHHHHHHHH---HhccchhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 443 78888888887778888888776 66566 3444444222 1222222222222222221111111111111
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 000957 649 SKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQG 728 (1209)
Q Consensus 649 ~~~~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ei~~l~~ei~~l~~~l~~~~~~ 728 (1209)
....+.-++..++.+..++......+.......+.....+..+..-...+..+.-....+.....++......+......
T Consensus 731 ~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~ 810 (1294)
T KOG0962|consen 731 FGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELVSE 810 (1294)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11133345556666666766666666666666666666666555555555555555555555556666555555322101
Q ss_pred CCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Q 000957 729 VRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQL 808 (1209)
Q Consensus 729 ~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~ 808 (1209)
..+..+.-..+++++.+...+..+...++.++...+.........++.+..-...+............+...+...+..+
T Consensus 811 l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l 890 (1294)
T KOG0962|consen 811 LDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEEL 890 (1294)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11212233466777788888888888888888888888888888888877777777777777777778888888888888
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Q 000957 809 DLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKS 888 (1209)
Q Consensus 809 ~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~l~ 888 (1209)
...+..+...+..+.+.+..+...+.++..................+....++..+.+.+..+.. ...+..+..
T Consensus 891 ~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~------~~~~~~~~~ 964 (1294)
T KOG0962|consen 891 SEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYK------LNECFEQYG 964 (1294)
T ss_pred HHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHh
Confidence 88888888888888888877777777777777766666555444455555666666666665543 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 000957 889 QSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKH 968 (1209)
Q Consensus 889 ~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~~~~~~~~~e~~~l 968 (1209)
...-. ...+..+...+......++.....-++...--++...+..+..+..++..++.++..++. +.........
T Consensus 965 ~~~~~----~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~-Qi~~~~~~~~ 1039 (1294)
T KOG0962|consen 965 FDDLR----IAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDK-QILEADIKSV 1039 (1294)
T ss_pred hhhhc----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHH
Confidence 22221 223333444444444444433222222222223556667778888888888888888877 7777666667
Q ss_pred HHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcH
Q 000957 969 LLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKM 1048 (1209)
Q Consensus 969 ~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 1048 (1209)
..++..|...+..+..+...+.|++. .|.+....|+..+.+.+......+....|+......++..+-.++
T Consensus 1040 ~ee~~~L~~~~~~l~se~~~~lg~~k---------e~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky 1110 (1294)
T KOG0962|consen 1040 KEERVKLEEEREKLSSEKNLLLGEMK---------QYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKY 1110 (1294)
T ss_pred HHHHHHHHHHHHHhhhHhhHHHHHHH---------HHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666666555 455555667777777777777778888888888888888888888
Q ss_pred HHHHHHHhhhcccccCCcchhhhhhccCCccccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHHHHHHHHhccCC
Q 000957 1049 EEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNC 1128 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~ 1128 (1209)
.......-+.|-..+.|.+...|...-.....|...+.++|.+-.++ .+.+++|.|.|++.+..++.+.+|+.|..+
T Consensus 1111 ~~aLD~Aim~fHs~KMeeiN~iI~elW~~tYrG~Did~IrIrsD~~~---s~~~~rsYnyrVv~~kgd~eldMRGRcSAG 1187 (1294)
T KOG0962|consen 1111 YKALDKAIMQFHSMKMEEINRIIRELWRKTYRGTDIDYIKIRSDSVS---SSDKRRTYNYRVVMVKGDTELDMRGRCSAG 1187 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceEEEeecccc---ccccccccceeEEEEechHHHHhccCccch
Confidence 77777777777777766655555332111112222222233322222 556778888888888888888888888888
Q ss_pred CeEEEeCCCCCCCHHhHHHHHHHHH
Q 000957 1129 GILALDEPTTNLDGPNAESLAAALH 1153 (1209)
Q Consensus 1129 ~~l~lDEp~~~LD~~~~~~~~~~l~ 1153 (1209)
..++++.|+...+..+--..+..|.
T Consensus 1188 QKvLAsliIRLALAEtf~snCgvLA 1212 (1294)
T KOG0962|consen 1188 QKVLASLIIRLALAETFGSNCGVLA 1212 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Confidence 8888888886666655555555444
No 17
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.97 E-value=3.8e-22 Score=255.37 Aligned_cols=87 Identities=13% Similarity=0.205 Sum_probs=80.3
Q ss_pred cccccccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCC-CchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000957 22 CLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQ-DPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTY 100 (1209)
Q Consensus 22 ~~s~k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~-ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~lK~~ 100 (1209)
.+.++..+++..|..++|+++..|.+||+.||+++.=+|. .|+..++.|++|||+.+|.+.-..++...++....+..+
T Consensus 124 ~~~~~~~~v~~~i~~llgl~~~~F~~~v~l~QG~f~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l 203 (1047)
T PRK10246 124 ILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKL 203 (1047)
T ss_pred eeccCchHHHHHHHHHhCCCHHHhhhheeeccccHHHHHhCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999998887 899999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 000957 101 KLKLENLQ 108 (1209)
Q Consensus 101 ~~~l~~lk 108 (1209)
...+..+.
T Consensus 204 ~~~l~~~~ 211 (1047)
T PRK10246 204 QAQASGVA 211 (1047)
T ss_pred HHHHcCCc
Confidence 88886553
No 18
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.4e-24 Score=210.70 Aligned_cols=149 Identities=17% Similarity=0.329 Sum_probs=127.0
Q ss_pred cHHHHHHHHhhhcccc--cC-Ccchhhhhhcc----CCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHH
Q 000957 1047 KMEEINKIIRELWQQT--YR-GQDIDYIRIHS----DSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir 1117 (1209)
....+++.++++||.+ || -|..+++.+.. +......+..+..++..+|..+ ..+|++|||||+| |
T Consensus 71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQ------R 144 (240)
T COG1126 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQ------R 144 (240)
T ss_pred hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHH------H
Confidence 4467889999999998 55 46777776532 1122334456778888998876 5688999999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
+|||||||.+|+++++||||++|||+-+..+...+.++ ...|.|+|+|||++.|+..++|+++++..|.|...|+
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L-----A~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL-----AEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH-----HHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecC
Confidence 99999999999999999999999999999999999999 5679999999999999999999999999999999998
Q ss_pred ccccccccc
Q 000957 1198 QHSIIEAQE 1206 (1209)
Q Consensus 1198 ~~s~~~~~~ 1206 (1209)
+..++..+.
T Consensus 220 p~~~f~~p~ 228 (240)
T COG1126 220 PEEFFDNPK 228 (240)
T ss_pred HHHHhcCCC
Confidence 888887653
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.90 E-value=5.6e-12 Score=162.05 Aligned_cols=135 Identities=12% Similarity=0.221 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cc
Q 000957 881 KELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGG-VS 959 (1209)
Q Consensus 881 ~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~~~-~~ 959 (1209)
.+++.++.........+...+..++..+..+...+.+...-..++.+. +....+.+..+..++++|...+....+ ..
T Consensus 1614 ~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q--~~~aerr~~~l~~E~eeL~~~l~~~~Rarr 1691 (1930)
T KOG0161|consen 1614 NELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQ--LAEAERRLAALQAELEELREKLEALERARR 1691 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443332222222221 444555666677777777766665552 13
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhch--hhhhhHHHHHHHHHH
Q 000957 960 TFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQ--AQYKDIDKRHFDQLI 1017 (1209)
Q Consensus 960 ~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~--~~y~~~~~~y~~~~i 1017 (1209)
.++.+...+....+.+.+..+.+...-..+...|..+..++.. .....+.++++....
T Consensus 1692 ~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~ 1751 (1930)
T KOG0161|consen 1692 QAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQA 1751 (1930)
T ss_pred hhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4556666666666666655555555555555555555555431 134445555555433
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.88 E-value=2.3e-12 Score=166.19 Aligned_cols=226 Identities=13% Similarity=0.225 Sum_probs=126.9
Q ss_pred cccchhhhhhhhhcCCHHhhhhh-----eeeccCCCCCCCCCchhhHHhhHHhhhhhhhHHHHHHHHHHHHHH-------
Q 000957 26 RCADMDREVPALMGVSKAILENV-----IFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQ------- 93 (1209)
Q Consensus 26 k~~~~d~~~~~~lgvs~ail~~V-----ifchQees~wpl~ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~------- 93 (1209)
...++...|..+.|+.-..+..+ +|++|+.+.-+|.-+....+ |-.||++.-|.+....|..--.++
T Consensus 149 ti~Elk~~i~e~~Gl~~~qF~ri~~Y~~~Ll~qG~f~~~L~a~~dR~k-F~kLf~taiy~~i~~~i~~fl~~yll~e~~~ 227 (1486)
T PRK04863 149 TLNELKDKAAALEGVQFKQFNSITDYHSLMFDLGIIPRRLRSSSDRSK-FYRLIEASLYGGISSAITRSLRDYLLPENSG 227 (1486)
T ss_pred CHHHHHHHHHHhcCCceeeeccHHHHHHHHHHCCCchhhhhccchHHH-HHHHHHHHHHhhHHHhHHHHHHHHcCCCChh
Confidence 34466667777778775456665 67789888877877655555 999999999988555555433322
Q ss_pred --------HHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHH
Q 000957 94 --------AQEIKTYKLKLENLQTLKD--------------------------------AAYKLRESISQDQEKTEALKN 133 (1209)
Q Consensus 94 --------~~~lK~~~~~l~~lk~~ke--------------------------------~a~~~~~~i~~~~~~~~~l~~ 133 (1209)
...+..+..-++.++.... .|-.++.+......++.....
T Consensus 228 v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~ 307 (1486)
T PRK04863 228 VRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQY 307 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222221111 111111122222222222222
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHH
Q 000957 134 QMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRE 213 (1209)
Q Consensus 134 ~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~eL~~~~~~~~~~~~~~~ 213 (1209)
.+..+...+.++..++..+......+..... +..........+. .+...+.++...+..+...+....
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyle-----------L~ee~lr~q~ei~-~l~~~LeELee~Lee~eeeLeele 375 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLN-----------LVQTALRQQEKIE-RYQADLEELEERLEEQNEVVEEAD 375 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222222222211111 1111112233344 566677778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 000957 214 SDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDST 264 (1209)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~ 264 (1209)
..+..+..++..++..+..+...+..+...++.++.+...|...+..+++.
T Consensus 376 eeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 376 EQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888777666654
No 21
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.8e-23 Score=210.60 Aligned_cols=153 Identities=19% Similarity=0.260 Sum_probs=131.2
Q ss_pred HhhhcHHHHHHHHhhhcccc--c-CCcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhH
Q 000957 1043 FHTMKMEEINKIIRELWQQT--Y-RGQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1043 ~~~~~~~~i~~~~~~~~~~~--~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl 1114 (1209)
+....+...++.++++||++ + ..|+.+++.+.-... ......++..++..+|..+ ..+|.+|||||||
T Consensus 73 l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQ---- 148 (339)
T COG1135 73 LSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQ---- 148 (339)
T ss_pred CChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhh----
Confidence 44455678899999999998 2 467888887754433 2334456778888888766 4688999999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++|||||+.+|.+|++||||++|||.+..++..+|.+| +..-|.||++|||.|+++..+|+++.++..|+|+.
T Consensus 149 --RVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I----n~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 149 --RVAIARALANNPKILLCDEATSALDPETTQSILELLKDI----NRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred --HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH----HHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence 999999999999999999999999999999999999999 34568999999999999999999999999999999
Q ss_pred cCCcccccccc
Q 000957 1195 DDHQHSIIEAQ 1205 (1209)
Q Consensus 1195 ~~~~~s~~~~~ 1205 (1209)
.|+...+|..|
T Consensus 223 ~G~v~~vF~~P 233 (339)
T COG1135 223 EGTVSEVFANP 233 (339)
T ss_pred eccHHHhhcCc
Confidence 99888888765
No 22
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.9e-21 Score=185.65 Aligned_cols=147 Identities=14% Similarity=0.210 Sum_probs=119.6
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHH----HcCCcc------ccccCCCChhhhhhhhH
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLM----QTGDAE------LEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~lSgG~k~l~sl 1114 (1209)
...++++.++++||.+ |+.+.++++.+.....+... .....++. ...+++ .+....|||||+|
T Consensus 82 d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQ---- 156 (253)
T COG1117 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQ---- 156 (253)
T ss_pred CHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHH----
Confidence 3568999999999998 88999999887544443222 11222222 222221 2345679999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
||+||||++.+|.+|+|||||++|||.+...+.++|.++ ..+.|||||||+|.-+.+++|+..+.+.|+++.
T Consensus 157 --RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL------k~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 157 --RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL------KKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred --HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHH------HhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999999999999999999999999999999999999998 267899999999999999999999999999999
Q ss_pred cCCccccccccc
Q 000957 1195 DDHQHSIIEAQE 1206 (1209)
Q Consensus 1195 ~~~~~s~~~~~~ 1206 (1209)
.|+...+|..|.
T Consensus 229 ~g~T~~iF~~P~ 240 (253)
T COG1117 229 FGPTDKIFTNPK 240 (253)
T ss_pred EcCHHhhhcCcc
Confidence 998888887764
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.84 E-value=3e-14 Score=168.83 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=62.6
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEe-cCHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVIT-HDERFA 1177 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~it-H~~~~~ 1177 (1209)
.....||||||.-+.+++.++|-.+ ..|||.+|||-+.++|..|+.-..++|.+... ..++|+|+|| ||+..+
T Consensus 985 ~d~~gLSGGERSFsTv~lllsLW~~--me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~----~~~~Q~IfiTPqdi~~l 1058 (1074)
T KOG0250|consen 985 RDTRGLSGGERSFSTVCLLLSLWEV--MECPFRALDEFDVFMDMVNRKISMDLLVDFAK----KKGRQFIFITPQDISKL 1058 (1074)
T ss_pred ccccccCcccchHHHHHHHHHHhHh--hcCchhhhhHHHHHHHHHHHHHHHHHHHHHHH----hhcceEEEEccccHhhh
Confidence 3445799999999999888888777 77999999999999999999999999999853 3568999987 577766
Q ss_pred H
Q 000957 1178 Q 1178 (1209)
Q Consensus 1178 ~ 1178 (1209)
.
T Consensus 1059 ~ 1059 (1074)
T KOG0250|consen 1059 N 1059 (1074)
T ss_pred c
Confidence 4
No 24
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.84 E-value=8.3e-13 Score=178.90 Aligned_cols=84 Identities=11% Similarity=0.193 Sum_probs=53.1
Q ss_pred chhhhhhhhhcCCHHhhhhheeeccCCCCCCCC-CchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 29 DMDREVPALMGVSKAILENVIFVHQDEANWPLQ-DPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENL 107 (1209)
Q Consensus 29 ~~d~~~~~~lgvs~ail~~VifchQees~wpl~-ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~lK~~~~~l~~l 107 (1209)
++...+|. +|+++.- ..|.+|++..-++. .|+.+.+.||+++|+..|...++....-.......+..+...+..|
T Consensus 123 ~~~~~l~~-~~i~~~~---~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L 198 (1179)
T TIGR02168 123 DIQDLFLD-TGLGKRS---YSIIEQGKISEIIEAKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNEL 198 (1179)
T ss_pred HHHHHHhc-cCCCccc---chheecccHHHHHcCCHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554 4666533 24778888887776 7999999999999999998766666555444444444444444444
Q ss_pred HHHHHHHHH
Q 000957 108 QTLKDAAYK 116 (1209)
Q Consensus 108 k~~ke~a~~ 116 (1209)
+.....|..
T Consensus 199 ~~q~~~a~~ 207 (1179)
T TIGR02168 199 ERQLKSLER 207 (1179)
T ss_pred HHHHHHHHH
Confidence 444444433
No 25
>PF13514 AAA_27: AAA domain
Probab=99.84 E-value=1.5e-11 Score=160.73 Aligned_cols=204 Identities=19% Similarity=0.208 Sum_probs=125.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000957 959 STFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDK 1038 (1209)
Q Consensus 959 ~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~ 1038 (1209)
..+..+...+...+..+..++..+...+..+...+..+... ..|.++...+......+.......--+.-....|..
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~---~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~ 968 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGD---DDAAELEQEREEAEAELEELAEEWAALRLAAELLEE 968 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555544322 234444444444444444332222223333455777
Q ss_pred HHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCccccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHHH
Q 000957 1039 ALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1039 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
++..|.......+....+.+|..+..| .|..|.+..+..++ .++....+.....+..||+|.+--.-|+|||
T Consensus 969 a~~~~r~~~~p~vl~~As~~f~~LT~G-~Y~~l~~d~d~~~~-------~l~~~~~~G~~~~~~~LS~GT~dQLYLALRL 1040 (1111)
T PF13514_consen 969 AIERYREERQPPVLARASEYFSRLTGG-RYSRLRVDEDGDKP-------VLVVVRADGERVPVEELSRGTRDQLYLALRL 1040 (1111)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhCC-CCceeeeccccCcc-------cceEEecCCeEeeHHHhCHHHHHHHHHHHHH
Confidence 777787777777777777777765433 33333332211000 0111111122234568999999999999999
Q ss_pred HHHHHh-ccC-CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1119 ALAETF-CLN-CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1119 ~la~~~-~~~-~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
|++..+ ... |-.||||.|+.+.|+......+.+|.++ +...|||+-||+.+++..
T Consensus 1041 A~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~l------s~~~QVI~FTch~~l~~~ 1097 (1111)
T PF13514_consen 1041 ALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAEL------SRRRQVIYFTCHEHLVEL 1097 (1111)
T ss_pred HHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHh------ccCCeEEEEeccHHHHHH
Confidence 999998 333 4348889999999999999999999998 345799999999999983
No 26
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.84 E-value=2.1e-10 Score=147.97 Aligned_cols=75 Identities=24% Similarity=0.392 Sum_probs=40.3
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 000957 190 EIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDST 264 (1209)
Q Consensus 190 ~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~ 264 (1209)
.+..++.++......+...+...+.++..+..++.+....+..+...+..+...+..+...++.-..........
T Consensus 1052 ~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~ 1126 (1930)
T KOG0161|consen 1052 DLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQ 1126 (1930)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666666665555555555555555555555555555555555444433333333333
No 27
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.3e-20 Score=186.11 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=111.1
Q ss_pred HHHHHhhhcccccCCc-chhhh-hhccCCc---c-ccchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQTYRGQ-DIDYI-RIHSDSE---G-AGTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~---~-~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
..+.+.++||.+|..- ...++ .+..++. + ......+..++..+|..+ .++|..|||||+| |+|||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~Q------RiaIA 153 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQ------RIAIA 153 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHH------HHHHH
Confidence 4456678899987321 11111 1111111 1 111223667888888765 4677899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
|||+.+|++|||||||++||+.+...++++|.++- ...|.++|+||||..++.++||+++++..|.++..++...+
T Consensus 154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~----~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l 229 (252)
T COG1124 154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELK----KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229 (252)
T ss_pred HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHH----HhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhh
Confidence 99999999999999999999999999999999993 45688999999999999999999999999999999876655
Q ss_pred ccc
Q 000957 1202 IEA 1204 (1209)
Q Consensus 1202 ~~~ 1204 (1209)
+..
T Consensus 230 ~~~ 232 (252)
T COG1124 230 LSH 232 (252)
T ss_pred hcC
Confidence 543
No 28
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.82 E-value=3e-20 Score=184.34 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=126.0
Q ss_pred HHHHHHHHhhhcccc--cCC-cchhhhhhccCCc---cccchhHHHHHHHHcCCcc----ccccCCCChhhhhhhhHHHH
Q 000957 1048 MEEINKIIRELWQQT--YRG-QDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE----LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~lSgG~k~l~sl~ir 1117 (1209)
..++++.++|+.|.. ||. |..++|.+..... ......+++.++..+|..+ .++|..|||||+| |
T Consensus 70 ~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQ------R 143 (309)
T COG1125 70 PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQ------R 143 (309)
T ss_pred HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhh------H
Confidence 457889999999987 654 6778887765443 2334456788888888754 4678999999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
+.+||||+.+|++|+||||+++|||.++..+-+.+..+ ...-|.|||+||||++.+-.++|++.++..|+|.-.++
T Consensus 144 VGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l----q~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 144 VGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL----QKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred HHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH----HHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCC
Confidence 99999999999999999999999999999999999998 34468899999999999999999999999999999998
Q ss_pred cccccccc
Q 000957 1198 QHSIIEAQ 1205 (1209)
Q Consensus 1198 ~~s~~~~~ 1205 (1209)
|..++.+|
T Consensus 220 P~~il~~P 227 (309)
T COG1125 220 PDEILANP 227 (309)
T ss_pred HHHHHhCc
Confidence 88877654
No 29
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.81 E-value=7.6e-20 Score=173.39 Aligned_cols=139 Identities=20% Similarity=0.234 Sum_probs=117.7
Q ss_pred HHHHHHHHhhhcccc---cCCcchhhhhhccCCccc---cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1048 MEEINKIIRELWQQT---YRGQDIDYIRIHSDSEGA---GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
..-+++.++.+||.+ ...+.++++.+.-...+. ..+..+..++..+|+.+ ...|.+|||||+| |++
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQ------Rva 147 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQ------RVA 147 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHH------HHH
Confidence 456889999999997 467888988876554432 23344555666777765 4567899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
||||+++.|++|+.||||.||||.+...+++++.++ ...|+||||.|||..++..+..++++...|+++++..
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei-----nr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI-----NRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH-----hhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999999 5579999999999999999999999999999998863
No 30
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=5.6e-20 Score=182.02 Aligned_cols=145 Identities=22% Similarity=0.243 Sum_probs=114.9
Q ss_pred HHHHHHHhhhcccc--c-CCcchhhhhhccCCcc----ccchhHHHHHHHHcCCc---cccccCCCChhhhhhhhHHHHH
Q 000957 1049 EEINKIIRELWQQT--Y-RGQDIDYIRIHSDSEG----AGTRSYSYKVLMQTGDA---ELEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
..+++.++.+||.- | .-+.++++.+.-..+. ...+..+..-+..+|+. ...||+.|||||+. |+
T Consensus 81 ~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~K------Rv 154 (263)
T COG1127 81 YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRK------RV 154 (263)
T ss_pred HHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHH------HH
Confidence 56788899999975 3 3467777766433221 11112222223344543 35789999999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
|||||++.+|+++++||||+||||.....|..+|+++ +.+-|.|+|+||||+..+..+||++++...++|...|++
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L----~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIREL----NDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH----HHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999999999998 345689999999999999999999999999999999987
Q ss_pred ccccc
Q 000957 1199 HSIIE 1203 (1209)
Q Consensus 1199 ~s~~~ 1203 (1209)
..+..
T Consensus 231 ~el~~ 235 (263)
T COG1127 231 EELLA 235 (263)
T ss_pred HHHHh
Confidence 76654
No 31
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.80 E-value=6.1e-20 Score=190.14 Aligned_cols=154 Identities=16% Similarity=0.218 Sum_probs=123.4
Q ss_pred hhhcHHHHHHHHhhhccccc---CCcchhhhhhccCCc----c-cc--chhHHHHHHHHcCCccc--cccCCCChhhhhh
Q 000957 1044 HTMKMEEINKIIRELWQQTY---RGQDIDYIRIHSDSE----G-AG--TRSYSYKVLMQTGDAEL--EMRGRCSAGQKVL 1111 (1209)
Q Consensus 1044 ~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~-~~--~~~~~~~~~~~~~~~~~--~~~~~lSgG~k~l 1111 (1209)
+.....++.+.+++++|... +-++.+.+.+...++ + .+ ....+...+..++..+. +....|||||||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQ- 145 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQ- 145 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHH-
Confidence 34556788999999999863 345666666544332 1 11 11234445666676664 344789999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
|+.||+||+++|++|+|||||++||..|.-.+.++|+++. ...|.|+|+|+||++++.++||++++++.|+
T Consensus 146 -----rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~----~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~ 216 (258)
T COG1120 146 -----RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN----REKGLTVVMVLHDLNLAARYADHLILLKDGK 216 (258)
T ss_pred -----HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 9999999999999999999999999999999999999993 4568999999999999999999999999999
Q ss_pred EeecCCcccccccccc
Q 000957 1192 VAKDDHQHSIIEAQEI 1207 (1209)
Q Consensus 1192 v~~~~~~~s~~~~~~~ 1207 (1209)
|...|++.+++....+
T Consensus 217 i~a~G~p~evlT~e~l 232 (258)
T COG1120 217 IVAQGTPEEVLTEENL 232 (258)
T ss_pred EEeecCcchhcCHHHH
Confidence 9999999998876544
No 32
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=6.4e-20 Score=171.01 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=120.0
Q ss_pred hhcHHHHHHHHhhhccccc---CCcchhhhhh-c---cCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHH
Q 000957 1045 TMKMEEINKIIRELWQQTY---RGQDIDYIRI-H---SDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1045 ~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ 1115 (1209)
......++..++++||.+- ..+..+++.- . -+.........+..++..+|..+ ..+|..|||||+|
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQ----- 159 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQ----- 159 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHH-----
Confidence 3345677788888888762 2234443311 0 11111223345667778888766 4678999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
|+||||||+..|.++++||||++|||+-+-.+...+.++ ...|.|+++|||.|.|+..++..+++.|.|.|...
T Consensus 160 -R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L-----AeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 160 -RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL-----AEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred -HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH-----HHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 999999999999999999999999999999999999998 56799999999999999999999999999999999
Q ss_pred CCccccccccc
Q 000957 1196 DHQHSIIEAQE 1206 (1209)
Q Consensus 1196 ~~~~s~~~~~~ 1206 (1209)
|+|..++..+.
T Consensus 234 G~P~qvf~nP~ 244 (256)
T COG4598 234 GPPEQVFGNPQ 244 (256)
T ss_pred CChHHHhcCCC
Confidence 99998886653
No 33
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.80 E-value=1.1e-09 Score=138.59 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=10.7
Q ss_pred hCCCCccccCCCCch
Q 000957 584 AHHVCPCCERPFSAE 598 (1209)
Q Consensus 584 ~~~~c~~C~r~~~~~ 598 (1209)
..+.|..|.+.|+..
T Consensus 1086 ~~~~l~e~~~~w~E~ 1100 (1822)
T KOG4674|consen 1086 RHALLSEQERDWSEK 1100 (1822)
T ss_pred HHhHHhhcccchHHH
Confidence 455788888998543
No 34
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.79 E-value=7.7e-20 Score=191.63 Aligned_cols=113 Identities=24% Similarity=0.295 Sum_probs=100.9
Q ss_pred hhHHHHHHHHcCCcc-----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHH
Q 000957 1083 RSYSYKVLMQTGDAE-----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIME 1157 (1209)
Q Consensus 1083 ~~~~~~~~~~~~~~~-----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~ 1157 (1209)
...+..++..+|..+ ..+|.+|||||+| |+.||.|++.+|++||.||||++||..+...+.++|+++.
T Consensus 128 ~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ------RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~- 200 (316)
T COG0444 128 KERAIELLELVGIPDPERRLKSYPHELSGGMRQ------RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQ- 200 (316)
T ss_pred HHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH------HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHH-
Confidence 345667777777654 4678999999999 9999999999999999999999999999999999999993
Q ss_pred hhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccccc
Q 000957 1158 DRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1158 ~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~ 1205 (1209)
...|.++|+||||+.++..+||++.+++.|+|+..|+...++..+
T Consensus 201 ---~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P 245 (316)
T COG0444 201 ---REKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNP 245 (316)
T ss_pred ---HhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCC
Confidence 346899999999999999999999999999999999888887654
No 35
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=2.7e-19 Score=181.40 Aligned_cols=130 Identities=24% Similarity=0.276 Sum_probs=101.1
Q ss_pred HHHHhhhccccc---CCcchhhhhhccCCcc--c-cchhHHHHHHHHcCCccc---cccCCCChhhhhhhhHHHHHHHHH
Q 000957 1052 NKIIRELWQQTY---RGQDIDYIRIHSDSEG--A-GTRSYSYKVLMQTGDAEL---EMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1052 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~---~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
++.++.+||.+. .-+..+++.+.....+ . ........+...+|..+. .+|..|||||+| |+||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQ------RVAIAR 155 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ------RVAIAR 155 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHH------HHHHHH
Confidence 456899999873 4577888876322221 1 123345556677777642 568999999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
||+.+|++++.||||++||+.+...+..+|.++. ...|.||||||||+.++. +||+++....|++
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~----~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELN----KERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 9999999999999999999999999999999983 445899999999999987 6666666666553
No 36
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3e-19 Score=176.38 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=117.9
Q ss_pred HHhhhcHHHHHHHHhhhccccc---CCcchhhhhhccC-----------CccccchhHHHHHHHHcCCcc--ccccCCCC
Q 000957 1042 RFHTMKMEEINKIIRELWQQTY---RGQDIDYIRIHSD-----------SEGAGTRSYSYKVLMQTGDAE--LEMRGRCS 1105 (1209)
Q Consensus 1042 ~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~lS 1105 (1209)
...+......++.++++||.+- .-+.+.++....- .+....+..+...+.++|..+ ....+.||
T Consensus 70 ~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LS 149 (258)
T COG3638 70 KLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLS 149 (258)
T ss_pred ccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCC
Confidence 3344445677888889998762 2334444443211 112223345566777788766 34558999
Q ss_pred hhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhh
Q 000957 1106 AGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQH 1185 (1209)
Q Consensus 1106 gG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~ 1185 (1209)
|||+| |++|||+|+++|.+++.|||+++|||.+...+++.|+++ +...|.|+|+..|+.+++..+|++++
T Consensus 150 GGQQQ------RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i----n~~~g~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 150 GGQQQ------RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI----NQEDGITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred cchhH------HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH----HHHcCCEEEEEechHHHHHHHHhhhe
Confidence 99999 999999999999999999999999999999999999999 45679999999999999999999999
Q ss_pred hhcCcEEeecCCccc
Q 000957 1186 AEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1186 ~~~~~~v~~~~~~~s 1200 (1209)
.+..|+|+++|++..
T Consensus 220 gl~~G~ivfDg~~~e 234 (258)
T COG3638 220 GLKAGRIVFDGPASE 234 (258)
T ss_pred EecCCcEEEeCChhh
Confidence 999999999997754
No 37
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.79 E-value=2.5e-10 Score=149.62 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=62.0
Q ss_pred hcCCHHhhhhheeeccCCCCCCCC-CchhhHHhhHHhhhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 38 MGVSKAILENVIFVHQDEANWPLQ-DPSTLKKKFDDIFSATRYTK-------ALEVIKKLHKDQAQEIKTYKLKLENLQT 109 (1209)
Q Consensus 38 lgvs~ail~~VifchQees~wpl~-ep~~Lkk~fDdIf~a~ky~k-------ale~lk~~rke~~~~lK~~~~~l~~lk~ 109 (1209)
+|+.+.-. -|+.|++-.|.++ .|..+..+|+++.|+.+|.+ -|+....-......-+..+...++.|+.
T Consensus 131 ~gi~~~~~---~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~ 207 (1163)
T COG1196 131 SGIGKESY---SIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLER 207 (1163)
T ss_pred cCCCCCCC---ceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46665544 6778999999999 79999999999999999998 3333444444555566777888888888
Q ss_pred HHHHHHHHHHHH
Q 000957 110 LKDAAYKLRESI 121 (1209)
Q Consensus 110 ~ke~a~~~~~~i 121 (1209)
.++.|..|+..-
T Consensus 208 q~~~a~~y~~l~ 219 (1163)
T COG1196 208 QAEKAERYQELK 219 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 888888877543
No 38
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.6e-19 Score=187.98 Aligned_cols=148 Identities=22% Similarity=0.252 Sum_probs=121.9
Q ss_pred HHHHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHH
Q 000957 1048 MEEINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
...+.+.++.+||.+ |..+..+.+.+.....+ .....++..++..++..+ ...+..||||||| |+
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkq------Rv 147 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQ------RV 147 (235)
T ss_pred HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCccee------eH
Confidence 467888899999987 45666766665433222 123345666777777655 4566899999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
|||.+|+.+|.+|+|||||++|||.++..+...|.++. ...|.|+|+||||++++..+||+++++..|++..+|++
T Consensus 148 aIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~----~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK----EEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred HhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH----hcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCH
Confidence 99999999999999999999999999999999999982 34478999999999999999999999999999999988
Q ss_pred ccccccc
Q 000957 1199 HSIIEAQ 1205 (1209)
Q Consensus 1199 ~s~~~~~ 1205 (1209)
.+++...
T Consensus 224 ~~i~~~~ 230 (235)
T COG1122 224 AEIFNDA 230 (235)
T ss_pred HHHhhhh
Confidence 8887654
No 39
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.77 E-value=3e-10 Score=153.39 Aligned_cols=218 Identities=19% Similarity=0.278 Sum_probs=104.8
Q ss_pred chhhhhhhhhcCCHHhhhhheeeccCCC-CCCCCCchhhHHhhHHhhhhhhhHHHHHH-------HHHHHHHHHHHHHHH
Q 000957 29 DMDREVPALMGVSKAILENVIFVHQDEA-NWPLQDPSTLKKKFDDIFSATRYTKALEV-------IKKLHKDQAQEIKTY 100 (1209)
Q Consensus 29 ~~d~~~~~~lgvs~ail~~VifchQees-~wpl~ep~~Lkk~fDdIf~a~ky~kale~-------lk~~rke~~~~lK~~ 100 (1209)
++-..+|. +|+++..+. |..|++. .|+...|+.+.+.||+|+|+..|...++. +.....+....+..+
T Consensus 121 ~~~~~l~~-~~~~~~~~~---~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L 196 (1164)
T TIGR02169 121 EIHDFLAA-AGIYPEGYN---VVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEK 196 (1164)
T ss_pred HHHHHHHH-cCCCcCcce---EEecchHHHHHCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 588777552 3457665 57777999999999999999999774444 444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 101 KLKLENLQTLKDAAYKLRESISQ-DQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQ 179 (1209)
Q Consensus 101 ~~~l~~lk~~ke~a~~~~~~i~~-~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1209)
+..++.++..++.+..++..... ....+..+...+..+..++..+...+..+... +..+..++..+...+..+...
T Consensus 197 ~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~l~~~l~~~~~~~~~~~~~ 273 (1164)
T TIGR02169 197 RQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE---LEKLTEEISELEKRLEEIEQL 273 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444432111 11122222333333333333333333322222 222222333333444444444
Q ss_pred HHHHHHHhhhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000957 180 QQKQYAALAEEIE-DTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAH 254 (1209)
Q Consensus 180 ~~~l~~~~~~~l~-~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~ 254 (1209)
+..+...+. .+. .....+...+..+...+..++..+..+..++..+...+..+..++..+..++..+..+...+
T Consensus 274 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 348 (1164)
T TIGR02169 274 LEELNKKIK-DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348 (1164)
T ss_pred HHHHHHHHH-hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 222 22333444444444444444444444444444444444444444444444444444433333
No 40
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=9.1e-19 Score=180.21 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=114.7
Q ss_pred HHHhhhcccc-----cCCcchhhhhhccCCc-------cccchhHHHHHHHHcCCccc--cccCCCChhhhhhhhHHHHH
Q 000957 1053 KIIRELWQQT-----YRGQDIDYIRIHSDSE-------GAGTRSYSYKVLMQTGDAEL--EMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1053 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
..++|++|.. ||-++.+.+....... ....+..+...+..+|..+. ..++.|||||+| |+
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~Q------RV 148 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQ------RV 148 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHH------HH
Confidence 4688999865 6778888776642211 11223456677888887764 455999999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
.|||||+++|++|+|||||+|+|+.+...|.++|.++ ...|.+|++||||+..+...||++++.+. ++...|++
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l-----~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~ 222 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL-----RQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPP 222 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccCh
Confidence 9999999999999999999999999999999999998 34499999999999999999999999865 67777878
Q ss_pred cccccccc
Q 000957 1199 HSIIEAQE 1206 (1209)
Q Consensus 1199 ~s~~~~~~ 1206 (1209)
..++....
T Consensus 223 ~~~~~~~~ 230 (254)
T COG1121 223 EEVLTEEN 230 (254)
T ss_pred hhccCHHH
Confidence 77776543
No 41
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=1.2e-18 Score=178.34 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=117.8
Q ss_pred HHHhhhcccc--c-CCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--Y-RGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ + ..+..++..+.-...+ ......+..++..+|+.. ..+|.+|||||+| |+.|||||
T Consensus 106 ~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQ------RVGLARAl 179 (386)
T COG4175 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQ------RVGLARAL 179 (386)
T ss_pred hhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHH------HHHHHHHH
Confidence 3456788887 3 3456777666443332 334456667788887654 5788999999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|++|||+++|||--+..+-+.|.++- ..-+.|||+||||++.+-++++++..+.-|+|+..|+|.+++..
T Consensus 180 a~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq----~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 180 ANDPDILLMDEAFSALDPLIRTEMQDELLELQ----AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred ccCCCEEEecCchhhcChHHHHHHHHHHHHHH----HHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcC
Confidence 99999999999999999999999999998883 33467999999999999999999999999999999999998876
Q ss_pred c
Q 000957 1205 Q 1205 (1209)
Q Consensus 1205 ~ 1205 (1209)
|
T Consensus 256 P 256 (386)
T COG4175 256 P 256 (386)
T ss_pred c
Confidence 5
No 42
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.76 E-value=1.2e-14 Score=178.48 Aligned_cols=246 Identities=16% Similarity=0.239 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC---cccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhh
Q 000957 931 YRETKAKVDKFASEIESLEERVLKIGG---VSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKD 1007 (1209)
Q Consensus 931 ~~~~~~~l~~l~~ei~~l~~~~~~~~~---~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~ 1007 (1209)
+..+..++..+..++..+..++..... +..+..+...+..++..+..++..+.+++..+..++..+.+++. .+..
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~ 470 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD--EKTK 470 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 444555777888888888888876542 34566667777777777777777777777777777777766665 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcHHHHHHHHhhhcccccCCc-chhhhhhccCCccccchhHH
Q 000957 1008 IDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQ-DIDYIRIHSDSEGAGTRSYS 1086 (1209)
Q Consensus 1008 ~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 1086 (1209)
...+...... .+....+....|+.............+...+..+|..++.+. .+..+.+..+.
T Consensus 471 ~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~~~~~~v~id~~~--------- 534 (650)
T TIGR03185 471 QKINAFELER-------AITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRKHNLISRLKIDPET--------- 534 (650)
T ss_pred HHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeEEEEcCCc---------
Confidence 3333332222 222233333333333333333444556666666666654332 12222221111
Q ss_pred HHHHHHcCCccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHH-HHHHHHHhhccCCCc
Q 000957 1087 YKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAA-ALHRIMEDRKGQENF 1165 (1209)
Q Consensus 1087 ~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~~~~~~~~~~~~ 1165 (1209)
|.+...........+..|||||+++.+|++++||+++...+.|+ |+|+|+++||+.++..++. ++..+ +.
T Consensus 535 ~~~~l~~~~g~~~~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~--------~~ 605 (650)
T TIGR03185 535 FAVSLYDNNGKHIDKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA--------SH 605 (650)
T ss_pred eeEEEEcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc--------CC
Confidence 11111111111223468999999999999999999987666777 5699999999999999875 44432 46
Q ss_pred EEEEEecCHHHHHHhhhHh--hhhcCcEEeecCCc-ccccc
Q 000957 1166 QLIVITHDERFAQLIGQRQ--HAEKYYRVAKDDHQ-HSIIE 1203 (1209)
Q Consensus 1166 ~~i~itH~~~~~~~~~~~~--~~~~~~~v~~~~~~-~s~~~ 1203 (1209)
||||+|||.++-..+-... .+-+.|.+..++.. .|.|.
T Consensus 606 QvIils~d~e~~~~~~~~l~~~i~~~y~l~y~~~~~~t~i~ 646 (650)
T TIGR03185 606 QVLLLSTDEEVDEKHYNLLKPNISHEYLLEFDDEARTSVVT 646 (650)
T ss_pred eEEEEechHhhCHHHHHHHHHHhhhheEEEecCCcCceeec
Confidence 9999999998877554332 56667788887544 43544
No 43
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.75 E-value=7.8e-19 Score=198.58 Aligned_cols=143 Identities=22% Similarity=0.284 Sum_probs=114.0
Q ss_pred HHHhhhcccccCC---------cchhhhhhccCCccccchhHHHHHHHHcCCcc--c--cccCCCChhhhhhhhHHHHHH
Q 000957 1053 KIIRELWQQTYRG---------QDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--L--EMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1053 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
+.++++||.++.. ...+.+.++........+..+..++..+|..+ . .+|++|||||+| |+.
T Consensus 91 ~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ------Rv~ 164 (539)
T COG1123 91 KRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ------RVM 164 (539)
T ss_pred ccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH------HHH
Confidence 4567888887411 12222333332222333445666777777654 3 378999999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||+|++.+|.+||+|||||+||+.....+.++|+++. ...|.++|+||||+.+++.+||++.+++.|.|+..|+..
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~----~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ----RELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTE 240 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHH----HHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999994 457899999999999999999999999999999999888
Q ss_pred cccccc
Q 000957 1200 SIIEAQ 1205 (1209)
Q Consensus 1200 s~~~~~ 1205 (1209)
.++.++
T Consensus 241 ~i~~~p 246 (539)
T COG1123 241 EILSNP 246 (539)
T ss_pred HHHhcc
Confidence 887654
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.75 E-value=2.9e-15 Score=183.92 Aligned_cols=83 Identities=25% Similarity=0.411 Sum_probs=65.5
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhc----------cCCCeEEEeCCC-CCCCHHhHHHHHHHHHHHHHhhccCCCcEEE
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFC----------LNCGILALDEPT-TNLDGPNAESLAAALHRIMEDRKGQENFQLI 1168 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~----------~~~~~l~lDEp~-~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i 1168 (1209)
.++.|||||++ |++||++|+ .+|++||||||| ++||+.+...|...|..+ .|.+||
T Consensus 465 ~~~~lS~Ge~~------r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-------~~~~ii 531 (562)
T PHA02562 465 SYASFSQGEKA------RIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-------KDTNVF 531 (562)
T ss_pred ChhhcChhHHH------HHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-------CCCeEE
Confidence 45689999999 666665554 589999999998 789999999999988865 367999
Q ss_pred EEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1169 VITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1169 ~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
||||++.+.. .+++.+.+...| +.|.+
T Consensus 532 iish~~~~~~------~~d~~~~l~~~~-~~~~~ 558 (562)
T PHA02562 532 VISHKDHDPQ------KFDRHLKMEKVG-RFSVM 558 (562)
T ss_pred EEECchhchh------hhhcEEEEEEEC-CeeEE
Confidence 9999988775 567777777665 44443
No 45
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.75 E-value=1.6e-18 Score=196.04 Aligned_cols=148 Identities=21% Similarity=0.279 Sum_probs=117.1
Q ss_pred HHHHHHHHhhhcccccC-----CcchhhhhhccCCc----cccchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHH
Q 000957 1048 MEEINKIIRELWQQTYR-----GQDIDYIRIHSDSE----GAGTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ 1115 (1209)
+....+.+.++||.+|. .+..+.+.-....+ ....+..+..++..++... ..+|+.|||||||
T Consensus 362 ~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ----- 436 (539)
T COG1123 362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ----- 436 (539)
T ss_pred hhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH-----
Confidence 34566778889999873 23344333222111 1222334556677777654 4678999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
|+||||||+.+|.+||+||||++||+.....+.++|.++- ...|.++|+||||+.++..+||++.+++.|+|+..
T Consensus 437 -RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq----~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 437 -RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ----EELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred -HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHH----HHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999993 44689999999999999999999999999999999
Q ss_pred CCcccccccc
Q 000957 1196 DHQHSIIEAQ 1205 (1209)
Q Consensus 1196 ~~~~s~~~~~ 1205 (1209)
|+...++..+
T Consensus 512 G~~~~v~~~p 521 (539)
T COG1123 512 GPTEKVFENP 521 (539)
T ss_pred CCHHHHhcCC
Confidence 9777666554
No 46
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.8e-18 Score=172.58 Aligned_cols=127 Identities=24% Similarity=0.261 Sum_probs=104.4
Q ss_pred HHHhhhcccc--c-CCcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--Y-RGQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
..++++||.. | +-|..+|+.+.-... .......+...+..+|... ..+|.+||||||| |+||||||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQ------RVaiARAL 145 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQ------RVAIARAL 145 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHH------HHHHHHHH
Confidence 4567888887 3 467888887754432 2223345677888887654 6788999999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcC
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKY 1189 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~ 1189 (1209)
+.+|++|+||||+++||..++..+.+.|.+++. ..++|+|+||||.+.+-.++|+++++..
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~----~~~~TvllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWE----ETRKTVLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH----hhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence 999999999999999999999999999999964 3568999999999999999998877765
No 47
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.8e-18 Score=174.12 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=120.0
Q ss_pred HHHHhhhcccc--c-CCcchhhhhhccCCc-----cccchhHHHHHHHHcCCc--cccccCCCChhhhhhhhHHHHHHHH
Q 000957 1052 NKIIRELWQQT--Y-RGQDIDYIRIHSDSE-----GAGTRSYSYKVLMQTGDA--ELEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+.++.+||.+ | ..|.+++|.+..... ....+..+..++..++.. ...+|.+|||||+| |+|||
T Consensus 76 ~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQ------RVALA 149 (345)
T COG1118 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQ------RVALA 149 (345)
T ss_pred hcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHH------HHHHH
Confidence 46688899987 4 467899988754322 233445666666666544 45788999999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
||++..|++|+||||+++||..-+..|...|+++.. ..|++.++||||.+++..+||++..+..|+|...|++..+
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~----~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD----RLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH----hhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999843 3589999999999999999999999999999999998888
Q ss_pred ccccc
Q 000957 1202 IEAQE 1206 (1209)
Q Consensus 1202 ~~~~~ 1206 (1209)
...+.
T Consensus 226 ~~~P~ 230 (345)
T COG1118 226 YDHPA 230 (345)
T ss_pred hcCCC
Confidence 66543
No 48
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.73 E-value=6.2e-18 Score=188.42 Aligned_cols=144 Identities=18% Similarity=0.222 Sum_probs=115.3
Q ss_pred HHHHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1050 EINKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+++.++++||.+ |+ .+..+++.+.....+ ......+..++..+|..+ ..+++.||||||| |++||
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQ------RV~IA 152 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQ------RVAIA 152 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH------HHHHH
Confidence 3456788999885 43 577888766332111 112234556677777654 3566899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
|||+.+|++|+|||||++||+.+...+..+|+++. ...|.|||+|||+++++..+||+++++..|+|...|+...+
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~----~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEIN----RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999983 23478999999999999999999999999999998877666
Q ss_pred cc
Q 000957 1202 IE 1203 (1209)
Q Consensus 1202 ~~ 1203 (1209)
+.
T Consensus 229 ~~ 230 (343)
T TIGR02314 229 FS 230 (343)
T ss_pred Hc
Confidence 54
No 49
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.73 E-value=4.3e-18 Score=179.48 Aligned_cols=155 Identities=17% Similarity=0.296 Sum_probs=122.1
Q ss_pred HHhhhcHHHHHHHHhhhcccccCCc-----chhh----hhhccCC-ccccchhHHHHHHHHcCCcc---ccccCCCChhh
Q 000957 1042 RFHTMKMEEINKIIRELWQQTYRGQ-----DIDY----IRIHSDS-EGAGTRSYSYKVLMQTGDAE---LEMRGRCSAGQ 1108 (1209)
Q Consensus 1042 ~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~ 1108 (1209)
.+....|.-+++.+..+||.+|..- ..+. +.++... ........+...+.-+|... ..+|+.+||||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 3444556778889999999998421 1111 1122111 11223344555666677543 57889999999
Q ss_pred hhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc
Q 000957 1109 KVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK 1188 (1209)
Q Consensus 1109 k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~ 1188 (1209)
+| |+|||||+..+|.+++|||||++||..-...+.++|+.+ ....|.+.+|||||+..+..+|+++++++
T Consensus 432 RQ------RIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L----Q~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 432 RQ------RIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL----QQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred hh------HHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH----HHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 99 999999999999999999999999999999999999998 34468899999999999999999999999
Q ss_pred CcEEeecCCccccccccc
Q 000957 1189 YYRVAKDDHQHSIIEAQE 1206 (1209)
Q Consensus 1189 ~~~v~~~~~~~s~~~~~~ 1206 (1209)
.|+|+..|+..+++..+.
T Consensus 502 ~GkiVE~G~~~~if~~P~ 519 (534)
T COG4172 502 DGKIVEQGPTEAVFANPQ 519 (534)
T ss_pred CCEEeeeCCHHHHhcCCC
Confidence 999999999888887653
No 50
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.73 E-value=4.7e-18 Score=179.22 Aligned_cols=142 Identities=21% Similarity=0.283 Sum_probs=118.9
Q ss_pred HHhhhccccc---------CCcchhhhhhccCCccccchhHHHHHHHHcCCcc-----ccccCCCChhhhhhhhHHHHHH
Q 000957 1054 IIRELWQQTY---------RGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE-----LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1054 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.|+++||.++ ..+..+.+.++.+......+.++..++..+|..+ ..+|++|||||+| |+.
T Consensus 94 ~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ------RVM 167 (534)
T COG4172 94 KIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ------RVM 167 (534)
T ss_pred ceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh------HHH
Confidence 4678888874 2234556666666555555567777888888765 3578999999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||+||++.|++||.|||||+||......+.++|+++ ....|..+++||||+..+..++|+++++..|.|+..|...
T Consensus 168 IAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L----q~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~ 243 (534)
T COG4172 168 IAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL----QAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE 243 (534)
T ss_pred HHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH----HHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence 999999999999999999999999999999999998 3456899999999999999999999999999999999877
Q ss_pred cccccc
Q 000957 1200 SIIEAQ 1205 (1209)
Q Consensus 1200 s~~~~~ 1205 (1209)
.+|..+
T Consensus 244 ~lF~~P 249 (534)
T COG4172 244 TLFAAP 249 (534)
T ss_pred HHhhCC
Confidence 776544
No 51
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.72 E-value=7.4e-18 Score=161.34 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=115.5
Q ss_pred HHHHHHHHhhhcccc---cCCcchhhhhhccCCccc---cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1048 MEEINKIIRELWQQT---YRGQDIDYIRIHSDSEGA---GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
...+++.++-+|... +.-|..++|.+++..++- ....+...+...++..+ ....+.+|-|+|| |++
T Consensus 70 p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kq------kV~ 143 (245)
T COG4555 70 PSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQ------KVA 143 (245)
T ss_pred hHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHH------HHH
Confidence 345667777776433 245677777776665532 22345566666776555 3344889999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||||++++|.+|+|||||+|||..+...|.+.|..+ ...|..+|+.||+++.++.+||++++.|.|.|+..|++.
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~-----k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~ 218 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL-----KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE 218 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHh-----hcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHH
Confidence 999999999999999999999999999999988877 568999999999999999999999999999999999876
Q ss_pred ccc
Q 000957 1200 SII 1202 (1209)
Q Consensus 1200 s~~ 1202 (1209)
++-
T Consensus 219 ~l~ 221 (245)
T COG4555 219 ALD 221 (245)
T ss_pred HHH
Confidence 653
No 52
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.72 E-value=1.4e-17 Score=182.40 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=121.6
Q ss_pred HHHHHHHHhhhcccc--c-CCcchhhhhhccCCcccc---chhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1048 MEEINKIIRELWQQT--Y-RGQDIDYIRIHSDSEGAG---TRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
...+.+.++++++.+ | .-|..+++.+.+..++.. ...++..++..++..+ ...++.||||||+ |++
T Consensus 73 ~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kq------rl~ 146 (293)
T COG1131 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQ------RLS 146 (293)
T ss_pred HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHH------HHH
Confidence 356778899999987 3 346788888877766432 3456778899998876 4556899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||.||+++|++|||||||+||||..+..|.++|+.+. ...|.+||++||.++.+..+||++.+.+.|++...|++.
T Consensus 147 ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~----~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 147 IALALLHDPELLILDEPTSGLDPESRREIWELLRELA----KEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred HHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH----hCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999999999983 223489999999999999999999999999999999655
Q ss_pred cc
Q 000957 1200 SI 1201 (1209)
Q Consensus 1200 s~ 1201 (1209)
..
T Consensus 223 ~l 224 (293)
T COG1131 223 EL 224 (293)
T ss_pred HH
Confidence 43
No 53
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=2.3e-17 Score=182.35 Aligned_cols=145 Identities=21% Similarity=0.231 Sum_probs=115.0
Q ss_pred HHHHHHHhhhcccc----cCCcchhhhhhccCCc---cccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHH
Q 000957 1049 EEINKIIRELWQQT----YRGQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
..+++.++++||.+ |..+..+++.+..... .......+..++..+|.. . ...+..|||||+| |+
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkq------rv 174 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKR------RV 174 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH------HH
Confidence 44567788999853 4567777776532111 111223456667777764 2 3566899999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|||||||++||+.++..|.+.|..+ ...|.|||+||||++++..+||++++++.|+|...|++
T Consensus 175 alA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l-----~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~ 249 (305)
T PRK13651 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-----NKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDT 249 (305)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999988 23588999999999999999999999999999999877
Q ss_pred cccccc
Q 000957 1199 HSIIEA 1204 (1209)
Q Consensus 1199 ~s~~~~ 1204 (1209)
..++..
T Consensus 250 ~~~~~~ 255 (305)
T PRK13651 250 YDILSD 255 (305)
T ss_pred HHHhcC
Confidence 665543
No 54
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=4.5e-17 Score=151.20 Aligned_cols=130 Identities=24% Similarity=0.325 Sum_probs=100.1
Q ss_pred HHHhhhccccc---CCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQTY---RGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
++++-+||.|. .-+..+++.+.....+ ...+.....++..+|... .-+|++|||||+| |+||||||
T Consensus 88 ~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQ------RVAiARAf 161 (228)
T COG4181 88 RHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQ------RVALARAF 161 (228)
T ss_pred cceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHH------HHHHHHHh
Confidence 34677888873 3345566655443332 122334566778887655 4678999999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
+..|.+||.||||.|||..+-..++++|-.+. ...|.|+|+||||+.++. -|++.+.+..|++.
T Consensus 162 a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln----re~G~TlVlVTHD~~LA~-Rc~R~~r~~~G~l~ 225 (228)
T COG4181 162 AGRPDVLFADEPTGNLDRATGDKIADLLFALN----RERGTTLVLVTHDPQLAA-RCDRQLRLRSGRLV 225 (228)
T ss_pred cCCCCEEeccCCCCCcchhHHHHHHHHHHHHh----hhcCceEEEEeCCHHHHH-hhhheeeeecceec
Confidence 99999999999999999999999999999883 557899999999999987 46666666666654
No 55
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.69 E-value=3.8e-17 Score=181.20 Aligned_cols=142 Identities=20% Similarity=0.153 Sum_probs=113.5
Q ss_pred HHHHHHhhhcccc--cC-CcchhhhhhccCCcccc---chhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1050 EINKIIRELWQQT--YR-GQDIDYIRIHSDSEGAG---TRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+.+.++++|+.. |+ .+..+++.+....++.. .......++..++... ...++.|||||+| |++||
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~la 150 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKR------RLTLA 150 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHH------HHHHH
Confidence 3566788888875 43 47788877644333211 1223445666776544 3456899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
+||+++|++|||||||+||||.++..|.++|.++ ...|.|||++||++.++..+||++++++.|+|...|++..+
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l-----~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL-----LARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-----HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999988 34588999999999999999999999999999999876655
Q ss_pred c
Q 000957 1202 I 1202 (1209)
Q Consensus 1202 ~ 1202 (1209)
.
T Consensus 226 ~ 226 (306)
T PRK13537 226 I 226 (306)
T ss_pred H
Confidence 4
No 56
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.69 E-value=6.3e-17 Score=152.14 Aligned_cols=112 Identities=26% Similarity=0.320 Sum_probs=97.0
Q ss_pred chhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhh
Q 000957 1082 TRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDR 1159 (1209)
Q Consensus 1082 ~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~ 1159 (1209)
.+..+..+...+|... .+-|+.||||||| |+||||+|..+-||++||||+++|||.-+.....++..+.
T Consensus 106 ~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQ------RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~--- 176 (231)
T COG3840 106 QREKVEAAAAQVGLAGFLKRLPGELSGGQRQ------RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC--- 176 (231)
T ss_pred HHHHHHHHHHHhChhhHhhhCccccCchHHH------HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH---
Confidence 3445666777777554 5667999999999 9999999999999999999999999999999999999985
Q ss_pred ccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1160 KGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1160 ~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
...+.|+++|||.++.+.++++++.+...|+|...|+....+.
T Consensus 177 -~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 177 -DERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred -HhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 4567899999999999999999999999999999886655543
No 57
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=9.2e-17 Score=147.13 Aligned_cols=140 Identities=15% Similarity=0.200 Sum_probs=110.5
Q ss_pred HHHHHHHhhhcccc--cC-Ccchhhhh-hcc---CCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1049 EEINKIIRELWQQT--YR-GQDIDYIR-IHS---DSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~-~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
..+++.++++||.+ +| -+..+++- -.. +......+..+..++.+..... ..+|-.|||||.| |+|
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqq------rva 151 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQ------RVA 151 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhh------hHH
Confidence 67888899999986 22 23444431 111 1111223445667777766554 4566789999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
|||||+..|.+|++||||++|||+-...+...|+++ ...|.|-+||||..+++..++.++.-+..|+|+..|+..
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel-----~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL-----AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH-----HhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999999999999999999988 567899999999999999999999999999999998443
No 58
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.69 E-value=2.1e-17 Score=179.53 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=120.7
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCcc----ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSEG----AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
.+.++++||.+ || -++.++|.+.-.... ......+..++..++... ..++.+|||||+| |+||||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQ------RVALAR 149 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQ------RVALAR 149 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHH------HHHHHH
Confidence 46789999997 65 478888887554221 122345666777777655 5677999999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
||...|++|+||||.++||..-+..+...|+.+. ..-|.|+|+||||...+..++|++.+++.|+|...|++..+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq----~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ----RELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHH----HhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHh
Confidence 9999999999999999999999999999999984 345899999999999999999999999999999999988877
Q ss_pred ccc
Q 000957 1203 EAQ 1205 (1209)
Q Consensus 1203 ~~~ 1205 (1209)
..+
T Consensus 226 ~~P 228 (352)
T COG3842 226 ERP 228 (352)
T ss_pred hCc
Confidence 654
No 59
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.68 E-value=4.9e-17 Score=180.87 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=109.7
Q ss_pred HHHHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+.+.++++|+.. |++ +..+++.+.....+ .........++..++... ...++.|||||+| |++||+
T Consensus 64 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~la~ 137 (302)
T TIGR01188 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRR------RLDIAA 137 (302)
T ss_pred HHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHH------HHHHHH
Confidence 345677888775 333 66777765432221 111223455677777654 3456899999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
||+++|++|||||||+||||.++..|.++|..+ ...|.+||+|||++.++..+||++++++.|+|...|++..+
T Consensus 138 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-----~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 138 SLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL-----KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-----HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999988 23488999999999999999999999999999988866544
No 60
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=3.8e-17 Score=163.50 Aligned_cols=158 Identities=20% Similarity=0.269 Sum_probs=126.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCccccchhHHHHHHHHcCCccc--ccc
Q 000957 1024 MANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAEL--EMR 1101 (1209)
Q Consensus 1024 ~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 1101 (1209)
|++..+...+++|+|++...+.... ....+|...|... .......+..++.++|+.+. ...
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~-----~~~~l~~~~~~~~------------e~~~~e~A~~~Le~vgL~~~a~~~A 147 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLG-----LSGLLGRPRARKE------------EREARERARELLEFVGLGELADRPA 147 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhh-----hhhhhccccchhh------------HHHHHHHHHHHHHHcCCchhhcchh
Confidence 6667778888889999888775543 1122222111100 12234567788889987763 344
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhh
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIG 1181 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~ 1181 (1209)
+.||+|++. ||-||+||+.+|.+|+||||.+||.+.....+.+.|+++ +...|.+|++|-|||.++..+|
T Consensus 148 ~~LsyG~qR------~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i----~~~~g~tillIEHdM~~Vm~l~ 217 (250)
T COG0411 148 GNLSYGQQR------RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL----RDRGGVTILLIEHDMKLVMGLA 217 (250)
T ss_pred hcCChhHhH------HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHH----HhcCCcEEEEEEeccHHHhhhc
Confidence 889999999 999999999999999999999999999999999999999 3346799999999999999999
Q ss_pred hHhhhhcCcEEeecCCccccccccccc
Q 000957 1182 QRQHAEKYYRVAKDDHQHSIIEAQEIF 1208 (1209)
Q Consensus 1182 ~~~~~~~~~~v~~~~~~~s~~~~~~~~ 1208 (1209)
|+++++++|+|..+|+|..+...+.+.
T Consensus 218 dri~Vl~~G~~IAeG~P~eV~~dp~Vi 244 (250)
T COG0411 218 DRIVVLNYGEVIAEGTPEEVRNNPRVI 244 (250)
T ss_pred cEEEeccCCcCcccCCHHHHhcCHHhH
Confidence 999999999999999999988777653
No 61
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.68 E-value=5.5e-17 Score=181.69 Aligned_cols=143 Identities=22% Similarity=0.247 Sum_probs=114.4
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
++.++++||.+ |+ .+..+++.+.....+ ......+..++..++... ...++.|||||+| |++||+|
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~Q------RV~lARA 143 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQ------RVGLARA 143 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHH------HHHHHHH
Confidence 45688898886 44 477888766432211 112234556677777654 4566899999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
|+.+|++|+|||||++|||.++..|.+.|..+. ...|.|||+||||++++..+||+++++..|+|...|++..++.
T Consensus 144 L~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~----~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 144 LAAEPDILLMDEAFSALDPLIRDSMQDELKKLQ----ATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999999999999999999999999882 2347899999999999999999999999999999987766654
Q ss_pred c
Q 000957 1204 A 1204 (1209)
Q Consensus 1204 ~ 1204 (1209)
.
T Consensus 220 ~ 220 (363)
T TIGR01186 220 N 220 (363)
T ss_pred C
Confidence 3
No 62
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.68 E-value=6.6e-17 Score=180.41 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=111.1
Q ss_pred HHHHHHhhhcccc----c-CCcchhhhhhcc-----CCccccchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHH
Q 000957 1050 EINKIIRELWQQT----Y-RGQDIDYIRIHS-----DSEGAGTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~i 1116 (1209)
.+++.++++||.. + ..+..+++.... +.........+..++..++..+ ..+++.|||||+|
T Consensus 95 ~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~Q------ 168 (331)
T PRK15079 95 AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQ------ 168 (331)
T ss_pred HHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH------
Confidence 3455678888875 2 245666654321 1111112234455666777632 4567899999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++||+||+.+|++|||||||++||+.++..+.++|..+. ...|.++|+||||+.++..+||++++++.|+|+..|
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~----~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ----REMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999999999883 234789999999999999999999999999999988
Q ss_pred Ccccccc
Q 000957 1197 HQHSIIE 1203 (1209)
Q Consensus 1197 ~~~s~~~ 1203 (1209)
+...++.
T Consensus 245 ~~~~i~~ 251 (331)
T PRK15079 245 TYDEVYH 251 (331)
T ss_pred CHHHHHc
Confidence 7666554
No 63
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=5e-17 Score=183.06 Aligned_cols=143 Identities=16% Similarity=0.132 Sum_probs=114.7
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+ .+..+++.+.....+ ......+..++..++... ...++.|||||+| |++|||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~Q------RvalARAL 149 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQ------RVAMGRAI 149 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHH------HHHHHHHH
Confidence 5678899986 54 478888876432211 111234456667777654 3566899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||++||+.++..+...|..+. ...|.++|+||||...+..+||++++++.|+|...|++..++..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH----RRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999883 23478999999999999999999999999999999887776554
Q ss_pred c
Q 000957 1205 Q 1205 (1209)
Q Consensus 1205 ~ 1205 (1209)
+
T Consensus 226 p 226 (356)
T PRK11650 226 P 226 (356)
T ss_pred C
Confidence 3
No 64
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=5.8e-17 Score=180.82 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=96.3
Q ss_pred hHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1084 SYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1084 ~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
..+..++..+|... ..+++.|||||+| |++||+||+.+|++|||||||++||+.++..|.++|.++.
T Consensus 132 ~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q------Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~---- 201 (327)
T PRK11308 132 EKALAMMAKVGLRPEHYDRYPHMFSGGQRQ------RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ---- 201 (327)
T ss_pred HHHHHHHHHCCCChHHhcCCCccCCHHHHH------HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH----
Confidence 34556677777642 4567899999999 9999999999999999999999999999999999999883
Q ss_pred cCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1161 GQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
...|.++|+||||+.++..+||++++++.|+|+..|+...++..
T Consensus 202 ~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~ 245 (327)
T PRK11308 202 QELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245 (327)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 33588999999999999999999999999999999876666543
No 65
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=8.9e-17 Score=172.88 Aligned_cols=143 Identities=19% Similarity=0.224 Sum_probs=108.2
Q ss_pred HHHHHhhhcccc--cCC-cchhhhhhccCCc----cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRG-QDIDYIRIHSDSE----GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+.+.++++|+.. |++ +..+++.+..... .......+..++..++... ...++.|||||+| |++||
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~ia 148 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKK------RVALA 148 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH------HHHHH
Confidence 344566777764 343 6677665432111 1111223445566666544 3456889999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|+|||||+|||+.++..|..+|.++. ...|.+||+||||.+++..+||+++.+..|++...|+...+
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLK----KELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999999999999999883 22478999999999999999999999999999988876655
Q ss_pred cc
Q 000957 1202 IE 1203 (1209)
Q Consensus 1202 ~~ 1203 (1209)
+.
T Consensus 225 ~~ 226 (235)
T cd03261 225 RA 226 (235)
T ss_pred cC
Confidence 43
No 66
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=8.1e-17 Score=177.50 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=113.0
Q ss_pred HHHHHHhhhcccc----cCCcchhhhhhccCCc---cccchhHHHHHHHHcCCc--c--ccccCCCChhhhhhhhHHHHH
Q 000957 1050 EINKIIRELWQQT----YRGQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDA--E--LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~--~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
.+...++++||.+ |+.+..+++.+..... .......+..++..+|.. . ...+..|||||+| |+
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~q------rv 153 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKR------RV 153 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHH------HH
Confidence 4556778888864 4567777776532111 111122345567777764 2 3456899999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||+||+.+|++|||||||+|||+.++..|.++|.++. ...|.|||+||||+.++..+||+++++..|++...|+.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~ 229 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH----KEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999883 22478999999999999999999999999999998877
Q ss_pred ccccc
Q 000957 1199 HSIIE 1203 (1209)
Q Consensus 1199 ~s~~~ 1203 (1209)
..++.
T Consensus 230 ~~~~~ 234 (287)
T PRK13637 230 REVFK 234 (287)
T ss_pred HHHHh
Confidence 66543
No 67
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=7.8e-17 Score=177.70 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=113.1
Q ss_pred HHHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHH
Q 000957 1049 EEINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
..+++.++++||.+ |.++..+++.+.....+ ......+..++..++.. . ...+..|||||++ |+
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkq------rv 153 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMR------RV 153 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHH------HH
Confidence 34566788888853 56677777765322111 11122344556666753 2 3556899999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|+|||||++||+.++..|...|..+ ...|.|||+||||++++..+||+++++..|+|..+|++
T Consensus 154 aiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l-----~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 154 AIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI-----HQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH-----HHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999887 23478999999999999999999999999999999987
Q ss_pred ccccc
Q 000957 1199 HSIIE 1203 (1209)
Q Consensus 1199 ~s~~~ 1203 (1209)
..++.
T Consensus 229 ~~~~~ 233 (288)
T PRK13643 229 SDVFQ 233 (288)
T ss_pred HHHHc
Confidence 66654
No 68
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.67 E-value=8.2e-17 Score=180.12 Aligned_cols=142 Identities=20% Similarity=0.105 Sum_probs=112.3
Q ss_pred HHHHHHhhhcccc--c-CCcchhhhhhccCCccc---cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1050 EINKIIRELWQQT--Y-RGQDIDYIRIHSDSEGA---GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+.+.++++|+.. | ..+..+++.+....++. ........++..++... ...++.|||||+| |++||
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kq------rv~lA 184 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKR------RLTLA 184 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHH------HHHHH
Confidence 4556688888875 2 34667777654332221 11223445666676553 4556899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
+||+++|++|||||||+||||.++..|+++|.++ ...|.+||++||+++.+..+||++++.+.|+|...|++..+
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l-----~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSL-----LARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-----HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999988 23588999999999999999999999999999999977665
Q ss_pred c
Q 000957 1202 I 1202 (1209)
Q Consensus 1202 ~ 1202 (1209)
.
T Consensus 260 ~ 260 (340)
T PRK13536 260 I 260 (340)
T ss_pred H
Confidence 4
No 69
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.67 E-value=4e-17 Score=176.35 Aligned_cols=145 Identities=21% Similarity=0.196 Sum_probs=120.1
Q ss_pred HHHHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
-.+.++++||.+ ||. +++++|.+.....+ ......+..+....+..+ ...|..|||||+| |+||||
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQ------RVAlaR 146 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQ------RVALAR 146 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHH------HHHHHH
Confidence 346789999998 766 89999988544332 223334555666667665 3567899999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
|+..+|.+++||||+++||...+..+...|+.+- ...|.|+|+||||...+..++|++.+++.|+|...|++..+.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh----~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH----ERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH----HhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 9999999999999999999999999999998873 345889999999999999999999999999999999888877
Q ss_pred ccc
Q 000957 1203 EAQ 1205 (1209)
Q Consensus 1203 ~~~ 1205 (1209)
.++
T Consensus 223 ~~P 225 (338)
T COG3839 223 ERP 225 (338)
T ss_pred hCc
Confidence 554
No 70
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.1e-16 Score=178.10 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=112.1
Q ss_pred HHHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHH
Q 000957 1049 EEINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
..+++.++++||.+ |+++..+++.+.....+ ......+..++..++.. . ...+..|||||+| |+
T Consensus 112 ~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkq------Rv 185 (320)
T PRK13631 112 KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKR------RV 185 (320)
T ss_pred HHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHH------HH
Confidence 44567788899863 56677777755321111 11122344566666664 2 3455789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|||||||+|||+.++..|.+.|..+ ...|.|||+||||++++..+||+++++..|+|...|+.
T Consensus 186 aiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l-----~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~ 260 (320)
T PRK13631 186 AIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDA-----KANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260 (320)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH-----HHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999987 23478999999999999999999999999999999877
Q ss_pred ccccc
Q 000957 1199 HSIIE 1203 (1209)
Q Consensus 1199 ~s~~~ 1203 (1209)
..++.
T Consensus 261 ~~~~~ 265 (320)
T PRK13631 261 YEIFT 265 (320)
T ss_pred HHHhc
Confidence 65543
No 71
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=7.3e-17 Score=181.06 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=115.4
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
++.++++||.+ |++ +..+++.+.....+ ......+..++..++... ..++..|||||+| |+||||+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~Q------RVaLARa 150 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQ------RVALARA 150 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH------HHHHHHH
Confidence 35678899986 554 78888876432211 112234455666666654 3566899999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
|+.+|++|+|||||++||+..+..+...|..+. ...|.|+|+||||...+..+||++++++.|+|...|++..++.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~----~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQ----QQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999883 2347899999999999999999999999999999998777665
Q ss_pred cc
Q 000957 1204 AQ 1205 (1209)
Q Consensus 1204 ~~ 1205 (1209)
.+
T Consensus 227 ~p 228 (351)
T PRK11432 227 QP 228 (351)
T ss_pred CC
Confidence 43
No 72
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.67 E-value=6e-17 Score=182.24 Aligned_cols=144 Identities=18% Similarity=0.271 Sum_probs=114.6
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
.+.++++||.+ |++ +..+++.+.....+ ......+..++..++... ...++.|||||+| |+|||+|
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~Q------RvaLARA 151 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQ------RIAIARA 151 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHH------HHHHHHH
Confidence 35678889886 554 77888865432211 111234556677777654 4566899999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC-CcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE-NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~-~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
|+.+|++|+|||||++||+..+..+...|..+. ... |.|+|+||||+.++..+||++++++.|+|...|++..++
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~----~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALH----EELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH----HhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999883 223 789999999999999999999999999999999877776
Q ss_pred ccc
Q 000957 1203 EAQ 1205 (1209)
Q Consensus 1203 ~~~ 1205 (1209)
..+
T Consensus 228 ~~p 230 (362)
T TIGR03258 228 DAP 230 (362)
T ss_pred hCc
Confidence 543
No 73
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=7.9e-17 Score=179.90 Aligned_cols=111 Identities=24% Similarity=0.272 Sum_probs=96.3
Q ss_pred hHHHHHHHHcCCcc-----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHh
Q 000957 1084 SYSYKVLMQTGDAE-----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMED 1158 (1209)
Q Consensus 1084 ~~~~~~~~~~~~~~-----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~ 1158 (1209)
..+..++..++..+ ..+++.|||||+| |++||+||+.+|++|||||||++||+.++..+.++|.++.
T Consensus 129 ~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q------Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~-- 200 (326)
T PRK11022 129 QRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ------RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQ-- 200 (326)
T ss_pred HHHHHHHHHCCCCChHHHHhCCchhCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--
Confidence 34566777777643 3467899999999 9999999999999999999999999999999999999983
Q ss_pred hccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1159 RKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1159 ~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
...|.++|+||||+.++..+||++++++.|+|+..|+...++..
T Consensus 201 --~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~ 244 (326)
T PRK11022 201 --QKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRA 244 (326)
T ss_pred --HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 23578999999999999999999999999999999877666543
No 74
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.67 E-value=1.2e-16 Score=181.24 Aligned_cols=145 Identities=18% Similarity=0.188 Sum_probs=113.5
Q ss_pred HHHHHHHhhhcccc---cCCcchhhhhhccCCc-------cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHH
Q 000957 1049 EEINKIIRELWQQT---YRGQDIDYIRIHSDSE-------GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~i 1116 (1209)
..+.+.++++++.. +..+..+++.+...++ .......+..++..++..+ ...+..|||||+|
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQ------ 146 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQ------ 146 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH------
Confidence 44566678888765 3456777776532211 1111234455666777654 3455889999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++||++|+++|++|+|||||+|||+.++..|..+|+++. ..|.+||++|||++++..+||++++++.|+|...|
T Consensus 147 Rv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~-----~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 147 RVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV-----DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999999999999999999999999999983 34789999999999999999999999999999999
Q ss_pred Cccccccc
Q 000957 1197 HQHSIIEA 1204 (1209)
Q Consensus 1197 ~~~s~~~~ 1204 (1209)
++..++..
T Consensus 222 ~~~ev~~~ 229 (402)
T PRK09536 222 PPADVLTA 229 (402)
T ss_pred CHHHHhCc
Confidence 87765543
No 75
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.2e-16 Score=180.12 Aligned_cols=142 Identities=21% Similarity=0.274 Sum_probs=110.5
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+++.++++|+.+ |+ .+..+++.+.....+ .........++..++... ...++.|||||+| |++||+
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~q------Rv~lAr 153 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQ------RVAIAR 153 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH------HHHHHH
Confidence 345677888875 33 567777765422111 111223455666676644 3456899999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+|+.+|++|+|||||+|||+.++..|.++|.++. ...|.+||+||||++++..+||+++++..|+|...|+...++
T Consensus 154 aL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~----~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 154 ALASNPKVLLCDEATSALDPATTRSILELLKDIN----RELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999883 234789999999999999999999999999999888665554
No 76
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.66 E-value=9.3e-17 Score=179.39 Aligned_cols=110 Identities=22% Similarity=0.188 Sum_probs=95.3
Q ss_pred hHHHHHHHHcCCcc-----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHh
Q 000957 1084 SYSYKVLMQTGDAE-----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMED 1158 (1209)
Q Consensus 1084 ~~~~~~~~~~~~~~-----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~ 1158 (1209)
.++..++..++... ..+++.|||||+| |++||+||+.+|++|||||||++||+.++..|..+|.++.
T Consensus 137 ~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q------Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~-- 208 (330)
T PRK09473 137 EESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ------RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELK-- 208 (330)
T ss_pred HHHHHHHHHcCCCChHHHhcCCcccCCHHHHH------HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--
Confidence 34556666666543 2367899999999 9999999999999999999999999999999999999883
Q ss_pred hccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1159 RKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1159 ~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
...|.++|+||||+.++..+||++++++.|+|+..|+...++.
T Consensus 209 --~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 209 --REFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred --HHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 2347899999999999999999999999999999997766654
No 77
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.66 E-value=1.9e-16 Score=168.10 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=97.4
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+.+.++++|+.. |+ .+..+++.+..... .......+..++..++..+ ...++.|||||+| |++||+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~lar 151 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQ------RVAIAR 151 (216)
T ss_pred HHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH------HHHHHH
Confidence 345567777764 33 46677765432111 1111234455666677644 3456899999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
+|+.+|++|+|||||+|||+.++..|.+.|..+ ...|.+||+||||++++..+||+++.+..|+
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEF-----NRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999987 2347899999999999998888877766554
No 78
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.66 E-value=1.3e-16 Score=179.58 Aligned_cols=142 Identities=22% Similarity=0.246 Sum_probs=113.3
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCc-------cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSE-------GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+.++++||.+ |+ .+..+++.+..... .......+..++..++... ..++..|||||+| |++|
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~Q------Rval 147 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQ------RVAL 147 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH------HHHH
Confidence 4678889875 55 37778876643211 1111234555666776544 4567899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|+||+.+|++|+|||||++||+.++..+...|.++. ...|.|+|+||||+.++..+||+++++..|+|...|++..
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~----~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH----EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999883 3347899999999999999999999999999999987776
Q ss_pred cccc
Q 000957 1201 IIEA 1204 (1209)
Q Consensus 1201 ~~~~ 1204 (1209)
++..
T Consensus 224 i~~~ 227 (353)
T PRK10851 224 VWRE 227 (353)
T ss_pred HHhC
Confidence 6544
No 79
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=1.6e-16 Score=175.43 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=111.4
Q ss_pred HHHHHHhhhcccc----cCCcchhhhhhccCC---ccccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHH
Q 000957 1050 EINKIIRELWQQT----YRGQDIDYIRIHSDS---EGAGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+.+.++++||.+ |+.+..+++.+.... ........+..++..++.. . ...+..|||||+| |++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q------rv~ 155 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMR------RVA 155 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHH------HHH
Confidence 4556678888863 455677776543211 1111122344566677764 3 3456899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||++|+.+|++|||||||++||+.+...|.++|..+. ...|.|||+||||++++..+||++++++.|+|..+|++.
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~----~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH----KEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999882 234789999999999999999999999999999988766
Q ss_pred cccc
Q 000957 1200 SIIE 1203 (1209)
Q Consensus 1200 s~~~ 1203 (1209)
.++.
T Consensus 232 ~~~~ 235 (290)
T PRK13634 232 EIFA 235 (290)
T ss_pred HHhc
Confidence 5543
No 80
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=3.5e-08 Score=117.94 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchHHHHHH
Q 000957 299 SDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHIDEREN 378 (1209)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~e~~l~ 378 (1209)
...+.++..+..........+......+..+-......+......+.....++.....+++..+.+ +..+...-+
T Consensus 443 ~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaese-----l~~L~~~~~ 517 (1293)
T KOG0996|consen 443 QKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESE-----LDILLSRHE 517 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 334444444444444444444444444444444444444444555555566666666666666655 555555555
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000957 379 KMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLA 425 (1209)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~~~~i~~~~~~i~~l~~el~~l~~e~~~l~ 425 (1209)
.....+..++..+. .....+.+....+..+..++..+..++....
T Consensus 518 ~~~~~~e~lk~~L~--~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~ 562 (1293)
T KOG0996|consen 518 TGLKKVEELKGKLL--ASSESLKEKKTELDDLKEELPSLKQELKEKE 562 (1293)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555555554443 2223333444444444444444444444433
No 81
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.66 E-value=1.3e-16 Score=179.42 Aligned_cols=144 Identities=22% Similarity=0.255 Sum_probs=116.4
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
.+.++++||.+ |+ .+..+++.+.....+ ......+..++..++... ...+..|||||+| |+||||+
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~Q------RvaLARa 148 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQ------RVALARA 148 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHH------HHHHHHH
Confidence 35678899986 54 478888876432211 122334566777777654 3566899999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
|+.+|++|+|||||++||+..+..+...|..+. ...|.|+|+||||...+..+||+++++..|+|...|++..++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~----~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQ----RRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999883 3357899999999999999999999999999999998777765
Q ss_pred cc
Q 000957 1204 AQ 1205 (1209)
Q Consensus 1204 ~~ 1205 (1209)
.+
T Consensus 225 ~p 226 (353)
T TIGR03265 225 HP 226 (353)
T ss_pred CC
Confidence 43
No 82
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.66 E-value=2.1e-16 Score=166.07 Aligned_cols=128 Identities=24% Similarity=0.225 Sum_probs=98.3
Q ss_pred HHHhhhcccc----cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1053 KIIRELWQQT----YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1053 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
+.++++|+.+ +..+..+++.+.....+. .......++..++..+ ...+..|||||+| |++||++|+.
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~laral~~ 143 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKELDA-GNEQAETVLKDLDLYALKERHPLSLSGGQKQ------RLAIAAALLS 143 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhcCc-cHHHHHHHHHHcCCchhcCCCchhCCHHHHH------HHHHHHHHHh
Confidence 4466777763 345667776543211111 1124456667776544 3456889999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
+|++|+|||||++||+.++..|...|..+. ..|.++|+||||+.++..+||+++.++.|+|
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELA-----AQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999872 3478999999999999999998888877765
No 83
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.65 E-value=1.4e-16 Score=179.90 Aligned_cols=143 Identities=18% Similarity=0.219 Sum_probs=114.0
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |++ +..+++.+.....+ ......+..++..++... ..++..|||||+| |+||||+|
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~Q------RVaLARaL 159 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQ------RVAIARAV 159 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH------HHHHHHHH
Confidence 5678899886 554 78888866432111 111223445666666654 4566899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||++||+..+..+...|..+. ...|.++|+||||...+..+||+++++..|+|...|++..++..
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~----~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQ----RKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999884 23478999999999999999999999999999999887776654
Q ss_pred c
Q 000957 1205 Q 1205 (1209)
Q Consensus 1205 ~ 1205 (1209)
+
T Consensus 236 p 236 (375)
T PRK09452 236 P 236 (375)
T ss_pred c
Confidence 3
No 84
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.65 E-value=1.9e-16 Score=178.10 Aligned_cols=142 Identities=23% Similarity=0.252 Sum_probs=113.0
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+ .+..+++.+..... ..........++..+|... ..+++.|||||+| |++||++|
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~Q------RV~LARAL 179 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQ------RVGLARAF 179 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH------HHHHHHHH
Confidence 3578888876 44 57788876543211 1122234556677777654 4566899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||++||+.++..+.+.|..+. ...|.|+||||||++++..+||+++++..|+|...|++..++..
T Consensus 180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~----~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIRTQLQDELLELQ----AKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999999999999999999883 22478999999999999999999999999999999877666543
No 85
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.65 E-value=1.7e-16 Score=176.62 Aligned_cols=141 Identities=20% Similarity=0.105 Sum_probs=108.8
Q ss_pred HHHHHhhhcccc--c-CCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--Y-RGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+++.++++||.. | ..+..+++.+.....+ .........++..++... ...++.|||||+| |++||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~q------rv~la~ 148 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKR------RLTLAR 148 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHH------HHHHHH
Confidence 445677888775 3 2466777654322111 111123345666666544 3456899999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+|+.+|++|||||||+|||+.++..|.++|.++ ...|.+||+||||+.++..+||+++.+..|++...|++..+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-----~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSL-----LARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-----HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999988 235889999999999999999999999999999888765543
No 86
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.2e-16 Score=174.17 Aligned_cols=145 Identities=19% Similarity=0.261 Sum_probs=113.0
Q ss_pred HHHHHHHhhhcccc----cCCcchhhhhhccCCc---cccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHH
Q 000957 1049 EEINKIIRELWQQT----YRGQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
..+++.++++||.+ |+.+..+++.+..... .......+..++..+|.. . ...+..|||||++ |+
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q------rv 154 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMR------KI 154 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH------HH
Confidence 45667788898863 4557777776532111 111123345566667764 3 2456899999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|+|||||+|||+.++..|..+|.++. ...|.|||+||||++++..+||+++.+..|+|...|++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ----TDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999882 23578999999999999999999999999999988876
Q ss_pred ccccc
Q 000957 1199 HSIIE 1203 (1209)
Q Consensus 1199 ~s~~~ 1203 (1209)
..++.
T Consensus 231 ~~~~~ 235 (286)
T PRK13646 231 KELFK 235 (286)
T ss_pred HHHHh
Confidence 55443
No 87
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.65 E-value=2e-16 Score=170.63 Aligned_cols=108 Identities=22% Similarity=0.340 Sum_probs=92.1
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
...++..++... ...++.|||||+| |++||++|+.+|++|+|||||++||+.++..|..+|.++. ..
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~ 192 (236)
T cd03219 124 AEELLERVGLADLADRPAGELSYGQQR------RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR-----ER 192 (236)
T ss_pred HHHHHHHcCccchhhCChhhCCHHHHH------HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-----HC
Confidence 345556666543 3455789999999 9999999999999999999999999999999999999872 25
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
|.+||+||||..++..+||+++....|+|...|+...++..
T Consensus 193 ~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 78999999999999999999999999999988876655443
No 88
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=1.5e-16 Score=163.32 Aligned_cols=111 Identities=19% Similarity=0.299 Sum_probs=98.9
Q ss_pred hHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1084 SYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1084 ~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
..+..++..+|... ..+++.|||||+| |++|||||+.+|.++++||||++||...+..+.++|.++ +
T Consensus 87 ~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ------Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl----q 156 (268)
T COG4608 87 ERVLELLEKVGLPEEFLYRYPHELSGGQRQ------RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL----Q 156 (268)
T ss_pred HHHHHHHHHhCCCHHHhhcCCcccCchhhh------hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH----H
Confidence 45666777777554 4678999999999 999999999999999999999999999999999999998 3
Q ss_pred cCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1161 GQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
...|.++++||||..++.++||++.+++.|+|+..|+...++..
T Consensus 157 ~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 157 EELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred HHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 45689999999999999999999999999999999987777653
No 89
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=3.1e-16 Score=171.78 Aligned_cols=139 Identities=22% Similarity=0.232 Sum_probs=107.9
Q ss_pred HHHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1049 EEINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
..++..++++|+.+ +..+..+++.+.....+ .........++..++... ...+..|||||++ |++
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~q------rv~ 148 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKK------RVA 148 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHH------HHH
Confidence 34456678888864 34567777754221111 111123445666666543 3456899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
||+||+.+|++|+|||||++||+.++..|.++|..+. ..|.|||+||||++++..+||++++++.|+|...|+.
T Consensus 149 laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLH-----NQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999882 3478999999999999999999999999999988865
No 90
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2e-16 Score=159.19 Aligned_cols=143 Identities=17% Similarity=0.218 Sum_probs=116.3
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
.+.|+|+||.. |+. ++..++.+.. +. ....+...++...|..+ .++|..||||||| |+||+|||+.
T Consensus 75 ~RriGYVFQDARLFpH~tVrgNL~YG~--~~-~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQ------RVAIGRALLt 145 (352)
T COG4148 75 KRRIGYVFQDARLFPHYTVRGNLRYGM--WK-SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQ------RVAIGRALLT 145 (352)
T ss_pred hheeeeEeeccccccceEEecchhhhh--cc-cchHhHHHHHHHhCcHHHHhhCCCccCcchhh------HHHHHHHHhc
Confidence 46789999986 543 3444444321 11 12345567888888777 4688999999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccccc
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQE 1206 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~ 1206 (1209)
.|++|+||||.+.||......+.-+|..+. ...+..|+.|||.++.+.+++|++.++..|+|...|+..++..++.
T Consensus 146 ~P~LLLmDEPLaSLD~~RK~EilpylERL~----~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~ 221 (352)
T COG4148 146 APELLLMDEPLASLDLPRKREILPYLERLR----DEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPD 221 (352)
T ss_pred CCCeeeecCchhhcccchhhHHHHHHHHHH----HhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcc
Confidence 999999999999999999999999999983 4467899999999999999999999999999999997777665554
Q ss_pred c
Q 000957 1207 I 1207 (1209)
Q Consensus 1207 ~ 1207 (1209)
+
T Consensus 222 ~ 222 (352)
T COG4148 222 F 222 (352)
T ss_pred c
Confidence 3
No 91
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.3e-16 Score=172.90 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=108.5
Q ss_pred HHHHHhhhcccc----cCCcchhhhhhccCCc---cccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1051 INKIIRELWQQT----YRGQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1051 i~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+...++++|+.+ |..+..+++.+..... .......+..++..++.. . ...++.|||||+| |++|
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q------rl~l 156 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMR------RVAI 156 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHH------HHHH
Confidence 445567777763 4456677765421111 111222345566677764 3 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|||||||+|||+.++..|...|..+ ...|.+||+||||++++..+||++++.+.|+|...|+...
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l-----~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-----QKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-----HhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999987 2358899999999999999999999999999998886554
Q ss_pred cc
Q 000957 1201 II 1202 (1209)
Q Consensus 1201 ~~ 1202 (1209)
++
T Consensus 232 ~~ 233 (287)
T PRK13641 232 IF 233 (287)
T ss_pred Hh
Confidence 43
No 92
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.4e-16 Score=178.65 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=110.1
Q ss_pred HHhhhcccc--cC-CcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1054 IIRELWQQT--YR-GQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1054 ~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
.++++||.+ |+ .+..+++.+..... .......+..++..++... ...+..|||||+| |++||++|+
T Consensus 107 ~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~Q------Rv~LArAL~ 180 (400)
T PRK10070 107 KIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQ------RVGLARALA 180 (400)
T ss_pred CEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHH------HHHHHHHHh
Confidence 467888875 44 47777776543211 1111234455667777654 3556899999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.+|++|+|||||++||+.++..|.+.|..+. ...|.|||+||||++++..+||+++++..|+|...|++..++.
T Consensus 181 ~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~----~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 181 INPDILLMDEAFSALDPLIRTEMQDELVKLQ----AKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHH----HHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999999999999999873 2347899999999999999999999999999998887665544
No 93
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.64 E-value=2e-07 Score=123.16 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=66.1
Q ss_pred cCCCChhhhhhhhHHHHHHHH------HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1101 RGRCSAGQKVLASLIIRLALA------ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la------~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
.+.||||||+++++++.+|-+ .+++.+|++++|||||++||+.++..+.++|..+ |++|||+||.+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--------~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--------DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--------CCCEEEEccch
Confidence 368999999988876666633 3466899999999999999999999999988876 68999999987
Q ss_pred HHHHHhhhHhhhhcCcEEeecC
Q 000957 1175 RFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1175 ~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
--. .+.+-....|.+.+..
T Consensus 1317 Wg~---Y~tVp~laI~el~R~~ 1335 (1353)
T TIGR02680 1317 WGC---YPEVPGLAICQLLRPD 1335 (1353)
T ss_pred hcc---ccCCCcceEEEEecCC
Confidence 321 1224455567777754
No 94
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=6.3e-16 Score=149.51 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=116.0
Q ss_pred cHHHHHHHHhhhcccc---cCCcchhhhhhccCCccccch-----hHHHHHHHHcCCcccc--ccCCCChhhhhhhhHHH
Q 000957 1047 KMEEINKIIRELWQQT---YRGQDIDYIRIHSDSEGAGTR-----SYSYKVLMQTGDAELE--MRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~lSgG~k~l~sl~i 1116 (1209)
...++.+..+.++|.+ |+-+..+.+.+..-++..+.. ......+...+...+. .-..|||||+|
T Consensus 69 ~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQ------ 142 (259)
T COG4559 69 PPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQ------ 142 (259)
T ss_pred CHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHH------
Confidence 3455666667777776 777777777775555432221 1133445555544432 23579999999
Q ss_pred HHHHHHHhccC--C----CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCc
Q 000957 1117 RLALAETFCLN--C----GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYY 1190 (1209)
Q Consensus 1117 r~~la~~~~~~--~----~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~ 1190 (1209)
|+.|||+||+= | .+|+|||||++||..|...+.++.+++. ..|+.|++|-||+++++.+||++++++.|
T Consensus 143 RVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la-----~~g~~V~~VLHDLNLAA~YaDrivll~~G 217 (259)
T COG4559 143 RVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA-----REGGAVLAVLHDLNLAAQYADRIVLLHQG 217 (259)
T ss_pred HHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHH-----hcCCcEEEEEccchHHHHhhheeeeeeCC
Confidence 99999999852 2 3899999999999999999999999993 45789999999999999999999999999
Q ss_pred EEeecCCcccccccccc
Q 000957 1191 RVAKDDHQHSIIEAQEI 1207 (1209)
Q Consensus 1191 ~v~~~~~~~s~~~~~~~ 1207 (1209)
+|...|++..++....|
T Consensus 218 rv~a~g~p~~vlt~Etl 234 (259)
T COG4559 218 RVIASGSPQDVLTDETL 234 (259)
T ss_pred eEeecCCHHHhcCHHHH
Confidence 99999999988876654
No 95
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.7e-16 Score=178.01 Aligned_cols=144 Identities=21% Similarity=0.218 Sum_probs=114.6
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
++.++++||.+ |++ +..+++.+.....+ ......+..++..++... ..++..|||||+| |+||||+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~Q------RVaLARA 163 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQ------RVALARS 163 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH------HHHHHHH
Confidence 45688899886 654 78888876432111 112234455666666644 3566899999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
|+.+|++|+|||||++||+..+..+...|..+.+ ..|.++|+||||..++..+||++++++.|+|...|++..++.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~----~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE----RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH----hcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999988853 347899999999999999999999999999999998777665
Q ss_pred cc
Q 000957 1204 AQ 1205 (1209)
Q Consensus 1204 ~~ 1205 (1209)
.+
T Consensus 240 ~p 241 (377)
T PRK11607 240 HP 241 (377)
T ss_pred CC
Confidence 43
No 96
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.64 E-value=2.5e-16 Score=178.84 Aligned_cols=141 Identities=19% Similarity=0.190 Sum_probs=111.2
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+ .+..+++.+.....+ ......+..++..++... ...++.|||||+| |++||++|
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~Q------RvaLAraL 148 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ------RVAIGRTL 148 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHH------HHHHHHHH
Confidence 4578888875 44 377787765322111 111234555667777654 3456899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+.+|++|+|||||++||+.++..+...|.++. ...|.++|+||||..++..+||+++++..|+|...|++..++.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~----~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLH----KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999883 2247899999999999999999999999999999887666554
No 97
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.64 E-value=4.4e-16 Score=164.12 Aligned_cols=132 Identities=20% Similarity=0.221 Sum_probs=100.7
Q ss_pred HHHhhhcccc--c-CCcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccC
Q 000957 1053 KIIRELWQQT--Y-RGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLN 1127 (1209)
Q Consensus 1053 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~ 1127 (1209)
+.++++|+.. | ..+..+++.+....... .......++..++... ...++.|||||++ |++||++|+.+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la~al~~~ 144 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGI-RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQ------RLGIALALLGN 144 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCC-cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHH------HHHHHHHHhcC
Confidence 4466677664 3 35667766553221111 1223445666666543 3455789999999 99999999999
Q ss_pred CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1128 CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1128 ~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++|+|||||++||+.++..|..+|.++. ..|.++|+||||..++..+||+++....|+|...|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLR-----DQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999872 35789999999999999999999999888887543
No 98
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=3.8e-16 Score=165.28 Aligned_cols=135 Identities=23% Similarity=0.221 Sum_probs=102.2
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCc-cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSE-GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
.+.++++|+.. |+ .+..+++.+..... ..........++..++... ...++.|||||++ |++||++|+
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la~al~ 147 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQ------RVALARALA 147 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHH------HHHHHHHHh
Confidence 34567777765 33 36666665432211 1111223455666666544 3456889999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
.+|++|+|||||+|||+.++..|.++|.++. ...|.+||+||||..++..+||++++...|+|...|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIK----KNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999883 223789999999999999999999999888886543
No 99
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.64 E-value=3e-16 Score=175.72 Aligned_cols=142 Identities=22% Similarity=0.246 Sum_probs=110.3
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |++ +..+++.+.....+ .........++..++... ...+..|||||+| |++||++|
T Consensus 42 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q------RvalaraL 115 (325)
T TIGR01187 42 RHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQ------RVALARAL 115 (325)
T ss_pred CCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHH------HHHHHHHH
Confidence 4567788875 443 67777765322111 111223445666666544 3456889999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||+|||+.++..|...|.++. ...|.++|+||||..++..+||++++++.|+|...|++..++..
T Consensus 116 ~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~----~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 116 VFKPKILLLDEPLSALDKKLRDQMQLELKTIQ----EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999883 23478999999999999999999999999999988877666543
No 100
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.64 E-value=6.5e-16 Score=165.35 Aligned_cols=137 Identities=19% Similarity=0.254 Sum_probs=103.3
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc--c--cchhHHHHHHHHcCCccc--cc--cCCCChhhhhhhhHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG--A--GTRSYSYKVLMQTGDAEL--EM--RGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~--~~--~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+.+.++++|+.. |..+..+++.+.....+ . ........++..++.... .. +..|||||+| |++|
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q------rv~l 152 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQ------RLCL 152 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHH------HHHH
Confidence 344566677664 34566666654221111 0 012334556666666442 23 4899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
|++|+.+|++|+|||||++||+.++..|.++|.++. .. .+||+||||..++..+||+++....|+|...|++.
T Consensus 153 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 153 ARALANEPEVLLLDEPTSALDPISTAKIEELIAELK-----KE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-----hC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 999999999999999999999999999999999882 23 79999999999999999999999999998887543
No 101
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=3e-16 Score=166.10 Aligned_cols=132 Identities=24% Similarity=0.257 Sum_probs=98.8
Q ss_pred HHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1054 IIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1054 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
.++++|+.+ |+ .+..+++.+.....+ ......+..++..++... ...+..|||||+| |++||++|+
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rl~la~al~ 146 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQ------RVALARALA 146 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH------HHHHHHHHh
Confidence 456666654 32 456666654321111 111123445666666544 3455789999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
.+|++|+|||||+|||+.++..|.+.|.++. ...|.+||+||||..++..+||+++....|+|...
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQ----RELGITTIYVTHDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999873 22478999999999999999999999888888654
No 102
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=3.6e-16 Score=149.74 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=115.6
Q ss_pred HHhhhcccc--cC-CcchhhhhhccCCcc-----ccchhHHHHHHHHcCCccc--cccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1054 IIRELWQQT--YR-GQDIDYIRIHSDSEG-----AGTRSYSYKVLMQTGDAEL--EMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1054 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
=++|++|.. |. -++.++|........ ...+.....++.-+...+. .+...||||||. |+-||||
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERR------R~EIARa 153 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERR------RVEIARA 153 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHH------HHHHHHH
Confidence 356788776 43 356777765433321 1223344567777776653 334689999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
|+.+|.|++||||++|.||-.+..+-.++..+ ...|..|+|+-|+....-.+||+.+..+.|.|...|++..++.
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L-----~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHL-----KDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHH-----HhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999988887 4679999999999999999999999999999999999999988
Q ss_pred ccccc
Q 000957 1204 AQEIF 1208 (1209)
Q Consensus 1204 ~~~~~ 1208 (1209)
.+.+.
T Consensus 229 n~~Vr 233 (243)
T COG1137 229 NEDVR 233 (243)
T ss_pred Chhhh
Confidence 76653
No 103
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.4e-16 Score=174.74 Aligned_cols=109 Identities=14% Similarity=0.224 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCcc-----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhh
Q 000957 1085 YSYKVLMQTGDAE-----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDR 1159 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~-----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~ 1159 (1209)
.+..++..+|... ...+..|||||+| |++||+||+.+|++|||||||++||+.++..+.++|.++.
T Consensus 135 ~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~Q------Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~--- 205 (330)
T PRK15093 135 RAIELLHRVGIKDHKDAMRSFPYELTEGECQ------KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLN--- 205 (330)
T ss_pred HHHHHHHHCCCCChHHHHhCCchhCCHHHHH------HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH---
Confidence 4456677777643 3566899999999 9999999999999999999999999999999999999983
Q ss_pred ccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1160 KGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1160 ~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
...|.++||||||+.++..+||++++++.|+|+..|+...++.
T Consensus 206 -~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 206 -QNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248 (330)
T ss_pred -HhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 2348899999999999999999999999999999987666654
No 104
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=5.1e-16 Score=170.32 Aligned_cols=142 Identities=20% Similarity=0.234 Sum_probs=105.2
Q ss_pred HHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+++.++++|+.+ +..+..+++.+.....+ .........++..++... ...++.|||||+| |++||
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rl~la 148 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKK------RVAIA 148 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHH------HHHHH
Confidence 345567777764 22334444443211111 111122344566666543 3455789999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|+|||||+|||+.++..|.++|.++. ..|.+||+||||+.++..+||+++.+..|+|...|++..+
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV-----AQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999872 3478999999999999999999999999999998876555
Q ss_pred cc
Q 000957 1202 IE 1203 (1209)
Q Consensus 1202 ~~ 1203 (1209)
+.
T Consensus 224 ~~ 225 (271)
T PRK13638 224 FA 225 (271)
T ss_pred hc
Confidence 43
No 105
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=4.9e-16 Score=171.10 Aligned_cols=144 Identities=20% Similarity=0.240 Sum_probs=111.5
Q ss_pred HHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.++..++++|+.+ ++.+..+++.+.....+ ......+..++..++... ...+..|||||+| |++|
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q------rl~l 152 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKK------RVAI 152 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHH------HHHH
Confidence 4556778888875 35677777754211111 111123445666667644 3456889999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|||||||+|||+.++..|.++|..+. .+.|.+||+||||++++..+||+++++..|++...|+...
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ----KELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999883 2347899999999999999999999999999999887665
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
++.
T Consensus 229 ~~~ 231 (283)
T PRK13636 229 VFA 231 (283)
T ss_pred Hhc
Confidence 543
No 106
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=5.3e-16 Score=165.01 Aligned_cols=137 Identities=20% Similarity=0.212 Sum_probs=103.6
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
.+.++++|+.. ++ .+..+++.+.....+ .........++..++... ...++.|||||+| |++||++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------r~~la~a 145 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRR------RLEIARS 145 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHH------HHHHHHH
Confidence 34566777765 23 255666654321111 111223445666666543 3456899999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
|+.+|++|+|||||++||+.++..|...|.++. .+.|.+||+||||..++..+|++++....|+|...+++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 216 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK----EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCCh
Confidence 999999999999999999999999999999883 22378999999999999999999999999999877653
No 107
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.63 E-value=6.2e-16 Score=163.71 Aligned_cols=128 Identities=22% Similarity=0.225 Sum_probs=96.2
Q ss_pred HHHHhhhcccc-----cCCcchhhhhhccCCc-------cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHH
Q 000957 1052 NKIIRELWQQT-----YRGQDIDYIRIHSDSE-------GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1052 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+.++++|+.+ ++.+..+++.+..... ..........++..++... ...++.|||||+| |
T Consensus 67 ~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------r 140 (213)
T cd03235 67 RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQ------R 140 (213)
T ss_pred HhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHH------H
Confidence 44567777764 2356777765532111 0111123445666666543 3456899999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCc
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYY 1190 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~ 1190 (1209)
++||++|+.+|++|+|||||+|||+.++..|.++|.++. ..|.++|+||||..++..+||+++.+..+
T Consensus 141 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR-----REGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 999999999999999999999999999999999999872 35789999999999999999988877653
No 108
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.63 E-value=6e-16 Score=168.65 Aligned_cols=142 Identities=17% Similarity=0.265 Sum_probs=108.3
Q ss_pred HHHHHHhhhcccc--cC-Ccchhhhhhcc----CCccccchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHH
Q 000957 1050 EINKIIRELWQQT--YR-GQDIDYIRIHS----DSEGAGTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+.+.++++++.. |+ .+..+++.+.. .............++..++... ...++.|||||++ |++
T Consensus 89 ~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q------rv~ 162 (257)
T PRK10619 89 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ------RVS 162 (257)
T ss_pred HHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH------HHH
Confidence 3445577777775 33 35666664311 1111112233455666676643 2456889999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||++|+.+|++|+|||||+|||+.++..|.++|..+ ...|.++|+||||..++..+||+++....|+++..|+..
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-----~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL-----AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----HhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999987 335889999999999999999999999999999887655
Q ss_pred ccc
Q 000957 1200 SII 1202 (1209)
Q Consensus 1200 s~~ 1202 (1209)
.++
T Consensus 238 ~~~ 240 (257)
T PRK10619 238 QLF 240 (257)
T ss_pred Hhh
Confidence 544
No 109
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=6.3e-16 Score=169.88 Aligned_cols=143 Identities=22% Similarity=0.275 Sum_probs=110.3
Q ss_pred HHHHHHhhhcccc---c-CCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT---Y-RGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.+++.++++|+.+ | ..+..+++.+.....+ ......+..++..++... ...++.|||||+| |++|
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~q------rv~l 151 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQ------RVAI 151 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH------HHHH
Confidence 4556778888864 2 3467777765321111 111234556677777654 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|+|||||+|||+.++..|...|..+. ...|.|||+||||+.++. +||++++.+.|++..+|++..
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIR----DDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999883 224889999999999994 799999999999998887665
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
++.
T Consensus 227 ~~~ 229 (279)
T PRK13650 227 LFS 229 (279)
T ss_pred HHc
Confidence 543
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=8.1e-16 Score=162.54 Aligned_cols=133 Identities=19% Similarity=0.212 Sum_probs=99.5
Q ss_pred HHHHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+.+.++++|+.. |++ +..+++.+.....+ .........++..++... ...++.|||||++ |++||+
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la~ 143 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRR------RVGIAQ 143 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHH------HHHHHH
Confidence 345566777765 333 55666654221111 111223445566666543 3456889999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
+|+.+|++|+|||||+|||+.++..|.++|..+ .. +.++|+||||..++..+||+++++..|+|...
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL-----GE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----hC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999987 22 47999999999999999999998888888654
No 111
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.63 E-value=7.9e-16 Score=167.40 Aligned_cols=141 Identities=18% Similarity=0.307 Sum_probs=107.3
Q ss_pred HHHHHhhhcccc--cC-Ccchhhhhhcc----CCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHS----DSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+...++++|+.. |+ .+..+++.+.. ..........+..++..++... ...++.|||||++ |++||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~q------rv~la 156 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQ------RVAIA 156 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHH------HHHHH
Confidence 345567777764 33 46677765421 1111111223445566666543 3456889999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|||||||++||+.++..|..+|..+ ...|.+||+||||..++..+||+++++..|+|...|+...+
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQL-----AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----HhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999987 23478999999999999999999999999999988876554
Q ss_pred c
Q 000957 1202 I 1202 (1209)
Q Consensus 1202 ~ 1202 (1209)
+
T Consensus 232 ~ 232 (250)
T PRK11264 232 F 232 (250)
T ss_pred h
Confidence 4
No 112
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.63 E-value=4.6e-16 Score=176.45 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=110.8
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCcc-ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSEG-AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
++.++++||.+ |++ +..+++.+...... .........++..++... ...+..|||||+| |++||++|+
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkq------RvalAraL~ 147 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQ------RVAIGRALL 147 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH------HHHHHHHHH
Confidence 34567788775 443 67777765321111 111223455666677654 3456889999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccccc
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~ 1205 (1209)
.+|++|+|||||+|||+.++..|...|.++. ...|.++|+||||++++..+||+++.+..|+|...|++..++..+
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~----~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLH----AEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999999999999883 224789999999999999999999999999999888766655443
No 113
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=6e-16 Score=170.03 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=109.5
Q ss_pred HHHHHHhhhcccc----cCCcchhhhhhccCC---ccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT----YRGQDIDYIRIHSDS---EGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.+...++++|+.+ +..+..+++.+.... ........+..++..++... ...+..|||||++ |++|
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q------rl~l 148 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKK------RVAI 148 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHH------HHHH
Confidence 3445567777763 345666666542211 11111123445666666543 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|||||||+|||+.++..|.++|..+. ...|.|||+|||+++++..+||+++.++.|++...|+...
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLP----ETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHH
Confidence 999999999999999999999999999999999883 2247899999999999999999999999999999987666
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
++.
T Consensus 225 ~~~ 227 (277)
T PRK13652 225 IFL 227 (277)
T ss_pred Hhc
Confidence 554
No 114
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.63 E-value=5.8e-16 Score=164.73 Aligned_cols=134 Identities=19% Similarity=0.166 Sum_probs=102.1
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+.+.++++|+.. |+ .+..+++.+.....+ .........++..++..+ ...++.|||||++ |++||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~lar 149 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQ------KVAIAR 149 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHH------HHHHHH
Confidence 345567777775 44 366777654322111 111223445666666644 3456789999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
+|+.+|++|+|||||++||+.++..|..+|..+ ...|.++|+||||..++..+||+++.+..|+|...
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-----RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 999999999999999999999999999999987 23478999999999999999999988888888654
No 115
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.63 E-value=7.1e-16 Score=168.84 Aligned_cols=142 Identities=17% Similarity=0.162 Sum_probs=106.5
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCc----cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSE----GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
.+.++++|+.. |++ +..+++.+..... ..........++..++... ...++.|||||+| |++||+
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q------rv~lar 156 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMAR------RAALAR 156 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH------HHHHHH
Confidence 34466777764 343 6666665421111 0111123344556666543 3456899999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+|+.+|++|||||||+|||+.++..|.++|..+. ...|.+||+||||+.++..+||+++.+..|+|...|+...++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELN----SALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH----HhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999873 234789999999999999999999999999999888665554
Q ss_pred c
Q 000957 1203 E 1203 (1209)
Q Consensus 1203 ~ 1203 (1209)
.
T Consensus 233 ~ 233 (269)
T PRK11831 233 A 233 (269)
T ss_pred c
Confidence 3
No 116
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=7.5e-16 Score=165.97 Aligned_cols=141 Identities=23% Similarity=0.249 Sum_probs=107.1
Q ss_pred HHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1052 NKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
++.++++|+.+ |+++..+++.+.....+ ........++..++.. + ...+..|||||++ |++||++|+.
T Consensus 76 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q------rl~la~al~~ 148 (241)
T PRK14250 76 RRKIGMVFQQPHLFEGTVKDNIEYGPMLKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQ------RVSIARTLAN 148 (241)
T ss_pred hhcEEEEecCchhchhhHHHHHhcchhhcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH------HHHHHHHHhc
Confidence 44566777764 34455565543211111 1122344566666663 2 3456789999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+|++|+|||||++||+.++..+...|..+. ...|.+||+||||..++..+||+++.+..|+|...+++.+++.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLK----NKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999999999999873 2247899999999999999999999999999998887766554
No 117
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=8.8e-16 Score=166.26 Aligned_cols=141 Identities=20% Similarity=0.232 Sum_probs=106.0
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCC-----------ccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDS-----------EGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl 1114 (1209)
+.+.++++|+.. |+ .+..+++.+.... ........+..++..++... ...+..|||||+|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q---- 151 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ---- 151 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH----
Confidence 344567777764 33 4666666542110 00111223445566666543 3455789999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++||++|+.+|++|||||||+|||+.++..|...|.++. ...|.+||+||||++++..+||+++.+..|+|..
T Consensus 152 --rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 152 --RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRIN----REEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred --HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999873 2347899999999999999999999999999998
Q ss_pred cCCcccc
Q 000957 1195 DDHQHSI 1201 (1209)
Q Consensus 1195 ~~~~~s~ 1201 (1209)
.|+...+
T Consensus 226 ~~~~~~~ 232 (241)
T cd03256 226 DGPPAEL 232 (241)
T ss_pred ecCHHHh
Confidence 8866553
No 118
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=7.1e-16 Score=170.30 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=108.2
Q ss_pred HHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHH
Q 000957 1050 EINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+.+.++++|+.+ |+.+..+++.+.....+ ......+..++..++... ...++.|||||+| |++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q------rv~ 155 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMR------RVA 155 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH------HHH
Confidence 3455677788763 45677777754321111 111122344556666642 3445789999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||++|+.+|++|||||||++||+.++..|...|.++ ...|.+||+|||++.++..+||+++++..|+|...|+..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-----HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----HHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999987 234789999999999999999999999999998887665
Q ss_pred cccc
Q 000957 1200 SIIE 1203 (1209)
Q Consensus 1200 s~~~ 1203 (1209)
.++.
T Consensus 231 ~~~~ 234 (280)
T PRK13649 231 DIFQ 234 (280)
T ss_pred HHhc
Confidence 5443
No 119
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.63 E-value=6.4e-16 Score=171.68 Aligned_cols=141 Identities=21% Similarity=0.260 Sum_probs=111.4
Q ss_pred HHHHHHhhhcccc--cCC-cchhhhhhccCCcc-c--cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1050 EINKIIRELWQQT--YRG-QDIDYIRIHSDSEG-A--GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+.+.++++|+.. |++ +..+++.+....++ . ........++..++... ...++.|||||++ |++||
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q------rv~la 145 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQ------RVGLA 145 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHH------HHHHH
Confidence 3556678888875 444 67777765443222 1 11233455666777654 3455789999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
+||+++|++|||||||+|||+.++..|...|..+ . .+.+||++||+++.+..+||++++.+.|++...|+...+
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-----~-~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-----G-KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-----c-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999987 2 268999999999999999999999999999998876654
Q ss_pred c
Q 000957 1202 I 1202 (1209)
Q Consensus 1202 ~ 1202 (1209)
.
T Consensus 220 ~ 220 (301)
T TIGR03522 220 S 220 (301)
T ss_pred H
Confidence 3
No 120
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=5.4e-16 Score=175.49 Aligned_cols=142 Identities=18% Similarity=0.199 Sum_probs=112.0
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
.+.++++||.. |+ .+..+++.+... ......+..++..++..+ ...++.|||||+| |++||++|+.
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q------RvalaraL~~ 145 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMA---KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQ------RVAIGRALLT 145 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhh---hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHH------HHHHHHHHHc
Confidence 34567788875 43 466777654321 111234455666777654 3456899999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccccc
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQE 1206 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~ 1206 (1209)
+|++|+|||||++||+.++..|...|..+. ...|.++|+||||+.++..+||+++.+..|+|...|++..++..+.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~----~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLA----REINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 999999999999999999999999999883 2347899999999999999999999999999999988777765543
No 121
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.62 E-value=7.1e-16 Score=163.12 Aligned_cols=128 Identities=22% Similarity=0.265 Sum_probs=94.4
Q ss_pred HHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+.+.++++++.. +..+..+++.+.....+ .........++..++... ...++.|||||+| |++||
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~la 146 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQ------RVAIA 146 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH------HHHHH
Confidence 345567777763 23466666654221111 111223445666666543 3456899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcC
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKY 1189 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~ 1189 (1209)
++|+.+|++|+|||||+|||+.++..|.+.|.++. ..|.+||+||||+.++..+||+++++..
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-----~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK-----AEGKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999872 2478999999999999988888766544
No 122
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=5.7e-16 Score=164.73 Aligned_cols=134 Identities=23% Similarity=0.266 Sum_probs=100.5
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
..++++|+.. |+ .+..+++.+.....+ ......+..++..++... ...++.|||||+| |++||++|
T Consensus 73 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rl~la~al 146 (220)
T cd03293 73 PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQ------RVALARAL 146 (220)
T ss_pred CcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHH------HHHHHHHH
Confidence 3456677654 33 466666654321111 111223445666666644 3455889999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc--CcEEeecC
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK--YYRVAKDD 1196 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~--~~~v~~~~ 1196 (1209)
+.+|++|+|||||+|||+.++..|.++|.++. ...|.+||+|||++.++..+||+++.+. .|+|...+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIW----RETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHH----HHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 99999999999999999999999999999873 2347899999999999999999988887 68887655
No 123
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.62 E-value=8.3e-16 Score=165.94 Aligned_cols=142 Identities=21% Similarity=0.340 Sum_probs=107.5
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccC-Ccc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSD-SEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+++.++++|+.. |+ .+..+++.+... ..+ ......+..++..++... ...+..|||||++ |++||
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q------rv~la 148 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQ------RVAIA 148 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHH------HHHHH
Confidence 345567777764 33 466676654211 011 111223445666666543 3455789999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++++|||||+|||+.++..|.++|..+. ..|.+||+|||+..++..+||+++....|+|+..|+...+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA-----EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999872 3478999999999999999999999999999988866554
Q ss_pred cc
Q 000957 1202 IE 1203 (1209)
Q Consensus 1202 ~~ 1203 (1209)
..
T Consensus 224 ~~ 225 (240)
T PRK09493 224 IK 225 (240)
T ss_pred hc
Confidence 43
No 124
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.62 E-value=8.6e-16 Score=165.76 Aligned_cols=133 Identities=26% Similarity=0.310 Sum_probs=104.0
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
.+.++++|+.. |+ .+..+++.+... . ........++..++..+ ...++.|||||+| |++||++|+.
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~--~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkq------rl~laraL~~ 150 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK--G-QWRDAALQALAAVGLADRANEWPAALSGGQKQ------RVALARALIH 150 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc--c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHH------HHHHHHHHhc
Confidence 34567777764 33 466777654311 1 11223445666666644 3456899999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
+|++|||||||+|||+.++..|.++|..+. ...|.+||+||||..++..+||+++....|+|..+++
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLW----QQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 999999999999999999999999999873 2347899999999999999999999999999988764
No 125
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=9.1e-16 Score=164.93 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=107.2
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
.+.++++|+.. |+ .+..+++.+.....+ ......+..++..++... ...+..|||||++ |++||++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la~a 154 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQ------RVGIARA 154 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHH------HHHHHHH
Confidence 44567777764 33 466777654321111 111223445666666544 2455789999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
|+.+|++|+|||||+|||+.++..|.+.|.++. .+.|.+||+|||+.+++..+||+++.+..|+|...++...+.
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDIN----RELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999873 234789999999999999999999999999999888655443
No 126
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=8e-16 Score=168.24 Aligned_cols=140 Identities=20% Similarity=0.227 Sum_probs=106.3
Q ss_pred HHhhhcccc--c-CCcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1054 IIRELWQQT--Y-RGQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1054 ~~~~~~~~~--~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
.++++|+.. | ..+..+++.+..... .......+..++..++..+ ...++.|||||+| |++||++|+
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q------rv~lAral~ 176 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQ------RVGLARALA 176 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHH------HHHHHHHHh
Confidence 456677664 3 346666665432111 1111223445666666644 3456899999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.+|++|||||||+|||+.++..|...|.++. ...|.+||+||||+.++..+||+++.+..|+|...|+...++.
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQ----AELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999873 2247899999999999999999999999999998886655543
No 127
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=8.1e-16 Score=162.54 Aligned_cols=133 Identities=21% Similarity=0.269 Sum_probs=101.2
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCc-c--ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSE-G--AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++|+.. |++ +..+++.+..... . .........++..++... ...+..|||||++ |++||++|
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~ia~al 143 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQ------RVALARVL 143 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHH------HHHHHHHH
Confidence 4467777775 333 5667765432211 1 111223455666666543 3456899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
+.+|++|+|||||++||+.++..|.++|..+. ...|.++|+|||++.++..+||+++....|+|...
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLH----AETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 99999999999999999999999999999873 23478999999999999999999999888888654
No 128
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.62 E-value=1.1e-15 Score=165.70 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=106.0
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCC-----------ccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDS-----------EGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl 1114 (1209)
++..++++|+.. |+ .+..+++.+.... ........+..++..++... ...+..|||||++
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q---- 152 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQ---- 152 (243)
T ss_pred HHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH----
Confidence 345567777764 33 4566666432110 00111223445566666544 3455789999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++||++|+.+|++|+|||||++||+.++..|...|.++. ...|.+||+|||+..++..+||+++.+..|++..
T Consensus 153 --rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 153 --RVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRIN----KEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred --HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 9999999999999999999999999999999999999873 2247899999999999999999999999999998
Q ss_pred cCCcccc
Q 000957 1195 DDHQHSI 1201 (1209)
Q Consensus 1195 ~~~~~s~ 1201 (1209)
.|+...+
T Consensus 227 ~~~~~~~ 233 (243)
T TIGR02315 227 DGAPSEL 233 (243)
T ss_pred cCCHHHh
Confidence 8865543
No 129
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1e-15 Score=166.85 Aligned_cols=141 Identities=17% Similarity=0.220 Sum_probs=106.8
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCc----c--ccccCCCChhhhhhhhHHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDA----E--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
+.+.++++|+.. |+.+..+++.+.....+ .........++..++.. . ...++.|||||+| |++
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q------rv~ 164 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQ------RLC 164 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHH------HHH
Confidence 345567777764 45677777765321111 01112234455555542 1 2345789999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||++|+.+|++|+|||||+|||+.++..|.++|.++ . .|.+||+||||..++..+||+++++..|+|...|++.
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-----~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-----K-KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-----h-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999987 2 2689999999999999999999999999999888766
Q ss_pred cccc
Q 000957 1200 SIIE 1203 (1209)
Q Consensus 1200 s~~~ 1203 (1209)
.++.
T Consensus 239 ~~~~ 242 (258)
T PRK14268 239 QIFH 242 (258)
T ss_pred HHhc
Confidence 6554
No 130
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=9.5e-16 Score=166.96 Aligned_cols=143 Identities=16% Similarity=0.238 Sum_probs=107.9
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+++.++++|+.. |+++..+++.+.....+. ........++..++..+ ...++.|||||+| |
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q------r 157 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ------R 157 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH------H
Confidence 3455678888764 556777777553211110 11122334455555421 2345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.++..|.++|.++ . .+.+||+||||..++..+||+++.+..|+|...|+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-----K-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGP 231 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----h-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 2 25799999999999999999999999999998887
Q ss_pred ccccccc
Q 000957 1198 QHSIIEA 1204 (1209)
Q Consensus 1198 ~~s~~~~ 1204 (1209)
...++..
T Consensus 232 ~~~~~~~ 238 (253)
T PRK14242 232 TEQIFTR 238 (253)
T ss_pred HHHHHcC
Confidence 6655543
No 131
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.62 E-value=5.3e-16 Score=166.81 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=104.5
Q ss_pred HHhhhcccc--cCC-cchhhhhhccCCccc---cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1054 IIRELWQQT--YRG-QDIDYIRIHSDSEGA---GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1054 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
.++++|+.. |++ +..+++.+.....+. ........++..++... ...++.|||||+| |++||++|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~la~al~ 149 (232)
T cd03218 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERR------RVEIARALA 149 (232)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH------HHHHHHHHh
Confidence 356666654 443 566666543211111 11122334555666543 3456789999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.+|++|+|||||+|||+.++..|..+|.++. ..|.+||+||||++++..+||+++.+..|++...++...+..
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~-----~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILK-----DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999999872 347899999999999999999999999999988876555443
No 132
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=8.2e-16 Score=165.75 Aligned_cols=140 Identities=21% Similarity=0.229 Sum_probs=106.1
Q ss_pred HHhhhcccc--cC-CcchhhhhhccCCcc-------ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1054 IIRELWQQT--YR-GQDIDYIRIHSDSEG-------AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1054 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.++++++.+ |+ .+..+++.+.....+ .........++..++... ...+..|||||+| |++||
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~la 148 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQ------RVALA 148 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH------HHHHH
Confidence 456677764 33 466676654321111 011123345566666643 3456789999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|+|||||++||+.++..|..+|.++. ...|.+||+||||..++..+||+++++..|+|...|++..+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH----DELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999999999999999873 22378999999999999999999999999999988876655
Q ss_pred cc
Q 000957 1202 IE 1203 (1209)
Q Consensus 1202 ~~ 1203 (1209)
..
T Consensus 225 ~~ 226 (239)
T cd03296 225 YD 226 (239)
T ss_pred hc
Confidence 43
No 133
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=9.8e-16 Score=168.16 Aligned_cols=143 Identities=20% Similarity=0.277 Sum_probs=109.8
Q ss_pred HHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.+...++++|+.+ |..+..+++.+.....+ .........++..++... ...++.|||||++ |++|
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~q------rv~l 148 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKK------RVAI 148 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHH------HHHH
Confidence 3456678888873 45567777654211111 111123445666666543 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|+|||||+|||+.++..|..+|..+. ..|.+||+||||..++..+||+++.+..|++...|+...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-----~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN-----KEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999872 247899999999999999999999999999999887665
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
++.
T Consensus 224 ~~~ 226 (275)
T PRK13639 224 VFS 226 (275)
T ss_pred Hhc
Confidence 543
No 134
>PRK10908 cell division protein FtsE; Provisional
Probab=99.62 E-value=1.3e-15 Score=162.16 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=100.4
Q ss_pred HHHHHhhhcccc---cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT---YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+.+.++++|+.. +..+..+++.+.....+ ......+..++..++... ...++.|||||++ |++||+
T Consensus 77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~lar 150 (222)
T PRK10908 77 LRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ------RVGIAR 150 (222)
T ss_pred HHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHH------HHHHHH
Confidence 345567777764 23456666654321111 111122344566666543 3456899999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
+|+.+|++|+|||||++||+.++..|..+|..+ ...|.++|+||||+.++..+||+++....|+|...
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-----NRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGG 218 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccC
Confidence 999999999999999999999999999999987 23478999999999999999999998888887554
No 135
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.62 E-value=2.8e-08 Score=129.14 Aligned_cols=207 Identities=10% Similarity=0.137 Sum_probs=116.9
Q ss_pred HHhhhhheeeccCCCCCC-CCCchhhHHhhHHhhhhh-hhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 42 KAILENVIFVHQDEANWP-LQDPSTLKKKFDDIFSAT-RYTK----------ALEVIKKLHKDQAQEIKTYKLKLENLQT 109 (1209)
Q Consensus 42 ~ail~~VifchQees~wp-l~ep~~Lkk~fDdIf~a~-ky~k----------ale~lk~~rke~~~~lK~~~~~l~~lk~ 109 (1209)
+..|.+||=-.|..+.=| +--|..+...||++-|.. +..+ -+..|..+..+....++.++.+.+.++.
T Consensus 256 rdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 256 RDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999988644 558999999999995542 1111 3333444444444444444444444433
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 000957 110 LKDAAYK---LRESISQDQEKTEALKN-------QMQELEKSIQDIDDKIHHTELTLKDLRK----MQDQISTMTARRST 175 (1209)
Q Consensus 110 ~ke~a~~---~~~~i~~~~~~~~~l~~-------~~~~l~~~i~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~ 175 (1209)
...-... +...+......+..+.. .+..+..++..+..++..+......+.. ....+..+......
T Consensus 336 yleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q 415 (1486)
T PRK04863 336 HLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQ 415 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 11122222222233333 3333322222222222222222222211 12222222333333
Q ss_pred HHHHHHHHHHHhh-h-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000957 176 LFEQQQKQYAALA-E-EIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLL 248 (1209)
Q Consensus 176 ~~~~~~~l~~~~~-~-~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~ 248 (1209)
+...+..+...-. . .-.-++++|...+.+|..++.++..++..++.++..+...+..++..++.+....|+..
T Consensus 416 ~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~ 490 (1486)
T PRK04863 416 YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVS 490 (1486)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3333333332211 0 12458899999999999999999999999999999999999999999999888888753
No 136
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.62 E-value=1e-15 Score=163.37 Aligned_cols=104 Identities=25% Similarity=0.276 Sum_probs=89.3
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
...++..++... ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..|.++|..+. ...
T Consensus 95 ~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~----~~~ 164 (230)
T TIGR01184 95 VEEHIALVGLTEAADKRPGQLSGGMKQ------RVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW----EEH 164 (230)
T ss_pred HHHHHHHcCCHHHHcCChhhCCHHHHH------HHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH----Hhc
Confidence 445666666543 2455789999999 9999999999999999999999999999999999999873 224
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
|.+||+||||+.++..+||+++++..|+|+..|+..
T Consensus 165 ~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 165 RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred CCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence 789999999999999999999999999998877543
No 137
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.62 E-value=1.1e-15 Score=165.60 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=108.3
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcc----ccchhHHHHHHHHcCCc----c--ccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEG----AGTRSYSYKVLMQTGDA----E--LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~--~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+++.++++|+.. |+.+..+++.+.....+ .........++..++.. . ...++.|||||+| |
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q------r 152 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQ------R 152 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHH------H
Confidence 3455677888764 45666777654321111 11112344556666654 2 2455889999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.++..|.++|..+. . +.++|+|||++.++..+||+++.++.|+|...|+
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK-----K-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-----h-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999872 2 3799999999999999999999999999998887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
+..++.
T Consensus 227 ~~~~~~ 232 (247)
T TIGR00972 227 TEQIFT 232 (247)
T ss_pred HHHHHh
Confidence 655543
No 138
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.2e-15 Score=170.32 Aligned_cols=146 Identities=20% Similarity=0.241 Sum_probs=112.4
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCccccch----hHHHHHHHHcCCc------cccccCCCChhhhhhhhHHH
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTR----SYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~i 1116 (1209)
..++..++++|+.+ |.++..+++.+.....+.... .....++..++.. .......|||||+|
T Consensus 159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq------ 232 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ------ 232 (329)
T ss_pred HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH------
Confidence 35567788888886 678888888753211111001 1122334444431 12445789999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++|||||+.+|++|+|||||++||+.+...|.+.|..+. .+.|+|+|||+++++..+||+++++..|+|...|
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~------~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK------KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh------cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999998872 2589999999999999999999999999999999
Q ss_pred Cccccccccc
Q 000957 1197 HQHSIIEAQE 1206 (1209)
Q Consensus 1197 ~~~s~~~~~~ 1206 (1209)
++..++..+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9888876543
No 139
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=7.3e-16 Score=170.71 Aligned_cols=142 Identities=21% Similarity=0.193 Sum_probs=105.9
Q ss_pred HHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1051 INKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1051 i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+++.++++|+.+ ++++..+++.+.....+ ......+..++..++.. . ...++.|||||+| |++|
T Consensus 88 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~q------rv~l 161 (289)
T PRK13645 88 LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKR------RVAL 161 (289)
T ss_pred HhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHH------HHHH
Confidence 344567777763 34466666654221111 11112234456666652 2 3455889999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|+||+.+|++|||||||+|||+.++..|..+|..+. ...|.+||+|||+++++..+||+++.+..|+|...|+...
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLN----KEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999873 2247899999999999999999999999999998876555
Q ss_pred cc
Q 000957 1201 II 1202 (1209)
Q Consensus 1201 ~~ 1202 (1209)
++
T Consensus 238 ~~ 239 (289)
T PRK13645 238 IF 239 (289)
T ss_pred Hh
Confidence 43
No 140
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=9.7e-16 Score=164.32 Aligned_cols=141 Identities=22% Similarity=0.304 Sum_probs=106.7
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
..++++|+.. |++ +..+++.+..... .......+..++..++... ...+..|||||++ |++||++|
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~laral 144 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQ------RVALARCL 144 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHH------HHHHHHHH
Confidence 3466777764 443 5666665421111 0111223455666677644 3455789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+.+|++|||||||+|||+.++..+.++|.++. .+.|.+|||||||+.++..+||+++....|+|...|+...+..
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVC----QERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999873 2347899999999999999999999999999998886655443
No 141
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.3e-15 Score=165.95 Aligned_cols=142 Identities=19% Similarity=0.238 Sum_probs=106.6
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+.+.++++|+.. |..+..+++.+.....+. ........++..++.. ....++.|||||+| |
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~q------r 158 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQ------R 158 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHH------H
Confidence 3455677888764 456777777553221110 0112233344444431 13345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|||||||++||+.++..|..+|..+ . .+.+||+|||+..++..+||+++.+..|+|...|+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-----K-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-----h-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 2 25799999999999999999999999999998887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
...++.
T Consensus 233 ~~~~~~ 238 (254)
T PRK14273 233 TDELFF 238 (254)
T ss_pred HHHHHh
Confidence 665543
No 142
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.61 E-value=9.2e-16 Score=163.82 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=100.4
Q ss_pred HHhhhcccc--cCC-cchhhhhhccCCccc-cchhHHHHHHHHcC-Cc--cccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1054 IIRELWQQT--YRG-QDIDYIRIHSDSEGA-GTRSYSYKVLMQTG-DA--ELEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1054 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~--~~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
.++++|+.. |++ +..+++.+....... ........++..++ .. ....+..|||||++ |++||++|+.
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~q------rv~laral~~ 149 (222)
T cd03224 76 GIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQ------MLAIARALMS 149 (222)
T ss_pred CeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHH------HHHHHHHHhc
Confidence 356677664 443 566666543221111 11112223344432 22 23445789999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
+|++|+|||||+|||+.++..|..+|.++. ..|.++|+||||..++..+||+++.+..|+|...++...
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELR-----DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 999999999999999999999999999872 257899999999999999999999999999988775443
No 143
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.4e-15 Score=165.62 Aligned_cols=140 Identities=19% Similarity=0.154 Sum_probs=105.1
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCC----cc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDS----EG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+.++++|+.. +++ +..+++.+.... .+ .........++..++... ...++.|||||++ |++
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~ 148 (255)
T PRK11231 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQ------RAF 148 (255)
T ss_pred hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHH------HHH
Confidence 44567777764 233 566666542110 11 111123344556666543 3456889999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||++++.+|++|+|||||+|||+.++..|..+|.++ ...|.+||+|||++.++..+||+++....|+|...|+..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l-----~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 223 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL-----NTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPE 223 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----HHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHH
Confidence 999999999999999999999999999999999987 234789999999999999999999999999999887655
Q ss_pred ccc
Q 000957 1200 SII 1202 (1209)
Q Consensus 1200 s~~ 1202 (1209)
.++
T Consensus 224 ~~~ 226 (255)
T PRK11231 224 EVM 226 (255)
T ss_pred Hhc
Confidence 543
No 144
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.3e-15 Score=165.38 Aligned_cols=143 Identities=17% Similarity=0.268 Sum_probs=107.9
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcc--c--cchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEG--A--GTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+.+.++++|+.. |+++..+++.+.....+ . ........++..++... ...+..|||||++ |
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q------r 154 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ------R 154 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH------H
Confidence 3445677788764 45566676654221111 0 01122344555555421 2445789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.++..|.++|.++ . .+.+||+||||..++..+||+++..+.|++...|+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-----K-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----h-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999987 2 36799999999999999999999999999999887
Q ss_pred ccccccc
Q 000957 1198 QHSIIEA 1204 (1209)
Q Consensus 1198 ~~s~~~~ 1204 (1209)
...++..
T Consensus 229 ~~~~~~~ 235 (250)
T PRK14245 229 TKKIFTN 235 (250)
T ss_pred HHHHhcC
Confidence 7666543
No 145
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=150.33 Aligned_cols=142 Identities=20% Similarity=0.184 Sum_probs=114.2
Q ss_pred HHHHHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCc--cccccCCCChhhhhhhhHHHHHHH
Q 000957 1049 EEINKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDA--ELEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
..+...|++++... |+ -+..+.+.+.+...+ ...+.....++.+++.. ..+.+..||.|..| .+-|
T Consensus 68 ~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQ------KIQf 141 (300)
T COG4152 68 QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQ------KIQF 141 (300)
T ss_pred hhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhH------HHHH
Confidence 35666788887664 54 356677766655443 22333455566666543 45667899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
.-++++.|.++|||||++||||.|++.|-+.+.++ ..+|.|||++||.|+-++.+||++..++.|..+..|+...
T Consensus 142 isaviHePeLlILDEPFSGLDPVN~elLk~~I~~l-----k~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ 216 (300)
T COG4152 142 ISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL-----KEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216 (300)
T ss_pred HHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHH-----HhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHH
Confidence 99999999999999999999999999999999988 6789999999999999999999999999999999996554
Q ss_pred c
Q 000957 1201 I 1201 (1209)
Q Consensus 1201 ~ 1201 (1209)
+
T Consensus 217 i 217 (300)
T COG4152 217 I 217 (300)
T ss_pred H
Confidence 3
No 146
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.61 E-value=9.8e-16 Score=162.96 Aligned_cols=128 Identities=21% Similarity=0.299 Sum_probs=94.4
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++++.. |++ +..+++.+.....+ .........++..++... ...++.|||||+| |++||++|
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la~al 155 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQ------RVAIARAL 155 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHH------HHHHHHHH
Confidence 3466677664 443 66677655322111 111223455666676644 3455789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
+.+|++|+|||||++||+.++..|.+.|.++. ...|.+||+|||+..++. +||+++.+..|+
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELN----KEAGTTIVVVTHDPELAE-YADRIIELRDGK 217 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HhcCCeEEEEECCHHHHh-hhcEEEEeeCCc
Confidence 99999999999999999999999999999873 224789999999999987 888777666554
No 147
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.4e-15 Score=160.53 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=98.8
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++|+.. |+ .+..+++.+.....+ .........++..++... ...+..|||||++ |++||++|
T Consensus 70 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~la~al 143 (210)
T cd03269 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQ------KVQFIAAV 143 (210)
T ss_pred ccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHH------HHHHHHHH
Confidence 3456677664 33 356666654321111 111223445566666543 3455789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
+.+|++++|||||+|||+.++..|.+.|..+ ...|.+||+|||+..++..+||+++.+..|+|...
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~-----~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIREL-----ARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-----HHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 9999999999999999999999999999987 23478999999999999999999988888887653
No 148
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.61 E-value=1.3e-15 Score=163.41 Aligned_cols=139 Identities=16% Similarity=0.159 Sum_probs=102.0
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCccccchhHHHHHHHHcCC---ccccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEGAGTRSYSYKVLMQTGD---AELEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
+.++++|+.. |++ +..+++.+...............++..+++ .....+..|||||++ |++||++|+.
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~q------rv~la~al~~ 148 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQ------QLAIARALVT 148 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHH------HHHHHHHHhc
Confidence 3456666664 333 556665443221111111122334444432 223456789999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
+|++++|||||+|||+.++..|..+|.++. ...|.++|+|||+.+++..+||+++....|+|...|+...+
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLR----AEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHH----HcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999872 22478999999999999999999999999999988865443
No 149
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.60 E-value=2.6e-13 Score=163.73 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=61.9
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccC----CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLN----CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~----~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
..|||||++ |++||++++.. |++|||||||+|||+.+...|...|..+ . .|.|||+|||++.++
T Consensus 439 ~~lSgGe~~------rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l-----~-~~~~vi~iTH~~~~~ 506 (563)
T TIGR00634 439 KVASGGELS------RVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQL-----S-ERHQVLCVTHLPQVA 506 (563)
T ss_pred hhcCHhHHH------HHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-----h-cCCEEEEEEChHHHH
Confidence 579999999 88888887763 6999999999999999999999999987 2 378999999999988
Q ss_pred HHhhhHhhhh
Q 000957 1178 QLIGQRQHAE 1187 (1209)
Q Consensus 1178 ~~~~~~~~~~ 1187 (1209)
. +||+++..
T Consensus 507 ~-~ad~~~~l 515 (563)
T TIGR00634 507 A-HADAHFKV 515 (563)
T ss_pred H-hcCeEEEE
Confidence 6 44444433
No 150
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1e-15 Score=146.07 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=97.2
Q ss_pred HHHHHHHcCCccc--cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAEL--EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~~--~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
+...+.++.+.+. ++...|||||+| |.-+|+.||++.++++||||.+|||..|.-.++..|+.+.. .-
T Consensus 116 I~~aieyl~L~~l~dryLd~LSGGQrQ------RAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~----el 185 (252)
T COG4604 116 INEAIEYLHLEDLSDRYLDELSGGQRQ------RAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD----EL 185 (252)
T ss_pred HHHHHHHhcccchHHHhHHhcccchhh------hhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHH----Hh
Confidence 4445556665553 455789999999 99999999999999999999999999999999999999853 45
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccccc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQE 1206 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~ 1206 (1209)
|.|+|+|-||.+|+..++|.+.++..|+|++.|++..+|.+..
T Consensus 186 ~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~ 228 (252)
T COG4604 186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228 (252)
T ss_pred CCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHH
Confidence 7899999999999999999999999999999999988886543
No 151
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.5e-15 Score=162.95 Aligned_cols=134 Identities=22% Similarity=0.270 Sum_probs=99.5
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccC---CccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSD---SEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++|+.+ |+ .+..+++.+... .........+..++..+|..+ ...+..|||||+| |++||++|
T Consensus 87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q------rl~la~al 160 (233)
T PRK11629 87 QKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQ------RVAIARAL 160 (233)
T ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH------HHHHHHHH
Confidence 3467777774 33 366777655211 111111234456677777644 3455789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
+.+|++|||||||+|||+.++..|.++|.++. ...|.+||+||||++++..+ ++++.+..|+|+..++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELN----RLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS 228 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEec
Confidence 99999999999999999999999999999873 23478999999999999875 4777777788876653
No 152
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=9.6e-16 Score=165.12 Aligned_cols=141 Identities=12% Similarity=0.135 Sum_probs=103.1
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCccc-cchhHHHHHHHHcC-Ccc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSEGA-GTRSYSYKVLMQTG-DAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
.+.++++|+.. |+ .+..+++.+....... ........++..++ ..+ ...++.|||||++ |++||++|
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~q------rl~la~al 152 (237)
T PRK11614 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQ------MLAIGRAL 152 (237)
T ss_pred HhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHH------HHHHHHHH
Confidence 34456666654 33 3566666542111111 11112233333332 221 3455789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+.+|++|+|||||+|||+.++..|...|.++ ...|.+||+||||.+++..+||++++...|+|...|++..+..
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-----REQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999999987 2347899999999999999999999999999999887766543
No 153
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.8e-15 Score=163.76 Aligned_cols=141 Identities=20% Similarity=0.273 Sum_probs=108.0
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc-----ccchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG-----AGTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir 1117 (1209)
..+.++++|+.. |+.+..+++.+.....+ .........++..++..+ ...+..|||||++ |
T Consensus 77 ~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q------r 150 (246)
T PRK14269 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQ------R 150 (246)
T ss_pred HhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHH------H
Confidence 345677788774 56677777755321111 111123345566666531 2345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.++..|.+.|..+ . .|.++|+|||+..++..+||++++...|+++..|+
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 224 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-----S-HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGE 224 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----h-CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999887 2 27899999999999999999999999999998887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
...++.
T Consensus 225 ~~~~~~ 230 (246)
T PRK14269 225 SKEFFE 230 (246)
T ss_pred HHHHHh
Confidence 665543
No 154
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.7e-15 Score=165.68 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=107.9
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcc-----ccchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEG-----AGTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~i 1116 (1209)
.+++.++++|+.+ |+++..+++.+.....+ .........++..++... ...++.|||||+|
T Consensus 97 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q------ 170 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ------ 170 (267)
T ss_pred HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH------
Confidence 3455677888774 55677777764321110 111123344555556532 2345789999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++||++|+.+|++|+|||||++||+.++..|..+|..+ .. +.+|||||||..++..+||++++...|+|...|
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-----~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-----RQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-----hc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999987 22 579999999999999999999999999999888
Q ss_pred Ccccccc
Q 000957 1197 HQHSIIE 1203 (1209)
Q Consensus 1197 ~~~s~~~ 1203 (1209)
+...++.
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 7665543
No 155
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.60 E-value=1.6e-15 Score=160.70 Aligned_cols=128 Identities=21% Similarity=0.224 Sum_probs=93.6
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
.+.++++++.. |+ .+..+++.+..... ..........++..++... ...+..|||||+| |++||++
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~la~a 151 (214)
T TIGR02673 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQ------RVAIARA 151 (214)
T ss_pred HhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH------HHHHHHH
Confidence 44566666654 32 45666655431111 1111223455666666543 3455789999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYY 1190 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~ 1190 (1209)
|+.+|++|+|||||+|||+.++..|.+.|.++ ...|.+||+|||+..++..+||+++++..|
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRL-----NKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----HHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 99999999999999999999999999999987 234789999999999999888887666543
No 156
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.60 E-value=1.7e-15 Score=160.75 Aligned_cols=130 Identities=21% Similarity=0.252 Sum_probs=95.4
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+.+.++++|+.. |+ .+..+++.+.....+ .........++..++... ...++.|||||+| |++||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~lar 149 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQ------RVAIAR 149 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHH------HHHHHH
Confidence 345567777764 33 366666654321111 111123344556666543 2355789999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
+|+.+|++++|||||++||+.++..|.+.|.++ ...|.++|+|||+..++..+||+++.+..|+
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~-----~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI-----NKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-----HHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999987 2347899999999999998888877665554
No 157
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=2.6e-15 Score=139.21 Aligned_cols=134 Identities=25% Similarity=0.292 Sum_probs=105.0
Q ss_pred hhcHHHHHHHHhhhcccc--cCCcchhhhhhccCCc-cccchhHHHHHHHHcCCcc--c-cccCCCChhhhhhhhHHHHH
Q 000957 1045 TMKMEEINKIIRELWQQT--YRGQDIDYIRIHSDSE-GAGTRSYSYKVLMQTGDAE--L-EMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1045 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~-~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
....+..+..+.|+.|.+ |+++..+++.+..... ....+.....++.+++..+ + ..+..|||||+| |.
T Consensus 69 ~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Q------ri 142 (223)
T COG4619 69 TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQ------RI 142 (223)
T ss_pred ccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHH------HH
Confidence 445677788888888876 8999999987754333 1223445567788876654 2 344789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
||+|.|.-.|.+|+|||||++||+.|.+.+.++|..++ ...+..+++||||.+.+.+ .+++++.|.
T Consensus 143 AliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v----~~q~vAv~WiTHd~dqa~r-----ha~k~itl~ 208 (223)
T COG4619 143 ALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV----REQNVAVLWITHDKDQAIR-----HADKVITLQ 208 (223)
T ss_pred HHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh----hhhceEEEEEecChHHHhh-----hhheEEEec
Confidence 99999999999999999999999999999999999885 3467899999999999665 455555553
No 158
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.5e-15 Score=164.07 Aligned_cols=141 Identities=19% Similarity=0.198 Sum_probs=107.0
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc----ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE----LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
...++++|+.. |+ .+..+++.+.....+ ......+..++..++... ...+..|||||+| |++||
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~q------rv~la 147 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQ------RVGVA 147 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHH------HHHHH
Confidence 34566777764 33 466777654321111 111223455666666542 3455789999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|+|||||++||+.++..|...|..+. ...|.+||||||+..++..+||+++....|+|...++...+
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~----~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ----QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999883 22478999999999999999999999999999887765544
Q ss_pred c
Q 000957 1202 I 1202 (1209)
Q Consensus 1202 ~ 1202 (1209)
.
T Consensus 224 ~ 224 (242)
T cd03295 224 L 224 (242)
T ss_pred H
Confidence 3
No 159
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.60 E-value=2.3e-15 Score=164.56 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=106.4
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCC-----------ccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDS-----------EGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl 1114 (1209)
+...++++|+.. |+ .+..+++.+.... ........+..++..++... ...++.|||||++
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q---- 159 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQ---- 159 (262)
T ss_pred HHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHH----
Confidence 344567777764 33 3566666542110 01111223455666666643 3456889999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++||++|+.+|++|+|||||+|||+.++..|..+|.++. ...|.+||+||||..++..+|+++++.+.|+|..
T Consensus 160 --rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 160 --RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN----QNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred --HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999883 2347899999999999999999999999999998
Q ss_pred cCCccc
Q 000957 1195 DDHQHS 1200 (1209)
Q Consensus 1195 ~~~~~s 1200 (1209)
.|++..
T Consensus 234 ~g~~~~ 239 (262)
T PRK09984 234 DGSSQQ 239 (262)
T ss_pred eCCHHH
Confidence 886654
No 160
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.60 E-value=2.1e-15 Score=164.00 Aligned_cols=143 Identities=19% Similarity=0.301 Sum_probs=107.8
Q ss_pred HHHHHhhhcccc--c-CCcchhhhhhcc----CCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT--Y-RGQDIDYIRIHS----DSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+.+.++++|+.. | .++..+++.+.. +............++..++... ...+..|||||++ |++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q------rv~la 158 (252)
T TIGR03005 85 MRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQ------RVAIA 158 (252)
T ss_pred HhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHH------HHHHH
Confidence 344566777764 3 356667665421 1111111223445566666543 2455789999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|+|||||++||+.++..|..+|..+. ...|.++|+|||++.++..+||+++.+..|+|...|+...+
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLA----SEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999873 22478999999999999999999999999999988876655
Q ss_pred cc
Q 000957 1202 IE 1203 (1209)
Q Consensus 1202 ~~ 1203 (1209)
+.
T Consensus 235 ~~ 236 (252)
T TIGR03005 235 FR 236 (252)
T ss_pred hc
Confidence 44
No 161
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.60 E-value=2.2e-15 Score=160.49 Aligned_cols=135 Identities=18% Similarity=0.141 Sum_probs=103.2
Q ss_pred HHHHhhhcccc--c-CCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT--Y-RGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
.+.++++|+.. | ..+..+++.+.....+ .........++..++..+ ...++.|||||++ |++||++
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la~a 147 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKR------KLSLAIA 147 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHH------HHHHHHH
Confidence 44567777764 3 3466666654321111 111123445666666543 3455889999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
|+.+|++|+|||||++||+.+...|...|..+ .. +.+||+|||++.++..+||+++....|+|...|++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 216 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEV-----RK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSP 216 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHH-----hc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999987 22 48999999999999999999999999999887754
No 162
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.5e-15 Score=166.45 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=106.9
Q ss_pred HHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.+.+.++++|+.+ +..+..+++.+.....+ ......+..++..++... ...++.|||||+| |++|
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q------rv~l 147 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQ------CVAL 147 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHH------HHHH
Confidence 3445677777763 23466677654322111 111223445566666544 3456889999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|+|||||+|||+.++..|.+.|..+ ...|.|+|+||||++.+. .||+++..+.|++...|+...
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l-----~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL-----HEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----HhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999987 235889999999999995 699999999999998887655
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
++.
T Consensus 222 ~~~ 224 (274)
T PRK13644 222 VLS 224 (274)
T ss_pred Hhc
Confidence 443
No 163
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.9e-15 Score=165.70 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=107.2
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc--c--chhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA--G--TRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+++.++++|+.. |+++..+++.+.....+. . ........+..++.. ....++.|||||+| |
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q------r 172 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQ------R 172 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHH------H
Confidence 3455678888875 556777776543211110 0 111233344444432 12456889999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.++..|..+|..+ . .+.+||+||||+.++..+||+++.+..|+|...|+
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-----K-EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-----h-cCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 2 25799999999999999999999999999999887
Q ss_pred ccccccc
Q 000957 1198 QHSIIEA 1204 (1209)
Q Consensus 1198 ~~s~~~~ 1204 (1209)
...++..
T Consensus 247 ~~~~~~~ 253 (268)
T PRK14248 247 TEQIFTS 253 (268)
T ss_pred HHHHHhC
Confidence 6655443
No 164
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=1.5e-15 Score=163.97 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=105.8
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCc----cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSE----GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
..++++|+.. |+ .+..+++.+..... ..........++..++... ...++.|||||++ |++||++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~lara 151 (241)
T PRK10895 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERR------RVEIARA 151 (241)
T ss_pred hCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHH------HHHHHHH
Confidence 3466777764 33 35666665432111 1111233455666666543 3445789999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
|+.+|++|+|||||++||+.++..|.+.|..+ ...|.++|+|||+..++..+||+++....|+|...|+...++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHL-----RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----HhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999887 2357899999999999999999999999999998887655443
No 165
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.3e-15 Score=164.61 Aligned_cols=142 Identities=19% Similarity=0.269 Sum_probs=104.0
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcc--ccchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEG--AGTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+++.++++|+.+ |+++..+++.+.....+ .........++..++.. ....+..|||||++ |++
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q------rl~ 164 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQ------RLC 164 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHH------HHH
Confidence 3445577777764 45577777765332111 11112223344444431 12345789999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcC----------
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKY---------- 1189 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~---------- 1189 (1209)
||++|+.+|++|+|||||+|||+.++..|.++|.++ . .+.+||+|||++.++..+||+++++..
T Consensus 165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-----~-~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~ 238 (269)
T PRK14259 165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-----K-KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGK 238 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-----h-cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccc
Confidence 999999999999999999999999999999999987 2 257999999999999999999988874
Q ss_pred -cEEeecCCcccccc
Q 000957 1190 -YRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1190 -~~v~~~~~~~s~~~ 1203 (1209)
|+++..|++..+..
T Consensus 239 ~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 239 VGYLVEFNETKKIFN 253 (269)
T ss_pred cceEEEeCCHHHHHh
Confidence 56788877666543
No 166
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.3e-15 Score=164.34 Aligned_cols=142 Identities=18% Similarity=0.265 Sum_probs=108.0
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcc----ccchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEG----AGTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.++..++++|+.. |+++..+++.+.....+ .........++..++..+ ...++.|||||++ |
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q------r 163 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ------R 163 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH------H
Confidence 3455678888774 55677777754322111 011122334555555421 2345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.++..|.++|.++ .. +.++|+|||+..++..+||+++.+..|+|...|+
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL-----KE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----hc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999987 22 5799999999999999999999999999999887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
+..++.
T Consensus 238 ~~~~~~ 243 (259)
T PRK14274 238 TNKMFS 243 (259)
T ss_pred HHHHhh
Confidence 666554
No 167
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.4e-15 Score=163.44 Aligned_cols=142 Identities=20% Similarity=0.290 Sum_probs=107.6
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc---c--cchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG---A--GTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir 1117 (1209)
+++.++++|+.. |+++..+++.+.....+ . ........++..++... ...++.|||||+| |
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q------r 157 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQ------R 157 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHH------H
Confidence 455677888874 56677777654311111 0 11122334555666532 2345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.+...|.+.|..+ . .|.+||+|||+..++..+||+++++..|+|...|+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-----K-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----h-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 2 36899999999999999999999999999998887
Q ss_pred ccccccc
Q 000957 1198 QHSIIEA 1204 (1209)
Q Consensus 1198 ~~s~~~~ 1204 (1209)
...+...
T Consensus 232 ~~~~~~~ 238 (251)
T PRK14244 232 TQEIFKN 238 (251)
T ss_pred HHHHhcC
Confidence 6555443
No 168
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=3.1e-15 Score=161.75 Aligned_cols=140 Identities=15% Similarity=0.190 Sum_probs=104.8
Q ss_pred HHHHHhhhcccc--cC-Ccchhhhhhc-c---CCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIH-S---DSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+...++++|+.. |+ .+..+++... . +.........+..++..+|... ...+..|||||++ |++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q------rv~la 153 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQ------RVAIA 153 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH------HHHHH
Confidence 344567777765 33 3566666421 1 1111111223444555666543 3445789999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|+|||||++||+.++..+...|..+ ...|.++|+||||..++..+||+++.+..|++...|+...+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIREL-----AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHH-----HHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999987 23478999999999999999999999999999988865543
No 169
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2e-15 Score=164.66 Aligned_cols=146 Identities=12% Similarity=0.143 Sum_probs=108.0
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcc--c--cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEG--A--GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.++..++++|+.. |+.+..+++.+.....+ . ........++..++.. ....+..|||||++ |
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q------r 158 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQ------R 158 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH------H
Confidence 3445566777653 45666666654211111 1 1112334455555532 12445789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcC-----cEE
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKY-----YRV 1192 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~-----~~v 1192 (1209)
++||++|+.+|++|+|||||++||+.++..|..+|.++. ...|.+||+||||+.++..+||+++++.. |+|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~----~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLR----LRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceE
Confidence 999999999999999999999999999999999999872 22478999999999999999999999998 999
Q ss_pred eecCCcccccccc
Q 000957 1193 AKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1193 ~~~~~~~s~~~~~ 1205 (1209)
...|++..++..+
T Consensus 235 ~~~~~~~~~~~~~ 247 (261)
T PRK14258 235 VEFGLTKKIFNSP 247 (261)
T ss_pred EEeCCHHHHHhCC
Confidence 9888777665543
No 170
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.59 E-value=1.9e-15 Score=163.51 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1085 YSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
.+..++..++... ...++.|||||++ |++||++|+.+|++|+|||||+|||+.++..|..+|.++ ..
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~LS~Ge~q------rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~ 191 (242)
T TIGR03411 123 RIEEVLETIGLADEADRLAGLLSHGQKQ------WLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-----AG 191 (242)
T ss_pred HHHHHHHHcCCchhhcCChhhCCHHHHH------HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-----hc
Confidence 3445555666543 3456789999999 999999999999999999999999999999999999987 22
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+.+||+|||+++++..+||+++....|++...|+...+.
T Consensus 192 -~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 192 -KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred -CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 579999999999999999999999999999888765544
No 171
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.59 E-value=2.8e-15 Score=163.01 Aligned_cols=141 Identities=19% Similarity=0.183 Sum_probs=106.2
Q ss_pred HHHHhhhcccc---cCCcchhhhhhccCCccc---cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1052 NKIIRELWQQT---YRGQDIDYIRIHSDSEGA---GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1052 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
.+.++++|+.. +..+..+++.+....... ........++..++... ...++.|||||+| |++||++
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~q------rv~la~a 148 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQ------RVQLARV 148 (258)
T ss_pred hhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHH------HHHHHHH
Confidence 34566777764 345677776553221111 11123344566666544 3456899999999 9999999
Q ss_pred hc------cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1124 FC------LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1124 ~~------~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
|+ .+|++|+|||||++||+.++..|..+|.++. ...|.+||+||||..++..+||+++.+..|++...|+
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 224 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLA----HERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCC
Confidence 99 5899999999999999999999999999883 1357899999999999999999999999999988876
Q ss_pred ccccc
Q 000957 1198 QHSII 1202 (1209)
Q Consensus 1198 ~~s~~ 1202 (1209)
...++
T Consensus 225 ~~~~~ 229 (258)
T PRK13548 225 PAEVL 229 (258)
T ss_pred HHHHh
Confidence 54443
No 172
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.4e-15 Score=164.42 Aligned_cols=141 Identities=21% Similarity=0.206 Sum_probs=105.8
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCc-------cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSE-------GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+.++++|+.. |++ +..+++.+..... .......+..++..++... ..+++.|||||++ |++
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~ 157 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQ------RAW 157 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHH------HHH
Confidence 44567777763 333 5666665421100 0111123445666666543 3456899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||++|+.+|++|||||||+|||+.++..|..+|.++. ...|.+||+|||++.++..+||+++.+..|+|...|+..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~----~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS----QERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 9999999999999999999999999999999999883 234789999999999999999999999999998887655
Q ss_pred ccc
Q 000957 1200 SII 1202 (1209)
Q Consensus 1200 s~~ 1202 (1209)
.+.
T Consensus 234 ~~~ 236 (265)
T PRK10575 234 ELM 236 (265)
T ss_pred Hhc
Confidence 443
No 173
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.2e-15 Score=163.76 Aligned_cols=142 Identities=16% Similarity=0.197 Sum_probs=108.1
Q ss_pred HHHHHHhhhcccc--c-CCcchhhhhhccCCcc-----ccchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHH
Q 000957 1050 EINKIIRELWQQT--Y-RGQDIDYIRIHSDSEG-----AGTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ 1115 (1209)
.++..++++|+.. | ..+..+++.+...... .........++..++... ...+..|||||+|
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q----- 153 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ----- 153 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH-----
Confidence 3455677888874 3 3567777765321111 111123345556666421 2455789999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
|++||++|+.+|++|+|||||++||+.++..|..+|..+ . .|.++|+|||++.++..+||+++.+..|+|...
T Consensus 154 -rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 154 -RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-----K-KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred -HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-----h-cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 999999999999999999999999999999999999987 2 268999999999999999999999999999988
Q ss_pred CCcccccc
Q 000957 1196 DHQHSIIE 1203 (1209)
Q Consensus 1196 ~~~~s~~~ 1203 (1209)
|+...++.
T Consensus 227 g~~~~~~~ 234 (250)
T PRK14247 227 GPTREVFT 234 (250)
T ss_pred CCHHHHHc
Confidence 87665543
No 174
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.5e-15 Score=163.91 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=107.9
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCc----cccchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSE----GAGTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+++.++++|+.. |+.+..+++.+..... ..........++..++.. ....++.|||||+| |
T Consensus 91 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q------r 164 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ------R 164 (260)
T ss_pred HHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH------H
Confidence 3455677888874 4567777765432111 111112344455566542 12345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.+...|...|.++ . .+.+||+|||+..++..+||+++....|+|...|+
T Consensus 165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-----~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-----K-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-----h-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 2 25799999999999999999999999999999887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
...++.
T Consensus 239 ~~~~~~ 244 (260)
T PRK10744 239 TDTIFT 244 (260)
T ss_pred HHHHHh
Confidence 665543
No 175
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.2e-15 Score=165.46 Aligned_cols=142 Identities=21% Similarity=0.273 Sum_probs=108.2
Q ss_pred HHHHHHhhhcccc---c-CCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT---Y-RGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.+++.++++|+.+ | ..+..+++.+.....+ .........++..++... ...++.|||||++ |++|
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q------rv~l 151 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQ------RVAI 151 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHH------HHHH
Confidence 3456678888864 2 4577777755322111 111223455666666544 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|||||||+|||+.++..|.+.|..+. ...|.|||+||||+.++. .|++++..+.|+|...|+...
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~----~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK----EQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999882 234889999999999997 599999999999998886554
Q ss_pred cc
Q 000957 1201 II 1202 (1209)
Q Consensus 1201 ~~ 1202 (1209)
++
T Consensus 227 ~~ 228 (279)
T PRK13635 227 IF 228 (279)
T ss_pred Hh
Confidence 43
No 176
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.59 E-value=2.4e-15 Score=158.96 Aligned_cols=135 Identities=21% Similarity=0.231 Sum_probs=102.9
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++|+.+ |+ .+..+++.+..... ..........++..++..+ ...+..|||||++ |++||++|
T Consensus 70 ~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~laral 143 (213)
T TIGR01277 70 RPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQ------RVALARCL 143 (213)
T ss_pred cceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHH------HHHHHHHH
Confidence 4567777775 33 36677765421111 1111233445666666644 3455789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
+.+|++++|||||++||+.++..|.++|..+. ...|.++|+|||+..++..+||+++.++.|++...|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~----~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLC----SERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999883 2247899999999999999999999999999887653
No 177
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.6e-15 Score=163.11 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=108.3
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+++.++++|+.. |+.+..+++.+.....+. ........++..++.. ....++.|||||++ |
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q------r 155 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ------R 155 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH------H
Confidence 3455677888775 456677777543211111 1112334455555532 12355789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.++..|..+|..+. . +.++|+|||+.+++..+||++++.+.|+|...|+
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~-----~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK-----K-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNK 229 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-----h-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCC
Confidence 999999999999999999999999999999999999872 2 4799999999999999999999999999999887
Q ss_pred ccccccc
Q 000957 1198 QHSIIEA 1204 (1209)
Q Consensus 1198 ~~s~~~~ 1204 (1209)
...++..
T Consensus 230 ~~~~~~~ 236 (251)
T PRK14270 230 TEKIFLE 236 (251)
T ss_pred HHHHhcC
Confidence 6665543
No 178
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.6e-15 Score=163.07 Aligned_cols=142 Identities=20% Similarity=0.161 Sum_probs=107.3
Q ss_pred HHHHHhhhcccc--c-CCcchhhhhhccCCc-------cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHH
Q 000957 1051 INKIIRELWQQT--Y-RGQDIDYIRIHSDSE-------GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
+...++++|+.. | ..+..+++.+..... .......+..++..++... ...+..|||||++ |+
T Consensus 79 ~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~q------rv 152 (265)
T PRK10253 79 VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQ------RA 152 (265)
T ss_pred HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHH------HH
Confidence 344567778775 2 245566665421100 0111123445666666544 3456889999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|+|||||+|||+.++..+..+|..+. ...|.+||+||||+.++..+||+++....|+|...|+.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~----~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 228 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN----REKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAP 228 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999883 22478999999999999999999999999999988876
Q ss_pred cccc
Q 000957 1199 HSII 1202 (1209)
Q Consensus 1199 ~s~~ 1202 (1209)
..++
T Consensus 229 ~~~~ 232 (265)
T PRK10253 229 KEIV 232 (265)
T ss_pred HHHh
Confidence 5543
No 179
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.59 E-value=3.5e-15 Score=161.19 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=105.7
Q ss_pred HHHHhhhcccc---cCCcchhhhhhccCCcc--ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1052 NKIIRELWQQT---YRGQDIDYIRIHSDSEG--AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1052 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
...++++|+.. +..+..+++.+...... .........++..++... ...++.|||||++ |++||++|
T Consensus 68 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la~al 141 (248)
T PRK03695 68 ARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQ------RVRLAAVV 141 (248)
T ss_pred hhheEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHH------HHHHHHHH
Confidence 34467777764 24566666665421111 111223455666666644 3456889999999 99999999
Q ss_pred cc-------CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1125 CL-------NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1125 ~~-------~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
+. +|++|+|||||+|||+.++..|..+|..+ ...|.+||+|||+..++..+||+++.+..|+|...|+
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~-----~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 216 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL-----CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 97 57999999999999999999999999987 2347899999999999999999999999999998876
Q ss_pred cccc
Q 000957 1198 QHSI 1201 (1209)
Q Consensus 1198 ~~s~ 1201 (1209)
...+
T Consensus 217 ~~~~ 220 (248)
T PRK03695 217 RDEV 220 (248)
T ss_pred HHHH
Confidence 5544
No 180
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.7e-15 Score=162.51 Aligned_cols=132 Identities=21% Similarity=0.200 Sum_probs=99.4
Q ss_pred Hhhhcccc--cC-CcchhhhhhccCC---ccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1055 IRELWQQT--YR-GQDIDYIRIHSDS---EGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1055 ~~~~~~~~--~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
++++|+.. |+ .+..+++.+.... ........+..++..++... ...++.|||||++ |++||++|+.
T Consensus 72 ~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q------rl~laral~~ 145 (255)
T PRK11248 72 RGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQ------RVGIARALAA 145 (255)
T ss_pred EEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHH------HHHHHHHHhc
Confidence 45666664 33 4566666542111 11111233455666666543 3456889999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc--CcEEeecC
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK--YYRVAKDD 1196 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~--~~~v~~~~ 1196 (1209)
+|++|||||||+|||+.++..|..+|..+. ...|.+||+||||++++..+||+++++. .|+|...+
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~ 213 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLW----QETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERL 213 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEe
Confidence 999999999999999999999999999873 2347899999999999999999998887 48887765
No 181
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.59 E-value=2.5e-15 Score=159.27 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=96.2
Q ss_pred HHHHHhhhcccc--cC-Ccchhhhhhcc----CCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHS----DSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+.+.++++++.. |+ .+..+++.+.. +............++..++... ...+..|||||++ |++||
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la 147 (213)
T cd03262 74 LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQ------RVAIA 147 (213)
T ss_pred HHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHH------HHHHH
Confidence 345567777765 33 46666665421 1111111223445666666544 3455889999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
++|+.+|++|+|||||+|||+.++..|..+|.++. ..|.+||+|||+..++..+||+++.++.|+
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-----~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA-----EEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-----HcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999882 347899999999999998888887766554
No 182
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.59 E-value=3.6e-15 Score=163.10 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=106.9
Q ss_pred HHHHHhhhcccc---c-C-Ccchhhhhhcc----CCccccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHH
Q 000957 1051 INKIIRELWQQT---Y-R-GQDIDYIRIHS----DSEGAGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1051 i~~~~~~~~~~~---~-~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
+.+.++++|+.. + + .+..+++.+.. ..........+..++..++.. . ...++.|||||+| |+
T Consensus 86 ~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~q------rv 159 (265)
T TIGR02769 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQ------RI 159 (265)
T ss_pred HhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH------HH
Confidence 345567777763 2 1 35555553211 111111122345566666663 2 3455789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|+|||||++||+.+...|.++|.++. ...|.+||+||||+.++..+||++++...|+|+..|+.
T Consensus 160 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~----~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQ----QAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 99999999999999999999999999999999999883 22478999999999999999999999999999988876
Q ss_pred ccccc
Q 000957 1199 HSIIE 1203 (1209)
Q Consensus 1199 ~s~~~ 1203 (1209)
..++.
T Consensus 236 ~~~~~ 240 (265)
T TIGR02769 236 AQLLS 240 (265)
T ss_pred HHHcC
Confidence 65543
No 183
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.2e-15 Score=164.79 Aligned_cols=141 Identities=19% Similarity=0.218 Sum_probs=106.6
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc--c--cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG--A--GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
+.+.++++|+.. |+++..+++.+.....+ . ........++..++.. ....++.|||||+| |+
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q------rv 191 (286)
T PRK14275 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ------RL 191 (286)
T ss_pred hhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH------HH
Confidence 445677888764 55677777765321111 0 1112233444444431 13445789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|||||||+|||+.++..|.+.|..+ . .+.+|||||||..++..+||+++++..|+|...|+.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-----~-~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-----R-GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----h-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999987 2 257999999999999999999999999999998876
Q ss_pred ccccc
Q 000957 1199 HSIIE 1203 (1209)
Q Consensus 1199 ~s~~~ 1203 (1209)
..++.
T Consensus 266 ~~~~~ 270 (286)
T PRK14275 266 AQLFT 270 (286)
T ss_pred HHHHh
Confidence 65544
No 184
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.58 E-value=3e-15 Score=159.58 Aligned_cols=129 Identities=21% Similarity=0.246 Sum_probs=93.7
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccC---CccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSD---SEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++|+.. |+ .+..+++.+... .........+..++..++... ...++.|||||+| |++||++|
T Consensus 83 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~laral 156 (221)
T TIGR02211 83 KKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQ------RVAIARAL 156 (221)
T ss_pred hcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH------HHHHHHHH
Confidence 3467777774 32 466776654211 111111223445666666543 3455889999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
+.+|++|+|||||++||+.++..|...|..+. ...|.++|+||||+.++.. ||+++++..|+|
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELN----RELNTSFLVVTHDLELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEe
Confidence 99999999999999999999999999999873 2347899999999999864 677766666655
No 185
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.6e-15 Score=162.11 Aligned_cols=141 Identities=17% Similarity=0.223 Sum_probs=105.5
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
++..++++|+.. |+.+..+++.+.....+. ........++..++.. ....++.|||||+| |+
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q------rv 155 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ------RL 155 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH------HH
Confidence 445577777764 455667766543211110 1112333344444431 12445789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|+|||||++||+.++..|.++|..+ . .+.+||+|||+..++..+||+++....|+|...++.
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 229 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-----K-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDT 229 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----h-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999987 2 267999999999999999999999999999988866
Q ss_pred ccccc
Q 000957 1199 HSIIE 1203 (1209)
Q Consensus 1199 ~s~~~ 1203 (1209)
..++.
T Consensus 230 ~~~~~ 234 (250)
T PRK14240 230 VDLFT 234 (250)
T ss_pred HHHHh
Confidence 55543
No 186
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.7e-15 Score=165.21 Aligned_cols=142 Identities=20% Similarity=0.207 Sum_probs=106.7
Q ss_pred HHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+.+.++++|+.+ +..+..+++.+.....+ .........++..+|... ...++.|||||++ |++||
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q------rv~la 156 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQ------RVAIA 156 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH------HHHHH
Confidence 455677788764 22345555544321111 111233445666667654 3456899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|+|||||+|||+.++..|...|..+. .+.|.++|+||||++++.. ||++++...|+|...|++..+
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELN----KKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999883 2348899999999999986 999999999999998876555
Q ss_pred cc
Q 000957 1202 IE 1203 (1209)
Q Consensus 1202 ~~ 1203 (1209)
+.
T Consensus 232 ~~ 233 (280)
T PRK13633 232 FK 233 (280)
T ss_pred hc
Confidence 43
No 187
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.58 E-value=3.2e-15 Score=160.76 Aligned_cols=139 Identities=21% Similarity=0.232 Sum_probs=104.6
Q ss_pred HHhhhcccc---cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1054 IIRELWQQT---YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1054 ~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
.++++|+.. +..+..+++.+.....+ ......+..++..+|... ...++.|||||+| |++||++|+
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q------rl~laral~ 148 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRR------RVEIARALL 148 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHH------HHHHHHHHh
Confidence 466777764 23566776654322111 111223445566666543 3455889999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.+|++|+|||||+|||+.++..|.++|..+. ...|.++|+|||+.+++.. ||+++.+..|++...++...+..
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALC----RDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999873 2247899999999999975 99999999999988876655543
No 188
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.58 E-value=4.7e-15 Score=160.92 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=106.8
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccC-----------CCChhhhhhhh
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRG-----------RCSAGQKVLAS 1113 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~lSgG~k~l~s 1113 (1209)
..+++.++++|+.+ |+++..+++..... . ........+..++... ...++ .|||||+|
T Consensus 73 ~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~-~---~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q--- 145 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSGTFRKNLDPYGK-W---SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ--- 145 (275)
T ss_pred HHHhhhEEEECCCcccchhhHHHHhhhccC-C---CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH---
Confidence 34566788888877 56777777743221 1 1122334444555432 12223 49999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1114 LIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1114 l~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|++||++|+.+|++|+|||||++||+.+...|...|..+ . .+.|||+|||+++++.. ||+++++..|+|+
T Consensus 146 ---rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~-----~-~~~tii~isH~~~~i~~-~dri~vl~~G~i~ 215 (275)
T cd03289 146 ---LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA-----F-ADCTVILSEHRIEAMLE-CQRFLVIEENKVR 215 (275)
T ss_pred ---HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEECCHHHHHh-CCEEEEecCCeEe
Confidence 999999999999999999999999999999999998876 2 37899999999999975 9999999999999
Q ss_pred ecCCccccccc
Q 000957 1194 KDDHQHSIIEA 1204 (1209)
Q Consensus 1194 ~~~~~~s~~~~ 1204 (1209)
..|++..++..
T Consensus 216 ~~g~~~~l~~~ 226 (275)
T cd03289 216 QYDSIQKLLNE 226 (275)
T ss_pred ecCCHHHHhhC
Confidence 99988776653
No 189
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4e-15 Score=163.07 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=104.4
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc--ccchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG--AGTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+...++++|+.. |+++..+++.+...... ..........+..++.. ....+..|||||++ |++|
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q------rv~L 172 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQ------RLCI 172 (274)
T ss_pred HhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHH------HHHH
Confidence 345567788764 44566666654321110 00111222333333421 12445789999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc---------CcE
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK---------YYR 1191 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~---------~~~ 1191 (1209)
|++|+.+|++|||||||+|||+.++..|.++|..+ .. +.+||+||||..++..+||++++++ .|+
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-----~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-----KE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----hc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999987 22 5799999999999999999999997 799
Q ss_pred EeecCCccccccc
Q 000957 1192 VAKDDHQHSIIEA 1204 (1209)
Q Consensus 1192 v~~~~~~~s~~~~ 1204 (1209)
|+..|+...++..
T Consensus 247 ~~~~g~~~~~~~~ 259 (274)
T PRK14265 247 LVEFSPTEQMFGS 259 (274)
T ss_pred EEEeCCHHHHHhC
Confidence 9998877666543
No 190
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.58 E-value=4.2e-15 Score=157.43 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=85.5
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
...++..++... ...++.|||||+| |++||++|+.+|++++|||||+|||+.++..|..+|.++. .+.
T Consensus 111 ~~~~l~~~~l~~~~~~~~~~LS~G~~q------r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~ 180 (213)
T cd03301 111 VREVAELLQIEHLLDRKPKQLSGGQRQ------RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQ----QRL 180 (213)
T ss_pred HHHHHHHcCCHHHHhCChhhCCHHHHH------HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HHc
Confidence 344556666543 3455789999999 9999999999999999999999999999999999999873 224
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|.+||+||||..++..+|++++....|+++..|
T Consensus 181 ~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 181 GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 789999999999999999999888888887643
No 191
>PRK10869 recombination and repair protein; Provisional
Probab=99.58 E-value=6.9e-13 Score=157.86 Aligned_cols=76 Identities=28% Similarity=0.409 Sum_probs=65.0
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCL----NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~----~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
..|||||++ |++||++++. +||+|||||||+|||+.+...|+..|..+ . .+.|||+|||++.++
T Consensus 429 k~lSgGe~~------Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l-----~-~~~qvi~iTH~~~~~ 496 (553)
T PRK10869 429 KVASGGELS------RIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL-----G-ESTQVMCVTHLPQVA 496 (553)
T ss_pred hhCCHHHHH------HHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-----h-cCCEEEEEecCHHHH
Confidence 369999999 8888887775 68999999999999999999999999987 2 468999999999988
Q ss_pred HHhhhHhhhhcCcEEeec
Q 000957 1178 QLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1178 ~~~~~~~~~~~~~~v~~~ 1195 (1209)
. ++++.+.|.+.
T Consensus 497 ~------~ad~~~~v~k~ 508 (553)
T PRK10869 497 G------CGHQHFFVSKE 508 (553)
T ss_pred H------hCCEEEEEecc
Confidence 5 66767777664
No 192
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.7e-15 Score=161.53 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=105.8
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc---c-cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG---A-GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
+++.++++|+.. |+.+..+++.+.....+ . ........++..++.. ....++.|||||++ |+
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q------rv 157 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQ------RV 157 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHH------HH
Confidence 345577777764 45677777764321111 1 1112223344444431 12455789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++++.+|++|||||||+|||+.++..|..+|..+ . .+.+||+||||.+++..+||+++++..|+|...|+.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-----K-DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-----h-hCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999987 2 257999999999999999999999999999998876
Q ss_pred ccccc
Q 000957 1199 HSIIE 1203 (1209)
Q Consensus 1199 ~s~~~ 1203 (1209)
..+..
T Consensus 232 ~~~~~ 236 (252)
T PRK14239 232 KQMFM 236 (252)
T ss_pred HHHHh
Confidence 65544
No 193
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.9e-15 Score=161.03 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=106.7
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcccc----chhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGAG----TRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
..++.++++|+.. |+++..+++.+.....+.. .......++..++.. ....++.|||||++ |
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q------r 155 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQ------R 155 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHH------H
Confidence 3455677888875 4567777775532111110 111222233334432 12455789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||++||+.++..|.++|..+ . .+.+||+|||+..++..+||++++.+.|++...|+
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-----K-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGR 229 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----h-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999887 2 36899999999999999999999999999998887
Q ss_pred ccccccc
Q 000957 1198 QHSIIEA 1204 (1209)
Q Consensus 1198 ~~s~~~~ 1204 (1209)
...+...
T Consensus 230 ~~~~~~~ 236 (251)
T PRK14249 230 TGEIFSR 236 (251)
T ss_pred HHHHHhC
Confidence 6655443
No 194
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.57 E-value=4.2e-15 Score=159.02 Aligned_cols=108 Identities=22% Similarity=0.208 Sum_probs=91.5
Q ss_pred HHHHHHHcCCcc-----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1086 SYKVLMQTGDAE-----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1086 ~~~~~~~~~~~~-----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
+..++..++... ...++.|||||++ |++||++|+.+|++|+|||||+|||+.++..|.+.|.++.
T Consensus 103 ~~~~l~~~~l~~~~~~~~~~~~~LS~G~~q------rv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~---- 172 (230)
T TIGR02770 103 ILEALEAVGLPDPEEVLKKYPFQLSGGMLQ------RVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR---- 172 (230)
T ss_pred HHHHHHHcCCCchHHHHhCChhhcCHHHHH------HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHH----
Confidence 445556665541 3455789999999 9999999999999999999999999999999999999873
Q ss_pred cCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1161 GQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
...|.+||+|||+.+++..+||+++.+..|+|...|++..++.
T Consensus 173 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 2247899999999999999999999999999999887665543
No 195
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.57 E-value=5.1e-07 Score=115.05 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=23.7
Q ss_pred cccccchhhhhhhhh-cCCHHhhhhheeeccCCCCCCCCCchh----hHHhhHHhhhh
Q 000957 24 SYRCADMDREVPALM-GVSKAILENVIFVHQDEANWPLQDPST----LKKKFDDIFSA 76 (1209)
Q Consensus 24 s~k~~~~d~~~~~~l-gvs~ail~~VifchQees~wpl~ep~~----Lkk~fDdIf~a 76 (1209)
..-|.|++++|..+| -..-...-.||-..+. +.-|.++... -.--|=.|-+.
T Consensus 481 ~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~-~~~~es~S~~iIse~Lv~F~nI~eL 537 (1822)
T KOG4674|consen 481 EQQISDLSRQVNVLLLELDELRKGSKITVSSD-STENESDSEEIISERLVEFSNINEL 537 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-ccccCccHHHHHHHHHHHhccHHHH
Confidence 444778888875443 1222222222222222 2455554332 23456666665
No 196
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.7e-15 Score=164.06 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=109.4
Q ss_pred HHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.+...++++|+.+ +..+..+++.+.....+ ......+..++..++... ...+..|||||++ |++|
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~q------rv~l 154 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQ------RVAI 154 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHH------HHHH
Confidence 3456678888764 35677777754321111 111123445666677654 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|||||||+|||+.++..|.+.|..+. ...|.+||+|||++.++. +||++++++.|++...|+...
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK----KKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999873 224789999999999995 799999999999999887665
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
++.
T Consensus 230 ~~~ 232 (282)
T PRK13640 230 IFS 232 (282)
T ss_pred Hhc
Confidence 543
No 197
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.57 E-value=3.1e-15 Score=183.11 Aligned_cols=139 Identities=18% Similarity=0.141 Sum_probs=108.5
Q ss_pred HHhhhcccc----cC-Ccchhhhhhcc----CCccccchhHHHHHHHHcCCcc-----ccccCCCChhhhhhhhHHHHHH
Q 000957 1054 IIRELWQQT----YR-GQDIDYIRIHS----DSEGAGTRSYSYKVLMQTGDAE-----LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1054 ~~~~~~~~~----~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.++++||.+ ++ .+..+++.+.. +.........+..++..+|..+ ..+++.|||||+| |++
T Consensus 105 ~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~Q------Rv~ 178 (623)
T PRK10261 105 DMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQ------RVM 178 (623)
T ss_pred CEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHH------HHH
Confidence 467888864 33 36667665422 1111112234556677777642 3567899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||+||+.+|++|||||||++||+.++..+..+|+++. ...|.+||+||||+.++..+||++++++.|+|+..|+..
T Consensus 179 iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~----~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~ 254 (623)
T PRK10261 179 IAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ----KEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVE 254 (623)
T ss_pred HHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHH
Confidence 9999999999999999999999999999999999883 234789999999999999999999999999999887665
Q ss_pred ccc
Q 000957 1200 SII 1202 (1209)
Q Consensus 1200 s~~ 1202 (1209)
.++
T Consensus 255 ~~~ 257 (623)
T PRK10261 255 QIF 257 (623)
T ss_pred Hhh
Confidence 554
No 198
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.7e-15 Score=162.43 Aligned_cols=143 Identities=18% Similarity=0.243 Sum_probs=105.7
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcc--cc--chhHHHHHHHHcCC------ccccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEG--AG--TRSYSYKVLMQTGD------AELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~------~~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+.+.++++|+.. |+++..+++.+...... .. .......++..++. .....+..|||||++ |
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q------r 175 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ------R 175 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH------H
Confidence 3456678888875 45577777754221111 00 01112222323221 112455789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.++..+..+|..+ .. +.+||+||||+.++..+||+++.++.|++...|+
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL-----KK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-----Hc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 22 5799999999999999999999999999999887
Q ss_pred ccccccc
Q 000957 1198 QHSIIEA 1204 (1209)
Q Consensus 1198 ~~s~~~~ 1204 (1209)
...++..
T Consensus 250 ~~~~~~~ 256 (271)
T PRK14238 250 TDKIFSN 256 (271)
T ss_pred HHHHHcC
Confidence 6665543
No 199
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.57 E-value=6.1e-15 Score=160.67 Aligned_cols=139 Identities=16% Similarity=0.117 Sum_probs=105.4
Q ss_pred HHHHhhhcccc---cCCcchhhhhhccCC----cc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1052 NKIIRELWQQT---YRGQDIDYIRIHSDS----EG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1052 ~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+.++++++.+ +..+..+++.+.... .. .........++..++..+ ...++.|||||++ |++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~ 147 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQ------RVH 147 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH------HHH
Confidence 34456677764 235667766542110 00 111123445666666544 3456789999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||++|+.+|++++|||||+|||+.++..|...|..+ ...|.+||+|||++.++..+||+++++..|+|...|+..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL-----AATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-----HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHH
Confidence 999999999999999999999999999999999987 234789999999999999999999999999999888654
Q ss_pred cc
Q 000957 1200 SI 1201 (1209)
Q Consensus 1200 s~ 1201 (1209)
.+
T Consensus 223 ~~ 224 (256)
T TIGR03873 223 EV 224 (256)
T ss_pred Hh
Confidence 43
No 200
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.2e-15 Score=161.86 Aligned_cols=140 Identities=17% Similarity=0.232 Sum_probs=103.8
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCcc-----ccchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSEG-----AGTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
+..++++|+.. |++ +..+++.+...... .........++..++.. ....+..|||||++ |
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q------r 157 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ------R 157 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH------H
Confidence 34566777764 333 66666654221111 01111233444555532 12355789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||++||+.++..+...|..+ . .+.+||+|||++.++..+||+++++..|+|...|+
T Consensus 158 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-----K-KEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-----h-hCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 2 25799999999999999999999999999999887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
...+..
T Consensus 232 ~~~~~~ 237 (253)
T PRK14267 232 TRKVFE 237 (253)
T ss_pred HHHHHh
Confidence 665543
No 201
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.57 E-value=4.3e-15 Score=179.36 Aligned_cols=142 Identities=16% Similarity=0.205 Sum_probs=108.6
Q ss_pred HHHHHhhhccc---ccC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQ---TYR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+++.++++||. +|+ .+..+++.+.....+ ......+..++..++... ...++.|||||+| |++||
T Consensus 107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q------rv~iA 180 (520)
T TIGR03269 107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQ------RVVLA 180 (520)
T ss_pred hhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHH------HHHHH
Confidence 34557888885 233 356666654221111 111234556677777654 3456899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|+|||||++||+.++..|.++|.++. ...|.+||+||||..++..+||+++.+..|+|...|+...+
T Consensus 181 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 256 (520)
T TIGR03269 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAV----KASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256 (520)
T ss_pred HHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHH
Confidence 99999999999999999999999999999999883 23478999999999999999999999999999887765444
Q ss_pred c
Q 000957 1202 I 1202 (1209)
Q Consensus 1202 ~ 1202 (1209)
+
T Consensus 257 ~ 257 (520)
T TIGR03269 257 V 257 (520)
T ss_pred H
Confidence 3
No 202
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=6.7e-15 Score=160.97 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=108.1
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+++.++++|+.. |+++..+++.+.....+. ........++..++.. ....++.|||||++ |
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q------r 171 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQ------R 171 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHH------H
Confidence 3455678888864 566778877653211111 1112233344455442 13456789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||++||+.++..+..+|..+ . .+.+||+|||+..++..+||+++.+..|+|...|+
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-----K-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----h-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 2 25799999999999999999999999999999887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
...+..
T Consensus 246 ~~~~~~ 251 (267)
T PRK14237 246 TRNIFT 251 (267)
T ss_pred HHHHhc
Confidence 665544
No 203
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=6.7e-15 Score=160.67 Aligned_cols=141 Identities=18% Similarity=0.268 Sum_probs=103.2
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc--ccchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG--AGTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+++.++++|+.. |+.+..+++.+.....+ .........++...+.. ....+..|||||++ |++|
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q------rv~l 162 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQ------RLCI 162 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHH------HHHH
Confidence 445577777764 44566666654321111 01111222333333331 12345789999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc---------CcE
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK---------YYR 1191 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~---------~~~ 1191 (1209)
|++|+.+|++|||||||++||+.++..|.++|..+. . +.+||+|||+..++..+||++++++ .|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-----~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK-----E-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-----c-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCce
Confidence 999999999999999999999999999999999872 2 4799999999999999999999887 799
Q ss_pred EeecCCcccccc
Q 000957 1192 VAKDDHQHSIIE 1203 (1209)
Q Consensus 1192 v~~~~~~~s~~~ 1203 (1209)
|+..|+...++.
T Consensus 237 i~~~~~~~~~~~ 248 (264)
T PRK14243 237 LVEFDRTEKIFN 248 (264)
T ss_pred EEEeCCHHHHHh
Confidence 988887666554
No 204
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.56 E-value=7.1e-15 Score=156.14 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=83.0
Q ss_pred HHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCc
Q 000957 1088 KVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENF 1165 (1209)
Q Consensus 1088 ~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~ 1165 (1209)
.++..++..+ ...++.|||||++ |++||++|+.+|+++||||||++||+.++..|.+.|.++. ..|.
T Consensus 125 ~~l~~~~l~~~~~~~~~~LSgG~~q------rv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~-----~~~~ 193 (224)
T cd03220 125 EIIEFSELGDFIDLPVKTYSSGMKA------RLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL-----KQGK 193 (224)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHH------HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-----hCCC
Confidence 3444445433 3445789999999 9999999999999999999999999999999999999872 3478
Q ss_pred EEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1166 QLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1166 ~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
+||+|||+..++..+||++++...|+|...|
T Consensus 194 tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 194 TVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999888888886543
No 205
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.56 E-value=8.6e-15 Score=155.97 Aligned_cols=82 Identities=30% Similarity=0.340 Sum_probs=73.3
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
++.|||||++ |++||++|+.+|++|+|||||+|||+.++..|.++|.++ .. +.+||+||||..++ .+
T Consensus 138 ~~~LSgG~~q------rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~-~~tii~~sH~~~~~-~~ 204 (220)
T cd03245 138 GRGLSGGQRQ------AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-----LG-DKTLIIITHRPSLL-DL 204 (220)
T ss_pred CccCCHHHHH------HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-----cC-CCEEEEEeCCHHHH-Hh
Confidence 3689999999 999999999999999999999999999999999999987 22 37999999999987 68
Q ss_pred hhHhhhhcCcEEeec
Q 000957 1181 GQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~~~ 1195 (1209)
||+++..+.|+|...
T Consensus 205 ~d~v~~l~~g~i~~~ 219 (220)
T cd03245 205 VDRIIVMDSGRIVAD 219 (220)
T ss_pred CCEEEEEeCCeEeec
Confidence 998888888877643
No 206
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=5.7e-15 Score=160.64 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=105.8
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCc----c--ccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDA----E--LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~--~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+++.++++|+.. |+++..+++.+.....+. ........++..++.. . ...+..|||||++ |
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q------r 155 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ------R 155 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH------H
Confidence 3455567777764 456777776543211110 0112233444455542 1 2345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||++||+.+...|...|..+ . .+.+||+|||+..++..+||+++.+..|+|...|+
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-----K-HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-----H-cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 2 25799999999999999999999999999998887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
...++.
T Consensus 230 ~~~~~~ 235 (251)
T PRK14251 230 TEEMFI 235 (251)
T ss_pred HHHHHh
Confidence 665543
No 207
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.56 E-value=8.1e-15 Score=158.06 Aligned_cols=92 Identities=23% Similarity=0.314 Sum_probs=82.7
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
.+..|||||+| |++||++|+.+|++|+|||||++||+.++..|.+.|..+ . .|.+||+||||+.++.
T Consensus 135 ~~~~LSgG~~q------rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~sH~~~~~~- 201 (237)
T cd03252 135 QGAGLSGGQRQ------RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-----C-AGRTVIIIAHRLSTVK- 201 (237)
T ss_pred CCCcCCHHHHH------HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCCHHHHH-
Confidence 45789999999 999999999999999999999999999999999999987 3 3789999999999996
Q ss_pred hhhHhhhhcCcEEeecCCccccccc
Q 000957 1180 IGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
.||+++..+.|+|+..|+...++..
T Consensus 202 ~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 202 NADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 5999999999999998876665543
No 208
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.56 E-value=4.7e-15 Score=179.26 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=108.6
Q ss_pred HHHhhhcccc----cC-CcchhhhhhccC-----CccccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHH
Q 000957 1053 KIIRELWQQT----YR-GQDIDYIRIHSD-----SEGAGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1053 ~~~~~~~~~~----~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
..++++||.+ |+ .+..+++.+... .........+..++..++.. . ...++.|||||+| |++
T Consensus 362 ~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q------rv~ 435 (529)
T PRK15134 362 HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ------RIA 435 (529)
T ss_pred hceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHH------HHH
Confidence 4467777763 33 356666654211 01111123345667777764 2 3466899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||++|+.+|++|||||||+|||+.++..|..+|.++. ...|.+||+||||+.++..+||++++++.|+|...|+..
T Consensus 436 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 511 (529)
T PRK15134 436 IARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQ----QKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511 (529)
T ss_pred HHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHH----HhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999883 224789999999999999999999999999999888766
Q ss_pred ccccc
Q 000957 1200 SIIEA 1204 (1209)
Q Consensus 1200 s~~~~ 1204 (1209)
.++..
T Consensus 512 ~~~~~ 516 (529)
T PRK15134 512 RVFAA 516 (529)
T ss_pred HHhcC
Confidence 66543
No 209
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.56 E-value=7e-15 Score=160.38 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=91.5
Q ss_pred HHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1086 SYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1086 ~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
...++..++... ...+..|||||+| |++||++|+.+|++|+|||||++||+.+...|.+.|..+. ..
T Consensus 131 ~~~~l~~~~l~~~~~~~~~~~LS~Gq~q------rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~ 200 (258)
T PRK11701 131 AGDWLERVEIDAARIDDLPTTFSGGMQQ------RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLV----RE 200 (258)
T ss_pred HHHHHHHcCCChhHHhCCCccCCHHHHH------HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----Hh
Confidence 344555666532 3456889999999 9999999999999999999999999999999999999873 22
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.|.+||+|||+..++..+||+++....|+++..|+...++.
T Consensus 201 ~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 241 (258)
T PRK11701 201 LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241 (258)
T ss_pred cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 47899999999999999999999999999998887665543
No 210
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=6.5e-15 Score=160.14 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=107.0
Q ss_pred HHHHHHhhhcccc--cC-CcchhhhhhccCCcc----ccchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHH
Q 000957 1050 EINKIIRELWQQT--YR-GQDIDYIRIHSDSEG----AGTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~i 1116 (1209)
.+.+.++++|+.. |+ .+..+++.+.....+ .........++..++... ...++.|||||++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q------ 155 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ------ 155 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH------
Confidence 3455677888874 44 466776654221111 111123344555555421 2346789999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++||++|+.+|++|+|||||+|||+.++..|..+|..+. . +.+||+|||++.++..+||+++++..|+|...|
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-----~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-----E-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-----h-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999882 2 479999999999999999999999999999988
Q ss_pred Ccccccc
Q 000957 1197 HQHSIIE 1203 (1209)
Q Consensus 1197 ~~~s~~~ 1203 (1209)
+...++.
T Consensus 230 ~~~~~~~ 236 (252)
T PRK14256 230 ETKKIFT 236 (252)
T ss_pred CHHHHHh
Confidence 7665544
No 211
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=6e-15 Score=162.15 Aligned_cols=143 Identities=22% Similarity=0.264 Sum_probs=107.7
Q ss_pred HHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.+...++++|+.+ +..+..+++.+.....+ ......+..++..++... ...+..|||||++ |++|
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~l 151 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQ------RVAV 151 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHH------HHHH
Confidence 4456677888864 24567777754221111 111123344555556543 3456889999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|||||||++||+.++..|.++|..+. ...|.|+|+|||++.++. .||+++..+.|+++..|+...
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIK----EKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999883 224789999999999997 699999999999998887655
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
++.
T Consensus 227 ~~~ 229 (277)
T PRK13642 227 LFA 229 (277)
T ss_pred Hhc
Confidence 543
No 212
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.56 E-value=6.4e-15 Score=167.93 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=89.3
Q ss_pred HHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCc
Q 000957 1088 KVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENF 1165 (1209)
Q Consensus 1088 ~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~ 1165 (1209)
.++..++... ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..|...|.++ ...|.
T Consensus 126 elLe~lgL~~~ld~~~~~LSGGQrQ------RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el-----~~~G~ 194 (549)
T PRK13545 126 EIIEFADIGKFIYQPVKTYSSGMKS------RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF-----KEQGK 194 (549)
T ss_pred HHHHHcCChhHhhCCcccCCHHHHH------HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH-----HhCCC
Confidence 3455555433 2455789999999 999999999999999999999999999999999999987 33578
Q ss_pred EEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1166 QLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1166 ~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+||+||||+.++..+||+++....|+|...|++..++
T Consensus 195 TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~ 231 (549)
T PRK13545 195 TIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVV 231 (549)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999888665443
No 213
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=8e-15 Score=159.27 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=105.0
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+.+.++++|+.. |+++..+++.+.....+. ........++..++.. ....++.|||||++ |
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q------r 153 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQ------R 153 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHH------H
Confidence 3455677888775 456677776543211110 0111222334444431 12345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.++..|..+|.++ .. +.+||+|||++.++..+||++++...|+|...|+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~ 227 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-----KK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDD 227 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----hc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 22 4799999999999999999999999999999886
Q ss_pred ccccc
Q 000957 1198 QHSII 1202 (1209)
Q Consensus 1198 ~~s~~ 1202 (1209)
...+.
T Consensus 228 ~~~~~ 232 (249)
T PRK14253 228 TQVIF 232 (249)
T ss_pred HHHHH
Confidence 65544
No 214
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.56 E-value=7.2e-15 Score=157.39 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=95.0
Q ss_pred HHhhhcccc--cC-Ccchhhhhhcc---CCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1054 IIRELWQQT--YR-GQDIDYIRIHS---DSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1054 ~~~~~~~~~--~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
.++++|+.+ |+ .+..+++.+.. +.........+..++..++..+ ...+..|||||+| |++||++|+
T Consensus 89 ~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q------rl~la~al~ 162 (228)
T PRK10584 89 HVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQ------RVALARAFN 162 (228)
T ss_pred eEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHH------HHHHHHHHh
Confidence 456677764 23 35666665421 1111112234455666666544 3456889999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
.+|++|+|||||+|||+.++..|...|.++. ...|.+||+||||..++.. ||+++....|+|.
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLN----REHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 9999999999999999999999999999873 2347899999999999864 8887777777764
No 215
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=7.1e-15 Score=160.29 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=106.1
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCc---c-ccchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSE---G-AGTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+...++++|+.. |+.+..+++.+..... . .........++..++.. ....+..|||||++ |
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q------r 158 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ------R 158 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH------H
Confidence 3445677788774 5667777765421111 1 11112334455555542 12445789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc-----CcEE
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK-----YYRV 1192 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~-----~~~v 1192 (1209)
++||++|+.+|++|+|||||+|||+.+...|..+|..+ .. +.+||+|||+++++..+||++++++ .|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-----RS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-----hc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999987 22 4799999999999999999998887 4999
Q ss_pred eecCCcccccc
Q 000957 1193 AKDDHQHSIIE 1203 (1209)
Q Consensus 1193 ~~~~~~~s~~~ 1203 (1209)
+..|++..++.
T Consensus 233 ~~~~~~~~~~~ 243 (259)
T PRK14260 233 VEFGVTTQIFS 243 (259)
T ss_pred EEeCCHHHHhc
Confidence 98887766543
No 216
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=5.8e-15 Score=160.69 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=104.9
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc--c-c-chhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG--A-G-TRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
++..++++|+.. |+++..+++.+.....+ . . ........+..++.. ....++.|||||++ |+
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~q------rv 157 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQ------RV 157 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHH------HH
Confidence 344567777764 45667777654321111 0 0 011222233333321 12345789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|+|||||++||+.+...|..+|..+. . +.++|+|||++.++..+||+++....|+|...|++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR-----D-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADT 231 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH-----h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999872 2 47999999999999999999999999999998877
Q ss_pred cccccc
Q 000957 1199 HSIIEA 1204 (1209)
Q Consensus 1199 ~s~~~~ 1204 (1209)
..++..
T Consensus 232 ~~~~~~ 237 (252)
T PRK14255 232 KQMFLN 237 (252)
T ss_pred HHHhcC
Confidence 665543
No 217
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=8.3e-15 Score=159.27 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=104.8
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
+...++++|+.. |+.+..+++.+.....+. .........+..++.. ....+..|||||++ |+
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q------r~ 155 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQ------RL 155 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHH------HH
Confidence 345677777764 456677777543221111 0111223344444432 12345789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|+|||||+|||+.++..|.+.|..+ .+ +.++|+|||+.+++..+||+++....|++...|+.
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL-----SE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPT 229 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-----hc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999987 22 57999999999999999999999999999988866
Q ss_pred cccc
Q 000957 1199 HSII 1202 (1209)
Q Consensus 1199 ~s~~ 1202 (1209)
..+.
T Consensus 230 ~~~~ 233 (250)
T PRK14262 230 REIV 233 (250)
T ss_pred HHHH
Confidence 5544
No 218
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=7.8e-15 Score=159.50 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=105.7
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc--ccchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG--AGTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+.+.++++|+.. |..+..+++.+.....+ .........++..++... ...++.|||||++ |++|
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q------rv~l 160 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQ------RLCI 160 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH------HHHH
Confidence 345567777764 45667777755322111 111123344455555321 1234689999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc--------CcEE
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK--------YYRV 1192 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~--------~~~v 1192 (1209)
|+||+.+|++|+|||||+|||+.++..|.++|.++ . .+.++|+|||++.++..+||+++++. .|+|
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-----~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-----K-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----h-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceE
Confidence 99999999999999999999999999999999987 2 35799999999999999999998884 7999
Q ss_pred eecCCccccccc
Q 000957 1193 AKDDHQHSIIEA 1204 (1209)
Q Consensus 1193 ~~~~~~~s~~~~ 1204 (1209)
...|+...++..
T Consensus 235 ~~~g~~~~~~~~ 246 (261)
T PRK14263 235 VEMGPTAQIFQN 246 (261)
T ss_pred EEeCCHHHHHhC
Confidence 988877666543
No 219
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.56 E-value=6.9e-15 Score=150.57 Aligned_cols=97 Identities=27% Similarity=0.290 Sum_probs=81.5
Q ss_pred HHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcE
Q 000957 1089 VLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQ 1166 (1209)
Q Consensus 1089 ~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~ 1166 (1209)
++..++..+ ...+..|||||++ |++||++|+.+|++++|||||++||+.++..|...|..+. .+.|.+
T Consensus 81 ~l~~~gl~~~~~~~~~~LS~G~~q------rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~----~~~~~t 150 (180)
T cd03214 81 ALELLGLAHLADRPFNELSGGERQ------RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA----RERGKT 150 (180)
T ss_pred HHHHcCCHhHhcCCcccCCHHHHH------HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH----HhcCCE
Confidence 344455443 2345789999999 9999999999999999999999999999999999999872 222789
Q ss_pred EEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1167 LIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1167 ~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
+|+|||+..++..+||+++....|+|...
T Consensus 151 iii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 151 VVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999988888887643
No 220
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=6.5e-15 Score=160.66 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=104.1
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCCcc----ccchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDSEG----AGTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
+.+.++++|+.. |+ .+..+++.+.....+ ......+..++..++.. ....++.|||||++ |
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q------r 156 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ------R 156 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH------H
Confidence 344567777764 33 466776654321111 11112334455555542 13455789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc------CcE
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK------YYR 1191 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~------~~~ 1191 (1209)
++||++|+.+|++|+|||||+|||+.++..|..+|.++ . .+.+||+|||++.++..+||++++.. .|+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-----K-QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-----h-cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999987 2 24799999999999999999988886 799
Q ss_pred EeecCCcccccc
Q 000957 1192 VAKDDHQHSIIE 1203 (1209)
Q Consensus 1192 v~~~~~~~s~~~ 1203 (1209)
|...|+...++.
T Consensus 231 i~~~~~~~~~~~ 242 (258)
T PRK14241 231 LVEIDDTEKIFS 242 (258)
T ss_pred EEecCCHHHHHh
Confidence 998887665544
No 221
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=6e-15 Score=161.74 Aligned_cols=143 Identities=22% Similarity=0.243 Sum_probs=106.2
Q ss_pred HHHHHHhhhcccc---c-CCcchhhhhhccCCc--c-ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT---Y-RGQDIDYIRIHSDSE--G-AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~---~-~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.+++.++++|+.. | ..+..+++.+..... . .........++..++... ...+..|||||++ |++|
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~l 153 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQ------RVAI 153 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHH------HHHH
Confidence 3445567777763 3 347777775532111 1 111123445666666543 3455899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|+|||||+|||+.++..|..+|.++. ...+.++|+|||+..++. +||+++.+..|+|...|+...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLR----KTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999873 223589999999999996 799999999999988876555
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
+..
T Consensus 229 ~~~ 231 (271)
T PRK13632 229 ILN 231 (271)
T ss_pred Hhc
Confidence 443
No 222
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=4.8e-15 Score=158.83 Aligned_cols=140 Identities=18% Similarity=0.203 Sum_probs=104.9
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
..++++++.. |.+ +..+++.+.....+ .........++..++..+ ...+..|||||++ |++||++|
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q------rl~laral 145 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQ------RVAIARAL 145 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH------HHHHHHHH
Confidence 3456666664 333 56666654221111 111223445666666643 3445789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+.+|++++|||||+|||+.++..|.++|.++. ...|.|+|+|||+..++..+||+++....|++...|+.....
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~----~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ----KELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999999999999873 223789999999999999999999999999999888654443
No 223
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.56 E-value=7.3e-15 Score=156.08 Aligned_cols=105 Identities=27% Similarity=0.290 Sum_probs=89.0
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
+..++..++... ...++.|||||++ |++||++|+.+|+++||||||++||+.++..|.+.|.++ ...
T Consensus 94 ~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~-----~~~ 162 (223)
T TIGR03771 94 VRDALRRVGLTELADRPVGELSGGQRQ------RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL-----AGA 162 (223)
T ss_pred HHHHHHHhCCchhhcCChhhCCHHHHH------HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----HHc
Confidence 444566666543 3456789999999 999999999999999999999999999999999999987 234
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
|.+||+||||++++..+||++++. .|+|...|+...+.
T Consensus 163 ~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 163 GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 789999999999999999998887 69998887655543
No 224
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=6.9e-15 Score=161.82 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=103.5
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc--ccchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG--AGTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+.+.++++|+.. |+++..+++.+.....+ ......+..++..++.. ....++.|||||+| |++|
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q------rv~L 191 (285)
T PRK14254 118 LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ------RLCI 191 (285)
T ss_pred hhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH------HHHH
Confidence 345567777764 45566777654321111 11112334455555542 12455799999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhh-hhcCcEEeecCCcc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQH-AEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 1199 (1209)
|++|+.+|++|||||||+|||+.++..|..+|..+. . +.+||+||||..++..+||+++ ++..|+|...|+..
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~-----~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-----E-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-----c-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 999999999999999999999999999999999882 2 3699999999999999999964 56789998888665
Q ss_pred ccc
Q 000957 1200 SII 1202 (1209)
Q Consensus 1200 s~~ 1202 (1209)
.++
T Consensus 266 ~~~ 268 (285)
T PRK14254 266 KIF 268 (285)
T ss_pred HHH
Confidence 544
No 225
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.1e-14 Score=159.54 Aligned_cols=142 Identities=22% Similarity=0.285 Sum_probs=106.1
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCcc--c--cchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEG--A--GTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
++..++++|+.+ |+.+..+++.+...... . ........++..++... ...+..|||||++ |+
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~q------rl 172 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQ------LL 172 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHH------HH
Confidence 455677787764 55677777654321111 1 11112233444555431 2345789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|+|||||++||+.++..|...|..+ .. +.+||+|||+..++..+||+++.+..|+|...|+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-----~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~ 246 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL-----AD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----hc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999987 22 47999999999999999999999999999988876
Q ss_pred cccccc
Q 000957 1199 HSIIEA 1204 (1209)
Q Consensus 1199 ~s~~~~ 1204 (1209)
..++..
T Consensus 247 ~~~~~~ 252 (276)
T PRK14271 247 EQLFSS 252 (276)
T ss_pred HHHHhC
Confidence 665543
No 226
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9.1e-15 Score=160.41 Aligned_cols=142 Identities=15% Similarity=0.218 Sum_probs=106.6
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.++..++++|+.. |+++..+++.+.....+. ........++..++... ...+..|||||++ |
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q------r 176 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ------R 176 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH------H
Confidence 3455677787764 556777777543211110 01122334444545421 2345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|||||||+|||+.++..|.++|..+ .. +.++|+|||+.+++..+||++++++.|+|...|+
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-----~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-----KS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----Hh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999987 22 5799999999999999999999999999998887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
..+++.
T Consensus 251 ~~~~~~ 256 (272)
T PRK14236 251 TDTLFT 256 (272)
T ss_pred HHHHhc
Confidence 665543
No 227
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.55 E-value=1.1e-14 Score=158.72 Aligned_cols=140 Identities=17% Similarity=0.184 Sum_probs=104.6
Q ss_pred HHHHhhhcccc---cCCcchhhhhhccCCc-------cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1052 NKIIRELWQQT---YRGQDIDYIRIHSDSE-------GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1052 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+.++++|+.. +..+..+++.+..... ..........++..++... ...++.|||||++ |++
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~ 155 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELA------RVQ 155 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH------HHH
Confidence 34456677653 3456667665432110 0111123344555666543 3456899999999 999
Q ss_pred HHHHhc---------cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCc
Q 000957 1120 LAETFC---------LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYY 1190 (1209)
Q Consensus 1120 la~~~~---------~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~ 1190 (1209)
||++|+ .+|++|+|||||++||+.++..|.+.|..+. ...|.+||+||||..++..+||+++....|
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLA----RDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999 4999999999999999999999999999873 223789999999999999999999999999
Q ss_pred EEeecCCcccc
Q 000957 1191 RVAKDDHQHSI 1201 (1209)
Q Consensus 1191 ~v~~~~~~~s~ 1201 (1209)
+|...|+...+
T Consensus 232 ~i~~~g~~~~~ 242 (272)
T PRK13547 232 AIVAHGAPADV 242 (272)
T ss_pred eEEEecCHHHH
Confidence 99988865544
No 228
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=7.5e-15 Score=159.96 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=103.6
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCCcc--c--cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDSEG--A--GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~ir 1117 (1209)
+...++++|+.. |+ .+..+++.+.....+ . ........++..++.. ....++.|||||++ |
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q------r 156 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQ------R 156 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHH------H
Confidence 344567777775 34 366777654321111 0 0111222333333321 13445789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||++||+.++..|...|..+ . .+.++|||||+..++..+||+++.+..|+|...|+
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-----K-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----h-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 2 25899999999999999999999999999998887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
...+..
T Consensus 231 ~~~~~~ 236 (252)
T PRK14272 231 TDQLFT 236 (252)
T ss_pred HHHHHh
Confidence 655543
No 229
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.55 E-value=7.1e-15 Score=147.36 Aligned_cols=81 Identities=26% Similarity=0.347 Sum_probs=74.0
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhh
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQ 1182 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~ 1182 (1209)
+|||||++ |++||++|+.+|++|+|||||++||+.++..|..+|.++ ...|.++|+||||..++..+||
T Consensus 82 qLS~G~~q------rl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 82 QLSVGERQ------MVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL-----RAQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred ecCHHHHH------HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCCHHHHHHhCC
Confidence 49999999 999999999999999999999999999999999999987 2347899999999999999999
Q ss_pred HhhhhcCcEEee
Q 000957 1183 RQHAEKYYRVAK 1194 (1209)
Q Consensus 1183 ~~~~~~~~~v~~ 1194 (1209)
+++....|+|..
T Consensus 151 ~~~~l~~g~i~~ 162 (163)
T cd03216 151 RVTVLRDGRVVG 162 (163)
T ss_pred EEEEEECCEEEe
Confidence 988888877753
No 230
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=6.6e-15 Score=160.71 Aligned_cols=107 Identities=22% Similarity=0.284 Sum_probs=90.5
Q ss_pred HHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1087 YKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1087 ~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
..++..+|... ...++.|||||++ |++||++|+.+|++|||||||+|||+.++..|.++|..+. ...|
T Consensus 135 ~~~l~~~gl~~~~~~~~~~LS~G~~q------rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~----~~~~ 204 (255)
T PRK11300 135 ATWLERVGLLEHANRQAGNLAYGQQR------RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR----NEHN 204 (255)
T ss_pred HHHHHhCChhhhhhCChhhCCHHHHH------HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH----hhcC
Confidence 34455555433 3455789999999 9999999999999999999999999999999999999872 2237
Q ss_pred cEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.++|+|||++.++..+||++++...|+|...|+...++.
T Consensus 205 ~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 205 VTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 899999999999999999999999999998887655443
No 231
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.55 E-value=6.3e-15 Score=177.49 Aligned_cols=106 Identities=9% Similarity=0.093 Sum_probs=91.3
Q ss_pred HHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1086 SYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1086 ~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
+..++..++.. + ...++.||||||| |++||++|+.+|++|||||||+|||+.++..+.++|..+. .
T Consensus 389 ~~~~l~~~~l~~~~~~~~~~~LSgGq~q------rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-----~ 457 (510)
T PRK09700 389 AENQRELLALKCHSVNQNITELSGGNQQ------KVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA-----D 457 (510)
T ss_pred HHHHHHhcCCCCCCccCccccCChHHHH------HHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHH-----H
Confidence 44566677764 3 4556899999999 9999999999999999999999999999999999999872 3
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
.|.+||+||||+.++..+||++++.+.|+|...++....+
T Consensus 458 ~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 497 (510)
T PRK09700 458 DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDM 497 (510)
T ss_pred CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcccC
Confidence 5889999999999999999999999999998877553443
No 232
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=7.6e-15 Score=159.73 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=106.5
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcc----ccchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEG----AGTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+++.++++|+.. |+++..+++.+.....+ .........++..++..+ ...+..|||||++ |
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q------r 157 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ------R 157 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH------H
Confidence 3445577788774 56677777765322111 011122334444444321 2345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++++|||||+|||+.++..|..+|..+ .. +.++|||||++.++..+||+++....|+|...|+
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-----~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL-----KK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----hh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999987 22 4799999999999999999999999999998887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
...++.
T Consensus 232 ~~~~~~ 237 (253)
T PRK14261 232 TTQIFE 237 (253)
T ss_pred HHHHHh
Confidence 666543
No 233
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.55 E-value=7.7e-15 Score=176.73 Aligned_cols=144 Identities=18% Similarity=0.226 Sum_probs=112.0
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCcccc------chhHHHHHHHH-cCCcc---ccccCCCChhhhhhhhH
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAG------TRSYSYKVLMQ-TGDAE---LEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~---~~~~~~lSgG~k~l~sl 1114 (1209)
....+++.++++.|.. |.|+..+++.+........ ..+.+...++. +.+.+ .++.+.|||||||
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ---- 616 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ---- 616 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH----
Confidence 3467889999999998 6899999998754322210 11111222222 22211 2344679999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|+||||||.++|++|+|||||++||+.+...+.+.|..+. .|.|+|+|||+..++. .||+++++..|+|..
T Consensus 617 --rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~------~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~ 687 (709)
T COG2274 617 --RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL------QGRTVIIIAHRLSTIR-SADRIIVLDQGKIVE 687 (709)
T ss_pred --HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh------cCCeEEEEEccchHhh-hccEEEEccCCceec
Confidence 9999999999999999999999999999999999999982 5689999999999986 789999999999999
Q ss_pred cCCcccccc
Q 000957 1195 DDHQHSIIE 1203 (1209)
Q Consensus 1195 ~~~~~s~~~ 1203 (1209)
+|+......
T Consensus 688 ~gs~~ell~ 696 (709)
T COG2274 688 QGSHEELLA 696 (709)
T ss_pred cCCHHHHHH
Confidence 997665543
No 234
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.55 E-value=9.5e-15 Score=159.11 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
....++..++... ...+..|||||+| |++||++|+.+|++|+|||||++||+.++..|..+|..+. .
T Consensus 127 ~~~~~l~~l~l~~~~~~~~~~~LSgG~~q------rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~----~ 196 (253)
T TIGR02323 127 AAHDWLEEVEIDPTRIDDLPRAFSGGMQQ------RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV----R 196 (253)
T ss_pred HHHHHHHHcCCChhhhhcCchhcCHHHHH------HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH----H
Confidence 3445566666531 2355789999999 9999999999999999999999999999999999999873 2
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+.|.++|+|||+..++..+||+++.+..|++...|+...++.
T Consensus 197 ~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~ 238 (253)
T TIGR02323 197 DLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238 (253)
T ss_pred hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhc
Confidence 347899999999999999999999999999998887665554
No 235
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.55 E-value=1e-14 Score=158.52 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=91.8
Q ss_pred HHHHHHHcCCcc-----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1086 SYKVLMQTGDAE-----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1086 ~~~~~~~~~~~~-----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
...++..++... ...++.|||||+| |++||++|+.+|++|||||||+|||+.+...|..+|..+.
T Consensus 118 ~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~q------rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~---- 187 (254)
T PRK10418 118 LTAALEAVGLENAARVLKLYPFEMSGGMLQ------RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIV---- 187 (254)
T ss_pred HHHHHHHcCCCChhhhhhcCCcccCHHHHH------HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH----
Confidence 445566666543 2345789999999 9999999999999999999999999999999999999873
Q ss_pred cCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1161 GQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
...|.+||+|||++.++..+||+++....|+|...|+...+..
T Consensus 188 ~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 188 QKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 2347899999999999999999999999999999887665543
No 236
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.55 E-value=8e-15 Score=177.07 Aligned_cols=140 Identities=21% Similarity=0.236 Sum_probs=106.0
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCC--ccccchhHHHHHHHHcCCcc-------ccccCCCChhhhhhhhHHHHHHH
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDS--EGAGTRSYSYKVLMQTGDAE-------LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+.++++||.+ |+ .+..+++.+.... ........+..++..++... ...++.|||||+| |++|
T Consensus 365 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q------rv~l 438 (520)
T TIGR03269 365 RYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH------RVAL 438 (520)
T ss_pred hhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH------HHHH
Confidence 4467777764 33 3566666542111 11111123445666666642 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|||||||+|||+.++..|.++|.++. ...|.+|||||||+.++..+||+++.++.|+|...|++..
T Consensus 439 aral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR----EEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999873 2347899999999999999999999999999988876655
Q ss_pred cc
Q 000957 1201 II 1202 (1209)
Q Consensus 1201 ~~ 1202 (1209)
++
T Consensus 515 ~~ 516 (520)
T TIGR03269 515 IV 516 (520)
T ss_pred HH
Confidence 43
No 237
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.55 E-value=7.6e-15 Score=160.47 Aligned_cols=148 Identities=21% Similarity=0.238 Sum_probs=118.3
Q ss_pred HhhhcHHHHHHHHhhhcccc--cCCcchhhhhhccCC-cc-----ccchhHHHHHHHHcC-Cccc---cccCCCChhhhh
Q 000957 1043 FHTMKMEEINKIIRELWQQT--YRGQDIDYIRIHSDS-EG-----AGTRSYSYKVLMQTG-DAEL---EMRGRCSAGQKV 1110 (1209)
Q Consensus 1043 ~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~-~~~~---~~~~~lSgG~k~ 1110 (1209)
...+..+.+-++++|++|.. |+||..++|.-+.+. ++ +.+...+..++..++ +.+. +--..|||||||
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 34455677888999999997 999999999766532 22 122334556665553 3332 122469999999
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCc
Q 000957 1111 LASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYY 1190 (1209)
Q Consensus 1111 l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~ 1190 (1209)
|++|||||+++|-+++||||-+|||...-..|.+.|..+ +..|.++|||||.+..+. .+|.+.+++.|
T Consensus 480 ------RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~-----k~rG~~vvviaHRPs~L~-~~Dkilvl~~G 547 (580)
T COG4618 480 ------RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA-----KARGGTVVVIAHRPSALA-SVDKILVLQDG 547 (580)
T ss_pred ------HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHH-----HHcCCEEEEEecCHHHHh-hcceeeeecCC
Confidence 999999999999999999999999999999999999988 567999999999999876 67999999999
Q ss_pred EEeecCCccccc
Q 000957 1191 RVAKDDHQHSII 1202 (1209)
Q Consensus 1191 ~v~~~~~~~s~~ 1202 (1209)
+|...|+-..++
T Consensus 548 ~~~~FG~r~eVL 559 (580)
T COG4618 548 RIAAFGPREEVL 559 (580)
T ss_pred hHHhcCCHHHHH
Confidence 999998766554
No 238
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.55 E-value=6.6e-15 Score=158.06 Aligned_cols=98 Identities=27% Similarity=0.349 Sum_probs=83.8
Q ss_pred HHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1088 KVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1088 ~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
.++..++.. . ...+..|||||+| |++||++|+.+|++|+|||||++||+.++..|...|.++. ...|
T Consensus 127 ~~l~~~~l~~~~~~~~~~~LS~G~~q------rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~~ 196 (228)
T cd03257 127 LLLVGVGLPEEVLNRYPHELSGGQRQ------RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQ----EELG 196 (228)
T ss_pred HHHHHCCCChhHhhCCchhcCHHHHH------HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH----HHcC
Confidence 445555653 2 3455889999999 9999999999999999999999999999999999999883 2237
Q ss_pred cEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
.+||+||||+.++..+||+++..+.|+|...
T Consensus 197 ~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 197 LTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred CEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 8999999999999999999999988888654
No 239
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.55 E-value=6.6e-15 Score=149.65 Aligned_cols=76 Identities=32% Similarity=0.347 Sum_probs=67.2
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhH
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQR 1183 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~ 1183 (1209)
|||||++ |++||++|+.+|++|+|||||++||+.++..|.+.|..+ ...|.++|+||||..++. +||+
T Consensus 97 LS~G~~q------rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tii~~sh~~~~~~-~~d~ 164 (173)
T cd03246 97 LSGGQRQ------RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL-----KAAGATRIVIAHRPETLA-SADR 164 (173)
T ss_pred cCHHHHH------HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH-----HhCCCEEEEEeCCHHHHH-hCCE
Confidence 9999999 999999999999999999999999999999999999887 234789999999999885 6777
Q ss_pred hhhhcCcE
Q 000957 1184 QHAEKYYR 1191 (1209)
Q Consensus 1184 ~~~~~~~~ 1191 (1209)
++.+..|+
T Consensus 165 v~~l~~G~ 172 (173)
T cd03246 165 ILVLEDGR 172 (173)
T ss_pred EEEEECCC
Confidence 66655443
No 240
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1e-14 Score=138.91 Aligned_cols=119 Identities=24% Similarity=0.278 Sum_probs=91.4
Q ss_pred cchhhhhhccCCc---cccchhHHHHHHHHcCCc--cccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCC
Q 000957 1066 QDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDA--ELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNL 1140 (1209)
Q Consensus 1066 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~L 1140 (1209)
+.++++.+.-... +..++..+..++..+|.. +..++.+|||||+| |+.|||||+.+|.+|+||||+++|
T Consensus 90 ~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQ------RvGiARALa~eP~~LlLDEPfgAl 163 (259)
T COG4525 90 NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQ------RVGIARALAVEPQLLLLDEPFGAL 163 (259)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHH------HHHHHHHhhcCcceEeecCchhhH
Confidence 4555555532222 233344556666677644 46778899999999 999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhh--cCcEEee
Q 000957 1141 DGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAE--KYYRVAK 1194 (1209)
Q Consensus 1141 D~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~--~~~~v~~ 1194 (1209)
|.-+++.+..+|.+++. ..|+++++||||.+.+--++++..++ ..|+|+.
T Consensus 164 Da~tRe~mQelLldlw~----~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 164 DALTREQMQELLLDLWQ----ETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred HHHHHHHHHHHHHHHHH----HhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 99999999999999963 46899999999999998777774433 3355544
No 241
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=1.3e-14 Score=159.16 Aligned_cols=143 Identities=23% Similarity=0.242 Sum_probs=104.3
Q ss_pred HHHHHHhhhcccc---cCC-cchhhhhhccCCccc---cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1050 EINKIIRELWQQT---YRG-QDIDYIRIHSDSEGA---GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
.+++.++++|+.+ |++ +..+++.+.....+. .....+..++..++..+ ...++.|||||++ |++|
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~l 153 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQ------RVAI 153 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHH------HHHH
Confidence 4555677777764 332 334444332111111 11123345566666543 3455789999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|+|||||+|||+.++..|...|.++. ...|.+||+|||+..++.. ||+++....|+|...|+...
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVK----SEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999872 2347899999999999985 99999999999998886555
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
++.
T Consensus 229 ~~~ 231 (269)
T PRK13648 229 IFD 231 (269)
T ss_pred Hhc
Confidence 443
No 242
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.4e-14 Score=157.48 Aligned_cols=142 Identities=16% Similarity=0.233 Sum_probs=107.1
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCcc--c--cchhHHHHHHHHcCCcc------ccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEG--A--GTRSYSYKVLMQTGDAE------LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~------~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+.+.++++|+.. |+++..+++.+.....+ . .........+..++..+ ...++.|||||++ |
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q------r 154 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ------R 154 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH------H
Confidence 4456678888774 56677777754321111 0 11122333444444321 2345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||+|||+.+...|..+|.++ .+ |.+||+|||+..++..+|+++++...|+|...|+
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-----~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-----KE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-----hc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999987 22 6799999999999999999999899999998887
Q ss_pred cccccc
Q 000957 1198 QHSIIE 1203 (1209)
Q Consensus 1198 ~~s~~~ 1203 (1209)
...+..
T Consensus 229 ~~~~~~ 234 (250)
T PRK14266 229 TDQIFI 234 (250)
T ss_pred HHHHHh
Confidence 665543
No 243
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.54 E-value=1e-14 Score=159.45 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=91.8
Q ss_pred HHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.+..++..++.. . ...+..|||||+| |++||++|+.+|++|||||||++||+.++..|.++|.++. .
T Consensus 128 ~~~~~l~~~~l~~~~~~~~~~~LS~G~~q------rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~ 197 (267)
T PRK15112 128 QIIETLRQVGLLPDHASYYPHMLAPGQKQ------RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQ----E 197 (267)
T ss_pred HHHHHHHHcCCChHHHhcCchhcCHHHHH------HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----H
Confidence 344566666652 2 2345789999999 9999999999999999999999999999999999999883 2
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
..|.+||+|||+..++..+||+++....|+|...|+...+..
T Consensus 198 ~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 198 KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 247899999999999999999999999999998876555443
No 244
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=1.1e-14 Score=155.98 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=78.6
Q ss_pred HHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1087 YKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1087 ~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
..++..++... ...++.|||||+| |++||++|+.+|++|+|||||++||+.++..+..+|..+. ...|
T Consensus 97 ~~~l~~l~l~~~~~~~~~~LSgGe~q------rv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~ 166 (246)
T cd03237 97 TEIAKPLQIEQILDREVPELSGGELQ------RVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA----ENNE 166 (246)
T ss_pred HHHHHHcCCHHHhhCChhhCCHHHHH------HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcC
Confidence 34555555543 3455889999999 9999999999999999999999999999999999999883 2347
Q ss_pred cEEEEEecCHHHHHHhhhHhhhhcC
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAEKY 1189 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~~~ 1189 (1209)
.+|||||||+.++..+||+++.+.-
T Consensus 167 ~tiiivsHd~~~~~~~~d~i~~l~~ 191 (246)
T cd03237 167 KTAFVVEHDIIMIDYLADRLIVFEG 191 (246)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 8999999999999999998776644
No 245
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.54 E-value=1.1e-14 Score=174.69 Aligned_cols=135 Identities=15% Similarity=0.147 Sum_probs=104.4
Q ss_pred Hhhhcccc--cC-CcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCC
Q 000957 1055 IRELWQQT--YR-GQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCG 1129 (1209)
Q Consensus 1055 ~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~ 1129 (1209)
++++||.. |+ .+..+++.+.... ..........++..++... ...++.|||||+| |++||++|+.+|+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~la~aL~~~p~ 160 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK-RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQ------IVEILRGLMRDSR 160 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc-chHHHHHHHHHHHHcCCCccccCChhhCCHHHHH------HHHHHHHHHcCCC
Confidence 56777764 33 3566666543211 1111223445666666643 3456899999999 9999999999999
Q ss_pred eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1130 ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1130 ~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
+|+|||||+|||+.++..|..+|.++ ...|.+||+||||++++..+||+++++..|+|...|+...+
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~-----~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 161 ILILDEPTASLTPAETERLFSRIREL-----LAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999987 23478999999999999999999999999999988765443
No 246
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-14 Score=160.62 Aligned_cols=139 Identities=24% Similarity=0.310 Sum_probs=109.5
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc------------c-cccCCCChhhhhhhh
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE------------L-EMRGRCSAGQKVLAS 1113 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~lSgG~k~l~s 1113 (1209)
..++..++.+.|.. |.+|..+++.+....- .....+.++..+|..+ . +...+|||||++
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~A---sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r--- 481 (573)
T COG4987 408 QALRETISVLTQRVHLFSGTLRDNLRLANPDA---SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR--- 481 (573)
T ss_pred hhHHHHHhhhccchHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH---
Confidence 34667778888776 7899999987754321 1123444555444332 1 223579999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1114 LIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1114 l~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|+||||+|.++.|+++|||||.|||+.+-..+...|.+.+ .|.|+|+|||+...++ .||++.++..|++.
T Consensus 482 ---RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~------~~kTll~vTHrL~~le-~~drIivl~~Gkii 551 (573)
T COG4987 482 ---RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA------EGKTLLMVTHRLRGLE-RMDRIIVLDNGKII 551 (573)
T ss_pred ---HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh------cCCeEEEEecccccHh-hcCEEEEEECCeee
Confidence 9999999999999999999999999999999999998863 5789999999999987 57999999999999
Q ss_pred ecCCcccccc
Q 000957 1194 KDDHQHSIIE 1203 (1209)
Q Consensus 1194 ~~~~~~s~~~ 1203 (1209)
..|+..+...
T Consensus 552 e~G~~~~Ll~ 561 (573)
T COG4987 552 EEGTHAELLA 561 (573)
T ss_pred ecCCHHhhhc
Confidence 9998777654
No 247
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.2e-14 Score=177.98 Aligned_cols=142 Identities=19% Similarity=0.210 Sum_probs=108.8
Q ss_pred HHHHhhhccccc----C-Ccchhhhhhcc---CCc-cccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHH
Q 000957 1052 NKIIRELWQQTY----R-GQDIDYIRIHS---DSE-GAGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1052 ~~~~~~~~~~~~----~-~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
++.++++||..+ + .+..+++.... +.. .......+..++..+|.. . ..+++.|||||+| |++
T Consensus 400 ~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ------Rv~ 473 (623)
T PRK10261 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ------RIC 473 (623)
T ss_pred cCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH------HHH
Confidence 344677888742 2 24455543321 110 111123455677777764 2 3567899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||++|+.+|++|||||||++||+.++..|.++|.++. ...|.+||+||||+.++..+||++++++.|+|+..|+..
T Consensus 474 iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~----~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~ 549 (623)
T PRK10261 474 IARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQ----RDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRR 549 (623)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999983 234789999999999999999999999999999988776
Q ss_pred cccc
Q 000957 1200 SIIE 1203 (1209)
Q Consensus 1200 s~~~ 1203 (1209)
.++.
T Consensus 550 ~i~~ 553 (623)
T PRK10261 550 AVFE 553 (623)
T ss_pred HHhc
Confidence 6654
No 248
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-14 Score=163.48 Aligned_cols=142 Identities=25% Similarity=0.267 Sum_probs=109.3
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCc---------c--c-cccCCCChhhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDA---------E--L-EMRGRCSAGQKVLA 1112 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~-~~~~~lSgG~k~l~ 1112 (1209)
.....++.+..+.|++ |+|+..+++.+..... .....+.+....+.. + . +....|||||+|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~---s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~Q-- 463 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAGTIRENILLARPDA---SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQ-- 463 (559)
T ss_pred CHHHHHhHeeeeCCCCccccccHHHHhhccCCcC---CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHH--
Confidence 3467778889999998 5899999997754321 112233333322211 1 1 122359999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
|+|+||||++||++++|||||++||.++-..+.+.|.++. .+.|+|||||++..+. -||.++++..|++
T Consensus 464 ----RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~------~~ktvl~itHrl~~~~-~~D~I~vld~G~l 532 (559)
T COG4988 464 ----RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA------KQKTVLVITHRLEDAA-DADRIVVLDNGRL 532 (559)
T ss_pred ----HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH------hCCeEEEEEcChHHHh-cCCEEEEecCCce
Confidence 9999999999999999999999999999999999999883 4579999999999886 4688899999999
Q ss_pred eecCCccccccc
Q 000957 1193 AKDDHQHSIIEA 1204 (1209)
Q Consensus 1193 ~~~~~~~s~~~~ 1204 (1209)
...|...+.-..
T Consensus 533 ~~~g~~~~L~~~ 544 (559)
T COG4988 533 VEQGTHEELSEK 544 (559)
T ss_pred eccCCHHHHhhc
Confidence 999977666443
No 249
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.5e-14 Score=158.75 Aligned_cols=105 Identities=21% Similarity=0.204 Sum_probs=88.3
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
...++..++... ...++.|||||++ |++||++|+.+|++|+|||||++||+.++..|.++|..+ ...
T Consensus 123 ~~~~l~~~gl~~~~~~~~~~LSgG~~q------rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~-----~~~ 191 (272)
T PRK15056 123 VTAALARVDMVEFRHRQIGELSGGQKK------RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-----RDE 191 (272)
T ss_pred HHHHHHHcCChhHhcCCcccCCHHHHH------HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----HhC
Confidence 334555666543 3456899999999 999999999999999999999999999999999999987 234
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
|.+||+||||.+++..+||+++.. .|+|...|+...++
T Consensus 192 g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 192 GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 789999999999999999998666 79998887665544
No 250
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.54 E-value=1.7e-14 Score=154.75 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=83.3
Q ss_pred HHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCc
Q 000957 1088 KVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENF 1165 (1209)
Q Consensus 1088 ~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~ 1165 (1209)
.++..++..+ ...+..|||||++ |++||++|+.+|++|+|||||++||+.++..|.++|.++. ...|.
T Consensus 136 ~~l~~~gl~~~~~~~~~~LS~G~~q------rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~ 205 (236)
T cd03267 136 ELSELLDLEELLDTPVRQLSLGQRM------RAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN----RERGT 205 (236)
T ss_pred HHHHHcCChhHhcCChhhCCHHHHH------HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH----hcCCC
Confidence 3445555443 3345789999999 9999999999999999999999999999999999999872 23478
Q ss_pred EEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1166 QLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1166 ~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
+||+|||++.++..+||+++....|+|...
T Consensus 206 tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 206 TVLLTSHYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred EEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence 999999999999999999999888888654
No 251
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.54 E-value=1.5e-14 Score=154.23 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=101.4
Q ss_pred HHhhhcccc--cC-CcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCC
Q 000957 1054 IIRELWQQT--YR-GQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNC 1128 (1209)
Q Consensus 1054 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~ 1128 (1209)
.++++|+.. |+ .+..+++.+.....+. .......++..++... ...+..|||||++ |++||++|+.+|
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~------rv~laral~~~p 143 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLGL-PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQ------RLGIAIALLNHP 143 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcCC-CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHH------HHHHHHHHhcCC
Confidence 345566543 32 4566666442211111 1123445666666543 2345789999999 999999999999
Q ss_pred CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1129 GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1129 ~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
++|+|||||+|||+.++..|..+|.++ ...|.+||+||||..++..+||+++....|+|...|++.
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~-----~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSF-----PEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHH-----HHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 999999999999999999999999987 234789999999999999999999999999998887654
No 252
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.54 E-value=1.5e-14 Score=147.91 Aligned_cols=82 Identities=27% Similarity=0.283 Sum_probs=73.6
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
+..|||||++ |++||++++.+|++|+|||||++||+.++..|.+.|..+ . .+.++|+|||+..++. .
T Consensus 96 ~~~LS~G~~q------rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tii~~sh~~~~~~-~ 162 (178)
T cd03247 96 GRRFSGGERQ------RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-----L-KDKTLIWITHHLTGIE-H 162 (178)
T ss_pred cccCCHHHHH------HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-----c-CCCEEEEEecCHHHHH-h
Confidence 4589999999 999999999999999999999999999999999999887 2 3789999999999996 5
Q ss_pred hhHhhhhcCcEEeec
Q 000957 1181 GQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~~~ 1195 (1209)
|++++....|+|...
T Consensus 163 ~d~~~~l~~g~i~~~ 177 (178)
T cd03247 163 MDKILFLENGKIIMQ 177 (178)
T ss_pred CCEEEEEECCEEEec
Confidence 888888888887654
No 253
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.54 E-value=1.5e-14 Score=156.79 Aligned_cols=103 Identities=22% Similarity=0.221 Sum_probs=87.2
Q ss_pred HHHHHHHcCCc-c--ccccC-CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1086 SYKVLMQTGDA-E--LEMRG-RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1086 ~~~~~~~~~~~-~--~~~~~-~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
...++..++.. . ...+. .|||||+| |++||++|+.+|++|+|||||++||+.++..|..+|.++ .
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~LS~G~~q------rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~ 191 (243)
T TIGR01978 123 LKAKLALLGMDEEFLNRSVNEGFSGGEKK------RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL-----R 191 (243)
T ss_pred HHHHHHHcCCchhhcccccccCcCHHHHH------HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH-----H
Confidence 34455566654 2 23344 49999999 999999999999999999999999999999999999987 2
Q ss_pred CCCcEEEEEecCHHHHHHh-hhHhhhhcCcEEeecCCcc
Q 000957 1162 QENFQLIVITHDERFAQLI-GQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 1199 (1209)
..|.+||+||||++++..+ ||+++++..|+|...|+..
T Consensus 192 ~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 192 EPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 3578999999999999998 8999999999998887653
No 254
>PRK02224 chromosome segregation protein; Provisional
Probab=99.53 E-value=1.2e-07 Score=122.91 Aligned_cols=128 Identities=16% Similarity=0.251 Sum_probs=94.4
Q ss_pred cccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCC-CchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 26 RCADMDREVPALMGVSKAILENVIFVHQDEANWPLQ-DPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKL 104 (1209)
Q Consensus 26 k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~-ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~lK~~~~~l 104 (1209)
...+++.+|+.+||+++.+|.|+|||||+++.|||. .|+..++.||+|||..+|....+.+...+.....-...+...+
T Consensus 110 ~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 189 (880)
T PRK02224 110 GARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLINATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSL 189 (880)
T ss_pred ChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHcCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999997 7999999999999999999988888886666666666666666
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000957 105 ENLQTLKDAA--YKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTE 153 (1209)
Q Consensus 105 ~~lk~~ke~a--~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~ 153 (1209)
+.++...... ..+...+..++..+..+..++..+...+..+...+..+.
T Consensus 190 ~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 190 DQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665543332 334445555555555555555555555555544444443
No 255
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.7e-14 Score=160.35 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=104.1
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCc------------cc----cchhHHHHHHHHcCCc----c--ccccCCCC
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSE------------GA----GTRSYSYKVLMQTGDA----E--LEMRGRCS 1105 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------~~----~~~~~~~~~~~~~~~~----~--~~~~~~lS 1105 (1209)
.+.+.++++|+.. |+++..+++.+..... +. .....+..++..++.. . ...+..||
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 202 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLS 202 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCC
Confidence 3445677777764 5566777665421100 00 0112233444545432 1 23457899
Q ss_pred hhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHh-
Q 000957 1106 AGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQ- 1184 (1209)
Q Consensus 1106 gG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~- 1184 (1209)
|||++ |++||++|+.+|++|||||||+|||+.+...|..+|..+. . +.+||||||++.++..+|+++
T Consensus 203 gGq~q------rv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~-----~-~~tiiivtH~~~~i~~~~d~i~ 270 (305)
T PRK14264 203 GGQQQ------RLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA-----E-EYTVVVVTHNMQQAARISDQTA 270 (305)
T ss_pred HHHHH------HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-----c-CCEEEEEEcCHHHHHHhcCEEE
Confidence 99999 9999999999999999999999999999999999999872 2 479999999999999999996
Q ss_pred hhhcCcEEeecCCcccccc
Q 000957 1185 HAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1185 ~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+++..|+|...|+...++.
T Consensus 271 ~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 271 VFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred EEecCCEEEEeCCHHHHHh
Confidence 5678899999887665543
No 256
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=2.4e-14 Score=154.13 Aligned_cols=139 Identities=21% Similarity=0.236 Sum_probs=100.8
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCccccc-hh-----HHHHHHHHc--CCcc--ccccCCCChhhhhhhhHHHHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEGAGT-RS-----YSYKVLMQT--GDAE--LEMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~--~~~~--~~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
+.+.++++|+.. |+++..+++.+......... .. ....++..+ +... ...+..|||||+| |+
T Consensus 74 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q------rv 147 (234)
T cd03251 74 LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ------RI 147 (234)
T ss_pred HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH------HH
Confidence 455567777764 45677777765432111000 00 111222222 1111 2345789999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
+||++|+.+|++|+|||||++||+.++..|.+.|..+ . .+.+||+|||+..++.. ||+++..+.|++...++.
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~ 220 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERL-----M-KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTH 220 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCH
Confidence 9999999999999999999999999999999999887 2 37899999999999976 999999999999888765
Q ss_pred cccc
Q 000957 1199 HSII 1202 (1209)
Q Consensus 1199 ~s~~ 1202 (1209)
..+.
T Consensus 221 ~~~~ 224 (234)
T cd03251 221 EELL 224 (234)
T ss_pred HHHH
Confidence 5443
No 257
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.53 E-value=1.3e-14 Score=168.89 Aligned_cols=103 Identities=25% Similarity=0.264 Sum_probs=86.7
Q ss_pred HHHHHHHcCCcc-ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1086 SYKVLMQTGDAE-LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1086 ~~~~~~~~~~~~-~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
+..++..+|... ...++.||||||+ |++||++|..+|++|+|||||++||..++.-|.+.|... .|
T Consensus 135 ~~~~L~gLg~~~~~~~~~~LSGG~r~------Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-------~g 201 (530)
T COG0488 135 AEEALLGLGFPDEDRPVSSLSGGWRR------RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-------PG 201 (530)
T ss_pred HHHHHhcCCCCcccCchhhcCHHHHH------HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-------CC
Confidence 344555555544 3556899999999 999999999999999999999999999999988888765 56
Q ss_pred cEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+|||||||..|+..+|++++-...+.+..-+.+.|.+
T Consensus 202 -tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 202 -TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred -cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 9999999999999999999999998887765455543
No 258
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2e-14 Score=155.83 Aligned_cols=142 Identities=17% Similarity=0.228 Sum_probs=106.2
Q ss_pred HHHHHHhhhcccc--cCC-cchhhhhhccCCc---cc-cchhHHHHHHHHcCCc------cccccCCCChhhhhhhhHHH
Q 000957 1050 EINKIIRELWQQT--YRG-QDIDYIRIHSDSE---GA-GTRSYSYKVLMQTGDA------ELEMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~-~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~------~~~~~~~lSgG~k~l~sl~i 1116 (1209)
.+...++++|+.. |++ +..+++.+..... .. .........+..++.. ....++.|||||++
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q------ 160 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQ------ 160 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHH------
Confidence 3455677777774 444 6677776532111 11 1112233444455542 12355789999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++||++|+.+|++++|||||++||+.+...|...|..+ . .+.|+|+|||+..++..+|++++....|++...|
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-----~-~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-----K-NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-----h-cCcEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999887 2 2579999999999999999999999999999888
Q ss_pred Ccccccc
Q 000957 1197 HQHSIIE 1203 (1209)
Q Consensus 1197 ~~~s~~~ 1203 (1209)
+...+..
T Consensus 235 ~~~~~~~ 241 (257)
T PRK14246 235 SSNEIFT 241 (257)
T ss_pred CHHHHHh
Confidence 7665544
No 259
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.53 E-value=1.5e-14 Score=178.19 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=110.2
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCcccc------chhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhH
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAG------TRSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl 1114 (1209)
....+++.+++++|.+ |+||..++|.+........ ........+...+ +.+ . +....|||||||
T Consensus 417 ~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQ---- 492 (588)
T PRK11174 417 DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ---- 492 (588)
T ss_pred CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHH----
Confidence 3467888999999997 6999999998853211111 1112222333332 111 1 222469999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++|||||+.+|++|+|||||++||+.+...+.+.|..+ ..+.|+|+|||++..+. .||++++...|+|..
T Consensus 493 --RialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~------~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e 563 (588)
T PRK11174 493 --RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA------SRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQ 563 (588)
T ss_pred --HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH------hCCCEEEEEecChHHHH-hCCEEEEEeCCeEee
Confidence 999999999999999999999999999999999999876 25789999999999886 489999999999999
Q ss_pred cCCccccccc
Q 000957 1195 DDHQHSIIEA 1204 (1209)
Q Consensus 1195 ~~~~~s~~~~ 1204 (1209)
.|+....+..
T Consensus 564 ~G~~~eL~~~ 573 (588)
T PRK11174 564 QGDYAELSQA 573 (588)
T ss_pred cCCHHHHHhc
Confidence 8876666543
No 260
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=2e-14 Score=154.21 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=79.3
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
.+..|||||++ |++||++|+.+|++|+|||||+|||+.++..|.++|..+ . .|.+||+|||+..++.
T Consensus 136 ~~~~LS~G~~~------rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tii~~sh~~~~~~- 202 (229)
T cd03254 136 NGGNLSQGERQ------LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-----M-KGRTSIIIAHRLSTIK- 202 (229)
T ss_pred CCCcCCHHHHH------HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEecCHHHHh-
Confidence 34789999999 999999999999999999999999999999999999887 3 3789999999999996
Q ss_pred hhhHhhhhcCcEEeecCCcccc
Q 000957 1180 IGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
.|++++.++.|++...++...+
T Consensus 203 ~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 203 NADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred hCCEEEEEeCCeEEEeCCHHHH
Confidence 4999999999999887754433
No 261
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.53 E-value=2.2e-14 Score=150.91 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=95.7
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHHHHHHHHhccC
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLN 1127 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~ 1127 (1209)
.++..++++|+.+ |+++..+++.+.... . .. .+....+ ....+..|||||++ |++||++|+.+
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~-~---~~---~~~~~l~--~~~~~~~LS~G~~q------rv~laral~~~ 143 (207)
T cd03369 79 DLRSSLTIIPQDPTLFSGTIRSNLDPFDEY-S---DE---EIYGALR--VSEGGLNLSQGQRQ------LLCLARALLKR 143 (207)
T ss_pred HHHhhEEEEecCCcccCccHHHHhcccCCC-C---HH---HHHHHhh--ccCCCCcCCHHHHH------HHHHHHHHhhC
Confidence 3455677888875 466777776543211 1 11 1111112 12345789999999 99999999999
Q ss_pred CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1128 CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1128 ~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
|++++|||||++||+.+...|.++|..+ . .|.++|+|||+..++.. ||++++++.|+|...|+
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREE-----F-TNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 9999999999999999999999999886 2 37899999999999976 89999998898877664
No 262
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.53 E-value=1.4e-14 Score=156.20 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=88.8
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
...++..++..+ ...+..|||||++ |++||++|+.+|++|+|||||++||+.++..|.+.|..+. ...
T Consensus 101 ~~~~l~~~gl~~~~~~~~~~LSgGq~q------rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~ 170 (251)
T PRK09544 101 ILPALKRVQAGHLIDAPMQKLSGGETQ------RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLR----REL 170 (251)
T ss_pred HHHHHHHcCChHHHhCChhhCCHHHHH------HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH----Hhc
Confidence 344566666544 2355789999999 9999999999999999999999999999999999999873 223
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
|.+||+||||..++..+||+++.+. ++|...|++.+++.
T Consensus 171 g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~~ 209 (251)
T PRK09544 171 DCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVSL 209 (251)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHhC
Confidence 7899999999999999999998886 47888777665543
No 263
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.53 E-value=1.4e-14 Score=155.60 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=103.3
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++++.. |++ +..+++.+.....+ .........++..++... ...++.|||||++ |++||++|
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q------rl~laral 145 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQ------RVALARAL 145 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHH------HHHHHHHH
Confidence 3456666653 443 55666543221111 111223345566666543 3445789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
+.+|++++|||||+|||+.+...|..+|.++. ...|.++|+|||++.++..+||+++....|+|...|+....
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~----~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLH----DEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999872 22378999999999999999999999999999988765444
No 264
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.52 E-value=1.7e-14 Score=154.06 Aligned_cols=134 Identities=17% Similarity=0.138 Sum_probs=98.2
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCcc----c--cchhHHHH-HHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSEG----A--GTRSYSYK-VLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~----~--~~~~~~~~-~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+.++++|+.. |++ +..+++.+...... . ........ .+..++... ...+..|||||++ |++
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~ 153 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERR------RVS 153 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHH------HHH
Confidence 44566777764 444 66777664321110 0 00111222 444445443 2345789999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH-HHHHHhhhHhhhhcCcEEeecC
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE-RFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~-~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
||++|+.+|++|+|||||+|||+.+...|..+|.++. ..|.++|+|||+. ..+..+||++++...|+|...|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~-----~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA-----RRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999872 2478999999998 6899999999999999987653
No 265
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.52 E-value=2.9e-14 Score=148.19 Aligned_cols=92 Identities=68% Similarity=0.975 Sum_probs=80.1
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHH-HHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAE-SLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~-~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
..++.|||||+++++|++|++|+++++.+|++++|||||++||+.++. .+.+.|.++. ...|.++|+|||++.++
T Consensus 111 ~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~----~~~~~~iiiitH~~~~~ 186 (204)
T cd03240 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERK----SQKNFQLIVITHDEELV 186 (204)
T ss_pred cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHH----hccCCEEEEEEecHHHH
Confidence 345789999999999999999999999999999999999999999999 9999998872 22378999999999987
Q ss_pred HHhhhHhhhhcCcEEeecCCccc
Q 000957 1178 QLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1178 ~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
. .+++.+.+.++|.+.|
T Consensus 187 ~------~~d~i~~l~~~~~~~~ 203 (204)
T cd03240 187 D------AADHIYRVEKDGRQKS 203 (204)
T ss_pred h------hCCEEEEEeeCCCCCC
Confidence 6 5777888888876544
No 266
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.52 E-value=1.9e-14 Score=173.99 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=91.9
Q ss_pred HHHHHHHHcCCcc-----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhh
Q 000957 1085 YSYKVLMQTGDAE-----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDR 1159 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~-----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~ 1159 (1209)
.+..++..++..+ ...++.|||||+| |++||++|+.+|++|+|||||++||+.++..|.++|.++.
T Consensus 133 ~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q------rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--- 203 (529)
T PRK15134 133 EILNCLDRVGIRQAAKRLTDYPHQLSGGERQ------RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQ--- 203 (529)
T ss_pred HHHHHHHHCCCCChHHHHhhCCcccCHHHHH------HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHH---
Confidence 3445666667643 3456899999999 9999999999999999999999999999999999999983
Q ss_pred ccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1160 KGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1160 ~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
.+.|.+||+||||++++..+||+++++..|+|...|++..+
T Consensus 204 -~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 204 -QELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred -HhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 23478999999999999999999999999999888765544
No 267
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.52 E-value=2.4e-14 Score=155.00 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=83.5
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..++.|||||++ |++||++++.+|++|+|||||+|||+..+..+...|.++ ...|.++|+|||+..++.
T Consensus 139 ~~~~~LS~Gq~q------rv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~-----~~~g~tiIiisH~~~~i~ 207 (264)
T PRK13546 139 QPVKKYSSGMRA------KLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF-----KEQNKTIFFVSHNLGQVR 207 (264)
T ss_pred CCcccCCHHHHH------HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH-----HHCCCEEEEEcCCHHHHH
Confidence 345789999999 999999999999999999999999999999999999887 235789999999999999
Q ss_pred HhhhHhhhhcCcEEeecCCccccc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
.+|++++.+..|+|...|+...++
T Consensus 208 ~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 208 QFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999887655443
No 268
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.52 E-value=2e-14 Score=153.12 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=91.2
Q ss_pred HHHHhhhcccc--cCCcchhhhhhccCCccc-cchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1052 NKIIRELWQQT--YRGQDIDYIRIHSDSEGA-GTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
...++++|+.. |+.+..+++.+.....+. ........++..++..+ ...++.|||||++ |++||++|+
T Consensus 80 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q------rv~laral~ 153 (225)
T PRK10247 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQ------RISLIRNLQ 153 (225)
T ss_pred HhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH------HHHHHHHHh
Confidence 34566677764 455666666542211111 11123345666666632 3456889999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhh
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAE 1187 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~ 1187 (1209)
.+|++|+|||||++||+.++..|..+|.++. ...|.+||+|||+.+++. .||+++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~~~tvii~sh~~~~~~-~~d~i~~l 210 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYV----REQNIAVLWVTHDKDEIN-HADKVITL 210 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEECChHHHH-hCCEEEEE
Confidence 9999999999999999999999999999873 224789999999999996 57776555
No 269
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.52 E-value=2e-14 Score=148.93 Aligned_cols=115 Identities=23% Similarity=0.321 Sum_probs=83.5
Q ss_pred HHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+.+.++++|+.+ |..+..+++.+.....+ ......+..++..++..+ ...++.|||||+| |++||
T Consensus 66 ~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la 139 (190)
T TIGR01166 66 RRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKK------RVAIA 139 (190)
T ss_pred HHhhEEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHH------HHHHH
Confidence 344566777763 44566676654321111 111123345555666543 3455889999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
++|+.+|++++|||||+|||+.++..|..+|.++ ...|.+||+||||+++
T Consensus 140 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~-----~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL-----RAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----HHcCCEEEEEeecccc
Confidence 9999999999999999999999999999999987 2347899999999875
No 270
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.52 E-value=1.9e-14 Score=172.63 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1085 YSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
....++..++..+ ...++.|||||+| |++||++|+.+|++|+|||||+|||+.++..|.+.|.++ ..
T Consensus 115 ~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~ 183 (490)
T PRK10938 115 RCEQLAQQFGITALLDRRFKYLSTGETR------KTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL-----HQ 183 (490)
T ss_pred HHHHHHHHcCCHhhhhCCcccCCHHHHH------HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----Hh
Confidence 3445666676644 3456899999999 999999999999999999999999999999999999987 23
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
.|.+||+||||+.++..+||+++.+..|+|...|+...+
T Consensus 184 ~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 184 SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 478999999999999999999999999999888765443
No 271
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.52 E-value=3.2e-14 Score=155.04 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=86.8
Q ss_pred HHHHHHcCCcc---ccccC-CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1087 YKVLMQTGDAE---LEMRG-RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1087 ~~~~~~~~~~~---~~~~~-~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
..++..++... ...++ .|||||++ |++||++|+.+|++|+|||||++||+.++..|.++|.++ ..
T Consensus 131 ~~~l~~~~l~~~~~~~~~~~~LSgG~~q------rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~ 199 (252)
T CHL00131 131 NEKLKLVGMDPSFLSRNVNEGFSGGEKK------RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL-----MT 199 (252)
T ss_pred HHHHHHcCCchhhhccccccCCCHHHHH------HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----Hh
Confidence 44556666542 23445 59999999 999999999999999999999999999999999999987 23
Q ss_pred CCcEEEEEecCHHHHHHh-hhHhhhhcCcEEeecCCcc
Q 000957 1163 ENFQLIVITHDERFAQLI-GQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 1199 (1209)
.|.+||+||||+.++..+ ||+++..+.|+|...|++.
T Consensus 200 ~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 200 SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 478999999999999987 8999999999999888654
No 272
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.52 E-value=2.1e-14 Score=151.63 Aligned_cols=122 Identities=22% Similarity=0.187 Sum_probs=87.4
Q ss_pred HHhhhcccc--cCC-cchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCC
Q 000957 1054 IIRELWQQT--YRG-QDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNC 1128 (1209)
Q Consensus 1054 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~ 1128 (1209)
.++++++.. |++ +..+++.+.....+.........++..++... ...+..|||||++ |++||++|+.+|
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~laral~~~p 156 (214)
T PRK13543 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKK------RLALARLWLSPA 156 (214)
T ss_pred ceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHH------HHHHHHHHhcCC
Confidence 345565543 232 45555544221111111122334555555443 3455789999999 999999999999
Q ss_pred CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhh
Q 000957 1129 GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHA 1186 (1209)
Q Consensus 1129 ~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~ 1186 (1209)
++|+|||||++||+.++..|..+|..+ ...|.++|+||||..++..+|++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tiii~sH~~~~~~~~~~~i~~ 209 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAH-----LRGGGAALVTTHGAYAAPPVRTRMLT 209 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHH-----HhCCCEEEEEecChhhhhhhcceEEE
Confidence 999999999999999999999999887 23578999999999999988876543
No 273
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=1.4e-14 Score=147.27 Aligned_cols=77 Identities=29% Similarity=0.323 Sum_probs=69.4
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhH
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQR 1183 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~ 1183 (1209)
|||||++ |++||++|+.+|++|+|||||++||+.++..+.++|..+. ..|.++|+||||..++..+||+
T Consensus 96 LS~G~~q------rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 96 LSGGMKQ------RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK-----KEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred cCHHHHH------HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-----HCCCEEEEECCCHHHHHHhCCE
Confidence 9999999 9999999999999999999999999999999999999882 3478999999999999988887
Q ss_pred hhhhcCcE
Q 000957 1184 QHAEKYYR 1191 (1209)
Q Consensus 1184 ~~~~~~~~ 1191 (1209)
++..+.|+
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 76665543
No 274
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.52 E-value=2.2e-14 Score=149.50 Aligned_cols=84 Identities=25% Similarity=0.341 Sum_probs=78.2
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH-h
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL-I 1180 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~-~ 1180 (1209)
..|||||++ |++||++++.+|++++|||||++||+.+...|..+|..+. ..|.++|+|||++.++.. +
T Consensus 103 ~~LS~G~~q------rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~-----~~~~tiii~sh~~~~~~~~~ 171 (200)
T cd03217 103 EGFSGGEKK------RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR-----EEGKSVLIITHYQRLLDYIK 171 (200)
T ss_pred ccCCHHHHH------HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhh
Confidence 579999999 9999999999999999999999999999999999999872 347899999999999988 7
Q ss_pred hhHhhhhcCcEEeecC
Q 000957 1181 GQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~~~~ 1196 (1209)
||+++..+.|++...|
T Consensus 172 ~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 172 PDRVHVLYDGRIVKSG 187 (200)
T ss_pred CCEEEEEECCEEEEEc
Confidence 9999999999998887
No 275
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.51 E-value=2.3e-14 Score=172.07 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=90.8
Q ss_pred HHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1086 SYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1086 ~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
+..++..++.. . ...++.||||||| |++||++|+.+|++|||||||+|||+.++..|.++|.++. .
T Consensus 383 ~~~~l~~~~l~~~~~~~~~~~LSgG~kq------rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-----~ 451 (510)
T PRK15439 383 LERYRRALNIKFNHAEQAARTLSGGNQQ------KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA-----A 451 (510)
T ss_pred HHHHHHHcCCCCCCccCccccCCcHHHH------HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH-----h
Confidence 44566667664 2 3456899999999 9999999999999999999999999999999999999882 3
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
.|.+|||||||++++..+||++++.+.|+|...+.+..
T Consensus 452 ~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 452 QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 57899999999999999999999999999998876543
No 276
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=3.2e-14 Score=152.69 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=104.7
Q ss_pred HHHhhhcccc--c-CCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--Y-RGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++|+.. | ..+..+++.+.....+ .........++..++... ...+..|||||++ |++||+++
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~laral 144 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQ------RVAIARAL 144 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHH------HHHHHHHH
Confidence 3456666653 3 2466666654221111 111123344555666543 3455789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+.+|++++|||||+|||+.++..|...|+.+. ...|.++|+|||++.++..+||+++.+..|++...|+....+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~----~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIR----KEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999872 2347899999999999999999999999999998876554443
No 277
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.51 E-value=2.2e-14 Score=155.95 Aligned_cols=86 Identities=22% Similarity=0.260 Sum_probs=78.6
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh-h
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI-G 1181 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~-~ 1181 (1209)
.|||||++ |++||++|+.+|++|+|||||++||+.++..|.++|..+ ...|.|||+||||+.++..+ |
T Consensus 145 ~LS~G~~q------rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l-----~~~~~tiii~sH~~~~~~~~~~ 213 (248)
T PRK09580 145 GFSGGEKK------RNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL-----RDGKRSFIIVTHYQRILDYIKP 213 (248)
T ss_pred CCCHHHHH------HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----HhCCCEEEEEeCCHHHHHhhhC
Confidence 69999999 999999999999999999999999999999999999887 23478999999999999987 8
Q ss_pred hHhhhhcCcEEeecCCcc
Q 000957 1182 QRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1182 ~~~~~~~~~~v~~~~~~~ 1199 (1209)
|+++.++.|+|...|+..
T Consensus 214 d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 214 DYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred CEEEEEECCeEEEeCCHH
Confidence 999999999998887543
No 278
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.3e-14 Score=172.09 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=102.8
Q ss_pred HHHHhhhcccc--cC-CcchhhhhhccCC--cc----ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1052 NKIIRELWQQT--YR-GQDIDYIRIHSDS--EG----AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
++.++++||.+ |+ .+..+++.+.... .+ .........++..++... ...++.|||||+| |++|
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q------rv~l 151 (501)
T PRK11288 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQ------MVEI 151 (501)
T ss_pred hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHH------HHHH
Confidence 34466777764 33 3566666553210 01 111223445666666543 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
|++|+.+|++|||||||++||+.++..|.++|.++ ...|.+||+||||+.++..+||+++.+..|+|...++
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIREL-----RAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHH-----HhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999987 2357899999999999999999999999999986654
No 279
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.51 E-value=1.7e-14 Score=147.95 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=70.1
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhH
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQR 1183 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~ 1183 (1209)
|||||++ |++||++++.+|++|+|||||++||+.++..+.+.|..+. ..|.++|++||+..++..+|++
T Consensus 105 LS~G~~q------rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sh~~~~~~~~~d~ 173 (182)
T cd03215 105 LSGGNQQ------KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA-----DAGKAVLLISSELDELLGLCDR 173 (182)
T ss_pred cCHHHHH------HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCCE
Confidence 9999999 9999999999999999999999999999999999999872 3478999999999999998888
Q ss_pred hhhhcCcE
Q 000957 1184 QHAEKYYR 1191 (1209)
Q Consensus 1184 ~~~~~~~~ 1191 (1209)
++....|+
T Consensus 174 v~~l~~G~ 181 (182)
T cd03215 174 ILVMYEGR 181 (182)
T ss_pred EEEecCCc
Confidence 87766554
No 280
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.51 E-value=4.9e-14 Score=150.26 Aligned_cols=85 Identities=22% Similarity=0.201 Sum_probs=76.2
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
.+..|||||++ |++||++|+.+|++++|||||++||+.++..|.++|.++ . .+.++|+|||+..++..
T Consensus 136 ~~~~LS~G~~q------r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~-~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 136 GGENLSVGQRQ------LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA-----F-KDCTVLTIAHRLDTIID 203 (221)
T ss_pred CCCcCCHHHHH------HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCCHHHHhh
Confidence 45789999999 999999999999999999999999999999999999987 2 35799999999999975
Q ss_pred hhhHhhhhcCcEEeecCC
Q 000957 1180 IGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~ 1197 (1209)
|++++.+..|++...|+
T Consensus 204 -~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 204 -SDRILVLDKGRVVEFDS 220 (221)
T ss_pred -CCEEEEEECCeEEecCC
Confidence 88888888888877653
No 281
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.51 E-value=3.8e-14 Score=154.98 Aligned_cols=108 Identities=21% Similarity=0.205 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
....++..++.. . ...+..|||||++ |++||++|+.+|++|+|||||++||+.++..+.++|..+. .
T Consensus 130 ~~~~~l~~~gl~~~~~~~~~~~LS~Ge~q------rl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~----~ 199 (268)
T PRK10419 130 RASEMLRAVDLDDSVLDKRPPQLSGGQLQ------RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQ----Q 199 (268)
T ss_pred HHHHHHHHcCCChhHhhCCCccCChHHHH------HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH----H
Confidence 345566666653 2 3455789999999 9999999999999999999999999999999999999873 2
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
..|.++|+|||+..++..+||+++....|+|...|+...++
T Consensus 200 ~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 200 QFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 34789999999999999999999999999999888766654
No 282
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.51 E-value=3.2e-14 Score=149.91 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=86.6
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++++.. |+ .+..+++.+..... .......+..++..++... ...+..|||||++ |++||++|
T Consensus 76 ~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q------r~~laral 149 (206)
T TIGR03608 76 EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQ------RVALARAI 149 (206)
T ss_pred hCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHH------HHHHHHHH
Confidence 4456666654 33 46666665422111 1111223445666666543 3455789999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhh
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQH 1185 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~ 1185 (1209)
+.+|++|+|||||+|||+.++..|.+.|..+. ..|.++|+|||+..++. +|++++
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tii~~sh~~~~~~-~~d~i~ 204 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELN-----DEGKTIIIVTHDPEVAK-QADRVI 204 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH-----hcCCEEEEEeCCHHHHh-hcCEEE
Confidence 99999999999999999999999999999872 34789999999999764 566543
No 283
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=2.9e-14 Score=171.36 Aligned_cols=105 Identities=21% Similarity=0.196 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.+..++..++.. . ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..|.++|..+ .
T Consensus 384 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kq------rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-----~ 452 (506)
T PRK13549 384 TILESIQRLKVKTASPELAIARLSGGNQQ------KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL-----V 452 (506)
T ss_pred HHHHHHHhcCccCCCcccccccCCHHHHH------HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH-----H
Confidence 345567777763 2 3456899999999 999999999999999999999999999999999999987 2
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
..|.+||+||||+.++..+||+++++..|+|...+++..
T Consensus 453 ~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 453 QQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 358899999999999999999999999999998876544
No 284
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.2e-14 Score=171.46 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1085 YSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
.+..++..+|... ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..|.++|.++ ..
T Consensus 125 ~~~~~l~~~gl~~~~~~~~~~LSgG~~q------rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-----~~ 193 (510)
T PRK09700 125 RAAMMLLRVGLKVDLDEKVANLSISHKQ------MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL-----RK 193 (510)
T ss_pred HHHHHHHHcCCCCCcccchhhCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----Hh
Confidence 3445666666543 3456899999999 999999999999999999999999999999999999988 23
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
.|.+|||||||+.++..+||++++...|+|...|++..+
T Consensus 194 ~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 194 EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 478999999999999999999999999999888766544
No 285
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.6e-14 Score=154.49 Aligned_cols=141 Identities=17% Similarity=0.209 Sum_probs=103.9
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc----cchhHHHHHHHHcCCc----c--ccccCCCChhhhhhhhHHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA----GTRSYSYKVLMQTGDA----E--LEMRGRCSAGQKVLASLIIR 1117 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~--~~~~~~lSgG~k~l~sl~ir 1117 (1209)
.+...++++|+.. |+++..+++.+.....+. .........+...+.. . ...++.|||||++ |
T Consensus 96 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q------r 169 (265)
T PRK14252 96 EVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQ------R 169 (265)
T ss_pred HHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHH------H
Confidence 3455567777764 556666766543211110 0011222333344432 1 2345789999999 9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++||++|+.+|++|+|||||++||+.++..|...|..+ .. +.+||+|||+.+++..+||+++....|+|...|+
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-----~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDL-----KN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----Hh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999987 22 5799999999999999999999999999998886
Q ss_pred ccccc
Q 000957 1198 QHSII 1202 (1209)
Q Consensus 1198 ~~s~~ 1202 (1209)
...+.
T Consensus 244 ~~~~~ 248 (265)
T PRK14252 244 TDTIF 248 (265)
T ss_pred HHHHH
Confidence 65554
No 286
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.50 E-value=3.6e-14 Score=170.36 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=104.3
Q ss_pred HHhhhcccc--cC-CcchhhhhhccCCc---c----ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1054 IIRELWQQT--YR-GQDIDYIRIHSDSE---G----AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1054 ~~~~~~~~~--~~-~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.++++||.+ |+ -+..+++.+..... + ...+..+..++..++..+ ...++.|||||+| |++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q------rv~la 153 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQ------MVEIA 153 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH------HHHHH
Confidence 456677754 22 35666665432110 0 111223445666666544 3456899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|+|||||++||+.++..|.++|..+ ...|.+||+||||.+++..+||++++.+.|+|...++...+
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-----~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIREL-----KSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999988 23478999999999999999999999999999888765443
No 287
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.8e-14 Score=170.14 Aligned_cols=105 Identities=12% Similarity=0.150 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
....++..++.. . ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..|.++|.++ .
T Consensus 375 ~~~~~l~~~~l~~~~~~~~~~~LSgGq~q------rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-----~ 443 (501)
T PRK11288 375 NADRFIRSLNIKTPSREQLIMNLSGGNQQ------KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL-----A 443 (501)
T ss_pred HHHHHHHhcCcccCCccCccccCCHHHHH------HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH-----H
Confidence 345566667652 2 4566899999999 999999999999999999999999999999999999988 3
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
..|.+|||||||++++..+||+++....|+|...|+...
T Consensus 444 ~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 444 AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred hCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 357899999999999999999999999999998875543
No 288
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.50 E-value=3.5e-14 Score=148.83 Aligned_cols=115 Identities=25% Similarity=0.249 Sum_probs=84.0
Q ss_pred HHhhhcccc--cC-CcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCC
Q 000957 1054 IIRELWQQT--YR-GQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNC 1128 (1209)
Q Consensus 1054 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~ 1128 (1209)
.++++++.. ++ .+..+++.+.....+......+..++..++... ...++.|||||++ |++||++|+.+|
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q------rl~la~al~~~p 148 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQR------RVALARLWLTRA 148 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHH------HHHHHHHHhcCC
Confidence 344555443 22 356666654322111112234455666776643 3345789999999 999999999999
Q ss_pred CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1129 GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1129 ~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
++++|||||++||+.++..|..+|.++ ...|.++|+||||..++..
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQH-----AEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHH-----HHCCCEEEEEecChhhhcc
Confidence 999999999999999999999999987 2347899999999999984
No 289
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.50 E-value=3.7e-14 Score=146.93 Aligned_cols=82 Identities=24% Similarity=0.247 Sum_probs=74.7
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH-HHHHhh
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER-FAQLIG 1181 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~-~~~~~~ 1181 (1209)
.|||||++ |++||++|+.+|++++|||||++||+.++..+.++|..+ ...|.++|+|||+.. .+..+|
T Consensus 111 ~LS~G~~q------rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~~~~tiii~sh~~~~~~~~~~ 179 (194)
T cd03213 111 GLSGGERK------RVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL-----ADTGRTIICSIHQPSSEIFELF 179 (194)
T ss_pred cCCHHHHH------HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-----HhCCCEEEEEecCchHHHHHhc
Confidence 79999999 999999999999999999999999999999999999987 234789999999996 788899
Q ss_pred hHhhhhcCcEEeec
Q 000957 1182 QRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1182 ~~~~~~~~~~v~~~ 1195 (1209)
|++++...|+|...
T Consensus 180 d~v~~l~~G~i~~~ 193 (194)
T cd03213 180 DKLLLLSQGRVIYF 193 (194)
T ss_pred CEEEEEeCCEEEec
Confidence 99999888888654
No 290
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=3.4e-14 Score=147.02 Aligned_cols=83 Identities=22% Similarity=0.192 Sum_probs=74.0
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH-HHHHhh
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER-FAQLIG 1181 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~-~~~~~~ 1181 (1209)
.|||||++ |++||++++.+|++|+|||||++||+.++..+...|..+ ...|.++|+|||+.+ .+..+|
T Consensus 108 ~LSgGe~q------rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~-----~~~~~tiiivtH~~~~~~~~~~ 176 (192)
T cd03232 108 GLSVEQRK------RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL-----ADSGQAILCTIHQPSASIFEKF 176 (192)
T ss_pred cCCHHHhH------HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHH-----HHcCCEEEEEEcCChHHHHhhC
Confidence 79999999 999999999999999999999999999999999999987 234789999999998 477888
Q ss_pred hHhhhhcC-cEEeecC
Q 000957 1182 QRQHAEKY-YRVAKDD 1196 (1209)
Q Consensus 1182 ~~~~~~~~-~~v~~~~ 1196 (1209)
|+++.+.. |+|...|
T Consensus 177 d~i~~l~~~g~i~~~g 192 (192)
T cd03232 177 DRLLLLKRGGKTVYFG 192 (192)
T ss_pred CEEEEEcCCCeEEeCC
Confidence 88888877 7776543
No 291
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.49 E-value=3.1e-14 Score=175.34 Aligned_cols=144 Identities=18% Similarity=0.243 Sum_probs=108.5
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCC-ccccc------hhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDS-EGAGT------RSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl 1114 (1209)
...+++.+++++|.+ |+|+..++|.+.... ..... .......+...+ +-+ . +....|||||+|
T Consensus 412 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ---- 487 (582)
T PRK11176 412 LASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ---- 487 (582)
T ss_pred HHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH----
Confidence 456778899999997 689999999874321 11110 011122222221 111 1 112469999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++|||+|+++|++|+|||||++||+.+...+.+.|..+ ..+.|+|+|||++..+. .||+++....|+|..
T Consensus 488 --Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~------~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 488 --RIAIARALLRDSPILILDEATSALDTESERAIQAALDEL------QKNRTSLVIAHRLSTIE-KADEILVVEDGEIVE 558 (582)
T ss_pred --HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH------hCCCEEEEEecchHHHH-hCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999886 24689999999998876 599999999999999
Q ss_pred cCCccccccc
Q 000957 1195 DDHQHSIIEA 1204 (1209)
Q Consensus 1195 ~~~~~s~~~~ 1204 (1209)
.|+....+..
T Consensus 559 ~g~~~~l~~~ 568 (582)
T PRK11176 559 RGTHAELLAQ 568 (582)
T ss_pred eCCHHHHHhC
Confidence 9987766643
No 292
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.49 E-value=3.9e-14 Score=150.20 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=79.7
Q ss_pred HHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1089 VLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1089 ~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
++..++... ...++.|||||+| |++||++|+.+| ++|+|||||++||+.++..|.+.|..+ ...
T Consensus 120 ~l~~~~l~~~~~~~~~~~LSgG~~q------rv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~-----~~~ 188 (226)
T cd03270 120 FLVDVGLGYLTLSRSAPTLSGGEAQ------RIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRL-----RDL 188 (226)
T ss_pred HHHHCCCCcccccCccCcCCHHHHH------HHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHH-----HhC
Confidence 444555432 3456899999999 999999999987 599999999999999999999999987 235
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhh------cCcEEeecC
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAE------KYYRVAKDD 1196 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~ 1196 (1209)
|.++|+||||++++. +||+++.+ +.|+|+.+|
T Consensus 189 g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 189 GNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEEecC
Confidence 789999999999975 89998888 777776654
No 293
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=5e-14 Score=169.37 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=105.8
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCc-----c-ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSE-----G-AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+.++++||.+ |+ .+..+++.+..... . ......+..++..++... ...++.||||||| |++||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq------rv~la 155 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQ------LVEIA 155 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHH------HHHHH
Confidence 3467777764 33 35666665532211 0 011123445666666543 3456899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
++|+.+|++|||||||++||+.++..|.++|.++ ...|.+||+||||+.++..+||++++.+.|+|+..|+...+
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-----~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDL-----KAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999988 23578999999999999999999999999999888765544
No 294
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=3.3e-14 Score=173.51 Aligned_cols=146 Identities=19% Similarity=0.219 Sum_probs=113.5
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCcc------ccchhHHHHHHHHcC-Ccc---ccccCCCChhhhhhhhH
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEG------AGTRSYSYKVLMQTG-DAE---LEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~---~~~~~~lSgG~k~l~sl 1114 (1209)
....++..++-++|.+ |.++..++|.+...... +.+....+..+..++ +.+ .+...+|||||||
T Consensus 421 ~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQ---- 496 (1228)
T KOG0055|consen 421 NLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQ---- 496 (1228)
T ss_pred chHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHH----
Confidence 3456777889999987 78889999987543211 111112233333222 111 1233479999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|+||||||..+|++|+|||||++||+.+...+.++|... ..|.|-|||+|++..+.. +|.+.+++.|.|+.
T Consensus 497 --RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~------~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 497 --RIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA------SKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVE 567 (1228)
T ss_pred --HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh------hcCCeEEEEeeehhhhhc-cCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999876 467899999999999998 99999999999999
Q ss_pred cCCcccccccc
Q 000957 1195 DDHQHSIIEAQ 1205 (1209)
Q Consensus 1195 ~~~~~s~~~~~ 1205 (1209)
.|+....+..+
T Consensus 568 ~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 568 QGTHDELIALG 578 (1228)
T ss_pred ecCHHHHHhcc
Confidence 99888877654
No 295
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.49 E-value=5.3e-14 Score=168.67 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=103.3
Q ss_pred HHHhhhcccc--c-CCcchhhhhhccCCc-c---c--cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1053 KIIRELWQQT--Y-RGQDIDYIRIHSDSE-G---A--GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1053 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
..++++||.. | ..+..+++.+..... + . ........++..++... ...++.|||||+| |++||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q------rv~lA 146 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQ------MIEIA 146 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH------HHHHH
Confidence 3456677764 2 235566655421100 1 0 01123445566666543 3456899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
++|+.+|++|||||||+|||+.++..|.++|.++ ...|.+||+||||.+++..+||+++++..|+|...+++..
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-----~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL-----KERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 9999999999999999999999999999999987 2357899999999999999999999999999998876544
No 296
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.49 E-value=3.2e-14 Score=142.64 Aligned_cols=77 Identities=25% Similarity=0.310 Sum_probs=68.2
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhH
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQR 1183 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~ 1183 (1209)
|||||++ |++||++|+.+|++++|||||++||+.++..+.+.|..+. ...+.++|+|||++.++..+|++
T Consensus 72 LSgGq~q------rv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~----~~~~~tiiivsH~~~~~~~~~d~ 141 (177)
T cd03222 72 LSGGELQ------RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS----EEGKKTALVVEHDLAVLDYLSDR 141 (177)
T ss_pred CCHHHHH------HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH----HcCCCEEEEEECCHHHHHHhCCE
Confidence 9999999 9999999999999999999999999999999999999873 22247999999999999988888
Q ss_pred hhhhcCc
Q 000957 1184 QHAEKYY 1190 (1209)
Q Consensus 1184 ~~~~~~~ 1190 (1209)
++..+..
T Consensus 142 i~~l~~~ 148 (177)
T cd03222 142 IHVFEGE 148 (177)
T ss_pred EEEEcCC
Confidence 7655443
No 297
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.49 E-value=6.2e-14 Score=149.94 Aligned_cols=80 Identities=28% Similarity=0.293 Sum_probs=69.8
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..+..|||||++ |++||++|+.+|++|||||||++||+.++..|...|.++ .. +.++|+||||+.++.
T Consensus 146 ~~~~~LSgG~~q------rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~-~~tii~~sh~~~~~~ 213 (226)
T cd03248 146 EKGSQLSGGQKQ------RVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW-----PE-RRTVLVIAHRLSTVE 213 (226)
T ss_pred cCCCcCCHHHHH------HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----cC-CCEEEEEECCHHHHH
Confidence 345789999999 999999999999999999999999999999999999987 22 579999999999996
Q ss_pred HhhhHhhhhcCcE
Q 000957 1179 LIGQRQHAEKYYR 1191 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~ 1191 (1209)
. ||+++..+.|+
T Consensus 214 ~-~d~i~~l~~g~ 225 (226)
T cd03248 214 R-ADQILVLDGGR 225 (226)
T ss_pred h-CCEEEEecCCc
Confidence 4 77776665544
No 298
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.49 E-value=4.3e-14 Score=152.53 Aligned_cols=89 Identities=27% Similarity=0.282 Sum_probs=80.7
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
.+..|||||++ |++||++++.+|++|+|||||+|||+.++..|...|..+ . .|.+||+|||+..++.
T Consensus 136 ~~~~LS~G~~q------rv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-----~-~g~~vi~~sh~~~~~~- 202 (238)
T cd03249 136 RGSQLSGGQKQ------RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA-----M-KGRTTIVIAHRLSTIR- 202 (238)
T ss_pred CCccCCHHHHH------HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCCHHHHh-
Confidence 45789999999 999999999999999999999999999999999999887 3 5789999999999997
Q ss_pred hhhHhhhhcCcEEeecCCcccc
Q 000957 1180 IGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
+||+++....|++...++...+
T Consensus 203 ~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 203 NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred hCCEEEEEECCEEEEeCCHHHH
Confidence 8999999999999888765443
No 299
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.49 E-value=5.2e-14 Score=173.30 Aligned_cols=140 Identities=20% Similarity=0.213 Sum_probs=109.0
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcC----------Ccc--c-cccCCCChhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTG----------DAE--L-EMRGRCSAGQKVL 1111 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--~-~~~~~lSgG~k~l 1111 (1209)
....+++.+++++|.+ |+||..++|.+..+... .....++...| +.+ . .....|||||+|
T Consensus 409 ~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ- 483 (592)
T PRK10790 409 SHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISE----EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ- 483 (592)
T ss_pred CHHHHHhheEEEccCCccccchHHHHHHhCCCCCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH-
Confidence 3567788999999998 69999999988642111 11222222222 111 1 122469999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
|++|||||+.+||+|+|||||++||+.+...+.+.|..+. .+.|+|+|||++..+. .||+++.+..|+
T Consensus 484 -----RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~------~~~tvIivtHr~~~l~-~~D~ii~l~~G~ 551 (592)
T PRK10790 484 -----LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR------EHTTLVVIAHRLSTIV-EADTILVLHRGQ 551 (592)
T ss_pred -----HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh------CCCEEEEEecchHHHH-hCCEEEEEECCE
Confidence 9999999999999999999999999999999999998862 3589999999998887 589999999999
Q ss_pred EeecCCcccccc
Q 000957 1192 VAKDDHQHSIIE 1203 (1209)
Q Consensus 1192 v~~~~~~~s~~~ 1203 (1209)
+...|+....+.
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999987766553
No 300
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.49 E-value=5.6e-14 Score=140.81 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=74.9
Q ss_pred HHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccC--CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1088 KVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLN--CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1088 ~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~--~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
.++..++... ...+..|||||++ |++||++++.+ |++++|||||++||+.++..|.+.|.++. .
T Consensus 69 ~~l~~~~L~~~~~~~~~~~LSgGq~q------rl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~-----~ 137 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLSTLSGGELQ------RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI-----D 137 (176)
T ss_pred HHHHHcCCCccccCCCcCcCCHHHHH------HHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-----h
Confidence 3555555432 3455789999999 99999999999 99999999999999999999999999872 3
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
.|.+||+|||+..++. .||+++.+..|.
T Consensus 138 ~g~tvIivSH~~~~~~-~~d~i~~l~~g~ 165 (176)
T cd03238 138 LGNTVILIEHNLDVLS-SADWIIDFGPGS 165 (176)
T ss_pred CCCEEEEEeCCHHHHH-hCCEEEEECCCC
Confidence 5789999999999974 577665554433
No 301
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.48 E-value=5.6e-14 Score=168.70 Aligned_cols=106 Identities=15% Similarity=0.168 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.+..++..++.. . ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..|.++|..+.
T Consensus 374 ~~~~~l~~~~l~~~~~~~~~~~LSgGekq------rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----- 442 (501)
T PRK10762 374 AVSDFIRLFNIKTPSMEQAIGLLSGGNQQ------KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK----- 442 (501)
T ss_pred HHHHHHHhcCCCCCCccCchhhCCHHHHH------HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH-----
Confidence 345566666663 2 4556899999999 9999999999999999999999999999999999999982
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
..|.+||+||||++++..+||++++...|+|...++...+
T Consensus 443 ~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 443 AEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 3488999999999999999999999999999887765443
No 302
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.48 E-value=7e-14 Score=148.59 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=94.3
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCCcc----ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDSEG----AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
+++.++++|+.. |+ .+..+++.+...... .........++..++..+ ...+..|||||++ |++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q------rv~la 153 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQ------RVAIA 153 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH------HHHHH
Confidence 445566777664 33 466666654321111 111223445666666543 3455789999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
++|+.+|++++|||||++||+.++..|...|..+. .+.|.++|+|||+++++ .+||+++.+..|++
T Consensus 154 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA----REQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH----HHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 99999999999999999999999999999999873 23478999999999965 57777776665554
No 303
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.48 E-value=6.5e-14 Score=168.48 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=89.5
Q ss_pred HHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1086 SYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1086 ~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
...++..++... ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..|.++|.++ ..
T Consensus 121 ~~~~l~~~~l~~~~~~~~~~~LSgG~~q------rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-----~~ 189 (500)
T TIGR02633 121 AKNLLRELQLDADNVTRPVGDYGGGQQQ------LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-----KA 189 (500)
T ss_pred HHHHHHHcCCCCCcccCchhhCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----Hh
Confidence 445666666543 2346899999999 999999999999999999999999999999999999988 23
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
.|.+||+||||.+++..+||++++++.|+|...+++.
T Consensus 190 ~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 190 HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc
Confidence 5789999999999999999999999999998877554
No 304
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.48 E-value=8.4e-14 Score=145.42 Aligned_cols=121 Identities=21% Similarity=0.188 Sum_probs=87.7
Q ss_pred HHHHhhhcccc--c-CCcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1052 NKIIRELWQQT--Y-RGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
.+.++++++.. + ..+..+++.+..... .......++..++... ...+..|||||++ |++||++|+.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~laral~~ 142 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADH---SDEQVEEALARVGLNGFEDRPVAQLSAGQQR------RVALARLLLS 142 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccc---cHHHHHHHHHHcCChhhhcCchhhCCHHHHH------HHHHHHHHhc
Confidence 34455666543 1 245666665532111 1223344555565543 3345789999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhh
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHA 1186 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~ 1186 (1209)
+|++++|||||++||+.++..|.+.|.++ ...|.++|||||+...+...|++++.
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~~g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGH-----CARGGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----HhCCCEEEEEecCchhhhhccceeEe
Confidence 99999999999999999999999999887 23478999999999888777766543
No 305
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=9.1e-07 Score=103.73 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=50.2
Q ss_pred CHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Q 000957 731 TMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDL-SNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLD 809 (1209)
Q Consensus 731 ~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l-~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~ 809 (1209)
.+..+..++..+..++..+..+.-.+...+..++..+ ..+..+++.+...+..+... .....+.....++....
T Consensus 786 ~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~-----~~~~el~~~~~el~~~~ 860 (1200)
T KOG0964|consen 786 RLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDS-----SRRSELELEKSELESEE 860 (1200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-----cchhhhhHHHHHHHHHH
Confidence 4555666777777777777666666666665555443 33444555554444333221 11222233333333344
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 000957 810 LDEKLLAEASGPLSKEKEKLLSDYNDLKVK 839 (1209)
Q Consensus 810 ~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~ 839 (1209)
.+++....++..++..++...+...+....
T Consensus 861 ~~~e~~~~el~~l~~~i~~~~a~~~~~~~~ 890 (1200)
T KOG0964|consen 861 KRVEAAILELKTLQDSIDKKKAEIKEIKKE 890 (1200)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 306
>PRK13409 putative ATPase RIL; Provisional
Probab=99.48 E-value=5.8e-14 Score=168.91 Aligned_cols=129 Identities=23% Similarity=0.274 Sum_probs=96.2
Q ss_pred Hhhhcccc---cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCC
Q 000957 1055 IRELWQQT---YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCG 1129 (1209)
Q Consensus 1055 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~ 1129 (1209)
+++++|.. +..+..+++.+...... .......++..++... ...++.|||||+| |++||++|+.+|+
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~Q------RvaiAraL~~~p~ 473 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDLG--SSYYKSEIIKPLQLERLLDKNVKDLSGGELQ------RVAIAACLSRDAD 473 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhcC--hHHHHHHHHHHCCCHHHHhCCcccCCHHHHH------HHHHHHHHhcCCC
Confidence 55666654 23456666554211111 1112345666666543 3556899999999 9999999999999
Q ss_pred eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1130 ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1130 ~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
+|+|||||+|||+.++..+.++|+++. ...|.++||||||+.++..+||++++.. +++...|
T Consensus 474 llLLDEPt~~LD~~~~~~l~~~l~~l~----~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g 535 (590)
T PRK13409 474 LYLLDEPSAHLDVEQRLAVAKAIRRIA----EEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHG 535 (590)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeee
Confidence 999999999999999999999999983 3347899999999999999999988775 3555544
No 307
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=4.1e-14 Score=144.61 Aligned_cols=76 Identities=30% Similarity=0.417 Sum_probs=67.7
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhH
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQR 1183 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~ 1183 (1209)
|||||++ |++||++|+.+|++++|||||+|||+.++..|..+|..+. ...|.++|+||||..++..+||+
T Consensus 101 lS~G~~q------r~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~----~~~~~tiii~sH~~~~~~~~~d~ 170 (178)
T cd03229 101 LSGGQQQ------RVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ----AQLGITVVLVTHDLDEAARLADR 170 (178)
T ss_pred CCHHHHH------HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhcCE
Confidence 9999999 9999999999999999999999999999999999999883 22368999999999999988877
Q ss_pred hhhhcC
Q 000957 1184 QHAEKY 1189 (1209)
Q Consensus 1184 ~~~~~~ 1189 (1209)
++.+..
T Consensus 171 i~~l~~ 176 (178)
T cd03229 171 VVVLRD 176 (178)
T ss_pred EEEEeC
Confidence 665543
No 308
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.48 E-value=6.5e-14 Score=168.49 Aligned_cols=103 Identities=19% Similarity=0.182 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.+..++..++... ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..|.++|..+ .
T Consensus 382 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkq------rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l-----~ 450 (500)
T TIGR02633 382 IIGSAIQRLKVKTASPFLPIGRLSGGNQQ------KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL-----A 450 (500)
T ss_pred HHHHHHHhcCccCCCccCccccCCHHHHH------HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH-----H
Confidence 3455666776642 3456899999999 999999999999999999999999999999999999988 2
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
..|.+|||||||+.++..+||++++...|+|..+.+.
T Consensus 451 ~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~ 487 (500)
T TIGR02633 451 QEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN 487 (500)
T ss_pred hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 3588999999999999999999999999999877643
No 309
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.48 E-value=8.5e-14 Score=169.71 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=109.2
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc-----------c-cccCCCChhhhhhhh
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE-----------L-EMRGRCSAGQKVLAS 1113 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~lSgG~k~l~s 1113 (1209)
...+++.+++++|.+ |+|+..+++.+...... .......+...+..+ . +....|||||||
T Consensus 409 ~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~---~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrq--- 482 (574)
T PRK11160 409 EAALRQAISVVSQRVHLFSATLRDNLLLAAPNAS---DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQR--- 482 (574)
T ss_pred HHHHHhheeEEcccchhhcccHHHHhhcCCCccC---HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHH---
Confidence 456778889999987 68999999877432111 112223333332221 1 123569999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1114 LIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1114 l~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|++|||+++.+|++|+|||||++||+.+...+.+.|..+ ..+.|+|+|||+...+. .||+++.+..|+|.
T Consensus 483 ---RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~------~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~ 552 (574)
T PRK11160 483 ---RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH------AQNKTVLMITHRLTGLE-QFDRICVMDNGQII 552 (574)
T ss_pred ---HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH------cCCCEEEEEecChhHHH-hCCEEEEEeCCeEE
Confidence 999999999999999999999999999999999999887 24789999999999986 49999999999999
Q ss_pred ecCCcccccccc
Q 000957 1194 KDDHQHSIIEAQ 1205 (1209)
Q Consensus 1194 ~~~~~~s~~~~~ 1205 (1209)
..|+..+.+...
T Consensus 553 ~~g~~~~l~~~~ 564 (574)
T PRK11160 553 EQGTHQELLAQQ 564 (574)
T ss_pred EeCCHHHHHhcC
Confidence 988776665443
No 310
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.7e-13 Score=150.23 Aligned_cols=84 Identities=31% Similarity=0.367 Sum_probs=76.9
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
+..||||||+ ||+||.+...+|.+|||||||++||..+...|..+|+.+ +..||+||||.+|+..+
T Consensus 480 i~~LSGGQKs------rvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--------~GGVv~VSHd~~fi~~~ 545 (582)
T KOG0062|consen 480 IASLSGGQKS------RVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--------NGGVVLVSHDEEFISSL 545 (582)
T ss_pred ccccCCcchh------HHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--------CCcEEEEECcHHHHhhc
Confidence 3579999999 999999999999999999999999999999999999986 34799999999999999
Q ss_pred hhHhhhhcCcEEeecCCc
Q 000957 1181 GQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~~~~~~ 1198 (1209)
|+.+++-..|+|+....+
T Consensus 546 c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 546 CKELWVVEDGKVTPIEGG 563 (582)
T ss_pred CceeEEEcCCcEEeeecc
Confidence 999999999999876544
No 311
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.48 E-value=7.8e-14 Score=171.39 Aligned_cols=143 Identities=20% Similarity=0.254 Sum_probs=106.8
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccc------hhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhH
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGT------RSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl 1114 (1209)
....+++.+++++|.+ |+|+..+++.+......... .......+...+ +-+ . +....|||||+|
T Consensus 403 ~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q---- 478 (588)
T PRK13657 403 TRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ---- 478 (588)
T ss_pred CHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH----
Confidence 3467788899999998 68999999977532111110 011122222221 111 1 122469999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++|||+|+++|++++|||||++||+.+...+.+.|... ..+.|+|+|||+...+. .||+++.+..|++..
T Consensus 479 --RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~------~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 479 --RLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL------MKGRTTFIIAHRLSTVR-NADRILVFDNGRVVE 549 (588)
T ss_pred --HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH------hcCCEEEEEEecHHHHH-hCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988876 24689999999999875 699999999999998
Q ss_pred cCCccccc
Q 000957 1195 DDHQHSII 1202 (1209)
Q Consensus 1195 ~~~~~s~~ 1202 (1209)
.|+....+
T Consensus 550 ~g~~~~l~ 557 (588)
T PRK13657 550 SGSFDELV 557 (588)
T ss_pred eCCHHHHH
Confidence 88665554
No 312
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.48 E-value=1.1e-06 Score=104.07 Aligned_cols=234 Identities=16% Similarity=0.216 Sum_probs=138.4
Q ss_pred cccccchhhhhhhhhcCCHHhhhhhe----------------eeccCCCCCCCC-CchhhHHhhHHhhhhhhhHHHHHHH
Q 000957 24 SYRCADMDREVPALMGVSKAILENVI----------------FVHQDEANWPLQ-DPSTLKKKFDDIFSATRYTKALEVI 86 (1209)
Q Consensus 24 s~k~~~~d~~~~~~lgvs~ail~~Vi----------------fchQees~wpl~-ep~~Lkk~fDdIf~a~ky~kale~l 86 (1209)
-+||.+-|.. |.|+==.+|+=..+| |.|||=-.=+=. .|-.|..-=.--.|+...-..++.|
T Consensus 105 ItR~I~~~k~-S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL 183 (1072)
T KOG0979|consen 105 ITRLISRDKE-SKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIEL 183 (1072)
T ss_pred EEEEEeecCC-cceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHH
Confidence 3788888887 777744444333333 666663222111 4666666666666666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 87 KKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRKMQDQI 166 (1209)
Q Consensus 87 k~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~~ 166 (1209)
.++|.+-..-...+...-..+...+++..++...++. +.+. ......|+-+. ....+-.|...-.++
T Consensus 184 ~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~-------~rer-~~~~~~Ie~l~-----~k~~~v~y~~~~~ey 250 (1072)
T KOG0979|consen 184 MDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER-------VRER-ERKKSKIELLE-----KKKKWVEYKKHDREY 250 (1072)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHH-HHHHHHHHHHH-----HhccccchHhhhHHH
Confidence 5555544443333333333333222222222222222 2111 01111111111 112344566666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000957 167 STMTARRSTLFEQQQKQYAALAEEIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITN 246 (1209)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 246 (1209)
+.+...+.-++.++..+...+. .+....++|+....+...++......+.+...++...-..+.........+......
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~-pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~ 329 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIK-PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLES 329 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777 788888888888888888888888888888888888887877777777777777777
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHc
Q 000957 247 LLSEAGAHMSRMNERDSTIQKLFARH 272 (1209)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1209)
+......++..+......+-.+....
T Consensus 330 lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 330 LKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77777776666666666655544443
No 313
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.47 E-value=9.8e-14 Score=145.84 Aligned_cols=89 Identities=20% Similarity=0.174 Sum_probs=78.6
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..++.|||||++ |++||++|+.+|++++|||||++||+.+...+...|.... .+.++|+|||++.++.
T Consensus 100 ~~~~~lS~G~~q------rv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~------~~~~ii~vsH~~~~~~ 167 (213)
T PRK15177 100 DRVSEYSVTMKT------HLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL------QQKGLIVLTHNPRLIK 167 (213)
T ss_pred chHhhcCHHHHH------HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh------hCCcEEEEECCHHHHH
Confidence 455789999999 9999999999999999999999999999999988776542 2346999999999999
Q ss_pred HhhhHhhhhcCcEEeecCCcc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
.+||++++++.|+|...++..
T Consensus 168 ~~~d~i~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 168 EHCHAFGVLLHGKITMCEDLA 188 (213)
T ss_pred HhcCeeEEEECCeEEEeCCHH
Confidence 999999999999999887543
No 314
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=6.3e-14 Score=151.12 Aligned_cols=89 Identities=27% Similarity=0.302 Sum_probs=80.3
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
+..|||||++ |++||++|+.+|++|+|||||+|||+.++..|..+|..+ .. |.+||+|||+..++..
T Consensus 135 ~~~LS~G~~~------rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-----~~-~~tiii~sh~~~~~~~- 201 (236)
T cd03253 135 GLKLSGGEKQ------RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV-----SK-GRTTIVIAHRLSTIVN- 201 (236)
T ss_pred CCcCCHHHHH------HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-----cC-CCEEEEEcCCHHHHHh-
Confidence 4689999999 999999999999999999999999999999999999887 34 8899999999999975
Q ss_pred hhHhhhhcCcEEeecCCccccc
Q 000957 1181 GQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
||+++..+.|++...|+...+.
T Consensus 202 ~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 202 ADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred CCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999998887655443
No 315
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.47 E-value=7.3e-14 Score=170.85 Aligned_cols=145 Identities=20% Similarity=0.249 Sum_probs=114.4
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCc------cccchhHHHHHHHHcCC-cc--cc-ccCCCChhhhhhhhH
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSE------GAGTRSYSYKVLMQTGD-AE--LE-MRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~--~~-~~~~lSgG~k~l~sl 1114 (1209)
....+++.++.++|.+ |.||..++|.+..... .+.+....+..++..+. .+ .. ....|||||||
T Consensus 397 ~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQ---- 472 (567)
T COG1132 397 SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ---- 472 (567)
T ss_pred CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHH----
Confidence 4567889999999998 7899999998864321 11122234444444432 11 12 22479999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++|||||..+||+|+|||||++||+.+-..+.+.|..+. .|.|+|+|+|.+..+.. ||++.++..|+|..
T Consensus 473 --rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~------~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e 543 (567)
T COG1132 473 --RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL------KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVE 543 (567)
T ss_pred --HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh------cCCEEEEEeccHhHHHh-CCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999772 45689999999999988 99999999999999
Q ss_pred cCCccccccc
Q 000957 1195 DDHQHSIIEA 1204 (1209)
Q Consensus 1195 ~~~~~s~~~~ 1204 (1209)
.|+..+.+..
T Consensus 544 ~G~h~eLl~~ 553 (567)
T COG1132 544 RGTHEELLAK 553 (567)
T ss_pred ecCHHHHHHc
Confidence 9988776654
No 316
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.47 E-value=9.1e-14 Score=173.89 Aligned_cols=137 Identities=22% Similarity=0.265 Sum_probs=107.2
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc------------c-cccCCCChhhhhhh
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE------------L-EMRGRCSAGQKVLA 1112 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~lSgG~k~l~ 1112 (1209)
...+++.+++++|.+ |+||..++|.+... .. ......++...+..+ . +....|||||||
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~---~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ-- 595 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LT---LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ-- 595 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCCC-CC---HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH--
Confidence 557888999999998 68999999987532 11 112222333222211 1 122469999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
|++|||||+++|++|+|||||++||+.+...+.+.|..+ +.|+|+|||++..+.. ||+++++..|+|
T Consensus 596 ----RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--------~~T~IiItHr~~~i~~-~D~Iivl~~G~i 662 (686)
T TIGR03797 596 ----RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--------KVTRIVIAHRLSTIRN-ADRIYVLDAGRV 662 (686)
T ss_pred ----HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--------CCeEEEEecChHHHHc-CCEEEEEECCEE
Confidence 999999999999999999999999999999999988764 3699999999999864 999999999999
Q ss_pred eecCCcccccc
Q 000957 1193 AKDDHQHSIIE 1203 (1209)
Q Consensus 1193 ~~~~~~~s~~~ 1203 (1209)
+..|+....+.
T Consensus 663 v~~G~~~~Ll~ 673 (686)
T TIGR03797 663 VQQGTYDELMA 673 (686)
T ss_pred EEECCHHHHHh
Confidence 99997766554
No 317
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.47 E-value=9.1e-14 Score=174.15 Aligned_cols=144 Identities=22% Similarity=0.268 Sum_probs=109.0
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCcccc------chhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhHH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAG------TRSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl~ 1115 (1209)
...+++.+++++|.+ |+|+..++|.+........ ........+...+ +.+ . +....|||||||
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ----- 608 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ----- 608 (694)
T ss_pred HHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH-----
Confidence 456788899999998 6899999998753211110 0011122222221 111 1 223479999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
|++|||||+.+|++|+|||||++||+.+...+.+.|..+ ..+.|+|+|||++.++. .||+++.+..|+|+..
T Consensus 609 -RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~------~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 609 -AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW------LAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVAD 680 (694)
T ss_pred -HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH------hCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEee
Confidence 999999999999999999999999999999999999887 24789999999999885 7999999999999999
Q ss_pred CCccccccc
Q 000957 1196 DHQHSIIEA 1204 (1209)
Q Consensus 1196 ~~~~s~~~~ 1204 (1209)
|+....+..
T Consensus 681 G~~~eLl~~ 689 (694)
T TIGR03375 681 GPKDQVLEA 689 (694)
T ss_pred CCHHHHHHH
Confidence 977666543
No 318
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.47 E-value=6.4e-14 Score=176.18 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=107.5
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccc------hhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhHH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGT------RSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl~ 1115 (1209)
...+++.+++++|.+ |+|+..++|.+......... .......+...+ +.+ . +....|||||||
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ----- 622 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ----- 622 (710)
T ss_pred HHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH-----
Confidence 456788999999997 68999999987532111110 011112222221 111 1 223569999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
|++|||||+++|++|+|||||++||+.+...+.+.|.. .+.|+|+|||++..+.. ||+++.+..|+|+..
T Consensus 623 -RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--------~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 623 -RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--------RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQR 692 (710)
T ss_pred -HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--------cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999988764 36899999999999875 999999999999999
Q ss_pred CCccccccc
Q 000957 1196 DHQHSIIEA 1204 (1209)
Q Consensus 1196 ~~~~s~~~~ 1204 (1209)
|+...++..
T Consensus 693 G~~~~Ll~~ 701 (710)
T TIGR03796 693 GTHEELWAV 701 (710)
T ss_pred cCHHHHHHc
Confidence 987776643
No 319
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=9.6e-14 Score=153.73 Aligned_cols=141 Identities=18% Similarity=0.215 Sum_probs=109.2
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc------------cccc-CCCChhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE------------LEMR-GRCSAGQKVL 1111 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~-~~lSgG~k~l 1111 (1209)
..+.+++.++++||.. |.+|...+|..... .....+++.++...+..+ .-.+ -.|||||||
T Consensus 419 ~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~---sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQ- 494 (591)
T KOG0057|consen 419 SLESLRQSIGVVPQDSVLFNDTILYNIKYGNP---SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQ- 494 (591)
T ss_pred ChHHhhhheeEeCCcccccchhHHHHhhcCCC---CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHH-
Confidence 3567899999999997 78888888766321 111234444444443322 1112 359999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
|++|||||+.+||+++|||||++||..+-..+.+++.+. ..|.|+|+|-|+..++. -||.+++...|+
T Consensus 495 -----rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~------~~~rTvI~IvH~l~ll~-~~DkI~~l~nG~ 562 (591)
T KOG0057|consen 495 -----RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV------MSGRTVIMIVHRLDLLK-DFDKIIVLDNGT 562 (591)
T ss_pred -----HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh------cCCCeEEEEEecchhHh-cCCEEEEEECCe
Confidence 999999999999999999999999999999999999885 36789999999999987 578889999999
Q ss_pred EeecCCcccccc
Q 000957 1192 VAKDDHQHSIIE 1203 (1209)
Q Consensus 1192 v~~~~~~~s~~~ 1203 (1209)
|...|+....+.
T Consensus 563 v~e~gth~ell~ 574 (591)
T KOG0057|consen 563 VKEYGTHSELLA 574 (591)
T ss_pred eEEeccHHHHhh
Confidence 998886555443
No 320
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.47 E-value=1.1e-13 Score=170.33 Aligned_cols=143 Identities=19% Similarity=0.253 Sum_probs=106.0
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccC-Cccccc------hhHHHHHHHHcC-Ccc--cc-ccCCCChhhhhhhhH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSD-SEGAGT------RSYSYKVLMQTG-DAE--LE-MRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~-~~~--~~-~~~~lSgG~k~l~sl 1114 (1209)
...++..+++++|.+ |+|+..++|.+... ...... .......+...+ +-+ .. ....|||||||
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ---- 476 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ---- 476 (571)
T ss_pred HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH----
Confidence 456778899999998 58999999977542 111110 011122222221 111 11 12369999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++|||+|+.+||+|+|||||++||+.+...+.+.|... ..+.|+|+|||+..++. .||+++....|++..
T Consensus 477 --RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~------~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 477 --RLAIARALLKDAPILILDEATSALDNESERLVQAALERL------MQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVE 547 (571)
T ss_pred --HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH------hCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEe
Confidence 999999999999999999999999999999999999876 24689999999998874 589988888899998
Q ss_pred cCCcccccc
Q 000957 1195 DDHQHSIIE 1203 (1209)
Q Consensus 1195 ~~~~~s~~~ 1203 (1209)
.|+....+.
T Consensus 548 ~g~~~~l~~ 556 (571)
T TIGR02203 548 RGTHNELLA 556 (571)
T ss_pred eCCHHHHHH
Confidence 887666553
No 321
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=1.9e-13 Score=137.89 Aligned_cols=92 Identities=21% Similarity=0.147 Sum_probs=84.2
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
.++..||-|||+ |.-||.+|+++|.+|||||||-|||......+.+.|+++. ...++||++.||++.-++
T Consensus 152 ~~vr~LSlGqRm------raeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n----~~~~aTVllTTH~~~di~ 221 (325)
T COG4586 152 WPVRKLSLGQRM------RAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYN----EERQATVLLTTHIFDDIA 221 (325)
T ss_pred hhhhhccchHHH------HHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHH----HhhCceEEEEecchhhHH
Confidence 445789999999 9999999999999999999999999999999999999884 456889999999999999
Q ss_pred HhhhHhhhhcCcEEeecCCccc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
.+|++++..+.|++.++|+-.+
T Consensus 222 ~lc~rv~~I~~Gqlv~dg~l~~ 243 (325)
T COG4586 222 TLCDRVLLIDQGQLVFDGTLAQ 243 (325)
T ss_pred HhhhheEEeeCCcEeecccHHH
Confidence 9999999999999999976444
No 322
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.46 E-value=1.2e-13 Score=172.77 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=109.2
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccc------hhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhHH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGT------RSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl~ 1115 (1209)
...+++.+++++|.+ |+|+..+++.+......... .......+...+ +.+ . .....|||||+|
T Consensus 526 ~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q----- 600 (694)
T TIGR01846 526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ----- 600 (694)
T ss_pred HHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH-----
Confidence 456778899999987 68999999977432111100 011122222221 111 1 223579999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
|++|||+|+.+|++|+|||||++||+.+...+.+.|..+ ..|.|+|+|||++..+.. ||+++.+..|+|...
T Consensus 601 -ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~------~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 601 -RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI------CRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAES 672 (694)
T ss_pred -HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH------hCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999887 247899999999999864 999999999999999
Q ss_pred CCccccccc
Q 000957 1196 DHQHSIIEA 1204 (1209)
Q Consensus 1196 ~~~~s~~~~ 1204 (1209)
|+....+..
T Consensus 673 g~~~~l~~~ 681 (694)
T TIGR01846 673 GRHEELLAL 681 (694)
T ss_pred CCHHHHHHc
Confidence 987666543
No 323
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.46 E-value=6.7e-14 Score=167.79 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=86.8
Q ss_pred HHHHHHcCCc---cccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1087 YKVLMQTGDA---ELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1087 ~~~~~~~~~~---~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
..++..++.. ....++.|||||+| |++||++|+.+|++|||||||+|||+.++..|.++|..+ ...
T Consensus 372 ~~~l~~~~l~~~~~~~~~~~LSgGq~q------rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l-----~~~ 440 (491)
T PRK10982 372 QWVIDSMRVKTPGHRTQIGSLSGGNQQ------KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEL-----AKK 440 (491)
T ss_pred HHHHHhcCccCCCcccccccCCcHHHH------HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHH-----HHC
Confidence 3455555442 24566899999999 999999999999999999999999999999999999887 235
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
|.+||+||||++++..+||+++....|++...+++
T Consensus 441 ~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 441 DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred CCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 78999999999999999999999999999866543
No 324
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=1.6e-13 Score=136.53 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=107.8
Q ss_pred HHHhhhcccc--c-CCcchhhhhhccCCccc--cchhHHHHHHHHcC-Ccc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--Y-RGQDIDYIRIHSDSEGA--GTRSYSYKVLMQTG-DAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
.=++++++.. | .-|+.+++.+....... ........+...|+ ..+ ....+.|||||+| -+||||||
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQ------MLAiaRAL 151 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQ------MLAIARAL 151 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHH------HHHHHHHH
Confidence 3344555443 3 24566776653322211 11111334444443 333 2344899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|.+|+|||||.||=|.-+..+...|+.+ +...|.+|++|-++..++..++|+.+++..|+|+..|++......
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l----~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKEL----RKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHH----HHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998 234578999999999999999999999999999999988877665
Q ss_pred cc
Q 000957 1205 QE 1206 (1209)
Q Consensus 1205 ~~ 1206 (1209)
+.
T Consensus 228 ~~ 229 (237)
T COG0410 228 PD 229 (237)
T ss_pred HH
Confidence 44
No 325
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.45 E-value=2.4e-13 Score=140.30 Aligned_cols=96 Identities=27% Similarity=0.328 Sum_probs=78.2
Q ss_pred HHHHHHHcCCccccccCCCChhhhhhhhHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1086 SYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFC----LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1086 ~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~----~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
...++.. .+.....+..|||||++ |++||++++ .+|++++|||||++||+.+...+...|.++ .
T Consensus 97 ~~~~l~~-~~~~~~~~~~LS~G~kq------rl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~-----~ 164 (197)
T cd03278 97 VSEIIEA-PGKKVQRLSLLSGGEKA------LTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEF-----S 164 (197)
T ss_pred HHHHHhC-CCccccchhhcCHHHHH------HHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHh-----c
Confidence 3344444 33334556899999999 999999875 577999999999999999999999999987 2
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
.+.|||+|||++.++. .+++.+.|.+.+++.+
T Consensus 165 -~~~tiIiitH~~~~~~------~~d~v~~~~~~~~~~~ 196 (197)
T cd03278 165 -KETQFIVITHRKGTME------AADRLYGVTMQESGVS 196 (197)
T ss_pred -cCCEEEEEECCHHHHh------hcceEEEEEeccCCCC
Confidence 2689999999999875 6888889999887765
No 326
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.45 E-value=1.7e-13 Score=146.35 Aligned_cols=90 Identities=28% Similarity=0.367 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.+..++..++... ...+..|||||+| |++||++|+.+|++|+|||||++||+.+...|.+.|..+ .
T Consensus 128 ~~~~~l~~~~l~~~~~~~~~~~LS~G~~q------rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~ 196 (224)
T TIGR02324 128 RARELLARLNIPERLWHLPPATFSGGEQQ------RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA-----K 196 (224)
T ss_pred HHHHHHHHcCCchhhhhCCcccCCHHHHH------HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----H
Confidence 3445666666543 2356889999999 999999999999999999999999999999999999987 2
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhh
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQH 1185 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~ 1185 (1209)
..|.+||+|||+..++..+||+++
T Consensus 197 ~~g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 197 ARGAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred hcCCEEEEEeCCHHHHHHhcceeE
Confidence 347899999999999988877654
No 327
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.45 E-value=1.2e-13 Score=173.53 Aligned_cols=143 Identities=18% Similarity=0.270 Sum_probs=108.0
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCc-cccc------hhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSE-GAGT------RSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl 1114 (1209)
...+++.+++++|.+ |+||..++|.+...+. .... .......+...+ +.+ . +....|||||||
T Consensus 543 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ---- 618 (708)
T TIGR01193 543 RHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ---- 618 (708)
T ss_pred HHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH----
Confidence 456788899999998 6899999998753221 1100 011122222221 111 1 223569999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++|||||+++|++|+|||||++||+.+...+.+.|..+ .|.|+|+|||++..+. .||+++.+..|+|+.
T Consensus 619 --RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-------~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 619 --RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-------QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIE 688 (708)
T ss_pred --HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-------cCCEEEEEecchHHHH-cCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988764 3679999999999885 699999999999999
Q ss_pred cCCccccccc
Q 000957 1195 DDHQHSIIEA 1204 (1209)
Q Consensus 1195 ~~~~~s~~~~ 1204 (1209)
.|+....+..
T Consensus 689 ~G~~~~L~~~ 698 (708)
T TIGR01193 689 QGSHDELLDR 698 (708)
T ss_pred ECCHHHHHhc
Confidence 9977666543
No 328
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.45 E-value=2.3e-13 Score=144.91 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=82.1
Q ss_pred HHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhh
Q 000957 1086 SYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLN---CGILALDEPTTNLDGPNAESLAAALHRIMEDR 1159 (1209)
Q Consensus 1086 ~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~---~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~ 1159 (1209)
...++..+|... ...+..|||||+| |++||++|+.+ |++++|||||+|||+..+..+.+.|..+.
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~Q------Rl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~--- 219 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQ------RIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLV--- 219 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHH------HHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH---
Confidence 344555666543 2445789999999 99999999986 79999999999999999999999999873
Q ss_pred ccCCCcEEEEEecCHHHHHHhhhHhhhh------cCcEEeecCC
Q 000957 1160 KGQENFQLIVITHDERFAQLIGQRQHAE------KYYRVAKDDH 1197 (1209)
Q Consensus 1160 ~~~~~~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~~ 1197 (1209)
..|.++|+|||++.++. .||+++.+ .-|+|...|+
T Consensus 220 --~~g~tvIiitH~~~~i~-~aD~ii~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 220 --DKGNTVVVIEHNLDVIK-CADWIIDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred --hCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEeCC
Confidence 35789999999999986 68887777 6777777664
No 329
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.2e-13 Score=169.05 Aligned_cols=102 Identities=28% Similarity=0.276 Sum_probs=86.2
Q ss_pred HHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1086 SYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1086 ~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
+..++..++... ...++.||||||+ |++||++|+.+|++|||||||+|||+.++..|.++|.++
T Consensus 410 ~~~~L~~~~l~~~~~~~~~~~LSgGekq------Rl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------- 476 (638)
T PRK10636 410 LRDYLGGFGFQGDKVTEETRRFSGGEKA------RLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF------- 476 (638)
T ss_pred HHHHHHHcCCChhHhcCchhhCCHHHHH------HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-------
Confidence 445566666532 3456899999999 999999999999999999999999999999999999875
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEe-ecCCcccc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVA-KDDHQHSI 1201 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~-~~~~~~s~ 1201 (1209)
.| +|||||||+.|+..+||++++...|+|. ..|+....
T Consensus 477 ~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 477 EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 24 9999999999999999999999999987 56654443
No 330
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.45 E-value=1e-13 Score=139.38 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=63.3
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
+..|||||++ |++||++++.+|++++|||||++||+.+...+..+|..+ +.++|+||||..++. +
T Consensus 89 ~~~LS~G~~~------rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--------~~tiiivsh~~~~~~-~ 153 (166)
T cd03223 89 DDVLSGGEQQ------RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--------GITVISVGHRPSLWK-F 153 (166)
T ss_pred CCCCCHHHHH------HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--------CCEEEEEeCChhHHh-h
Confidence 4689999999 999999999999999999999999999999999988764 469999999998764 6
Q ss_pred hhHhhhhc
Q 000957 1181 GQRQHAEK 1188 (1209)
Q Consensus 1181 ~~~~~~~~ 1188 (1209)
||+++...
T Consensus 154 ~d~i~~l~ 161 (166)
T cd03223 154 HDRVLDLD 161 (166)
T ss_pred CCEEEEEc
Confidence 66554443
No 331
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.44 E-value=2.2e-13 Score=166.11 Aligned_cols=140 Identities=16% Similarity=0.195 Sum_probs=105.4
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcC----------Ccc--c-cccCCCChhhhhhh
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTG----------DAE--L-EMRGRCSAGQKVLA 1112 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--~-~~~~~lSgG~k~l~ 1112 (1209)
...+++.+++++|.+ |+|+..+++.+....... ..........+ +.+ . .....|||||+|
T Consensus 384 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~---~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q-- 458 (569)
T PRK10789 384 LDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQ---QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ-- 458 (569)
T ss_pred HHHHHhheEEEccCCeeccccHHHHHhcCCCCCCH---HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH--
Confidence 345677788999887 588999998764321111 11111221111 111 1 223579999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
|++|||+|+.+|++++|||||++||+.+...+.+.|..+ ..|.|+|+|||+...+. .||+++.+..|+|
T Consensus 459 ----Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~------~~~~tii~itH~~~~~~-~~d~i~~l~~G~i 527 (569)
T PRK10789 459 ----RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW------GEGRTVIISAHRLSALT-EASEILVMQHGHI 527 (569)
T ss_pred ----HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHH------hCCCEEEEEecchhHHH-cCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999876 24789999999999886 5899999999999
Q ss_pred eecCCcccccc
Q 000957 1193 AKDDHQHSIIE 1203 (1209)
Q Consensus 1193 ~~~~~~~s~~~ 1203 (1209)
...|+..+.+.
T Consensus 528 ~~~g~~~~l~~ 538 (569)
T PRK10789 528 AQRGNHDQLAQ 538 (569)
T ss_pred EEecCHHHHHH
Confidence 99887665553
No 332
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.44 E-value=2e-13 Score=165.87 Aligned_cols=141 Identities=21% Similarity=0.286 Sum_probs=105.2
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCccccc------hhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhHHH
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGT------RSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl~i 1116 (1209)
..+++.+++++|.+ |+++..+++.+......... ......++..++ +.+ . .....|||||+|
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q------ 461 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ------ 461 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH------
Confidence 45677889999987 58888998875432111110 011223333332 111 1 223579999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++|||+++.+|++|+|||||++||+.+...+.+.|..+ ...|.|+|+|||+...+. .||+++....|+|...|
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~-----~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL-----KARGITVVVITHRPSLLG-CVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHH-----hhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeC
Confidence 999999999999999999999999999999999999887 235789999999999775 69999999999999888
Q ss_pred Ccccc
Q 000957 1197 HQHSI 1201 (1209)
Q Consensus 1197 ~~~s~ 1201 (1209)
+....
T Consensus 536 ~~~~l 540 (544)
T TIGR01842 536 ERDEV 540 (544)
T ss_pred CHHHH
Confidence 65544
No 333
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.44 E-value=1.5e-13 Score=180.46 Aligned_cols=140 Identities=15% Similarity=0.075 Sum_probs=109.5
Q ss_pred HHHHHHhhhcccc--c-CCcchhhhhhccCCccc---cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1050 EINKIIRELWQQT--Y-RGQDIDYIRIHSDSEGA---GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+.+.+++++|.. + .-+..+++.+.....+. .....+..++..++... ...++.||||||+ |++||
T Consensus 2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKq------RLslA 2082 (2272)
T TIGR01257 2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR------KLSTA 2082 (2272)
T ss_pred HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHH------HHHHH
Confidence 3456688888864 3 24677777654332221 11223345566677654 3455899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
+||+++|++|+|||||+||||.++..+++.|..+ ...|.+||++||+++.++.+||++++++.|++...|++..
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l-----~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI-----IREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-----HhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999987 2358899999999999999999999999999998886543
No 334
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.44 E-value=2.4e-13 Score=165.99 Aligned_cols=141 Identities=21% Similarity=0.270 Sum_probs=104.9
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCcccc-chh-----HHHHHHH-HcCCcc---ccccCCCChhhhhhhhHHH
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAG-TRS-----YSYKVLM-QTGDAE---LEMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~-~~~~~~---~~~~~~lSgG~k~l~sl~i 1116 (1209)
..+++.+++++|.+ |+++..+++.+........ ... .....+. .+++.+ ......|||||||
T Consensus 405 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q------ 478 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ------ 478 (585)
T ss_pred HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH------
Confidence 45667888899887 5888899887743211110 000 0111122 122111 1234579999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++|||+|+.+|++|+|||||++||+.+...+.+.|..+ ..|.|+|+|||+.+++. .||+++....|+|...|
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~------~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDAL------RKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKG 551 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH------hCCCEEEEEEcChHHHH-cCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999876 24789999999999995 59999999999999888
Q ss_pred Cccccc
Q 000957 1197 HQHSII 1202 (1209)
Q Consensus 1197 ~~~s~~ 1202 (1209)
+.....
T Consensus 552 ~~~~l~ 557 (585)
T TIGR01192 552 SFQELI 557 (585)
T ss_pred CHHHHH
Confidence 755554
No 335
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=1.4e-13 Score=139.59 Aligned_cols=72 Identities=29% Similarity=0.337 Sum_probs=64.8
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhH
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQR 1183 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~ 1183 (1209)
|||||++ |++||++++.+|++|+|||||++||+.++..|.++|..+ . .+.++|+|||++.++.. ||+
T Consensus 97 LS~G~~~------rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-----~-~~~tii~~sh~~~~~~~-~d~ 163 (171)
T cd03228 97 LSGGQRQ------RIAIARALLRDPPILILDEATSALDPETEALILEALRAL-----A-KGKTVIVIAHRLSTIRD-ADR 163 (171)
T ss_pred hCHHHHH------HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh-----c-CCCEEEEEecCHHHHHh-CCE
Confidence 9999999 999999999999999999999999999999999999887 2 36899999999999986 776
Q ss_pred hhhhc
Q 000957 1184 QHAEK 1188 (1209)
Q Consensus 1184 ~~~~~ 1188 (1209)
++..+
T Consensus 164 ~~~l~ 168 (171)
T cd03228 164 IIVLD 168 (171)
T ss_pred EEEEc
Confidence 65543
No 336
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=5.2e-13 Score=124.46 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=86.5
Q ss_pred ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1098 LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1098 ~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
.+.|..+|||++| |+.||+-|...|.++|+||||.|||......+.++++.+. ..-|..+||||||...+
T Consensus 146 DD~PrtFSGGMqQ------RLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv----~~l~la~viVTHDl~Va 215 (258)
T COG4107 146 DDLPRTFSGGMQQ------RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV----RELGLAVVIVTHDLAVA 215 (258)
T ss_pred cCcccccchHHHH------HHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHH----HhcCceEEEEechhHHH
Confidence 4566899999999 9999999999999999999999999999999999999985 34578999999999999
Q ss_pred HHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1178 QLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1178 ~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.-++++.+++..|+|+..|-...++.
T Consensus 216 rLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 216 RLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred HHhhhcceeecCCCEecccccccccc
Confidence 99999999999999998885555443
No 337
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.44 E-value=2.8e-13 Score=142.20 Aligned_cols=114 Identities=25% Similarity=0.147 Sum_probs=83.2
Q ss_pred HHHhhhcccc---cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccC
Q 000957 1053 KIIRELWQQT---YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLN 1127 (1209)
Q Consensus 1053 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~ 1127 (1209)
..++++++.. ...+..+++.+.....+. .......++..++... ...++.|||||++ |++||++|+.+
T Consensus 73 ~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rl~la~al~~~ 145 (207)
T PRK13539 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGG-EELDIAAALEAVGLAPLAHLPFGYLSAGQKR------RVALARLLVSN 145 (207)
T ss_pred hhcEEecCCCcCCCCCcHHHHHHHHHHhcCC-cHHHHHHHHHHcCCHHHHcCChhhcCHHHHH------HHHHHHHHhcC
Confidence 3445555433 134566666543221111 1123455666666544 3455789999999 99999999999
Q ss_pred CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1128 CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1128 ~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
|++|+|||||+|||+.++..|..+|.++. ..|.++|+|||+..++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~-----~~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHL-----AQGGIVIAATHIPLGLP 191 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCchhhc
Confidence 99999999999999999999999999872 34789999999999987
No 338
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.9e-13 Score=157.29 Aligned_cols=144 Identities=22% Similarity=0.250 Sum_probs=112.1
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCcc------ccchhHHHHHHHHcCCccc----cccCCCChhhhhhhhHHH
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEG------AGTRSYSYKVLMQTGDAEL----EMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~----~~~~~lSgG~k~l~sl~i 1116 (1209)
..+++.++.+-|.+ |.|+..++|.+..+... +.....+...++.++.... +...+|||||||
T Consensus 538 ~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ------ 611 (716)
T KOG0058|consen 538 KYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ------ 611 (716)
T ss_pred HHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHH------
Confidence 45668888888887 89999999988655221 1222334444554433222 233589999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|+||||||..+|.+|||||.|++||.++-..+.+.|..+. .|.|+|||.|.+..+. .+|.+.+...|+|..-|
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~------~~rTVlvIAHRLSTV~-~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM------QGRTVLVIAHRLSTVR-HADQIVVIDKGRVVEMG 684 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh------cCCeEEEEehhhhHhh-hccEEEEEcCCeEEecc
Confidence 9999999999999999999999999999999999998873 4589999999999997 57888899999999988
Q ss_pred Ccccccccc
Q 000957 1197 HQHSIIEAQ 1205 (1209)
Q Consensus 1197 ~~~s~~~~~ 1205 (1209)
+-.+.+..+
T Consensus 685 ~h~eLl~~~ 693 (716)
T KOG0058|consen 685 THDELLSKP 693 (716)
T ss_pred cHHHHhhCc
Confidence 766665544
No 339
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.43 E-value=2.2e-13 Score=179.03 Aligned_cols=141 Identities=20% Similarity=0.191 Sum_probs=111.7
Q ss_pred HHHHHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1049 EEINKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
..+++.+++++|.. |+ .+..+++.+.....+ ......+..++..+|..+ ...++.||||||| |++|
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQ------RLsL 1072 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQR------KLSV 1072 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH------HHHH
Confidence 34566788888875 33 467888776432221 111234456677777654 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|+||+.+|++++|||||+|||+.++..++++|.++ . .|.+||++||+++.+..+||+++.+..|++...|++..
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-----~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-----R-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLF 1146 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-----h-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999987 2 37899999999999999999999999999998886544
Q ss_pred c
Q 000957 1201 I 1201 (1209)
Q Consensus 1201 ~ 1201 (1209)
+
T Consensus 1147 L 1147 (2272)
T TIGR01257 1147 L 1147 (2272)
T ss_pred H
Confidence 3
No 340
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.43 E-value=2.2e-13 Score=146.53 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=78.2
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
...++..++... ...+..|||||++ |++||++|+.+|++++|||||++||+.++..|..+|.++. ..
T Consensus 120 ~~~~l~~~gl~~~~~~~~~~LS~G~~q------rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-----~~ 188 (255)
T cd03236 120 LDELVDQLELRHVLDRNIDQLSGGELQ------RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA-----ED 188 (255)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHH------HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hc
Confidence 445566666543 2345789999999 9999999999999999999999999999999999999883 34
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEK 1188 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~ 1188 (1209)
|.++|+||||+.++..+||++++++
T Consensus 189 ~~tIIiiSHd~~~~~~~ad~i~~l~ 213 (255)
T cd03236 189 DNYVLVVEHDLAVLDYLSDYIHCLY 213 (255)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEC
Confidence 7899999999999999999887774
No 341
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.43 E-value=2.9e-13 Score=141.33 Aligned_cols=114 Identities=13% Similarity=0.026 Sum_probs=84.0
Q ss_pred HHHHhhhcccc--c-CCcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1052 NKIIRELWQQT--Y-RGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
.+.++++++.+ + ..+..+++.+...... .......++..++..+ ...++.|||||++ |++||++|+.
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~------rv~laral~~ 144 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKR------QVALLRLWMS 144 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcCc--chHHHHHHHHHcCCchhhhCChhhcCHHHHH------HHHHHHHHhc
Confidence 34456666654 2 3466776654321111 1123445666665543 2344789999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
+|++|+|||||++||+.++..|.++|.++ ...|.++|+|||+..++.
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~-----~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEH-----RAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHH-----HHcCCEEEEEeCCchhcc
Confidence 99999999999999999999999999987 234789999999999987
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.43 E-value=2.1e-13 Score=167.67 Aligned_cols=99 Identities=26% Similarity=0.259 Sum_probs=85.2
Q ss_pred HHHHHHHcCCccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCc
Q 000957 1086 SYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENF 1165 (1209)
Q Consensus 1086 ~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~ 1165 (1209)
+..++..+|......++.|||||++ |++||++|+.+|++|||||||+|||+.++..|..+|..+ +.
T Consensus 139 ~~~~l~~lgl~~~~~~~~LSgGekq------Rv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--------~~ 204 (635)
T PRK11147 139 INEVLAQLGLDPDAALSSLSGGWLR------KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--------QG 204 (635)
T ss_pred HHHHHHhCCCCCCCchhhcCHHHHH------HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--------CC
Confidence 4456666666544566899999999 999999999999999999999999999999999988875 24
Q ss_pred EEEEEecCHHHHHHhhhHhhhhcCcEEee-cCCc
Q 000957 1166 QLIVITHDERFAQLIGQRQHAEKYYRVAK-DDHQ 1198 (1209)
Q Consensus 1166 ~~i~itH~~~~~~~~~~~~~~~~~~~v~~-~~~~ 1198 (1209)
+|||||||..|+..+|++++..+.|+|+. .|+.
T Consensus 205 tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~ 238 (635)
T PRK11147 205 SIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNY 238 (635)
T ss_pred EEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCH
Confidence 99999999999999999999999999974 3543
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=2.2e-13 Score=166.93 Aligned_cols=98 Identities=26% Similarity=0.262 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCc--c-ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDA--E-LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~--~-~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.+..++..+|.. . ...++.|||||++ |++||++|+.+|++|||||||+|||+.++..|..+|..+
T Consensus 128 ~~~~~L~~lgl~~~~~~~~~~~LSgGerq------Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------ 195 (638)
T PRK10636 128 RAASLLHGLGFSNEQLERPVSDFSGGWRM------RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------ 195 (638)
T ss_pred HHHHHHHhCCCCchhhcCchhhcCHHHHH------HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------
Confidence 344566666653 1 3456899999999 999999999999999999999999999999988887764
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee-cC
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAK-DD 1196 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~-~~ 1196 (1209)
+.+|||||||+.|+..+|++++....|+|.. .|
T Consensus 196 --~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g 229 (638)
T PRK10636 196 --QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTG 229 (638)
T ss_pred --CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecC
Confidence 3599999999999999999999999999964 44
No 344
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.43 E-value=2.1e-13 Score=130.18 Aligned_cols=111 Identities=19% Similarity=0.259 Sum_probs=96.4
Q ss_pred hHHHHHHHHcCCccc--cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1084 SYSYKVLMQTGDAEL--EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1084 ~~~~~~~~~~~~~~~--~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.++..++...|..+. ...+.||-|||| +|-|++.++++|.+|+||||++|+-.......+++|..+.
T Consensus 126 ~ride~La~igL~~~~~~~A~~LSHGqKQ------wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la----- 194 (249)
T COG4674 126 RRIDELLATIGLGDERDRLAALLSHGQKQ------WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA----- 194 (249)
T ss_pred HHHHHHHHHcccchhhhhhhhhhccchhh------hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh-----
Confidence 456677888777664 444889999999 9999999999999999999999999999999999999982
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQE 1206 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~ 1206 (1209)
...+|+||-|||.|+..+++++-++|.|.|...|+-..+-..+.
T Consensus 195 -~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~ 238 (249)
T COG4674 195 -GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPK 238 (249)
T ss_pred -cCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcc
Confidence 45799999999999999999999999999999997655544443
No 345
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.43 E-value=2e-13 Score=133.42 Aligned_cols=75 Identities=33% Similarity=0.436 Sum_probs=66.2
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
+..+|||||++ |++||++|+.+|++++|||||++||+.++..|.+.|..+ +.++|+|||+.+++..
T Consensus 67 ~~~~lS~G~~~------rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--------~~til~~th~~~~~~~ 132 (144)
T cd03221 67 YFEQLSGGEKM------RLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--------PGTVILVSHDRYFLDQ 132 (144)
T ss_pred EEccCCHHHHH------HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--------CCEEEEEECCHHHHHH
Confidence 33459999999 999999999999999999999999999999999988765 3599999999999998
Q ss_pred hhhHhhhhc
Q 000957 1180 IGQRQHAEK 1188 (1209)
Q Consensus 1180 ~~~~~~~~~ 1188 (1209)
+||+++.+.
T Consensus 133 ~~d~v~~l~ 141 (144)
T cd03221 133 VATKIIELE 141 (144)
T ss_pred hCCEEEEEe
Confidence 887765553
No 346
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=2.2e-13 Score=164.82 Aligned_cols=108 Identities=22% Similarity=0.227 Sum_probs=90.1
Q ss_pred HHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.+..++..++.. . ...++.|||||++ |++||++|+.+|++|+|||||+|||+.++..|...|..+
T Consensus 417 ~~~~~l~~~~l~~~~~~~~~~~LSgGq~q------rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~------ 484 (530)
T PRK15064 417 AVRGTLGRLLFSQDDIKKSVKVLSGGEKG------RMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY------ 484 (530)
T ss_pred HHHHHHHHcCCChhHhcCcccccCHHHHH------HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC------
Confidence 345566666652 2 3566899999999 999999999999999999999999999999999988764
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe-ecCCccccccccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVA-KDDHQHSIIEAQE 1206 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~-~~~~~~s~~~~~~ 1206 (1209)
+.+||+||||..++..+||++++.+.|++. ..|+...++....
T Consensus 485 --~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 485 --EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred --CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 249999999999999999999999999987 6676666555433
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.41 E-value=3.6e-13 Score=165.66 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=93.9
Q ss_pred Hhhhcccc---cC-CcchhhhhhccCCcc-ccchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1055 IRELWQQT---YR-GQDIDYIRIHSDSEG-AGTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1055 ~~~~~~~~---~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
+++++|.. ++ .+..+++.+...... .+....+..++..++... ...++.||||||+ |++||++|+.
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq------Rl~la~al~~ 457 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERN------RLLLARLFLK 457 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHH------HHHHHHHHhc
Confidence 56666642 22 255666654221110 111123445565665432 3456899999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc-CcEEeecC
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK-YYRVAKDD 1196 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~-~~~v~~~~ 1196 (1209)
+|++|||||||+|||+.++..|.++|.++ +.+|||||||..++..+|++++... .|+|....
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~ 520 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY--------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYV 520 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEcc
Confidence 99999999999999999999888888764 3499999999999999999999886 78886653
No 348
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.41 E-value=3.1e-13 Score=168.75 Aligned_cols=141 Identities=18% Similarity=0.198 Sum_probs=105.0
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcC----------Ccc--c-cccCCCChhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTG----------DAE--L-EMRGRCSAGQKVL 1111 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--~-~~~~~lSgG~k~l 1111 (1209)
....+++.+++++|.+ |+|+..++|.+...... ......++...+ +.+ . +....|||||||
T Consensus 549 ~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~---~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ- 624 (711)
T TIGR00958 549 DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTP---DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ- 624 (711)
T ss_pred CHHHHHhhceEEecCccccccCHHHHHhcCCCCCC---HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH-
Confidence 3466788899999998 68999999977532211 112222222222 111 1 122479999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
|++|||+++++|++|||||||++||+.+...+.+ .. ...+.|+|+|||+.+.+. .||++++...|+
T Consensus 625 -----RlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-------~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ 690 (711)
T TIGR00958 625 -----RIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-------SRASRTVLLIAHRLSTVE-RADQILVLKKGS 690 (711)
T ss_pred -----HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-------ccCCCeEEEEeccHHHHH-hCCEEEEEECCE
Confidence 9999999999999999999999999988887776 11 225789999999999886 589999999999
Q ss_pred EeecCCcccccccc
Q 000957 1192 VAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1192 v~~~~~~~s~~~~~ 1205 (1209)
|+..|+....+...
T Consensus 691 ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 691 VVEMGTHKQLMEDQ 704 (711)
T ss_pred EEEeeCHHHHHhCC
Confidence 99999877766443
No 349
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.41 E-value=5.7e-13 Score=164.05 Aligned_cols=140 Identities=20% Similarity=0.226 Sum_probs=105.9
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHH---------HHHHcC-Ccc--c-cccCCCChhhhhhh
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYK---------VLMQTG-DAE--L-EMRGRCSAGQKVLA 1112 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~--~-~~~~~lSgG~k~l~ 1112 (1209)
...+++.+++++|.+ |+|+..+++.+...... ...... ++...+ +.+ . +....|||||+|
T Consensus 409 ~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~---~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q-- 483 (576)
T TIGR02204 409 PAELRARMALVPQDPVLFAASVMENIRYGRPDAT---DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ-- 483 (576)
T ss_pred HHHHHHhceEEccCCccccccHHHHHhcCCCCCC---HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH--
Confidence 456778899999998 68999999977432111 111222 222221 111 1 222469999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
|++|||+++.+|++|+|||||++||+.+...+.+.|..+. .+.|+|+|||+...+. .||+++....|++
T Consensus 484 ----rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~------~~~t~IiitH~~~~~~-~~d~vi~l~~g~~ 552 (576)
T TIGR02204 484 ----RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM------KGRTTLIIAHRLATVL-KADRIVVMDQGRI 552 (576)
T ss_pred ----HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh------CCCEEEEEecchHHHH-hCCEEEEEECCEE
Confidence 9999999999999999999999999999999999988862 4689999999998875 5899999999999
Q ss_pred eecCCcccccc
Q 000957 1193 AKDDHQHSIIE 1203 (1209)
Q Consensus 1193 ~~~~~~~s~~~ 1203 (1209)
...|+....+.
T Consensus 553 ~~~g~~~~l~~ 563 (576)
T TIGR02204 553 VAQGTHAELIA 563 (576)
T ss_pred EeeecHHHHHH
Confidence 98887655543
No 350
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=3.8e-13 Score=140.38 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=73.4
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEE-EecCHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIV-ITHDERFAQ 1178 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~-itH~~~~~~ 1178 (1209)
.+..|||||++ |++||++|+.+|++|+|||||++||+.++..|...|.++. ...+.++|| ++|+.+.+.
T Consensus 115 ~~~~LS~Ge~q------rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~----~~~~~t~ii~~~h~~~~~~ 184 (202)
T cd03233 115 FVRGISGGERK------RVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA----DVLKTTTFVSLYQASDEIY 184 (202)
T ss_pred chhhCCHHHHH------HHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEEcCCHHHHH
Confidence 44689999999 9999999999999999999999999999999999999883 223556555 566778888
Q ss_pred HhhhHhhhhcCcEEeec
Q 000957 1179 LIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~ 1195 (1209)
.+||+++++..|+|...
T Consensus 185 ~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 185 DLFDKVLVLYEGRQIYY 201 (202)
T ss_pred HhCCeEEEEECCEEEec
Confidence 89999999999988754
No 351
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=3.6e-13 Score=162.95 Aligned_cols=102 Identities=27% Similarity=0.371 Sum_probs=85.8
Q ss_pred HHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1086 SYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1086 ~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
+..++..+|..+ ...++.|||||++ |++||++|+.+|++|+|||||++||+.++..|.++|.+
T Consensus 135 ~~~~l~~~gl~~~~~~~~~~~LSgGq~q------rv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-------- 200 (530)
T PRK15064 135 AGELLLGVGIPEEQHYGLMSEVAPGWKL------RVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE-------- 200 (530)
T ss_pred HHHHHHhCCCChhHhcCchhhcCHHHHH------HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--------
Confidence 445666666643 1346899999999 99999999999999999999999999999998887753
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEe-ecCCcccc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVA-KDDHQHSI 1201 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~-~~~~~~s~ 1201 (1209)
.|.+||+||||+.++..+||+++....|++. ..|+..+.
T Consensus 201 ~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 201 RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 3679999999999999999999999999984 66655443
No 352
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.40 E-value=3.9e-13 Score=146.29 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=79.8
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
...|||||+| |++||++|+.+|++|||||||++||+.+...|..+|..+ . .+.++|+|||++..+..
T Consensus 154 ~~~LS~G~~q------rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~-----~-~~~tiii~sh~~~~~~~- 220 (257)
T cd03288 154 GENFSVGQRQ------LFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTA-----F-ADRTVVTIAHRVSTILD- 220 (257)
T ss_pred CCcCCHHHHH------HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-----c-CCCEEEEEecChHHHHh-
Confidence 4689999999 999999999999999999999999999999999988875 2 37899999999999986
Q ss_pred hhHhhhhcCcEEeecCCccccc
Q 000957 1181 GQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
||+++.++.|+|...|+...++
T Consensus 221 ~dri~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 221 ADLVLVLSRGILVECDTPENLL 242 (257)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999888655443
No 353
>PLN03211 ABC transporter G-25; Provisional
Probab=99.40 E-value=3.6e-13 Score=164.21 Aligned_cols=139 Identities=18% Similarity=0.125 Sum_probs=106.7
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCc-c-----ccchhHHHHHHHHcCCccc-------cccCCCChhhhhhhhHHH
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSE-G-----AGTRSYSYKVLMQTGDAEL-------EMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~-------~~~~~lSgG~k~l~sl~i 1116 (1209)
+.+++++|.. ++ .+..+++.+..... + ......+..++..+|..+. ...+.||||||+
T Consensus 140 ~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerq------ 213 (659)
T PLN03211 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERK------ 213 (659)
T ss_pred cceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhh------
Confidence 4467788775 33 46777776633211 1 1112234556666666442 234679999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH-HHHHhhhHhhhhcCcEEeec
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER-FAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~-~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+.+ ...|.|+|++||++. .+..+||+++....|++...
T Consensus 214 Rv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l-----~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~ 288 (659)
T PLN03211 214 RVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL-----AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF 288 (659)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHH-----HhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE
Confidence 999999999999999999999999999999999999988 335889999999998 48889999999999999999
Q ss_pred CCccccc
Q 000957 1196 DHQHSII 1202 (1209)
Q Consensus 1196 ~~~~s~~ 1202 (1209)
|+...++
T Consensus 289 G~~~~~~ 295 (659)
T PLN03211 289 GKGSDAM 295 (659)
T ss_pred CCHHHHH
Confidence 9765543
No 354
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.40 E-value=5.3e-13 Score=139.30 Aligned_cols=112 Identities=24% Similarity=0.187 Sum_probs=80.1
Q ss_pred HHhhhcccc--cC-CcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCC
Q 000957 1054 IIRELWQQT--YR-GQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNC 1128 (1209)
Q Consensus 1054 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~ 1128 (1209)
.++++++.. ++ .+..+++.+.....+.. ......++..++..+ ...++.|||||++ |++||++|+.+|
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q------rv~la~al~~~p 146 (198)
T TIGR01189 74 NILYLGHLPGLKPELSALENLHFWAAIHGGA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQR------RLALARLWLSRA 146 (198)
T ss_pred heEEeccCcccccCCcHHHHHHHHHHHcCCc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHH------HHHHHHHHhcCC
Confidence 345555543 22 45666655432211111 123445566666543 3456889999999 999999999999
Q ss_pred CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1129 GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1129 ~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
++++|||||++||+.++..|.+.|.++ ...|.++|+|||+...+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAH-----LARGGIVLLTTHQDLGL 190 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHH-----HhCCCEEEEEEcccccc
Confidence 999999999999999999999999987 23578999999998544
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=3.7e-13 Score=134.70 Aligned_cols=74 Identities=38% Similarity=0.546 Sum_probs=65.6
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhh
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQ 1182 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~ 1182 (1209)
+|||||++ |++|+++++.+|++++|||||++||+.++..+.+.|..+. ..+.++|+|||+..++..+||
T Consensus 80 qlS~G~~~------r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~-----~~~~tii~~sh~~~~~~~~~d 148 (157)
T cd00267 80 QLSGGQRQ------RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA-----EEGRTVIIVTHDPELAELAAD 148 (157)
T ss_pred eCCHHHHH------HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-----HCCCEEEEEeCCHHHHHHhCC
Confidence 49999999 9999999999999999999999999999999999999872 236899999999999997766
Q ss_pred Hhhhh
Q 000957 1183 RQHAE 1187 (1209)
Q Consensus 1183 ~~~~~ 1187 (1209)
+++..
T Consensus 149 ~i~~l 153 (157)
T cd00267 149 RVIVL 153 (157)
T ss_pred EEEEE
Confidence 55443
No 356
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.40 E-value=4.3e-13 Score=146.21 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=77.5
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHH-HHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAAL-HRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l-~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
+..|||||++ |++||++|+.+|++|||||||+|||+.++..|...+ ..+ . .+.+||+|||++.++.
T Consensus 157 ~~~LSgGq~q------rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-----~-~~~tIiiisH~~~~~~- 223 (282)
T cd03291 157 GITLSGGQRA------RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-----M-ANKTRILVTSKMEHLK- 223 (282)
T ss_pred CCcCCHHHHH------HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-----h-CCCEEEEEeCChHHHH-
Confidence 3689999999 999999999999999999999999999999888754 444 2 3689999999999985
Q ss_pred hhhHhhhhcCcEEeecCCccccc
Q 000957 1180 IGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
.||+++.+..|+|...|+...+.
T Consensus 224 ~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 224 KADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred hCCEEEEEECCEEEEECCHHHHH
Confidence 79999999999999888765544
No 357
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.40 E-value=4.1e-13 Score=161.12 Aligned_cols=101 Identities=19% Similarity=0.128 Sum_probs=84.0
Q ss_pred HHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1086 SYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1086 ~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
+..++..++... ...++.|||||+| |++||++|+.+|++|+|||||+|||+.++..|.++|.++. ..
T Consensus 381 ~~~~l~~~~l~~~~~~~~~~~LSgGq~q------rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~----~~ 450 (490)
T PRK10938 381 AQQWLDILGIDKRTADAPFHSLSWGQQR------LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLI----SE 450 (490)
T ss_pred HHHHHHHcCCchhhccCchhhCCHHHHH------HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH----hc
Confidence 445666666543 3455899999999 9999999999999999999999999999999999999983 22
Q ss_pred CCcEEEEEecCHHHHHH-hhhHhhhhcCcEEeecC
Q 000957 1163 ENFQLIVITHDERFAQL-IGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~-~~~~~~~~~~~~v~~~~ 1196 (1209)
.+.+||+||||++++.. +|+++++++.|+|....
T Consensus 451 ~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 451 GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 23579999999999987 58888888888876643
No 358
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.40 E-value=4.1e-13 Score=177.16 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=108.7
Q ss_pred hcHHHHHHHHhhhcccc--cCCcchhhhhhccCCccc------cchhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhh
Q 000957 1046 MKMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGA------GTRSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLAS 1113 (1209)
Q Consensus 1046 ~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~s 1113 (1209)
.....+++.+++++|.+ |.|+..++|.+....... .........+...+ +.+ . +....|||||||
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQ--- 1365 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ--- 1365 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHH---
Confidence 34567889999999997 799999999885321111 01112223333332 111 1 123479999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcC----
Q 000957 1114 LIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKY---- 1189 (1209)
Q Consensus 1114 l~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~---- 1189 (1209)
|+||||||+.+|++|||||||++||+.+...+.+.|..+. ...|.|+|+|||++..+. .||+++++..
T Consensus 1366 ---RIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~----~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~ 1437 (1466)
T PTZ00265 1366 ---RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK----DKADKTIITIAHRIASIK-RSDKIVVFNNPDRT 1437 (1466)
T ss_pred ---HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh----ccCCCEEEEEechHHHHH-hCCEEEEEeCCCCC
Confidence 9999999999999999999999999999999999998862 125789999999999986 5899888887
Q ss_pred cEEe-ecCCcccccc
Q 000957 1190 YRVA-KDDHQHSIIE 1203 (1209)
Q Consensus 1190 ~~v~-~~~~~~s~~~ 1203 (1209)
|+++ ..|+....+.
T Consensus 1438 G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1438 GSFVQAHGTHEELLS 1452 (1466)
T ss_pred CCEEEEecCHHHHHh
Confidence 7744 5676665553
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=99.39 E-value=6.5e-13 Score=162.74 Aligned_cols=100 Identities=25% Similarity=0.206 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
....++..++... ...++.||||||+ |++||++|+.+|++|||||||+|||+.++..|...|..+
T Consensus 606 ~i~~~L~~~gl~~~~~~~~~~~LSgGqkq------RvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~------ 673 (718)
T PLN03073 606 KLRAHLGSFGVTGNLALQPMYTLSGGQKS------RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF------ 673 (718)
T ss_pred HHHHHHHHCCCChHHhcCCccccCHHHHH------HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc------
Confidence 3445666666542 3456899999999 999999999999999999999999999999988877654
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe-ecCCc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVA-KDDHQ 1198 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~-~~~~~ 1198 (1209)
.| +|||||||+.++..+|++++....|+|. ..|+.
T Consensus 674 -~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 674 -QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTF 709 (718)
T ss_pred -CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCH
Confidence 23 9999999999999999999999999987 55543
No 360
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.39 E-value=7.4e-13 Score=160.72 Aligned_cols=125 Identities=24% Similarity=0.178 Sum_probs=93.1
Q ss_pred Hhhhcccc---cC-CcchhhhhhccCCcc-ccchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1055 IRELWQQT---YR-GQDIDYIRIHSDSEG-AGTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1055 ~~~~~~~~---~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
++++||.. ++ .+..+++.+.....+ .........++..++... ...++.|||||++ |++||++|+.
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~q------rv~la~al~~ 460 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERN------RVHLAKTLKS 460 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHH------HHHHHHHHhh
Confidence 67777763 22 356666654321111 111112334566666532 3456899999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcC-cEEe
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKY-YRVA 1193 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~-~~v~ 1193 (1209)
+|++|||||||+|||+.++..|..+|..+ . | +|||||||+.++..+||+++.+.. +++.
T Consensus 461 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~--~-~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 461 GGNVLLLDEPTNDLDVETLRALEEALLEF-----A--G-CAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHC-----C--C-eEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 99999999999999999999999998876 2 3 799999999999999999988875 4654
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=99.39 E-value=6.5e-13 Score=162.77 Aligned_cols=99 Identities=21% Similarity=0.242 Sum_probs=84.7
Q ss_pred HHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.+..++..+|... ...++.|||||++ |++||++|+.+|++|||||||++||+.++..|..+|..+
T Consensus 323 r~~~~L~~lgl~~~~~~~~~~~LSgG~k~------rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------ 390 (718)
T PLN03073 323 RAASILAGLSFTPEMQVKATKTFSGGWRM------RIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------ 390 (718)
T ss_pred HHHHHHHHCCCChHHHhCchhhCCHHHHH------HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------
Confidence 3445666666542 2455899999999 999999999999999999999999999999999988765
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe-ecCC
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVA-KDDH 1197 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~-~~~~ 1197 (1209)
+.+|||||||..++..+|++++..+.|+|. ..|+
T Consensus 391 --~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~ 425 (718)
T PLN03073 391 --PKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD 425 (718)
T ss_pred --CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCC
Confidence 469999999999999999999999999996 4453
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.39 E-value=5.7e-13 Score=155.29 Aligned_cols=95 Identities=28% Similarity=0.323 Sum_probs=78.4
Q ss_pred HHHHHHHcCCc---cccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1086 SYKVLMQTGDA---ELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1086 ~~~~~~~~~~~---~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
+...+..++.. ...+++.||||||. |++||+.++.+|.+|||||||++||..++..|..+|.++
T Consensus 419 ~r~~L~~f~F~~~~~~~~v~~LSGGEk~------Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f------- 485 (530)
T COG0488 419 VRAYLGRFGFTGEDQEKPVGVLSGGEKA------RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF------- 485 (530)
T ss_pred HHHHHHHcCCChHHHhCchhhcCHhHHH------HHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-------
Confidence 33455554422 24556889999999 999999999999999999999999999999999999886
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
..+||+||||..|+..+|++++...- .+...
T Consensus 486 -~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 486 -EGTVLLVSHDRYFLDRVATRIWLVED-KVEEF 516 (530)
T ss_pred -CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEc
Confidence 35999999999999999988777665 44444
No 363
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.38 E-value=5.9e-13 Score=161.47 Aligned_cols=100 Identities=21% Similarity=0.172 Sum_probs=83.5
Q ss_pred HHHHHHHcCCcc-ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1086 SYKVLMQTGDAE-LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1086 ~~~~~~~~~~~~-~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
+..++..+|... ...++.||||||+ |++||++|+.+|++|||||||++||+.++..|.+.|.++ .
T Consensus 145 ~~~~l~~~gl~~~~~~~~~LSgGqkq------rv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~-----~--- 210 (556)
T PRK11819 145 LEIAMDALRCPPWDAKVTKLSGGERR------RVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY-----P--- 210 (556)
T ss_pred HHHHHHhCCCCcccCchhhcCHHHHH------HHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC-----C---
Confidence 334555555432 3445789999999 999999999999999999999999999999999988875 1
Q ss_pred cEEEEEecCHHHHHHhhhHhhhhcCcEEe-ecCCcc
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAEKYYRVA-KDDHQH 1199 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~~~~~v~-~~~~~~ 1199 (1209)
.+|||||||.+++..+||+++.+..|++. ..|+..
T Consensus 211 ~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 246 (556)
T PRK11819 211 GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYS 246 (556)
T ss_pred CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHH
Confidence 49999999999999999999999999976 556443
No 364
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.38 E-value=1.5e-12 Score=126.70 Aligned_cols=92 Identities=26% Similarity=0.247 Sum_probs=83.0
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
+.++-||||||| -++|++|.+++|.+|+|||-|++|||.....+.+.-.+|+.. .+.|-++|||+++-+-
T Consensus 144 ~~iglLSGGQRQ------alsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~----~klTtlMVTHnm~~Al 213 (263)
T COG1101 144 DRIGLLSGGQRQ------ALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE----HKLTTLMVTHNMEDAL 213 (263)
T ss_pred ChhhhccchHHH------HHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHh----cCCceEEEeccHHHHH
Confidence 456889999999 888888899999999999999999999999999999999743 4679999999999999
Q ss_pred HhhhHhhhhcCcEEeecCCccc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
.+++|.+++|.|+|+-+-.+.+
T Consensus 214 ~yG~RlImLh~G~IvlDv~g~~ 235 (263)
T COG1101 214 DYGNRLIMLHSGKIVLDVTGEE 235 (263)
T ss_pred hhCCeEEEEeCCeEEEEccccc
Confidence 9999999999999999865543
No 365
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.37 E-value=9.2e-13 Score=132.23 Aligned_cols=103 Identities=22% Similarity=0.204 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCccc--cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1085 YSYKVLMQTGDAEL--EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~~--~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
.+..++..+|.... ...+.||-||++ |+.||||++.+|.+|||||||+|||..++..|.+.|.++.. ..
T Consensus 151 ~a~~lle~~g~~~la~r~~~~LS~Ge~r------rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~---~~ 221 (257)
T COG1119 151 AAQWLLELLGAKHLADRPFGSLSQGEQR------RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA---SP 221 (257)
T ss_pred HHHHHHHHcchhhhccCchhhcCHhHHH------HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhc---CC
Confidence 44556677777653 334789999999 99999999999999999999999999999999999999841 22
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
.+.++|+|||..+.+-...++......|+|...|
T Consensus 222 ~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 222 GAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred CCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 3779999999999998766666666666666554
No 366
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.37 E-value=1.7e-05 Score=104.74 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=51.6
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCe---EEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGI---LALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~---l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
.-|-|+--||=+.|-++|-+.|+...|+ +.+||.. -|||.|+..|..++.. .|.+||-.+-++
T Consensus 1120 vsS~G~syLi~~~~~i~l~~~lr~~~~~~ihwpiDEiG-~L~~~Nv~~l~~~~~~--------nnI~li~A~P~~ 1185 (1201)
T PF12128_consen 1120 VSSHGTSYLILCMFFIALTRMLRGDADFRIHWPIDEIG-KLHPNNVKKLLDMCNS--------NNISLISAFPNP 1185 (1201)
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCCeEEEeeehhhc-cCChHHHHHHHHHHHh--------CCceEEEeCCCC
Confidence 4699999999999999999999988766 4589985 6999999998887654 467888877655
No 367
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.37 E-value=8.5e-13 Score=140.61 Aligned_cols=84 Identities=31% Similarity=0.371 Sum_probs=70.4
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhh
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQ 1182 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~ 1182 (1209)
.|||||+.+++|+|+||+.+. .++|+++||||+++||+.|+..|+.+|.+. ..+.|||||||+..++.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~--~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~------~~~~Q~ii~Th~~~~~~---- 203 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRY--KPSPFLILDEVDAALDEQNRKRLADLLKEL------SKQSQFIITTHNPEMFE---- 203 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTC--S--SEEEEESTTTTS-HHHHHHHHHHHHHH------TTTSEEEEE-S-HHHHT----
T ss_pred ccccccccccccccccccccc--cccccccccccccccccccccccccccccc------ccccccccccccccccc----
Confidence 799999999999999997764 789999999999999999999999999987 34689999999999998
Q ss_pred HhhhhcCcEEeecCCccc
Q 000957 1183 RQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1183 ~~~~~~~~~v~~~~~~~s 1200 (1209)
.+++.++|.+.+.|.|
T Consensus 204 --~a~~~~~v~~~~~g~~ 219 (220)
T PF02463_consen 204 --DADKLIGVTMVENGVS 219 (220)
T ss_dssp --T-SEEEEEEECCTTCE
T ss_pred --cccccccccccccccC
Confidence 8999999999877776
No 368
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.37 E-value=9.6e-13 Score=136.83 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=77.0
Q ss_pred CCcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q 000957 1064 RGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLD 1141 (1209)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD 1141 (1209)
..+..+++.+.....+ .......++..++..+ ...++.|||||++ |++||++++.+|++|+|||||++||
T Consensus 84 ~~tv~~~l~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~------rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 84 EMTVFENLKFWSEIYN--SAETLYAAIHYFKLHDLLDEKCYSLSSGMQK------IVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cCCHHHHHHHHHHhcc--cHHHHHHHHHHcCCHhhhccChhhCCHHHHH------HHHHHHHHhcCCCEEEEeCCcccCC
Confidence 4566666654322111 1223445556655433 3345789999999 9999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1142 GPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1142 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
+.++..|..+|... ...|.++|+|||+..++.
T Consensus 156 ~~~~~~l~~~l~~~-----~~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 156 KENRDLLNNLIVMK-----ANSGGIVLLSSHLESSIK 187 (195)
T ss_pred HHHHHHHHHHHHHH-----HhCCCEEEEEeCCccccc
Confidence 99999999998765 235789999999998876
No 369
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.37 E-value=6.3e-13 Score=139.99 Aligned_cols=84 Identities=29% Similarity=0.237 Sum_probs=71.6
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhcc----------CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEE
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCL----------NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLI 1168 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~----------~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i 1168 (1209)
..++.|||||++ |++||++|+. +|++++|||||++||+.....|..+|..+ ...|.++|
T Consensus 119 ~~~~~lS~G~~~------r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~-----~~~~~tii 187 (213)
T cd03279 119 RPVSTLSGGETF------LASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI-----RTENRMVG 187 (213)
T ss_pred CCccccCHHHHH------HHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----HhCCCEEE
Confidence 345789999999 9999999874 57899999999999999999999999887 23478999
Q ss_pred EEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1169 VITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1169 ~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
+|||+++++..+|+++.+.+.|+++
T Consensus 188 ~itH~~~~~~~~~~~i~~~~~~~~~ 212 (213)
T cd03279 188 VISHVEELKERIPQRLEVIKTPGGS 212 (213)
T ss_pred EEECchHHHHhhCcEEEEEecCCCC
Confidence 9999999999888777777666554
No 370
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.37 E-value=8.7e-13 Score=160.09 Aligned_cols=98 Identities=21% Similarity=0.196 Sum_probs=81.5
Q ss_pred HHHHcCCcc-ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEE
Q 000957 1089 VLMQTGDAE-LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQL 1167 (1209)
Q Consensus 1089 ~~~~~~~~~-~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~ 1167 (1209)
++..++... ...++.||||||+ |++||++|+.+|++|+|||||++||+.++..|.+.|.++ +.+|
T Consensus 146 ~l~~~~l~~~~~~~~~LSgGqkq------rv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--------~~tv 211 (552)
T TIGR03719 146 AMDALRCPPWDADVTKLSGGERR------RVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--------PGTV 211 (552)
T ss_pred HHhhCCCCcccCchhhcCHHHHH------HHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--------CCeE
Confidence 344444322 2345789999999 999999999999999999999999999999999988764 2489
Q ss_pred EEEecCHHHHHHhhhHhhhhcCcEEe-ecCCccc
Q 000957 1168 IVITHDERFAQLIGQRQHAEKYYRVA-KDDHQHS 1200 (1209)
Q Consensus 1168 i~itH~~~~~~~~~~~~~~~~~~~v~-~~~~~~s 1200 (1209)
||||||..++..+||+++....|++. ..|+...
T Consensus 212 IiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~ 245 (552)
T TIGR03719 212 VAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSS 245 (552)
T ss_pred EEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHH
Confidence 99999999999999999999999975 5565443
No 371
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.36 E-value=1.3e-12 Score=158.49 Aligned_cols=125 Identities=25% Similarity=0.176 Sum_probs=92.5
Q ss_pred Hhhhcccc---cC-CcchhhhhhccCCccc-cchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1055 IRELWQQT---YR-GQDIDYIRIHSDSEGA-GTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1055 ~~~~~~~~---~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
++++++.. ++ .+..+++.+....... ........++..++... ...++.|||||++ |++||++|+.
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q------rv~la~al~~ 462 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERN------RLHLAKTLKQ 462 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHH------HHHHHHHHhc
Confidence 67777753 22 3566666543221111 11112234566666532 3456899999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcC-cEEe
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKY-YRVA 1193 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~-~~v~ 1193 (1209)
+|++|||||||+|||+.++..|.++|..+ .| +||+||||+.++..+||+++.... |.+.
T Consensus 463 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-------~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 463 GGNVLLLDEPTNDLDVETLRALEEALLEF-------PG-CAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC-------CC-eEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 99999999999999999999999998875 24 799999999999999999888875 5554
No 372
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.3e-12 Score=143.37 Aligned_cols=80 Identities=25% Similarity=0.336 Sum_probs=71.5
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
+.+.||||=|+ |+|||||+..+|++|+|||||++||..++.-|.++|... ..|+||||||..|+..
T Consensus 195 pt~slSGGWrM------rlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--------~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 195 PTKSLSGGWRM------RLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--------KITSLIVSHDRNFLNT 260 (582)
T ss_pred cccccCcchhh------HHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--------CceEEEEeccHHHHHH
Confidence 34789999999 999999999999999999999999999999999988765 3799999999999999
Q ss_pred hhhHhhhhcCcEEe
Q 000957 1180 IGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~ 1193 (1209)
+|++++-.+.-++.
T Consensus 261 V~tdIIH~~~~kL~ 274 (582)
T KOG0062|consen 261 VCTDIIHLENLKLD 274 (582)
T ss_pred HHHHHHHHhhhhhh
Confidence 99998876655543
No 373
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.36 E-value=8.5e-13 Score=140.17 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=64.6
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHH--HHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAA--ALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~--~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
.+..|||||++ |++||++|+.+|++|||||||++||+.++..+.+ ++..+ ...|.++|+|||+..++
T Consensus 137 ~~~~LS~G~~q------rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-----~~~~~tii~~sH~~~~~ 205 (218)
T cd03290 137 RGINLSGGQRQ------RICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-----QDDKRTLVLVTHKLQYL 205 (218)
T ss_pred CCCcCCHHHHH------HHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-----hcCCCEEEEEeCChHHH
Confidence 45789999999 9999999999999999999999999999999988 55544 33578999999999998
Q ss_pred HHhhhHhhhh
Q 000957 1178 QLIGQRQHAE 1187 (1209)
Q Consensus 1178 ~~~~~~~~~~ 1187 (1209)
. .||+++..
T Consensus 206 ~-~~d~i~~l 214 (218)
T cd03290 206 P-HADWIIAM 214 (218)
T ss_pred h-hCCEEEEe
Confidence 5 46655444
No 374
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.6e-12 Score=146.91 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=103.6
Q ss_pred Hhhhcccc--c-CCcchhhhhhccCCcc-------ccchhHHHHHHHHcCCc--cccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1055 IRELWQQT--Y-RGQDIDYIRIHSDSEG-------AGTRSYSYKVLMQTGDA--ELEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1055 ~~~~~~~~--~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+..+||.+ + .-+.+++|.+...+.. ...+.....++...+.. ....++.||+||+| -++||+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ------~VeIAr 158 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQ------MVEIAR 158 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHH------HHHHHH
Confidence 44566665 2 2356777665433321 11223444566666542 33456899999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
|++.++.++||||||++|++..+..|...++.+ ...|.+||+|||.++.+..+||++.+++.|+++...+
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~L-----k~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRL-----KAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----HhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999999999998 5689999999999999999999999999999988765
No 375
>PLN03232 ABC transporter C family member; Provisional
Probab=99.36 E-value=1.1e-12 Score=175.11 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=111.1
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCC----------cc--c-cccCCCChhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGD----------AE--L-EMRGRCSAGQKVL 1111 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~-~~~~~lSgG~k~l 1111 (1209)
....+++.++.++|.+ |+||..++|....... ......++...+. -+ . +....|||||||
T Consensus 1304 ~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ- 1378 (1495)
T PLN03232 1304 GLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ- 1378 (1495)
T ss_pred CHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH-
Confidence 3567889999999998 6999999987643211 1122222222221 11 1 122479999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
|++|||||+++|++|+|||||++||+.+...+.+.|+.. -.+.|+|+|+|+++.+.. ||+++++..|+
T Consensus 1379 -----rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~------~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ 1446 (1495)
T PLN03232 1379 -----LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE------FKSCTMLVIAHRLNTIID-CDKILVLSSGQ 1446 (1495)
T ss_pred -----HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH------cCCCEEEEEeCCHHHHHh-CCEEEEEECCE
Confidence 999999999999999999999999999999999988876 257899999999999986 89999999999
Q ss_pred EeecCCcccccccc
Q 000957 1192 VAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1192 v~~~~~~~s~~~~~ 1205 (1209)
|+..|++...+...
T Consensus 1447 ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1447 VLEYDSPQELLSRD 1460 (1495)
T ss_pred EEEECCHHHHHhCC
Confidence 99999888776543
No 376
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.36 E-value=1.6e-12 Score=157.90 Aligned_cols=124 Identities=24% Similarity=0.318 Sum_probs=90.2
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccc------hhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhHH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGT------RSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl~ 1115 (1209)
...+++.+++++|.+ |+|+..+++.+......... .......+...+ +-+ . +....|||||||
T Consensus 391 ~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q----- 465 (529)
T TIGR02857 391 ADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ----- 465 (529)
T ss_pred HHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH-----
Confidence 456778899999997 68999999877432111110 001112222221 111 1 223579999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHh
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQ 1184 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~ 1184 (1209)
|++|||+|+++|++++|||||++||+.+...+.+.|..+ ..|.|+|+|||++..+. .||++
T Consensus 466 -ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~------~~~~t~i~itH~~~~~~-~~d~i 526 (529)
T TIGR02857 466 -RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRAL------AQGRTVLLVTHRLALAE-RADRI 526 (529)
T ss_pred -HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHh------cCCCEEEEEecCHHHHH-hCCEE
Confidence 999999999999999999999999999999999999876 25789999999999885 35544
No 377
>PLN03130 ABC transporter C family member; Provisional
Probab=99.35 E-value=1.3e-12 Score=174.38 Aligned_cols=141 Identities=17% Similarity=0.192 Sum_probs=111.2
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCC----------cc--c-cccCCCChhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGD----------AE--L-EMRGRCSAGQKVL 1111 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~-~~~~~lSgG~k~l 1111 (1209)
....+++.++.++|.+ |.||..++|....... ....+.++...+. -+ . +....|||||||
T Consensus 1307 ~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQ- 1381 (1622)
T PLN03130 1307 GLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ- 1381 (1622)
T ss_pred CHHHHHhccEEECCCCccccccHHHHhCcCCCCC----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHH-
Confidence 3568889999999998 7999999987643211 1122222222211 11 1 122479999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
|++|||||+++|++|||||||++||+.+-..+.+.|++. -.|.|+|+|+|+...+.. ||+++++..|+
T Consensus 1382 -----rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~------~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~ 1449 (1622)
T PLN03130 1382 -----LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE------FKSCTMLIIAHRLNTIID-CDRILVLDAGR 1449 (1622)
T ss_pred -----HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH------CCCCEEEEEeCChHHHHh-CCEEEEEECCE
Confidence 999999999999999999999999999999999999886 247899999999999975 89999999999
Q ss_pred EeecCCccccccc
Q 000957 1192 VAKDDHQHSIIEA 1204 (1209)
Q Consensus 1192 v~~~~~~~s~~~~ 1204 (1209)
|+..|++...+..
T Consensus 1450 IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1450 VVEFDTPENLLSN 1462 (1622)
T ss_pred EEEeCCHHHHHhC
Confidence 9999988877654
No 378
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.35 E-value=1.7e-12 Score=157.81 Aligned_cols=115 Identities=28% Similarity=0.319 Sum_probs=83.9
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccc------hhHHHHHHHHcC-Ccc--c-cccCCCChhhhhhhhHH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGT------RSYSYKVLMQTG-DAE--L-EMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~--~-~~~~~lSgG~k~l~sl~ 1115 (1209)
...+++.+++++|.+ |+|+..++|.+......... .......+...+ +.+ . +....|||||||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ----- 477 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ----- 477 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH-----
Confidence 356778899999998 69999999987432111110 011122222221 111 1 122469999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
|+||||||+.+||+|+|||||++||+.+...+.+.|... ..+.|+|+|||++
T Consensus 478 -RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~------~~~~TvIiItHrl 529 (529)
T TIGR02868 478 -RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA------LSGKTVVVITHHL 529 (529)
T ss_pred -HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh------cCCCEEEEEecCC
Confidence 999999999999999999999999999999999998875 3578999999974
No 379
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.35 E-value=1.1e-12 Score=137.66 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=65.1
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHH-HHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAA-LHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~-l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
.+..|||||++ |++||++|+.+|++++|||||++||+.+...+... +... ...|.++|+|||+..++.
T Consensus 124 ~~~~lS~G~~q------rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~-----~~~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 124 KGINLSGGQKQ------RISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGL-----LLNNKTRILVTHQLQLLP 192 (204)
T ss_pred CCCcCCHHHHH------HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-----ccCCCEEEEEeCCHHHHh
Confidence 34689999999 99999999999999999999999999999988874 5554 234789999999999998
Q ss_pred HhhhHhhhhc
Q 000957 1179 LIGQRQHAEK 1188 (1209)
Q Consensus 1179 ~~~~~~~~~~ 1188 (1209)
. |++++.+.
T Consensus 193 ~-~d~i~~l~ 201 (204)
T cd03250 193 H-ADQIVVLD 201 (204)
T ss_pred h-CCEEEEEe
Confidence 6 66655443
No 380
>PRK01156 chromosome segregation protein; Provisional
Probab=99.34 E-value=2.1e-05 Score=102.24 Aligned_cols=53 Identities=30% Similarity=0.506 Sum_probs=48.2
Q ss_pred ccccccchhhhhh-hhhcCCHHhhhhheeeccCCCCCCCC-CchhhHHhhHHhhh
Q 000957 23 LSYRCADMDREVP-ALMGVSKAILENVIFVHQDEANWPLQ-DPSTLKKKFDDIFS 75 (1209)
Q Consensus 23 ~s~k~~~~d~~~~-~~lgvs~ail~~VifchQees~wpl~-ep~~Lkk~fDdIf~ 75 (1209)
++..+.+++..|+ .++|+++.+|-|+|||||+++.|++. .|+.+++.||+|||
T Consensus 106 ~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ld~~~~ 160 (895)
T PRK01156 106 IAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILE 160 (895)
T ss_pred ccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHHHHHHhC
Confidence 4566789999998 89999999999999999999999995 89999999999988
No 381
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.34 E-value=2.1e-12 Score=156.83 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=92.0
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCccc--------cccCCCChhhhhhhhHHHHH
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAEL--------EMRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~lSgG~k~l~sl~ir~ 1118 (1209)
..++..+++++|.+ |.++..+++ . +..........+...+..+. +....||||||| |+
T Consensus 412 ~~~~~~i~~v~q~~~lf~~ti~~n~----~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q------Rl 479 (555)
T TIGR01194 412 DDYRDLFSAIFADFHLFDDLIGPDE----G--EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK------RL 479 (555)
T ss_pred HHHHhhCcEEccChhhhhhhhhccc----c--cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH------HH
Confidence 45566778888876 355544332 0 11111223344444443321 123579999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHH-HHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALH-RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~-~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
+|||+++.+|++|+|||||++||+.+...+.+.+. .+ ...|.|+|+|||++..+. .||++++...|+|..+
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~-----~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDL-----KRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-----HhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999987654 33 235789999999999775 7888888888888654
No 382
>PRK03918 chromosome segregation protein; Provisional
Probab=99.34 E-value=8.6e-06 Score=106.19 Aligned_cols=247 Identities=19% Similarity=0.235 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHH
Q 000957 934 TKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHF 1013 (1209)
Q Consensus 934 ~~~~l~~l~~ei~~l~~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~ 1013 (1209)
....+..+..++..+..++..++. ..-...+..+...+..+...+..+.+.+..+.+.+..+..++. .+......+.
T Consensus 631 ~~~~i~~l~~~i~~l~~~~~~l~~-~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~--~~~~~~~~l~ 707 (880)
T PRK03918 631 AFEELAETEKRLEELRKELEELEK-KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLE--KLKEELEERE 707 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 334455566666666666666642 2223666777777777777777777777777777777777766 3444444555
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCccccchhHHHHHHHHc
Q 000957 1014 DQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQT 1093 (1209)
Q Consensus 1014 ~~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1093 (1209)
....++.........+..+...+...........+..|+..++.+|..+++| .+..+.+..+. +.+.++...
T Consensus 708 ~~~~~~~~l~~~~~~l~~lr~~~~~~~~~l~~~~~~~l~~~~~~if~~l~~~-~~~~~~l~~~~-------~~~~i~~l~ 779 (880)
T PRK03918 708 KAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEIFEELTEG-KYSGVRVKAEE-------NKVKLFVVY 779 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CeeEEEEecCC-------CceEEEEeC
Confidence 5555566656566666666665655555555556778888888888876533 23332221110 111222222
Q ss_pred CCccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecC
Q 000957 1094 GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHD 1173 (1209)
Q Consensus 1094 ~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~ 1173 (1209)
|+. ..+++.|||||+++++|++|+|||++++.+||+|||||||+|||+.++..+..+|..+. ..|.||||||||
T Consensus 780 ~g~-~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~-----~~~~~iiiith~ 853 (880)
T PRK03918 780 QGK-ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYL-----RKIPQVIIVSHD 853 (880)
T ss_pred CCC-cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHH-----hcCCEEEEEECC
Confidence 332 34557899999999999999999999999999999999999999999999999998873 346799999999
Q ss_pred HHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1174 ERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1174 ~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.++. ++++.+.|.+.+ |.|.|..
T Consensus 854 ~~~~~------~~d~~~~l~~~~-~~s~~~~ 877 (880)
T PRK03918 854 EELKD------AADYVIRVSLEG-GVSKVEV 877 (880)
T ss_pred HHHHH------hCCeEEEEEecC-CeeEEEe
Confidence 99875 678888887776 5665543
No 383
>PRK13409 putative ATPase RIL; Provisional
Probab=99.34 E-value=1.8e-12 Score=156.15 Aligned_cols=91 Identities=20% Similarity=0.252 Sum_probs=79.4
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
...++..++... ...++.|||||+| |++||++|+.+|++|+|||||++||+.++..+.++|..+ ..
T Consensus 193 ~~~~l~~l~l~~~~~~~~~~LSgGe~q------rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l-----~~- 260 (590)
T PRK13409 193 LDEVVERLGLENILDRDISELSGGELQ------RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL-----AE- 260 (590)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHH------HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-----HC-
Confidence 445666666543 3456899999999 999999999999999999999999999999999999988 34
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEK 1188 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~ 1188 (1209)
|.+|||||||+.++..+||++.+++
T Consensus 261 g~tvIivsHd~~~l~~~~D~v~vl~ 285 (590)
T PRK13409 261 GKYVLVVEHDLAVLDYLADNVHIAY 285 (590)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 8899999999999999999987774
No 384
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=4e-12 Score=118.36 Aligned_cols=93 Identities=25% Similarity=0.336 Sum_probs=79.7
Q ss_pred hHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1084 SYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1084 ~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
..+..++.+.+.++ .-.|+.+||||+| |+-|||.|+.+-|+|+|||||+.||..|+..+.++|.+-
T Consensus 130 ~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ------RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~----- 198 (235)
T COG4778 130 AKAADLLTRLNLPERLWSLAPATFSGGEQQ------RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA----- 198 (235)
T ss_pred HHHHHHHHHcCCCHHHhcCCCcccCCchhe------ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-----
Confidence 34555677766654 3456899999999 999999999999999999999999999999999999886
Q ss_pred cCCCcEEEEEecCHHHHHHhhhHhhhh
Q 000957 1161 GQENFQLIVITHDERFAQLIGQRQHAE 1187 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~~~~~~~~~~~~~~ 1187 (1209)
...|..+|=|-||.+.-+.+||+.+-.
T Consensus 199 Ka~GaAlvGIFHDeevre~vadR~~~~ 225 (235)
T COG4778 199 KARGAALVGIFHDEEVREAVADRLLDV 225 (235)
T ss_pred HhcCceEEEeeccHHHHHHHhhheeec
Confidence 568999999999999999888776543
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.34 E-value=2.8e-12 Score=141.18 Aligned_cols=139 Identities=20% Similarity=0.188 Sum_probs=113.0
Q ss_pred HHHHHHHHhhhccccc---CCcchhhhhhccCCcc------ccchhHHHHHHHHcCCc--cccccCCCChhhhhhhhHHH
Q 000957 1048 MEEINKIIRELWQQTY---RGQDIDYIRIHSDSEG------AGTRSYSYKVLMQTGDA--ELEMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~lSgG~k~l~sl~i 1116 (1209)
...++.=|+++||+|. .-|..++|.+...... ...+..+..+....|.. +...++.||-|++|
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQ------ 147 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQ------ 147 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhH------
Confidence 4567777899999983 4578888887654321 12233455556666543 34567899999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|+-|.++|+.+|.+|||||||+-|-|..+..|...|+.+ ...|.+||+|||.+..+..+||++-+++.|+|+..-
T Consensus 148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l-----~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRL-----AAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-----HHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 999999999999999999999999999999999999988 567999999999999999999999999999987654
Q ss_pred C
Q 000957 1197 H 1197 (1209)
Q Consensus 1197 ~ 1197 (1209)
+
T Consensus 223 ~ 223 (501)
T COG3845 223 D 223 (501)
T ss_pred c
Confidence 3
No 386
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.33 E-value=2.8e-12 Score=169.41 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=70.8
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
...||||||| |++|||||+.+|++|||||||++||+.+...+...|..+. ...|.|+|+|||++.++ ..
T Consensus 577 g~~LSGGQkQ------RiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~----~~~g~TvIiIsHrls~i-~~ 645 (1466)
T PTZ00265 577 ASKLSGGQKQ------RISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK----GNENRITIIIAHRLSTI-RY 645 (1466)
T ss_pred CCcCCHHHHH------HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh----hcCCCEEEEEeCCHHHH-Hh
Confidence 4679999999 9999999999999999999999999999999999999872 23578999999999998 47
Q ss_pred hhHhhhhcCc
Q 000957 1181 GQRQHAEKYY 1190 (1209)
Q Consensus 1181 ~~~~~~~~~~ 1190 (1209)
||++++++.|
T Consensus 646 aD~Iivl~~g 655 (1466)
T PTZ00265 646 ANTIFVLSNR 655 (1466)
T ss_pred CCEEEEEeCC
Confidence 8888888765
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.33 E-value=2.5e-12 Score=138.80 Aligned_cols=89 Identities=29% Similarity=0.388 Sum_probs=76.2
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCL----NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~----~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
+..|||||++ |++||++++. +|++++|||||++||+..+..|...|..+ ...|.+||+|||+..+
T Consensus 153 ~~~LS~G~k~------rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~-----~~~g~~vi~isH~~~~ 221 (247)
T cd03275 153 MDNLSGGEKT------MAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQ-----AGPNFQFIVISLKEEF 221 (247)
T ss_pred HHHcCHHHHH------HHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHh-----ccCCcEEEEEECCHHH
Confidence 3689999999 9999999875 58999999999999999999999999987 3348899999999988
Q ss_pred HHHhhhHhhhhcCcEEeecCC-ccccccccc
Q 000957 1177 AQLIGQRQHAEKYYRVAKDDH-QHSIIEAQE 1206 (1209)
Q Consensus 1177 ~~~~~~~~~~~~~~~v~~~~~-~~s~~~~~~ 1206 (1209)
+. .+++.+.+.++++ +.|.+..+.
T Consensus 222 ~~------~~d~i~~~~~~~~~~~~~~~~~~ 246 (247)
T cd03275 222 FS------KADALVGVYRDQECNSSKVLTLD 246 (247)
T ss_pred Hh------hCCeEEEEEecCCCCcceEEecc
Confidence 86 6788888989865 677776654
No 388
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.32 E-value=2.9e-12 Score=155.71 Aligned_cols=131 Identities=19% Similarity=0.159 Sum_probs=93.8
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCccc-c------ccCCCChhhhhhhhHHHHH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAEL-E------MRGRCSAGQKVLASLIIRL 1118 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~lSgG~k~l~sl~ir~ 1118 (1209)
...+++.+++++|.+ |+++..++ + ..........++...+.... . ....|||||+| |+
T Consensus 392 ~~~~~~~i~~v~q~~~lf~~ti~~n-----~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~q------Rl 458 (547)
T PRK10522 392 PEDYRKLFSAVFTDFHLFDQLLGPE-----G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKK------RL 458 (547)
T ss_pred HHHHhhheEEEecChhHHHHhhccc-----c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHH------HH
Confidence 345667778888876 35543332 0 01111223334444443221 1 02479999999 99
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
+|||+|+.+|++|+|||||++||+.+...+.+.|.... ...|.|+|+|||+...+. .||+++....|++....
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~----~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLL----QEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH----HhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999998887653 124789999999998765 78998888888887663
No 389
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.32 E-value=2.7e-12 Score=157.13 Aligned_cols=141 Identities=21% Similarity=0.132 Sum_probs=109.5
Q ss_pred HHHHHHhhhcccc--cC-CcchhhhhhccCCcc------ccchhHHHHHHHHcCCcc--ccccC------CCChhhhhhh
Q 000957 1050 EINKIIRELWQQT--YR-GQDIDYIRIHSDSEG------AGTRSYSYKVLMQTGDAE--LEMRG------RCSAGQKVLA 1112 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~------~lSgG~k~l~ 1112 (1209)
.+++.+++++|.. ++ .+..+++.+...... ......+..++..+|..+ ...++ .||||||+
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrk-- 173 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERK-- 173 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhh--
Confidence 3456678888875 33 478888876433221 112234556666666543 23333 59999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH-HHHHhhhHhhhhcCcE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER-FAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~-~~~~~~~~~~~~~~~~ 1191 (1209)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+.+ ...|.|+|++||++. .+-.+||++.++..|+
T Consensus 174 ----Rvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l-----~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~ 244 (617)
T TIGR00955 174 ----RLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL-----AQKGKTIICTIHQPSSELFELFDKIILMAEGR 244 (617)
T ss_pred ----HHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHH-----HhCCCEEEEEeCCCCHHHHHHhceEEEeeCCe
Confidence 999999999999999999999999999999999999988 335889999999985 6788999999999999
Q ss_pred EeecCCcccc
Q 000957 1192 VAKDDHQHSI 1201 (1209)
Q Consensus 1192 v~~~~~~~s~ 1201 (1209)
+...|++...
T Consensus 245 ~v~~G~~~~~ 254 (617)
T TIGR00955 245 VAYLGSPDQA 254 (617)
T ss_pred EEEECCHHHH
Confidence 9999976554
No 390
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.32 E-value=2.8e-12 Score=170.96 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=110.6
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc------------cc-ccCCCChhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE------------LE-MRGRCSAGQKVL 1111 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~lSgG~k~l 1111 (1209)
....+++.+++++|.+ |+||..++|...... .....+.++...+..+ .. ....|||||||
T Consensus 1286 ~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ- 1360 (1490)
T TIGR01271 1286 TLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ- 1360 (1490)
T ss_pred CHHHHHhceEEEeCCCccCccCHHHHhCcccCC----CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH-
Confidence 3567889999999998 699999998543211 1123334444333221 11 11369999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
|++|||||+++|+||+|||||++||+.+-..+.+.|+..+ .++|+|+|||+++.+.. ||+++++..|+
T Consensus 1361 -----rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~------~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ 1428 (1490)
T TIGR01271 1361 -----LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF------SNCTVILSEHRVEALLE-CQQFLVIEGSS 1428 (1490)
T ss_pred -----HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc------CCCEEEEEecCHHHHHh-CCEEEEEECCE
Confidence 9999999999999999999999999999999999998762 46899999999999875 89999999999
Q ss_pred EeecCCcccccc
Q 000957 1192 VAKDDHQHSIIE 1203 (1209)
Q Consensus 1192 v~~~~~~~s~~~ 1203 (1209)
|+..|++...+.
T Consensus 1429 ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1429 VKQYDSIQKLLN 1440 (1490)
T ss_pred EEEeCCHHHHHc
Confidence 999998877664
No 391
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.32 E-value=2.9e-12 Score=157.63 Aligned_cols=138 Identities=18% Similarity=0.250 Sum_probs=105.4
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCC---ccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDS---EGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++|+.. |+ .+..+++.+.... ...........++..++..+ ...++.|||||++ |++||++|
T Consensus 86 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~q------rv~LAraL 159 (648)
T PRK10535 86 EHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQ------RVSIARAL 159 (648)
T ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHH------HHHHHHHH
Confidence 4567777766 33 3556666542211 11112234455666666544 3455889999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+.+|++|+|||||++||+.+...+.++|.++ ...|.++|+|||+.+++. .||+++....|++...|+...+.
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l-----~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQL-----RDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-----HhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999987 235789999999999886 69999999999999999776554
No 392
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=2.6e-12 Score=157.24 Aligned_cols=165 Identities=23% Similarity=0.266 Sum_probs=125.1
Q ss_pred HHhHHHHHHHHHHHH----HHHhhhcHHHHHHHHhhhcccc--cCCcchhhhhhccCC-c-----cccchhHHHHHHHHc
Q 000957 1026 NKDLDRYYNALDKAL----MRFHTMKMEEINKIIRELWQQT--YRGQDIDYIRIHSDS-E-----GAGTRSYSYKVLMQT 1093 (1209)
Q Consensus 1026 ~~~l~~~~~~l~~~~----~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~ 1093 (1209)
+.=|++||+.....+ ..........+++.++-+-|.+ |.+|..++|.+.... . .+.+...+.+.+...
T Consensus 1033 I~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sL 1112 (1228)
T KOG0055|consen 1033 ISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSL 1112 (1228)
T ss_pred HHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcC
Confidence 344666665544332 2245566778999999999988 899999999886222 1 112223344444433
Q ss_pred -CCcc--c-cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEE
Q 000957 1094 -GDAE--L-EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIV 1169 (1209)
Q Consensus 1094 -~~~~--~-~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 1169 (1209)
.+.+ . +...+||||||| |+|||||++.+|++|+|||.|++||.+.-.-+-++|... ..|.|.||
T Consensus 1113 P~GyDT~vGerG~QLSGGQKQ------RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a------~~gRT~Iv 1180 (1228)
T KOG0055|consen 1113 PQGYDTRVGERGVQLSGGQKQ------RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA------MEGRTTIV 1180 (1228)
T ss_pred cCcccCccCcccCcCCchHHH------HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh------hcCCcEEE
Confidence 2332 2 334689999999 999999999999999999999999999999999999886 36789999
Q ss_pred EecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1170 ITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1170 itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
|.|.+..+. -||.+.+...|.|...|+-...+.
T Consensus 1181 IAHRLSTIq-naD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1181 IAHRLSTIQ-NADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred Eecchhhhh-cCCEEEEEECCEEEecccHHHHHh
Confidence 999999996 689999999999999997666654
No 393
>PTZ00243 ABC transporter; Provisional
Probab=99.31 E-value=4.6e-12 Score=168.92 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=109.7
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc------------c-cccCCCChhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE------------L-EMRGRCSAGQKVL 1111 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~lSgG~k~l 1111 (1209)
....+++.++.++|.+ |.||..++|....... ...+...+...+..+ . .....|||||||
T Consensus 1378 ~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQ- 1452 (1560)
T PTZ00243 1378 GLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ- 1452 (1560)
T ss_pred CHHHHHhcceEECCCCccccccHHHHhCcccCCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHH-
Confidence 3568899999999997 6899999996532111 122333333332211 1 122479999999
Q ss_pred hhHHHHHHHHHHhccC-CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCc
Q 000957 1112 ASLIIRLALAETFCLN-CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYY 1190 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~-~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~ 1190 (1209)
|++|||||+++ |+||||||||++||+.+-..+.+.|...+ .+.|+|+|+|+...+. .||+++++..|
T Consensus 1453 -----rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~------~~~TvI~IAHRl~ti~-~~DrIlVLd~G 1520 (1560)
T PTZ00243 1453 -----LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF------SAYTVITIAHRLHTVA-QYDKIIVMDHG 1520 (1560)
T ss_pred -----HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC------CCCEEEEEeccHHHHH-hCCEEEEEECC
Confidence 99999999995 89999999999999999999999888762 4689999999999996 58999999999
Q ss_pred EEeecCCcccccc
Q 000957 1191 RVAKDDHQHSIIE 1203 (1209)
Q Consensus 1191 ~v~~~~~~~s~~~ 1203 (1209)
+|...|++...+.
T Consensus 1521 ~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1521 AVAEMGSPRELVM 1533 (1560)
T ss_pred EEEEECCHHHHHh
Confidence 9999998877764
No 394
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.31 E-value=3e-12 Score=171.29 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=109.8
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcC----------Ccc--c-cccCCCChhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTG----------DAE--L-EMRGRCSAGQKVL 1111 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--~-~~~~~lSgG~k~l 1111 (1209)
....+++.++.++|.+ |.||..+++....... ....+.++...+ +-+ . +....|||||||
T Consensus 1354 ~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ- 1428 (1522)
T TIGR00957 1354 GLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ- 1428 (1522)
T ss_pred CHHHHHhcCeEECCCCcccCccHHHHcCcccCCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH-
Confidence 3568899999999997 6999999986432111 112222222222 111 1 122479999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
|++|||||+.+|++|+|||||++||+.+-..+.+.|+.. -.+.|+|+|+|+...+.. ||+++++..|+
T Consensus 1429 -----rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~------~~~~TvI~IAHRl~ti~~-~DrIlVld~G~ 1496 (1522)
T TIGR00957 1429 -----LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ------FEDCTVLTIAHRLNTIMD-YTRVIVLDKGE 1496 (1522)
T ss_pred -----HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH------cCCCEEEEEecCHHHHHh-CCEEEEEECCE
Confidence 999999999999999999999999999999999988876 257899999999999875 79999999999
Q ss_pred EeecCCccccccc
Q 000957 1192 VAKDDHQHSIIEA 1204 (1209)
Q Consensus 1192 v~~~~~~~s~~~~ 1204 (1209)
|+..|++...+..
T Consensus 1497 IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1497 VAEFGAPSNLLQQ 1509 (1522)
T ss_pred EEEECCHHHHHhC
Confidence 9999988776654
No 395
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.31 E-value=5.1e-12 Score=137.05 Aligned_cols=85 Identities=22% Similarity=0.251 Sum_probs=73.0
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFC----LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~----~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
..+..|||||++ |++||++|+ .+|++++|||||++||+.++..+...|.++ . .|.++|+|||+.
T Consensus 162 ~~~~~lS~G~~q------r~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-----~-~g~~ii~iSH~~ 229 (251)
T cd03273 162 ESLTELSGGQRS------LVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-----F-KGSQFIVVSLKE 229 (251)
T ss_pred ccccccCHHHHH------HHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-----c-CCCEEEEEECCH
Confidence 356789999999 888888876 688999999999999999999999999887 2 478999999998
Q ss_pred HHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1175 RFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1175 ~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+++. .+|+.++|++.. +.|.|
T Consensus 230 ~~~~------~~d~v~~~~~~~-~~~~~ 250 (251)
T cd03273 230 GMFN------NANVLFRTRFVD-GTSTV 250 (251)
T ss_pred HHHH------hCCEEEEEEeeC-CEEec
Confidence 8887 688889999774 55554
No 396
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.3e-12 Score=124.50 Aligned_cols=88 Identities=24% Similarity=0.342 Sum_probs=81.8
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhh-
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIG- 1181 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~- 1181 (1209)
-+|||||. |.-|+..++.+|.+.|||||++|||..+...+++.+..+ ...|+.+++|||....+..+-
T Consensus 144 GFSGGEkK------R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l-----r~~~~~~liITHy~rll~~i~p 212 (251)
T COG0396 144 GFSGGEKK------RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL-----REEGRGVLIITHYQRLLDYIKP 212 (251)
T ss_pred CcCcchHH------HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH-----hcCCCeEEEEecHHHHHhhcCC
Confidence 59999999 999999999999999999999999999999999999998 567999999999999999985
Q ss_pred hHhhhhcCcEEeecCCccccc
Q 000957 1182 QRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1182 ~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
|.++++..|+|++.|.+ +++
T Consensus 213 D~vhvl~~GrIv~sG~~-el~ 232 (251)
T COG0396 213 DKVHVLYDGRIVKSGDP-ELA 232 (251)
T ss_pred CEEEEEECCEEEecCCH-HHH
Confidence 88999999999999966 554
No 397
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.27 E-value=1e-11 Score=152.96 Aligned_cols=112 Identities=18% Similarity=0.108 Sum_probs=81.5
Q ss_pred HHHhhhcccc--cCCcchhhhhhccCCc----cccchhHHHHHHHHcCCccc-----------cccCCCChhhhhhhhHH
Q 000957 1053 KIIRELWQQT--YRGQDIDYIRIHSDSE----GAGTRSYSYKVLMQTGDAEL-----------EMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----------~~~~~lSgG~k~l~sl~ 1115 (1209)
..+++++|.+ ++++..+++.+..... +.........++..++..+. ...+.|||||||
T Consensus 515 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQ----- 589 (659)
T TIGR00954 515 GKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQ----- 589 (659)
T ss_pred CcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHH-----
Confidence 4577888886 4677788876532110 00111233344544444321 123689999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
|++|||+|+++|++++|||||++||+.+...+.+.+.+ .|.|+|+|||+..++.
T Consensus 590 -Rl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--------~~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 590 -RIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--------FGITLFSVSHRKSLWK 643 (659)
T ss_pred -HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--------cCCEEEEEeCchHHHH
Confidence 99999999999999999999999999999988887654 2689999999999885
No 398
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=7.9e-12 Score=154.94 Aligned_cols=91 Identities=24% Similarity=0.291 Sum_probs=80.7
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
..+..|||||+| |++||++|+.+| .+|||||||+|||+..+..|..+|..+ ...|.+|||||||+++
T Consensus 483 r~~~tLSGGE~Q------Rv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L-----~~~G~TVIvVeHd~~~ 551 (924)
T TIGR00630 483 RAAGTLSGGEAQ------RIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL-----RDLGNTVIVVEHDEET 551 (924)
T ss_pred CCcCcCCHHHHH------HHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHH-----HhCCCEEEEEECCHHH
Confidence 345789999999 999999999876 899999999999999999999999998 3358899999999999
Q ss_pred HHHhhhHhhhh------cCcEEeecCCcccc
Q 000957 1177 AQLIGQRQHAE------KYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1177 ~~~~~~~~~~~------~~~~v~~~~~~~s~ 1201 (1209)
+. +||+++.+ +.|+|+..|++..+
T Consensus 552 i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 552 IR-AADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred Hh-hCCEEEEecccccCCCCEEeeccCHHHH
Confidence 86 89999988 88999888865544
No 399
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.24 E-value=5.8e-11 Score=131.36 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=75.0
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhh
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIG 1181 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~ 1181 (1209)
..||||+++ |+|||++|...|.+|+|||||+|||+..+.-|..+|..+ ...+++||+|+.+|+..+|
T Consensus 220 ~~~SgGwrm------R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-------d~~~lVi~sh~QDfln~vC 286 (614)
T KOG0927|consen 220 KDLSGGWRM------RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-------DRIILVIVSHSQDFLNGVC 286 (614)
T ss_pred hccCchHHH------HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-------cCceEEEEecchhhhhhHh
Confidence 579999999 999999999999999999999999999999998888876 2238999999999999999
Q ss_pred hHhhhhcCcE-EeecCCc
Q 000957 1182 QRQHAEKYYR-VAKDDHQ 1198 (1209)
Q Consensus 1182 ~~~~~~~~~~-v~~~~~~ 1198 (1209)
+.++...... +++.|+-
T Consensus 287 T~Ii~l~~kkl~~y~Gny 304 (614)
T KOG0927|consen 287 TNIIHLDNKKLIYYEGNY 304 (614)
T ss_pred hhhheecccceeeecCCH
Confidence 9998888777 6777743
No 400
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.8e-11 Score=117.24 Aligned_cols=100 Identities=26% Similarity=0.296 Sum_probs=76.8
Q ss_pred chhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHh
Q 000957 1067 DIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPN 1144 (1209)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~ 1144 (1209)
..+++.|.....+......++..+..+|... ..+.++||.||+. |+|||+..+.++|+.||||||++||..+
T Consensus 92 a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqR------RvAlArL~ls~~pLWiLDEP~taLDk~g 165 (209)
T COG4133 92 ALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQR------RVALARLWLSPAPLWILDEPFTALDKEG 165 (209)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHH------HHHHHHHHcCCCCceeecCcccccCHHH
Confidence 3444444333332222334566777777544 4456899999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1145 AESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1145 ~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
+..|..++... ...|-.||..||.+-.+
T Consensus 166 ~a~l~~l~~~H-----~~~GGiVllttHq~l~~ 193 (209)
T COG4133 166 VALLTALMAAH-----AAQGGIVLLTTHQPLPI 193 (209)
T ss_pred HHHHHHHHHHH-----hcCCCEEEEecCCccCC
Confidence 99999999887 46788999999987544
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.24 E-value=2.3e-11 Score=123.12 Aligned_cols=77 Identities=27% Similarity=0.292 Sum_probs=67.9
Q ss_pred CChhhhhhhhHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1104 CSAGQKVLASLIIRLALAETFC----LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~----~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
|||||++ |++||++++ .+|++++|||||++||+.+...+...|..+. ..|.|+|+|||+..++.
T Consensus 95 LS~Ge~~------r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~-----~~g~tiIiiSH~~~~~~- 162 (178)
T cd03239 95 LSGGEKS------LSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA-----KHTSQFIVITLKKEMFE- 162 (178)
T ss_pred CCHHHHH------HHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEECCHHHHh-
Confidence 9999999 999999875 6899999999999999999999999998872 34789999999999886
Q ss_pred hhhHhhhhcCcEEeecCC
Q 000957 1180 IGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~ 1197 (1209)
.++..+.|.+.+.
T Consensus 163 -----~adrvi~i~~~~~ 175 (178)
T cd03239 163 -----NADKLIGVLFVHG 175 (178)
T ss_pred -----hCCeEEEEEEeCC
Confidence 6888888888763
No 402
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=2.7e-05 Score=92.32 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=17.7
Q ss_pred cCCHHhhhhheeeccCCCCCCCC
Q 000957 39 GVSKAILENVIFVHQDEANWPLQ 61 (1209)
Q Consensus 39 gvs~ail~~VifchQees~wpl~ 61 (1209)
|+.||+. .|+||.-|-+.-|++
T Consensus 73 GiTkAsV-sVvFdNtdk~~SP~G 94 (1174)
T KOG0933|consen 73 GITKASV-SVVFDNTDKARSPLG 94 (1174)
T ss_pred cceeEEE-EEEecCCCcccCCCC
Confidence 4555554 489999999999998
No 403
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.23 E-value=3.6e-05 Score=93.36 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHcC
Q 000957 216 ISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHN 273 (1209)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1209)
++....++..+......+..++..+...++.++...+........++..+..+...+.
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQ 166 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555555555555555555555555555555555555555555555544
No 404
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.23 E-value=1.2e-11 Score=153.54 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=80.8
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
..+..|||||+| |++||++|+.+| .+|||||||+|||+..+..|..+|..+ ...|.||||||||+++
T Consensus 485 r~~~~LSgGE~Q------Rv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L-----~~~G~TVIvVeH~~~~ 553 (943)
T PRK00349 485 RSAGTLSGGEAQ------RIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHL-----RDLGNTLIVVEHDEDT 553 (943)
T ss_pred CchhhCCHHHHH------HHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHH-----HhCCCEEEEEeCCHHH
Confidence 345789999999 999999999886 899999999999999999999999998 3458899999999999
Q ss_pred HHHhhhHhhhh------cCcEEeecCCcccc
Q 000957 1177 AQLIGQRQHAE------KYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1177 ~~~~~~~~~~~------~~~~v~~~~~~~s~ 1201 (1209)
+. .||++..+ +-|+|+..|++..+
T Consensus 554 i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 554 IR-AADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred HH-hCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 86 69999988 88899888866554
No 405
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.22 E-value=2e-11 Score=115.07 Aligned_cols=116 Identities=18% Similarity=0.191 Sum_probs=100.4
Q ss_pred ccchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHH
Q 000957 1080 AGTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIM 1156 (1209)
Q Consensus 1080 ~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~ 1156 (1209)
..+...++.-+..+|..+ .-++..||.|||| |+||||||...|.++|.||..++||..-+..+.+++.++-
T Consensus 123 ~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQ------RVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 123 EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQ------RVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred HHHHHHHHHHHHHhccCccccccchhhcCchhHH------HHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence 334445666677776543 4567889999999 9999999999999999999999999999999999999882
Q ss_pred HhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccccc
Q 000957 1157 EDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1157 ~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~ 1205 (1209)
...|..+|.||.+..++.+++|.+++++.|.|+..|++.+++..+
T Consensus 197 ----ek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 197 ----EKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred ----HHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 345899999999999999999999999999999999998887654
No 406
>PLN03140 ABC transporter G family member; Provisional
Probab=99.22 E-value=1.8e-11 Score=160.86 Aligned_cols=137 Identities=15% Similarity=0.063 Sum_probs=103.8
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCCc------cccchhHHHHHHHHcCCccc--ccc-----CCCChhhhhhhhH
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDSE------GAGTRSYSYKVLMQTGDAEL--EMR-----GRCSAGQKVLASL 1114 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~-----~~lSgG~k~l~sl 1114 (1209)
..+.+++++|.. ++ .+..+++.+..... ......++..++..++..+. ..+ ..||||||+
T Consensus 951 ~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk---- 1026 (1470)
T PLN03140 951 FARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK---- 1026 (1470)
T ss_pred hhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH----
Confidence 345577888864 22 46777776532111 11122345567777776542 222 479999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH-HHHhhhHhhhhcC-cEE
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF-AQLIGQRQHAEKY-YRV 1192 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~-~~~~~~~~~~~~~-~~v 1192 (1209)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+.+ ...|.+||++||++.. +..+||+++.+.. |++
T Consensus 1027 --RvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l-----~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1027 --RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-----VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred --HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----HHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 999999999999999999999999999999999999998 3458899999999984 6778999999986 788
Q ss_pred eecCCc
Q 000957 1193 AKDDHQ 1198 (1209)
Q Consensus 1193 ~~~~~~ 1198 (1209)
...|+.
T Consensus 1100 v~~G~~ 1105 (1470)
T PLN03140 1100 IYSGPL 1105 (1470)
T ss_pred EEECCc
Confidence 888864
No 407
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.21 E-value=3.1e-11 Score=130.80 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=70.0
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFC----LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~----~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
..+..|||||++ |++||++|+ .+|++++|||||++||+.+...+...|.++ . .+.+||++||+.
T Consensus 154 ~~~~~lS~G~~~------r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~-----~-~~~~ii~~~h~~ 221 (243)
T cd03272 154 QEMQQLSGGQKS------LVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL-----S-DGAQFITTTFRP 221 (243)
T ss_pred ccccccCHHHHH------HHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH-----h-CCCEEEEEecCH
Confidence 345789999999 999999995 468999999999999999999999999887 2 268999999998
Q ss_pred HHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1175 RFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1175 ~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
.... .+++.+.+..+. +.|.|
T Consensus 222 ~~~~------~~d~i~~l~~~~-~~~~~ 242 (243)
T cd03272 222 ELLE------VADKFYGVKFRN-KVSTI 242 (243)
T ss_pred HHHh------hCCEEEEEEEEC-CEEee
Confidence 7664 566667776665 66554
No 408
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.9e-11 Score=131.14 Aligned_cols=144 Identities=22% Similarity=0.239 Sum_probs=104.4
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCcc------ccchhHHHHHHHHcCCcc---ccccC-CCChhhhhhhhHH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEG------AGTRSYSYKVLMQTGDAE---LEMRG-RCSAGQKVLASLI 1115 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~-~lSgG~k~l~sl~ 1115 (1209)
...+++.++.++|.+ |..+.+-++......-. +........++...+..- ..++| -|||||||
T Consensus 332 q~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq----- 406 (497)
T COG5265 332 QQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ----- 406 (497)
T ss_pred HHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH-----
Confidence 356777888899987 55555555544322111 111112222333322221 22333 49999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
|+||||+++.+||+|+|||.|++||..+-..+...|..+ ..|.|-+||.|.+..+. -+|.+++...|+|...
T Consensus 407 -rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~------~~~rttlviahrlsti~-~adeiivl~~g~i~er 478 (497)
T COG5265 407 -RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREV------SAGRTTLVIAHRLSTII-DADEIIVLDNGRIVER 478 (497)
T ss_pred -HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHH------hCCCeEEEEeehhhhcc-CCceEEEeeCCEEEec
Confidence 999999999999999999999999999999999999987 36789999999999886 3678889999999999
Q ss_pred CCccccccc
Q 000957 1196 DHQHSIIEA 1204 (1209)
Q Consensus 1196 ~~~~s~~~~ 1204 (1209)
|+..+.+..
T Consensus 479 g~h~~ll~~ 487 (497)
T COG5265 479 GTHEELLAA 487 (497)
T ss_pred CcHHHHHHc
Confidence 977776654
No 409
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.20 E-value=2.6e-11 Score=160.28 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=104.4
Q ss_pred HHHHHhhhcccc---cCCcchhhhhhccCCc------cccchhHHHHHHHHcCCccc--cccC----CCChhhhhhhhHH
Q 000957 1051 INKIIRELWQQT---YRGQDIDYIRIHSDSE------GAGTRSYSYKVLMQTGDAEL--EMRG----RCSAGQKVLASLI 1115 (1209)
Q Consensus 1051 i~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~----~lSgG~k~l~sl~ 1115 (1209)
+++.+++++|.. ...+..+++.+..... ......++..++..++..+. ..++ .||||||+
T Consensus 834 ~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrq----- 908 (1394)
T TIGR00956 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRK----- 908 (1394)
T ss_pred hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhh-----
Confidence 345677888863 3457888887643211 11122345567777665442 2334 69999999
Q ss_pred HHHHHHHHhccCCC-eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH-HHHhhhHhhhhcCc-EE
Q 000957 1116 IRLALAETFCLNCG-ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF-AQLIGQRQHAEKYY-RV 1192 (1209)
Q Consensus 1116 ir~~la~~~~~~~~-~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~-~~~~~~~~~~~~~~-~v 1192 (1209)
|++||++|+.+|+ +|+|||||+|||+.+...+.+.|+++ ...|.+||+|||++.. +...||+++.+..| ++
T Consensus 909 -Rl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l-----a~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i 982 (1394)
T TIGR00956 909 -RLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL-----ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQT 982 (1394)
T ss_pred -HHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH-----HHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence 9999999999996 99999999999999999999999998 3358899999999986 35679999999887 89
Q ss_pred eecCCc
Q 000957 1193 AKDDHQ 1198 (1209)
Q Consensus 1193 ~~~~~~ 1198 (1209)
...|+.
T Consensus 983 v~~G~~ 988 (1394)
T TIGR00956 983 VYFGDL 988 (1394)
T ss_pred EEECCc
Confidence 888864
No 410
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.20 E-value=3.6e-11 Score=124.27 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=67.7
Q ss_pred cccccCCCChhhhhhhhHHHHHHHHHHh----ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEec
Q 000957 1097 ELEMRGRCSAGQKVLASLIIRLALAETF----CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITH 1172 (1209)
Q Consensus 1097 ~~~~~~~lSgG~k~l~sl~ir~~la~~~----~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH 1172 (1209)
....++.|||||++ |++||+++ +.+|++++|||||++||+.++..+..+|.++.... ..+.++|+|||
T Consensus 103 ~~~~~~~lS~G~k~------r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~--~~~~~iii~th 174 (198)
T cd03276 103 AVRDVKTLSGGERS------FSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQ--PGRQFIFITPQ 174 (198)
T ss_pred cCCcccccChhHHH------HHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcC--CCcEEEEEECC
Confidence 34566899999999 88888887 58999999999999999999999999998873210 12358999999
Q ss_pred CHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1173 DERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1173 ~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
++..+..+ | .++|.+.+.
T Consensus 175 ~~~~i~~~-d------~v~~~~~~~ 192 (198)
T cd03276 175 DISGLASS-D------DVKVFRMKD 192 (198)
T ss_pred cccccccc-c------ceeEEEecC
Confidence 99999732 2 555655543
No 411
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.18 E-value=3.9e-11 Score=151.79 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=108.6
Q ss_pred HHHHHHhhhccccc---CCcchhhhhhccCCcc---ccchhHHHHHHHHcCCccc--cccCCCChhhhhhhhHHHHHHHH
Q 000957 1050 EINKIIRELWQQTY---RGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAEL--EMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+.+.+++.+|.-- .-|..+++.+.+...+ ......+.+++..++..+. ...+.||||+|. ||.+|
T Consensus 637 ~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kR------kLs~a 710 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKR------RLSFA 710 (885)
T ss_pred hhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchh------hHHHH
Confidence 36666777766531 2345666666554432 1222234556666676552 345899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
-+++.+|++++|||||||+||..++.++.++.++. ..|..+|++||.++.++.+|+|...+..|++..-|++...
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~-----k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLR-----KNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQEL 785 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH-----hcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHH
Confidence 99999999999999999999999999999999983 2334999999999999999999999999999998876443
No 412
>PLN03232 ABC transporter C family member; Provisional
Probab=99.18 E-value=1.7e-11 Score=163.79 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=100.0
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcC---------Ccc---c-cccCCCChhhhhhhhH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTG---------DAE---L-EMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~-~~~~~lSgG~k~l~sl 1114 (1209)
.++..++++.|.+ |+||..++|.+.... ... ....++...+ +.. . +....|||||||
T Consensus 676 ~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~-~~e---~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ---- 747 (1495)
T PLN03232 676 VIRGSVAYVPQVSWIFNATVRENILFGSDF-ESE---RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQ---- 747 (1495)
T ss_pred EecCcEEEEcCccccccccHHHHhhcCCcc-CHH---HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHH----
Confidence 4567788999987 689999999875421 111 1112222221 111 1 122369999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHH-HHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAA-LHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~-l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|++||||++.+|++|+|||||++||+.+...+... +... -.|.|+|+|||+..++. .||+++.+..|+|.
T Consensus 748 --RIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~------l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 748 --RVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE------LKGKTRVLVTNQLHFLP-LMDRIILVSEGMIK 818 (1495)
T ss_pred --HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh------hcCCEEEEEECChhhHH-hCCEEEEEeCCEEE
Confidence 99999999999999999999999999988877554 4433 25789999999999875 58999999999999
Q ss_pred ecCCccccc
Q 000957 1194 KDDHQHSII 1202 (1209)
Q Consensus 1194 ~~~~~~s~~ 1202 (1209)
..|+.....
T Consensus 819 ~~Gt~~eL~ 827 (1495)
T PLN03232 819 EEGTFAELS 827 (1495)
T ss_pred EecCHHHHH
Confidence 888655443
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.18 E-value=3.7e-11 Score=149.31 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=82.1
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNC---GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~---~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
..+..|||||+| |++||++|+.+| ++|||||||+|||+..+..|.++|..+. ..|.+||||||++.
T Consensus 826 ~~~~tLSgGEkQ------Rl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~-----~~G~TVIiitH~~~ 894 (943)
T PRK00349 826 QPATTLSGGEAQ------RVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLV-----DKGNTVVVIEHNLD 894 (943)
T ss_pred CCcccCCHHHHH------HHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEecCHH
Confidence 345789999999 999999999998 9999999999999999999999999882 35789999999999
Q ss_pred HHHHhhhHhhhh------cCcEEeecCCcccccc
Q 000957 1176 FAQLIGQRQHAE------KYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1176 ~~~~~~~~~~~~------~~~~v~~~~~~~s~~~ 1203 (1209)
++. .||+++.+ +-|+|+..|++..+..
T Consensus 895 ~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 895 VIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred HHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 985 69988888 6889999887766654
No 414
>PLN03130 ABC transporter C family member; Provisional
Probab=99.17 E-value=2.2e-11 Score=162.66 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=99.7
Q ss_pred HHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHH---------cCCcc---c-cccCCCChhhhhhhhHH
Q 000957 1051 INKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQ---------TGDAE---L-EMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---~-~~~~~lSgG~k~l~sl~ 1115 (1209)
++..++++.|.+ |+||..++|.+..... . .....++.. .++.. . +....|||||||
T Consensus 677 l~~~Iayv~Q~p~LfngTIreNI~fg~~~d-~---e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQ----- 747 (1622)
T PLN03130 677 IRGTVAYVPQVSWIFNATVRDNILFGSPFD-P---ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQ----- 747 (1622)
T ss_pred EcCeEEEEcCccccCCCCHHHHHhCCCccc-H---HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHH-----
Confidence 567789999987 6899999998754321 1 111122222 21111 1 122469999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHH-HHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLA-AALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~-~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++||||++.+|++|+|||||++||+.+...+. ..|.... .|.|+|+|||+..++. .||+++.+..|+|..
T Consensus 748 -RIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l------~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e 819 (1622)
T PLN03130 748 -RVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL------RGKTRVLVTNQLHFLS-QVDRIILVHEGMIKE 819 (1622)
T ss_pred -HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh------cCCEEEEEECCHhHHH-hCCEEEEEeCCEEEE
Confidence 999999999999999999999999999888765 4454441 4789999999999876 589999999999998
Q ss_pred cCCccccc
Q 000957 1195 DDHQHSII 1202 (1209)
Q Consensus 1195 ~~~~~s~~ 1202 (1209)
.|+.....
T Consensus 820 ~Gt~~eL~ 827 (1622)
T PLN03130 820 EGTYEELS 827 (1622)
T ss_pred eCCHHHHH
Confidence 88655443
No 415
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.17 E-value=7e-11 Score=123.47 Aligned_cols=80 Identities=24% Similarity=0.259 Sum_probs=66.5
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFC----LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~----~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.++.|||||++ |++||++++ .+|++++|||||+|||+..+..+.+.|..+ . .+.++|+|||+..
T Consensus 124 ~~~~lS~G~~~------r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~-----~-~~~~~iivs~~~~ 191 (212)
T cd03274 124 NISNLSGGEKT------LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKER-----T-KNAQFIVISLRNN 191 (212)
T ss_pred chhhcCHHHHH------HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHH-----c-CCCEEEEEECcHH
Confidence 45789999999 999999885 368999999999999999999999999986 2 4579999999976
Q ss_pred HHHHhhhHhhhhcCcEEeecCC
Q 000957 1176 FAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1176 ~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
... ++++.+.+.+.+.
T Consensus 192 ~~~------~~d~v~~~~~~~~ 207 (212)
T cd03274 192 MFE------LADRLVGIYKTNN 207 (212)
T ss_pred HHH------hCCEEEEEEecCC
Confidence 654 5666667766653
No 416
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2e-11 Score=132.14 Aligned_cols=145 Identities=22% Similarity=0.230 Sum_probs=106.8
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCc------cccchhHH-HHHHHHcCCcc--cccc-CCCChhhhhhhhH
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSE------GAGTRSYS-YKVLMQTGDAE--LEMR-GRCSAGQKVLASL 1114 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~--~~~~-~~lSgG~k~l~sl 1114 (1209)
++..++..++.++|.+ |+.+...+|.+..... .+.+...+ .+++.++.+.. ...+ -.|||||||
T Consensus 606 t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ---- 681 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ---- 681 (790)
T ss_pred HHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh----
Confidence 4567888999999998 6777777776632211 11111122 22333332222 1112 269999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|+||||+++..|.+++|||.|++||..+-+.+...|..++ .|.|-|||.|.+..+- -+|-+.+...|+|+.
T Consensus 682 --RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc------a~RTtIVvAHRLSTiv-nAD~ILvi~~G~IvE 752 (790)
T KOG0056|consen 682 --RVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC------ANRTTIVVAHRLSTIV-NADLILVISNGRIVE 752 (790)
T ss_pred --hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh------cCCceEEEeeeehhee-cccEEEEEeCCeEee
Confidence 9999999999999999999999999999999999999983 5678999999999885 367778888899988
Q ss_pred cCCccccccc
Q 000957 1195 DDHQHSIIEA 1204 (1209)
Q Consensus 1195 ~~~~~s~~~~ 1204 (1209)
.|.....+.+
T Consensus 753 rG~HeeLl~r 762 (790)
T KOG0056|consen 753 RGRHEELLKR 762 (790)
T ss_pred cCcHHHHHhc
Confidence 8876666544
No 417
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=2.9e-11 Score=110.19 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=87.0
Q ss_pred HHHHHhhhcccc--cCC-cchhhhhhc--cCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRG-QDIDYIRIH--SDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
-.+.++.+||.. |+. ++..++.+. .+..+..++..++..+...|... ...|.+||||||. |+||.|+
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrA------RvaL~R~ 148 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRA------RVALLRA 148 (213)
T ss_pred hhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHH------HHHHHHH
Confidence 356778888876 332 344444332 22223334445666777766544 4667899999999 9999999
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
|+..|.+++||||++.||..-+..+.+.+-.-. ...|...|.||||..-+.
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~----r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV----RAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH----HhcCCCeEEEecccccCC
Confidence 999999999999999999999998888776553 346889999999987664
No 418
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.16 E-value=4.3e-11 Score=132.43 Aligned_cols=95 Identities=25% Similarity=0.302 Sum_probs=81.9
Q ss_pred HHHHHcCCc---cccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1088 KVLMQTGDA---ELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1088 ~~~~~~~~~---~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
.++.++|.. ....+++||+|||. |++||+.++.+|.+|+|||||+|||...+..++++|.++ .
T Consensus 491 ~ilgrfgLtgd~q~~p~~~LS~Gqr~------rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--------~ 556 (614)
T KOG0927|consen 491 SILGRFGLTGDAQVVPMSQLSDGQRR------RVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--------P 556 (614)
T ss_pred HHHHHhCCCccccccchhhcccccch------hHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--------C
Confidence 355555543 23345899999999 999999999999999999999999999999999999886 2
Q ss_pred cEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
.+||+||||..++.+++..++.-..+.+....
T Consensus 557 Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 557 GGVVLVSHDFRLISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred CceeeeechhhHHHHHHHHhHhhccCceeecC
Confidence 47999999999999999999888888887765
No 419
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.15 E-value=0.00019 Score=94.94 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000957 404 QSELFAMDQKIKALNREKDVLAGDS-EDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLK 464 (1209)
Q Consensus 404 ~~~i~~l~~el~~l~~e~~~l~~~~-~~~~~l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g 464 (1209)
......+....+.....+..+.... ..++++..+...|.....++-.++..+.+.|...+|
T Consensus 496 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIG 557 (1201)
T PF12128_consen 496 QAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIG 557 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhH
Confidence 3333344444444444443333322 224555555666666666677777777777877776
No 420
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=125.90 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=76.6
Q ss_pred HHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1087 YKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1087 ~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
..++..++... .+.++.||||+-| |||||-++++++++|++||||++||...+-..++.|+++. ..+
T Consensus 195 devve~l~L~nvl~r~v~~LSGGELQ------r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~-----~~~ 263 (591)
T COG1245 195 DEVVERLGLENVLDRDVSELSGGELQ------RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA-----EDG 263 (591)
T ss_pred HHHHHHhcchhhhhhhhhhcCchHHH------HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHh-----ccC
Confidence 35666666544 3455799999999 9999999999999999999999999999999999999993 347
Q ss_pred cEEEEEecCHHHHHHhhhHhhhh
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAE 1187 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~ 1187 (1209)
..||||-||+..++.++|.+.+.
T Consensus 264 k~ViVVEHDLavLD~lsD~vhI~ 286 (591)
T COG1245 264 KYVIVVEHDLAVLDYLSDFVHIL 286 (591)
T ss_pred CeEEEEechHHHHHHhhheeEEE
Confidence 89999999999999877766544
No 421
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=7.9e-11 Score=146.19 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=77.6
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhcc---CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCL---NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~---~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.....|||||+| |++||++|+. +|++|||||||+|||+.++..|.++|..+. ..|.+||||||++.
T Consensus 824 ~~~~tLSgGe~Q------Rl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~-----~~G~TVIvi~H~~~ 892 (924)
T TIGR00630 824 QPATTLSGGEAQ------RIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLV-----DQGNTVVVIEHNLD 892 (924)
T ss_pred CccccCCHHHHH------HHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHH
Confidence 345789999999 9999999997 599999999999999999999999999883 35789999999999
Q ss_pred HHHHhhhHhhhh------cCcEEeecCCcc
Q 000957 1176 FAQLIGQRQHAE------KYYRVAKDDHQH 1199 (1209)
Q Consensus 1176 ~~~~~~~~~~~~------~~~~v~~~~~~~ 1199 (1209)
++. .||+++.+ .-|+|+..|++.
T Consensus 893 ~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 893 VIK-TADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred HHH-hCCEEEEecCCccCCCCEEEEeCCHH
Confidence 985 68888887 678888877654
No 422
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.15 E-value=4.6e-11 Score=124.77 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=64.2
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC-cEEEEEecCHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN-FQLIVITHDERFAQ 1178 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~-~~~i~itH~~~~~~ 1178 (1209)
.++.|||||++++.+ +.+|+++++.+|++++|||||++||+.+...+.+.|..+. ...| .++|+|||++..+.
T Consensus 123 ~~~~LS~G~~q~~~i--~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~----~~~g~~~viiith~~~~~~ 196 (213)
T cd03277 123 DPHHQSGGERSVSTM--LYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETA----CKEGTSQYFLITPKLLPGL 196 (213)
T ss_pred chhhccccHHHHHHH--HHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHh----hcCCCceEEEEchhhccCC
Confidence 457899999996544 6666777789999999999999999999999999998872 2224 58999999987777
Q ss_pred HhhhHh
Q 000957 1179 LIGQRQ 1184 (1209)
Q Consensus 1179 ~~~~~~ 1184 (1209)
..|+++
T Consensus 197 ~~~~~~ 202 (213)
T cd03277 197 NYHEKM 202 (213)
T ss_pred cccCce
Confidence 665544
No 423
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.13 E-value=7.8e-11 Score=152.70 Aligned_cols=102 Identities=20% Similarity=0.192 Sum_probs=85.6
Q ss_pred HHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhc---cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1089 VLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFC---LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1089 ~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~---~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
++..+|... ...+..|||||+| |++||++|+ .+|++|||||||+|||+.++..|.++|..+ ..
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~Q------RV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L-----~~ 860 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQ------RLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL-----TH 860 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHH------HHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----Hh
Confidence 444556543 2355789999999 999999997 699999999999999999999999999988 34
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhc------CcEEeecCCccccc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEK------YYRVAKDDHQHSII 1202 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~------~~~v~~~~~~~s~~ 1202 (1209)
.|.+||+|||+++++ .+||+++.+. .|+|...|++..++
T Consensus 861 ~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 861 QGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred cCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 588999999999999 7899988885 67888888776554
No 424
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.13 E-value=7.8e-11 Score=157.27 Aligned_cols=135 Identities=17% Similarity=0.073 Sum_probs=98.0
Q ss_pred HHhhhcccc--cCCcchhhhhhccCCccccchhH------HHHHHHHcCCcc----ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1054 IIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSY------SYKVLMQTGDAE----LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1054 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+++++|.+ |+++..++|.+...... ..... ....+..++... ......||||||| |++||
T Consensus 488 ~iayv~Q~~~l~~~Ti~eNI~~g~~~~~-~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkq------Ri~lA 560 (1490)
T TIGR01271 488 RISFSPQTSWIMPGTIKDNIIFGLSYDE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRA------RISLA 560 (1490)
T ss_pred EEEEEeCCCccCCccHHHHHHhccccch-HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHH------HHHHH
Confidence 477888886 57888998876432111 00000 111111221111 1234689999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHH-HHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAA-LHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~-l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
||++.+|++|+|||||++||+.+...+.+. |..+. .|.|+|+|||++.++.. ||+++++..|+|...|+...
T Consensus 561 RAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~------~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 561 RAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM------SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh------cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999874 55541 47899999999999875 99999999999988886555
Q ss_pred cc
Q 000957 1201 II 1202 (1209)
Q Consensus 1201 ~~ 1202 (1209)
+.
T Consensus 634 l~ 635 (1490)
T TIGR01271 634 LQ 635 (1490)
T ss_pred HH
Confidence 43
No 425
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.13 E-value=4.6e-11 Score=160.02 Aligned_cols=138 Identities=17% Similarity=0.091 Sum_probs=99.0
Q ss_pred HHhhhcccc--cCCcchhhhhhccCCccccchhHHHHH------HHHcC--Cc-c-ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1054 IIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKV------LMQTG--DA-E-LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1054 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~-~-~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+++++|.+ ++++..++|.+...... .....+... +...+ +. . ......||||||| |++||
T Consensus 700 ~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkq------RiaLA 772 (1522)
T TIGR00957 700 SVAYVPQQAWIQNDSLRENILFGKALNE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ------RVSLA 772 (1522)
T ss_pred EEEEEcCCccccCCcHHHHhhcCCccCH-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHH------HHHHH
Confidence 477888876 57888898876432211 111111111 11111 11 1 1334679999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
||++.+|++|+|||||++||+.+...+.+.+..... ...|.|+|+|||+..++.. ||+++.+..|+|...|+...+
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~---~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG---VLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh---hhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHH
Confidence 999999999999999999999999999888764210 1246899999999999976 999999999999988865444
Q ss_pred c
Q 000957 1202 I 1202 (1209)
Q Consensus 1202 ~ 1202 (1209)
.
T Consensus 849 ~ 849 (1522)
T TIGR00957 849 L 849 (1522)
T ss_pred H
Confidence 3
No 426
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3e-11 Score=128.71 Aligned_cols=69 Identities=39% Similarity=0.449 Sum_probs=61.8
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
+..||||||. |+|||..-|..|++|||||||++||...+..|+++|.++ +..|||||||..++...
T Consensus 702 ikdLSGGQKa------RValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney--------~GgVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 702 IKDLSGGQKA------RVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY--------NGGVIMVSHDERLIVET 767 (807)
T ss_pred eeecCCcchH------HHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc--------cCcEEEEecccceeeec
Confidence 3579999999 999999999999999999999999999999999999987 34799999999998755
Q ss_pred hhH
Q 000957 1181 GQR 1183 (1209)
Q Consensus 1181 ~~~ 1183 (1209)
.|.
T Consensus 768 ~C~ 770 (807)
T KOG0066|consen 768 DCN 770 (807)
T ss_pred Cce
Confidence 443
No 427
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.12 E-value=8.4e-11 Score=152.42 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=77.9
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
.++.|||||+| |++||++|+.+| .+|||||||+|||+..+..|.++|..+ ...|.||||||||++++
T Consensus 473 ~~~tLSGGE~Q------RV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L-----~~~G~TVIvVeHd~~vi 541 (1809)
T PRK00635 473 ALATLSGGEQE------RTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKL-----RDQGNTVLLVEHDEQMI 541 (1809)
T ss_pred chhhCCHHHHH------HHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHH-----HhCCCEEEEEeCcHHHH
Confidence 44689999999 999999999999 899999999999999999999999998 33588999999999954
Q ss_pred HHhhhHhhhhc------CcEEeecCCcccc
Q 000957 1178 QLIGQRQHAEK------YYRVAKDDHQHSI 1201 (1209)
Q Consensus 1178 ~~~~~~~~~~~------~~~v~~~~~~~s~ 1201 (1209)
.+||+++.+. -|+|+..|+...+
T Consensus 542 -~~aDrVi~L~pGag~~gG~Iv~~G~~~ei 570 (1809)
T PRK00635 542 -SLADRIIDIGPGAGIFGGEVLFNGSPREF 570 (1809)
T ss_pred -HhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence 7899988874 5688877765443
No 428
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=8.9e-11 Score=118.46 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=86.1
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
.++...|.||+. |||++-+...+|++|+|||..+..|+.=.+.-...+.+++ ..+.++|+||||+.++.
T Consensus 143 ~PvktYSSGM~a------RLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~-----~~~~tiv~VSHd~~~I~ 211 (249)
T COG1134 143 QPVKTYSSGMYA------RLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV-----EKNKTIVLVSHDLGAIK 211 (249)
T ss_pred CchhhccHHHHH------HHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHH-----HcCCEEEEEECCHHHHH
Confidence 345789999999 9999999999999999999999999999998888888873 35689999999999999
Q ss_pred HhhhHhhhhcCcEEeecCCcccccc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.+||+++..+.|.|...|++.+++.
T Consensus 212 ~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 212 QYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999999999999999888775
No 429
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.11 E-value=6.7e-11 Score=156.39 Aligned_cols=103 Identities=16% Similarity=0.036 Sum_probs=87.8
Q ss_pred HHHHcCCccc-------cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1089 VLMQTGDAEL-------EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1089 ~~~~~~~~~~-------~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
++..+|..+. .+++.||||||+ |++||++|+.+|++++|||||+|||+.+...+.+.|+.+. .
T Consensus 188 ~l~~lgL~~~~~t~vg~~~~~~LSGGerk------RvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la----~ 257 (1394)
T TIGR00956 188 YMATYGLSHTRNTKVGNDFVRGVSGGERK------RVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSA----N 257 (1394)
T ss_pred HHHHcCcccccCceeCCCcCCCCCcccch------HHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH----H
Confidence 4555665442 234679999999 9999999999999999999999999999999999999983 2
Q ss_pred CCCcEEEEEecCH-HHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1162 QENFQLIVITHDE-RFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1162 ~~~~~~i~itH~~-~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
..|.++|+++|++ ..+..++|++++++.|++...|+...+
T Consensus 258 ~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 258 ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred hcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 3478999999996 788899999999999999999876544
No 430
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=1.8e-10 Score=126.41 Aligned_cols=83 Identities=27% Similarity=0.327 Sum_probs=67.0
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCL----NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~----~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
..|||||++ |++||++++. +|++++|||||++||+.+...+.+.|..+. .+.|+|+|||++.++
T Consensus 169 ~~lS~G~~~------r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~------~~~tii~isH~~~~~ 236 (276)
T cd03241 169 KIASGGELS------RLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS------RSHQVLCITHLPQVA 236 (276)
T ss_pred hhcChhHHH------HHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh------CCCEEEEEechHHHH
Confidence 469999999 8888875433 999999999999999999999999998872 367999999999976
Q ss_pred HHhhhHhhhhcCcEEeecCCccccc
Q 000957 1178 QLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1178 ~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
. .+++.+.+...+.+.|..
T Consensus 237 ~------~~d~~~~l~~~~~~~~~~ 255 (276)
T cd03241 237 A------MADNHFLVEKEVEGGRTV 255 (276)
T ss_pred H------hcCcEEEEEEecCCCeEE
Confidence 4 566666776666554544
No 431
>PTZ00243 ABC transporter; Provisional
Probab=99.11 E-value=1e-10 Score=156.10 Aligned_cols=138 Identities=21% Similarity=0.132 Sum_probs=97.0
Q ss_pred HHHhhhcccc--cCCcchhhhhhccCCccccch-----hHHHHHHHHc--CCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1053 KIIRELWQQT--YRGQDIDYIRIHSDSEGAGTR-----SYSYKVLMQT--GDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
..+++++|.+ |+++..++|.+.......... ......+..+ |+.. ......||||||| |++||
T Consensus 721 ~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkq------RvaLA 794 (1560)
T PTZ00243 721 RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKA------RVSLA 794 (1560)
T ss_pred CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHH------HHHHH
Confidence 4577888875 578888888764321110000 0011112222 2211 2344689999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
|||+.+|++|+|||||++||+.+...+...+... ...|.|+|+|||+..++. .||+++.+..|+|...|+...+
T Consensus 795 RAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~-----~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 795 RAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-----ALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-----hhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999888776643221 114789999999999995 6999999999999988865554
Q ss_pred c
Q 000957 1202 I 1202 (1209)
Q Consensus 1202 ~ 1202 (1209)
.
T Consensus 869 ~ 869 (1560)
T PTZ00243 869 M 869 (1560)
T ss_pred H
Confidence 3
No 432
>PLN03140 ABC transporter G family member; Provisional
Probab=99.09 E-value=9.1e-11 Score=154.32 Aligned_cols=105 Identities=18% Similarity=0.099 Sum_probs=88.8
Q ss_pred HHHHHcCCcc-------ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1088 KVLMQTGDAE-------LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1088 ~~~~~~~~~~-------~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
.++..+|... ..++..||||||+ |++||++++.+|++++|||||+|||+.+...+.+.|+.+.
T Consensus 314 ~~L~~lGL~~~~~t~vg~~~~rglSGGerk------RVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la---- 383 (1470)
T PLN03140 314 YTLKILGLDICKDTIVGDEMIRGISGGQKK------RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV---- 383 (1470)
T ss_pred HHHHHcCCccccCceeCCccccCCCcccce------eeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHH----
Confidence 3555566543 2355789999999 9999999999999999999999999999999999999983
Q ss_pred cCCCcEEEEEecCH-HHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1161 GQENFQLIVITHDE-RFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~-~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
...|.|+|+++|++ ..+..++|+++.+..|+|...|+...++
T Consensus 384 ~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 384 HLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred HhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHH
Confidence 23578999999986 5778899999999999999999765543
No 433
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.3e-10 Score=131.67 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=82.9
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..++.||||-+| ++.||+.|+.+|++|||||||.|.|.-+...+..+|+++ ...|.+|||||-++..+.
T Consensus 397 ~~v~~LSGGNQQ------KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l-----A~~G~ail~iSSElpEll 465 (500)
T COG1129 397 QPIGTLSGGNQQ------KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL-----AAEGKAILMISSELPELL 465 (500)
T ss_pred chhhcCCchhhh------hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH-----HHCCCEEEEEeCChHHHH
Confidence 456899999999 999999999999999999999999999999999999999 457999999999999999
Q ss_pred HhhhHhhhhcCcEEeecCCc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
.+||++++++.|+|+..-++
T Consensus 466 ~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 466 GLSDRILVMREGRIVGELDR 485 (500)
T ss_pred hhCCEEEEEECCEEEEEecc
Confidence 99999999999999885433
No 434
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.06 E-value=1.9e-10 Score=124.28 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=69.2
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
.+..|||||.| |+|||.+|+.++++++||||.++||.+.+-.++..|+.++. +.+.+.+||-||.-++..
T Consensus 452 ~v~~LSGGELQ------RvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e----~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 452 PVDELSGGELQ------RVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIE----NNEKTALVVDHDIYMIDY 521 (591)
T ss_pred ccccCCchhHH------HHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHh----hcCceEEEEecceehhhh
Confidence 44789999999 99999999999999999999999999999999999999974 356799999999999998
Q ss_pred hhhHhh
Q 000957 1180 IGQRQH 1185 (1209)
Q Consensus 1180 ~~~~~~ 1185 (1209)
++|+++
T Consensus 522 vsDr~i 527 (591)
T COG1245 522 VSDRLI 527 (591)
T ss_pred hhceEE
Confidence 877754
No 435
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.05 E-value=5.6e-07 Score=103.22 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhh
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIG 1181 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~ 1181 (1209)
...||||-.+++|+|.++++... +.|.||+||+++|+--.....++..|+.+ +.+.|||+|||-+.++.
T Consensus 430 KvASGGELSRimLAlk~i~~~~~--~~ptlIFDEVD~GIsG~~A~aVg~~L~~L------s~~~QVl~VTHlPQVAa--- 498 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKD--DTPTLIFDEVDTGISGRVAQAVGKKLRRL------SEHHQVLCVTHLPQVAA--- 498 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccC--CCCeEEEecccCCCChHHHHHHHHHHHHH------hcCceEEEEecHHHHHh---
Confidence 46899999988888888887763 56799999999999999999999999998 46789999999999998
Q ss_pred hHhhhhcCcEEeecCCccc
Q 000957 1182 QRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1182 ~~~~~~~~~~v~~~~~~~s 1200 (1209)
.+++.|.|.+.+.+.+
T Consensus 499 ---~ad~H~~V~K~~~~~~ 514 (557)
T COG0497 499 ---MADTHFLVEKESEDGR 514 (557)
T ss_pred ---hhcceEEEEEecCCCc
Confidence 8999999999875433
No 436
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.05 E-value=0.0002 Score=87.08 Aligned_cols=37 Identities=24% Similarity=0.535 Sum_probs=15.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000957 487 EFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDV 523 (1209)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l 523 (1209)
++....+.++.....+..+..++..+...+......+
T Consensus 379 Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql 415 (775)
T PF10174_consen 379 EIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQL 415 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333333
No 437
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.05 E-value=4.8e-10 Score=135.45 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=110.2
Q ss_pred HHHHHHHHhhhccccc---CCcchhhhhhccCCc------cccchhHHHHHHHHcCCcc--ccccC-----CCChhhhhh
Q 000957 1048 MEEINKIIRELWQQTY---RGQDIDYIRIHSDSE------GAGTRSYSYKVLMQTGDAE--LEMRG-----RCSAGQKVL 1111 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~-----~lSgG~k~l 1111 (1209)
.....++.+++.|.-. .-|+.+++.+.+... ...++..+..++...|+.. ...+| .+|||||.
T Consensus 99 ~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErk- 177 (613)
T KOG0061|consen 99 SRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERK- 177 (613)
T ss_pred hhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhh-
Confidence 3456677777777652 235677776654433 1234456667777777653 22233 59999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH-HHHHhhhHhhhhcCc
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER-FAQLIGQRQHAEKYY 1190 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~-~~~~~~~~~~~~~~~ 1190 (1209)
|++||.-+..+|++|+|||||+|||..+...+...|+++ +..|.+||++-|-+. -+-.+-|+++++..|
T Consensus 178 -----Rvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l-----A~~grtVi~tIHQPss~lf~lFD~l~lLs~G 247 (613)
T KOG0061|consen 178 -----RVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL-----ARSGRTVICTIHQPSSELFELFDKLLLLSEG 247 (613)
T ss_pred -----HHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH-----HhCCCEEEEEEeCCcHHHHHHHhHhhhhcCC
Confidence 999999999999999999999999999999999999999 345999999999864 444567888999999
Q ss_pred EEeecCCccccc
Q 000957 1191 RVAKDDHQHSII 1202 (1209)
Q Consensus 1191 ~v~~~~~~~s~~ 1202 (1209)
+++..|++.+.+
T Consensus 248 ~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 248 EVVYSGSPRELL 259 (613)
T ss_pred cEEEecCHHHHH
Confidence 999999876543
No 438
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.01 E-value=9e-10 Score=110.35 Aligned_cols=76 Identities=33% Similarity=0.352 Sum_probs=64.1
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCL----NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~----~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
..|||||++ |++|+++|.. +|++++||||++|+|+.....+...|.++. .. |.++|++||+.+++
T Consensus 76 ~~lS~G~~~------~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~----~~-~~~vii~TH~~~~~ 144 (162)
T cd03227 76 LQLSGGEKE------LSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL----VK-GAQVIVITHLPELA 144 (162)
T ss_pred eeccccHHH------HHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----hc-CCEEEEEcCCHHHH
Confidence 479999999 8888888765 789999999999999999999999998873 22 78999999999998
Q ss_pred HHhhhHhhhhcCcEEee
Q 000957 1178 QLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1178 ~~~~~~~~~~~~~~v~~ 1194 (1209)
. .+++.+.+.+
T Consensus 145 ~------~~d~~~~l~~ 155 (162)
T cd03227 145 E------LADKLIHIKK 155 (162)
T ss_pred H------hhhhEEEEEE
Confidence 7 4566555544
No 439
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.00 E-value=5.5e-10 Score=107.81 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=94.6
Q ss_pred hHHHHHHHHcCCccc-----cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHh
Q 000957 1084 SYSYKVLMQTGDAEL-----EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMED 1158 (1209)
Q Consensus 1084 ~~~~~~~~~~~~~~~-----~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~ 1158 (1209)
.++..++..+|..+. .++..|.-|+=| .+.||.|++..|.+||.||||+++||.+...+.++|..+
T Consensus 134 rrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~Q------KVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~m--- 204 (330)
T COG4170 134 RRAIELLHRVGIKDHKDIMRSYPYELTEGECQ------KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRL--- 204 (330)
T ss_pred HHHHHHHHHhccccHHHHHHhCcchhccCcce------eeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHh---
Confidence 356667777876652 356789999999 888888999999999999999999999999999999988
Q ss_pred hccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1159 RKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1159 ~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
....|+++++||||...+..+||++.++++|.-+..++...++..
T Consensus 205 -NQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~ 249 (330)
T COG4170 205 -NQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249 (330)
T ss_pred -hccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcC
Confidence 466799999999999999999999999999998887765555543
No 440
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.99 E-value=9.4e-11 Score=146.51 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 82 ALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRE 119 (1209)
Q Consensus 82 ale~lk~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~ 119 (1209)
..-.+-+..+++..+|..+..+++.=+..+.++.+-+.
T Consensus 33 ~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~ 70 (859)
T PF01576_consen 33 LRAQLQKKIKELQARIEELEEELESERQARAKAEKQRR 70 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666777777777666666655555443
No 441
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=0.00051 Score=82.87 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=45.5
Q ss_pred cccccchhhhhhhhhcCCHHhh-----hhhe--eeccCCCCCCCCCchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000957 24 SYRCADMDREVPALMGVSKAIL-----ENVI--FVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQE 96 (1209)
Q Consensus 24 s~k~~~~d~~~~~~lgvs~ail-----~~Vi--fchQees~wpl~ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~ 96 (1209)
|.|..=||. |.--|||-.+=| ...| +|-+....-....|---...|--+++...|.-.+|+--..+.++...
T Consensus 36 SGKSNlMDA-ISFVLGekss~LR~~~lkdLIyg~~i~~~v~l~Y~~~dg~~~~F~R~I~~G~seY~IDne~VT~eeY~~e 114 (1141)
T KOG0018|consen 36 SGKSNLMDA-ISFVLGEKSSHLRVSHLKDLIYGKPIRKPVTLKYEEGDGETRRFTRAINGGTSEYMIDNEIVTREEYLEE 114 (1141)
T ss_pred CchHHHHHH-HHHHhcCCCcccccchHHHHhcCCccCCchhheeecCCchhhhhhhhhcCCceeEEEcceeccHHHHHHH
Confidence 455455554 555577765433 3333 34444443333344445567877666777777777777777777777
Q ss_pred HHHHHH
Q 000957 97 IKTYKL 102 (1209)
Q Consensus 97 lK~~~~ 102 (1209)
+..+..
T Consensus 115 LekinI 120 (1141)
T KOG0018|consen 115 LEKINI 120 (1141)
T ss_pred Hhhcce
Confidence 755543
No 442
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.93 E-value=1.6e-10 Score=144.54 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=0.0
Q ss_pred CchhhHHhhHHhhhhhh
Q 000957 62 DPSTLKKKFDDIFSATR 78 (1209)
Q Consensus 62 ep~~Lkk~fDdIf~a~k 78 (1209)
|-..|+..|++.-|++.
T Consensus 75 ELe~l~~~Lee~~~~t~ 91 (859)
T PF01576_consen 75 ELEELKERLEEAGGATQ 91 (859)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHhhCcHH
Confidence 44556666666666543
No 443
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=1e-09 Score=138.56 Aligned_cols=137 Identities=20% Similarity=0.208 Sum_probs=100.6
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHc---------CCcc---c-cccCCCChhhhhhhhH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQT---------GDAE---L-EMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~-~~~~~lSgG~k~l~sl 1114 (1209)
.++..++|+.|.+ ++||..++|.+....+ ..+. ..|+... +..+ . +..-.|||||||
T Consensus 579 ~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d-~~rY---~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKq---- 650 (1381)
T KOG0054|consen 579 AVNGSVAYVPQQPWIQNGTVRENILFGSPYD-EERY---DKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQ---- 650 (1381)
T ss_pred EEcCeEEEeccccHhhCCcHHHhhhcCcccc-HHHH---HHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHH----
Confidence 4556678888887 6899999997754332 1111 1233321 1111 1 222479999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++||||+++++++|+||-|.+++|...-..+.+-.-. . .-.+.|+|+|||...|+. -||.++++..|+|..
T Consensus 651 --RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~---~--~L~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 651 --RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR---G--LLRGKTVILVTHQLQFLP-HADQIIVLKDGKIVE 722 (1381)
T ss_pred --HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH---h--hhcCCEEEEEeCchhhhh-hCCEEEEecCCeEec
Confidence 99999999999999999999999999888766654331 1 235789999999988886 579999999999999
Q ss_pred cCCccccc
Q 000957 1195 DDHQHSII 1202 (1209)
Q Consensus 1195 ~~~~~s~~ 1202 (1209)
.|+..+..
T Consensus 723 ~Gty~el~ 730 (1381)
T KOG0054|consen 723 SGTYEELL 730 (1381)
T ss_pred ccCHHHHH
Confidence 99766654
No 444
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.88 E-value=2.9e-06 Score=104.52 Aligned_cols=135 Identities=16% Similarity=0.261 Sum_probs=96.1
Q ss_pred CccccccccccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCC-CchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000957 18 GEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQ-DPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQE 96 (1209)
Q Consensus 18 g~~~~~s~k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~-ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~ 96 (1209)
|.....+....|+...|..++|+++..+.++|+.+|+++.=++. .|+..++.|++|||...|.++-..++...++....
T Consensus 103 ~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~ 182 (562)
T PHA02562 103 GKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPFMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQ 182 (562)
T ss_pred CEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhHhcCChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 54433334567899999999999999999999999999874433 68999999999999999999988889888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000957 97 IKTYKLKLENLQTLKDAAYKLRE--------SISQDQEKTEALKNQMQELEKSIQDIDDKIHHT 152 (1209)
Q Consensus 97 lK~~~~~l~~lk~~ke~a~~~~~--------~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l 152 (1209)
+..+..++..+....+....... .+..++..++.+..+...+..++..+...+..+
T Consensus 183 i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 183 IQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888666554332222 233344444444444444444444444444433
No 445
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.87 E-value=2.8e-09 Score=100.16 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=85.0
Q ss_pred CccccccCCCChhhhhhhhHHHHHHHHHHhcc-----CC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEE
Q 000957 1095 DAELEMRGRCSAGQKVLASLIIRLALAETFCL-----NC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQL 1167 (1209)
Q Consensus 1095 ~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~-----~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~ 1167 (1209)
+.-.++..+|||||=| |+-||-.+.+ || .+|+||||.++||......+-++|..+ ...|.+|
T Consensus 117 DKL~Rs~~qLSGGEWQ------RVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~-----c~~G~~v 185 (248)
T COG4138 117 DKLGRSTNQLSGGEWQ------RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL-----CQQGLAI 185 (248)
T ss_pred chhhhhhhhcCcccce------eeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHH-----HhCCcEE
Confidence 3335677899999999 8888766542 34 799999999999999999999999988 3579999
Q ss_pred EEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccccc
Q 000957 1168 IVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1168 i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~ 1205 (1209)
|+.+||.+---+-++.++....|.+...|....+....
T Consensus 186 ims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~ 223 (248)
T COG4138 186 VMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223 (248)
T ss_pred EEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChH
Confidence 99999999999999999999999999999877776543
No 446
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.1e-09 Score=114.79 Aligned_cols=91 Identities=25% Similarity=0.341 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCc-ccc--ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGDA-ELE--MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~~-~~~--~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
++.+++.-.|-. ++. +...+|||-++ |+.|||||+..|-+|.|||||++||...+--|-++|..+
T Consensus 391 rARRILAGLGFskEMQ~rPt~kFSGGWRM------RvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------ 458 (807)
T KOG0066|consen 391 RARRILAGLGFSKEMQERPTTKFSGGWRM------RVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------ 458 (807)
T ss_pred HHHHHHhhcCCChhHhcCCccccCCceee------ehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------
Confidence 344566655532 222 22569999999 999999999999999999999999999888777777655
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcC
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKY 1189 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~ 1189 (1209)
..|++|||||..|+..+|+.++-...
T Consensus 459 --kKTLLIVSHDQgFLD~VCtdIIHLD~ 484 (807)
T KOG0066|consen 459 --KKTLLIVSHDQGFLDSVCTDIIHLDN 484 (807)
T ss_pred --hheeEEEecccchHHHHHHHHhhhhh
Confidence 36999999999999999988765433
No 447
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.83 E-value=6e-09 Score=91.72 Aligned_cols=56 Identities=32% Similarity=0.352 Sum_probs=49.1
Q ss_pred cccCCCChhhh-hhhhHHHHHHHHHHhccC------CCeEEEeCCCCCCCHHhHHHHHHHHHH
Q 000957 1099 EMRGRCSAGQK-VLASLIIRLALAETFCLN------CGILALDEPTTNLDGPNAESLAAALHR 1154 (1209)
Q Consensus 1099 ~~~~~lSgG~k-~l~sl~ir~~la~~~~~~------~~~l~lDEp~~~LD~~~~~~~~~~l~~ 1154 (1209)
.+.+.+||||+ .+++++|++|++..+... |.+++|||||++||+.++..++.+|++
T Consensus 28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 44578999999 999999999999988763 799999999999999999999998863
No 448
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.83 E-value=0.0011 Score=80.40 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccH--HHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHH
Q 000957 937 KVDKFASEIESLEERVLKIGGVSTF--ETELGKHLLERDRLLSEVNRCQGTMSVYQTNISR 995 (1209)
Q Consensus 937 ~l~~l~~ei~~l~~~~~~~~~~~~~--~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~ 995 (1209)
.+..+..+|..+..++.. ++||.. ..++......++.|..+...+.+....+..-|..
T Consensus 449 ~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 449 MFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778889999999999 887862 2356677777777777777776666666555554
No 449
>PRK00064 recF recombination protein F; Reviewed
Probab=98.83 E-value=5.3e-08 Score=110.75 Aligned_cols=72 Identities=28% Similarity=0.281 Sum_probs=60.0
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHh---ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETF---CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~---~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
++.+|+||+++++|++++|-+..+ +.+||+|+||||+++||+.++..|...|..+ +.|+|++||+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--------~~qv~it~~~~~~~ 342 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--------GAQVFITTTDLEDL 342 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--------CCEEEEEcCChhhh
Confidence 368999999988888877765543 6789999999999999999999988877643 35999999998877
Q ss_pred HHh
Q 000957 1178 QLI 1180 (1209)
Q Consensus 1178 ~~~ 1180 (1209)
..+
T Consensus 343 ~~~ 345 (361)
T PRK00064 343 ADL 345 (361)
T ss_pred hhh
Confidence 654
No 450
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.79 E-value=0.0014 Score=78.81 Aligned_cols=19 Identities=0% Similarity=-0.024 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000957 894 VKSCKIRTDEILVELDRFK 912 (1209)
Q Consensus 894 i~~~~~~i~~l~~~i~~l~ 912 (1209)
+.....++..++.++..+.
T Consensus 1726 L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1726 LEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 3333333333333333333
No 451
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.78 E-value=2.1e-08 Score=116.39 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=68.0
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhh
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIG 1181 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~ 1181 (1209)
..|||||+| |+|+||.+++.|+++||||.|++||+.+...+..+|++- -.+++||-|+|...+-.
T Consensus 514 ~vLS~GEqQ------RlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~------lp~~tvISV~Hr~tl~~--- 578 (604)
T COG4178 514 RVLSGGEQQ------RLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE------LPDATVISVGHRPTLWN--- 578 (604)
T ss_pred hhcChhHHH------HHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh------CCCCEEEEeccchhhHH---
Confidence 479999999 999999999999999999999999999999999998874 26789999999988876
Q ss_pred hHhhhhcCcEEeecCCc
Q 000957 1182 QRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1182 ~~~~~~~~~~v~~~~~~ 1198 (1209)
+......+...+.+
T Consensus 579 ---~h~~~l~l~~~~~~ 592 (604)
T COG4178 579 ---FHSRQLELLDDAGG 592 (604)
T ss_pred ---HHhhheeecccccc
Confidence 55555666666544
No 452
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=1.4e-08 Score=128.54 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=110.6
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCcc-----ccchhHHHHHHHHcCCc---cc-cccCCCChhhhhhhhHH
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEG-----AGTRSYSYKVLMQTGDA---EL-EMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~-~~~~~lSgG~k~l~sl~ 1115 (1209)
....++..++-++|.+ |.||...+++....... +-.......++...++. .. +-...+|-||||
T Consensus 1208 gL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQ----- 1282 (1381)
T KOG0054|consen 1208 GLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQ----- 1282 (1381)
T ss_pred cHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHH-----
Confidence 3568999999999998 79998888754332111 00111222233322211 11 222579999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
.++|||||+.++.||+|||+||+.|+.+=..+-+.|++-+ .++|||.|-|+.+.+.. ||++.++..|+|...
T Consensus 1283 -LlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F------~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1283 -LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF------KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF 1354 (1381)
T ss_pred -HHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh------cCCeEEEEeeccchhhh-cCeEEEeeCCeEeec
Confidence 8888999999999999999999999999999999988874 46899999999999974 799999999999999
Q ss_pred CCccccccc
Q 000957 1196 DHQHSIIEA 1204 (1209)
Q Consensus 1196 ~~~~s~~~~ 1204 (1209)
|+|...+..
T Consensus 1355 dsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1355 DSPAELLSD 1363 (1381)
T ss_pred CChHHHHhC
Confidence 999887754
No 453
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.73 E-value=1.8e-08 Score=105.03 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=67.9
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHH-HHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAA-ALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..+.+|+|+++ ++.+++++ .+|++++|||||++||+.....+.. .+..+ ...|.++|++||+.. +.
T Consensus 88 ~~s~fs~g~~~------~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l-----~~~~~~vi~~tH~~~-l~ 154 (200)
T cd03280 88 SLSTFSSHMKN------IARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEEL-----LERGALVIATTHYGE-LK 154 (200)
T ss_pred CcchHHHHHHH------HHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH-----HhcCCEEEEECCHHH-HH
Confidence 34689999999 77777664 7999999999999999999998864 56655 234789999999855 55
Q ss_pred HhhhHhhhhcCcEEeecC
Q 000957 1179 LIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~ 1196 (1209)
.+|+++.....|.+..++
T Consensus 155 ~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 155 AYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHhcCCCeEEEEEEEec
Confidence 788888888888887774
No 454
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=2.9e-08 Score=108.67 Aligned_cols=71 Identities=24% Similarity=0.164 Sum_probs=55.0
Q ss_pred CCCChhhhhhhhHHHHHHHHH---HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAE---TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~---~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..||+||++.++|++.+|.+. +++.+|++++|||||++||+.++..+...|..+ + |+|++||+...+.
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--------~-q~ii~~~~~~~~~ 252 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--------V-QTFVTTTDLADFD 252 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--------C-CEEEEeCCchhcc
Confidence 368999999666665554333 245799999999999999999999988888754 1 6788888777776
Q ss_pred Hhh
Q 000957 1179 LIG 1181 (1209)
Q Consensus 1179 ~~~ 1181 (1209)
.+|
T Consensus 253 ~~~ 255 (270)
T cd03242 253 ALW 255 (270)
T ss_pred chh
Confidence 654
No 455
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.66 E-value=4.9e-08 Score=108.29 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=89.3
Q ss_pred HHHHHHHHcCC---ccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1085 YSYKVLMQTGD---AELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1085 ~~~~~~~~~~~---~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
+..+++..++. .+..+...||||..| ++.+||-|..+|++||+-.||.|||...+..+.+.|.+. .
T Consensus 382 ~a~~li~~fdVr~~~~~~~a~~LSGGNqQ------K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~-----r 450 (501)
T COG3845 382 FARELIEEFDVRAPSPDAPARSLSGGNQQ------KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL-----R 450 (501)
T ss_pred HHHHHHHHcCccCCCCCcchhhcCCccee------hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH-----H
Confidence 34455555432 234455789999999 999999999999999999999999999999999999887 5
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
..|+.|++||-|++.+..+||++.+++.|+|+-..++.
T Consensus 451 ~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 451 DAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred hcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 67999999999999999999999999999998876544
No 456
>PF13166 AAA_13: AAA domain
Probab=98.65 E-value=1.9e-05 Score=100.19 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCChhhhhhhhHHHHHHHHH--Hh-ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAE--TF-CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~--~~-~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..||-|||..+|++.=|+-.. .- +..+.++|+|-|-+.||..++..++.+|...+ ......||||-|||..|+.
T Consensus 499 ~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~---~~~~~~QviIlTHn~~F~~ 575 (712)
T PF13166_consen 499 KILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEI---KNSKFRQVIILTHNLYFFK 575 (712)
T ss_pred CccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHh---hcCCcceEEEEeCcHHHHH
Confidence 579999999777644444333 00 12678999999999999999999999999986 1245679999999999999
Q ss_pred HhhhHhh------hhcCcEEeecCCccccc
Q 000957 1179 LIGQRQH------AEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1179 ~~~~~~~------~~~~~~v~~~~~~~s~~ 1202 (1209)
.+..... ...+|.+.+.+. .|.|
T Consensus 576 ~l~~~~~~~~~~~~~~~~~l~~~~~-~s~i 604 (712)
T PF13166_consen 576 ELKKWFEEKRKSKKANFYRLEKKGN-ISSI 604 (712)
T ss_pred HHHHHhhhhccccCCeEEEEEecCC-ccch
Confidence 8875543 355666767553 4444
No 457
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.62 E-value=0.0046 Score=75.68 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=26.1
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 190 EIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKF 232 (1209)
Q Consensus 190 ~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1209)
.+..+.....+.+.++.+.+...+..+..+++++.+.+..+..
T Consensus 211 qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~ 253 (1074)
T KOG0250|consen 211 QITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDN 253 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666666666666666655555543
No 458
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=4.8e-07 Score=102.56 Aligned_cols=69 Identities=28% Similarity=0.279 Sum_probs=57.4
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhc---cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFC---LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~---~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..||+||+++++|++.+|-+..+. ..||+|+||||+++||+.++..|.+.|... |.|+||+||++..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--------~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--------GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--------CCEEEEEecChhhcc
Confidence 579999999777777777665543 379999999999999999999998877642 579999999998765
No 459
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.57 E-value=6.1e-08 Score=113.05 Aligned_cols=92 Identities=22% Similarity=0.300 Sum_probs=74.1
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNC---GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~---~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
+...|||||-| |+-||.-|.... -+||||||||||=+.-+..|...|..++ ..|-|||||-|+++.
T Consensus 819 patTLSGGEaQ------RvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLv-----d~GnTViVIEHNLdV 887 (935)
T COG0178 819 PATTLSGGEAQ------RVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLV-----DKGNTVIVIEHNLDV 887 (935)
T ss_pred ccccccchHHH------HHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHH-----hCCCEEEEEecccce
Confidence 44689999999 999999888665 8999999999999999999999999994 468899999999999
Q ss_pred HHHhhhHh------hhhcCcEEeecCCcccccc
Q 000957 1177 AQLIGQRQ------HAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1177 ~~~~~~~~------~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+. .||.+ .-+.-|.|+..|+|..++.
T Consensus 888 Ik-~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 888 IK-TADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred Ee-ecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 87 22221 1223367788887776654
No 460
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.49 E-value=0.0091 Score=72.18 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHH
Q 000957 751 NELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLL 830 (1209)
Q Consensus 751 ~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~ 830 (1209)
.+|..+..+|......+.++..-++..+..+...++.+.+.....+....++...+.....+++.+.....++.-|+.+.
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45555555555555555555555555555555555554444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000957 831 SDYNDLKVKLNREYEEQAEQ 850 (1209)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~ 850 (1209)
..+..+...+.+..++....
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~a 1610 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAA 1610 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333333
No 461
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.47 E-value=3.9e-07 Score=102.54 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=71.1
Q ss_pred HHHHcCCcc----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1089 VLMQTGDAE----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1089 ~~~~~~~~~----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
++.+.|+.+ +++...|||||+| |+|+||.|++.|.+.||||-|+++|...-..+.+.+++ .|
T Consensus 552 l~~r~ggld~~~~~dW~dvLS~GEqQ------RLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--------~g 617 (659)
T KOG0060|consen 552 LLEREGGLDQQVDWDWMDVLSPGEQQ------RLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--------MG 617 (659)
T ss_pred HHHHhCCCCchhhccHHhhcCHHHHH------HHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--------cC
Confidence 344455433 4566789999999 99999999999999999999999999888887776665 48
Q ss_pred cEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
.|+|-|+|...+.. -|.+.+..+|.|.
T Consensus 618 iT~iSVgHRkSL~k--------fHd~~L~~~g~g~ 644 (659)
T KOG0060|consen 618 ITFISVGHRKSLWK--------FHDYVLRMDGRGS 644 (659)
T ss_pred CeEEEeccHHHHHh--------hhhEEEEecCCCc
Confidence 99999999998864 4556666666553
No 462
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.011 Score=70.23 Aligned_cols=197 Identities=17% Similarity=0.162 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000957 963 TELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMR 1042 (1209)
Q Consensus 963 ~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~ 1042 (1209)
.+...+..-...+..+...+..++..+..+|.++..- ....++..+|....-+++.+-..-..+.-...++++++..
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g---~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~ 850 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGG---GTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRL 850 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555566665555555432 4677777888888777776655555566667778888877
Q ss_pred HhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCccccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1043 FHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1043 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+-......+-..-+.+|.++-. +.|..|-+..+... . .|+...+.. ..+..||-|-+-..=++||||++.
T Consensus 851 ~ke~rlP~vi~~A~~~F~hlT~-G~Yt~Iy~~e~~d~--I------~V~~~~G~~-~~~~ELSqgT~EQLYlAlRfali~ 920 (984)
T COG4717 851 FKERRLPAVIQEASEFFMHLTD-GRYTGIYTQEDKDS--I------IVEHRAGGS-KLAEELSQGTKEQLYLALRFALIH 920 (984)
T ss_pred HHhhhchHHHHHHHHHHhhccC-CceeeeecccCCce--e------EEEeccccc-ccHHHHhhhHHHHHHHHHHHHHHh
Confidence 7776666666666666665432 23333322111110 0 011111111 112379999999999999999999
Q ss_pred HhccC-CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1123 TFCLN-CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1123 ~~~~~-~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
.+-.. |=.+|+|-.+.+.|+....+.+++|.++ ..|.|||.-||..+..+
T Consensus 921 ~~~~~~~LP~i~DD~fVhFD~~R~~r~~e~l~dl------s~~~QviYFTCHe~~~d 971 (984)
T COG4717 921 EVRTREPLPFIADDIFVHFDDERAKRMLELLADL------SEGNQVIYFTCHEHTCD 971 (984)
T ss_pred hhccCCCCCeeeccchhccCHHHHHHHHHHHHHh------ccCCeEEEEEechhhhc
Confidence 98433 5668899999999999999999999998 45889999999998865
No 463
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.42 E-value=4.1e-07 Score=95.77 Aligned_cols=82 Identities=18% Similarity=0.069 Sum_probs=63.8
Q ss_pred CCCChhhhhhhhHHHHHHHHHHh--ccCCCeEEEeCC---CCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETF--CLNCGILALDEP---TTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~--~~~~~~l~lDEp---~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
..+|+|++. ++.++.++ +.+|++++|||| |++||+..... ..+..+. ...|.++|++||+ ..
T Consensus 88 ~~lS~~~~e------~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~----~~~~~~vlisTH~-~e 154 (222)
T cd03285 88 KGVSTFMAE------MLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIA----TQIKCFCLFATHF-HE 154 (222)
T ss_pred cCcChHHHH------HHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHH----hcCCCeEEEEech-HH
Confidence 579999999 88888887 789999999999 99999988743 3334442 1247899999996 55
Q ss_pred HHHhhhHhhhhcCcEEeecC
Q 000957 1177 AQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1177 ~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
+..+|+++.....|.+...+
T Consensus 155 l~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 155 LTALADEVPNVKNLHVTALT 174 (222)
T ss_pred HHHHhhcCCCeEEEEEEEEE
Confidence 67789888877788886655
No 464
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.35 E-value=9e-07 Score=103.59 Aligned_cols=94 Identities=22% Similarity=0.319 Sum_probs=74.3
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
..+.|||||-| |+.||..+..+- =+||||||+.||=+.-..+|...|..+ +..|-|+|||.||++.+
T Consensus 478 ~a~TLSGGEaQ------RIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~L-----RDlGNTviVVEHDedti 546 (935)
T COG0178 478 SAGTLSGGEAQ------RIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRL-----RDLGNTVIVVEHDEDTI 546 (935)
T ss_pred cCCCcChhHHH------HHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHH-----HhcCCeEEEEecCHHHH
Confidence 34689999999 999999887664 578999999999999999999999998 45688999999999999
Q ss_pred HHhhhHhh------hhcCcEEeecCCcccccccc
Q 000957 1178 QLIGQRQH------AEKYYRVAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1178 ~~~~~~~~------~~~~~~v~~~~~~~s~~~~~ 1205 (1209)
. .||+++ -.+-|.|+..|++..+...+
T Consensus 547 ~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 547 R-AADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred h-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 7 222211 12337788888777665543
No 465
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.34 E-value=0.011 Score=68.42 Aligned_cols=11 Identities=18% Similarity=0.072 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 000957 987 SVYQTNISRNK 997 (1209)
Q Consensus 987 ~~l~~~i~~~~ 997 (1209)
..|...|..+.
T Consensus 441 QeL~~yi~~Le 451 (546)
T PF07888_consen 441 QELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 466
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.31 E-value=8.2e-07 Score=95.44 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=81.9
Q ss_pred HHHHHHHcCCcc----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1086 SYKVLMQTGDAE----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1086 ~~~~~~~~~~~~----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
+..++...|..+ ....+.||.|||- |+-||.++...|++++.||-.++||+.+...++.-|.++. .
T Consensus 486 AveILnraGlsDAvlyRr~f~ELStGQKe------R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela----R 555 (593)
T COG2401 486 AVEILNRAGLSDAVLYRRKFSELSTGQKE------RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA----R 555 (593)
T ss_pred HHHHHHhhccchhhhhhccHhhcCcchHH------HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH----H
Confidence 445666666544 1334789999999 9999999999999999999999999999999999999994 4
Q ss_pred CCCcEEEEEecCHHHHHHh-hhHhhhhcCcEEeec
Q 000957 1162 QENFQLIVITHDERFAQLI-GQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~-~~~~~~~~~~~v~~~ 1195 (1209)
..|.|+|+|||..++..++ -|.+....+|.+...
T Consensus 556 e~giTlivvThrpEv~~AL~PD~li~vgYg~v~~~ 590 (593)
T COG2401 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590 (593)
T ss_pred HhCCeEEEEecCHHHHhccCCceeEEeeccccccc
Confidence 5689999999999999988 455666666665443
No 467
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.31 E-value=1.4e-06 Score=91.02 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=61.9
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHH-HHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAA-LHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~-l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
.+.+|+|++++ ..+..++.+|++++|||||+|||+.....+... +..+ ...+.++|++||+.+++.
T Consensus 89 ~s~~~~e~~~l-------~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l-----~~~~~~vi~~tH~~~~~~- 155 (202)
T cd03243 89 RSTFMAELLEL-------KEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHL-----LEKGCRTLFATHFHELAD- 155 (202)
T ss_pred ceeHHHHHHHH-------HHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHH-----HhcCCeEEEECChHHHHH-
Confidence 35678888773 223344579999999999999999988877654 4444 234789999999998877
Q ss_pred hhhHhhhhcCcEEeecCCc
Q 000957 1180 IGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~~ 1198 (1209)
.|+.+.....+.|..++..
T Consensus 156 ~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 156 LPEQVPGVKNLHMEELITT 174 (202)
T ss_pred HhhcCCCeEEEEEEEEecC
Confidence 4555556667777777654
No 468
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.27 E-value=0.028 Score=68.42 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 697 PVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHT 776 (1209)
Q Consensus 697 ~~~~i~~l~~ei~~l~~ei~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~ 776 (1209)
.+..+..+..++..+...+..+...+.. .....+.++..+..+..++..+..+...+...+..+...-..+...+..
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~~i~~---~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~ 422 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITERIAE---QEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER 422 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666777777777777776666654 3345788888888888888888887777777777777666666666666
Q ss_pred HHHHHHHHHHhH
Q 000957 777 LREEKVKAANTL 788 (1209)
Q Consensus 777 l~~~~~~~~~~~ 788 (1209)
++..+..+...+
T Consensus 423 ~~~~L~~ikr~l 434 (569)
T PRK04778 423 YRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHH
Confidence 666666555444
No 469
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.22 E-value=1.9e-06 Score=83.82 Aligned_cols=85 Identities=20% Similarity=0.126 Sum_probs=76.2
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
.+.+|-|||. |+.|++.|++|-.+|+|||+|.-||...+..|.+.|++-. .+.|.|||..||-.+-++.+
T Consensus 145 mHkvSDGqrR------RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEc----e~RgatIVYATHIFDGLe~W 214 (291)
T KOG2355|consen 145 MHKVSDGQRR------RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEEC----EQRGATIVYATHIFDGLETW 214 (291)
T ss_pred Eeeccccchh------hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHH----hhcCcEEEEEeeeccchhhc
Confidence 3789999999 9999999999999999999999999999999999888874 45689999999999999988
Q ss_pred hhHhhhhcCcEEeec
Q 000957 1181 GQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~~~ 1195 (1209)
.++++-...|++...
T Consensus 215 pthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 215 PTHLVYIKSGKLVDN 229 (291)
T ss_pred chhEEEecCCeeeec
Confidence 888887888887664
No 470
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.21 E-value=1.4e-06 Score=107.97 Aligned_cols=104 Identities=20% Similarity=0.224 Sum_probs=79.8
Q ss_pred chhHHHHHHHHcCCcccc--ccC----CCChhhhhhhhHHHHHHHHHHhccCC-CeEEEeCCCCCCCHHhHHHHHHHHHH
Q 000957 1082 TRSYSYKVLMQTGDAELE--MRG----RCSAGQKVLASLIIRLALAETFCLNC-GILALDEPTTNLDGPNAESLAAALHR 1154 (1209)
Q Consensus 1082 ~~~~~~~~~~~~~~~~~~--~~~----~lSgG~k~l~sl~ir~~la~~~~~~~-~~l~lDEp~~~LD~~~~~~~~~~l~~ 1154 (1209)
+..|+..|+..++..+.. -+| -||.+||. ||.||--|+.+| .+|+|||||+|||..+.-.++..++.
T Consensus 902 k~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRK------rLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrk 975 (1391)
T KOG0065|consen 902 KYEYVEEVIELLELKEYADALVGLPGSGLSTEQRK------RLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRK 975 (1391)
T ss_pred HHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhc------eeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHH
Confidence 346788888887766421 223 49999999 999988889999 99999999999999999999999999
Q ss_pred HHHhhccCCCcEEEEEecCHH--HHHHhhhHhhh-hcCcEEeecCC
Q 000957 1155 IMEDRKGQENFQLIVITHDER--FAQLIGQRQHA-EKYYRVAKDDH 1197 (1209)
Q Consensus 1155 ~~~~~~~~~~~~~i~itH~~~--~~~~~~~~~~~-~~~~~v~~~~~ 1197 (1209)
+. ..|.+|+.+-|-+. .+++. |+... .+-|+++..|+
T Consensus 976 la-----~tGqtIlCTIHQPS~~ife~F-D~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 976 LA-----DTGQTILCTIHQPSIDIFEAF-DELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred HH-----hcCCeEEEEecCCcHHHHHHH-hHHHHHhcCCeEEEecC
Confidence 93 46889999999764 34433 44444 44466666665
No 471
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.19 E-value=3.2e-06 Score=86.83 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=50.6
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHH-HHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAA-LHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~-l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..+.+|+|+++++.++. .+.+|+++++|||++|+|+.....+... +..+. ...|.++|++||+.++.
T Consensus 58 ~~s~fs~~~~~l~~~l~-------~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~----~~~~~~iii~TH~~~l~- 125 (185)
T smart00534 58 GLSTFMVEMKETANILK-------NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLL----EKIGALTLFATHYHELT- 125 (185)
T ss_pred cccHHHHHHHHHHHHHH-------hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH----hcCCCeEEEEecHHHHH-
Confidence 34679999887433321 2368999999999999999987776544 44442 11378999999999755
Q ss_pred HhhhH
Q 000957 1179 LIGQR 1183 (1209)
Q Consensus 1179 ~~~~~ 1183 (1209)
.+|+.
T Consensus 126 ~~~~~ 130 (185)
T smart00534 126 KLADE 130 (185)
T ss_pred HHhhc
Confidence 45543
No 472
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.1e-05 Score=86.59 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=74.9
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhh
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIG 1181 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~ 1181 (1209)
..||-|||. |+|+.-|+.-+-|+|+|||.-+-=||.=++-|...+...++ ..|.|||.||||...+. ++
T Consensus 447 ~kLStGQkK------RlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK----~qGKTI~aIsHDd~YF~-~A 515 (546)
T COG4615 447 LKLSTGQKK------RLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK----EQGKTIFAISHDDHYFI-HA 515 (546)
T ss_pred cccccchHH------HHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHH----HhCCeEEEEecCchhhh-hH
Confidence 469999999 99999999999999999999999999999999988877763 46899999999998886 67
Q ss_pred hHhhhhcCcEEeecC
Q 000957 1182 QRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1182 ~~~~~~~~~~v~~~~ 1196 (1209)
|+..-+..|+++...
T Consensus 516 Drll~~~~G~~~e~t 530 (546)
T COG4615 516 DRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHhcCceeecc
Confidence 888999999998764
No 473
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.15 E-value=2.5e-06 Score=83.19 Aligned_cols=31 Identities=48% Similarity=0.607 Sum_probs=30.1
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCC
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTT 1138 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~ 1138 (1209)
..|||||++ |++||++|+.+|++|||||||+
T Consensus 107 ~~LS~Ge~~------rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 107 SSLSGGEKQ------RLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GGSCHHHHH------HHHHHHHHHTTSSEEEEESTTT
T ss_pred chhhHHHHH------HHHHHHHHHcCCCEEEEeCCCC
Confidence 789999999 9999999999999999999996
No 474
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.15 E-value=1.4e-06 Score=94.15 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=66.0
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
.+..||||+.| |+|++.++..++++++.|||.++||.+.+..-...++.+| ....++-.+|-||.-++..
T Consensus 453 evq~lSggelQ------Rval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfi----lhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 453 EVQGLSGGELQ------RVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI----LHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred HhhcCCchhhH------HHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHH----HhccchhhhhhhHHHHHHh
Confidence 34689999999 9999999999999999999999999999999999888886 4466788999999998887
Q ss_pred hhhHh
Q 000957 1180 IGQRQ 1184 (1209)
Q Consensus 1180 ~~~~~ 1184 (1209)
++|++
T Consensus 523 ladrv 527 (592)
T KOG0063|consen 523 LADRV 527 (592)
T ss_pred hccee
Confidence 76654
No 475
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.14 E-value=2.5e-06 Score=92.24 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=71.5
Q ss_pred ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1098 LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1098 ~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
.+.+..||||+-| |+|||.+.++..+++++|||.++||...+...+..|+.++ ..+.=+|||-||+.++
T Consensus 208 ~re~~~lsggelq------rfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~-----~p~~YiIVVEHDLsVL 276 (592)
T KOG0063|consen 208 DREVEQLSGGELQ------RFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLI-----NPDRYIIVVEHDLSVL 276 (592)
T ss_pred Hhhhhhcccchhh------hhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhh-----CCCCeEEEEEeechHH
Confidence 4456789999999 9999999999999999999999999999999999999884 4667899999999999
Q ss_pred HHhhhHhhhhc
Q 000957 1178 QLIGQRQHAEK 1188 (1209)
Q Consensus 1178 ~~~~~~~~~~~ 1188 (1209)
..++|.+.+.+
T Consensus 277 DylSDFiCcLY 287 (592)
T KOG0063|consen 277 DYLSDFICCLY 287 (592)
T ss_pred HhhhcceeEEe
Confidence 99988876654
No 476
>PRK14079 recF recombination protein F; Provisional
Probab=98.14 E-value=2.7e-05 Score=88.18 Aligned_cols=53 Identities=25% Similarity=0.237 Sum_probs=44.6
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhc---cCCCeEEEeCCCCCCCHHhHHHHHHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFC---LNCGILALDEPTTNLDGPNAESLAAALHR 1154 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~---~~~~~l~lDEp~~~LD~~~~~~~~~~l~~ 1154 (1209)
..+|+||+.+++|++++|-+..+. ..||+++||||+++||+.++..|.+.|..
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~ 317 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS 317 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc
Confidence 579999999888877777555543 78999999999999999999999887754
No 477
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.12 E-value=0.0034 Score=66.92 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 000957 987 SVYQTNI 993 (1209)
Q Consensus 987 ~~l~~~i 993 (1209)
..+...+
T Consensus 221 ~~~~~el 227 (237)
T PF00261_consen 221 KKVQEEL 227 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 478
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.11 E-value=0.017 Score=65.01 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 000957 704 LFQEIQLWQKQVDD 717 (1209)
Q Consensus 704 l~~ei~~l~~ei~~ 717 (1209)
+..++..+...|+.
T Consensus 52 ye~el~~lr~~id~ 65 (312)
T PF00038_consen 52 YEEELRELRRQIDD 65 (312)
T ss_dssp HHHHHHCHHHHHHH
T ss_pred hhhHHHHhHHhhhh
Confidence 44444444444444
No 479
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.11 E-value=2.1e-06 Score=95.22 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=57.6
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
++..-||||+|| |+++||.|++.|.+.+|||-|++.-+.--..+.+..++ .|+++|-|||.+.+..
T Consensus 608 dWkd~LsgGekQ------R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--------~gi~llsithrpslwk 673 (728)
T KOG0064|consen 608 DWKDVLSGGEKQ------RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--------AGISLLSITHRPSLWK 673 (728)
T ss_pred cHHhhccchHHH------HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--------cCceEEEeecCccHHH
Confidence 444679999999 99999999999999999999999998777777665554 4899999999999886
No 480
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.10 E-value=0.0072 Score=69.74 Aligned_cols=18 Identities=11% Similarity=-0.040 Sum_probs=12.3
Q ss_pred HhccCCCeEEEeC-CCCCC
Q 000957 1123 TFCLNCGILALDE-PTTNL 1140 (1209)
Q Consensus 1123 ~~~~~~~~l~lDE-p~~~L 1140 (1209)
++.+||..+|++. ++.|-
T Consensus 503 ~~~~Pp~~lV~~~~~~wg~ 521 (546)
T KOG0977|consen 503 AVHNPPESLVMKGENTWGI 521 (546)
T ss_pred CccCCCcceeecCCccccc
Confidence 3557888888886 66554
No 481
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.05 E-value=0.071 Score=64.65 Aligned_cols=458 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhhcccchHHHHHHHHHHHHHHHH
Q 000957 317 KMAWDSYLDANDRWKNIEA-------QKQAKMEIKAGILKHIKEKENERDSFE-LQISNLNLSHIDERENKMRIEVERKT 388 (1209)
Q Consensus 317 ~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~i~~~~-~~~~~~~l~~~e~~l~~~~~~l~~~~ 388 (1209)
......++.+...+..+.+ ..-....-.......+......-..+. .. +...+..+..++..+..
T Consensus 21 k~~~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~-----~~~ie~~L~~ae~~~~~-- 93 (560)
T PF06160_consen 21 KRYYKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQ-----LPEIEEQLFEAEEYADK-- 93 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHhc--
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000957 389 NQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSED-RVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRL 467 (1209)
Q Consensus 389 ~~~~~~~~~~~i~~~~~~i~~l~~el~~l~~e~~~l~~~~~~-~~~l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~ 467 (1209)
.........+......+..++..+..+..++..+...-.. +.....++..-...++.+-......++.+..+
T Consensus 94 --~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~L----- 166 (560)
T PF06160_consen 94 --YRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEEL----- 166 (560)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHH-----
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcCC---
Q 000957 468 PLDRDLKKEITQALRALLTEFDDLSS-KSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFS--- 543 (1209)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~--- 543 (1209)
+..+......+..-..-... ....|...+..++..+..+...+...+.-+..+...++..+..+...+..
T Consensus 167 ------e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 167 ------EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred ------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred ------hhhHHHHHHHHHHHHHHHHhhhhhHHhHHHhhHHHHHHHhhCCCCccccCCCCchHHHHHHHHHHHHHhccHHH
Q 000957 544 ------IDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEH 617 (1209)
Q Consensus 544 ------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~r~~~~~e~~~~~~~l~~~~~~~~~~ 617 (1209)
...++..+..+...+..+...+..+.-
T Consensus 241 ~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l----------------------------------------------- 273 (560)
T PF06160_consen 241 EGYYLEHLDIEEEIEQIEEQLEEALALLKNLEL----------------------------------------------- 273 (560)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH-----------------------------------------------
Q ss_pred HHHhhHhhhhhHHHHHHHHhhHhHHHHHHhccccCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhh
Q 000957 618 MKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQP 697 (1209)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~ 697 (1209)
......+..+....+.+-..-.........-...+|.+...+..+......+..+++.+...-.--.........+...
T Consensus 274 -~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~ 352 (560)
T PF06160_consen 274 -DEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQ 352 (560)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 698 VETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTL 777 (1209)
Q Consensus 698 ~~~i~~l~~ei~~l~~ei~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l 777 (1209)
+.. +......+...+.. .....+.+...+..+...+..+..+...+...+..+...=..++..+..+
T Consensus 353 l~~---l~~~~~~~~~~i~~----------~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~ 419 (560)
T PF06160_consen 353 LKE---LEKRYEDLEERIEE----------QQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKL 419 (560)
T ss_pred HHH---HHHHHHHHHHHHHc----------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 778 REEKVKAANTLRDVK------KAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQK 851 (1209)
Q Consensus 778 ~~~~~~~~~~~~~~~------~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 851 (1209)
+..+..++..+.+.. ............|..+...+....-.+..+...+..+...+..+..........+.-..
T Consensus 420 ~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E 499 (560)
T PF06160_consen 420 KQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAE 499 (560)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 000957 852 INFQ 855 (1209)
Q Consensus 852 ~~l~ 855 (1209)
.-++
T Consensus 500 ~~iQ 503 (560)
T PF06160_consen 500 QLIQ 503 (560)
T ss_pred HHHH
No 482
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.02 E-value=7.4e-06 Score=84.87 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=52.6
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHH-HHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAA-LHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~-l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..+.+|+|++++. .+..++.+|++++||||+.|+|+.....+... +..+ ...|.++|++||+.+++.
T Consensus 88 ~~S~fs~e~~~~~-------~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l-----~~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 88 NLSTFASEMSETA-------YILDYADGDSLVLIDELGRGTSSADGFAISLAILECL-----IKKESTVFFATHFRDIAA 155 (204)
T ss_pred hhhHHHHHHHHHH-------HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHH-----HhcCCEEEEECChHHHHH
Confidence 3467999999831 22234588999999999999999776666544 4444 234789999999999998
Q ss_pred Hhhh
Q 000957 1179 LIGQ 1182 (1209)
Q Consensus 1179 ~~~~ 1182 (1209)
.++.
T Consensus 156 ~~~~ 159 (204)
T cd03282 156 ILGN 159 (204)
T ss_pred Hhhc
Confidence 6653
No 483
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.02 E-value=8.3e-06 Score=90.99 Aligned_cols=67 Identities=28% Similarity=0.370 Sum_probs=48.4
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNC---GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~---~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
....+|.|++++ ++|+..+...+ +++++|||.++|.|.....|+++|..+ ...+.||||+||.+.+
T Consensus 233 ~~~~~S~G~~~~------l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~-----~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 233 PLSSLSSGEKRL------LSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKEL-----SKKNIQVIITTHSPFI 301 (303)
T ss_dssp GGS---HHHHHH------HHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHT-----GGGSSEEEEEES-GGG
T ss_pred eeccCCHHHHHH------HHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhh-----CccCCEEEEeCccchh
Confidence 346789999994 44444433332 999999999999999999999988776 2247899999999876
Q ss_pred H
Q 000957 1177 A 1177 (1209)
Q Consensus 1177 ~ 1177 (1209)
+
T Consensus 302 l 302 (303)
T PF13304_consen 302 L 302 (303)
T ss_dssp -
T ss_pred c
Confidence 5
No 484
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.99 E-value=0.0033 Score=66.94 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000957 879 RFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQ 918 (1209)
Q Consensus 879 ~l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~ 918 (1209)
.+..+..++.+.+......+..+..+...+..+...+...
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555666666655555543
No 485
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.97 E-value=0.097 Score=63.34 Aligned_cols=400 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHH
Q 000957 656 AEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVET-ADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEE 734 (1209)
Q Consensus 656 le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~-i~~l~~ei~~l~~ei~~l~~~l~~~~~~~~~~~e 734 (1209)
+..+|..++..+..+..++++....+-.++..++.++.--..+.. +..+..+..+...-+..+..-.....-...++.+
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhH
Q 000957 735 IQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRW--HTLREEKVKAANTLRDVKKA----EEELEHLMEEKGQL 808 (1209)
Q Consensus 735 ~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~--~~l~~~~~~~~~~~~~~~~l----~~~~~~l~~~i~~~ 808 (1209)
---...-....+.++...-..+..+..-+..++..++.+- ..+..++.+++.++..+..- ..++.+|..++..+
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHcCCChH-------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccch
Q 000957 809 DLDEKLLAEASGPLSK-------EKEKLLSDYNDLKV--KLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYD--LRKD 877 (1209)
Q Consensus 809 ~~~i~~~~~~l~~l~~-------~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~--~~~~ 877 (1209)
...-+.+...++-++. +-..+..+.+++.. .+....+..+-.-.--......+....+.+-.+.. ..-.
T Consensus 335 q~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs 414 (1195)
T KOG4643|consen 335 QVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLS 414 (1195)
T ss_pred HHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000957 878 ERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVR-NQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIG 956 (1209)
Q Consensus 878 ~~l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~-~~~~~~~~l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~~ 956 (1209)
.+.+.++..+.+.......++..-+.+..+...+..+.. ...+..++-..|-...+......++..+...+..++..++
T Consensus 415 ~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknln 494 (1195)
T KOG4643|consen 415 KKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLN 494 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -CcccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH--------------
Q 000957 957 -GVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKT-------------- 1021 (1209)
Q Consensus 957 -~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~~i~~~~-------------- 1021 (1209)
.++....+..+|.+.++.+..++....-...-+...+..+...+. .|..-....-...-.+++
T Consensus 495 k~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~--~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~ 572 (1195)
T KOG4643|consen 495 KSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLG--NLEEENAHLLKQIQSLKTTSQNGALLEQNNND 572 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhcHHHHHHHHhh
Q 000957 1022 TEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRE 1057 (1209)
Q Consensus 1022 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 1057 (1209)
.+.....+..|+++|..........-.+-.|..+.+
T Consensus 573 lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~ 608 (1195)
T KOG4643|consen 573 LELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFE 608 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
No 486
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.97 E-value=0.093 Score=62.97 Aligned_cols=492 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHH
Q 000957 398 INIRQKQSELFAMDQKIKALNREKDVLAG-DSEDRVKLALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKE 476 (1209)
Q Consensus 398 ~~i~~~~~~i~~l~~el~~l~~e~~~l~~-~~~~~~~l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 476 (1209)
........++..++.++..+..++..... .......|..-+.-+......|..............-.
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~------------ 94 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSEL------------ 94 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000957 477 ITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKE 556 (1209)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 556 (1209)
..+....-.-+........+...+..+..++..+-..|.....+|...+..+..++..-..+....+...........
T Consensus 95 --~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~ 172 (522)
T PF05701_consen 95 --AKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEE 172 (522)
T ss_pred --hHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhHHhHHHhhHHHHHHHhhCCCCccccCCCCchHHHHHHHHHHHHHhccHHHHHHhhHhhhhhHHHHHHHH
Q 000957 557 KRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLD 636 (1209)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~r~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 636 (1209)
.+..+...+..+.+......-....+.....-..-.+.-.......-+.....++..+...+......-..+......+.
T Consensus 173 kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~ 252 (522)
T PF05701_consen 173 KVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELE 252 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHhHHHHHHhccccCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHH-HHHHHHHHHHHHHHH
Q 000957 637 KLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVET-ADRLFQEIQLWQKQV 715 (1209)
Q Consensus 637 ~l~~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~-i~~l~~ei~~l~~ei 715 (1209)
.+...+..+.... +.... ............+.....+++..+..+..+..-...+.. +..+..++.....++
T Consensus 253 ~Lq~El~~~~~~~------l~~~~-~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el 325 (522)
T PF05701_consen 253 SLQAELEAAKESK------LEEEA-EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEEL 325 (522)
T ss_pred HHHHHHHHHHHHH------HhhhH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000957 716 DDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAE 795 (1209)
Q Consensus 716 ~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~l~ 795 (1209)
..+...... ....+..+..++..++.++..+...-.........+...++.+..+....+......+.. +..+.
T Consensus 326 ~~lke~e~~---a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E---~~~~k 399 (522)
T PF05701_consen 326 ERLKEREKE---ASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEE---VEKAK 399 (522)
T ss_pred HHHHHHHHH---HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000957 796 EELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLR 875 (1209)
Q Consensus 796 ~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~ 875 (1209)
..+......+.....++......++.....-..+...+..+..............-..+.-....+..+.+.........
T Consensus 400 ~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a 479 (522)
T PF05701_consen 400 EEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELA 479 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHH
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000957 876 KDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRN 917 (1209)
Q Consensus 876 ~~~~l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~ 917 (1209)
.. +......++......-..+-.++.....+|...+..+..
T Consensus 480 ~k-kva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~ 520 (522)
T PF05701_consen 480 EK-KVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEE 520 (522)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 487
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.96 E-value=0.055 Score=60.94 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHH
Q 000957 120 SISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTL-KDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIEDTDEEL 198 (1209)
Q Consensus 120 ~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~eL 198 (1209)
.+..+..++..|-+.+..|+.+...+..++..+.... ...... ...+...+..+...+..+..... .+......+
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~---~~~ye~el~~lr~~id~~~~eka-~l~~e~~~l 80 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRI---KEMYEEELRELRRQIDDLSKEKA-RLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH---HHHHHHHHHCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCccc---ccchhhHHHHhHHhhhhHHHHhh-HHhhhhhhH
Confidence 3444555555555555555555555555555444432 111111 22223333444444444443333 333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000957 199 KNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAG 252 (1209)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~ 252 (1209)
...+..|..++.........++.++..++..+.........+...+..|..++.
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555554444
No 488
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.96 E-value=0.074 Score=61.70 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=45.9
Q ss_pred HHHHHHHHH--HHHhhcCCcccHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhc
Q 000957 941 FASEIESLE--ERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLK 1001 (1209)
Q Consensus 941 l~~ei~~l~--~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~ 1001 (1209)
+..+|..+. ...+.... +.+.++..+.+.....|++.++.+.+.-..+...|..+.-++.
T Consensus 273 Y~~kI~~i~~~~~~~~~~~-~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 273 YKRKIQEIRTSAERANVEQ-NYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD 334 (546)
T ss_pred HHHHHHHHHhhhccccchh-HHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Confidence 355566665 33344445 7788888899999999999999988888888888888887765
No 489
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.95 E-value=0.078 Score=61.52 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=6.1
Q ss_pred CCCCccccCCC
Q 000957 585 HHVCPCCERPF 595 (1209)
Q Consensus 585 ~~~c~~C~r~~ 595 (1209)
-+.|.+|..+-
T Consensus 500 l~~~~l~~~~~ 510 (546)
T PF07888_consen 500 LGHYSLCEQGQ 510 (546)
T ss_pred CCCcCcccCCC
Confidence 34566666553
No 490
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.91 E-value=2.2e-05 Score=82.48 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=56.9
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCC---CCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEP---TTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp---~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..+|+|+...++=..+++.+...+.+|++++|||| |++||+... +...+..+. ...+.++|++||+.++.
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~----~~~~~~vi~~TH~~~l~- 156 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLH----EKIGAKTLFATHYHELT- 156 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHH----hccCCcEEEEeCcHHHH-
Confidence 46899987644322233333334579999999999 999998552 222333331 11367999999997654
Q ss_pred HhhhHhhhhcCcEEeecCCccc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
.++++......|.+...+.+.+
T Consensus 157 ~l~~~~~~v~~~~~~~~~~~~~ 178 (216)
T cd03284 157 ELEGKLPRVKNFHVAVKEKGGG 178 (216)
T ss_pred HHhhcCCCeEEEEEEEEeeCCe
Confidence 4666654445666655544433
No 491
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.91 E-value=0.048 Score=57.76 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=48.6
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Q 000957 817 EASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKS 896 (1209)
Q Consensus 817 ~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~i~~ 896 (1209)
..+.++.++++.+.....++..++....+++++.-..+...+.....+...+..|.. .+-.....+.++...+..
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he-----~~ve~~~~~~e~~ee~~~ 232 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE-----EFVELSKKIDELHEEFRN 232 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555555555555544 444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000957 897 CKIRTDEILVELDRFKD 913 (1209)
Q Consensus 897 ~~~~i~~l~~~i~~l~~ 913 (1209)
+..++..+...|..+..
T Consensus 233 ~~~elre~~k~ik~l~~ 249 (294)
T COG1340 233 LQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555554444444443
No 492
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.89 E-value=0.0055 Score=68.70 Aligned_cols=88 Identities=22% Similarity=0.322 Sum_probs=66.3
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCC-----CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNC-----GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~-----~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
.||-|++.-.++ .+-||+ |.-+| .++++|-|.+.+|..+......+|+.. ...+.||||-|||-.|+
T Consensus 529 ~LSEGekt~iaf--~yflak-L~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~-----~t~~kQviVLtHntYF~ 600 (758)
T COG4694 529 TLSEGEKTFIAF--LYFLAK-LKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEE-----KTNIKQVIVLTHNTYFY 600 (758)
T ss_pred cccccchhHHHH--HHHHHH-HHhCcccccCeeEEecCCccccchhHHHHHHHHHHHH-----HhCceEEEEEeccceeh
Confidence 499999994443 556777 34444 678999999999999999999999887 45788999999999998
Q ss_pred HHhhhHhhhhcC-------cEEeecCCc
Q 000957 1178 QLIGQRQHAEKY-------YRVAKDDHQ 1198 (1209)
Q Consensus 1178 ~~~~~~~~~~~~-------~~v~~~~~~ 1198 (1209)
..+.+.....++ |+|.++.+.
T Consensus 601 rd~~~~~~~~RyNkgk~~f~~ik~~~n~ 628 (758)
T COG4694 601 RDITLELDLKRYNKGKYSFWIIKKDNNV 628 (758)
T ss_pred HHHHhhhccccccccceEEEEEeCCCCC
Confidence 877654443333 566665433
No 493
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.84 E-value=2.3e-05 Score=97.64 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=63.7
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
.+.+|||+++ +..|++++ .+|++++||||++|+||.....++..+.+.+ ...|.++|++||+.+++...
T Consensus 388 lStfS~~m~~------~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l----~~~~~~vIitTH~~el~~~~ 456 (782)
T PRK00409 388 LSTFSGHMTN------IVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL----RKRGAKIIATTHYKELKALM 456 (782)
T ss_pred hhHHHHHHHH------HHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH----HHCCCEEEEECChHHHHHHH
Confidence 3679999999 77777766 7899999999999999999998876544432 23578999999999999877
Q ss_pred hhHhhhhcCcEEeec
Q 000957 1181 GQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~~~ 1195 (1209)
++...+. .+.+.++
T Consensus 457 ~~~~~v~-~~~~~~d 470 (782)
T PRK00409 457 YNREGVE-NASVEFD 470 (782)
T ss_pred hcCCCeE-EEEEEEe
Confidence 6655543 3444444
No 494
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.83 E-value=5.3e-05 Score=78.43 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=41.6
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHH-HHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAA-ALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
.+|++++|||||+|||+.....+.. .+..+ ...|.++|+|||+.+++..+
T Consensus 104 ~~p~llllDEp~~glD~~~~~~l~~~ll~~l-----~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFL-----KNKNTIGIISTHDLELADLL 154 (199)
T ss_pred CCCeEEEEecccCCCCHHHHHHHHHHHHHHH-----HHCCCEEEEEcCcHHHHHhh
Confidence 3899999999999999999887654 56665 23478999999999999865
No 495
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.78 E-value=4.3e-05 Score=95.77 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHH-HhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 000957 885 EKKSQSESEVKSCKIRTDEILVELDRFKDIVRNQ--------DQIR-RNIEDNLN---YRETKAKVDKFASEIESLEERV 952 (1209)
Q Consensus 885 ~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~--------~~~~-~~l~~n~~---~~~~~~~l~~l~~ei~~l~~~~ 952 (1209)
..+..+..++..++.++..+..++..+...+... ...+ -.+++|-. .......+..+..|.+.|...+
T Consensus 503 e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 503 EELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544321 0000 01233322 1112357777788888887777
Q ss_pred hhcC
Q 000957 953 LKIG 956 (1209)
Q Consensus 953 ~~~~ 956 (1209)
..+.
T Consensus 583 ~~le 586 (722)
T PF05557_consen 583 RSLE 586 (722)
T ss_dssp HHHT
T ss_pred Hhcc
Confidence 5544
No 496
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.76 E-value=5.3e-05 Score=73.13 Aligned_cols=65 Identities=25% Similarity=0.312 Sum_probs=54.4
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
...|-||-. --.+.+. +.+.+++|||||-++|-|...-.+...|+++ ...|.||||.||-+=+++
T Consensus 128 h~~SHGEsf------~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~l-----a~sGaQ~IiATHSPiLlA 192 (233)
T COG3910 128 HHMSHGESF------LAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDL-----ADSGAQIIIATHSPILLA 192 (233)
T ss_pred hhhccchHH------HHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHH-----HhcCCeEEEEecChhhee
Confidence 578999987 2223333 4789999999999999999999999999998 567899999999987765
No 497
>PF13175 AAA_15: AAA ATPase domain
Probab=97.73 E-value=5.6e-05 Score=89.64 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=62.0
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCC----eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCG----ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~----~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
+...+|.|.++++.|++.++....-...++ ++++|||-++|-|..+..|...|.++. ...+.|||++||.+.
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~----~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLS----KNNNIQIIITTHSPF 413 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHh----ccCCCEEEEECCChh
Confidence 446899999999999888777665555444 999999999999999999999999984 335789999999987
Q ss_pred HH
Q 000957 1176 FA 1177 (1209)
Q Consensus 1176 ~~ 1177 (1209)
++
T Consensus 414 ii 415 (415)
T PF13175_consen 414 II 415 (415)
T ss_pred hC
Confidence 64
No 498
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.73 E-value=0.18 Score=58.76 Aligned_cols=691 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred ccccchhhhhhhhhcC---------CHHhhhhhee------------eccCCCC--------------------------
Q 000957 25 YRCADMDREVPALMGV---------SKAILENVIF------------VHQDEAN-------------------------- 57 (1209)
Q Consensus 25 ~k~~~~d~~~~~~lgv---------s~ail~~Vif------------chQees~-------------------------- 57 (1209)
+||.+.|.-+|--|.+ |.|+|-+|=| ||=.+.+
T Consensus 12 nkc~e~d~~~pf~~~~~s~~~e~~d~~~~~qk~n~~~~l~~~~~~~~~~~~egl~~~~~ense~ms~LySKL~~EaEKIk 91 (786)
T PF05483_consen 12 NKCIEDDFSLPFAMTNLSKNGENIDSDPALQKVNFLPMLEQVDNSDSCHYQEGLKDSDFENSEPMSRLYSKLYKEAEKIK 91 (786)
T ss_pred ccCcccccCCcccccccccccccCCccHHHHHhcchhHHHHhccccchhhhhccccccccccHHHHHHHHHHHHHHHHHH
Q ss_pred -CCCCCchhhHHhhHHhhhhhhhHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 58 -WPLQDPSTLKKKFDDIFSATRYTK----------------------ALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAA 114 (1209)
Q Consensus 58 -wpl~ep~~Lkk~fDdIf~a~ky~k----------------------ale~lk~~rke~~~~lK~~~~~l~~lk~~ke~a 114 (1209)
|.++-.+.++.+=--+-++-+-+. -+..-++++++-.+.--.+..-.+.+...-++.
T Consensus 92 ~WKv~vesd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsaEK~ 171 (786)
T PF05483_consen 92 KWKVQVESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQRSAEKM 171 (786)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 000957 115 YKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLK-DLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIED 193 (1209)
Q Consensus 115 ~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 193 (1209)
..|...-+....-.-.+..-|..+-...++++-+...-+.... .+.....+++.++.. +...+......+. .|..
T Consensus 172 ~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leee---y~~E~n~kEkqvs-~L~~ 247 (786)
T PF05483_consen 172 KKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEE---YKKEVNDKEKQVS-LLQT 247 (786)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHH-HHHH
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHcC
Q 000957 194 TDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTIQKLFARHN 273 (1209)
Q Consensus 194 ~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1209)
...+=...+.++.-.+.+.+..+..++.........+.....+...+..++......+.........+...+
T Consensus 248 q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~l-------- 319 (786)
T PF05483_consen 248 QLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDL-------- 319 (786)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 274 LGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDELALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKE 353 (1209)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 353 (1209)
......+..+..+-.....++..........+.++...+..++..++..+.........+..
T Consensus 320 ------------------q~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~ 381 (786)
T PF05483_consen 320 ------------------QQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKI 381 (786)
T ss_pred ------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Q 000957 354 KENERDSFELQISNLNLSHIDERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVK 433 (1209)
Q Consensus 354 ~~~~i~~~~~~~~~~~l~~~e~~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~i~~l~~el~~l~~e~~~l~~~~~~~~~ 433 (1209)
+...+..-... +..+......-+-++..|...+..-.+..+....
T Consensus 382 l~~eLqkks~e-----------------------------------leEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~ 426 (786)
T PF05483_consen 382 LTMELQKKSSE-----------------------------------LEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQ 426 (786)
T ss_pred HHHHHHHhhHH-----------------------------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 000957 434 LALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSSKSREADKEVNMLQMKIQEVT 513 (1209)
Q Consensus 434 l~~~~~~l~~k~~~l~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 513 (1209)
+.....++.....++..++.... .-..++...+......-..-...+..+..++..-.-+...+.
T Consensus 427 ~eki~E~lq~~eqel~~llq~~e---------------kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt 491 (786)
T PF05483_consen 427 FEKIAEELQGTEQELTGLLQIRE---------------KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELT 491 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHhhhhhHHhHHHhhHHHHHHHhhCCCCccccC
Q 000957 514 DNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCER 593 (1209)
Q Consensus 514 ~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~C~r 593 (1209)
..+..+..+-.............+...-.+...-..--...-..+..+...-..+...+.....-+......-.|.+-.+
T Consensus 492 ~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ks 571 (786)
T PF05483_consen 492 VNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKS 571 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred CCCchHHHHHHHHHHHHHhccHHHHHHhhHhhhhhHHHHHHHHhhHhHHHHHHhccccCcchHHHHHHHHHHHHHHHHHh
Q 000957 594 PFSAEEEDEFVKKQRVKAASSAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQA 673 (1209)
Q Consensus 594 ~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~ 673 (1209)
.-.......-+......+.-+..++..+...+.........|..-......-.......+..++-.+..+..++..+...
T Consensus 572 Een~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~ 651 (786)
T PF05483_consen 572 EENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKK 651 (786)
T ss_pred HHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHH-HHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHH
Q 000957 674 FDDVLGVLA-QIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNE 752 (1209)
Q Consensus 674 ~e~~~~~l~-~~~~~~~~~~~l~~~~~~i~~l~~ei~~l~~ei~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e 752 (1209)
+++....+. .+.+.......+...+..+.-...+.-.+..+++ -.++-.
T Consensus 652 ~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~Etd------------------------------lrCQhK 701 (786)
T PF05483_consen 652 HEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETD------------------------------LRCQHK 701 (786)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH------------------------------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHH
Q 000957 753 LEKLRDEQRYMENDLSNIQIRW-HTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKE 825 (1209)
Q Consensus 753 ~~~l~~~~~~~~~~l~~l~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~ 825 (1209)
|..+..-.+.+......+-.+- ..+......-+....-...+.-.+..+..++..++..+..-..+-+.+..+
T Consensus 702 IAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QLk~e~~eKE~l~~e 775 (786)
T PF05483_consen 702 IAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNELSSLKKQLKTERTEKEKLKKE 775 (786)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc
No 499
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.62 E-value=0.00016 Score=75.81 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=48.7
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHH-HHHHHHHHHhhccCCCcEEEEEecCHHHHHHhh
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESL-AAALHRIMEDRKGQENFQLIVITHDERFAQLIG 1181 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~ 1181 (1209)
|++++.+++.+|.+++||||++|+|+.....+ ...|..+.+. ...+..+|++||+.+++..+.
T Consensus 98 ~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~--~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 98 QVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR--GPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEcChHHHHHhhh
Confidence 78888888999999999999999999765444 4566666321 112358999999999998653
No 500
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.26 Score=57.55 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=61.6
Q ss_pred CCCChhhhh-hhhHHHHHHHHHHhccC----C--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1102 GRCSAGQKV-LASLIIRLALAETFCLN----C--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1102 ~~lSgG~k~-l~sl~ir~~la~~~~~~----~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
+.+|||||. ||+-.+--+|+-.||-+ | +++||||.++-=|+......+.+++++ |+++++||-.
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f--------glh~v~iTPl- 1059 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF--------GLHAVFITPL- 1059 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc--------CceEEEechH-
Confidence 469999986 55566666666677743 3 789999999999999999888888776 7999999983
Q ss_pred HHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1175 RFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1175 ~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
..+.-+.+ ++-..+-|.+.|.|.|-
T Consensus 1060 k~I~~l~~--~v~S~ivVh~~~gpdsq 1084 (1104)
T COG4913 1060 KEIRLLRH--HVRSAIVVHRREGPDSQ 1084 (1104)
T ss_pred HHHHHHHh--hccceEEEecCCCCcch
Confidence 33333322 22333445555444443
Done!