Query 000957
Match_columns 1209
No_of_seqs 343 out of 2916
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 03:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 99.8 4.3E-20 1.5E-24 204.5 9.1 146 1050-1205 102-255 (366)
2 3gfo_A Cobalt import ATP-bindi 99.8 9.6E-20 3.3E-24 196.4 5.9 146 1049-1204 80-234 (275)
3 4g1u_C Hemin import ATP-bindin 99.8 5E-19 1.7E-23 190.6 10.5 146 1049-1204 81-238 (266)
4 2olj_A Amino acid ABC transpor 99.8 5.8E-19 2E-23 189.3 10.7 144 1049-1203 96-248 (263)
5 1b0u_A Histidine permease; ABC 99.8 4.5E-19 1.5E-23 191.0 9.7 143 1050-1203 90-242 (262)
6 3fvq_A Fe(3+) IONS import ATP- 99.8 8.4E-19 2.9E-23 194.4 10.0 143 1053-1205 80-230 (359)
7 3tif_A Uncharacterized ABC tra 99.8 7.8E-19 2.7E-23 186.0 9.0 137 1053-1200 83-231 (235)
8 2onk_A Molybdate/tungstate ABC 99.7 9E-19 3.1E-23 185.5 8.1 141 1053-1203 70-216 (240)
9 3rlf_A Maltose/maltodextrin im 99.7 9.6E-19 3.3E-23 195.2 7.5 142 1053-1204 75-224 (381)
10 3d31_A Sulfate/molybdate ABC t 99.7 1.9E-18 6.5E-23 192.0 8.4 144 1052-1205 71-219 (348)
11 2pcj_A ABC transporter, lipopr 99.7 2.5E-18 8.5E-23 180.8 8.8 133 1053-1197 82-222 (224)
12 1vpl_A ABC transporter, ATP-bi 99.7 2.1E-18 7.2E-23 184.3 8.4 141 1051-1202 86-234 (256)
13 2yyz_A Sugar ABC transporter, 99.7 2.7E-18 9.2E-23 191.3 9.0 142 1053-1204 75-224 (359)
14 1ji0_A ABC transporter; ATP bi 99.7 3E-18 1E-22 182.3 9.0 138 1054-1202 82-227 (240)
15 2qi9_C Vitamin B12 import ATP- 99.7 6.8E-18 2.3E-22 179.6 10.6 141 1049-1202 69-221 (249)
16 1oxx_K GLCV, glucose, ABC tran 99.7 4.3E-18 1.5E-22 190.1 9.3 142 1053-1204 82-231 (353)
17 3kta_B Chromosome segregation 99.7 3.2E-18 1.1E-22 170.1 7.2 142 1041-1206 6-152 (173)
18 2yz2_A Putative ABC transporte 99.7 2.9E-18 9.8E-23 185.4 7.4 142 1051-1203 76-227 (266)
19 1z47_A CYSA, putative ABC-tran 99.7 4.3E-18 1.5E-22 189.0 8.6 142 1053-1204 87-236 (355)
20 1g6h_A High-affinity branched- 99.7 3.4E-18 1.1E-22 184.0 7.5 139 1051-1200 80-239 (257)
21 1v43_A Sugar-binding transport 99.7 4.4E-18 1.5E-22 190.6 8.0 142 1053-1204 83-232 (372)
22 2it1_A 362AA long hypothetical 99.7 3.6E-18 1.2E-22 190.6 7.1 142 1053-1204 75-224 (362)
23 1g29_1 MALK, maltose transport 99.7 7.8E-18 2.7E-22 189.2 8.6 142 1053-1204 81-230 (372)
24 2nq2_C Hypothetical ABC transp 99.7 1E-17 3.4E-22 179.2 8.8 139 1053-1202 66-216 (253)
25 3nh6_A ATP-binding cassette SU 99.7 1E-17 3.6E-22 182.8 9.0 141 1048-1204 123-278 (306)
26 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1.6E-17 5.3E-22 160.6 8.7 92 1100-1203 54-145 (148)
27 2ixe_A Antigen peptide transpo 99.7 2E-17 6.9E-22 178.8 9.3 143 1050-1203 90-245 (271)
28 2ff7_A Alpha-hemolysin translo 99.7 2.3E-17 7.9E-22 175.9 9.3 139 1049-1203 79-232 (247)
29 2ihy_A ABC transporter, ATP-bi 99.7 5.7E-18 2E-22 183.5 3.8 142 1050-1202 94-251 (279)
30 2ghi_A Transport protein; mult 99.7 3.2E-17 1.1E-21 176.3 7.8 137 1050-1202 90-241 (260)
31 2pjz_A Hypothetical protein ST 99.7 4.4E-17 1.5E-21 174.7 7.3 134 1054-1202 75-214 (263)
32 1mv5_A LMRA, multidrug resista 99.7 6.3E-17 2.2E-21 172.6 7.1 136 1052-1202 75-225 (243)
33 1sgw_A Putative ABC transporte 99.6 3.8E-17 1.3E-21 169.2 4.5 125 1052-1187 77-206 (214)
34 2d2e_A SUFC protein; ABC-ATPas 99.6 1.5E-16 5E-21 170.4 7.4 134 1055-1199 82-229 (250)
35 2zu0_C Probable ATP-dependent 99.6 2E-16 6.9E-21 170.8 7.8 106 1085-1201 142-252 (267)
36 3gd7_A Fusion complex of cysti 99.6 1.1E-16 3.7E-21 180.5 4.3 139 1049-1204 90-243 (390)
37 2cbz_A Multidrug resistance-as 99.6 3.1E-16 1.1E-20 166.2 5.6 94 1099-1202 123-216 (237)
38 2yl4_A ATP-binding cassette SU 99.6 3.2E-15 1.1E-19 182.0 11.7 142 1049-1203 414-570 (595)
39 3qf4_A ABC transporter, ATP-bi 99.6 2.8E-15 9.7E-20 181.4 10.9 143 1048-1203 412-566 (587)
40 3b5x_A Lipid A export ATP-bind 99.6 3.2E-15 1.1E-19 181.4 10.3 141 1049-1204 413-568 (582)
41 4a82_A Cystic fibrosis transme 99.6 2.9E-15 9.9E-20 181.4 9.8 141 1048-1204 410-565 (578)
42 2pze_A Cystic fibrosis transme 99.6 1.3E-15 4.5E-20 160.7 5.6 90 1101-1203 128-218 (229)
43 3qf4_B Uncharacterized ABC tra 99.6 2.9E-15 1E-19 181.9 9.0 141 1048-1204 424-579 (598)
44 1w1w_A Structural maintenance 99.6 5.2E-15 1.8E-19 173.2 10.7 186 1004-1207 229-425 (430)
45 3b60_A Lipid A export ATP-bind 99.5 3.6E-15 1.2E-19 181.0 8.6 142 1048-1204 412-568 (582)
46 3j16_B RLI1P; ribosome recycli 99.5 3.6E-15 1.2E-19 178.6 7.9 109 1086-1204 448-560 (608)
47 3ozx_A RNAse L inhibitor; ATP 99.5 4E-15 1.4E-19 176.3 8.2 93 1087-1189 367-461 (538)
48 2bbs_A Cystic fibrosis transme 99.5 6.1E-15 2.1E-19 160.3 5.6 89 1101-1202 157-246 (290)
49 3bk7_A ABC transporter ATP-bin 99.5 2E-14 6.8E-19 172.7 8.5 108 1086-1203 452-563 (607)
50 1yqt_A RNAse L inhibitor; ATP- 99.5 1.4E-14 4.7E-19 172.5 7.1 106 1088-1203 384-493 (538)
51 3qkt_A DNA double-strand break 99.5 2.5E-14 8.6E-19 161.3 8.7 93 1099-1203 244-336 (339)
52 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 2.9E-14 9.9E-19 161.7 8.1 89 1099-1193 275-363 (365)
53 1yqt_A RNAse L inhibitor; ATP- 99.5 4.6E-14 1.6E-18 168.0 9.0 93 1085-1188 138-232 (538)
54 3bk7_A ABC transporter ATP-bin 99.5 5.3E-14 1.8E-18 169.0 9.1 93 1085-1188 208-302 (607)
55 4ad8_A DNA repair protein RECN 99.5 1.7E-12 5.8E-17 155.3 21.8 79 1098-1189 391-472 (517)
56 3ux8_A Excinuclease ABC, A sub 99.5 5.6E-14 1.9E-18 173.7 8.5 103 1089-1203 185-298 (670)
57 3ozx_A RNAse L inhibitor; ATP 99.4 1.3E-13 4.4E-18 163.4 9.8 91 1086-1188 119-211 (538)
58 3j16_B RLI1P; ribosome recycli 99.4 1.3E-13 4.5E-18 165.0 9.6 93 1085-1188 201-295 (608)
59 3ux8_A Excinuclease ABC, A sub 99.4 1.3E-13 4.3E-18 170.6 8.8 104 1088-1203 525-640 (670)
60 3pih_A Uvrabc system protein A 99.4 1.5E-13 5.1E-18 170.3 8.7 106 1088-1205 787-904 (916)
61 2iw3_A Elongation factor 3A; a 99.4 8.6E-14 3E-18 172.2 6.3 100 1085-1198 879-982 (986)
62 2iw3_A Elongation factor 3A; a 99.4 3.2E-13 1.1E-17 167.2 10.2 104 1084-1201 526-633 (986)
63 3g5u_A MCG1178, multidrug resi 99.4 1.7E-13 5.9E-18 180.0 8.3 144 1047-1203 458-613 (1284)
64 3g5u_A MCG1178, multidrug resi 99.4 1.4E-13 4.7E-18 181.0 6.6 143 1048-1204 1102-1259(1284)
65 3pih_A Uvrabc system protein A 99.4 3E-13 1E-17 167.6 9.3 103 1089-1203 447-560 (916)
66 4f4c_A Multidrug resistance pr 99.4 1E-13 3.4E-18 182.7 5.1 146 1046-1205 1146-1306(1321)
67 2vf7_A UVRA2, excinuclease ABC 99.4 2.8E-13 9.7E-18 166.4 7.7 107 1086-1204 710-828 (842)
68 2r6f_A Excinuclease ABC subuni 99.4 4.1E-13 1.4E-17 164.5 8.2 105 1087-1203 826-942 (972)
69 3auy_A DNA double-strand break 99.4 6E-13 2.1E-17 152.1 8.8 90 1101-1203 278-368 (371)
70 4f4c_A Multidrug resistance pr 99.4 2.5E-13 8.7E-18 178.9 6.4 142 1047-1204 486-642 (1321)
71 2ygr_A Uvrabc system protein A 99.4 6.2E-13 2.1E-17 163.6 8.7 104 1088-1203 845-960 (993)
72 4aby_A DNA repair protein RECN 99.3 4.6E-12 1.6E-16 148.3 14.9 78 1104-1194 296-379 (415)
73 2r6f_A Excinuclease ABC subuni 99.3 1.1E-12 3.6E-17 160.9 8.5 102 1090-1203 488-600 (972)
74 1e69_A Chromosome segregation 99.3 2.4E-12 8.4E-17 144.0 8.6 89 1100-1207 216-308 (322)
75 2ygr_A Uvrabc system protein A 99.3 1.3E-12 4.6E-17 160.7 6.6 92 1099-1202 517-616 (993)
76 2vf7_A UVRA2, excinuclease ABC 99.3 3.8E-12 1.3E-16 156.4 8.4 93 1099-1203 375-475 (842)
77 2o5v_A DNA replication and rep 99.1 2.3E-10 7.8E-15 127.9 12.7 81 1103-1201 265-354 (359)
78 4gp7_A Metallophosphoesterase; 99.1 1.4E-11 4.8E-16 123.9 0.0 70 1099-1179 79-164 (171)
79 1ye8_A Protein THEP1, hypothet 99.0 1E-10 3.4E-15 117.7 4.4 71 1099-1183 72-152 (178)
80 2npi_A Protein CLP1; CLP1-PCF1 98.9 1.8E-10 6.1E-15 133.5 0.2 93 1091-1199 223-334 (460)
81 1c1g_A Tropomyosin; contractIl 98.7 4E-05 1.4E-09 83.8 36.9 9 941-949 270-278 (284)
82 1i84_S Smooth muscle myosin he 98.6 5.9E-08 2E-12 126.7 9.4 34 653-686 859-892 (1184)
83 3b85_A Phosphate starvation-in 98.5 5.9E-09 2E-13 107.4 -1.1 57 1107-1180 108-164 (208)
84 1tf7_A KAIC; homohexamer, hexa 98.4 2.8E-08 9.7E-13 118.9 0.6 80 1100-1191 350-444 (525)
85 3qks_A DNA double-strand break 98.3 1.1E-07 3.9E-12 97.9 2.4 87 18-106 106-193 (203)
86 1tq4_A IIGP1, interferon-induc 98.3 1.1E-07 3.7E-12 108.0 1.4 94 1086-1185 137-248 (413)
87 1i84_S Smooth muscle myosin he 98.3 8.5E-07 2.9E-11 115.8 9.2 73 886-967 1103-1175(1184)
88 3thx_A DNA mismatch repair pro 98.3 6.9E-07 2.4E-11 111.7 7.8 89 1102-1201 720-811 (934)
89 3thx_B DNA mismatch repair pro 98.1 1.6E-06 5.6E-11 107.9 6.6 72 1101-1184 733-805 (918)
90 2o8b_B DNA mismatch repair pro 98.0 5E-06 1.7E-10 105.5 6.8 80 1102-1193 850-930 (1022)
91 1znw_A Guanylate kinase, GMP k 97.9 8E-07 2.7E-11 92.3 -1.5 61 1123-1187 137-201 (207)
92 1cr0_A DNA primase/helicase; R 97.9 6.7E-06 2.3E-10 90.7 4.1 80 1102-1192 128-237 (296)
93 2pt7_A CAG-ALFA; ATPase, prote 97.8 1.1E-05 3.8E-10 89.5 5.6 67 1106-1191 225-291 (330)
94 2w0m_A SSO2452; RECA, SSPF, un 97.8 1.5E-05 5.2E-10 84.5 5.0 78 1103-1190 103-192 (235)
95 1ewq_A DNA mismatch repair pro 97.7 2.5E-05 8.5E-10 95.9 6.4 64 1103-1181 635-704 (765)
96 1z6g_A Guanylate kinase; struc 97.7 9.6E-07 3.3E-11 92.3 -5.9 85 1102-1192 121-212 (218)
97 1wb9_A DNA mismatch repair pro 97.6 3.9E-05 1.3E-09 94.8 5.7 82 1103-1196 669-751 (800)
98 1nlf_A Regulatory protein REPA 97.5 5.8E-05 2E-09 82.3 4.9 66 1100-1178 115-185 (279)
99 3na7_A HP0958; flagellar bioge 97.5 0.011 3.8E-07 62.4 21.6 73 701-774 62-134 (256)
100 2obl_A ESCN; ATPase, hydrolase 97.4 2.7E-05 9.2E-10 86.8 1.4 81 1099-1201 167-253 (347)
101 2ehv_A Hypothetical protein PH 97.4 2.6E-05 8.9E-10 83.7 0.9 59 1125-1188 133-206 (251)
102 3b9q_A Chloroplast SRP recepto 97.4 2.1E-05 7.3E-10 85.9 -0.1 53 1101-1173 202-256 (302)
103 2eyu_A Twitching motility prot 97.4 0.00022 7.4E-09 76.2 7.3 59 1116-1187 87-145 (261)
104 2cvh_A DNA repair and recombin 97.3 0.00011 3.7E-09 76.9 4.1 79 1102-1188 83-183 (220)
105 2og2_A Putative signal recogni 97.3 7.1E-05 2.4E-09 83.3 2.3 53 1101-1173 259-313 (359)
106 2dpy_A FLII, flagellum-specifi 97.3 5.3E-05 1.8E-09 87.2 1.2 83 1099-1203 254-344 (438)
107 2i3b_A HCR-ntpase, human cance 97.3 2.7E-05 9.1E-10 78.6 -1.3 78 1103-1194 83-167 (189)
108 3aez_A Pantothenate kinase; tr 97.2 1.8E-05 6E-10 87.0 -3.4 75 1085-1178 157-232 (312)
109 3sop_A Neuronal-specific septi 97.1 6E-05 2E-09 81.0 -0.3 57 1100-1175 95-151 (270)
110 1pzn_A RAD51, DNA repair and r 97.1 0.00019 6.6E-09 80.3 3.5 64 1105-1178 208-290 (349)
111 3na7_A HP0958; flagellar bioge 97.0 0.018 6.1E-07 60.9 17.7 14 1124-1137 224-237 (256)
112 3euj_A Chromosome partition pr 97.0 0.00033 1.1E-08 80.7 4.6 65 1100-1173 376-451 (483)
113 3qf7_A RAD50; ABC-ATPase, ATPa 96.9 0.0036 1.2E-07 70.5 11.7 62 18-79 107-169 (365)
114 4a74_A DNA repair and recombin 96.9 0.00027 9.4E-09 74.5 1.8 60 1125-1188 123-198 (231)
115 2v9p_A Replication protein E1; 96.8 1.2E-05 4.1E-10 87.2 -9.2 66 1101-1200 198-263 (305)
116 3jvv_A Twitching mobility prot 96.8 0.0015 5.3E-08 72.7 6.9 58 1117-1187 186-243 (356)
117 1tf7_A KAIC; homohexamer, hexa 96.5 0.001 3.5E-08 79.3 3.6 59 1126-1189 137-209 (525)
118 2qnr_A Septin-2, protein NEDD5 96.3 0.00047 1.6E-08 75.5 -1.0 58 1100-1175 110-168 (301)
119 3ec2_A DNA replication protein 96.2 0.0036 1.2E-07 62.8 5.2 45 1125-1174 98-143 (180)
120 4gkw_A Spindle assembly abnorm 96.2 0.53 1.8E-05 41.0 17.3 114 701-817 13-126 (167)
121 1l8d_A DNA double-strand break 96.1 0.035 1.2E-06 50.2 10.7 43 569-611 30-73 (112)
122 3vkg_A Dynein heavy chain, cyt 96.1 0.91 3.1E-05 63.9 29.1 185 82-269 1897-2083(3245)
123 2jeo_A Uridine-cytidine kinase 95.9 0.0016 5.6E-08 69.0 0.9 62 1099-1182 112-174 (245)
124 1pui_A ENGB, probable GTP-bind 95.7 0.0045 1.5E-07 63.8 3.3 51 1100-1156 146-197 (210)
125 3o0z_A RHO-associated protein 95.6 1.3 4.3E-05 41.9 18.6 71 652-722 7-78 (168)
126 3vkg_A Dynein heavy chain, cyt 95.4 2 6.7E-05 60.6 28.0 92 820-916 2010-2101(3245)
127 3asz_A Uridine kinase; cytidin 95.3 0.00019 6.4E-09 74.6 -9.2 69 1100-1174 86-161 (211)
128 3auy_A DNA double-strand break 95.3 0.029 9.8E-07 63.4 8.2 79 28-106 109-188 (371)
129 2v71_A Nuclear distribution pr 95.3 2.4 8.1E-05 41.2 21.9 48 803-850 49-96 (189)
130 2kjq_A DNAA-related protein; s 94.7 0.023 7.8E-07 54.6 4.3 44 1124-1173 80-124 (149)
131 1sxj_E Activator 1 40 kDa subu 94.6 0.023 7.7E-07 64.0 4.9 45 1125-1176 132-176 (354)
132 2v71_A Nuclear distribution pr 94.6 3.6 0.00012 39.9 21.4 63 190-252 92-154 (189)
133 1qhl_A Protein (cell division 94.5 0.0082 2.8E-07 62.0 0.7 69 24-93 147-220 (227)
134 2ewv_A Twitching motility prot 94.4 0.042 1.5E-06 61.8 6.4 59 1115-1186 197-255 (372)
135 3szr_A Interferon-induced GTP- 94.4 0.02 6.8E-07 69.1 3.8 49 1126-1177 145-199 (608)
136 1n0w_A DNA repair protein RAD5 94.0 0.02 7E-07 60.4 2.7 49 1126-1178 118-178 (243)
137 3o0z_A RHO-associated protein 94.0 4.2 0.00014 38.3 19.6 51 794-844 32-82 (168)
138 1lw7_A Transcriptional regulat 93.8 0.026 8.7E-07 63.7 3.0 75 1103-1188 258-342 (365)
139 2dfs_A Myosin-5A; myosin-V, in 93.7 0.78 2.7E-05 58.6 16.5 57 781-837 962-1018(1080)
140 2bdt_A BH3686; alpha-beta prot 93.5 0.0032 1.1E-07 63.7 -4.7 83 1105-1198 96-179 (189)
141 1rj9_A FTSY, signal recognitio 92.4 0.032 1.1E-06 60.7 1.0 55 1105-1176 204-260 (304)
142 2qag_C Septin-7; cell cycle, c 92.3 0.029 9.8E-07 63.8 0.6 57 1103-1175 118-178 (418)
143 2efr_A General control protein 91.8 8.5 0.00029 36.1 22.8 38 117-154 26-63 (155)
144 2efr_A General control protein 91.1 10 0.00035 35.6 23.2 39 879-917 78-116 (155)
145 1odf_A YGR205W, hypothetical 3 90.8 0.014 4.9E-07 63.0 -3.9 37 1101-1143 132-168 (290)
146 2bbw_A Adenylate kinase 4, AK4 89.6 0.041 1.4E-06 58.1 -1.6 32 1125-1156 162-197 (246)
147 3ghg_A Fibrinogen alpha chain; 89.5 0.88 3E-05 50.5 8.6 16 936-951 176-191 (562)
148 3lda_A DNA repair protein RAD5 89.4 0.19 6.6E-06 56.7 3.7 45 1126-1174 272-328 (400)
149 3u1c_A Tropomyosin alpha-1 cha 88.8 11 0.00038 32.7 13.5 10 860-869 87-96 (101)
150 2xau_A PRE-mRNA-splicing facto 88.5 0.22 7.7E-06 61.7 3.7 68 1102-1181 189-259 (773)
151 2zr9_A Protein RECA, recombina 88.4 0.4 1.4E-05 53.2 5.3 56 1119-1175 129-199 (349)
152 2px0_A Flagellar biosynthesis 87.9 0.55 1.9E-05 50.7 5.9 72 1117-1195 174-247 (296)
153 1nij_A Hypothetical protein YJ 87.6 0.1 3.4E-06 57.4 -0.2 55 1103-1180 141-195 (318)
154 2dr3_A UPF0273 protein PH0284; 87.3 0.47 1.6E-05 49.8 4.9 47 1126-1176 127-175 (247)
155 1deq_A Fibrinogen (alpha chain 86.6 15 0.00053 39.2 15.5 6 56-61 34-39 (390)
156 2r6a_A DNAB helicase, replicat 86.2 0.3 1E-05 56.7 2.8 78 1102-1191 294-400 (454)
157 3oja_B Anopheles plasmodium-re 86.2 5.1 0.00017 48.2 13.9 23 884-906 557-579 (597)
158 1deq_A Fibrinogen (alpha chain 86.0 19 0.00066 38.5 15.8 23 893-915 135-157 (390)
159 3u59_A Tropomyosin beta chain; 85.8 16 0.00053 31.7 12.9 11 859-869 86-96 (101)
160 4gkw_A Spindle assembly abnorm 85.8 18 0.0006 31.8 18.4 14 775-788 63-76 (167)
161 3ol1_A Vimentin; structural ge 85.6 19 0.00065 32.3 13.7 28 738-765 21-48 (119)
162 1udx_A The GTP-binding protein 84.8 0.32 1.1E-05 55.2 2.0 67 1100-1181 249-316 (416)
163 3oja_B Anopheles plasmodium-re 84.6 14 0.00048 44.2 16.8 33 884-916 543-575 (597)
164 2ce7_A Cell division protein F 84.1 0.91 3.1E-05 52.4 5.5 61 1117-1178 98-168 (476)
165 3tnu_A Keratin, type I cytoske 83.6 17 0.00057 33.3 12.8 28 811-838 32-59 (131)
166 3ghg_A Fibrinogen alpha chain; 83.5 30 0.001 38.6 16.5 14 251-264 175-188 (562)
167 2ocy_A RAB guanine nucleotide 83.5 29 0.00099 32.4 19.0 24 889-912 119-142 (154)
168 1s96_A Guanylate kinase, GMP k 83.2 1.2 4.2E-05 45.5 5.5 41 1125-1179 105-145 (219)
169 1f2t_A RAD50 ABC-ATPase; DNA d 82.8 0.22 7.5E-06 47.6 -0.3 38 21-60 109-147 (149)
170 1ls1_A Signal recognition part 82.5 2.3 8E-05 45.7 7.7 50 1117-1172 170-220 (295)
171 2b9c_A Striated-muscle alpha t 81.5 19 0.00066 33.5 12.3 52 204-255 84-135 (147)
172 2ius_A DNA translocase FTSK; n 80.8 0.11 3.7E-06 60.4 -4.0 70 1103-1175 268-343 (512)
173 2f1r_A Molybdopterin-guanine d 80.7 0.16 5.4E-06 49.8 -2.2 63 1087-1155 86-159 (171)
174 2jee_A YIIU; FTSZ, septum, coi 78.7 22 0.00074 29.0 9.9 26 793-818 10-35 (81)
175 4ad8_A DNA repair protein RECN 78.6 91 0.0031 36.2 20.3 47 48-95 149-197 (517)
176 2qag_B Septin-6, protein NEDD5 77.9 0.88 3E-05 51.4 2.4 55 1118-1176 167-221 (427)
177 2v4h_A NF-kappa-B essential mo 77.5 16 0.00056 31.4 9.3 27 732-758 26-52 (110)
178 3tnu_B Keratin, type II cytosk 77.4 42 0.0014 30.5 14.5 12 212-223 80-91 (129)
179 4h22_A Leucine-rich repeat fli 77.4 14 0.00047 31.5 8.8 30 159-188 11-40 (103)
180 3tnu_B Keratin, type II cytosk 77.4 42 0.0015 30.5 14.1 39 202-240 77-115 (129)
181 2v66_B Nuclear distribution pr 76.7 38 0.0013 29.6 15.0 21 830-850 23-43 (111)
182 3swk_A Vimentin; cytoskeleton, 76.6 13 0.00046 31.0 8.7 35 791-825 44-78 (86)
183 2ocy_A RAB guanine nucleotide 76.0 51 0.0017 30.7 19.3 27 890-916 113-139 (154)
184 3jsv_C NF-kappa-B essential mo 75.5 24 0.00083 29.5 9.6 74 759-832 10-83 (94)
185 2b9c_A Striated-muscle alpha t 74.9 54 0.0019 30.5 14.2 27 817-843 10-36 (147)
186 4a1f_A DNAB helicase, replicat 74.7 3.3 0.00011 45.2 5.8 56 1102-1172 108-164 (338)
187 3hnw_A Uncharacterized protein 72.9 43 0.0015 30.8 11.9 19 732-750 27-45 (138)
188 2e87_A Hypothetical protein PH 71.7 4.2 0.00014 45.2 5.9 61 1102-1175 230-293 (357)
189 1l8d_A DNA double-strand break 71.7 53 0.0018 28.9 12.6 67 704-771 29-98 (112)
190 3qkt_A DNA double-strand break 71.6 2.4 8.1E-05 46.8 3.8 57 30-88 119-175 (339)
191 1lw7_A Transcriptional regulat 71.1 2.5 8.6E-05 47.2 4.0 29 1103-1137 296-329 (365)
192 2zqm_A Prefoldin beta subunit 69.6 60 0.0021 28.8 12.8 36 202-237 72-107 (117)
193 2z4s_A Chromosomal replication 69.5 4.3 0.00015 46.5 5.6 44 1126-1174 193-237 (440)
194 1lvg_A Guanylate kinase, GMP k 69.2 0.52 1.8E-05 47.5 -2.1 55 1123-1177 120-177 (198)
195 1fnn_A CDC6P, cell division co 68.5 3.1 0.00011 46.8 4.1 56 1126-1184 124-179 (389)
196 2e7s_A RAB guanine nucleotide 67.0 9.5 0.00032 34.5 5.8 24 888-911 106-129 (135)
197 3kta_A Chromosome segregation 66.3 1.3 4.5E-05 43.7 0.3 56 28-87 124-180 (182)
198 1x79_B RAB GTPase binding effe 66.1 59 0.002 28.4 10.4 22 825-846 60-81 (112)
199 1zp6_A Hypothetical protein AT 66.1 1.4 4.9E-05 43.8 0.5 40 1102-1155 108-147 (191)
200 1vma_A Cell division protein F 65.9 4.9 0.00017 43.3 4.7 45 1102-1155 164-211 (306)
201 1oix_A RAS-related protein RAB 65.3 4.3 0.00015 40.3 3.9 37 1117-1155 153-189 (191)
202 1ni3_A YCHF GTPase, YCHF GTP-b 64.8 0.26 9E-06 55.2 -5.8 64 1127-1196 139-206 (392)
203 1fxk_A Prefoldin; archaeal pro 64.6 71 0.0024 27.7 11.6 32 202-233 67-98 (107)
204 2eqb_B RAB guanine nucleotide 64.5 65 0.0022 27.3 13.1 20 704-723 45-64 (97)
205 1m1j_B Fibrinogen beta chain; 63.4 1.2E+02 0.004 34.2 15.2 12 903-914 179-190 (464)
206 2zqm_A Prefoldin beta subunit 60.5 63 0.0022 28.6 10.5 30 158-187 14-43 (117)
207 2jee_A YIIU; FTSZ, septum, coi 60.4 69 0.0023 26.2 11.9 16 240-255 53-68 (81)
208 4h22_A Leucine-rich repeat fli 60.2 35 0.0012 29.1 7.7 60 199-265 29-88 (103)
209 3cvf_A Homer-3, homer protein 60.0 26 0.00087 28.5 6.6 17 834-850 44-60 (79)
210 3mq7_A Bone marrow stromal ant 58.3 93 0.0032 27.0 12.0 26 757-782 31-56 (121)
211 3i00_A HIP-I, huntingtin-inter 58.2 93 0.0032 27.7 10.6 42 738-782 16-57 (120)
212 3cve_A Homer protein homolog 1 58.2 64 0.0022 25.7 8.4 17 834-850 38-54 (72)
213 1fxk_A Prefoldin; archaeal pro 57.5 74 0.0025 27.6 10.2 24 159-182 10-33 (107)
214 2eqb_B RAB guanine nucleotide 56.2 93 0.0032 26.4 13.9 25 732-756 7-31 (97)
215 3q8t_A Beclin-1; autophagy, AT 54.7 1E+02 0.0034 26.3 13.2 9 209-217 62-70 (96)
216 3b9p_A CG5977-PA, isoform A; A 54.6 13 0.00043 39.9 5.6 26 1117-1142 103-128 (297)
217 3nmd_A CGMP dependent protein 51.4 42 0.0014 26.7 6.3 25 196-220 22-46 (72)
218 2ap3_A Conserved hypothetical 50.9 1.9E+02 0.0064 28.3 16.2 53 68-121 51-103 (199)
219 3a7p_A Autophagy protein 16; c 49.1 1.2E+02 0.0041 28.0 9.9 15 826-840 112-126 (152)
220 3r6n_A Desmoplakin; spectrin r 49.1 3.3E+02 0.011 30.6 26.6 34 922-955 192-225 (450)
221 2f9l_A RAB11B, member RAS onco 47.9 12 0.00042 37.0 3.9 39 1118-1158 130-168 (199)
222 1x8y_A Lamin A/C; structural p 47.6 1.2E+02 0.0041 25.2 9.2 18 209-226 30-47 (86)
223 3oja_A Leucine-rich immune mol 47.5 3.6E+02 0.012 30.7 17.6 49 198-246 412-460 (487)
224 3nmd_A CGMP dependent protein 47.0 85 0.0029 24.9 7.4 31 395-425 37-67 (72)
225 2qby_A CDC6 homolog 1, cell di 46.6 8.7 0.0003 42.9 2.7 57 1126-1184 127-183 (386)
226 3bh0_A DNAB-like replicative h 44.2 23 0.00077 38.3 5.5 54 1104-1172 134-189 (315)
227 2gza_A Type IV secretion syste 43.4 21 0.00073 39.4 5.2 60 1117-1189 242-301 (361)
228 1m1j_A Fibrinogen alpha subuni 41.0 4E+02 0.014 29.3 14.2 39 212-250 116-154 (491)
229 2oap_1 GSPE-2, type II secreti 40.6 0.31 1.1E-05 57.0 -10.8 59 1102-1183 399-459 (511)
230 1w1w_A Structural maintenance 40.3 7.4 0.00025 44.4 0.8 39 50-88 148-187 (430)
231 3uun_A Dystrophin; triple heli 40.2 1.8E+02 0.0063 25.2 10.5 49 669-717 6-54 (119)
232 3htk_A Structural maintenance 40.2 1.2E+02 0.0041 23.0 7.9 27 221-247 26-52 (60)
233 3h4m_A Proteasome-activating n 39.9 47 0.0016 34.9 7.2 60 1117-1177 100-169 (285)
234 3iox_A AGI/II, PA; alpha helix 38.2 4.7E+02 0.016 29.3 15.9 22 402-423 84-105 (497)
235 3oja_A Leucine-rich immune mol 38.1 3.5E+02 0.012 30.8 14.9 7 33-39 253-259 (487)
236 3qh9_A Liprin-beta-2; coiled-c 37.2 1.7E+02 0.0056 23.8 9.5 36 204-239 30-65 (81)
237 3i00_A HIP-I, huntingtin-inter 36.1 2E+02 0.007 25.5 9.2 43 745-790 16-58 (120)
238 2qm8_A GTPase/ATPase; G protei 36.1 16 0.00056 39.9 2.7 46 1102-1157 209-260 (337)
239 3e70_C DPA, signal recognition 35.7 18 0.00062 39.3 3.0 46 1119-1175 235-280 (328)
240 1cii_A Colicin IA; bacteriocin 35.6 4.8E+02 0.016 28.6 17.0 38 114-151 358-395 (602)
241 3uul_A Utrophin; spectrin repe 35.2 1.7E+02 0.0059 25.4 9.2 21 697-717 34-54 (118)
242 1x79_B RAB GTPase binding effe 35.2 2.3E+02 0.0078 24.8 11.9 31 203-233 66-96 (112)
243 1g5t_A COB(I)alamin adenosyltr 34.7 29 0.001 34.2 3.9 51 1118-1174 109-163 (196)
244 4b4t_L 26S protease subunit RP 34.6 76 0.0026 35.8 7.9 61 1117-1178 264-334 (437)
245 3efg_A Protein SLYX homolog; x 34.4 97 0.0033 25.2 6.3 36 195-230 9-44 (78)
246 2xdj_A Uncharacterized protein 33.9 36 0.0012 28.1 3.7 44 967-1011 24-67 (83)
247 3uul_A Utrophin; spectrin repe 33.8 2.3E+02 0.008 24.5 14.0 73 782-854 36-108 (118)
248 3cvf_A Homer-3, homer protein 33.6 1.9E+02 0.0066 23.5 9.5 45 207-251 13-57 (79)
249 1x8y_A Lamin A/C; structural p 33.4 2.1E+02 0.0071 23.7 10.2 42 204-245 32-73 (86)
250 3viq_B Mating-type switching p 33.2 1.6E+02 0.0056 24.2 7.3 42 974-1015 5-46 (85)
251 1ik9_A DNA repair protein XRCC 32.6 3.1E+02 0.011 27.2 11.1 43 743-785 152-195 (213)
252 1t3j_A Mitofusin 1; coiled coi 32.1 2.3E+02 0.008 23.9 9.4 49 85-133 44-92 (96)
253 3k1j_A LON protease, ATP-depen 32.0 13 0.00043 44.7 1.0 46 1102-1154 182-227 (604)
254 3mq7_A Bone marrow stromal ant 32.0 2.5E+02 0.0087 24.4 10.3 10 178-187 53-62 (121)
255 1njg_A DNA polymerase III subu 31.8 27 0.00093 35.4 3.5 43 1126-1175 125-167 (250)
256 1deb_A APC protein, adenomatou 31.1 1.5E+02 0.0051 21.4 7.3 42 741-782 7-48 (54)
257 3lnc_A Guanylate kinase, GMP k 30.7 5.9 0.0002 40.7 -1.9 70 1124-1193 145-214 (231)
258 2eyu_A Twitching motility prot 30.3 0.22 7.6E-06 52.7 -13.1 33 1103-1143 172-206 (261)
259 3u61_B DNA polymerase accessor 30.1 50 0.0017 35.6 5.4 44 1126-1175 104-147 (324)
260 1l8q_A Chromosomal replication 29.7 33 0.0011 37.1 3.9 43 1126-1173 97-140 (324)
261 1m1j_C Fibrinogen gamma chain; 29.5 6.1E+02 0.021 28.0 14.5 14 804-817 120-133 (409)
262 2ke4_A CDC42-interacting prote 29.1 2.7E+02 0.0092 23.7 9.0 65 619-685 25-89 (98)
263 2lw1_A ABC transporter ATP-bin 28.4 2.2E+02 0.0075 23.7 7.9 58 399-456 23-80 (89)
264 3uux_B Mitochondrial division 27.6 4.5E+02 0.016 26.3 10.9 30 731-760 150-179 (242)
265 1go4_E MAD1 (mitotic arrest de 26.8 6.7 0.00023 33.5 -1.8 28 738-765 13-40 (100)
266 1lq7_A Alpha3W; three helix bu 26.5 1.8E+02 0.0062 20.9 6.2 42 708-750 4-45 (67)
267 2lw1_A ABC transporter ATP-bin 26.4 2.8E+02 0.0095 23.0 8.7 27 930-956 23-49 (89)
268 1jcn_A Inosine monophosphate d 26.4 2.7 9.4E-05 49.3 -6.1 63 1122-1194 28-92 (514)
269 3szr_A Interferon-induced GTP- 25.7 50 0.0017 39.3 4.7 51 1117-1172 173-223 (608)
270 3iv1_A Tumor susceptibility ge 25.4 2.7E+02 0.0092 22.5 9.4 58 735-792 16-73 (78)
271 3sja_C Golgi to ER traffic pro 25.0 2.4E+02 0.0083 21.9 7.0 44 937-981 7-50 (65)
272 2yhs_A FTSY, cell division pro 24.3 58 0.002 37.3 4.5 74 1117-1201 400-477 (503)
273 2wq1_A General control protein 24.1 1.5E+02 0.005 19.4 4.2 24 121-144 2-25 (33)
274 2xnx_M M protein, M1-BC1; cell 24.1 1.5E+02 0.0052 27.0 6.2 49 793-841 84-132 (146)
275 1v5w_A DMC1, meiotic recombina 24.0 46 0.0016 36.3 3.7 48 1126-1177 218-277 (343)
276 3qne_A Seryl-tRNA synthetase, 23.7 2.1E+02 0.0071 32.5 8.9 20 743-762 39-58 (485)
277 3etw_A Adhesin A; antiparallel 23.5 3.9E+02 0.013 23.7 12.7 15 904-918 87-101 (119)
278 1m1j_B Fibrinogen beta chain; 23.3 8.2E+02 0.028 27.4 17.9 68 35-108 31-113 (464)
279 2lde_A Sarafotoxin-I3; endothe 23.2 14 0.00049 22.3 -0.3 9 46-54 10-18 (26)
280 2wuj_A Septum site-determining 23.1 51 0.0017 25.0 2.6 35 591-625 16-50 (57)
281 2avr_X Adhesion A; antiparalle 23.1 3.9E+02 0.013 23.6 12.7 13 890-902 80-92 (119)
282 3iox_A AGI/II, PA; alpha helix 23.0 8.3E+02 0.028 27.4 16.8 27 244-270 82-108 (497)
283 3c8u_A Fructokinase; YP_612366 22.9 2.4 8.3E-05 42.9 -6.6 30 1102-1137 110-140 (208)
284 1cii_A Colicin IA; bacteriocin 22.7 7.9E+02 0.027 27.0 19.1 54 730-783 335-388 (602)
285 2r8r_A Sensor protein; KDPD, P 22.4 41 0.0014 34.0 2.6 42 1126-1172 83-125 (228)
286 3kl4_A SRP54, signal recogniti 22.3 1.5E+02 0.005 33.4 7.4 38 1117-1154 169-209 (433)
287 3htk_A Structural maintenance 22.2 2.6E+02 0.0087 21.1 9.0 30 822-851 3-32 (60)
288 1edn_A Endothelin-1; signal po 22.0 20 0.00067 21.7 0.1 9 46-54 10-18 (26)
289 2ftc_D Mitochondrial ribosomal 21.9 1.7E+02 0.006 28.0 6.7 46 1104-1155 69-114 (175)
290 2pms_C Pneumococcal surface pr 21.8 4.3E+02 0.015 23.5 8.9 35 779-813 51-85 (125)
291 3swy_A Cyclic nucleotide-gated 21.7 2.3E+02 0.0078 20.4 7.2 35 229-263 6-40 (46)
292 2ewv_A Twitching motility prot 21.4 0.45 1.5E-05 53.3 -13.5 33 1103-1143 283-317 (372)
293 3efg_A Protein SLYX homolog; x 21.3 3.1E+02 0.011 22.2 7.1 37 215-251 15-51 (78)
294 3co5_A Putative two-component 21.2 1.3E+02 0.0046 27.4 5.9 41 1126-1172 74-114 (143)
295 1u94_A RECA protein, recombina 21.0 94 0.0032 34.0 5.4 49 1126-1175 140-201 (356)
296 4b4t_K 26S protease regulatory 20.7 1.6E+02 0.0055 33.0 7.3 61 1117-1178 255-325 (428)
297 1p9r_A General secretion pathw 20.6 6.6 0.00022 44.4 -4.2 32 1093-1132 283-314 (418)
298 3uun_A Dystrophin; triple heli 20.6 4.1E+02 0.014 22.8 16.0 70 783-852 37-106 (119)
299 3sjb_C Golgi to ER traffic pro 20.4 3.5E+02 0.012 22.7 7.2 54 935-989 22-75 (93)
300 4b4t_J 26S protease regulatory 20.4 1.5E+02 0.0051 32.9 6.8 61 1117-1178 231-301 (405)
301 1wle_A Seryl-tRNA synthetase; 20.2 6.5E+02 0.022 28.6 12.3 28 740-767 73-100 (501)
302 3llm_A ATP-dependent RNA helic 20.1 1.1E+02 0.0037 31.0 5.4 48 1124-1177 173-223 (235)
303 3ghg_B Fibrinogen beta chain; 20.0 7E+02 0.024 27.8 11.8 109 799-907 84-192 (461)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.80 E-value=4.3e-20 Score=204.54 Aligned_cols=146 Identities=17% Similarity=0.217 Sum_probs=118.5
Q ss_pred HHHHHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHH
Q 000957 1050 EINKIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la 1121 (1209)
.+++.++++||.+ |+ .+..+++.+.....+ ......+..++..+|..+ ..+++.||||||| |++||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQ------RVaIA 175 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ------RVAIA 175 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHH------HHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH------HHHHH
Confidence 3456789999986 33 377888776432221 122334566777788765 3567899999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
+||+.+|++|+|||||++||+.++..|.++|.++. ...|.|||+||||++++..+||++++++.|+|+..|++..+
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~----~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDIN----RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH----HHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH----HhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999983 33589999999999999999999999999999999988777
Q ss_pred cccc
Q 000957 1202 IEAQ 1205 (1209)
Q Consensus 1202 ~~~~ 1205 (1209)
+..+
T Consensus 252 ~~~p 255 (366)
T 3tui_C 252 FSHP 255 (366)
T ss_dssp HSSC
T ss_pred HhCC
Confidence 6543
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.77 E-value=9.6e-20 Score=196.45 Aligned_cols=146 Identities=21% Similarity=0.234 Sum_probs=117.0
Q ss_pred HHHHHHHhhhcccc----cCCcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1049 EEINKIIRELWQQT----YRGQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
..+.+.++++||.+ |..+..+++.+.....+ ......+..++..++... ...++.||||||| |++
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQ------Rv~ 153 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKK------RVA 153 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH------HHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHH------HHH
Confidence 34566788999864 45677888776432221 112234556777777655 3566899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||+||+.+|++|||||||+|||+.++..|.++|.++.. ..|.|||+||||++++..+||+++++..|+|+..|++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~----~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~ 229 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK----ELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH----HHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHh----hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999998831 23789999999999999999999999999999999877
Q ss_pred ccccc
Q 000957 1200 SIIEA 1204 (1209)
Q Consensus 1200 s~~~~ 1204 (1209)
.++..
T Consensus 230 ~~~~~ 234 (275)
T 3gfo_A 230 EVFAE 234 (275)
T ss_dssp HHTHH
T ss_pred HHhcC
Confidence 76543
No 3
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.77 E-value=5e-19 Score=190.60 Aligned_cols=146 Identities=20% Similarity=0.202 Sum_probs=116.2
Q ss_pred HHHHHHHhhhcccc---cCCcchhhhhhccCCcc-ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1049 EEINKIIRELWQQT---YRGQDIDYIRIHSDSEG-AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
..+.+.++++||.. ++.+..+++.+...... ......+..++..++... ...++.|||||+| |++||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~Q------Rv~iAr 154 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQ------RVQLAR 154 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHH------HHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHH------HHHHHH
Confidence 34556678888865 35577788776543321 222344566777777654 3456899999999 999999
Q ss_pred Hhcc------CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1123 TFCL------NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1123 ~~~~------~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
||++ +|++|||||||+|||+.++..|.++|..+. ...|.+||+||||++++..+||++++++.|+|...|
T Consensus 155 aL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~----~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 155 VLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT----RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH----HHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH----HcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999 999999999999999999999999999883 234679999999999999999999999999999999
Q ss_pred Cccccccc
Q 000957 1197 HQHSIIEA 1204 (1209)
Q Consensus 1197 ~~~s~~~~ 1204 (1209)
++..++..
T Consensus 231 ~~~~~~~~ 238 (266)
T 4g1u_C 231 TPEEVLNA 238 (266)
T ss_dssp CHHHHCCH
T ss_pred CHHHHhCc
Confidence 87766543
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.77 E-value=5.8e-19 Score=189.26 Aligned_cols=144 Identities=17% Similarity=0.325 Sum_probs=113.9
Q ss_pred HHHHHHHhhhcccc--cCC-cchhhhhhcc-CCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHH
Q 000957 1049 EEINKIIRELWQQT--YRG-QDIDYIRIHS-DSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~-~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
..+++.++++||.+ |+. +..+++.+.. ...+ ......+..++..++... ...++.||||||| |++
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQ------Rv~ 169 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQ------RVA 169 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHH------HHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHH------HHH
Confidence 34566788999975 343 6777776632 1111 111234556777777654 3456899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||+||+.+|++|||||||+|||+.++..|.++|.++. . .|.+||+||||++++..+||+++++..|+|...|++.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~----~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA----N-EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH----H-TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----h-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999882 2 3889999999999999999999999999999888766
Q ss_pred cccc
Q 000957 1200 SIIE 1203 (1209)
Q Consensus 1200 s~~~ 1203 (1209)
.++.
T Consensus 245 ~~~~ 248 (263)
T 2olj_A 245 DLFD 248 (263)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.77 E-value=4.5e-19 Score=190.96 Aligned_cols=143 Identities=17% Similarity=0.287 Sum_probs=113.3
Q ss_pred HHHHHHhhhcccc--cCC-cchhhhhhcc-CCcc---ccchhHHHHHHHHcCCccc---cccCCCChhhhhhhhHHHHHH
Q 000957 1050 EINKIIRELWQQT--YRG-QDIDYIRIHS-DSEG---AGTRSYSYKVLMQTGDAEL---EMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~-~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
.+.+.++++||.+ |+. +..+++.+.. ...+ ......+..++..++..+. ..++.|||||+| |++
T Consensus 90 ~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~q------Rv~ 163 (262)
T 1b0u_A 90 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQ------RVS 163 (262)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHH------HHH
T ss_pred HHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHH------HHH
Confidence 3456788999975 343 6777776632 1111 1112345567777776543 456899999999 999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcc
Q 000957 1120 LAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1120 la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1199 (1209)
||+||+.+|++|||||||+|||+.++..|.++|.++. . .|.+||+||||++++..+||+++++..|+|+..|++.
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~----~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 238 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA----E-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 238 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH----H-TTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----h-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999882 2 3889999999999999999999999999999988766
Q ss_pred cccc
Q 000957 1200 SIIE 1203 (1209)
Q Consensus 1200 s~~~ 1203 (1209)
.++.
T Consensus 239 ~~~~ 242 (262)
T 1b0u_A 239 QVFG 242 (262)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.76 E-value=8.4e-19 Score=194.37 Aligned_cols=143 Identities=20% Similarity=0.190 Sum_probs=116.2
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+ .+..+++.+.....+ ......+..++..++... ..+++.||||||| |+|||+||
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~Q------RValArAL 153 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQ------RAALARAL 153 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHH------HHHHHHHH
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH------HHHHHHHH
Confidence 4578899976 44 378888877433221 122335566777777765 3567899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||+|||+.++..+...|..+. ...|.|+|+||||+.++..+||++++++.|+|...|++..++..
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~----~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAAL----RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH----HHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999998888774 23589999999999999999999999999999999988776654
Q ss_pred c
Q 000957 1205 Q 1205 (1209)
Q Consensus 1205 ~ 1205 (1209)
+
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 3
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.76 E-value=7.8e-19 Score=185.99 Aligned_cols=137 Identities=23% Similarity=0.269 Sum_probs=106.5
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCc------cccchhHHHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHH
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSE------GAGTRSYSYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+.++++||.+ |++ +..+++.+..... .......+..++..++..+ ..+++.|||||+| |++|
T Consensus 83 ~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~Q------Rv~i 156 (235)
T 3tif_A 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ------RVAI 156 (235)
T ss_dssp HHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHH------HHHH
T ss_pred ccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHH------HHHH
Confidence 4588999986 344 7778776532111 1111234455666777654 3467899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|+||+.+|++|||||||+|||+.+...|.++|.++. ...|.+||+||||++++ .+||++++++.|+|...++...
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~----~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN----EEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH----HHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999883 22378999999999965 7999999999999998875443
No 8
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.75 E-value=9e-19 Score=185.46 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=110.7
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCccc-cchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEGA-GTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
+.++++||.+ |++ +..+++.+.....+. .....+..++..++..+ ...++.||||||| |++||+||+.
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq------Rv~lAral~~ 143 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQ------RVALARALVI 143 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHH------HHHHHHHHTT
T ss_pred CcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHH------HHHHHHHHHc
Confidence 3467888875 443 677777664322211 11234556677777654 3456899999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+|++|+|||||+|||+.++..+.++|.++. ...|.+||+||||++++..+||+++++..|+|...|++..++.
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~----~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQ----REFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHH----HHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999883 2237899999999999999999999999999998887665543
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.74 E-value=9.6e-19 Score=195.21 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=115.0
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+. +..+++.+.....+ ......+..++..++... ..+++.|||||+| |++||+||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQ------RVaiArAL 148 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ------RVAIGRTL 148 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHH------HHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHH------HHHHHHHH
Confidence 3478899986 443 77888876432211 122335566777777655 3567899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||++||+..+..+...|..+. ...|.++|+||||+.++..+||++.+++.|+|...|++..++..
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~----~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLH----KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH----HHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH----HhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999999999983 23488999999999999999999999999999999987776543
No 10
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.73 E-value=1.9e-18 Score=191.96 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=115.3
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
.+.++++||.+ |+. +..+++.+.....+......+..++..++... ..+++.|||||+| |+|||+||+.
T Consensus 71 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~Q------RvalAraL~~ 144 (348)
T 3d31_A 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQ------RVALARALVT 144 (348)
T ss_dssp HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHH------HHHHHHHTTS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHH------HHHHHHHHHc
Confidence 46688999985 554 77888776322111111144566777777654 3567899999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCcccccccc
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~ 1205 (1209)
+|++|+|||||++||+.++..+...|+.+. ...|.++|+||||..++..+||++++++.|+|...|++..++..+
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~----~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLH----KKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHH----HHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999883 234789999999999999999999999999999988777765543
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.73 E-value=2.5e-18 Score=180.84 Aligned_cols=133 Identities=19% Similarity=0.224 Sum_probs=105.0
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+ .+..+++.+.....+ ......+..++..++..+ ...++.||||||| |++||+||
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q------rv~laral 155 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQ------RVAIARAL 155 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHH------HHHHHHHT
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH------HHHHHHHH
Confidence 5678898875 33 367777765321111 111234556777777654 3566899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCC
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDH 1197 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~ 1197 (1209)
+.+|++|+|||||+|||+.++..+.++|.++. . .|.+||+||||++++ .+||+++++..|++...|+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~----~-~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKIN----E-GGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH----H-TTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----H-CCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999882 2 388999999999998 7999999999999988764
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.73 E-value=2.1e-18 Score=184.34 Aligned_cols=141 Identities=22% Similarity=0.288 Sum_probs=111.0
Q ss_pred HHHHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHH
Q 000957 1051 INKIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAE 1122 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~ 1122 (1209)
+++.++++||.+ |++ +..+++.+.....+ ......+..++..++..+ ...++.||||||| |++||+
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~q------Rv~lAr 159 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVR------KLLIAR 159 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHH------HHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHH------HHHHHH
Confidence 455678888875 444 67777766322111 111234456677777654 3456899999999 999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
||+.+|++|+|||||+|||+.++..|.++|..+. ..|.+||+||||++++..+||+++++..|+|...|++..+.
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS-----QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH-----hCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999872 24789999999999999999999999999999887665543
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.73 E-value=2.7e-18 Score=191.33 Aligned_cols=142 Identities=16% Similarity=0.193 Sum_probs=115.4
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+. +..+++.+.....+ ......+..++..++..+ ..+++.|||||+| |+|||+||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~Q------RvalArAL 148 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQ------RVALARAL 148 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHH------HHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH------HHHHHHHH
Confidence 4578899975 443 78888877433221 112234566777888765 3567899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||++||+.++..+...|..+.+ ..|.++|+||||..++..+||++++++.|+|...|++..++..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~----~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ----ELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH----HHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH----hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998832 2478999999999999999999999999999998877766543
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.73 E-value=3e-18 Score=182.28 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=107.7
Q ss_pred HHhhhcccc--cCC-cchhhhhhccCCc--cccchhHHHHHHHHcC-Ccc--ccccCCCChhhhhhhhHHHHHHHHHHhc
Q 000957 1054 IIRELWQQT--YRG-QDIDYIRIHSDSE--GAGTRSYSYKVLMQTG-DAE--LEMRGRCSAGQKVLASLIIRLALAETFC 1125 (1209)
Q Consensus 1054 ~~~~~~~~~--~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~ 1125 (1209)
.++++||.+ |++ +..+++.+..... ..........++..++ ... ...++.|||||+| |++||+||+
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~q------rv~lAraL~ 155 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQ------MLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHH------HHHHHHHHT
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHH------HHHHHHHHH
Confidence 478888875 444 7788887643111 1111223445555553 332 3456899999999 999999999
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccc
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
.+|++|+|||||+|||+.++..|.+.|.++. ..|.+||+||||++++..+||+++++..|+|...|++..++
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKIN-----QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-----HTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999999999882 25789999999999999999999999999999887665544
No 15
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.72 E-value=6.8e-18 Score=179.61 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=112.4
Q ss_pred HHHHHHHhhhcccc--cC-CcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHH
Q 000957 1049 EEINKIIRELWQQT--YR-GQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAET 1123 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~ 1123 (1209)
..+++.++++||.+ |+ .+..+++.+...... . ...+..++..++..+ ...++.|||||+| |++||++
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q------rv~lAra 140 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT-R-TELLNDVAGALALDDKLGRSTNQLSGGEWQ------RVRLAAV 140 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTT-C-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHH------HHHHHHH
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhccCC-c-HHHHHHHHHHcCChhHhcCChhhCCHHHHH------HHHHHHH
Confidence 34566788999876 33 377788766421111 1 334556777777654 3456899999999 9999999
Q ss_pred hccCCC-------eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1124 FCLNCG-------ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1124 ~~~~~~-------~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|+.+|+ +|+|||||+|||+.++..|.++|..+. ..|.+||+||||++++..+||+++++..|+|...|
T Consensus 141 L~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 215 (249)
T 2qi9_C 141 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS-----QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215 (249)
T ss_dssp HHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999 999999999999999999999999872 23889999999999999999999999999999887
Q ss_pred Cccccc
Q 000957 1197 HQHSII 1202 (1209)
Q Consensus 1197 ~~~s~~ 1202 (1209)
++..++
T Consensus 216 ~~~~~~ 221 (249)
T 2qi9_C 216 RREEVL 221 (249)
T ss_dssp EHHHHS
T ss_pred CHHHHh
Confidence 655543
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.72 E-value=4.3e-18 Score=190.13 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=114.9
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+. +..+++.+.....+ ......+..++..++..+ ..+++.|||||+| |++||+||
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~Q------RvalAraL 155 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQ------RVALARAL 155 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHH------HHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH------HHHHHHHH
Confidence 4578899876 443 78888876433221 112234566777777655 3567899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||++||+.++..+...|+.+.+ ..|.++|+||||..++..+||++++++.|+|...|++..++..
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~----~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQS----RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH----HHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998832 2478999999999999999999999999999998877766543
No 17
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.72 E-value=3.2e-18 Score=170.12 Aligned_cols=142 Identities=21% Similarity=0.252 Sum_probs=101.2
Q ss_pred HHHhhhcHHHHHHHHhhhcccccCCcchhhhhhc-cCCccccchhHHHHHHHHcCCccccccCCCChhhhhhhhHHHHHH
Q 000957 1041 MRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIH-SDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLA 1119 (1209)
Q Consensus 1041 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~k~l~sl~ir~~ 1119 (1209)
...+...+..|+..|..+|+.+++|+....+.-. .++...|. .+...+++.....+..||||||+ |++
T Consensus 6 ~~~f~~~f~~i~~~f~~~f~~L~~~g~~~l~l~~~~~~~~~gl-----~i~~~~~~~~~~~~~~LSgGekq------r~a 74 (173)
T 3kta_B 6 KNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGL-----EIEAKPAGKDVKRIEAMSGGEKA------LTA 74 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCSSSGGGSCE-----EEEEETTSSSCCCGGGCCHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeeCCCCccccCc-----eEEecCCCccccccccCCHHHHH------HHH
Confidence 4455667799999999999999887654432111 11111111 01111233344556789999999 778
Q ss_pred HHHHhc----cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1120 LAETFC----LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1120 la~~~~----~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
||++|+ .|||+++|||||+|||+.++..|..+|..+ ..+.|+|||||+..++. .+++.++|.+.
T Consensus 75 la~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~------~~~~~~ivith~~~~~~------~ad~i~~v~~~ 142 (173)
T 3kta_B 75 LAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES------SKESQFIVITLRDVMMA------NADKIIGVSMR 142 (173)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH------TTTSEEEEECSCHHHHT------TCSEEEEEEEE
T ss_pred HHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh------ccCCEEEEEEecHHHHH------hCCEEEEEEec
Confidence 888775 568999999999999999999999999887 23579999999988765 68888888885
Q ss_pred CCccccccccc
Q 000957 1196 DHQHSIIEAQE 1206 (1209)
Q Consensus 1196 ~~~~s~~~~~~ 1206 (1209)
+ |.|.+...+
T Consensus 143 ~-g~s~~~~~~ 152 (173)
T 3kta_B 143 D-GVSKVVSLS 152 (173)
T ss_dssp T-TEEEEEECC
T ss_pred C-CEEEEEEEE
Confidence 4 666665544
No 18
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.72 E-value=2.9e-18 Score=185.38 Aligned_cols=142 Identities=20% Similarity=0.160 Sum_probs=112.6
Q ss_pred HHHHHhhhcccc----cCCcchhhhhhccCC-c-cccchhHHHHHHHHcCCc--c--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1051 INKIIRELWQQT----YRGQDIDYIRIHSDS-E-GAGTRSYSYKVLMQTGDA--E--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1051 i~~~~~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~--~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+++.++++||.+ +..+..+++.+.... . .......+..++..++.. + ...++.|||||+| |++|
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~q------Rv~l 149 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR------RVAI 149 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHH------HHHH
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHH------HHHH
Confidence 345578888863 356778888764321 1 112223456677788876 4 3556899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|++|+.+|++|+|||||+|||+.++..|.++|..+. . .|.+||+||||++++..+||+++++..|+|...|++..
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~----~-~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 224 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK----T-LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH----H-TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH----H-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999872 2 38899999999999999999999999999998876655
Q ss_pred ccc
Q 000957 1201 IIE 1203 (1209)
Q Consensus 1201 ~~~ 1203 (1209)
++.
T Consensus 225 ~~~ 227 (266)
T 2yz2_A 225 FLE 227 (266)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.72 E-value=4.3e-18 Score=189.04 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=113.6
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+ .+..+++.+..... .......+..++..++... ..+++.|||||+| |++||+||
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~Q------RvalArAL 160 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQ------RVALARAL 160 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHH------HHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHH------HHHHHHHH
Confidence 4578888875 44 37788876632211 1112234566777777755 3567899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||++||+.++..+...|..+.+ ..|.++|+||||..++..+||+++++..|+|...|++..++..
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~----~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD----EMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH----HHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH----hcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998832 2478999999999999999999999999999998877766543
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.72 E-value=3.4e-18 Score=184.01 Aligned_cols=139 Identities=12% Similarity=0.110 Sum_probs=110.1
Q ss_pred HHHHHhhhcccc--cC-CcchhhhhhccCC--cc--------------ccchhHHHHHHHHcCCcc--ccccCCCChhhh
Q 000957 1051 INKIIRELWQQT--YR-GQDIDYIRIHSDS--EG--------------AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQK 1109 (1209)
Q Consensus 1051 i~~~~~~~~~~~--~~-~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k 1109 (1209)
+.+.++++||.+ |+ .+..+++.+.... .+ ......+..++..++... ...++.||||||
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 159 (257)
T 1g6h_A 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQM 159 (257)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred HhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHH
Confidence 345678888875 33 4677777664321 01 111234556777777654 345689999999
Q ss_pred hhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcC
Q 000957 1110 VLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKY 1189 (1209)
Q Consensus 1110 ~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~ 1189 (1209)
| |++||+||+.+|++|+|||||+|||+.++..|.++|..+. ..|.+||+||||++++..+||+++++..
T Consensus 160 Q------rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~-----~~g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 160 K------LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-----AKGITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp H------HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-----HTTCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred H------HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-----HCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9 9999999999999999999999999999999999999882 2488999999999999999999999999
Q ss_pred cEEeecCCccc
Q 000957 1190 YRVAKDDHQHS 1200 (1209)
Q Consensus 1190 ~~v~~~~~~~s 1200 (1209)
|+|...|++..
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99998876655
No 21
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.72 E-value=4.4e-18 Score=190.59 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=111.9
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+ .+..+++.+.....+ ......+..++..++... ..+++.|||||+| |+|||+||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q------RvalArAL 156 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQ------RVAVARAI 156 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHH------HHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH------HHHHHHHH
Confidence 4578899875 44 378888877433221 111234566777787765 3567899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||++||+.++..+...|..+.+ ..|.++|+||||..++..+||++++++.|+|...|++..++..
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~----~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ----KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH----HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998832 2378999999999999999999999999999998877766543
No 22
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.72 E-value=3.6e-18 Score=190.56 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=113.8
Q ss_pred HHHhhhcccc--cCC-cchhhhhhccCCc---cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YRG-QDIDYIRIHSDSE---GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+. +..+++.+..... .......+..++..++..+ ..+++.|||||+| |+|||+||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q------RvalArAL 148 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQ------RVAIARAL 148 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHH------HHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHH------HHHHHHHH
Confidence 4578899975 443 7788887632211 1112234556777777654 3567899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||+|||+.++..+...|..+.+ ..|.++|+||||...+..+||++++++.|+|...|++..++..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~----~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK----ELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH----HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHH----hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998832 2478999999999999999999999999999998877766543
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.71 E-value=7.8e-18 Score=189.19 Aligned_cols=142 Identities=21% Similarity=0.213 Sum_probs=113.7
Q ss_pred HHHhhhcccc--cC-CcchhhhhhccCCcc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHh
Q 000957 1053 KIIRELWQQT--YR-GQDIDYIRIHSDSEG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETF 1124 (1209)
Q Consensus 1053 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~ 1124 (1209)
+.++++||.+ |+ .+..+++.+.....+ ......+..++..++..+ ..+++.|||||+| |+|||+||
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q------RvalArAL 154 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ------RVALGRAI 154 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHH------HHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHH------HHHHHHHH
Confidence 4578899975 44 477888776422111 112234556777777655 3567899999999 99999999
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccccccc
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 1204 (1209)
+.+|++|+|||||++||+.++..+...|+.+.+ ..|.++|+||||..++..+||++++++.|+|...|++..++..
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~----~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR----QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH----HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH----hcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998832 2478999999999999999999999999999998877766543
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.71 E-value=1e-17 Score=179.23 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=107.1
Q ss_pred HHHhhhcccc--c-CCcchhhhhhccCCc-------cccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHH
Q 000957 1053 KIIRELWQQT--Y-RGQDIDYIRIHSDSE-------GAGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLAL 1120 (1209)
Q Consensus 1053 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~l 1120 (1209)
+.++++||.+ | ..+..+++.+..... .......+..++..++..+ ...++.|||||+| |++|
T Consensus 66 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q------rv~l 139 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQ------LILI 139 (253)
T ss_dssp SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH------HHHH
T ss_pred ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHH------HHHH
Confidence 3467788865 3 457778776643111 1111233456677777654 3456899999999 9999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCccc
Q 000957 1121 AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1121 a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~~s 1200 (1209)
|+||+.+|++|+|||||+|||+.++..|.+.|..+. ...|.+||+||||++++..+||+++++..|+ ...|++..
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~----~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA----QSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHH----HTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----HhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHH
Confidence 999999999999999999999999999999999872 2338899999999999999999999999999 77665554
Q ss_pred cc
Q 000957 1201 II 1202 (1209)
Q Consensus 1201 ~~ 1202 (1209)
++
T Consensus 215 ~~ 216 (253)
T 2nq2_C 215 IL 216 (253)
T ss_dssp HC
T ss_pred Hh
Confidence 43
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.71 E-value=1e-17 Score=182.78 Aligned_cols=141 Identities=23% Similarity=0.237 Sum_probs=109.3
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc-------------ccccCCCChhhhhhh
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE-------------LEMRGRCSAGQKVLA 1112 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~lSgG~k~l~ 1112 (1209)
...+++.++++||.+ |+++..+++.+....... .....++...+..+ ......|||||||
T Consensus 123 ~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~---~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQ-- 197 (306)
T 3nh6_A 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN---DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQ-- 197 (306)
T ss_dssp HHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCH---HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHH--
T ss_pred HHHHhcceEEEecCCccCcccHHHHHHhhcccCCH---HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHH--
Confidence 456778899999987 678889988774322111 11222222222111 1233589999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
|++|||||+.+|++|||||||++||+.+...|.+.|..+. .+.|+|+|||++.++.. ||+++++..|+|
T Consensus 198 ----RvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~------~~~Tvi~itH~l~~~~~-aD~i~vl~~G~i 266 (306)
T 3nh6_A 198 ----RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC------ANRTTIVVAHRLSTVVN-ADQILVIKDGCI 266 (306)
T ss_dssp ----HHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH------TTSEEEEECCSHHHHHT-CSEEEEEETTEE
T ss_pred ----HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc------CCCEEEEEEcChHHHHc-CCEEEEEECCEE
Confidence 9999999999999999999999999999999999998872 36799999999999986 999999999999
Q ss_pred eecCCccccccc
Q 000957 1193 AKDDHQHSIIEA 1204 (1209)
Q Consensus 1193 ~~~~~~~s~~~~ 1204 (1209)
+..|+...++..
T Consensus 267 v~~G~~~el~~~ 278 (306)
T 3nh6_A 267 VERGRHEALLSR 278 (306)
T ss_dssp EEEECHHHHHHH
T ss_pred EEECCHHHHHhc
Confidence 999987766543
No 26
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.70 E-value=1.6e-17 Score=160.63 Aligned_cols=92 Identities=26% Similarity=0.365 Sum_probs=74.7
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
.++.|||||+++++|++++|||++|+.+|++++|||||+|||+.++..+...|..+ ...|.+||+||||..+ ..
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~~~~tiiivsH~~~~-~~ 127 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-----LKKIPQVILVSHDEEL-KD 127 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHT-----GGGSSEEEEEESCGGG-GG
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHH-----HccCCEEEEEEChHHH-HH
Confidence 45689999999999999999999999999999999999999999999999999887 2347899999999954 44
Q ss_pred hhhHhhhhcCcEEeecCCcccccc
Q 000957 1180 IGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
+| ++.+.+... +|.|.+.
T Consensus 128 ~~-----d~ii~l~~~-~g~s~~~ 145 (148)
T 1f2t_B 128 AA-----DHVIRISLE-NGSSKVE 145 (148)
T ss_dssp GC-----SEEEEEEEE-TTEEEEE
T ss_pred hC-----CEEEEEEcC-CCeEEEE
Confidence 44 444444333 3555543
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.69 E-value=2e-17 Score=178.83 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=107.4
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccc-cc------hhHHHHHHHHc--CCcc--ccccCCCChhhhhhhhHHH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGA-GT------RSYSYKVLMQT--GDAE--LEMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~--~~~~--~~~~~~lSgG~k~l~sl~i 1116 (1209)
.+++.++++||.+ |+++..+++.+....... .. ......++..+ +... ...++.|||||+|
T Consensus 90 ~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~Q------ 163 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQ------ 163 (271)
T ss_dssp HHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHH------
T ss_pred HHhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHH------
Confidence 4566788999875 567888888764321111 00 01112333333 2221 3456899999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++||+||+.+|++|||||||++||+.++..|.++|..+ ....|.+|||||||+.++.. ||+++++..|+|...|
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~----~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES----PEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHC----TTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH----HhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999876 22348899999999999874 9999999999999888
Q ss_pred Ccccccc
Q 000957 1197 HQHSIIE 1203 (1209)
Q Consensus 1197 ~~~s~~~ 1203 (1209)
+...++.
T Consensus 239 ~~~~l~~ 245 (271)
T 2ixe_A 239 THLQLME 245 (271)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 7665543
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.69 E-value=2.3e-17 Score=175.91 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=106.7
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc-------------ccccCCCChhhhhhhh
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE-------------LEMRGRCSAGQKVLAS 1113 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~lSgG~k~l~s 1113 (1209)
..+++.++++||.+ |+++..+++.+..... .......++..++..+ ...++.|||||||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q--- 152 (247)
T 2ff7_A 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGM---SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ--- 152 (247)
T ss_dssp HHHHHHEEEECSSCCCTTSBHHHHHTTTCTTC---CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHH---
T ss_pred HHHHhcEEEEeCCCccccccHHHHHhccCCCC---CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHH---
Confidence 34566789999975 5678888887642111 1122333444444322 1234689999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1114 LIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1114 l~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|++||+||+.+|++|+|||||++||+.++..|.++|..+ . .|.+|||||||+.++. .||+++++..|+|.
T Consensus 153 ---Rv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-----~-~g~tviivtH~~~~~~-~~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 153 ---RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-----C-KGRTVIIIAHRLSTVK-NADRIIVMEKGKIV 222 (247)
T ss_dssp ---HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-----H-TTSEEEEECSSGGGGT-TSSEEEEEETTEEE
T ss_pred ---HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----c-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999987 2 3789999999999986 49999999999999
Q ss_pred ecCCcccccc
Q 000957 1194 KDDHQHSIIE 1203 (1209)
Q Consensus 1194 ~~~~~~s~~~ 1203 (1209)
..|++..++.
T Consensus 223 ~~g~~~~l~~ 232 (247)
T 2ff7_A 223 EQGKHKELLS 232 (247)
T ss_dssp EEECHHHHHT
T ss_pred EECCHHHHHh
Confidence 8887666544
No 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=5.7e-18 Score=183.49 Aligned_cols=142 Identities=20% Similarity=0.155 Sum_probs=109.0
Q ss_pred HHHHHHhhhcccc---cCC--cchhhhhhccCC----cc---ccchhHHHHHHHHcCCcc--ccccCCCChhhhhhhhHH
Q 000957 1050 EINKIIRELWQQT---YRG--QDIDYIRIHSDS----EG---AGTRSYSYKVLMQTGDAE--LEMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~---~~~--~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ 1115 (1209)
.+++.++++||.. +.. +..+++.+.... .+ ......+..++..++... ...++.|||||||
T Consensus 94 ~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkq----- 168 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQ----- 168 (279)
T ss_dssp HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH-----
T ss_pred HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH-----
Confidence 3455677888764 223 777777653211 11 111233456677777654 3456899999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEE--EEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQL--IVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~--i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|++||+||+.+|++|||||||+|||+.++..|.++|.++. . .|.+| |+||||++++..+||+++++..|+|.
T Consensus 169 -Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~----~-~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 169 -RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS----D-SYPTLAMIYVTHFIEEITANFSKILLLKDGQSI 242 (279)
T ss_dssp -HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH----H-HCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE
T ss_pred -HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHH----H-CCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999883 2 37889 99999999999999999999999999
Q ss_pred ecCCccccc
Q 000957 1194 KDDHQHSII 1202 (1209)
Q Consensus 1194 ~~~~~~s~~ 1202 (1209)
..|++..++
T Consensus 243 ~~g~~~~~~ 251 (279)
T 2ihy_A 243 QQGAVEDIL 251 (279)
T ss_dssp EEEEHHHHC
T ss_pred EECCHHHHh
Confidence 887655543
No 30
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.67 E-value=3.2e-17 Score=176.25 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=104.6
Q ss_pred HHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc-------------ccccCCCChhhhhhhhH
Q 000957 1050 EINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE-------------LEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1050 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~lSgG~k~l~sl 1114 (1209)
.+++.++++||.+ |+++..+++.+... .. .......++..++..+ ...+..|||||+|
T Consensus 90 ~~~~~i~~v~Q~~~l~~~tv~enl~~~~~-~~--~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkq---- 162 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFNETIKYNILYGKL-DA--TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQ---- 162 (260)
T ss_dssp HHHTTEEEECSSCCCCSEEHHHHHHTTCT-TC--CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHH----
T ss_pred HHhccEEEEcCCCcccccCHHHHHhccCC-CC--CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHH----
Confidence 4556688899876 56678888876321 11 1122233333333221 1234689999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++||+||+.+|++|+|||||++||+.+...|.+.|..+ . .|.+||+||||+.++. .||+++++..|+|..
T Consensus 163 --Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l-----~-~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 163 --RIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-----R-KNRTLIIIAHRLSTIS-SAESIILLNKGKIVE 233 (260)
T ss_dssp --HHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH-----T-TTSEEEEECSSGGGST-TCSEEEEEETTEEEE
T ss_pred --HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh-----c-CCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999887 2 3789999999999986 599999999999998
Q ss_pred cCCccccc
Q 000957 1195 DDHQHSII 1202 (1209)
Q Consensus 1195 ~~~~~s~~ 1202 (1209)
.|++..++
T Consensus 234 ~g~~~~l~ 241 (260)
T 2ghi_A 234 KGTHKDLL 241 (260)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 88765554
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.66 E-value=4.4e-17 Score=174.65 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=105.1
Q ss_pred HHh-hhccccc-CCcchhhhhhccCCccccchhHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCC
Q 000957 1054 IIR-ELWQQTY-RGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNC 1128 (1209)
Q Consensus 1054 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~ 1128 (1209)
.++ ++||.+. ..+..+++.+..... .........++..++.. . ...++.||||||| |++||+||+.+|
T Consensus 75 ~i~~~v~Q~~~l~~tv~enl~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq------Rv~lAraL~~~p 147 (263)
T 2pjz_A 75 RYSTNLPEAYEIGVTVNDIVYLYEELK-GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSV------LVRTSLALASQP 147 (263)
T ss_dssp TEEECCGGGSCTTSBHHHHHHHHHHHT-CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHH------HHHHHHHHHTCC
T ss_pred heEEEeCCCCccCCcHHHHHHHhhhhc-chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHH------HHHHHHHHHhCC
Confidence 466 7777652 445666665532111 11123455677777765 4 3556899999999 999999999999
Q ss_pred CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhh-HhhhhcCcEEeecCCccccc
Q 000957 1129 GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQ-RQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1129 ~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~-~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
++|+|||||++||+.++..+.+.|..+ . . ++|+||||++++..+|| +++.+..|++...|++..++
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~-----~--~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEY-----G--K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHS-----C--S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHh-----c--C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999876 2 2 99999999999999999 99999999999888766554
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.65 E-value=6.3e-17 Score=172.65 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=104.0
Q ss_pred HHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCccc-------------cccCCCChhhhhhhhHHH
Q 000957 1052 NKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAEL-------------EMRGRCSAGQKVLASLII 1116 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~lSgG~k~l~sl~i 1116 (1209)
++.++++||.+ |+++..+++.+..... ........++..++..+. ..++.|||||+|
T Consensus 75 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q------ 146 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGD--YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ------ 146 (243)
T ss_dssp TTTCCEECCSSCCCCEEHHHHTTSCTTSC--SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHH------
T ss_pred HhhEEEEcCCCccccccHHHHHhhhccCC--CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHH------
Confidence 34577888875 5667788876641111 111223445554443321 234689999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~ 1196 (1209)
|++||++|+.+|++|+|||||+|||+.++..|.+.|..+ . .|.++|+||||+.++. .||+++++..|+|...|
T Consensus 147 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-----~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 219 (243)
T 1mv5_A 147 RLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-----M-KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSG 219 (243)
T ss_dssp HHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH-----H-TTSEEEEECCSHHHHH-HCSEEEEEETTEECCCS
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh-----c-CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999987 2 4789999999999986 59999999999999888
Q ss_pred Cccccc
Q 000957 1197 HQHSII 1202 (1209)
Q Consensus 1197 ~~~s~~ 1202 (1209)
++..++
T Consensus 220 ~~~~~~ 225 (243)
T 1mv5_A 220 KHNELV 225 (243)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 765554
No 33
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.65 E-value=3.8e-17 Score=169.20 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=95.7
Q ss_pred HHHHhhhcccc--cCC-cchhhhhhccCCcc-ccchhHHHHHHHHcCCcc-ccccCCCChhhhhhhhHHHHHHHHHHhcc
Q 000957 1052 NKIIRELWQQT--YRG-QDIDYIRIHSDSEG-AGTRSYSYKVLMQTGDAE-LEMRGRCSAGQKVLASLIIRLALAETFCL 1126 (1209)
Q Consensus 1052 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~lSgG~k~l~sl~ir~~la~~~~~ 1126 (1209)
.+.++++||.+ |++ +..+++.+.....+ ......+..++..++... ...+..|||||+| |++||++|+.
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkq------rv~laraL~~ 150 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIR------RVQLASTLLV 150 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHH------HHHHHHHTTS
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHH------HHHHHHHHHh
Confidence 34577888875 343 67777765322111 111234556677776544 4556899999999 9999999999
Q ss_pred CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhh
Q 000957 1127 NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAE 1187 (1209)
Q Consensus 1127 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~ 1187 (1209)
+|++|+|||||++||+.++..|.+.|..+. ..|.+||+||||+.++..+|++++..
T Consensus 151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~-----~~g~tiiivtHd~~~~~~~~d~v~~~ 206 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEIL-----KEKGIVIISSREELSYCDVNENLHKY 206 (214)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHH-----HHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHH-----hCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 999999999999999999999999999873 23679999999999999888887654
No 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.64 E-value=1.5e-16 Score=170.43 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=97.9
Q ss_pred Hhhhcccc--cCC-cchhhhhhccC----Cc-c-ccchhHHHHHHHHcCC-cc--ccccCC-CChhhhhhhhHHHHHHHH
Q 000957 1055 IRELWQQT--YRG-QDIDYIRIHSD----SE-G-AGTRSYSYKVLMQTGD-AE--LEMRGR-CSAGQKVLASLIIRLALA 1121 (1209)
Q Consensus 1055 ~~~~~~~~--~~~-~~~~~~~~~~~----~~-~-~~~~~~~~~~~~~~~~-~~--~~~~~~-lSgG~k~l~sl~ir~~la 1121 (1209)
++++||.+ |++ +..+++.+... .. . ......+..++..++. .. ...++. ||||||| |++||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQ------rv~iA 155 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKK------RNEIL 155 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHH------HHHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH------HHHHH
Confidence 56677765 333 45566544211 00 0 1112234556666776 33 345577 9999999 99999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh-hhHhhhhcCcEEeecCCcc
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI-GQRQHAEKYYRVAKDDHQH 1199 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 1199 (1209)
+||+.+|++|||||||+|||+.++..|.++|..+ ...|.+||+||||++++..+ ||+++++..|+|...|++.
T Consensus 156 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l-----~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM-----RGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHH-----CSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-----HhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999999999987 34588999999999999988 5999999999999887654
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.63 E-value=2e-16 Score=170.77 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=89.8
Q ss_pred HHHHHHHHcCCc-c--ccccC-CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1085 YSYKVLMQTGDA-E--LEMRG-RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1085 ~~~~~~~~~~~~-~--~~~~~-~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
.+..++..++.. . ...++ .||||||| |++||+||+.+|++|||||||+|||+.++..|.++|..+
T Consensus 142 ~~~~~l~~~gl~~~~~~~~~~~~LSgGq~Q------Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l----- 210 (267)
T 2zu0_C 142 LMEEKIALLKMPEDLLTRSVNVGFSGGEKK------RNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL----- 210 (267)
T ss_dssp HHHHHHHHTTCCTTTTTSBTTTTCCHHHHH------HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHcCCChhHhcCCcccCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----
Confidence 345566777764 2 23445 59999999 999999999999999999999999999999999988876
Q ss_pred cCCCcEEEEEecCHHHHHHh-hhHhhhhcCcEEeecCCcccc
Q 000957 1161 GQENFQLIVITHDERFAQLI-GQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~~~~~~~-~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
...|.+||+||||+.++..+ ||+++++..|+|...|++..+
T Consensus 211 ~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 211 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp CCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred HhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 34589999999999999887 899999999999988876543
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=180.49 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=109.5
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc--ccccCC-----------CChhhhhhhh
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE--LEMRGR-----------CSAGQKVLAS 1113 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------lSgG~k~l~s 1113 (1209)
..+++.++++||.+ |+++..+++.+... .....+..++..++... ..++.. |||||+|
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~----~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQ--- 162 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAA----HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ--- 162 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCC----SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHH---
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccc----cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHH---
Confidence 45567889999986 67778888754321 12234455666666554 233444 9999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1114 LIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1114 l~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|+||||||+.+|++|+|||||+|||+.++..+...|..+ ..+.++|+||||++.+. +||++++++.|+|.
T Consensus 163 ---RvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~------~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 163 ---LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA------FADCTVILCEARIEAML-ECDQFLVIEENKVR 232 (390)
T ss_dssp ---HHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT------TTTSCEEEECSSSGGGT-TCSEEEEEETTEEE
T ss_pred ---HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH------hCCCEEEEEEcCHHHHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999888764 24789999999998664 69999999999999
Q ss_pred ecCCccccccc
Q 000957 1194 KDDHQHSIIEA 1204 (1209)
Q Consensus 1194 ~~~~~~s~~~~ 1204 (1209)
..|++..++..
T Consensus 233 ~~g~~~el~~~ 243 (390)
T 3gd7_A 233 QYDSILELYHY 243 (390)
T ss_dssp EESSHHHHHHC
T ss_pred EECCHHHHHhC
Confidence 99987776654
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.60 E-value=3.1e-16 Score=166.23 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=79.8
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..+..||||||| |++||+||+.+|++|+|||||++||+.++..|...|..+. . ...|.++|+||||..++.
T Consensus 123 ~~~~~LSgGqkq------Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~--~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 123 EKGVNLSGGQKQ------RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPK-G--MLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp TTSBCCCHHHHH------HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTT-S--TTTTSEEEEECSCSTTGG
T ss_pred CCCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHH-h--hcCCCEEEEEecChHHHH
Confidence 345789999999 9999999999999999999999999999999998774210 0 124789999999999985
Q ss_pred HhhhHhhhhcCcEEeecCCccccc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
+||+++++..|+|...|++..+.
T Consensus 194 -~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 194 -QVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp -GSSEEEEEETTEEEEEECHHHHH
T ss_pred -hCCEEEEEeCCEEEEeCCHHHHh
Confidence 69999999999999888766554
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.58 E-value=3.2e-15 Score=181.96 Aligned_cols=142 Identities=22% Similarity=0.207 Sum_probs=108.2
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc---------c----cccCCCChhhhhhhh
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE---------L----EMRGRCSAGQKVLAS 1113 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~lSgG~k~l~s 1113 (1209)
..+++.++++||.+ |+++..+++.+...............++...+..+ . +....|||||||
T Consensus 414 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~q--- 490 (595)
T 2yl4_A 414 VWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQ--- 490 (595)
T ss_dssp HHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHH---
T ss_pred HHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHH---
Confidence 45667789999986 67889999877432211111223344444443221 1 123689999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1114 LIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1114 l~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|++|||||+.+|++|+|||||++||+.+...+.+.|.++. .|.|+|+|||++..+. .||+++++..|+|.
T Consensus 491 ---rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~------~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 491 ---RIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM------DGRTVLVIAHRLSTIK-NANMVAVLDQGKIT 560 (595)
T ss_dssp ---HHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHH------TTSEEEEECCCHHHHH-HSSEEEEEETTEEE
T ss_pred ---HHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHh------cCCEEEEEecCHHHHH-cCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999872 2689999999999986 59999999999999
Q ss_pred ecCCcccccc
Q 000957 1194 KDDHQHSIIE 1203 (1209)
Q Consensus 1194 ~~~~~~s~~~ 1203 (1209)
..|++..++.
T Consensus 561 ~~g~~~~l~~ 570 (595)
T 2yl4_A 561 EYGKHEELLS 570 (595)
T ss_dssp EEECSCC---
T ss_pred EECCHHHHHh
Confidence 9887776654
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.57 E-value=2.8e-15 Score=181.38 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=108.9
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccch------hHHHHHHHHcC-Ccc---ccccCCCChhhhhhhhHH
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTR------SYSYKVLMQTG-DAE---LEMRGRCSAGQKVLASLI 1115 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~---~~~~~~lSgG~k~l~sl~ 1115 (1209)
...+++.+++++|.+ |+++..+++.+.......... ......+...+ +.+ .+....|||||||
T Consensus 412 ~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ----- 486 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ----- 486 (587)
T ss_dssp HHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH-----
T ss_pred HHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH-----
Confidence 456778899999987 678889998764322111000 01111122221 111 2334689999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD 1195 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~ 1195 (1209)
|++|||||+.+|++|+|||||++||+.+...+.+.|..+ ..|.|+|+|||++..+. .||+++++..|+|...
T Consensus 487 -rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~------~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 487 -RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY------TKGCTTFIITQKIPTAL-LADKILVLHEGKVAGF 558 (587)
T ss_dssp -HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH------STTCEEEEEESCHHHHT-TSSEEEEEETTEEEEE
T ss_pred -HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh------CCCCEEEEEecChHHHH-hCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999886 24789999999999986 8999999999999999
Q ss_pred CCcccccc
Q 000957 1196 DHQHSIIE 1203 (1209)
Q Consensus 1196 ~~~~s~~~ 1203 (1209)
|+...++.
T Consensus 559 g~~~el~~ 566 (587)
T 3qf4_A 559 GTHKELLE 566 (587)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 98776654
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.57 E-value=3.2e-15 Score=181.40 Aligned_cols=141 Identities=20% Similarity=0.231 Sum_probs=108.7
Q ss_pred HHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc-------------ccccCCCChhhhhhhh
Q 000957 1049 EEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE-------------LEMRGRCSAGQKVLAS 1113 (1209)
Q Consensus 1049 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~lSgG~k~l~s 1113 (1209)
..+++.++++||.+ |+++..+++.+..... ........++...+..+ .+....|||||||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~q--- 487 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEGE--YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQ--- 487 (582)
T ss_pred HHHhcCeEEEcCCCccccccHHHHHhccCCCC--CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHH---
Confidence 34566788999986 6788889887743111 11122333333333221 1233689999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1114 LIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1114 l~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|++|||||+.+|++|+|||||++||+.+...+.+.|..+ . .|.|+|+|||++..+. .||+++++..|+|.
T Consensus 488 ---r~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-----~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 488 ---RVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL-----Q-KNKTVLVIAHRLSTIE-QADEILVVDEGEII 557 (582)
T ss_pred ---HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH-----c-CCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999887 2 3789999999999987 69999999999999
Q ss_pred ecCCccccccc
Q 000957 1194 KDDHQHSIIEA 1204 (1209)
Q Consensus 1194 ~~~~~~s~~~~ 1204 (1209)
..|+...++..
T Consensus 558 ~~g~~~~l~~~ 568 (582)
T 3b5x_A 558 ERGRHADLLAQ 568 (582)
T ss_pred EECCHHHHHhC
Confidence 99877666543
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.56 E-value=2.9e-15 Score=181.42 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=108.6
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCc----------c---ccccCCCChhhhhhh
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDA----------E---LEMRGRCSAGQKVLA 1112 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~lSgG~k~l~ 1112 (1209)
...+++.+++++|.+ |+++..+++.+...... .......+...+.. + .+....|||||||
T Consensus 410 ~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q-- 484 (578)
T 4a82_A 410 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT---DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ-- 484 (578)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCC---HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH--
T ss_pred HHHHhhheEEEeCCCccCcccHHHHHhcCCCCCC---HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH--
Confidence 345677899999987 68899999877432111 11222232222211 1 1233589999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
|++|||||+++|++|+|||||++||+.+...+.+.|..+ ..|.|+|+|||+++++.. ||++++++.|+|
T Consensus 485 ----rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~------~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 553 (578)
T 4a82_A 485 ----RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL------SKDRTTLIVAHRLSTITH-ADKIVVIENGHI 553 (578)
T ss_dssp ----HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH------TTTSEEEEECSSGGGTTT-CSEEEEEETTEE
T ss_pred ----HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH------cCCCEEEEEecCHHHHHc-CCEEEEEECCEE
Confidence 999999999999999999999999999999999988876 246899999999999864 999999999999
Q ss_pred eecCCccccccc
Q 000957 1193 AKDDHQHSIIEA 1204 (1209)
Q Consensus 1193 ~~~~~~~s~~~~ 1204 (1209)
...|++..++..
T Consensus 554 ~~~g~~~el~~~ 565 (578)
T 4a82_A 554 VETGTHRELIAK 565 (578)
T ss_dssp EEEECHHHHHHT
T ss_pred EEECCHHHHHhC
Confidence 999987766543
No 42
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.56 E-value=1.3e-15 Score=160.66 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=78.2
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHH-HHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAAL-HRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l-~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
++.||||||| |++||+||+.+|++|+|||||+|||+.++..+.+.+ ..+ ..|.++|+||||+.++.
T Consensus 128 ~~~LSgGqkq------rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~------~~~~tvi~vtH~~~~~~- 194 (229)
T 2pze_A 128 GITLSGGQRA------RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL------MANKTRILVTSKMEHLK- 194 (229)
T ss_dssp CTTSCHHHHH------HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC------TTTSEEEEECCCHHHHH-
T ss_pred CCcCCHHHHH------HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh------hCCCEEEEEcCChHHHH-
Confidence 3689999999 999999999999999999999999999999888853 333 24789999999999986
Q ss_pred hhhHhhhhcCcEEeecCCcccccc
Q 000957 1180 IGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.||+++++..|+|...|++..+..
T Consensus 195 ~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 195 KADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HCSEEEEEETTEEEEEECHHHHHT
T ss_pred hCCEEEEEECCEEEEECCHHHHHh
Confidence 599999999999998887665543
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.56 E-value=2.9e-15 Score=181.91 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=108.9
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCc----------c---ccccCCCChhhhhhh
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDA----------E---LEMRGRCSAGQKVLA 1112 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~lSgG~k~l~ 1112 (1209)
...+++.+++++|.+ |+++..+++.+....... .....++...+.. + .+....|||||||
T Consensus 424 ~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Q-- 498 (598)
T 3qf4_B 424 RSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD---EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ-- 498 (598)
T ss_dssp HHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCT---THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHH--
T ss_pred HHHHHhceEEEeCCCccccccHHHHHhcCCCCCCH---HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHH--
Confidence 456778899999987 688899998764321111 1122222211111 1 1223689999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
|++|||||+.+|++|+|||||++||+.+...+.+.|.++. .|.|+|+|||++..+.. ||+++++..|+|
T Consensus 499 ----rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~------~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 567 (598)
T 3qf4_B 499 ----LLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM------EGKTSIIIAHRLNTIKN-ADLIIVLRDGEI 567 (598)
T ss_dssp ----HHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH------TTSEEEEESCCTTHHHH-CSEEEEECSSSE
T ss_pred ----HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc------CCCEEEEEecCHHHHHc-CCEEEEEECCEE
Confidence 9999999999999999999999999999999999998872 47899999999999875 999999999999
Q ss_pred eecCCccccccc
Q 000957 1193 AKDDHQHSIIEA 1204 (1209)
Q Consensus 1193 ~~~~~~~s~~~~ 1204 (1209)
...|++..++..
T Consensus 568 ~~~g~~~~l~~~ 579 (598)
T 3qf4_B 568 VEMGKHDELIQK 579 (598)
T ss_dssp EECSCHHHHHHT
T ss_pred EEECCHHHHHhC
Confidence 999987766543
No 44
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.56 E-value=5.2e-15 Score=173.18 Aligned_cols=186 Identities=15% Similarity=0.211 Sum_probs=90.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcHHHHHHHHhhhcccccCCcchhhhhhccCCc--ccc
Q 000957 1004 QYKDIDKRHFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSE--GAG 1081 (1209)
Q Consensus 1004 ~y~~~~~~y~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 1081 (1209)
+|..++.+|.....++.........+...+..++......+...+..++..+..+|..++.+.... +.+..+.. +..
T Consensus 229 e~e~l~e~l~~l~~~l~~~r~~~~~l~~~i~~L~~~r~~~~~~~~~~i~~~~~~~~~~l~~~~~~~-~~~~~g~~~l~~~ 307 (430)
T 1w1w_A 229 RYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSN-VELAGGNASLTIE 307 (430)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHTC------------CEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-ccCCCceEEEEec
Confidence 466666666666555555444555555566666665555566777888888887777655321000 00000000 000
Q ss_pred c--hhHHHHHH--HHcCCccccccCCCChhhhhhhhHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHhHHHHHHHHH
Q 000957 1082 T--RSYSYKVL--MQTGDAELEMRGRCSAGQKVLASLIIRLALAETFC----LNCGILALDEPTTNLDGPNAESLAAALH 1153 (1209)
Q Consensus 1082 ~--~~~~~~~~--~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~----~~~~~l~lDEp~~~LD~~~~~~~~~~l~ 1153 (1209)
. ..+...+- ...+......++.|||||++ +++||++|+ .+||+|+|||||++||+.++..|+.+|.
T Consensus 308 d~~~~~~~g~~~~~~~~~~~~~~~~~lS~Gq~~------~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~ 381 (430)
T 1w1w_A 308 DEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKT------VAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIR 381 (430)
T ss_dssp ----------CEEEECTTCCCCCGGGSCHHHHH------HHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred CCCCcccCceEEEEECCCccccccccCCcchHH------HHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHH
Confidence 0 00000000 00011122345679999999 555566555 6899999999999999999999999998
Q ss_pred HHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeec-CCcccccccccc
Q 000957 1154 RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKD-DHQHSIIEAQEI 1207 (1209)
Q Consensus 1154 ~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~-~~~~s~~~~~~~ 1207 (1209)
.+ ...|.|||||||+..++. .+++.++|.+. +.|.|.+....+
T Consensus 382 ~~-----~~~~~~~ii~th~~~~~~------~~d~~~~~~~~~~~~~s~~~~~~~ 425 (430)
T 1w1w_A 382 RH-----RNPDLQFIVISLKNTMFE------KSDALVGVYRQQQENSSKIITLDL 425 (430)
T ss_dssp HH-----CBTTBEEEEECSCHHHHT------TCSEEEEEEEETTTTEEEEEEEEG
T ss_pred HH-----hcCCCEEEEEECCHHHHH------hCCEEEEEEEeCCCCeeEEEEEec
Confidence 87 334789999999988765 68888999987 457888776654
No 45
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.55 E-value=3.6e-15 Score=180.95 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=109.4
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCCcc-------------ccccCCCChhhhhhh
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGDAE-------------LEMRGRCSAGQKVLA 1112 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~lSgG~k~l~ 1112 (1209)
...+++.++++||.+ |+++..+++.+...... .......++...+..+ .+....|||||||
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~q-- 487 (582)
T 3b60_A 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEY--SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ-- 487 (582)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCC--CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH--
T ss_pred HHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCC--CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHH--
Confidence 345677889999987 67889999877431111 1122333333333221 1233689999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
|++|||||+++|++|+|||||++||+.+...+.+.|.++ . .|.|+|+|||++..+. .||+++++..|+|
T Consensus 488 ----rl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-----~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i 556 (582)
T 3b60_A 488 ----RIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-----Q-KNRTSLVIAHRLSTIE-QADEIVVVEDGII 556 (582)
T ss_dssp ----HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH-----H-TTSEEEEECSCGGGTT-TCSEEEEEETTEE
T ss_pred ----HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH-----h-CCCEEEEEeccHHHHH-hCCEEEEEECCEE
Confidence 999999999999999999999999999999999999887 2 3789999999999986 6999999999999
Q ss_pred eecCCccccccc
Q 000957 1193 AKDDHQHSIIEA 1204 (1209)
Q Consensus 1193 ~~~~~~~s~~~~ 1204 (1209)
...|++..++..
T Consensus 557 ~~~g~~~~l~~~ 568 (582)
T 3b60_A 557 VERGTHSELLAQ 568 (582)
T ss_dssp EEEECHHHHHHH
T ss_pred EEecCHHHHHHc
Confidence 998877666543
No 46
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.6e-15 Score=178.55 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=92.6
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
...++..++... ...++.|||||+| |++||++|+.+|++|+|||||+|||+.++..+.++|.++.. ..
T Consensus 448 ~~~~l~~l~l~~~~~~~~~~LSGGqkQ------Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~----~~ 517 (608)
T 3j16_B 448 QTDVVKPLRIDDIIDQEVQHLSGGELQ------RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL----HN 517 (608)
T ss_dssp HHHTHHHHTSTTTSSSBSSSCCHHHHH------HHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHcCChhhhcCChhhCCHHHHH------HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH----hC
Confidence 344555566543 3567899999999 99999999999999999999999999999999999998842 34
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcC--cEEeecCCccccccc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKY--YRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~--~~v~~~~~~~s~~~~ 1204 (1209)
|.+|||||||++++..+||+++++.- |++...|++.+++..
T Consensus 518 g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 518 KKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 78999999999999999999988874 788888888777653
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.54 E-value=4e-15 Score=176.26 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=79.4
Q ss_pred HHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1087 YKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1087 ~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
..++..++... ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..+.++|.++. ...|
T Consensus 367 ~~~l~~~~l~~~~~~~~~~LSGGq~Q------Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~----~~~g 436 (538)
T 3ozx_A 367 EEVTKRLNLHRLLESNVNDLSGGELQ------KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT----RERK 436 (538)
T ss_dssp HHTTTTTTGGGCTTSBGGGCCHHHHH------HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH----HHTT
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHH------HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH----HhCC
Confidence 34444455443 3566899999999 9999999999999999999999999999999999999984 2357
Q ss_pred cEEEEEecCHHHHHHhhhHhhhhcC
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAEKY 1189 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~~~ 1189 (1209)
.+||+||||+.++..+||++++++-
T Consensus 437 ~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 437 AVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp CEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 8999999999999999999887753
No 48
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.51 E-value=6.1e-15 Score=160.26 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=77.1
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHH-HHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAAL-HRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l-~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
++.|||||+| |++||++|+.+|++|+|||||+|||+.++..|.+.| ..+ ..|.+||+||||+.++.
T Consensus 157 ~~~LSgGq~Q------Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~------~~~~tviivtHd~~~~~- 223 (290)
T 2bbs_A 157 GITLSGGQRA------RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL------MANKTRILVTSKMEHLK- 223 (290)
T ss_dssp -CCCCHHHHH------HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC------TTTSEEEEECCCHHHHH-
T ss_pred cCcCCHHHHH------HHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh------hCCCEEEEEecCHHHHH-
Confidence 3689999999 999999999999999999999999999999888853 332 24789999999999986
Q ss_pred hhhHhhhhcCcEEeecCCccccc
Q 000957 1180 IGQRQHAEKYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~~~s~~ 1202 (1209)
.||+++++..|++...|++..++
T Consensus 224 ~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 224 KADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp HSSEEEEEETTEEEEEECHHHHH
T ss_pred cCCEEEEEECCeEEEeCCHHHHh
Confidence 59999999999999888765543
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.49 E-value=2e-14 Score=172.66 Aligned_cols=108 Identities=21% Similarity=0.241 Sum_probs=89.0
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
+..++..++... ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..+.++|..+. ...
T Consensus 452 ~~~~l~~~~l~~~~~~~~~~LSGGe~Q------Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~----~~~ 521 (607)
T 3bk7_A 452 KTELLKPLGIIDLYDRNVEDLSGGELQ------RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM----EKN 521 (607)
T ss_dssp HHHTHHHHTCTTTTTSBGGGCCHHHHH------HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH----HHT
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHH------HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH----HhC
Confidence 344556666543 3456899999999 9999999999999999999999999999999999999883 235
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhcC--cEEeecCCcccccc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEKY--YRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~~--~~v~~~~~~~s~~~ 1203 (1209)
|.+||+||||+.++..+||+++++.- +.+...|++.+++.
T Consensus 522 g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 522 EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 78999999999999999999888863 55556676666543
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.49 E-value=1.4e-14 Score=172.48 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=87.0
Q ss_pred HHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCc
Q 000957 1088 KVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENF 1165 (1209)
Q Consensus 1088 ~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~ 1165 (1209)
.++..++... ...++.|||||+| |++||++|+.+|++|||||||+|||+.++..|.++|.++.. ..|.
T Consensus 384 ~~l~~~~l~~~~~~~~~~LSGGe~q------rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~----~~g~ 453 (538)
T 1yqt_A 384 ELLKPLGIIDLYDREVNELSGGELQ------RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME----KNEK 453 (538)
T ss_dssp HTTTTTTCGGGTTSBGGGCCHHHHH------HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH----HHTC
T ss_pred HHHHHcCChhhhcCChhhCCHHHHH------HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH----hCCC
Confidence 3444455433 3456899999999 99999999999999999999999999999999999998832 2478
Q ss_pred EEEEEecCHHHHHHhhhHhhhhcC--cEEeecCCcccccc
Q 000957 1166 QLIVITHDERFAQLIGQRQHAEKY--YRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1166 ~~i~itH~~~~~~~~~~~~~~~~~--~~v~~~~~~~s~~~ 1203 (1209)
+||+||||++++..+||+++++.. +.+...|++..++.
T Consensus 454 tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 454 TALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999888863 45666677665543
No 51
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.49 E-value=2.5e-14 Score=161.30 Aligned_cols=93 Identities=27% Similarity=0.384 Sum_probs=76.8
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..++.|||||+++++|+.|+++|++++.+|++|+|||||+|||+..+..|..+|..+ ...|.|||+||||..+..
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~-----~~~~~~vi~~sH~~~~~~ 318 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY-----LKKIPQVILVSHDEELKD 318 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHT-----GGGSSEEEEEESCGGGGG
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-----HhcCCEEEEEEChHHHHH
Confidence 345789999999999999999999999999999999999999999999999999887 334779999999977643
Q ss_pred HhhhHhhhhcCcEEeecCCcccccc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.+++.+.+...+ |.|.+.
T Consensus 319 ------~~d~~~~l~~~~-g~s~v~ 336 (339)
T 3qkt_A 319 ------AADHVIRISLEN-GSSKVE 336 (339)
T ss_dssp ------GCSEEEEEEEET-TEEEEE
T ss_pred ------hCCEEEEEEecC-CccEEE
Confidence 455555555443 666554
No 52
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.48 E-value=2.9e-14 Score=161.71 Aligned_cols=89 Identities=26% Similarity=0.280 Sum_probs=74.2
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
.+++.|||||+|+++|+..+++|+++..+|++|||||||+|||+.++..+..+|..+ ...|.+|||||||+++ .
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l-----~~~g~tvi~itH~~~~-~ 348 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL-----ERLNKVIVFITHDREF-S 348 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGG-----GGSSSEEEEEESCHHH-H
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHH-----HhCCCEEEEEecchHH-H
Confidence 345789999999666666666666666899999999999999999999999999887 3458999999999998 5
Q ss_pred HhhhHhhhhcCcEEe
Q 000957 1179 LIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~ 1193 (1209)
..||+++++..|+|+
T Consensus 349 ~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 349 EAFDRKLRITGGVVV 363 (365)
T ss_dssp TTCSCEEEEETTEEC
T ss_pred HhCCEEEEEECCEEE
Confidence 568888877777765
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.47 E-value=4.6e-14 Score=168.01 Aligned_cols=93 Identities=22% Similarity=0.225 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1085 YSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
.+..++..+|... ..+++.|||||+| |++||+||+.+|++|||||||++||+.++..+..+|..+. .
T Consensus 138 ~~~~~l~~lgl~~~~~~~~~~LSgGekQ------Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~-----~ 206 (538)
T 1yqt_A 138 KLEEVVKALELENVLEREIQHLSGGELQ------RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS-----E 206 (538)
T ss_dssp CHHHHHHHTTCTTTTTSBGGGCCHHHHH------HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHcCCChhhhCChhhCCHHHHH------HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH-----h
Confidence 3456777777543 3456899999999 9999999999999999999999999999999999999983 2
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEK 1188 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~ 1188 (1209)
.|.+||+||||+.++..+||++++++
T Consensus 207 ~g~tvi~vsHd~~~~~~~~dri~vl~ 232 (538)
T 1yqt_A 207 EGKSVLVVEHDLAVLDYLSDIIHVVY 232 (538)
T ss_dssp TTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 48899999999999999999987764
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.46 E-value=5.3e-14 Score=168.98 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1085 YSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
.+..++..+|... ...++.|||||+| |++||+||+.+|++|||||||+|||+.++..+.++|+.+. .
T Consensus 208 ~~~~~L~~lgL~~~~~~~~~~LSGGekQ------RvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~-----~ 276 (607)
T 3bk7_A 208 KFEEVVKELELENVLDRELHQLSGGELQ------RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA-----N 276 (607)
T ss_dssp CHHHHHHHTTCTTGGGSBGGGCCHHHHH------HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHcCCCchhCCChhhCCHHHHH------HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH-----h
Confidence 3456777777654 3456899999999 9999999999999999999999999999999999999983 2
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEK 1188 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~ 1188 (1209)
.|.+||+||||+.++..+||++++++
T Consensus 277 ~g~tvIivsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 277 EGKAVLVVEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp TTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred cCCEEEEEecChHHHHhhCCEEEEEC
Confidence 48899999999999999999887765
No 55
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.46 E-value=1.7e-12 Score=155.27 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=68.3
Q ss_pred ccccCCC-ChhhhhhhhHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1098 LEMRGRC-SAGQKVLASLIIRLALAETFCLNC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1098 ~~~~~~l-SgG~k~l~sl~ir~~la~~~~~~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
..+++.| ||||+| |++||++|+.+| ++|||||||+|||+.+...|...|..+. . |.|||+|||++
T Consensus 391 ~~~~~~l~SgG~~q------rv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~-----~-~~~vi~itH~~ 458 (517)
T 4ad8_A 391 LGPLSDVASGGELS------RVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-----D-TRQVLVVTHLA 458 (517)
T ss_dssp CCBSSSSSCSSHHH------HHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHH-----H-HSEEEEECCCH
T ss_pred cccHHhcCCHHHHH------HHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHh-----C-CCEEEEEecCH
Confidence 4456787 999999 999999999999 9999999999999999999999999982 2 68999999999
Q ss_pred HHHHHhhhHhhhhcC
Q 000957 1175 RFAQLIGQRQHAEKY 1189 (1209)
Q Consensus 1175 ~~~~~~~~~~~~~~~ 1189 (1209)
.++. +||++++.+.
T Consensus 459 ~~~~-~~d~~~~~~~ 472 (517)
T 4ad8_A 459 QIAA-RAHHHYKVEK 472 (517)
T ss_dssp HHHH-HSSEEEEEEC
T ss_pred HHHH-hCCEEEEEec
Confidence 9886 4666655533
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.45 E-value=5.6e-14 Score=173.75 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=87.5
Q ss_pred HHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1089 VLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCG--ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1089 ~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~--~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
++..+|..+ ...++.|||||+| |++||+||+.+|+ +|||||||+|||+.++..|.++|..+ ...
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~Q------Rv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l-----~~~ 253 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQ------RIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM-----RDL 253 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHH------HHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH-----HHT
T ss_pred HHHHcCCchhhhcCCcccCCHHHHH------HHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHH-----HHc
Confidence 355556543 3566899999999 9999999999988 99999999999999999999999998 235
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhh------cCcEEeecCCcccccc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAE------KYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~~~~s~~~ 1203 (1209)
|.|||+||||++++. .||+++++ +.|+|...|++..++.
T Consensus 254 g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 254 GNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp TCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCEEEEEeCCHHHHh-hCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 889999999999876 59999888 8899999887766543
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.44 E-value=1.3e-13 Score=163.40 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=79.5
Q ss_pred HHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1086 SYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1086 ~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
...++..++... ...++.|||||+| |++||+||+.+|++|||||||++||+.++..|..+|+.+ ..
T Consensus 119 ~~~~l~~l~l~~~~~~~~~~LSgGe~Q------rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l-----~~- 186 (538)
T 3ozx_A 119 KDEVKELLNMTNLWNKDANILSGGGLQ------RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL-----LK- 186 (538)
T ss_dssp HHHHHHHTTCGGGTTSBGGGCCHHHHH------HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH-----CT-
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHH------HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH-----hC-
Confidence 445666666544 3456899999999 999999999999999999999999999999999999988 33
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhhc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAEK 1188 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~~ 1188 (1209)
|.+||+||||+.++..+||++.+++
T Consensus 187 g~tii~vsHdl~~~~~~~d~i~vl~ 211 (538)
T 3ozx_A 187 NKYVIVVDHDLIVLDYLTDLIHIIY 211 (538)
T ss_dssp TSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCEEEEEEeChHHHHhhCCEEEEec
Confidence 8899999999999999999987765
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.3e-13 Score=165.02 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCcc--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC
Q 000957 1085 YSYKVLMQTGDAE--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~ 1162 (1209)
.+..++..++... ...++.|||||+| |++||+||+.+|++|||||||++||+.++..+..+|+.+ ..
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~LSgGe~Q------rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l-----~~ 269 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEKLSGGELQ------RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL-----LA 269 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTTCCHHHHH------HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG-----GT
T ss_pred HHHHHHHHcCCcchhCCChHHCCHHHHH------HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH-----Hh
Confidence 4556677777654 3456899999999 999999999999999999999999999999999999887 34
Q ss_pred CCcEEEEEecCHHHHHHhhhHhhhhc
Q 000957 1163 ENFQLIVITHDERFAQLIGQRQHAEK 1188 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~~~~~~~~~~ 1188 (1209)
.|.+||+||||+.++..+||++.+++
T Consensus 270 ~g~tvi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 270 PTKYVICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp TTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 58899999999999999999988775
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.42 E-value=1.3e-13 Score=170.60 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=87.3
Q ss_pred HHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1088 KVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNC---GILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1088 ~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~---~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
..+..++... ..+++.|||||+| |++||+||+.+| ++|||||||+|||+.+...+.++|..+.
T Consensus 525 ~~l~~~~l~~~~~~~~~~~LSgG~~q------rv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~----- 593 (670)
T 3ux8_A 525 ETLYDVGLGYMKLGQPATTLSGGEAQ------RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV----- 593 (670)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHH------HHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCchhhccCCchhCCHHHHH------HHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----
Confidence 3444555432 3456899999999 999999999876 5999999999999999999999999882
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhh------cCcEEeecCCcccccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAE------KYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~~~~s~~~ 1203 (1209)
..|.|||+||||++++. .||+++++ +.|+|+..|++..+..
T Consensus 594 ~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 594 DNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp HTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred HCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 34889999999999884 69999998 8999999998776643
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.41 E-value=1.5e-13 Score=170.30 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=89.2
Q ss_pred HHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1088 KVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNC---GILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1088 ~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~---~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.++..+|... ...++.|||||+| |++||++|+.+| .+|||||||+|||+.++..|.+.|..+.
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQ------RV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~----- 855 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQ------RIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLV----- 855 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHH------HHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCchhhccCCccCCCHHHHH------HHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----
Confidence 4455566543 2455799999999 999999998765 7999999999999999999999999883
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhh------cCcEEeecCCcccccccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAE------KYYRVAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~~~~s~~~~~ 1205 (1209)
..|.||||||||++++.. ||+++.+ ..|+|+..|++..++..+
T Consensus 856 ~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 856 DRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp HTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred hcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 358899999999999865 9999988 899999999888776543
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.41 E-value=8.6e-14 Score=172.23 Aligned_cols=100 Identities=28% Similarity=0.280 Sum_probs=82.8
Q ss_pred HHHHHHHHcCCcc----ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1085 YSYKVLMQTGDAE----LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1085 ~~~~~~~~~~~~~----~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
.+..++..+|... ...++.||||||| |++||++|+.+|++|||||||+|||+.+...|...|.++
T Consensus 879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQ------RVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----- 947 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKV------KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----- 947 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHSCGGGCCHHHHH------HHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-----
T ss_pred HHHHHHHHcCCCchhhcCCCccccCHHHHH------HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-----
Confidence 3455667777642 2356899999999 999999999999999999999999999999888877543
Q ss_pred cCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEeecCCc
Q 000957 1161 GQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~~~~~ 1198 (1209)
|.+||+||||++++..+||+++.+..|+|...|+.
T Consensus 948 ---g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~ 982 (986)
T 2iw3_A 948 ---EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHN 982 (986)
T ss_dssp ---SSEEEEECSCHHHHTTTCCEEECCBTTBCCC----
T ss_pred ---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCc
Confidence 46999999999999999999999999999877643
No 62
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.40 E-value=3.2e-13 Score=167.20 Aligned_cols=104 Identities=27% Similarity=0.256 Sum_probs=88.3
Q ss_pred hHHHHHHHHcCCc-c--ccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1084 SYSYKVLMQTGDA-E--LEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1084 ~~~~~~~~~~~~~-~--~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
..+..++..+|.. . ...++.||||||| |++||++|+.+|++|||||||+|||+.++..|.++|..
T Consensus 526 ~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQ------RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~------ 593 (986)
T 2iw3_A 526 EAIKDKLIEFGFTDEMIAMPISALSGGWKM------KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT------ 593 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHSBGGGCCHHHHH------HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHcCCChhhhcCCcccCCHHHHH------HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh------
Confidence 3455667777763 2 3456899999999 99999999999999999999999999999999988764
Q ss_pred cCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe-ecCCcccc
Q 000957 1161 GQENFQLIVITHDERFAQLIGQRQHAEKYYRVA-KDDHQHSI 1201 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~-~~~~~~s~ 1201 (1209)
.|.+||+||||+.++..+||+++.+..|+|. ..|+...+
T Consensus 594 --~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 594 --CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp --SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred --CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 3789999999999999999999999999986 46655443
No 63
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.40 E-value=1.7e-13 Score=180.03 Aligned_cols=144 Identities=22% Similarity=0.269 Sum_probs=108.8
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccc------hhHHHHHHHHcCCc-c---ccccCCCChhhhhhhhH
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGT------RSYSYKVLMQTGDA-E---LEMRGRCSAGQKVLASL 1114 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~---~~~~~~lSgG~k~l~sl 1114 (1209)
....+++.+++++|.+ |+++..++|.+......... .......+...+.. + .+....|||||||
T Consensus 458 ~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Q---- 533 (1284)
T 3g5u_A 458 NVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQ---- 533 (1284)
T ss_dssp CHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHH----
T ss_pred CHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHH----
Confidence 3556778899999997 68899999987543211100 01112222222211 1 1233589999999
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++|||||+.+|++|+|||||++||+.+...+...|... ..|.|+|+|||++.++.. ||+++++..|+|+.
T Consensus 534 --riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~------~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 534 --RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA------REGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE 604 (1284)
T ss_dssp --HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHH------HTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC
T ss_pred --HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH------cCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE
Confidence 999999999999999999999999999999988888775 247899999999999976 99999999999999
Q ss_pred cCCcccccc
Q 000957 1195 DDHQHSIIE 1203 (1209)
Q Consensus 1195 ~~~~~s~~~ 1203 (1209)
.|+....+.
T Consensus 605 ~g~~~~l~~ 613 (1284)
T 3g5u_A 605 QGNHDELMR 613 (1284)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 887666543
No 64
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.39 E-value=1.4e-13 Score=180.99 Aligned_cols=143 Identities=19% Similarity=0.188 Sum_probs=108.2
Q ss_pred HHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcC----------Ccc---ccccCCCChhhhhhh
Q 000957 1048 MEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTG----------DAE---LEMRGRCSAGQKVLA 1112 (1209)
Q Consensus 1048 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---~~~~~~lSgG~k~l~ 1112 (1209)
...+++.+++++|.+ |.++..+++.+....... ............+ +.+ .+....|||||||
T Consensus 1102 ~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~-~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Q-- 1178 (1284)
T 3g5u_A 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV-SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQ-- 1178 (1284)
T ss_dssp HHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCC-CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHH--
T ss_pred HHHHHhceEEECCCCccccccHHHHHhccCCCCCC-CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHH--
Confidence 456777889999987 688888988764321111 1111222222111 111 1223579999999
Q ss_pred hHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEE
Q 000957 1113 SLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1113 sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v 1192 (1209)
|++|||+|+.+|++|+|||||+|||+.+...+.+.|... ..|.|+|+||||++++. .||+++++..|+|
T Consensus 1179 ----rv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~------~~~~tvi~isH~l~~i~-~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1179 ----RIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA------REGRTCIVIAHRLSTIQ-NADLIVVIQNGKV 1247 (1284)
T ss_dssp ----HHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH------SSSSCEEEECSCTTGGG-SCSEEEEEETBEE
T ss_pred ----HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh------CCCCEEEEEecCHHHHH-cCCEEEEEECCEE
Confidence 999999999999999999999999999999999999875 25889999999999985 4999999999999
Q ss_pred eecCCccccccc
Q 000957 1193 AKDDHQHSIIEA 1204 (1209)
Q Consensus 1193 ~~~~~~~s~~~~ 1204 (1209)
+..|++...+..
T Consensus 1248 ~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1248 KEHGTHQQLLAQ 1259 (1284)
T ss_dssp EEEECHHHHHHS
T ss_pred EEECCHHHHHhC
Confidence 999987776644
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.39 E-value=3e-13 Score=167.59 Aligned_cols=103 Identities=23% Similarity=0.273 Sum_probs=87.9
Q ss_pred HHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1089 VLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNCG--ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1089 ~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~--~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
.+..+|... ...++.|||||+| |++||++|+.+|. +|||||||+|||+.++..|..+|+.+ ...
T Consensus 447 ~L~~vgL~~l~l~r~~~~LSGGe~Q------Rv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L-----~~~ 515 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSATTLSGGESQ------RIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL-----RDL 515 (916)
T ss_dssp HHHTTTCTTCBTTSBGGGCCHHHHH------HHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT-----TTT
T ss_pred HHHHcCCccccccCCcccCCHHHHH------HHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH-----Hhc
Confidence 444456542 3456899999999 9999999999876 99999999999999999999999988 456
Q ss_pred CcEEEEEecCHHHHHHhhhHhhhh------cCcEEeecCCcccccc
Q 000957 1164 NFQLIVITHDERFAQLIGQRQHAE------KYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~~~~s~~~ 1203 (1209)
|.||||||||++++.. ||+++.+ +.|+|+..|++..++.
T Consensus 516 G~TvivVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 516 GNTVIVVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp TCEEEEECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCEEEEEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 8999999999999875 9999988 8899999998776654
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.39 E-value=1e-13 Score=182.73 Aligned_cols=146 Identities=21% Similarity=0.199 Sum_probs=113.5
Q ss_pred hcHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHHHHcCC----------cc--c-cccCCCChhhhh
Q 000957 1046 MKMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVLMQTGD----------AE--L-EMRGRCSAGQKV 1110 (1209)
Q Consensus 1046 ~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~-~~~~~lSgG~k~ 1110 (1209)
.....+++.++.++|.+ |.||..++|.+..++... .....+..+...+. -+ . +....|||||||
T Consensus 1146 i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~-sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ 1224 (1321)
T 4f4c_A 1146 LNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV-TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ 1224 (1321)
T ss_dssp BCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTS-CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH
T ss_pred CCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCC-CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHH
Confidence 34678899999999998 799999999765332211 11223333332221 11 1 122479999999
Q ss_pred hhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCc
Q 000957 1111 LASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYY 1190 (1209)
Q Consensus 1111 l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~ 1190 (1209)
|+||||||+++|++|||||||++||+.+-..+.+.|+.. ..|.|+|+|+|.+..+. -||+++++..|
T Consensus 1225 ------riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~------~~~~TvI~IAHRLsTi~-~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1225 ------RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA------REGRTCIVIAHRLNTVM-NADCIAVVSNG 1291 (1321)
T ss_dssp ------HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT------SSSSEEEEECSSSSTTT-TCSEEEEESSS
T ss_pred ------HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH------cCCCEEEEeccCHHHHH-hCCEEEEEECC
Confidence 999999999999999999999999999999988888765 36889999999999986 58999999999
Q ss_pred EEeecCCcccccccc
Q 000957 1191 RVAKDDHQHSIIEAQ 1205 (1209)
Q Consensus 1191 ~v~~~~~~~s~~~~~ 1205 (1209)
+|+..|++...+...
T Consensus 1292 ~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp SEEEEECHHHHHHCC
T ss_pred EEEEECCHHHHHhCC
Confidence 999999988877554
No 67
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.38 E-value=2.8e-13 Score=166.38 Aligned_cols=107 Identities=20% Similarity=0.235 Sum_probs=90.2
Q ss_pred HHHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhh
Q 000957 1086 SYKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLN---CGILALDEPTTNLDGPNAESLAAALHRIMEDR 1159 (1209)
Q Consensus 1086 ~~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~---~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~ 1159 (1209)
...++..++... ...++.|||||+| |++||++|+.+ |++|||||||+|||+.++..|..+|..+.
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQ------Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~--- 780 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELSGGEAQ------RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV--- 780 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHH------HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHcCCCcccccCCcccCCHHHHH------HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---
Confidence 344566666543 3456899999999 99999999985 79999999999999999999999999883
Q ss_pred ccCCCcEEEEEecCHHHHHHhhhHhhhh------cCcEEeecCCccccccc
Q 000957 1160 KGQENFQLIVITHDERFAQLIGQRQHAE------KYYRVAKDDHQHSIIEA 1204 (1209)
Q Consensus 1160 ~~~~~~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~~~~s~~~~ 1204 (1209)
..|.+|||||||++++ .+||+++.+ +.|+|+..|++..++..
T Consensus 781 --~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 781 --DAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp --HTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred --hCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 3588999999999999 789999988 68899988877666543
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.37 E-value=4.1e-13 Score=164.49 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=88.1
Q ss_pred HHHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhc
Q 000957 1087 YKVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLN---CGILALDEPTTNLDGPNAESLAAALHRIMEDRK 1160 (1209)
Q Consensus 1087 ~~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~---~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~ 1160 (1209)
..++..++... ...++.|||||+| |++||++|+.+ |++|||||||+|||+.++..|..+|..+.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQ------Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~---- 895 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQ------RVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV---- 895 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHH------HHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHH----
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHH------HHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH----
Confidence 34556666543 3456899999999 99999999976 49999999999999999999999999883
Q ss_pred cCCCcEEEEEecCHHHHHHhhhHhhhh------cCcEEeecCCcccccc
Q 000957 1161 GQENFQLIVITHDERFAQLIGQRQHAE------KYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1161 ~~~~~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~~~~s~~~ 1203 (1209)
..|.+|||||||++++ .+||+++.+ +.|+|+..|++..++.
T Consensus 896 -~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 896 -DNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp -HTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred -hCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 3588999999999998 479999888 6899998887766554
No 69
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.36 E-value=6e-13 Score=152.07 Aligned_cols=90 Identities=30% Similarity=0.402 Sum_probs=75.6
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccC-CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLN-CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~-~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
+..|||||+++++|++++++|++++.+ ||+|+|||||++||+.++..|...|..+ . .+.|||+|||++.+. .
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-----~-~~~~vi~~th~~~~~-~ 350 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV-----K-SIPQMIIITHHRELE-D 350 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-----C-SCSEEEEEESCGGGG-G
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-----c-cCCeEEEEEChHHHH-h
Confidence 357999999999999999999999999 9999999999999999999999998875 2 346999999998753 3
Q ss_pred hhhHhhhhcCcEEeecCCcccccc
Q 000957 1180 IGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1180 ~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
.+++.+.|.+.| +.|.|.
T Consensus 351 -----~~d~~~~l~k~~-~~s~v~ 368 (371)
T 3auy_A 351 -----VADVIINVKKDG-NVSKVK 368 (371)
T ss_dssp -----GCSEEEEEEESS-SCEEEE
T ss_pred -----hCCEEEEEEecC-CeEEEE
Confidence 566677777766 556554
No 70
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.36 E-value=2.5e-13 Score=178.89 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=111.1
Q ss_pred cHHHHHHHHhhhcccc--cCCcchhhhhhccCCccccchhHHHHHH---------HHcCCcc---c-cccCCCChhhhhh
Q 000957 1047 KMEEINKIIRELWQQT--YRGQDIDYIRIHSDSEGAGTRSYSYKVL---------MQTGDAE---L-EMRGRCSAGQKVL 1111 (1209)
Q Consensus 1047 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~-~~~~~lSgG~k~l 1111 (1209)
....+++.+++++|.+ |.||..++|.+...... ......++ ..++... . +....|||||||
T Consensus 486 ~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~---~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQ- 561 (1321)
T 4f4c_A 486 NLEFLRKNVAVVSQEPALFNCTIEENISLGKEGIT---REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ- 561 (1321)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCC---HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHH-
T ss_pred cHHHHhhcccccCCcceeeCCchhHHHhhhcccch---HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHH-
Confidence 4567888999999998 69999999987542211 11222222 2222111 1 222479999999
Q ss_pred hhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcE
Q 000957 1112 ASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1112 ~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~ 1191 (1209)
|+|||||++.+|++|+|||||++||+.+...+.+.|..+. .|.|+|+|||++.++. .||+++++..|+
T Consensus 562 -----RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~------~~~T~iiiaHrls~i~-~aD~Iivl~~G~ 629 (1321)
T 4f4c_A 562 -----RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA------KGRTTIIIAHRLSTIR-NADLIISCKNGQ 629 (1321)
T ss_dssp -----HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH------TTSEEEEECSCTTTTT-TCSEEEEEETTE
T ss_pred -----HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh------CCCEEEEEcccHHHHH-hCCEEEEeeCCe
Confidence 9999999999999999999999999999999999998873 5789999999999885 699999999999
Q ss_pred EeecCCccccccc
Q 000957 1192 VAKDDHQHSIIEA 1204 (1209)
Q Consensus 1192 v~~~~~~~s~~~~ 1204 (1209)
|+..|+..+.+..
T Consensus 630 ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 630 VVEVGDHRALMAQ 642 (1321)
T ss_dssp EEEEECHHHHHTT
T ss_pred eeccCCHHHHHHh
Confidence 9999987766543
No 71
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.35 E-value=6.2e-13 Score=163.63 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=87.4
Q ss_pred HHHHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc
Q 000957 1088 KVLMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLN---CGILALDEPTTNLDGPNAESLAAALHRIMEDRKG 1161 (1209)
Q Consensus 1088 ~~~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~---~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~ 1161 (1209)
.++..++... ...++.|||||+| |++||++|+.+ |++|||||||+|||+.++..|..+|..+.
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQ------Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~----- 913 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQ------RVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLV----- 913 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHH------HHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCCcccccCccccCCHHHHH------HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-----
Confidence 4555566543 3456899999999 99999999976 49999999999999999999999999883
Q ss_pred CCCcEEEEEecCHHHHHHhhhHhhhh------cCcEEeecCCcccccc
Q 000957 1162 QENFQLIVITHDERFAQLIGQRQHAE------KYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1162 ~~~~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~~~~s~~~ 1203 (1209)
..|.+|||||||++++ .+||+++.+ +.|+|+..|++..++.
T Consensus 914 ~~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 914 DKGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp HTTCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred hCCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 3588999999999998 579999888 6899998887766543
No 72
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.34 E-value=4.6e-12 Score=148.27 Aligned_cols=78 Identities=24% Similarity=0.326 Sum_probs=68.6
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhh
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIG 1181 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~ 1181 (1209)
|||||++ |++||++|+.+| ++|||||||+|||+.++..|.++|..+ . .|.||||||||+.++. +|
T Consensus 296 lSgGe~q------rl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l-----~-~~~~vi~itH~~~~~~-~~ 362 (415)
T 4aby_A 296 ASGGELS------RVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL-----A-DTRQVLVVTHLAQIAA-RA 362 (415)
T ss_dssp SCHHHHH------HHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH-----T-TTSEEEEECSCHHHHT-TC
T ss_pred cCHhHHH------HHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-----h-CCCEEEEEeCcHHHHh-hc
Confidence 6999999 999999999999 999999999999999999999999988 3 5889999999998875 67
Q ss_pred hHhhhh----cCcEEee
Q 000957 1182 QRQHAE----KYYRVAK 1194 (1209)
Q Consensus 1182 ~~~~~~----~~~~v~~ 1194 (1209)
|++++. ..|++..
T Consensus 363 d~i~~l~k~~~~G~~~~ 379 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVS 379 (415)
T ss_dssp SEEEEEEEEEETTEEEE
T ss_pred CeEEEEEEeccCCceEE
Confidence 777766 5555543
No 73
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.33 E-value=1.1e-12 Score=160.89 Aligned_cols=102 Identities=23% Similarity=0.250 Sum_probs=86.5
Q ss_pred HHHcCCcc---ccccCCCChhhhhhhhHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCC
Q 000957 1090 LMQTGDAE---LEMRGRCSAGQKVLASLIIRLALAETFCLNC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQEN 1164 (1209)
Q Consensus 1090 ~~~~~~~~---~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~ 1164 (1209)
+..+|... ...++.|||||+| |++||++|+.+| .+|||||||++|||..+..|..+|+.+ ...|
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQ------RV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L-----r~~G 556 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQ------RIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM-----RDLG 556 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHH------HHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH-----HTTT
T ss_pred hhhCCCCccccCCccccCCHHHHH------HHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH-----HhCC
Confidence 44556542 3455899999999 999999999874 899999999999999999999999998 3468
Q ss_pred cEEEEEecCHHHHHHhhhHhhhh------cCcEEeecCCcccccc
Q 000957 1165 FQLIVITHDERFAQLIGQRQHAE------KYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1165 ~~~i~itH~~~~~~~~~~~~~~~------~~~~v~~~~~~~s~~~ 1203 (1209)
.||||||||++++. .||+++.+ +-|+|+..|++..+..
T Consensus 557 ~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 557 NTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp CEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred CEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999999986 69998888 7889999987766543
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=2.4e-12 Score=144.00 Aligned_cols=89 Identities=29% Similarity=0.288 Sum_probs=72.1
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFC----LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~----~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.++.|||||++ |++||++|+ .+|++|+|||||++||+.++..|..+|..+ . .|.|||+|||+..
T Consensus 216 ~~~~lS~Gq~q------~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-----~-~~~~vi~~tH~~~ 283 (322)
T 1e69_A 216 KLSLLSGGEKA------LVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-----S-KHTQFIVITHNKI 283 (322)
T ss_dssp BGGGSCHHHHH------HHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-----T-TTSEEEEECCCTT
T ss_pred chhhCCHHHHH------HHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-----c-CCCeEEEEECCHH
Confidence 34689999999 999999886 689999999999999999999999999886 2 4789999999976
Q ss_pred HHHHhhhHhhhhcCcEEeecCCcccccccccc
Q 000957 1176 FAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEI 1207 (1209)
Q Consensus 1176 ~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~~~ 1207 (1209)
++. .++..++|...+ |.|.+....+
T Consensus 284 ~~~------~~d~~~~v~~~~-g~s~~~~~~~ 308 (322)
T 1e69_A 284 VME------AADLLHGVTMVN-GVSAIVPVEV 308 (322)
T ss_dssp GGG------GCSEEEEEEESS-SCEEEEECCC
T ss_pred HHh------hCceEEEEEEeC-CEEEEEEEEc
Confidence 554 456555676665 6777665543
No 75
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.29 E-value=1.3e-12 Score=160.69 Aligned_cols=92 Identities=22% Similarity=0.267 Sum_probs=80.2
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccC--CCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLN--CGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~--~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
..++.|||||+| |++||++|+.+ |.+|||||||++||+..+..|..+|+.+ ...|.||||||||+++
T Consensus 517 r~~~tLSGGEkQ------RV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L-----r~~G~TVIvVeHdl~~ 585 (993)
T 2ygr_A 517 RAAATLSGGEAQ------RIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRL-----RDLGNTLIVVEHDEDT 585 (993)
T ss_dssp CBGGGCCHHHHH------HHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHH-----HHTTCEEEEECCCHHH
T ss_pred CCcccCCHHHHH------HHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHH-----HHcCCEEEEECCCHHH
Confidence 345789999999 99999999988 5899999999999999999999999998 3468899999999999
Q ss_pred HHHhhhHhhhh------cCcEEeecCCccccc
Q 000957 1177 AQLIGQRQHAE------KYYRVAKDDHQHSII 1202 (1209)
Q Consensus 1177 ~~~~~~~~~~~------~~~~v~~~~~~~s~~ 1202 (1209)
+. .||+++.+ +-|+|+..|++..+.
T Consensus 586 i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 586 IE-HADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp HH-TCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred HH-hCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 86 79998887 678888888765543
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.27 E-value=3.8e-12 Score=156.42 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=81.5
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
..++.|||||+| |++||++|+.+| .+|||||||++||+..+..|..+|..+ ...|.+|||||||+++
T Consensus 375 r~~~tLSGGe~Q------RV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L-----~~~G~TVIvVeHdl~~ 443 (842)
T 2vf7_A 375 RSTPTLSPGELQ------RLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL-----KRGGNSLFVVEHDLDV 443 (842)
T ss_dssp CBGGGSCHHHHH------HHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH-----HTTTCEEEEECCCHHH
T ss_pred CCcCcCCHHHHH------HHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH-----HHcCCEEEEEcCCHHH
Confidence 445789999999 999999999998 599999999999999999999999988 3468899999999998
Q ss_pred HHHhhhHhhhh------cCcEEeecCCcccccc
Q 000957 1177 AQLIGQRQHAE------KYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1177 ~~~~~~~~~~~------~~~~v~~~~~~~s~~~ 1203 (1209)
+. .||+++.+ +-|+|+..|++..+..
T Consensus 444 l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 444 IR-RADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HT-TCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HH-hCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 75 69998888 6788888887766543
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.12 E-value=2.3e-10 Score=127.87 Aligned_cols=81 Identities=17% Similarity=0.029 Sum_probs=69.2
Q ss_pred CCChhhhhhhhHHHHHHHHHHhc---------cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecC
Q 000957 1103 RCSAGQKVLASLIIRLALAETFC---------LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHD 1173 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~---------~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~ 1173 (1209)
.|||||++ |++||++|+ .+||+|+|||||++||+.++..|.+.|..+ . .+||++||.
T Consensus 265 ~lS~Gqqq------~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~-----~---qt~i~~th~ 330 (359)
T 2o5v_A 265 YASRGEGR------TVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV-----P---QAIVTGTEL 330 (359)
T ss_dssp HCCHHHHH------HHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS-----S---EEEEEESSC
T ss_pred hCCHHHHH------HHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc-----C---cEEEEEEec
Confidence 79999999 777777776 899999999999999999999999988775 2 588999995
Q ss_pred HHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1174 ERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1174 ~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
. . +|++++....|+|...|++..+
T Consensus 331 ~-~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 331 A-P---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp C-T---TCSEEEEEETTEEEECCCTTTS
T ss_pred c-c---cCCEEEEEECCEEEecCCHHHH
Confidence 3 3 8899999999999998876654
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.07 E-value=1.4e-11 Score=123.91 Aligned_cols=70 Identities=10% Similarity=0.173 Sum_probs=59.3
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhH----------------HHHHHHHHHHHHhhccC
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNA----------------ESLAAALHRIMEDRKGQ 1162 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~----------------~~~~~~l~~~~~~~~~~ 1162 (1209)
+.....|||++| |++||++++.+|++|+|||||++||+.+. ..|...|..+ ..
T Consensus 79 ~~~~~~s~g~~q------rv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l-----~~ 147 (171)
T 4gp7_A 79 DATNVQESARKP------LIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGL-----QR 147 (171)
T ss_dssp ESCCCSHHHHHH------HHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTH-----HH
T ss_pred ECCCCCHHHHHH------HHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhH-----Hh
Confidence 344567999999 99999999999999999999999999944 6667766665 23
Q ss_pred CCcEEEEEecCHHHHHH
Q 000957 1163 ENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1163 ~~~~~i~itH~~~~~~~ 1179 (1209)
.|+++|+||||++++..
T Consensus 148 ~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 148 EGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HTCSEEEEECSHHHHHH
T ss_pred cCCcEEEEeCCHHHhhh
Confidence 48999999999999874
No 79
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.03 E-value=1e-10 Score=117.73 Aligned_cols=71 Identities=8% Similarity=0.069 Sum_probs=59.0
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHH-----hccCCCeEEEeC--CCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEe
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAET-----FCLNCGILALDE--PTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVIT 1171 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~-----~~~~~~~l~lDE--p~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~it 1171 (1209)
.++..|||||++ |++||++ ++.+|++|+||| ||++||+.....+..+|.. .+.++|++|
T Consensus 72 ~~~~~lSgG~~q------r~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--------~~~~~i~~~ 137 (178)
T 1ye8_A 72 SYGVNVQYFEEL------AIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--------PNVNVVATI 137 (178)
T ss_dssp TEEECHHHHHHH------HHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--------TTSEEEEEC
T ss_pred ccccCcCHHHHH------HHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--------CCCeEEEEE
Confidence 345679999999 9999996 999999999999 9999999888777665542 456677777
Q ss_pred ---cCHHHHHHhhhH
Q 000957 1172 ---HDERFAQLIGQR 1183 (1209)
Q Consensus 1172 ---H~~~~~~~~~~~ 1183 (1209)
||..++..+|++
T Consensus 138 H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 138 PIRDVHPLVKEIRRL 152 (178)
T ss_dssp CSSCCSHHHHHHHTC
T ss_pred ccCCCchHHHHHHhc
Confidence 599999988765
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.8e-10 Score=133.53 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=72.5
Q ss_pred HHcCCccccccCCCChhhhhhhhHHHHHHHHHH--hccCCCe----EEEeC-CCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1091 MQTGDAELEMRGRCSAGQKVLASLIIRLALAET--FCLNCGI----LALDE-PTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1091 ~~~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~--~~~~~~~----l~lDE-p~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
..+|......+..|||||+| |++||++ |+.+|++ ||||| ||++||+. ...|..++.. .
T Consensus 223 ~~~gl~~~~~~~~LSgGq~q------rlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--------~ 287 (460)
T 2npi_A 223 KNFGLERINENKDLYLECIS------QLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--------L 287 (460)
T ss_dssp CCCCSSSGGGCHHHHHHHHH------HHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH--------T
T ss_pred HHhCCCcccchhhhhHHHHH------HHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH--------h
Confidence 33454433236789999999 9999999 9999999 99999 99999998 4444443333 2
Q ss_pred CcEEEEEecCHH------HHHHhhhH-----hhhhc-CcEEeecCCcc
Q 000957 1164 NFQLIVITHDER------FAQLIGQR-----QHAEK-YYRVAKDDHQH 1199 (1209)
Q Consensus 1164 ~~~~i~itH~~~------~~~~~~~~-----~~~~~-~~~v~~~~~~~ 1199 (1209)
|.++|||||+.. ++..+||+ ++.+. .|+|. .++..
T Consensus 288 ~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~ 334 (460)
T 2npi_A 288 NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV 334 (460)
T ss_dssp TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence 568999999988 88899999 88887 88887 66543
No 81
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.74 E-value=4e-05 Score=83.84 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 000957 941 FASEIESLE 949 (1209)
Q Consensus 941 l~~ei~~l~ 949 (1209)
+..++..+.
T Consensus 270 ~~~~~~~~~ 278 (284)
T 1c1g_A 270 ISEELDHAL 278 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 82
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.58 E-value=5.9e-08 Score=126.71 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 000957 653 IPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKA 686 (1209)
Q Consensus 653 l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~ 686 (1209)
+..++.++..+...+..+...+.++...+..+..
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~ 892 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCE 892 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333
No 83
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.55 E-value=5.9e-09 Score=107.43 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=44.3
Q ss_pred hhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1107 GQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1107 G~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
||+| |++||++|+.+|++|||||||++ ++..+..+|..+ ..|.+|| ||||+.++...
T Consensus 108 Gq~q------rv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l------~~g~tii-vtHd~~~~~~~ 164 (208)
T 3b85_A 108 VEVA------PLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL------GFGSKMV-VTGDITQVDLP 164 (208)
T ss_dssp EEEE------EGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB------CTTCEEE-EEEC-------
T ss_pred chHH------HHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh------cCCCEEE-EECCHHHHhCc
Confidence 9999 99999999999999999999999 777777776654 2478999 99999988743
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.44 E-value=2.8e-08 Score=118.87 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=70.7
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHH-----hHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGP-----NAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~-----~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
.+..|||||++ |+++|+++..+|+++||| ||++||+. .+..+..++..+ ...|.++|+|||+.
T Consensus 350 ~p~~LS~g~~q------~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l-----~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 350 YPESAGLEDHL------QIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYA-----KQEEITGLFTNTSD 417 (525)
T ss_dssp CGGGSCHHHHH------HHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHH-----HHTTCEEEEEEECS
T ss_pred ccccCCHHHHH------HHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHH-----HhCCCEEEEEECcc
Confidence 34679999999 999999999999999999 99999999 888888888776 34589999999999
Q ss_pred ----------HHHHHhhhHhhhhcCcE
Q 000957 1175 ----------RFAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1175 ----------~~~~~~~~~~~~~~~~~ 1191 (1209)
.++..+||+++.++.+.
T Consensus 418 ~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 418 QFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred cccCcccccCcccceeeeEEEEEEEEE
Confidence 88888999988877765
No 85
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.35 E-value=1.1e-07 Score=97.91 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=77.2
Q ss_pred Cccc-cccccccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCCCchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000957 18 GEKV-CLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQE 96 (1209)
Q Consensus 18 g~~~-~~s~k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~ 96 (1209)
|++. .+++++.|++..|..+||+ .++.+++||||+++.|+|..++.+++.|++|||+..|.++.+.+++.+++...+
T Consensus 106 g~~~~~~~~~~~~v~~~i~~ll~~--~~f~~~~~l~Qg~~~~~l~~~~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~ 183 (203)
T 3qks_A 106 NEWKHVTEPSSKAISAFMEKLIPY--NIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTINNR 183 (203)
T ss_dssp TEEEESSCSSHHHHHHHHHHHSCH--HHHHHTTEECTTHHHHHHHCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred CceeeeccCChHHHHHHHHHHcCH--HHhhEEEEEcCCcHHHHHhCcHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 5443 5667889999999999765 899999999999999999988999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 000957 97 IKTYKLKLEN 106 (1209)
Q Consensus 97 lK~~~~~l~~ 106 (1209)
++.++..+..
T Consensus 184 ~~~l~~~~~~ 193 (203)
T 3qks_A 184 IKEYRDILAR 193 (203)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 8887766554
No 86
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.31 E-value=1.1e-07 Score=107.96 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=72.1
Q ss_pred HHHHHHHcCCccccccCCCChh--hhhhhhHHHHHHHHHHhcc----------CCCeEEEeCCCCCCCHHhHHHHHHHHH
Q 000957 1086 SYKVLMQTGDAELEMRGRCSAG--QKVLASLIIRLALAETFCL----------NCGILALDEPTTNLDGPNAESLAAALH 1153 (1209)
Q Consensus 1086 ~~~~~~~~~~~~~~~~~~lSgG--~k~l~sl~ir~~la~~~~~----------~~~~l~lDEp~~~LD~~~~~~~~~~l~ 1153 (1209)
...++..++....+..-.+||| |++ |++||++|.+ +|++++|||||+|||+.++..+...|.
T Consensus 137 ~~~~L~~~~L~~~~~~~~lS~G~~~kq------rv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~ 210 (413)
T 1tq4_A 137 PDTYLEKMKFYEYDFFIIISATRFKKN------DIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR 210 (413)
T ss_dssp HHHHHHHTTGGGCSEEEEEESSCCCHH------HHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCccCCeEEeCCCCccHH------HHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHH
Confidence 4456666665443322239999 999 9999999999 999999999999999999999999999
Q ss_pred HHHHhh---c-cCCCcEEEEEecCHHH--HHHhhhHhh
Q 000957 1154 RIMEDR---K-GQENFQLIVITHDERF--AQLIGQRQH 1185 (1209)
Q Consensus 1154 ~~~~~~---~-~~~~~~~i~itH~~~~--~~~~~~~~~ 1185 (1209)
.+.... . ......|+|+||+... ++.+|+++.
T Consensus 211 ~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 211 LNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 885210 0 1123568889998887 888888764
No 87
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.29 E-value=8.5e-07 Score=115.85 Aligned_cols=73 Identities=10% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHH
Q 000957 886 KKSQSESEVKSCKIRTDEILVELDRFKDIVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETEL 965 (1209)
Q Consensus 886 ~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~~~~~~~~~e~ 965 (1209)
.+......+..++.++..++.++..+..++..... .+.........+..++..|..++.+++.++.++.+.
T Consensus 1103 ~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~---------~~~~le~q~~~L~~ele~L~~~Ieel~~vn~aq~el 1173 (1184)
T 1i84_S 1103 RLEDETSQKNNALKKIRELESHISDLQEDLESEKA---------ARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333344444444444444444444444332211 122334456677888888999999999877655444
Q ss_pred HH
Q 000957 966 GK 967 (1209)
Q Consensus 966 ~~ 967 (1209)
++
T Consensus 1174 ~~ 1175 (1184)
T 1i84_S 1174 RG 1175 (1184)
T ss_dssp --
T ss_pred Hh
Confidence 33
No 88
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.28 E-value=6.9e-07 Score=111.69 Aligned_cols=89 Identities=12% Similarity=0.039 Sum_probs=67.0
Q ss_pred CCCChhhhhhhhHHHHHHHHHHh--ccCCCeEEEeCCCCCCCHHhHHHHHH-HHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETF--CLNCGILALDEPTTNLDGPNAESLAA-ALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~--~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
..+|+|+.. +..++.++ +.+|+++||||||+|||+.....++. ++..+. ...|.++|++||+.+++
T Consensus 720 ~~lStf~~e------~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~----~~~g~~vl~aTH~~el~- 788 (934)
T 3thx_A 720 KGVSTFMAE------MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIA----TKIGAFCMFATHFHELT- 788 (934)
T ss_dssp ---CHHHHH------HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHH----HTTCCEEEEEESCGGGG-
T ss_pred HhHhhhHHH------HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hcCCCEEEEEcCcHHHH-
Confidence 457888887 66666666 79999999999999999999888844 444442 23588999999998776
Q ss_pred HhhhHhhhhcCcEEeecCCcccc
Q 000957 1179 LIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1179 ~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
.+|++......|.|...+++..+
T Consensus 789 ~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 789 ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp GGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHhcccceeEeeEEEEEecCCcE
Confidence 58888888888888876655443
No 89
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.14 E-value=1.6e-06 Score=107.94 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=56.9
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHH-HHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLA-AALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~-~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
++.+|||+++ +..++++ +.+|+++||||||+|||+.....++ .++..+. ...|.++|++||+.+++.
T Consensus 733 ~stfs~em~~------~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~----~~~g~tvl~vTH~~el~~- 800 (918)
T 3thx_B 733 RSTFMEELTD------TAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI----RDVKSLTLFVTHYPPVCE- 800 (918)
T ss_dssp -CCHHHHHHH------HHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH----HTTCCEEEEECSCGGGGG-
T ss_pred HHHhhHHHHH------HHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----HhcCCeEEEEeCcHHHHH-
Confidence 3578999999 6666666 7899999999999999999999887 5555552 235889999999998774
Q ss_pred hhhHh
Q 000957 1180 IGQRQ 1184 (1209)
Q Consensus 1180 ~~~~~ 1184 (1209)
+|++.
T Consensus 801 l~~~~ 805 (918)
T 3thx_B 801 LEKNY 805 (918)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 55553
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.98 E-value=5e-06 Score=105.53 Aligned_cols=80 Identities=10% Similarity=0.015 Sum_probs=62.6
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhH-HHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNA-ESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~-~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
+.+|+|+. +++++++++.+|+++||||||+|+|+... ..++..|..+. ...|.++|++||+.+++..+
T Consensus 850 stf~~em~-------~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~----~~~g~~vl~~TH~~el~~~~ 918 (1022)
T 2o8b_B 850 STFFVELS-------ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA----ETIKCRTLFSTHYHSLVEDY 918 (1022)
T ss_dssp CHHHHHHH-------HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH----HTSCCEEEEECCCHHHHHHT
T ss_pred hhhHHHHH-------HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH----hcCCCEEEEEeCCHHHHHHh
Confidence 34666654 46788888999999999999999999885 44667777662 22478999999999999999
Q ss_pred hhHhhhhcCcEEe
Q 000957 1181 GQRQHAEKYYRVA 1193 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~ 1193 (1209)
|+++.+. .|+|.
T Consensus 919 ~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 919 SQNVAVR-LGHMA 930 (1022)
T ss_dssp SSCSSEE-EEEEE
T ss_pred CCcceee-cCeEE
Confidence 9887765 35665
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.93 E-value=8e-07 Score=92.26 Aligned_cols=61 Identities=13% Similarity=-0.005 Sum_probs=52.9
Q ss_pred HhccCCCeEEEeCCCCCC----CHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhh
Q 000957 1123 TFCLNCGILALDEPTTNL----DGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAE 1187 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~L----D~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~ 1187 (1209)
+|+.+|++++|||||++| |+..+..|..++.++. ...|+++|+||||++.+..+||+++++
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~----~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELA----AQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH----GGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----hhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 677899999999999998 7778899999888873 335789999999999999999998875
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.85 E-value=6.7e-06 Score=90.71 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCCChhh-hhhhhHHHHHHHHHHhccCCCeEEEeCCCC---C---CCH-HhHHHHHHHHHHHHHhhccCCCcEEEEEecC
Q 000957 1102 GRCSAGQ-KVLASLIIRLALAETFCLNCGILALDEPTT---N---LDG-PNAESLAAALHRIMEDRKGQENFQLIVITHD 1173 (1209)
Q Consensus 1102 ~~lSgG~-k~l~sl~ir~~la~~~~~~~~~l~lDEp~~---~---LD~-~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~ 1173 (1209)
+.+|.|+ ++ ++. ++++..+|+++||||||+ + +|+ ..+..+...|+.+. ...|.+||+|||+
T Consensus 128 ~~~~~~~l~~------~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la----~~~~~~vi~vsh~ 196 (296)
T 1cr0_A 128 AEAETDRLLA------KLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFA----KSTGVVLVVICHL 196 (296)
T ss_dssp CSCCHHHHHH------HHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHH----HHHCCEEEEEEEC
T ss_pred CCCCHHHHHH------HHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHH----HHhCCeEEEEEec
Confidence 4688888 44 444 778889999999999999 5 455 66677888888773 2347899999999
Q ss_pred H--H--------------------HHHHhhhHhhhhcCcEE
Q 000957 1174 E--R--------------------FAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1174 ~--~--------------------~~~~~~~~~~~~~~~~v 1192 (1209)
. . .+..+||.+++++.++.
T Consensus 197 ~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 197 KNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp C-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 4 4 78888998888876654
No 93
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.84 E-value=1.1e-05 Score=89.52 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=53.4
Q ss_pred hhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhh
Q 000957 1106 AGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQH 1185 (1209)
Q Consensus 1106 gG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~ 1185 (1209)
||+++ |++|+++|..+|++++|||||+. .+..+|..+ ...+.++|+|||+.. +...|+++.
T Consensus 225 gg~~~------r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~-----~~g~~tvi~t~H~~~-~~~~~dri~ 285 (330)
T 2pt7_A 225 GNITS------ADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVL-----CSGHKGTLTTLHAGS-SEEAFIRLA 285 (330)
T ss_dssp TTBCH------HHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHH-----HTTCCCEEEEEECSS-HHHHHHHHH
T ss_pred CChhH------HHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHH-----hcCCCEEEEEEcccH-HHHHhhhhe
Confidence 89999 99999999999999999999982 244556555 223457999999999 667888888
Q ss_pred hhcCcE
Q 000957 1186 AEKYYR 1191 (1209)
Q Consensus 1186 ~~~~~~ 1191 (1209)
.+..|.
T Consensus 286 ~l~~g~ 291 (330)
T 2pt7_A 286 NMSSSN 291 (330)
T ss_dssp HHHHTS
T ss_pred ehhcCC
Confidence 776654
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.77 E-value=1.5e-05 Score=84.55 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCC--eEEEeCCCCCC--CHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH----
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCG--ILALDEPTTNL--DGPNAESLAAALHRIMEDRKGQENFQLIVITHDE---- 1174 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~--~l~lDEp~~~L--D~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~---- 1174 (1209)
..|+|+.. +.+.+.+...+|+ ++||||||+++ |+.....+...|..+. ...|.++|+|||+.
T Consensus 103 ~~~~~~~~------~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~----~~~~~~vi~~~h~~~~~~ 172 (235)
T 2w0m_A 103 NLTPEELV------NKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVL----NKWNFTIYATSQYAITTS 172 (235)
T ss_dssp SCCHHHHH------HHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH----HHTTEEEEEEEC------
T ss_pred CCCHHHHH------HHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH----HhCCCeEEEEeccCcccc
Confidence 34888866 5555555557899 99999999888 9999999999998884 23578999999999
Q ss_pred ----HHHHHhhhHhhhhcCc
Q 000957 1175 ----RFAQLIGQRQHAEKYY 1190 (1209)
Q Consensus 1175 ----~~~~~~~~~~~~~~~~ 1190 (1209)
..+..+||+++..+..
T Consensus 173 ~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 173 QAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp -----CHHHHCSEEEEEEEE
T ss_pred cccccchheeeeEEEEEEEE
Confidence 4588888877766543
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.72 E-value=2.5e-05 Score=95.94 Aligned_cols=64 Identities=25% Similarity=0.246 Sum_probs=51.7
Q ss_pred CCChhhhhhhhHHHHHHHHHHh--ccCCCeEEEeCC---CCCCCHHhH-HHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1103 RCSAGQKVLASLIIRLALAETF--CLNCGILALDEP---TTNLDGPNA-ESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~--~~~~~~l~lDEp---~~~LD~~~~-~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
.+|+|+.+ ++.++.++ +.+|++++|||| |++||+.+. ..+.+.|.+ .|.++|++||+.++
T Consensus 635 g~S~~~~e------~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--------~g~~vl~~TH~~~l 700 (765)
T 1ewq_A 635 GKSTFMVE------MEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--------RRAYTLFATHYFEL 700 (765)
T ss_dssp CCSHHHHH------HHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--------HTCEEEEECCCHHH
T ss_pred cccHHHHH------HHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--------CCCEEEEEeCCHHH
Confidence 47899999 77777777 899999999999 999999876 356665543 36799999999988
Q ss_pred HHHhh
Q 000957 1177 AQLIG 1181 (1209)
Q Consensus 1177 ~~~~~ 1181 (1209)
+. +|
T Consensus 701 ~~-~~ 704 (765)
T 1ewq_A 701 TA-LG 704 (765)
T ss_dssp HT-CC
T ss_pred HH-hh
Confidence 75 44
No 96
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.68 E-value=9.6e-07 Score=92.25 Aligned_cols=85 Identities=12% Similarity=0.075 Sum_probs=67.8
Q ss_pred CCCChhhhhhhhHHHHHHH-----HHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC--CCcEEEEEecCH
Q 000957 1102 GRCSAGQKVLASLIIRLAL-----AETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ--ENFQLIVITHDE 1174 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~l-----a~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~--~~~~~i~itH~~ 1174 (1209)
..+||||++ |++| +++|+.+|++++|||||+++|..+...+...|......+... .++..|+++||.
T Consensus 121 ~~lsggq~q------R~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~ 194 (218)
T 1z6g_A 121 MNINGVKQL------KKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL 194 (218)
T ss_dssp ECHHHHHHH------TTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH
T ss_pred ecHHHHHHH------HHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH
Confidence 468999999 8888 788999999999999999999999888888887664332111 467899999999
Q ss_pred HHHHHhhhHhhhhcCcEE
Q 000957 1175 RFAQLIGQRQHAEKYYRV 1192 (1209)
Q Consensus 1175 ~~~~~~~~~~~~~~~~~v 1192 (1209)
+.+...++.++.....++
T Consensus 195 ~ea~~~~~~ii~~~~~~~ 212 (218)
T 1z6g_A 195 TLTYQQLKNYLLNSYIHL 212 (218)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999888887776554443
No 97
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.60 E-value=3.9e-05 Score=94.85 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=58.4
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHH-HHHHHHHHHhhccCCCcEEEEEecCHHHHHHhh
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESL-AAALHRIMEDRKGQENFQLIVITHDERFAQLIG 1181 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~ 1181 (1209)
.+|+|++. ++.+...+.+|++++|||||+|+|+.....+ ...|..+. ...|.++|++||+.+++. +|
T Consensus 669 tf~~e~~~-------~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~----~~~g~~vl~~TH~~el~~-l~ 736 (800)
T 1wb9_A 669 TFMVEMTE-------TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLA----NKIKALTLFATHYFELTQ-LP 736 (800)
T ss_dssp -CHHHHHH-------HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHH----HTTCCEEEEECSCGGGGG-HH
T ss_pred hhhHHHHH-------HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHH----hccCCeEEEEeCCHHHHH-Hh
Confidence 45666655 2223335789999999999999999877776 55565552 224789999999998764 78
Q ss_pred hHhhhhcCcEEeecC
Q 000957 1182 QRQHAEKYYRVAKDD 1196 (1209)
Q Consensus 1182 ~~~~~~~~~~v~~~~ 1196 (1209)
++......|.+..+.
T Consensus 737 d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 737 EKMEGVANVHLDALE 751 (800)
T ss_dssp HHSTTEEEEEEEEEE
T ss_pred hhhhceEEEEEEEEE
Confidence 876666667666554
No 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.50 E-value=5.8e-05 Score=82.27 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=47.3
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCC--CCCHHhH---HHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTT--NLDGPNA---ESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~--~LD~~~~---~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
.+..||+|+.+ ++ ++++.+|+++||||||+ ++|+... ..+...|..+.+ ..|.+||+|||+.
T Consensus 115 ~~~~ls~g~~~------~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~----~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 115 LPNIMAPEWFD------GL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAA----DTGCSIVFLHHAS 181 (279)
T ss_dssp CCCTTSHHHHH------HH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHH----HHCCEEEEEEEC-
T ss_pred CcccCCHHHHH------HH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHH----HcCCEEEEEecCC
Confidence 34679999966 33 35567899999999999 9998655 677777777642 3478999999998
Q ss_pred HHHH
Q 000957 1175 RFAQ 1178 (1209)
Q Consensus 1175 ~~~~ 1178 (1209)
....
T Consensus 182 ~~~~ 185 (279)
T 1nlf_A 182 KGAA 185 (279)
T ss_dssp ----
T ss_pred Cccc
Confidence 8764
No 99
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.46 E-value=0.011 Score=62.43 Aligned_cols=73 Identities=11% Similarity=0.176 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 701 ADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRW 774 (1209)
Q Consensus 701 i~~l~~ei~~l~~ei~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~ 774 (1209)
+.++..+|..+...+...+..+.... ....+..++.+++.+..++..+..++..+...+..+...+..+...+
T Consensus 62 ~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777777777777777775544 45555556666655555555555555555555544444444444333
No 100
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.45 E-value=2.7e-05 Score=86.75 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=67.0
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc-CCCc-----EEEEEec
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG-QENF-----QLIVITH 1172 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~-~~~~-----~~i~itH 1172 (1209)
+.+++||+|| + ++++| +++|++ |+||||.....+.+++..+ .. ..|. +|+++||
T Consensus 167 d~~~~lS~g~-r------~v~la---l~~p~~------t~Gldp~~~~~l~~ller~----~~~~~GsiT~~~tVl~~th 226 (347)
T 2obl_A 167 DSVTRYARAA-R------DVGLA---SGEPDV------RGGFPPSVFSSLPKLLERA----GPAPKGSITAIYTVLLESD 226 (347)
T ss_dssp ETHHHHHHHH-H------HHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTC----EECSSSEEEEEEEEECCSS
T ss_pred hhHHHHHHHH-H------HHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHH----hCCCCCCeeeEEEEEEeCC
Confidence 5567899999 8 78887 467776 9999999999988888766 22 3477 8999999
Q ss_pred CHHHHHHhhhHhhhhcCcEEeecCCcccc
Q 000957 1173 DERFAQLIGQRQHAEKYYRVAKDDHQHSI 1201 (1209)
Q Consensus 1173 ~~~~~~~~~~~~~~~~~~~v~~~~~~~s~ 1201 (1209)
|+. +.+||++.++..|+|+.+++...+
T Consensus 227 dl~--~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 227 NVN--DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CCC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred CCC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence 998 789999999999999998865554
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.43 E-value=2.6e-05 Score=83.70 Aligned_cols=59 Identities=12% Similarity=-0.052 Sum_probs=44.1
Q ss_pred ccCCCeEEEeCCCCCCC-----HHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH---------HHhh-hHhhhhc
Q 000957 1125 CLNCGILALDEPTTNLD-----GPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA---------QLIG-QRQHAEK 1188 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD-----~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~---------~~~~-~~~~~~~ 1188 (1209)
..+|++++|||||++|| +.....+..++..+ ...|.++|+|||+...+ ..+| |+++.+.
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l-----~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTIL-----LEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHH-----HHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHH-----HHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 47999999999999997 55555577777766 23589999999999998 5677 7766663
No 102
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.41 E-value=2.1e-05 Score=85.88 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecC
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCG--ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHD 1173 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~--~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~ 1173 (1209)
++.|| ++ |++||++++.+|+ +|+|| ||+|||+.+.. ..+. ...|.++|||||.
T Consensus 202 ~~eLS---kq------r~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~----~~~g~t~iiiThl 256 (302)
T 3b9q_A 202 MEELI---AC------KKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFN----EVVGITGLILTKL 256 (302)
T ss_dssp HHHHH---HH------HHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHH----HHTCCCEEEEECC
T ss_pred HHHHH---HH------HHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHH----HhcCCCEEEEeCC
Confidence 34678 77 9999999999999 99999 99999997542 2231 1247899999994
No 103
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.38 E-value=0.00022 Score=76.19 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=46.4
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhh
Q 000957 1116 IRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAE 1187 (1209)
Q Consensus 1116 ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~ 1187 (1209)
+|++|+++|..+|++|+||||| |+.+...+. ... ..|.++|++||+.+ +..+|++++.+
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~~------~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETAL---RAA------ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HHH------HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HHH------ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 3899999999999999999999 988865433 222 24789999999988 45677776554
No 104
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.32 E-value=0.00011 Score=76.90 Aligned_cols=79 Identities=11% Similarity=-0.022 Sum_probs=54.0
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccC-CCeEEEeCCCCCCCHHh--------HHHHHHHHHHHHHhhccCCCcEEEEEec
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLN-CGILALDEPTTNLDGPN--------AESLAAALHRIMEDRKGQENFQLIVITH 1172 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~-~~~l~lDEp~~~LD~~~--------~~~~~~~l~~~~~~~~~~~~~~~i~itH 1172 (1209)
..+|+|+.+.. +++.+++++.. |+++|+||||+++|+.. ...+...|..+. ...|.++|+|+|
T Consensus 83 ~~~~~~~~~~~----~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~----~~~~~~vi~~~h 154 (220)
T 2cvh_A 83 FTPSDFKEQRR----VIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIA----RKHNIPVIVINQ 154 (220)
T ss_dssp ECCTTTSHHHH----HHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHH----HHHTCCEEEEEC
T ss_pred EecCCHHHHHH----HHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHH----HHcCCEEEEEee
Confidence 45677764311 56667777765 99999999999999743 234455566653 234789999999
Q ss_pred CHH-------------HHHHhhhHhhhhc
Q 000957 1173 DER-------------FAQLIGQRQHAEK 1188 (1209)
Q Consensus 1173 ~~~-------------~~~~~~~~~~~~~ 1188 (1209)
... .+..+||.++..+
T Consensus 155 ~~~~~~~~~~~p~~~~~~~~~~d~vi~l~ 183 (220)
T 2cvh_A 155 VHFDSRTEMTKPVAEQTLGYRCKDILRLD 183 (220)
T ss_dssp SSSSCTTSSCCSCCCHHHHHTSSEEEEEE
T ss_pred EEEcCCCCccccCCCcceeecCcEEEEEE
Confidence 865 5677776655544
No 105
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.29 E-value=7.1e-05 Score=83.26 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecC
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCG--ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHD 1173 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~--~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~ 1173 (1209)
++.|| ++ |++||++|+.+|+ +|+|| ||+|||+.+.. ..+. ...|.++||+||.
T Consensus 259 ~~eLS---kq------r~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~----~~~g~t~iiiThl 313 (359)
T 2og2_A 259 MEELI---AC------KKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFN----EVVGITGLILTKL 313 (359)
T ss_dssp HHHHH---HH------HHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHH----HHTCCCEEEEESC
T ss_pred HHHHH---HH------HHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHH----HhcCCeEEEEecC
Confidence 34677 77 9999999999999 99999 99999997652 2221 1247899999994
No 106
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.28 E-value=5.3e-05 Score=87.20 Aligned_cols=83 Identities=14% Similarity=0.037 Sum_probs=67.5
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhcc---CCCc-----EEEEE
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKG---QENF-----QLIVI 1170 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~---~~~~-----~~i~i 1170 (1209)
+..++||||| | |++|| +.+||+ |+|||+.+...+.++|..+ .. ..|. +++++
T Consensus 254 d~l~~lS~g~-q------rvslA---l~~p~~------t~glD~~~~~~l~~ll~r~----~~~~~~~GsiT~~~tVlv~ 313 (438)
T 2dpy_A 254 DSLTRYAMAQ-R------EIALA---IGEPPA------TKGYPPSVFAKLPALVERA----GNGIHGGGSITAFYTVLTE 313 (438)
T ss_dssp ECHHHHHHHH-H------HHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTC----SCCSTTSCEEEEEEEEECS
T ss_pred HhHHHHHHHH-H------HHHHH---hCCCcc------cccCCHHHHHHHHHHHHHH----HhccCCCCcccceeEEEEe
Confidence 3456899999 8 88887 677877 9999999999999988776 22 1264 99999
Q ss_pred ecCHHHHHHhhhHhhhhcCcEEeecCCcccccc
Q 000957 1171 THDERFAQLIGQRQHAEKYYRVAKDDHQHSIIE 1203 (1209)
Q Consensus 1171 tH~~~~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 1203 (1209)
|||+. ..+||+++....|.|+.+++...+..
T Consensus 314 tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 314 GDDQQ--DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp SSCSC--CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred CCCcc--chhhceEEEEeCcEEEEeCCHHHccC
Confidence 99999 78899999999999999886655443
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.27 E-value=2.7e-05 Score=78.64 Aligned_cols=78 Identities=9% Similarity=0.069 Sum_probs=46.8
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeC--CCCCCCHHhHHHHHHHHHHHHHhhccCCCcEE---EEEecCH--H
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDE--PTTNLDGPNAESLAAALHRIMEDRKGQENFQL---IVITHDE--R 1175 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDE--p~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~---i~itH~~--~ 1175 (1209)
.+||||++...++-++| +|++.+|++||||| |+.++|+.... .|.+++.. ....| |+|||+. .
T Consensus 83 ~ls~~er~~~~~l~~~a--~A~~~~~dvlilDE~g~~~~~~~~~~~----~l~~~l~~----~~~~ilgti~vsh~~~~~ 152 (189)
T 2i3b_A 83 DLTSFEQLALPVLRNAD--CSSGPGQRVCVIDEIGKMELFSQLFIQ----AVRQTLST----PGTIILGTIPVPKGKPLA 152 (189)
T ss_dssp CHHHHHTTTTTTTCCCC--CCCSSCCCCEEECCCSTTTTTCSHHHH----HHHHHHHC----SSCCEEEECCCCCSSCCT
T ss_pred cchHHHHHHHHHHhhhh--HhhccCCCEEEEeCCCccccccHHHHH----HHHHHHhC----CCcEEEEEeecCCCCchH
Confidence 58999997322111111 25789999999999 88889986544 44555421 22233 2455987 6
Q ss_pred HHHHhhhHhhhhcCcEEee
Q 000957 1176 FAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1176 ~~~~~~~~~~~~~~~~v~~ 1194 (1209)
|++.++ ....++|..
T Consensus 153 ~vd~i~----~~~~~~i~~ 167 (189)
T 2i3b_A 153 LVEEIR----NRKDVKVFN 167 (189)
T ss_dssp THHHHH----TTCCSEEEE
T ss_pred HHHHHe----ecCCcEEEE
Confidence 776653 434445544
No 108
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.23 E-value=1.8e-05 Score=86.99 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=51.5
Q ss_pred HHHHHHHHcCC-ccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC
Q 000957 1085 YSYKVLMQTGD-AELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE 1163 (1209)
Q Consensus 1085 ~~~~~~~~~~~-~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~ 1163 (1209)
....++..++. .....+..|||||++ |+++|++++.+|++||||||+.++|+... .+..+ -
T Consensus 157 ~~~~~L~~l~~~~~~~~~~~lS~G~~q------Rv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~-------~ 218 (312)
T 3aez_A 157 ALMRFVTSVKSGSDYACAPVYSHLHYD------IIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDL-------F 218 (312)
T ss_dssp HHHHHHHHHHTTCSCEEEEEEETTTTE------EEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGG-------C
T ss_pred HHHHHHHHhCCCcccCCcccCChhhhh------hhhhHHHhccCCCEEEECCccccCCcchH-----HHHHh-------c
Confidence 34445554442 222445789999999 88899999999999999999999986221 12222 1
Q ss_pred CcEEEEEecCHHHHH
Q 000957 1164 NFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1164 ~~~~i~itH~~~~~~ 1178 (1209)
+ ..|+|+|+.+...
T Consensus 219 D-~~I~V~a~~~~~~ 232 (312)
T 3aez_A 219 D-FSLYVDARIEDIE 232 (312)
T ss_dssp S-EEEEEEECHHHHH
T ss_pred C-cEEEEECCHHHHH
Confidence 2 4578888887653
No 109
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.14 E-value=6e-05 Score=81.00 Aligned_cols=57 Identities=9% Similarity=0.232 Sum_probs=43.4
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.++.|||||+| |+++|++++. +|+|||||.|||+... .+++.+ ... .++|+|.|..+
T Consensus 95 ~~~~LS~G~~q------rv~iaRal~~---lllldep~~gL~~lD~----~~l~~L-----~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 95 LKEEVNIARKK------RIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHL-----SKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHSCTTCCS------SCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHH-----HTT-SEEEEEETTGG
T ss_pred hHHhcCcccch------hhhhheeeee---eEEEecCCCcCCHHHH----HHHHHH-----Hhc-CcEEEEEeccc
Confidence 34689999999 9999998764 9999999999999773 344444 122 67887777654
No 110
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.12 E-value=0.00019 Score=80.31 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=45.0
Q ss_pred ChhhhhhhhHHHHHHHHHHhc-------cCCCeEEEeCCCCCCCHHh------------HHHHHHHHHHHHHhhccCCCc
Q 000957 1105 SAGQKVLASLIIRLALAETFC-------LNCGILALDEPTTNLDGPN------------AESLAAALHRIMEDRKGQENF 1165 (1209)
Q Consensus 1105 SgG~k~l~sl~ir~~la~~~~-------~~~~~l~lDEp~~~LD~~~------------~~~~~~~l~~~~~~~~~~~~~ 1165 (1209)
|+|+.+ ++.+++.++ .+|+++|+||||++||+.. ...+...|..+. ...|.
T Consensus 208 ~~~~~~------~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la----~~~~~ 277 (349)
T 1pzn_A 208 SNHQML------LVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA----NLYDI 277 (349)
T ss_dssp HHHHHH------HHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHH----HHTTC
T ss_pred hHHHHH------HHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHH----HHcCc
Confidence 677888 556666666 5899999999999999863 345555555553 23588
Q ss_pred EEEEEecCHHHHH
Q 000957 1166 QLIVITHDERFAQ 1178 (1209)
Q Consensus 1166 ~~i~itH~~~~~~ 1178 (1209)
+||+|+|....+.
T Consensus 278 tvii~~h~~~~~~ 290 (349)
T 1pzn_A 278 AVFVTNQVQARPD 290 (349)
T ss_dssp EEEEEEECC----
T ss_pred EEEEEcccccccc
Confidence 9999999876554
No 111
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.05 E-value=0.018 Score=60.86 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=7.5
Q ss_pred hccCCCeEEEeCCC
Q 000957 1124 FCLNCGILALDEPT 1137 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~ 1137 (1209)
+|-+||=|+..+|.
T Consensus 224 ~Cp~CgRIL~~~~~ 237 (256)
T 3na7_A 224 TCPYCGRILYAEGA 237 (256)
T ss_dssp ECTTTCCEEECSCC
T ss_pred ECCCCCeeEEeCcc
Confidence 55666555554443
No 112
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.04 E-value=0.00033 Score=80.68 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=57.2
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhcc-----------CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEE
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCL-----------NCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLI 1168 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~-----------~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i 1168 (1209)
+.+.+||||+|.+-++|-.++|.++.. ...+++|||. +-+|..++....++++.+ |+|+|
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--------glQli 446 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--------DMQLL 446 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--------TCEEE
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--------CCEEE
Confidence 457899999999999999999988642 3578999999 999999999999988875 89999
Q ss_pred EEecC
Q 000957 1169 VITHD 1173 (1209)
Q Consensus 1169 ~itH~ 1173 (1209)
|+|-+
T Consensus 447 iatP~ 451 (483)
T 3euj_A 447 IAAPE 451 (483)
T ss_dssp EEESS
T ss_pred EECcc
Confidence 99988
No 113
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.93 E-value=0.0036 Score=70.52 Aligned_cols=62 Identities=21% Similarity=0.433 Sum_probs=57.1
Q ss_pred CccccccccccchhhhhhhhhcCCHHhhhhheeeccCCCCCCCC-CchhhHHhhHHhhhhhhh
Q 000957 18 GEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQ-DPSTLKKKFDDIFSATRY 79 (1209)
Q Consensus 18 g~~~~~s~k~~~~d~~~~~~lgvs~ail~~VifchQees~wpl~-ep~~Lkk~fDdIf~a~ky 79 (1209)
|.+..+++++.+++..|..++|++...+.+|+|+||+++.|+|. .|+.+++.|+.||++..+
T Consensus 107 ~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~~l~~~~~~r~~~l~~lf~~~~~ 169 (365)
T 3qf7_A 107 GKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQSKET 169 (365)
T ss_dssp SCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTTTTTSCHHHHHHHHHHHTSCHHH
T ss_pred CceeecccChHHHHHHHHHHHCCCHHHhceEEEEcccchHHHHhcChhhHHHHHHHHHhhHHH
Confidence 66777888999999999999999999999999999999999996 799999999999998643
No 114
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.87 E-value=0.00027 Score=74.46 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=38.4
Q ss_pred ccCCCeEEEeCCCCCCCHHh------------HHHHHHHHHHHHHhhccCCCcEEEEEec----CHHHHHHhhhHhhhhc
Q 000957 1125 CLNCGILALDEPTTNLDGPN------------AESLAAALHRIMEDRKGQENFQLIVITH----DERFAQLIGQRQHAEK 1188 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~------------~~~~~~~l~~~~~~~~~~~~~~~i~itH----~~~~~~~~~~~~~~~~ 1188 (1209)
..+|++++|||||++||+.. ...+...|..+. ...|.+||+||| +...+..+||.++...
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~----~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~ 198 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA----NLYDIAVFVTNQVQANGGHILAHSATLRVYLR 198 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHH----HHHTCEEEEEEECC---------CCSEEEEEE
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHH----HHCCCeEEEEeecccCcchhhHhhceEEEEEE
Confidence 45899999999999999842 235666666553 234889999999 5555887776655443
No 115
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.83 E-value=1.2e-05 Score=87.21 Aligned_cols=66 Identities=12% Similarity=-0.003 Sum_probs=51.6
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
...||||||| | ||+|+.+|++|| |++||+.+...+. .+||++..+ .+
T Consensus 198 g~~LSgGqkQ------R---ARAll~~p~iLl----Ts~LD~~~~~~i~-------------------~ltH~~~~~-~~ 244 (305)
T 2v9p_A 198 GYPVSIDRKH------K---AAVQIKAPPLLV----TSNIDVQAEDRYL-------------------YLHSRVQTF-RF 244 (305)
T ss_dssp TCCEECCCSS------C---CCCEECCCCEEE----EESSCSTTCGGGG-------------------GGTTTEEEE-EC
T ss_pred ccCcCHHHHH------H---HHHHhCCCCEEE----ECCCCHHHHHHHH-------------------HHhCCHHHH-Hh
Confidence 5689999999 8 999999999999 9999998776543 138888775 47
Q ss_pred hhHhhhhcCcEEeecCCccc
Q 000957 1181 GQRQHAEKYYRVAKDDHQHS 1200 (1209)
Q Consensus 1181 ~~~~~~~~~~~v~~~~~~~s 1200 (1209)
||++ ++..|+|+..|+...
T Consensus 245 aD~i-vl~~G~iv~~g~~~e 263 (305)
T 2v9p_A 245 EQPC-TDESGEQPFNITDAD 263 (305)
T ss_dssp CCCC-CCC---CCCCCCHHH
T ss_pred CCEE-EEeCCEEEEeCCHHH
Confidence 8999 888999988876544
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.76 E-value=0.0015 Score=72.73 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=45.8
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhh
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAE 1187 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~ 1187 (1209)
.-+|+++|.++|++|+||||| |+.....+.. . ...|.++|++||+.+.+ .+|++++.+
T Consensus 186 ~~~La~aL~~~PdvillDEp~---d~e~~~~~~~----~-----~~~G~~vl~t~H~~~~~-~~~dRli~l 243 (356)
T 3jvv_A 186 SEALRSALREDPDIILVGEMR---DLETIRLALT----A-----AETGHLVFGTLHTTSAA-KTIDRVVDV 243 (356)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHH----H-----HHTTCEEEEEESCSSHH-HHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEecCCCC---CHHHHHHHHH----H-----HhcCCEEEEEEccChHH-HHHHHHhhh
Confidence 558999999999999999999 7665443333 3 23588999999999988 678887766
No 117
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.53 E-value=0.001 Score=79.30 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=49.4
Q ss_pred cCCCeEEEeCCCCC-----CCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH---------HHHhhhHhhhhcC
Q 000957 1126 LNCGILALDEPTTN-----LDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF---------AQLIGQRQHAEKY 1189 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~-----LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~---------~~~~~~~~~~~~~ 1189 (1209)
..|.+++|||||+. ||+..+..|..++..+. ..|.++|+|||++.. +..+||++++++.
T Consensus 137 g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~-----~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLK-----QIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHH-----HHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHH-----HCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 56889999999984 68999999999998872 358899999999988 4667888887766
No 118
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.32 E-value=0.00047 Score=75.48 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=44.1
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCC-CCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTN-LDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~-LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
+...+|||+++ |+++|++++ ++++||||++ ||+... ..++.+ ....+..+|+++||+.
T Consensus 110 ~~~~~sgg~rq------rv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l----~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 110 YLHDESGLNRR------HIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAI----HNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHTSSCCT------TCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHH----TTTSCEEEEECCGGGS
T ss_pred HHHHhCHHhhh------hhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHH----HhcCCEEEEEEeCCCC
Confidence 44679999999 888887765 9999999985 999763 444444 2234778899999974
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.24 E-value=0.0036 Score=62.76 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=37.2
Q ss_pred ccCCCeEEEeCCCC-CCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1125 CLNCGILALDEPTT-NLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~-~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
+.+|++||||||++ ++|+.....|..+|... ...|.++|++||..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~-----~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYR-----YNNLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHH-----HHTTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH-----HHcCCCEEEEcCCC
Confidence 35899999999996 99999988888877765 23578999999965
No 120
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=96.20 E-value=0.53 Score=41.03 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 701 ADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREE 780 (1209)
Q Consensus 701 i~~l~~ei~~l~~ei~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~ 780 (1209)
+..+..++.++.++++....++...+ .-+.+-+-.++.+++.-..-+.++..++.+...++..+......+..-..+
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVg---kML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q 89 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVG---NMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ 89 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH
Confidence 34455555555555555555543321 112222333333333333333344444444444443333333333333333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000957 781 KVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAE 817 (1209)
Q Consensus 781 ~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~ 817 (1209)
..+..-.+..+..+...+.+-..-++.+...|.-++.
T Consensus 90 QnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrK 126 (167)
T 4gkw_A 90 QNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRK 126 (167)
T ss_dssp HHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444443333
No 121
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=96.15 E-value=0.035 Score=50.17 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=23.5
Q ss_pred HhHHHhhHHHHHHHhh-CCCCccccCCCCchHHHHHHHHHHHHH
Q 000957 569 DGMRQMFDPFERVARA-HHVCPCCERPFSAEEEDEFVKKQRVKA 611 (1209)
Q Consensus 569 ~~~~~~~~~~~~~~~~-~~~c~~C~r~~~~~e~~~~~~~l~~~~ 611 (1209)
......+...+..+.. .+.||+|+..+++......+......+
T Consensus 30 ~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l 73 (112)
T 1l8d_A 30 KNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDL 73 (112)
T ss_dssp HHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 3333333334444444 668999999998654333444444444
No 122
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.13 E-value=0.91 Score=63.85 Aligned_cols=185 Identities=7% Similarity=0.044 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000957 82 ALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTELTLKDLRK 161 (1209)
Q Consensus 82 ale~lk~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~~~~~~~~ 161 (1209)
-|+-|+.-++-....-+.+.....++..-.++.......++.++.++...+.++.+...+.+.+-.++. ....+..+
T Consensus 1897 yLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~---~~~~~ae~ 1973 (3245)
T 3vkg_A 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV---QDQQAAEI 1973 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344444444444444445555555555555555555555555555555555444444443333322222 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 162 MQDQISTMTARRSTLFEQQQKQYAALAEEIEDT--DEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDA 239 (1209)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~--~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1209)
........+.........+...+...+.+|..- ..-+++.+...+..+...+.++...+.++.+++.++..++.++..
T Consensus 1974 ~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 1974 KQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333333333333333333332223221 134555555566666666666666666666666666666666666
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Q 000957 240 YTAEITNLLSEAGAHMSRMNERDSTIQKLF 269 (1209)
Q Consensus 240 l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (1209)
...+...++.+.+..+..+.....++..++
T Consensus 2054 ~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A 2054 LIRETEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666666666666666666665555555443
No 123
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.93 E-value=0.0016 Score=69.02 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=45.1
Q ss_pred cccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecC-HHHH
Q 000957 1099 EMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHD-ERFA 1177 (1209)
Q Consensus 1099 ~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~-~~~~ 1177 (1209)
..+..+|||+++ |+++ ++++.+|+++|||+|+..+++. +.++ .+.+|+|+||+ ..+.
T Consensus 112 ~~~~~ls~g~~~------r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~-------~~~~i~v~th~~~~~~ 169 (245)
T 2jeo_A 112 VEVPTYDFVTHS------RLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM-------FHLRLFVDTDSDVRLS 169 (245)
T ss_dssp EEECCEETTTTE------ECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT-------CSEEEEEECCHHHHHH
T ss_pred eecccccccccC------ccCc-eEEecCCCEEEEeCccccccHH--------HHHh-------cCeEEEEECCHHHHHH
Confidence 345789999999 5555 4677899999999999988863 2222 36799999997 4444
Q ss_pred HHhhh
Q 000957 1178 QLIGQ 1182 (1209)
Q Consensus 1178 ~~~~~ 1182 (1209)
..+++
T Consensus 170 r~~~r 174 (245)
T 2jeo_A 170 RRVLR 174 (245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 124
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.75 E-value=0.0045 Score=63.83 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=45.0
Q ss_pred ccCCCChhhhhhhhHHHH-HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIR-LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIM 1156 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir-~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~ 1156 (1209)
....+|||+++ + +..+++++.+|+++++||||+++|+.++..+...|.+++
T Consensus 146 K~D~~s~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARK------AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHH------HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHH------HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 34579999999 7 778888888899899999999999999999999998874
No 125
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.60 E-value=1.3 Score=41.86 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=33.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 000957 652 TIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIKADKESVEVLVQPVET-ADRLFQEIQLWQKQVDDLEYML 722 (1209)
Q Consensus 652 ~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~-i~~l~~ei~~l~~ei~~l~~~l 722 (1209)
.+..|+.++..+...+..-......+.....++......++....++.. +..+...-..|+.++..+.+.+
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444444444444444444444444333333 4445555555555555555554
No 126
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.45 E-value=2 Score=60.62 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=68.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Q 000957 820 GPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKI 899 (1209)
Q Consensus 820 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~ 899 (1209)
+|++.++..++.++..+.+++......+.+...++.....++.....+...... ..+.++.++...+.-+..+..
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~-----e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT-----ESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhh
Confidence 677778888888888888888887777777777777777777777766666655 677788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000957 900 RTDEILVELDRFKDIVR 916 (1209)
Q Consensus 900 ~i~~l~~~i~~l~~~~~ 916 (1209)
+..++...+..+...+.
T Consensus 2085 Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A 2085 ERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 88877777777765533
No 127
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.32 E-value=0.00019 Score=74.55 Aligned_cols=69 Identities=12% Similarity=-0.008 Sum_probs=53.2
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCC-------CCHHhHHHHHHHHHHHHHhhccCCCcEEEEEec
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTN-------LDGPNAESLAAALHRIMEDRKGQENFQLIVITH 1172 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~-------LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH 1172 (1209)
++..+|+|++..-. .|++++++++.+|+++++||||++ ||+.....+.+.+.... ...|.++++|+|
T Consensus 86 ~~~~~s~g~~~~~~--~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~----~~~g~t~~~~~~ 159 (211)
T 3asz_A 86 PVYDFRAYTRSPRR--TPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDV----LERGRSLEGVVA 159 (211)
T ss_dssp CCEETTTTEECSSC--EEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHH----HHSCCCHHHHHH
T ss_pred CcccCcccCCCCCe--EEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHH----HHhCCCHHHHHH
Confidence 34679999752110 066778899999999999999999 99999988888887653 234778999999
Q ss_pred CH
Q 000957 1173 DE 1174 (1209)
Q Consensus 1173 ~~ 1174 (1209)
+.
T Consensus 160 ~~ 161 (211)
T 3asz_A 160 QY 161 (211)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 128
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.31 E-value=0.029 Score=63.41 Aligned_cols=79 Identities=15% Similarity=0.359 Sum_probs=66.1
Q ss_pred cchhhhhhhhhcCCHHhhhhheeeccCCC-CCCCCCchhhHHhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 28 ADMDREVPALMGVSKAILENVIFVHQDEA-NWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLEN 106 (1209)
Q Consensus 28 ~~~d~~~~~~lgvs~ail~~VifchQees-~wpl~ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~~~~lK~~~~~l~~ 106 (1209)
.++...+..++|+++..+.+|||.+|++. .--+..|+..++.||.+|+...|..+...+....++....++.....++.
T Consensus 109 ~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~~~~~Rr~~ld~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 188 (371)
T 3auy_A 109 SAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNY 188 (371)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCcCHHHhCceeeecCccHHHHHhcCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888889999999999999999999986 44446899999999999999999999888888877777777766555443
No 129
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.25 E-value=2.4 Score=41.15 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=19.7
Q ss_pred HHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 803 EEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQ 850 (1209)
Q Consensus 803 ~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 850 (1209)
.++..+...+..+...+..+..+++.+..++.....+.......++..
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~e 96 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDD 96 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433333333333
No 130
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.65 E-value=0.023 Score=54.60 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=32.5
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcE-EEEEecC
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQ-LIVITHD 1173 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~-~i~itH~ 1173 (1209)
+..+|++|+||||++ +++.....|..+|..+. ..|.+ +||+||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~-----~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFR-----NSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHH-----HHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHH-----HcCCcEEEEECCC
Confidence 457899999999998 66655777777777652 34566 7778884
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.63 E-value=0.023 Score=64.04 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=36.8
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
+.+|+++|||||++ ||+.....|...|.+. ..+.+||++||+...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~------~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY------SKNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS------TTTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh------cCCCEEEEEeCCHHH
Confidence 56889999999999 9999998888877764 357899999998753
No 132
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.60 E-value=3.6 Score=39.93 Aligned_cols=63 Identities=22% Similarity=0.198 Sum_probs=31.5
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000957 190 EIEDTDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAG 252 (1209)
Q Consensus 190 ~l~~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~ 252 (1209)
.|+..+..|......+...+..++..-+.+++........+..+...++.......=|+.++.
T Consensus 92 ~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555555555555544444444444
No 133
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.48 E-value=0.0082 Score=62.01 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=62.6
Q ss_pred cccccchhhhhhhhhcCCHHhhhhh-----eeeccCCCCCCCCCchhhHHhhHHhhhhhhhHHHHHHHHHHHHHH
Q 000957 24 SYRCADMDREVPALMGVSKAILENV-----IFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQ 93 (1209)
Q Consensus 24 s~k~~~~d~~~~~~lgvs~ail~~V-----ifchQees~wpl~ep~~Lkk~fDdIf~a~ky~kale~lk~~rke~ 93 (1209)
..+..|++..|..++|++..-+.++ ++.+|+++.=+|.-|++.++ |++||++..|.+.-+.++...++.
T Consensus 147 ~~~~~dv~~~i~~~lGl~~~~F~~~~~y~~v~l~QG~f~~fL~a~~eR~~-l~~l~~~~~y~~~~~~l~~~~k~~ 220 (227)
T 1qhl_A 147 VLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSK-FYRLIEASLYGGISSAITRSLRDY 220 (227)
T ss_dssp ECCHHHHHHHHHTSTTCEEEECSCHHHHHHHHHHTTSBSSCCCSHHHHHH-HHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHCCCHHHhcCccccceEEeccchHHHhhcCHHHHHH-HHHHHCcHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999 99999999999999999999 999999999999888888766653
No 134
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.41 E-value=0.042 Score=61.76 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=43.9
Q ss_pred HHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhh
Q 000957 1115 IIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHA 1186 (1209)
Q Consensus 1115 ~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~ 1186 (1209)
.++.+|+.+|..+|+++++|||+ |+..... ++... ..|..+|+++|+.+ +..+|+++..
T Consensus 197 ~~~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~~------~~g~~vi~t~H~~~-~~~~~~rl~~ 255 (372)
T 2ewv_A 197 SFADALRAALREDPDVIFVGEMR---DLETVET---ALRAA------ETGHLVFGTLHTNT-AIDTIHRIVD 255 (372)
T ss_dssp CSHHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHHH------TTTCEEEECCCCCS-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHHH------hcCCEEEEEECcch-HHHHHHHHHH
Confidence 34789999999999999999999 7765433 33322 35788999999977 6667777643
No 135
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.36 E-value=0.02 Score=69.09 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=40.3
Q ss_pred cCCCeEEEeCC------CCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1126 LNCGILALDEP------TTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1126 ~~~~~l~lDEp------~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
..|+++++||| |+|||+.....+..++..++. ...+..++++|||.+++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~---~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ---RQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT---SSSCCEEEEEESSSCTT
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh---cCCCCceEEEeccchhc
Confidence 46999999999 999999999999999988642 23477899999998755
No 136
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.03 E-value=0.02 Score=60.37 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=29.6
Q ss_pred cCCCeEEEeCCCCCCCHH-------h-----HHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1126 LNCGILALDEPTTNLDGP-------N-----AESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~-------~-----~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
.+|+++|+|||++.+|+. . ...+...|..+. ...|.+||+|+|......
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~----~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLA----DEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHH----HHHCCEEEEEC-------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH----HHcCCEEEEEeeeeecCC
Confidence 589999999999999985 2 334444455543 234889999999776554
No 137
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.97 E-value=4.2 Score=38.34 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Q 000957 794 AEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREY 844 (1209)
Q Consensus 794 l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~ 844 (1209)
+.+...++...+..+...+.++...+..+......+..++..+...+....
T Consensus 32 lkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 32 LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444445555555444444444
No 138
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.79 E-value=0.026 Score=63.74 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=50.4
Q ss_pred CCChhhhhhhhHHHHHHHHHHh-ccCCCeEEEeC---CC------CCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEec
Q 000957 1103 RCSAGQKVLASLIIRLALAETF-CLNCGILALDE---PT------TNLDGPNAESLAAALHRIMEDRKGQENFQLIVITH 1172 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~-~~~~~~l~lDE---p~------~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH 1172 (1209)
.+|+|+++ +..++.+. ..+|++++||| |+ .++|+..+..|+++|.++.. ..|.+||+++|
T Consensus 258 ~~~~~~~~------~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~----~~~~~ililde 327 (365)
T 1lw7_A 258 CIQYEGKA------HPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLD----KYKVPYIEIES 327 (365)
T ss_dssp HHHHHSCC------CHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHH----GGGCCCEEEEC
T ss_pred HHHHcCCC------CHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHH----HcCCCEEEeCC
Confidence 34556566 55555554 35899999999 65 58999999999999988743 23679999998
Q ss_pred CHHHHHHhhhHhhhhc
Q 000957 1173 DERFAQLIGQRQHAEK 1188 (1209)
Q Consensus 1173 ~~~~~~~~~~~~~~~~ 1188 (1209)
. ..++.+++.+....
T Consensus 328 ~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 328 P-SYLDRYNQVKAVIE 342 (365)
T ss_dssp S-SHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHH
Confidence 5 46667777655443
No 139
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.69 E-value=0.78 Score=58.60 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=23.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 000957 781 KVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLK 837 (1209)
Q Consensus 781 ~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~ 837 (1209)
+..++..+..++....+...++..+..+..++..++.++..+..+.+.++.....+.
T Consensus 962 ~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 962 TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444444433333333
No 140
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.48 E-value=0.0032 Score=63.73 Aligned_cols=83 Identities=12% Similarity=-0.029 Sum_probs=52.8
Q ss_pred ChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecC-HHHHHHhhhH
Q 000957 1105 SAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHD-ERFAQLIGQR 1183 (1209)
Q Consensus 1105 SgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~-~~~~~~~~~~ 1183 (1209)
|+|+++.+.++...+=..++...|....+| .+||+..+.. .+.+..+ ...+.++|.+||. ++.++.+|++
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d---~~ld~~~~~~-~~~~~~~-----~~~~~~ii~tsh~~~~~~e~~~~~ 166 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKD---EQMGERCLEL-VEEFESK-----GIDERYFYNTSHLQPTNLNDIVKN 166 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT-----TCCTTSEEECSSSCGGGHHHHHHH
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhcccc---ccCCHHHHHH-HHHHhhc-----CCCccEEEeCCCCChhhHHHHHHH
Confidence 888876333221101111455666666777 3899988877 7766655 3346788999998 9999999999
Q ss_pred hhhhcCcEEeecCCc
Q 000957 1184 QHAEKYYRVAKDDHQ 1198 (1209)
Q Consensus 1184 ~~~~~~~~v~~~~~~ 1198 (1209)
+. ..|++..+|++
T Consensus 167 i~--~~g~~~~~~~~ 179 (189)
T 2bdt_A 167 LK--TNPRFIFCMAG 179 (189)
T ss_dssp HH--HCGGGSCC---
T ss_pred Hh--hCCcEEEeecC
Confidence 88 88898888754
No 141
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.38 E-value=0.032 Score=60.68 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=37.6
Q ss_pred ChhhhhhhhHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1105 SAGQKVLASLIIRLALAETFCLNCG--ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1105 SgG~k~l~sl~ir~~la~~~~~~~~--~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
+.+.++ |.+||++++.+|. +++|| |+++.+ +...+..+. ...|.++|||||+...
T Consensus 204 ~eLs~~------r~~iaRal~~~P~~~lLvLD-a~t~~~------~~~~~~~~~----~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 204 EELKKV------KRAIAKADPEEPKEVWLVLD-AVTGQN------GLEQAKKFH----EAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHH------HHHHHHHCTTCCSEEEEEEE-TTBCTH------HHHHHHHHH----HHHCCSEEEEECTTSS
T ss_pred HHHHHH------HHHHHHhhcCCCCeEEEEEc-HHHHHH------HHHHHHHHH----HHcCCcEEEEECCccc
Confidence 444467 9999999999998 66666 555543 444444442 1236899999998653
No 142
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.34 E-value=0.029 Score=63.81 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=39.3
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCC---eEEEeCCC-CCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCG---ILALDEPT-TNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~---~l~lDEp~-~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.+++|+++ |++|+++++.+|. +|++|||| .+||+... ..+..+ . .+..+|+|.|..+
T Consensus 118 ~~~~~l~q------r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L-----~-~~v~iIlVinK~D 178 (418)
T 2qag_C 118 KFEDYLNA------ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRL-----H-EKVNIIPLIAKAD 178 (418)
T ss_dssp HHHHHTTT------SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHH-----T-TTSEEEEEEESTT
T ss_pred HHHHHHHH------HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHH-----h-ccCcEEEEEEccc
Confidence 45677777 7889999999999 99999999 69998764 334444 2 3567777766544
No 143
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.80 E-value=8.5 Score=36.08 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000957 117 LRESISQDQEKTEALKNQMQELEKSIQDIDDKIHHTEL 154 (1209)
Q Consensus 117 ~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~l~~ 154 (1209)
....++..+.+.+.....+..+..++..+...+..+..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~ 63 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEA 63 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 55555556666666666666666655555544444433
No 144
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.06 E-value=10 Score=35.57 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000957 879 RFKELQEKKSQSESEVKSCKIRTDEILVELDRFKDIVRN 917 (1209)
Q Consensus 879 ~l~~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~ 917 (1209)
++..+...+.+.+......+..+..++..|..+...+..
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555566666666666555543
No 145
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.80 E-value=0.014 Score=62.96 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=29.9
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHH
Q 000957 1101 RGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGP 1143 (1209)
Q Consensus 1101 ~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~ 1143 (1209)
...+||||++ |+++|++...+|+++|+||||++||+.
T Consensus 132 ~~~~sgGq~~------R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 132 DKSQFKGEGD------RCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp ETTHHHHTCE------ECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred ccccCCcccc------ccccccceEcCCCEEEEeCccccCCcc
Confidence 3579999999 877763222289999999999999985
No 146
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.57 E-value=0.041 Score=58.10 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=29.1
Q ss_pred ccCCCeEEEe----CCCCCCCHHhHHHHHHHHHHHH
Q 000957 1125 CLNCGILALD----EPTTNLDGPNAESLAAALHRIM 1156 (1209)
Q Consensus 1125 ~~~~~~l~lD----Ep~~~LD~~~~~~~~~~l~~~~ 1156 (1209)
+.+|++++|| |||++||+.+...+...|..+.
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 7899999999 9999999999999988888763
No 147
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.50 E-value=0.88 Score=50.50 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 000957 936 AKVDKFASEIESLEER 951 (1209)
Q Consensus 936 ~~l~~l~~ei~~l~~~ 951 (1209)
..++.++++++++...
T Consensus 176 ~sY~~~QKQLeQv~a~ 191 (562)
T 3ghg_A 176 KDYEDQQKQLEQVIAK 191 (562)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3556666666666543
No 148
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.45 E-value=0.19 Score=56.66 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=32.0
Q ss_pred cCCCeEEEeCCCCCCCHHhH------------HHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1126 LNCGILALDEPTTNLDGPNA------------ESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~------------~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
.+|+++++|+|++.+|+... ..+...|..+. ...|.+||+|+|..
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~la----ke~gitVIlv~Hv~ 328 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLA----DQFGVAVVVTNQVV 328 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHH----HHHCCEEEEEEEC-
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHH----HHcCCEEEEEEeec
Confidence 57999999999999997533 45566666663 33589999999983
No 149
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.76 E-value=11 Score=32.69 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 000957 860 MLLKIASKIK 869 (1209)
Q Consensus 860 ~l~~~~~~i~ 869 (1209)
.+..+++.|+
T Consensus 87 ev~~L~Rriq 96 (101)
T 3u1c_A 87 EVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 150
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.53 E-value=0.22 Score=61.72 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=48.7
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCC-CCCHHhHHHHHHHHHHHHHhhccCCCcEEEEE--ecCHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTT-NLDGPNAESLAAALHRIMEDRKGQENFQLIVI--THDERFAQ 1178 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~-~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~i--tH~~~~~~ 1178 (1209)
..+|+|+.+ |+.++..++.+++++|+|||+. +||......+...|... . .+.++|+. ||+...+.
T Consensus 189 ~v~T~G~l~------r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-----~-~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLL------REAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-----R-PDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHH------HHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-----C-TTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHH------HHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-----C-CCceEEEEeccccHHHHH
Confidence 458899988 8888888899999999999996 89976655554444332 1 24444443 89887766
Q ss_pred Hhh
Q 000957 1179 LIG 1181 (1209)
Q Consensus 1179 ~~~ 1181 (1209)
.++
T Consensus 257 ~~~ 259 (773)
T 2xau_A 257 RYF 259 (773)
T ss_dssp HHT
T ss_pred HHh
Confidence 543
No 151
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.37 E-value=0.4 Score=53.16 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=33.9
Q ss_pred HHHHHhc--cCCCeEEEeCCCCCC----------CH---HhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1119 ALAETFC--LNCGILALDEPTTNL----------DG---PNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1119 ~la~~~~--~~~~~l~lDEp~~~L----------D~---~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.++++++ .+|+++|+|+|++.+ |+ .....+...|..+.... ...|++||+|+|...
T Consensus 129 ~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a-~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 129 EIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL-NNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHH-HHHTCEEEEEEECC-
T ss_pred HHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHH-HHhCCEEEEEecccc
Confidence 3444444 459999999999998 32 12223445555543221 235789999999653
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.88 E-value=0.55 Score=50.68 Aligned_cols=72 Identities=10% Similarity=-0.037 Sum_probs=47.4
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEE--ecCHHHHHHhhhHhhhhcCcEEee
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVI--THDERFAQLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~i--tH~~~~~~~~~~~~~~~~~~~v~~ 1194 (1209)
+.++++ +.+|+++|+| |+|+|+.....+..+.. ++.. ......++|+ ||....+..+++.......++|+.
T Consensus 174 ~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~--~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 174 QQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPF--ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCC--CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhh--cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 566664 3899999999 99999877765554333 3210 1122234555 999998988888766656666654
Q ss_pred c
Q 000957 1195 D 1195 (1209)
Q Consensus 1195 ~ 1195 (1209)
.
T Consensus 247 t 247 (296)
T 2px0_A 247 T 247 (296)
T ss_dssp E
T ss_pred e
Confidence 3
No 153
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.63 E-value=0.1 Score=57.40 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHh
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLI 1180 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~ 1180 (1209)
.+||||+| |...+++++..|+++ ||| ..+...|+.+ ..+.+||++||+.--+..+
T Consensus 141 ~ls~g~~Q------~~~ad~ill~k~dl~--de~---------~~l~~~l~~l------~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQ------VGYADRILLTKTDVA--GEA---------EKLHERLARI------NARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHH------HHTCSEEEEECTTTC--SCT---------HHHHHHHHHH------CSSSCEEECCSSCCCGGGG
T ss_pred hchHHHHH------HHhCCEEEEECcccC--CHH---------HHHHHHHHHh------CCCCeEEEecccCCCHHHH
Confidence 68999999 765555555666655 666 5666777665 2578999999965444433
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.34 E-value=0.47 Score=49.75 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=34.6
Q ss_pred cCCCeEEEeCCCCCC--CHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1126 LNCGILALDEPTTNL--DGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~L--D~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
.+|+++++|+|++.+ |+.....+...|..++ ...|.++|+++|....
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~----~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVL----AGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH----HHTTCEEEEEEECC--
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH----HHCCCeEEEEecCCCC
Confidence 579999999999988 6655666666666554 2357899999997765
No 155
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.62 E-value=15 Score=39.21 Aligned_cols=6 Identities=33% Similarity=1.243 Sum_probs=3.5
Q ss_pred CCCCCC
Q 000957 56 ANWPLQ 61 (1209)
Q Consensus 56 s~wpl~ 61 (1209)
.+||+-
T Consensus 34 ~d~~~C 39 (390)
T 1deq_A 34 TGWPFC 39 (390)
T ss_pred CCCCCC
Confidence 566654
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=86.23 E-value=0.3 Score=56.68 Aligned_cols=78 Identities=8% Similarity=0.012 Sum_probs=50.9
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhc--cCCCeEEEeCCCCCCCH--------HhHHHHHHHHHHHHHhhccCCCcEEEEEe
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFC--LNCGILALDEPTTNLDG--------PNAESLAAALHRIMEDRKGQENFQLIVIT 1171 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~--~~~~~l~lDEp~~~LD~--------~~~~~~~~~l~~~~~~~~~~~~~~~i~it 1171 (1209)
+.+|+|+.. +.++.+. .+|+++|+|+|+...++ ..+..+...|+.+. ...|++||+++
T Consensus 294 ~~~s~~~i~--------~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA----ke~~i~vi~~s 361 (454)
T 2r6a_A 294 PSIRVSDIR--------AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA----RELEVPVIALS 361 (454)
T ss_dssp TTCCHHHHH--------HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH----HHHTCCEEEEE
T ss_pred CCCCHHHHH--------HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH----HHhCCeEEEEe
Confidence 468888865 3333333 67999999999998753 23355666666663 23578999999
Q ss_pred c---------C--HH--------HHHHhhhHhhhhcCcE
Q 000957 1172 H---------D--ER--------FAQLIGQRQHAEKYYR 1191 (1209)
Q Consensus 1172 H---------~--~~--------~~~~~~~~~~~~~~~~ 1191 (1209)
| + +. .+.+.||.+++.+...
T Consensus 362 ql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 362 QLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 9 3 22 4666677766655433
No 157
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.21 E-value=5.1 Score=48.22 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000957 884 QEKKSQSESEVKSCKIRTDEILV 906 (1209)
Q Consensus 884 ~~~l~~~~~~i~~~~~~i~~l~~ 906 (1209)
...+.++.+++..+..+++.+..
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444333
No 158
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.05 E-value=19 Score=38.51 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000957 893 EVKSCKIRTDEILVELDRFKDIV 915 (1209)
Q Consensus 893 ~i~~~~~~i~~l~~~i~~l~~~~ 915 (1209)
.|..|+..|..+..+|..|+..|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 159
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.84 E-value=16 Score=31.75 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 000957 859 EMLLKIASKIK 869 (1209)
Q Consensus 859 ~~l~~~~~~i~ 869 (1209)
..+..+++.|+
T Consensus 86 ~evasLnRriq 96 (101)
T 3u59_A 86 AEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 160
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=85.80 E-value=18 Score=31.76 Aligned_cols=14 Identities=36% Similarity=0.304 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHhH
Q 000957 775 HTLREEKVKAANTL 788 (1209)
Q Consensus 775 ~~l~~~~~~~~~~~ 788 (1209)
..++.+...++..+
T Consensus 63 ~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 63 GKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH
Confidence 33333333333333
No 161
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.65 E-value=19 Score=32.29 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=12.1
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 000957 738 ELSGSLSTKDNLQNELEKLRDEQRYMEN 765 (1209)
Q Consensus 738 ~~~~l~~~~~~l~~e~~~l~~~~~~~~~ 765 (1209)
.+..++.++..+..+...+..++..++.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 162
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=84.75 E-value=0.32 Score=55.16 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=46.8
Q ss_pred ccCCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEe-cCHHHHH
Q 000957 1100 MRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVIT-HDERFAQ 1178 (1209)
Q Consensus 1100 ~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~it-H~~~~~~ 1178 (1209)
....||+|+++ +++++++|+..|.+++| +.+|+... .....+...+ ...|.++|+|| |...-+.
T Consensus 249 ~~~~ls~g~~e------l~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l----~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 249 PLKTLETLRKE------VGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADAL----AREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp HHHHHHHHHHH------HHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHH----HTTTSCEEECCTTTCTTHH
T ss_pred CHHHHHHHHHH------HHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHH----HhcCCeEEEEECCCccCHH
Confidence 34679999999 88889999999999999 99999877 4444444443 23466666655 5444344
Q ss_pred Hhh
Q 000957 1179 LIG 1181 (1209)
Q Consensus 1179 ~~~ 1181 (1209)
.++
T Consensus 314 eL~ 316 (416)
T 1udx_A 314 ALK 316 (416)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 163
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.64 E-value=14 Score=44.23 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 884 QEKKSQSESEVKSCKIRTDEILVELDRFKDIVR 916 (1209)
Q Consensus 884 ~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~ 916 (1209)
+.++.+++..++.....+..+.+++..+..++.
T Consensus 543 ~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 164
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=84.09 E-value=0.91 Score=52.36 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=41.5
Q ss_pred HHHHHHHhccCCCeEEEeCCCC----------CCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1117 RLALAETFCLNCGILALDEPTT----------NLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~----------~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
|-.|+.+....|.+||+|||++ +.|+.....+..+|..+ .......+..||.+||.++.+.
T Consensus 98 r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~l-d~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 98 RDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM-DGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHH-HHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHH-hccCCCCCEEEEEecCChhhhc
Confidence 7788888888899999999954 56666666666666654 2211234678888999987553
No 165
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.60 E-value=17 Score=33.33 Aligned_cols=28 Identities=7% Similarity=-0.079 Sum_probs=7.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 000957 811 DEKLLAEASGPLSKEKEKLLSDYNDLKV 838 (1209)
Q Consensus 811 ~i~~~~~~l~~l~~~l~~l~~~~~~~~~ 838 (1209)
.+...+.++.++...+..+..+++.++.
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLS 59 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334444444333333
No 166
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.54 E-value=30 Score=38.63 Aligned_cols=14 Identities=0% Similarity=-0.059 Sum_probs=6.1
Q ss_pred HHHHHHhHHHHHHH
Q 000957 251 AGAHMSRMNERDST 264 (1209)
Q Consensus 251 ~~~~~~~~~~~~~~ 264 (1209)
++.|+...+++.+.
T Consensus 175 ~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 175 LKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444433
No 167
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.53 E-value=29 Score=32.37 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 889 QSESEVKSCKIRTDEILVELDRFK 912 (1209)
Q Consensus 889 ~~~~~i~~~~~~i~~l~~~i~~l~ 912 (1209)
.++..+......+..++..+..|.
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 168
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.15 E-value=1.2 Score=45.50 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=33.4
Q ss_pred ccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHH
Q 000957 1125 CLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQL 1179 (1209)
Q Consensus 1125 ~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~ 1179 (1209)
+..++++||| ||+.+...+...+. .+.+|||+||+++.+..
T Consensus 105 l~~G~illLD-----LD~~~~~~i~~~l~---------~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 105 LATGVDVFLD-----IDWQGAQQIRQKMP---------HARSIFILPPSKIELDR 145 (219)
T ss_dssp HTTTCEEEEE-----CCHHHHHHHHHHCT---------TCEEEEEECSSHHHHHH
T ss_pred HhcCCeEEEE-----ECHHHHHHHHHHcc---------CCEEEEEECCCHHHHHH
Confidence 3568999999 99999988777543 46899999999988764
No 169
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=82.78 E-value=0.22 Score=47.60 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=32.2
Q ss_pred ccccccc-cchhhhhhhhhcCCHHhhhhheeeccCCCCCCC
Q 000957 21 VCLSYRC-ADMDREVPALMGVSKAILENVIFVHQDEANWPL 60 (1209)
Q Consensus 21 ~~~s~k~-~~~d~~~~~~lgvs~ail~~VifchQees~wpl 60 (1209)
..+++++ .|++..|+. | +++..+.++|||||++...+|
T Consensus 109 ~~~~~~~~~~v~~~i~~-l-l~~~~f~~~~~i~QG~~~~~l 147 (149)
T 1f2t_A 109 KHVTEPSSKAISAFMEK-L-IPYNIFLNAIYIRQGQIDAIL 147 (149)
T ss_dssp EESSCSSHHHHHHHHHH-H-SCHHHHHHHTEECTTHHHHHT
T ss_pred EEcccCchHHHHHHHHH-H-cCHHHhhheEEEcCcCHHHHh
Confidence 3466778 999999999 8 999999999999999865443
No 170
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.53 E-value=2.3 Score=45.72 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHhccCCCeEEEeCC-CCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEec
Q 000957 1117 RLALAETFCLNCGILALDEP-TTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITH 1172 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp-~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH 1172 (1209)
|.+++.+...+++++|+|+| +.++|......+..++..+ .....++|+..
T Consensus 170 ~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~------~~~~~~lv~~~ 220 (295)
T 1ls1_A 170 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL------GPDEVLLVLDA 220 (295)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH------CCSEEEEEEEG
T ss_pred HHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc------CCCEEEEEEeC
Confidence 77888877789999999999 9999998888888776655 23345555543
No 171
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.48 E-value=19 Score=33.53 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000957 204 NFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHM 255 (1209)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~ 255 (1209)
-....+...+.........+..+...+..+...+..+....++.......|+
T Consensus 84 ~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~ye 135 (147)
T 2b9c_A 84 IIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLE 135 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444444444333
No 172
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.75 E-value=0.11 Score=60.40 Aligned_cols=70 Identities=9% Similarity=0.071 Sum_probs=42.9
Q ss_pred CCChhhhhhhhHHH----HH-HHHHHhccCCC-eEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1103 RCSAGQKVLASLII----RL-ALAETFCLNCG-ILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~i----r~-~la~~~~~~~~-~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.+|||+++.... . ++ ++++++...|. ++++|||+..++.. ...+..+|..+.+. ....|..+|++||+..
T Consensus 268 ~~s~G~~~~~~~-~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~-gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 268 ADRMMRPIPDPY-WKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQK-ARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHTTCCCBCTT-C---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHH-CGGGTEEEEEEESCCC
T ss_pred HhhcCCcccccc-cccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHH-hhhCCcEEEEEecCCc
Confidence 578888762100 0 00 12333445565 89999999998843 34556666666433 2345899999999987
No 173
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=80.65 E-value=0.16 Score=49.80 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=40.2
Q ss_pred HHHHHH-cCCccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeE-------EEeCCC---CCCCHHhHHHHHHHHHHH
Q 000957 1087 YKVLMQ-TGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGIL-------ALDEPT---TNLDGPNAESLAAALHRI 1155 (1209)
Q Consensus 1087 ~~~~~~-~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l-------~lDEp~---~~LD~~~~~~~~~~l~~~ 1155 (1209)
..++.. +++.+......|||||+| |++|||++..+|+++ +-|.|. -.+|......+++.|.+.
T Consensus 86 ~~~i~~~l~g~dt~i~EglSgGq~q------ri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~ 159 (171)
T 2f1r_A 86 DWIYERYLSDYDLVITEGFSKAGKD------RIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSL 159 (171)
T ss_dssp HHHHHHHTTTCSEEEEESCGGGCCC------EEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCEEEECCcCCCCCc------EEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHH
Confidence 344444 333332222349999999 999999999988763 224442 224566678888877655
No 174
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.67 E-value=22 Score=29.02 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000957 793 KAEEELEHLMEEKGQLDLDEKLLAEA 818 (1209)
Q Consensus 793 ~l~~~~~~l~~~i~~~~~~i~~~~~~ 818 (1209)
++..+++..-..|.-++.++++++.+
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444344433333
No 175
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=78.56 E-value=91 Score=36.21 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=33.7
Q ss_pred heeeccCCCCCCCCCchhhHHhhHHhhhh--hhhHHHHHHHHHHHHHHHH
Q 000957 48 VIFVHQDEANWPLQDPSTLKKKFDDIFSA--TRYTKALEVIKKLHKDQAQ 95 (1209)
Q Consensus 48 VifchQees~wpl~ep~~Lkk~fDdIf~a--~ky~kale~lk~~rke~~~ 95 (1209)
|.+.||.+...++ .|......||...+. ..|..++...+.+.+....
T Consensus 149 i~i~~q~~~~~l~-~~~~rr~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (517)
T 4ad8_A 149 LTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLER 197 (517)
T ss_dssp EEEESGGGGGTTT-SHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeCCchHHhcC-CHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Confidence 5677899888887 888888999987664 4666666666655555444
No 176
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=77.92 E-value=0.88 Score=51.37 Aligned_cols=55 Identities=7% Similarity=0.121 Sum_probs=43.1
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHH
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERF 1176 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~ 1176 (1209)
+.++++|..+++++++|+|+..|.+.....+...|..-+ ...|.+|+.||.|.+.
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L----~~~gi~I~~is~~d~~ 221 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSEL----VSNGVQIYQFPTDDES 221 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHH----BTTBCCCCCCC-----
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHH----HHcCCcEEecCCCchh
Confidence 678888888999999999999999999888888888632 4568899999986543
No 177
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=77.47 E-value=16 Score=31.43 Aligned_cols=27 Identities=19% Similarity=0.339 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHH
Q 000957 732 MEEIQLELSGSLSTKDNLQNELEKLRD 758 (1209)
Q Consensus 732 ~~e~~~~~~~l~~~~~~l~~e~~~l~~ 758 (1209)
++.+...+..+...+.....+++.++.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ 52 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKE 52 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333
No 178
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.45 E-value=42 Score=30.51 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000957 212 RESDISKLEREK 223 (1209)
Q Consensus 212 ~~~~~~~~~~~~ 223 (1209)
+...+..++..+
T Consensus 80 ~q~~i~~lE~eL 91 (129)
T 3tnu_B 80 ARNKLAELEEAL 91 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH
Confidence 333333333333
No 179
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=77.41 E-value=14 Score=31.50 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000957 159 LRKMQDQISTMTARRSTLFEQQQKQYAALA 188 (1209)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (1209)
|++..-....+.....++.++++-++..+.
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LE 40 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 444444445556666677777776666655
No 180
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.39 E-value=42 Score=30.50 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 202 KNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAY 240 (1209)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (1209)
+..+...+..++.++..+..++...-.++..+-+-.-.|
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 115 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLAL 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444443333333333333
No 181
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=76.71 E-value=38 Score=29.61 Aligned_cols=21 Identities=0% Similarity=-0.031 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000957 830 LSDYNDLKVKLNREYEEQAEQ 850 (1209)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~ 850 (1209)
...+.............++..
T Consensus 23 k~K~~~~~~e~~~~~~~Lq~E 43 (111)
T 2v66_B 23 KEKLEHQYAQSYKQVSVLEDD 43 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 182
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.64 E-value=13 Score=30.99 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHH
Q 000957 791 VKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKE 825 (1209)
Q Consensus 791 ~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~ 825 (1209)
....+..+..++..+..+.-...+++.+++.+..+
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444434444444333333
No 183
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.99 E-value=51 Score=30.72 Aligned_cols=27 Identities=19% Similarity=-0.026 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 890 SESEVKSCKIRTDEILVELDRFKDIVR 916 (1209)
Q Consensus 890 ~~~~i~~~~~~i~~l~~~i~~l~~~~~ 916 (1209)
++.....+...+.....-+..+...+.
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 184
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=75.47 E-value=24 Score=29.49 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHH
Q 000957 759 EQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSD 832 (1209)
Q Consensus 759 ~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~ 832 (1209)
.+......+...+..+..++..+......+..+.-+..++.=+......-+..-+.+..+.+.+...+..+...
T Consensus 10 ~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 10 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444555555555444444444444444444444444444444433
No 185
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=74.91 E-value=54 Score=30.50 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=10.3
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHH
Q 000957 817 EASGPLSKEKEKLLSDYNDLKVKLNRE 843 (1209)
Q Consensus 817 ~~l~~l~~~l~~l~~~~~~~~~~~~~~ 843 (1209)
..+......+..+...+..+....++.
T Consensus 10 eeLer~eerl~~a~~kLeeaek~adE~ 36 (147)
T 2b9c_A 10 EELDRAQERLATALQKLEEAEKAADES 36 (147)
T ss_dssp -CCGGGGTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444333333
No 186
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=74.67 E-value=3.3 Score=45.23 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=40.5
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCC-CcEEEEEec
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQE-NFQLIVITH 1172 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~-~~~~i~itH 1172 (1209)
+.||+|+.+ +++.|...+.+++++|.|+|+..++ .|...++.+. ... |..+|||-|
T Consensus 108 g~Ls~~e~~------~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~l~----~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWE------NLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRKLK----SQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHH------HHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHHHH----HHCTTEEEEEEEE
T ss_pred CCCCHHHHH------HHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHHHH----HhcCCCCEEEEec
Confidence 689999999 8888888778899999999975433 3444444442 223 789999864
No 187
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.89 E-value=43 Score=30.81 Aligned_cols=19 Identities=16% Similarity=-0.085 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhHHhHHHHH
Q 000957 732 MEEIQLELSGSLSTKDNLQ 750 (1209)
Q Consensus 732 ~~e~~~~~~~l~~~~~~l~ 750 (1209)
-+-++.-..-+..++..+.
T Consensus 27 ee~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445554555555555544
No 188
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=71.74 E-value=4.2 Score=45.20 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=43.2
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEe-CCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEe--cCHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALD-EPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVIT--HDER 1175 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lD-Ep~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~it--H~~~ 1175 (1209)
..+|+|+++ ++. +.+...++-++++| +|+.++|......+...+... . .+..+|+|. ||..
T Consensus 230 ~~~~~~~~~------~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~-----~-~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQ------AIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE-----F-KDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHH------HHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHH-----T-TTSCEEEEECCTTTC
T ss_pred hhhhHHHHH------HHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHh-----c-CCCCEEEEEECcccC
Confidence 357888877 433 33334567789999 999999998887777766654 1 266788887 8864
No 189
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.71 E-value=53 Score=28.93 Aligned_cols=67 Identities=25% Similarity=0.215 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHH---hhcccCCCCCCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 704 LFQEIQLWQKQVDDLEY---MLDSRGQGVRTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQ 771 (1209)
Q Consensus 704 l~~ei~~l~~ei~~l~~---~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~ 771 (1209)
+..++..+...+..++. .++..| +..+-......+.....++..+..++..+..++..+...+..+.
T Consensus 29 l~~~i~~l~~~l~~l~~~g~~CPvCg-s~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 29 LKNKIGDLKTAIEELKKAKGKCPVCG-RELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECTTTC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCC-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444432 234544 33343333344444555555555544444444444444343333
No 190
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=71.58 E-value=2.4 Score=46.79 Aligned_cols=57 Identities=14% Similarity=0.304 Sum_probs=47.9
Q ss_pred hhhhhhhhhcCCHHhhhhheeeccCCCCCCCCCchhhHHhhHHhhhhhhhHHHHHHHHH
Q 000957 30 MDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKK 88 (1209)
Q Consensus 30 ~d~~~~~~lgvs~ail~~VifchQees~wpl~ep~~Lkk~fDdIf~a~ky~kale~lk~ 88 (1209)
+...+..+ ++..+|-++++.+|++..+.+..|...++.|++||+..+|.++.+.++.
T Consensus 119 v~~~i~~l--~~~~~f~~~~~i~Qg~~~~il~~~~eR~~ll~~l~~~~~~~~~~~~l~~ 175 (339)
T 3qkt_A 119 ISAFMEKL--IPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSE 175 (339)
T ss_dssp HHHHHHHH--SCHHHHHHHTEECTTCTTGGGSCTTHHHHHHHHHHTTCTTHHHHHHHTT
T ss_pred HHHHHHHh--cCHHHhhhheEecchhHHHHHhChHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 33344444 4567899999999999999999999999999999999999988877665
No 191
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=71.12 E-value=2.5 Score=47.17 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=22.0
Q ss_pred CCChhhhhhhhHHHHHHHHHHh---cc--CCCeEEEeCCC
Q 000957 1103 RCSAGQKVLASLIIRLALAETF---CL--NCGILALDEPT 1137 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~---~~--~~~~l~lDEp~ 1137 (1209)
++|||+++ |.+|+++| +. +++++++|||+
T Consensus 296 ~~sld~~~------r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQ------RQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCS------HHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHH------HHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 58999999 99999998 66 89999999997
No 192
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.62 E-value=60 Score=28.76 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 202 KNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNI 237 (1209)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1209)
...+..+...++..+..++.++..+...+..+...+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555444444444444333
No 193
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=69.53 E-value=4.3 Score=46.49 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=34.5
Q ss_pred cCCCeEEEeCCCCCCCH-HhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1126 LNCGILALDEPTTNLDG-PNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~-~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
.+|++||+|||....+. .....|...+..+ ...|.++|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l-----~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNEL-----HDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHH-----HTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHH-----HHCCCeEEEEECCC
Confidence 38999999999987764 5667777777766 34578999999973
No 194
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=69.22 E-value=0.52 Score=47.53 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=40.2
Q ss_pred HhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccC---CCcEEEEEecCHHHH
Q 000957 1123 TFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQ---ENFQLIVITHDERFA 1177 (1209)
Q Consensus 1123 ~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~---~~~~~i~itH~~~~~ 1177 (1209)
+|+.+|++++|||||+++|..+...+...|.......... ..+-.||+-++.+..
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd~le~a 177 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKA 177 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSEEEECSSHHHH
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCceEEEECCCHHHH
Confidence 6788999999999999999999988888777664332211 345567777775543
No 195
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=68.48 E-value=3.1 Score=46.80 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=38.6
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHh
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQ 1184 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~ 1184 (1209)
..|.+||||||+.. |+.....|...+..+... ...++.||++||+..+...+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~--~~~~~~iI~~~~~~~~~~~l~~~~ 179 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKL--GAFRIALVIVGHNDAVLNNLDPST 179 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHH--SSCCEEEEEEESSTHHHHTSCHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCC--CcCCEEEEEEECCchHHHHhCHHh
Confidence 45789999999876 877766666655443110 014789999999998777665443
No 196
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.00 E-value=9.5 Score=34.54 Aligned_cols=24 Identities=8% Similarity=0.267 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 888 SQSESEVKSCKIRTDEILVELDRF 911 (1209)
Q Consensus 888 ~~~~~~i~~~~~~i~~l~~~i~~l 911 (1209)
..++.++.....-+..++..+..|
T Consensus 106 ~~L~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 106 KRLTEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp HHHHHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 197
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=66.31 E-value=1.3 Score=43.65 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=35.3
Q ss_pred cchhhhhhhhhcCCHHhhhhheeeccCCCCCCC-CCchhhHHhhHHhhhhhhhHHHHHHHH
Q 000957 28 ADMDREVPALMGVSKAILENVIFVHQDEANWPL-QDPSTLKKKFDDIFSATRYTKALEVIK 87 (1209)
Q Consensus 28 ~~~d~~~~~~lgvs~ail~~VifchQees~wpl-~ep~~Lkk~fDdIf~a~ky~kale~lk 87 (1209)
.++...++. +|+++.-+ -|+.|++....+ ..|+.+++.||++||+..|.+..+.+.
T Consensus 124 ~~~~~~l~~-~~l~~~~~---~~~~qg~~~~l~~~~~~~r~~~ld~~~g~~~~~~~~~~~~ 180 (182)
T 3kta_A 124 SEILDILTA-AMISPDGY---NIVLQGDITKFIKMSPLERRLLIDDISGIAEYDSKKEKAL 180 (182)
T ss_dssp HHHHHHHHH-TTCCTTCT---TEECTTCTTHHHHSCHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHH-cCCCCCCC---EEEEcccHHHHHhCCHHHHHHHHHHHHChHHHHHHHHHHh
Confidence 455555555 78887544 478999988765 489999999999999999998776543
No 198
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=66.14 E-value=59 Score=28.45 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000957 825 EKEKLLSDYNDLKVKLNREYEE 846 (1209)
Q Consensus 825 ~l~~l~~~~~~~~~~~~~~~~~ 846 (1209)
.+..+...+...+.........
T Consensus 60 ~L~~Lqq~fsq~q~~vq~qL~~ 81 (112)
T 1x79_B 60 LLEELQQGLSQAKRDVQEQMAV 81 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 199
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=66.13 E-value=1.4 Score=43.79 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=32.0
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRI 1155 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~ 1155 (1209)
..+|+|+++ +++++|++..+|+++ +|+..+..+...+..+
T Consensus 108 ~~ls~~~~~------~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 108 HYIVLRTTA------AEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp EEEEEECCH------HHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred EEEEecCCH------HHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 469999999 999999999988876 6887777666655443
No 200
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=65.90 E-value=4.9 Score=43.30 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=33.4
Q ss_pred CCCChhhhhhhhHHHHH---HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRL---ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRI 1155 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~---~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~ 1155 (1209)
...|||+.+ ++ +|++++..+|+++|+|+|.. +.+...+...|..+
T Consensus 164 ~~~s~~~~~------~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 164 SHSEGADPA------AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp CCSTTCCHH------HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred ecCCccCHH------HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 457899988 55 78888889999999999974 34455555555554
No 201
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=65.27 E-value=4.3 Score=40.28 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHH
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRI 1155 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~ 1155 (1209)
.+.+|++|+..|+++++| |++||+.++..+...|...
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 456788888999999999 9999999999999887654
No 202
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=64.76 E-value=0.26 Score=55.21 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=50.4
Q ss_pred CC--CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhh-hhcCc-EEeecC
Q 000957 1127 NC--GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQH-AEKYY-RVAKDD 1196 (1209)
Q Consensus 1127 ~~--~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~-~~~~~-~v~~~~ 1196 (1209)
+| +++++|||+.++|+..+...+..+..+. ...|.++ +||+...+..+|+++. .+..| ++.+.+
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~----~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~ 206 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKIT----SRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKG 206 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGS
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHH----HhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecC
Confidence 67 8899999999999999988887776541 2235554 3999999999999988 77788 776665
No 203
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=64.63 E-value=71 Score=27.73 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 202 KNNFEGIVAKRESDISKLEREKNDMDTKIKFL 233 (1209)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1209)
...+......+...+..++.++..+...+..+
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 204
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.45 E-value=65 Score=27.27 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 000957 704 LFQEIQLWQKQVDDLEYMLD 723 (1209)
Q Consensus 704 l~~ei~~l~~ei~~l~~~l~ 723 (1209)
.......++.++++|...|+
T Consensus 45 aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777776665
No 205
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.38 E-value=1.2e+02 Score=34.16 Aligned_cols=12 Identities=0% Similarity=0.324 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 000957 903 EILVELDRFKDI 914 (1209)
Q Consensus 903 ~l~~~i~~l~~~ 914 (1209)
.+..+|..|+..
T Consensus 179 ~l~~ki~~l~~~ 190 (464)
T 1m1j_B 179 SLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 206
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.51 E-value=63 Score=28.62 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000957 158 DLRKMQDQISTMTARRSTLFEQQQKQYAAL 187 (1209)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (1209)
.|..+..++..+...+..+...+.++...+
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~ 43 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKAL 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 207
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.37 E-value=69 Score=26.15 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=6.3
Q ss_pred HHHHHHhHHHHHHHHH
Q 000957 240 YTAEITNLLSEAGAHM 255 (1209)
Q Consensus 240 l~~e~~~l~~~~~~~~ 255 (1209)
+..+..+|..+...++
T Consensus 53 L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 53 LERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 208
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=60.22 E-value=35 Score=29.07 Aligned_cols=60 Identities=7% Similarity=0.129 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Q 000957 199 KNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDSTI 265 (1209)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~ 265 (1209)
.-.++-+...+.+.+..+..+.++..+....+..+. .....|..++..+...+.+|+.+|
T Consensus 29 ~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~K-------r~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 29 MYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREK-------HAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443333 444444444444444555555544
No 209
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.03 E-value=26 Score=28.54 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000957 834 NDLKVKLNREYEEQAEQ 850 (1209)
Q Consensus 834 ~~~~~~~~~~~~~~~~~ 850 (1209)
..++.++....+.+..+
T Consensus 44 ~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 44 ERARAEVGRAAQLLDVS 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 33333333333333333
No 210
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.26 E-value=93 Score=27.01 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 757 RDEQRYMENDLSNIQIRWHTLREEKV 782 (1209)
Q Consensus 757 ~~~~~~~~~~l~~l~~~~~~l~~~~~ 782 (1209)
+.++...+.-+...+......+.-+.
T Consensus 31 q~qLTqAQe~l~~~eaQAaTCNqTV~ 56 (121)
T 3mq7_A 31 QQELTEAQKGFQDVEAQAATANHTVM 56 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333433333333333
No 211
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=58.19 E-value=93 Score=27.74 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=17.6
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 738 ELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKV 782 (1209)
Q Consensus 738 ~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~ 782 (1209)
.++.+..++..++.+++.+..+- +.-+..+.+.++.+..++.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~---q~~v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTES---QRVVLQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443332 2223344444444444443
No 212
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.18 E-value=64 Score=25.71 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000957 834 NDLKVKLNREYEEQAEQ 850 (1209)
Q Consensus 834 ~~~~~~~~~~~~~~~~~ 850 (1209)
..++.++....+.+..+
T Consensus 38 ~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 38 DAFRSNLKTLLEILDGK 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 33333333333333333
No 213
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.53 E-value=74 Score=27.59 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 159 LRKMQDQISTMTARRSTLFEQQQK 182 (1209)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1209)
|..+..++..+...+..+..++.+
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e 33 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINE 33 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 214
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.24 E-value=93 Score=26.37 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhHHhHHHHHHHHHHH
Q 000957 732 MEEIQLELSGSLSTKDNLQNELEKL 756 (1209)
Q Consensus 732 ~~e~~~~~~~l~~~~~~l~~e~~~l 756 (1209)
++.++..+..+..+......++..+
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L 31 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRL 31 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3333333433333333333333333
No 215
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.68 E-value=1e+02 Score=26.30 Aligned_cols=9 Identities=0% Similarity=-0.149 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 000957 209 VAKRESDIS 217 (1209)
Q Consensus 209 ~~~~~~~~~ 217 (1209)
+..+..++-
T Consensus 62 yn~~~~ql~ 70 (96)
T 3q8t_A 62 YSEFKRQQL 70 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 216
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=54.59 E-value=13 Score=39.86 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=21.0
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCH
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDG 1142 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~ 1142 (1209)
+..+..+....|++|++||+++.++.
T Consensus 103 ~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 103 RALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp HHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred HHHHHHHHHcCCcEEEeccHHHhccc
Confidence 66666666688999999999987764
No 217
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.37 E-value=42 Score=26.66 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 196 EELKNWKNNFEGIVAKRESDISKLE 220 (1209)
Q Consensus 196 ~eL~~~~~~~~~~~~~~~~~~~~~~ 220 (1209)
.+|+..+..-.+.+......+..++
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLE 46 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 218
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=50.92 E-value=1.9e+02 Score=28.32 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=25.6
Q ss_pred HhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 68 KKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESI 121 (1209)
Q Consensus 68 k~fDdIf~a~ky~kale~lk~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~~i 121 (1209)
+.|++|. ...|......+...-.-...+-+.++.+.+.+...+.........+
T Consensus 51 ~LY~qI~-~~~~~~v~~~adqa~~nv~eRek~l~kEk~si~~s~kef~~~k~~i 103 (199)
T 2ap3_A 51 KLTEDVN-SKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHV 103 (199)
T ss_dssp TTTTGGG-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHH-HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777 4455554444444444444455555555555554444444333333
No 219
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.06 E-value=1.2e+02 Score=27.98 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000957 826 KEKLLSDYNDLKVKL 840 (1209)
Q Consensus 826 l~~l~~~~~~~~~~~ 840 (1209)
+..++..+..++.++
T Consensus 112 ~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 112 NNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 220
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=49.06 E-value=3.3e+02 Score=30.64 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=20.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000957 922 RRNIEDNLNYRETKAKVDKFASEIESLEERVLKI 955 (1209)
Q Consensus 922 ~~~l~~n~~~~~~~~~l~~l~~ei~~l~~~~~~~ 955 (1209)
+..+.++..|.+.-.+..++..=|.+.+.-+..-
T Consensus 192 ~~~L~~a~~~~QF~~Da~EaesWL~eke~~l~s~ 225 (450)
T 3r6n_A 192 DVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKK 225 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 3346666666666666666666666665555443
No 221
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=47.88 E-value=12 Score=37.02 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHh
Q 000957 1118 LALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMED 1158 (1209)
Q Consensus 1118 ~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~ 1158 (1209)
...|++|+..|+++++| |+++|+.++..+...|...+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHHHH
Confidence 34577788889999999 9999999999999988876543
No 222
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.62 E-value=1.2e+02 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000957 209 VAKRESDISKLEREKNDM 226 (1209)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~ 226 (1209)
+..+...+..++.++..+
T Consensus 30 l~~~q~~i~~lE~el~~~ 47 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEM 47 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 223
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.45 E-value=3.6e+02 Score=30.65 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000957 198 LKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITN 246 (1209)
Q Consensus 198 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 246 (1209)
+....+.++....+.+.++....+.....+.+...+.++..++....+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 3333444444444444444333333333333333333333333333333
No 224
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=46.98 E-value=85 Score=24.94 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000957 395 EFEINIRQKQSELFAMDQKIKALNREKDVLA 425 (1209)
Q Consensus 395 ~~~~~i~~~~~~i~~l~~el~~l~~e~~~l~ 425 (1209)
..+..|..++.++.+.+.++..|..+++.+.
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566666666666666666666666553
No 225
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=46.61 E-value=8.7 Score=42.91 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=32.7
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHh
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQ 1184 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~ 1184 (1209)
..|.+||+|||....+......+..++. .+... ...+..||++||+..+...+....
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~-~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~ 183 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSR-INSEV-NKSKISFIGITNDVKFVDLLDPRV 183 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHH-HHHSC-CC--EEEEEEESCGGGGGGCTTHH
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhh-chhhc-CCCeEEEEEEECCCChHhhhCHHH
Confidence 3488999999988764322222333222 22111 234678999999988766554443
No 226
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=44.23 E-value=23 Score=38.32 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=37.9
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcE--EEEEec
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQ--LIVITH 1172 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~--~i~itH 1172 (1209)
||+|+.+ +++.|...+.++++++.|+|+.. ...|...++.+. ...|.. +|||-|
T Consensus 134 l~~~~~~------~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~----~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWG------KLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTK----RKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHH------HHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHH----HTSSSCCEEEEEEC
T ss_pred CCHHHHH------HHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHH----HhcCCCCeEEEEeC
Confidence 8999988 77777777778899999999743 334445555553 234566 888855
No 227
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=43.43 E-value=21 Score=39.36 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=41.8
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcC
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKY 1189 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~ 1189 (1209)
+-.|+.++...|+.+++|||+.+ .+..+|..+ .....++|.++|... +...++++.....
T Consensus 242 ~~~i~~~l~~~pd~~l~~e~r~~-------~~~~~l~~l-----~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 242 ATLLRSCLRMKPTRILLAELRGG-------EAYDFINVA-----ASGHGGSITSCHAGS-CELTFERLALMVL 301 (361)
T ss_dssp HHHHHHHTTSCCSEEEESCCCST-------HHHHHHHHH-----HTTCCSCEEEEECSS-HHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEcCchHH-------HHHHHHHHH-----hcCCCeEEEEECCCC-HHHHHHHHHHHHh
Confidence 78888888889999999999862 233445444 122346788999976 6667777665544
No 228
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=40.97 E-value=4e+02 Score=29.34 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000957 212 RESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSE 250 (1209)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~ 250 (1209)
++.++..++..+..--..+..|+..+..+..++.+|+..
T Consensus 116 Le~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 116 LRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444343333334444444444444444444433
No 229
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=40.64 E-value=0.31 Score=56.98 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=40.2
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEE--EecCHHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIV--ITHDERFAQL 1179 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~--itH~~~~~~~ 1179 (1209)
..+|||+++ |++++ ++ | |+||||.+...+...|..+ ...|.++|+ +||+++.++.
T Consensus 399 ~~~s~G~~~------R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~-----~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 399 MWVRGNTRL------RRTKE----------VN-E-ILGIDPVDKNLLVNQFVKW-----DPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp EEESSSCEE------EEEEE----------EE-E-EEECCSSSSCCEEEEEEEE-----ETTTTEEEECSCCTHHHHHHH
T ss_pred EEEeCCCce------EEEEE----------EE-E-EcCcccCCCeEEEEEeEEE-----cccCCEEEEcccHHHHHHHHH
Confidence 357999988 43332 12 6 9999987766555544433 334678874 8999999998
Q ss_pred hhhH
Q 000957 1180 IGQR 1183 (1209)
Q Consensus 1180 ~~~~ 1183 (1209)
+|+.
T Consensus 456 ~~g~ 459 (511)
T 2oap_1 456 FLGV 459 (511)
T ss_dssp HHTS
T ss_pred HcCC
Confidence 8753
No 230
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=40.34 E-value=7.4 Score=44.44 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=16.3
Q ss_pred eeccCCCCCCCC-CchhhHHhhHHhhhhhhhHHHHHHHHH
Q 000957 50 FVHQDEANWPLQ-DPSTLKKKFDDIFSATRYTKALEVIKK 88 (1209)
Q Consensus 50 fchQees~wpl~-ep~~Lkk~fDdIf~a~ky~kale~lk~ 88 (1209)
|.+|.+...-+. .|+.+.+.||++||...|.+.++.++.
T Consensus 148 ~i~qg~~~~l~~~~p~eRr~~ld~~~g~~~~~~~~~~~~~ 187 (430)
T 1w1w_A 148 LVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKE 187 (430)
T ss_dssp EECTTCTTHHHHSCHHHHHHTC------------------
T ss_pred eeehHhHHHHHhCCHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 456777666665 799999999999999999887766554
No 231
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=40.22 E-value=1.8e+02 Score=25.18 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=20.4
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000957 669 QKSQAFDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDD 717 (1209)
Q Consensus 669 ~l~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ei~~l~~ei~~ 717 (1209)
.....++++..-+...+..+.....+-.++..+.........+..+|..
T Consensus 6 ~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~ 54 (119)
T 3uun_A 6 RYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTA 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333333333444444444444444444443
No 232
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.17 E-value=1.2e+02 Score=23.01 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000957 221 REKNDMDTKIKFLEQNIDAYTAEITNL 247 (1209)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~l~~e~~~l 247 (1209)
..+..+...+..+...++.....+..+
T Consensus 26 ~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 26 DEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 233
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=39.85 E-value=47 Score=34.92 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=36.7
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCC----------CHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1117 RLALAETFCLNCGILALDEPTTNL----------DGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~L----------D~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
+-.+..+....|.+||+||...-. ++.....|..++..+ .......++.||.+|+....+
T Consensus 100 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 100 KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM-DGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH-HTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh-hCCCCCCCEEEEEeCCCchhc
Confidence 444444555778999999986542 555566666666554 211223456788888876443
No 234
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=38.15 E-value=4.7e+02 Score=29.30 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000957 402 QKQSELFAMDQKIKALNREKDV 423 (1209)
Q Consensus 402 ~~~~~i~~l~~el~~l~~e~~~ 423 (1209)
..+..+..-+.++......+..
T Consensus 84 eY~~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 84 DYPVKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444443
No 235
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.12 E-value=3.5e+02 Score=30.83 Aligned_cols=7 Identities=0% Similarity=0.216 Sum_probs=3.0
Q ss_pred hhhhhhc
Q 000957 33 EVPALMG 39 (1209)
Q Consensus 33 ~~~~~lg 39 (1209)
.+|..+|
T Consensus 253 ~~~~~~~ 259 (487)
T 3oja_A 253 TLRDFFS 259 (487)
T ss_dssp HHHHHHT
T ss_pred chHHHHH
Confidence 3444444
No 236
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=37.22 E-value=1.7e+02 Score=23.75 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 204 NFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDA 239 (1209)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1209)
.+.-++.+++.+....+.++..-...+..++..+..
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333333333333333333333333333333333333
No 237
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.08 E-value=2e+02 Score=25.53 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000957 745 TKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRD 790 (1209)
Q Consensus 745 ~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~ 790 (1209)
.|..|..++..++.+++.+. ......+..++..+..++..+..
T Consensus 16 ~Ie~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554442 33344455555555555555443
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=36.05 E-value=16 Score=39.88 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=38.7
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhcc------CCCeEEEeCCCCCCCHHhHHHHHHHHHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCL------NCGILALDEPTTNLDGPNAESLAAALHRIME 1157 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~------~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~ 1157 (1209)
..+|+|+++ ++..+.+++. .|++++ |+++|+.++..|.+.|.++..
T Consensus 209 ~~~s~~~~~------~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAAS------EYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHH------HHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHH------HHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 357999999 8888888776 477776 999999999999999998854
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=35.71 E-value=18 Score=39.25 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=29.3
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1119 ALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1119 ~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.+++++..++++++||.+| +.| +...+..+. ...+.++||+||...
T Consensus 235 ~i~ral~~de~llvLDa~t-~~~------~~~~~~~~~----~~~~it~iilTKlD~ 280 (328)
T 3e70_C 235 KIARVTKPNLVIFVGDALA-GNA------IVEQARQFN----EAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHHCCSEEEEEEEGGG-TTH------HHHHHHHHH----HHSCCCEEEEECGGG
T ss_pred HHHHHhcCCCCEEEEecHH-HHH------HHHHHHHHH----HhcCCCEEEEeCcCC
Confidence 3677887788899999555 433 233333331 224789999999553
No 240
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=35.61 E-value=4.8e+02 Score=28.64 Aligned_cols=38 Identities=11% Similarity=0.259 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000957 114 AYKLRESISQDQEKTEALKNQMQELEKSIQDIDDKIHH 151 (1209)
Q Consensus 114 a~~~~~~i~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~ 151 (1209)
....+..+...+.-+.+++........+.......+..
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a 395 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNA 395 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555544444444444443
No 241
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=35.20 E-value=1.7e+02 Score=25.41 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 000957 697 PVETADRLFQEIQLWQKQVDD 717 (1209)
Q Consensus 697 ~~~~i~~l~~ei~~l~~ei~~ 717 (1209)
++..+.........+..+|..
T Consensus 34 d~~~v~~~l~~h~~l~~ei~~ 54 (118)
T 3uul_A 34 DVEDVKEQFATHETFMMELSA 54 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 242
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=35.16 E-value=2.3e+02 Score=24.78 Aligned_cols=31 Identities=6% Similarity=0.171 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 203 NNFEGIVAKRESDISKLEREKNDMDTKIKFL 233 (1209)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1209)
..|..-......++..+.........++..+
T Consensus 66 q~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 66 QGLSQAKRDVQEQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443333333333
No 243
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=34.69 E-value=29 Score=34.21 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=30.2
Q ss_pred HHHHHHhc--cCCCeEEEeCCCCC--CCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCH
Q 000957 1118 LALAETFC--LNCGILALDEPTTN--LDGPNAESLAAALHRIMEDRKGQENFQLIVITHDE 1174 (1209)
Q Consensus 1118 ~~la~~~~--~~~~~l~lDEp~~~--LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~ 1174 (1209)
+..++..+ ..++++||||.+.+ ++......|..+|.. ...+..||+++.+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~------Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA------RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT------SCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh------CcCCCEEEEECCCC
Confidence 33344444 56899999999763 333444455554442 23456777777743
No 244
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.60 E-value=76 Score=35.76 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=38.0
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCC----------CHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1117 RLALAETFCLNCGILALDEPTTNL----------DGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~L----------D~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
|-.+..|-...|.++|+||.++-. |......+..+|..+ +......+.-||..|..++.+.
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l-Dg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQM-DGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHH-HSSSCTTSSEEEEEESSTTSSC
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHh-hcccCCCCeEEEEecCCchhhC
Confidence 666666666889999999998754 222333444444443 3322334567788898887664
No 245
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.45 E-value=97 Score=25.22 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 195 DEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKI 230 (1209)
Q Consensus 195 ~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1209)
+..+...+..++.++.-.+..++.+..-+......+
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~I 44 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTG 44 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333333333
No 246
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.93 E-value=36 Score=28.10 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHH
Q 000957 967 KHLLERDRLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKR 1011 (1209)
Q Consensus 967 ~l~~~~~~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~ 1011 (1209)
.+...+..+..++..+.|.+..+.-++..+...-. ..|.+++.+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr-d~Y~dLD~R 67 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK-QILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHH
No 247
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=33.78 E-value=2.3e+02 Score=24.48 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=34.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 782 VKAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINF 854 (1209)
Q Consensus 782 ~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l 854 (1209)
..++..+...+.+...+......+..+...-..+-..-.........+...+..+.................|
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (118)
T 3uul_A 36 EDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRL 108 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555554444444333233333344455555555555555544444443333
No 248
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=33.60 E-value=1.9e+02 Score=23.47 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000957 207 GIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEA 251 (1209)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~ 251 (1209)
.++...+.+-..++.++..++..+...+.+.+.+..++..+...+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443333
No 249
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=33.39 E-value=2.1e+02 Score=23.74 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 204 NFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEIT 245 (1209)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 245 (1209)
.+...+..++.++..+..++...-.++..+-+-.-.+..++.
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333344444444444444443333333333333333333333
No 250
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.24 E-value=1.6e+02 Score=24.21 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=20.1
Q ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHhchhhhhhHHHHHHHH
Q 000957 974 RLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQ 1015 (1209)
Q Consensus 974 ~l~~~~~~~~g~~~~l~~~i~~~~~el~~~~y~~~~~~y~~~ 1015 (1209)
.|.+....+..++..+..++..+..++.......+-++|-..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~ 46 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDL 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 344444445555555555666666555522233333444433
No 251
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=32.57 E-value=3.1e+02 Score=27.17 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000957 743 LSTKDNLQNELEKLRDEQRYMEND-LSNIQIRWHTLREEKVKAA 785 (1209)
Q Consensus 743 ~~~~~~l~~e~~~l~~~~~~~~~~-l~~l~~~~~~l~~~~~~~~ 785 (1209)
......+..+++++......++.. +...-.-+|+.+.++.+++
T Consensus 152 ~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 152 LRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333334444444444444444432 3445555666666666655
No 252
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.09 E-value=2.3e+02 Score=23.94 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 85 VIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKN 133 (1209)
Q Consensus 85 ~lk~~rke~~~~lK~~~~~l~~lk~~ke~a~~~~~~i~~~~~~~~~l~~ 133 (1209)
.......++..+|+.+..++..+...-.+++.++.+..-+...++....
T Consensus 44 ~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 44 QVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777777777777766666666666555555555443
No 253
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=32.02 E-value=13 Score=44.69 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCCChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHH
Q 000957 1102 GRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHR 1154 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~ 1154 (1209)
+.+|+|+.+ ++........++++|||||+.. |++.....|...|.+
T Consensus 182 g~~~~g~~~------~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHE------RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGG------GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccc------cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 568999888 6555555667899999999998 898877777776653
No 254
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.01 E-value=2.5e+02 Score=24.37 Aligned_cols=10 Identities=20% Similarity=0.109 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 000957 178 EQQQKQYAAL 187 (1209)
Q Consensus 178 ~~~~~l~~~~ 187 (1209)
.....|..++
T Consensus 53 qTV~tL~~SL 62 (121)
T 3mq7_A 53 HTVMALMASL 62 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 255
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=31.84 E-value=27 Score=35.45 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=30.3
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
..|.++|+||+.. ||+.....|...+.. ...+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~------~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEE------PPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHS------CCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhc------CCCceEEEEEeCChH
Confidence 3578999999876 777766666554432 235678899998765
No 256
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=31.07 E-value=1.5e+02 Score=21.36 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=20.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 741 GSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKV 782 (1209)
Q Consensus 741 ~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~ 782 (1209)
++-.+...++.+-..+++++.+-...++.++.+-..++.-+.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 333444444445555555555555555555555555444443
No 257
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=30.69 E-value=5.9 Score=40.69 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=35.4
Q ss_pred hccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhcCcEEe
Q 000957 1124 FCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVA 1193 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~~~~v~ 1193 (1209)
|+.+|+..+|+++..+.|..+...+...|............+.+||++|+.+.+..-...++....++..
T Consensus 145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~ 214 (231)
T 3lnc_A 145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTC 214 (231)
T ss_dssp EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGG
T ss_pred EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccc
Confidence 4567888889999999988777777666665543322233578899999987766555555444344433
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=30.34 E-value=0.22 Score=52.71 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=29.5
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCe--EEEeCCCCCCCHH
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGI--LALDEPTTNLDGP 1143 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~--l~lDEp~~~LD~~ 1143 (1209)
.+||| + |+++++++..+|++ +|+|++|+.||..
T Consensus 172 ~~~~G--~------R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 206 (261)
T 2eyu_A 172 PKIGG--G------RVLAYGLLIPNTAIRNLIRENKLQQVYSL 206 (261)
T ss_dssp CCSSS--S------SEEEEEEECCCHHHHHHHHHTCHHHHHHH
T ss_pred ecCCC--C------EEEEEEEecCCHHHHHHHHcCCHHHHHHH
Confidence 57889 7 77899999999999 9999999999875
No 259
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=30.09 E-value=50 Score=35.58 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=28.9
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.+++++|+||+..--.......|...+... ..++.||++|....
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~------~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAY------SSNCSIIITANNID 147 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHH------GGGCEEEEEESSGG
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhC------CCCcEEEEEeCCcc
Confidence 478999999997532144455555555443 24578899988765
No 260
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=29.70 E-value=33 Score=37.10 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=29.5
Q ss_pred cCCCeEEEeCCCCCC-CHHhHHHHHHHHHHHHHhhccCCCcEEEEEecC
Q 000957 1126 LNCGILALDEPTTNL-DGPNAESLAAALHRIMEDRKGQENFQLIVITHD 1173 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~L-D~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~ 1173 (1209)
.+|++|++||+..-- ++.....|...+..+. ..|.++|++|+.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~-----~~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-----LLEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-----HTTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHH-----HCCCeEEEEecC
Confidence 569999999997632 3356667777776652 345677777763
No 261
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.49 E-value=6.1e+02 Score=27.97 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=5.6
Q ss_pred HHhhHHHHHHHHHH
Q 000957 804 EKGQLDLDEKLLAE 817 (1209)
Q Consensus 804 ~i~~~~~~i~~~~~ 817 (1209)
.|..+...+..+..
T Consensus 120 ~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 120 KITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 262
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.06 E-value=2.7e+02 Score=23.74 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=42.8
Q ss_pred HHhhHhhhhhHHHHHHHHhhHhHHHHHHhccccCcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000957 619 KVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQAFDDVLGVLAQIK 685 (1209)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~~l~~le~~l~~l~~~l~~l~~~~e~~~~~l~~~~ 685 (1209)
..+..++.......+.+..+..++..-+.+- .-..++.+|......|+.+..++..+...+.++.
T Consensus 25 ~el~~ei~ke~~~regl~Km~~vY~~nP~~G--D~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 25 EERSRELQKEVDQREALKKMKDVYEKTPQMG--DPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHCGGGC--CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777777677777777777777777774 3334466666777677666666666665555543
No 263
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.45 E-value=2.2e+02 Score=23.69 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 399 NIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVKLALKKAELENHKKKHKKIIDEYK 456 (1209)
Q Consensus 399 ~i~~~~~~i~~l~~el~~l~~e~~~l~~~~~~~~~l~~~~~~l~~k~~~l~~~~~~~~ 456 (1209)
++..+...|..++.++..|+..+..-.--.....++..+..++......+......+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777765332222234555555555555555555555443
No 264
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=27.64 E-value=4.5e+02 Score=26.26 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=13.1
Q ss_pred CHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Q 000957 731 TMEEIQLELSGSLSTKDNLQNELEKLRDEQ 760 (1209)
Q Consensus 731 ~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~ 760 (1209)
++..+....+.+..++.-+.-+..-...++
T Consensus 150 Sl~~Lkk~~~~i~~~LelL~IRK~ma~sEI 179 (242)
T 3uux_B 150 SPSALKSFSQTLVNSLEFLNIQKNSTLSEI 179 (242)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444555555444444444443333333333
No 265
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.85 E-value=6.7 Score=33.52 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=14.3
Q ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHH
Q 000957 738 ELSGSLSTKDNLQNELEKLRDEQRYMEN 765 (1209)
Q Consensus 738 ~~~~l~~~~~~l~~e~~~l~~~~~~~~~ 765 (1209)
.+..+..++..|+.+.+.|+.++..++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444443
No 266
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=26.50 E-value=1.8e+02 Score=20.91 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHhhHHhHHHHH
Q 000957 708 IQLWQKQVDDLEYMLDSRGQGVRTMEEIQLELSGSLSTKDNLQ 750 (1209)
Q Consensus 708 i~~l~~ei~~l~~~l~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 750 (1209)
+..++..+..++..+...+ ....++++....+++..++..+.
T Consensus 4 vkaleekvkaleekvkalg-gggrieelkkkweelkkkieelg 45 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALG-GGGRIEELKKKWEELKKKIEELG 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CSSSHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHhC
Confidence 3445556666666665555 56677778777777777766654
No 267
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.44 E-value=2.8e+02 Score=23.05 Aligned_cols=27 Identities=11% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000957 930 NYRETKAKVDKFASEIESLEERVLKIG 956 (1209)
Q Consensus 930 ~~~~~~~~l~~l~~ei~~l~~~~~~~~ 956 (1209)
.+..+...|..++.+|..|+.+++.-+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 344555566666677777777766544
No 268
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=26.39 E-value=2.7 Score=49.30 Aligned_cols=63 Identities=8% Similarity=0.024 Sum_probs=43.4
Q ss_pred HHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH--HHhhhHhhhhcCcEEee
Q 000957 1122 ETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFA--QLIGQRQHAEKYYRVAK 1194 (1209)
Q Consensus 1122 ~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~--~~~~~~~~~~~~~~v~~ 1194 (1209)
++|.-+ ++|++ ||++++||..+ .+. .++ ....+.++.||||++..+ ..+++.+....-+++..
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~~v-~l~---~eL----t~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~ 92 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIADEV-DLT---SAL----TRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIH 92 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGGGC-BCC---EES----SSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEEC
T ss_pred cccccC-cEEec-cCccCCCccee-EEE---eec----cCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEe
Confidence 467777 99999 99999999432 111 112 223456789999999888 77777777666666653
No 269
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=25.71 E-value=50 Score=39.31 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=37.8
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEec
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITH 1172 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH 1172 (1209)
...+.+.++.+|..++|+.+|+++|..+.. ...++..+ ....+.+|+|+||
T Consensus 173 i~~li~~~l~~~~~iil~vvt~~~d~a~~~-~l~la~~v----~~~g~rtI~VlTK 223 (608)
T 3szr_A 173 IKTLIKKYIQRQETISLVVVPSNVDIATTE-ALSMAQEV----DPEGDRTIGILTK 223 (608)
T ss_dssp HHHHHHHHTTSSSCCEEEEEESSSCTTTCH-HHHHHHHH----CSSCCSEEEEEEC
T ss_pred HHHHHHHHHhcCCCCceEEEeccchhccHH-HHHHHHHH----hhcCCceEEEecc
Confidence 566777778889899999999999988654 44555555 2233468999999
No 270
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.41 E-value=2.7e+02 Score=22.54 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000957 735 IQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVK 792 (1209)
Q Consensus 735 ~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~ 792 (1209)
++..+...+.++..+++--+.|......+...+..++.+-..+...+.-++.+...+.
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 271
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.99 E-value=2.4e+02 Score=21.88 Aligned_cols=44 Identities=23% Similarity=0.095 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhhh
Q 000957 937 KVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNR 981 (1209)
Q Consensus 937 ~l~~l~~ei~~l~~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~ 981 (1209)
.+..+..++..+..++......+. =..+.+|+..++.+..++..
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDe-FAKWaKL~Rk~DKl~~ele~ 50 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDN-YAKWTKNNRKLDSLDKEINN 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666665222 23444444444444444433
No 272
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=24.27 E-value=58 Score=37.31 Aligned_cols=74 Identities=9% Similarity=-0.039 Sum_probs=38.1
Q ss_pred HHHHHHHhc-cCC-CeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHHHhhhHhhhhc--CcEE
Q 000957 1117 RLALAETFC-LNC-GILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEK--YYRV 1192 (1209)
Q Consensus 1117 r~~la~~~~-~~~-~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~~~~~~~~~~~--~~~v 1192 (1209)
++.+++++. ..| .+|+...||+|.|... .+..+.. ..|.+.||+||- +.....+..+.+.+ -..|
T Consensus 400 iv~iar~l~~~~P~evLLvLDattGq~al~---~ak~f~~-------~~~itgvIlTKL-D~takgG~~lsi~~~~~~PI 468 (503)
T 2yhs_A 400 IVRVMKKLDVEAPHEVMLTIDASTGQNAVS---QAKLFHE-------AVGLTGITLTKL-DGTAKGGVIFSVADQFGIPI 468 (503)
T ss_dssp HHHHHHTTCTTCSSEEEEEEEGGGTHHHHH---HHHHHHH-------HTCCSEEEEECG-GGCSCCTHHHHHHHHHCCCE
T ss_pred HHHHHHHhccCCCCeeEEEecCcccHHHHH---HHHHHHh-------hcCCCEEEEEcC-CCcccccHHHHHHHHHCCCE
Confidence 566666553 334 3444444888865432 2222322 246789999993 33333333333332 2356
Q ss_pred eecCCcccc
Q 000957 1193 AKDDHQHSI 1201 (1209)
Q Consensus 1193 ~~~~~~~s~ 1201 (1209)
.+.|.|..+
T Consensus 469 ~fig~Ge~v 477 (503)
T 2yhs_A 469 RYIGVGERI 477 (503)
T ss_dssp EEEECSSSG
T ss_pred EEEecCCCh
Confidence 666655443
No 273
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=24.14 E-value=1.5e+02 Score=19.36 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 000957 121 ISQDQEKTEALKNQMQELEKSIQD 144 (1209)
Q Consensus 121 i~~~~~~~~~l~~~~~~l~~~i~~ 144 (1209)
+.+++.+++.+..+...++.++..
T Consensus 2 MnQLEdKVEell~~~~~le~EV~R 25 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHH
Confidence 344555555555555555554443
No 274
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.13 E-value=1.5e+02 Score=26.99 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Q 000957 793 KAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLN 841 (1209)
Q Consensus 793 ~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~ 841 (1209)
.+...+..+...+..+..+...+..+..-.......+...++..+....
T Consensus 84 ~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKK 132 (146)
T 2xnx_M 84 NAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKK 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------------
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555666655555555555555555555444433
No 275
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=24.04 E-value=46 Score=36.30 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=30.1
Q ss_pred cCCCeEEEeCCCCCCCHH--------h----HHHHHHHHHHHHHhhccCCCcEEEEEecCHHHH
Q 000957 1126 LNCGILALDEPTTNLDGP--------N----AESLAAALHRIMEDRKGQENFQLIVITHDERFA 1177 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~--------~----~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~ 1177 (1209)
.+|+++|+|.+++.+.+. . ...+...|..+. ...|.+||+++|...-.
T Consensus 218 ~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la----~~~~~~Vi~~nq~~~~~ 277 (343)
T 1v5w_A 218 GIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKIS----EEYNVAVFVTNQMTADP 277 (343)
T ss_dssp SSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHH----HHHTCEEEEEECC----
T ss_pred CCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH----HHhCCEEEEEeeceecC
Confidence 578999999999877542 1 234444444443 33578999999976543
No 276
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.70 E-value=2.1e+02 Score=32.54 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=7.8
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 000957 743 LSTKDNLQNELEKLRDEQRY 762 (1209)
Q Consensus 743 ~~~~~~l~~e~~~l~~~~~~ 762 (1209)
..+.+.+..+.+.++.+++.
T Consensus 39 d~~~r~~~~~~~~l~~~rn~ 58 (485)
T 3qne_A 39 YKEWVKLRFDLDEHNKKLNS 58 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334333333
No 277
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=23.48 E-value=3.9e+02 Score=23.66 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHhh
Q 000957 904 ILVELDRFKDIVRNQ 918 (1209)
Q Consensus 904 l~~~i~~l~~~~~~~ 918 (1209)
+..+|......|.+.
T Consensus 87 Ld~~ik~qekiIdnF 101 (119)
T 3etw_A 87 LEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 278
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.26 E-value=8.2e+02 Score=27.39 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=18.9
Q ss_pred hhhhcCCHHhhhhheeeccCCCCCCCCCchhhHHhhHHhhhhhh---------------hHHHHHHHHHHHHHHHHHHHH
Q 000957 35 PALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATR---------------YTKALEVIKKLHKDQAQEIKT 99 (1209)
Q Consensus 35 ~~~lgvs~ail~~VifchQees~wpl~ep~~Lkk~fDdIf~a~k---------------y~kale~lk~~rke~~~~lK~ 99 (1209)
|.+=-|+++|= --.-.-.|...|+.+.|+..+|..... +=.++|.|-+........+..
T Consensus 31 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~c~~~~~~~G~~CPTtC~l~D~L~k~q~~V~~~Lqe 104 (464)
T 1m1j_B 31 PTLRPVAPPIS------GTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELGVLCPTGCELQTTLLKQEKTVKPVLRD 104 (464)
T ss_dssp --------------------------------------CCCCCSCEECSSTTTCEEEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcC------CCCcCCCCCCCcchhhccCcccCCCCCCccccCCCccCcCCCccHHHHHHHHhhhhhHhHHHH
Confidence 44444555553 223334566677766666666552211 112677776665555556666
Q ss_pred HHHHHHHHH
Q 000957 100 YKLKLENLQ 108 (1209)
Q Consensus 100 ~~~~l~~lk 108 (1209)
++..+..+.
T Consensus 105 Le~~l~~ls 113 (464)
T 1m1j_B 105 LKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 665555553
No 279
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=23.18 E-value=14 Score=22.35 Aligned_cols=9 Identities=44% Similarity=0.733 Sum_probs=7.0
Q ss_pred hhheeeccC
Q 000957 46 ENVIFVHQD 54 (1209)
Q Consensus 46 ~~VifchQe 54 (1209)
|=|-|||++
T Consensus 10 EC~yfChlD 18 (26)
T 2lde_A 10 ECMNFCHKD 18 (26)
T ss_dssp HHHHHHSTT
T ss_pred hhheeeccc
Confidence 457899996
No 280
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.14 E-value=51 Score=24.98 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=22.6
Q ss_pred ccCCCCchHHHHHHHHHHHHHhccHHHHHHhhHhh
Q 000957 591 CERPFSAEEEDEFVKKQRVKAASSAEHMKVLSLES 625 (1209)
Q Consensus 591 C~r~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 625 (1209)
.-||++..+++.|++.+...+..+......+...+
T Consensus 16 ~~rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~ 50 (57)
T 2wuj_A 16 SFRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKV 50 (57)
T ss_dssp ETTEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999888877744444434333333
No 281
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=23.08 E-value=3.9e+02 Score=23.56 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 000957 890 SESEVKSCKIRTD 902 (1209)
Q Consensus 890 ~~~~i~~~~~~i~ 902 (1209)
+..-+..++.+|.
T Consensus 80 Yk~~~~~Ld~eI~ 92 (119)
T 2avr_X 80 YEDALKKLEAEME 92 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 282
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.00 E-value=8.3e+02 Score=27.36 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=12.3
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHH
Q 000957 244 ITNLLSEAGAHMSRMNERDSTIQKLFA 270 (1209)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (1209)
+..+++.+..|+..+......+.++..
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444433
No 283
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=22.95 E-value=2.4 Score=42.86 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCCChhhhhhhhHHHHHHHH-HHhccCCCeEEEeCCC
Q 000957 1102 GRCSAGQKVLASLIIRLALA-ETFCLNCGILALDEPT 1137 (1209)
Q Consensus 1102 ~~lSgG~k~l~sl~ir~~la-~~~~~~~~~l~lDEp~ 1137 (1209)
..+|||+++ +++++ ++++.+++++++|||.
T Consensus 110 ~~~~~g~~~------~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 110 RDIAIAGAA------EVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TTEEEEEEE------EECTTCCEEEEEESSTTBCSTT
T ss_pred ccCCCCCce------EEcCCCcEEEECCceeccCCch
Confidence 468999999 77766 5666666677777774
No 284
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=22.70 E-value=7.9e+02 Score=26.99 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 730 RTMEEIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVK 783 (1209)
Q Consensus 730 ~~~~e~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~l~~~~~~ 783 (1209)
..+++...-...--.+-+.+++.+...+.++...+..++.++..++....+...
T Consensus 335 ~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~ 388 (602)
T 1cii_A 335 EDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKH 388 (602)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555544444334444555555555555555555555555555554444433
No 285
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=22.42 E-value=41 Score=34.01 Aligned_cols=42 Identities=10% Similarity=0.129 Sum_probs=26.3
Q ss_pred cCCCeEEEeCCCC-CCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEec
Q 000957 1126 LNCGILALDEPTT-NLDGPNAESLAAALHRIMEDRKGQENFQLIVITH 1172 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~-~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH 1172 (1209)
..|+++|+|||-. +.+......++..+..+ ...|+-+|.++|
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~-----l~sgidVitT~N 125 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQEL-----LAAGIDVYTTVN 125 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHH-----HHTTCEEEEEEE
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHH-----HcCCCCEEEEcc
Confidence 5799999999873 34433333334444433 235778888887
No 286
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=22.27 E-value=1.5e+02 Score=33.40 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=26.4
Q ss_pred HHHHHHHhccCCCeEEEeCCC-CC--CCHHhHHHHHHHHHH
Q 000957 1117 RLALAETFCLNCGILALDEPT-TN--LDGPNAESLAAALHR 1154 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~-~~--LD~~~~~~~~~~l~~ 1154 (1209)
+-+++.+...+|+++|+|.|. .+ .|+.-...+...+.-
T Consensus 169 ~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~ 209 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV 209 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh
Confidence 345666655789999999998 45 788666666654443
No 287
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.18 E-value=2.6e+02 Score=21.10 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=12.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 822 LSKEKEKLLSDYNDLKVKLNREYEEQAEQK 851 (1209)
Q Consensus 822 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 851 (1209)
+...+..+...+.............+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 32 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCSLKTDEFLKAK 32 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 288
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=22.01 E-value=20 Score=21.73 Aligned_cols=9 Identities=56% Similarity=0.763 Sum_probs=6.8
Q ss_pred hhheeeccC
Q 000957 46 ENVIFVHQD 54 (1209)
Q Consensus 46 ~~VifchQe 54 (1209)
|-|-|||++
T Consensus 10 EC~YfChld 18 (26)
T 1edn_A 10 ECVYFCHLD 18 (26)
T ss_dssp GSTTTSTTT
T ss_pred cEEEEEecc
Confidence 347899986
No 289
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=21.94 E-value=1.7e+02 Score=28.00 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=29.2
Q ss_pred CChhhhhhhhHHHHHHHHHHhccCCCeEEEeCCCCCCCHHhHHHHHHHHHHH
Q 000957 1104 CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALHRI 1155 (1209)
Q Consensus 1104 lSgG~k~l~sl~ir~~la~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~ 1155 (1209)
+---++. ++||.||+..+ .+-+++|+|.- .++......+..+|..+
T Consensus 69 lnkK~rr---lAl~sALs~k~-~~~~lvVvd~~--~~~~~KTK~~~~~l~~l 114 (175)
T 2ftc_D 69 LPMKVRA---LGLKVALTVKL-AQDDLHIMDSL--ELPTGDPQYLTELAHYR 114 (175)
T ss_pred cCHHHHH---HHHHHHHHHhc-cCCCEEEEecc--cCCCCCHHHHHHHHHHC
Confidence 4444444 44566776544 34588888875 45666777888877765
No 290
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.83 E-value=4.3e+02 Score=23.54 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=15.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000957 779 EEKVKAANTLRDVKKAEEELEHLMEEKGQLDLDEK 813 (1209)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~ 813 (1209)
..+...+..+..+..+...+.++...+..+..++.
T Consensus 51 sele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 51 SKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444443
No 291
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=21.73 E-value=2.3e+02 Score=20.37 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Q 000957 229 KIKFLEQNIDAYTAEITNLLSEAGAHMSRMNERDS 263 (1209)
Q Consensus 229 ~~~~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~ 263 (1209)
+...+...+..++....++.++...-+..+++|-.
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit 40 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLS 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 292
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=21.44 E-value=0.45 Score=53.31 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=28.9
Q ss_pred CCChhhhhhhhHHHHHHHHHHhccCCCe--EEEeCCCCCCCHH
Q 000957 1103 RCSAGQKVLASLIIRLALAETFCLNCGI--LALDEPTTNLDGP 1143 (1209)
Q Consensus 1103 ~lSgG~k~l~sl~ir~~la~~~~~~~~~--l~lDEp~~~LD~~ 1143 (1209)
.+||| + |+++++++..+|++ +|+|++|+.||..
T Consensus 283 ~~~~G--~------R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 283 PKIGG--G------RVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp ECSSS--S------EEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred ecCCC--C------EEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 45889 6 77899999999999 9999999999864
No 293
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.33 E-value=3.1e+02 Score=22.20 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000957 215 DISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEA 251 (1209)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~ 251 (1209)
++..++.++.-...-+..+...+.....++..+..++
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 294
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=21.22 E-value=1.3e+02 Score=27.43 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=28.6
Q ss_pred cCCCeEEEeCCCCCCCHHhHHHHHHHHHHHHHhhccCCCcEEEEEec
Q 000957 1126 LNCGILALDEPTTNLDGPNAESLAAALHRIMEDRKGQENFQLIVITH 1172 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH 1172 (1209)
.+.+++++||+. .|++.....|...|.+. ...++.+|++|.
T Consensus 74 a~~~~l~lDei~-~l~~~~q~~Ll~~l~~~-----~~~~~~iI~~tn 114 (143)
T 3co5_A 74 AEGGVLYVGDIA-QYSRNIQTGITFIIGKA-----ERCRVRVIASCS 114 (143)
T ss_dssp TTTSEEEEEECT-TCCHHHHHHHHHHHHHH-----TTTTCEEEEEEE
T ss_pred CCCCeEEEeChH-HCCHHHHHHHHHHHHhC-----CCCCEEEEEecC
Confidence 346899999987 56777777766665543 234567888776
No 295
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=20.97 E-value=94 Score=33.99 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=29.1
Q ss_pred cCCCeEEEeCCCCCCCHH-------------hHHHHHHHHHHHHHhhccCCCcEEEEEecCHH
Q 000957 1126 LNCGILALDEPTTNLDGP-------------NAESLAAALHRIMEDRKGQENFQLIVITHDER 1175 (1209)
Q Consensus 1126 ~~~~~l~lDEp~~~LD~~-------------~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~ 1175 (1209)
.+|+++|+|.+++-.-.. ..+.+...++.+... ....|++||+|+|-..
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~-a~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN-LKQSNTLLIFINQIRM 201 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHH-HHHHTCEEEEEEC---
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHH-HHHhCCEEEEEecccc
Confidence 679999999999877421 112334444444222 1235789999999543
No 296
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.72 E-value=1.6e+02 Score=33.02 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=36.9
Q ss_pred HHHHHHHhccCCCeEEEeCCCCC----------CCHHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1117 RLALAETFCLNCGILALDEPTTN----------LDGPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~----------LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
|-.|..|-...|.++++||.++- -|......+..+|.. +.......|.-||..|+.++.+.
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~-ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ-MDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHH-HHHSCSSCSEEEEEEESCSSSCC
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHH-hhCCCCCCCEEEEEecCChhhcC
Confidence 55555555577999999998632 233333444444444 34433445667788898776654
No 297
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=20.56 E-value=6.6 Score=44.40 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=24.9
Q ss_pred cCCccccccCCCChhhhhhhhHHHHHHHHHHhccCCCeEE
Q 000957 1093 TGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILA 1132 (1209)
Q Consensus 1093 ~~~~~~~~~~~lSgG~k~l~sl~ir~~la~~~~~~~~~l~ 1132 (1209)
++......++.||||++| | |+++||.+|++..
T Consensus 283 lgl~~~~~~~~LSgg~~Q------R--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 283 MGIEPFLISSSLLGVLAQ------R--LVRTLCPDCKEPY 314 (418)
T ss_dssp HTCCHHHHHHHEEEEEEE------E--EEEEECTTTCEEE
T ss_pred cCCcHHHHHHHHHHHHHH------H--hhhhhcCCCCccC
Confidence 344443455689999999 8 8899999999876
No 298
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=20.55 E-value=4.1e+02 Score=22.81 Aligned_cols=70 Identities=10% Similarity=0.007 Sum_probs=30.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 783 KAANTLRDVKKAEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKI 852 (1209)
Q Consensus 783 ~~~~~~~~~~~l~~~~~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 852 (1209)
.++..+...+.+...+......+..+...-..+-..-.........+...+..+................
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~ 106 (119)
T 3uun_A 37 VVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQS 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555544444444444333222222223334444444444444444444444433
No 299
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=20.41 E-value=3.5e+02 Score=22.67 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHhhhhhhccHHHH
Q 000957 935 KAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERDRLLSEVNRCQGTMSVY 989 (1209)
Q Consensus 935 ~~~l~~l~~ei~~l~~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~g~~~~l 989 (1209)
..+...+..++..+..++..... ..-=..+.+++..++.+..++..+.+.+..-
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSa-QDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISA-QDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888887 3333456666666666666655555544443
No 300
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.36 E-value=1.5e+02 Score=32.90 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=37.4
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCC----------HHhHHHHHHHHHHHHHhhccCCCcEEEEEecCHHHHH
Q 000957 1117 RLALAETFCLNCGILALDEPTTNLD----------GPNAESLAAALHRIMEDRKGQENFQLIVITHDERFAQ 1178 (1209)
Q Consensus 1117 r~~la~~~~~~~~~l~lDEp~~~LD----------~~~~~~~~~~l~~~~~~~~~~~~~~~i~itH~~~~~~ 1178 (1209)
|-.+..|-...|.++|+||.++-+- ......+..+|..+ +......+.-||..|..++.+.
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l-Dg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQL-DGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHH-HTTTCCCCEEEEEEESCSSSSC
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhh-hccCCCCCeEEEeccCChhhCC
Confidence 5555555557799999999997652 22233344444443 4333344667788898776654
No 301
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.21 E-value=6.5e+02 Score=28.65 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=12.3
Q ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000957 740 SGSLSTKDNLQNELEKLRDEQRYMENDL 767 (1209)
Q Consensus 740 ~~l~~~~~~l~~e~~~l~~~~~~~~~~l 767 (1209)
-++..+.+.+..+++.++.+++.+..++
T Consensus 73 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i 100 (501)
T 1wle_A 73 ISTWQELRQLREQIRSLEEEKEAVTEAV 100 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 302
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=20.10 E-value=1.1e+02 Score=31.04 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=29.2
Q ss_pred hccCCCeEEEeCCCC-CCCHHhHHHHHHHHHHHHHhhccCCCcEEEEE--ecCHHHH
Q 000957 1124 FCLNCGILALDEPTT-NLDGPNAESLAAALHRIMEDRKGQENFQLIVI--THDERFA 1177 (1209)
Q Consensus 1124 ~~~~~~~l~lDEp~~-~LD~~~~~~~~~~l~~~~~~~~~~~~~~~i~i--tH~~~~~ 1177 (1209)
.+.+++++|+||+.. ++|..... ..++.++.. ..+.++|+. |++...+
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~---~~l~~i~~~---~~~~~~il~SAT~~~~~~ 223 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLL---VVLRDVVQA---YPEVRIVLMSATIDTSMF 223 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHH---HHHHHHHHH---CTTSEEEEEECSSCCHHH
T ss_pred hhcCCcEEEEECCccCCcchHHHH---HHHHHHHhh---CCCCeEEEEecCCCHHHH
Confidence 468899999999987 57665443 334444322 135666664 5555443
No 303
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.04 E-value=7e+02 Score=27.77 Aligned_cols=109 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Q 000957 799 EHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNREYEEQAEQKINFQQEIEMLLKIASKIKEYYDLRKDE 878 (1209)
Q Consensus 799 ~~l~~~i~~~~~~i~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~~~ 878 (1209)
.-|-+.-...+..+.+++..+..+...-..+..-+..++......+........-.++....+.....-+++-.....+.
T Consensus 84 d~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~ 163 (461)
T 3ghg_B 84 EALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPT 163 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHH
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000957 879 RFKELQEKKSQSESEVKSCKIRTDEILVE 907 (1209)
Q Consensus 879 ~l~~~~~~l~~~~~~i~~~~~~i~~l~~~ 907 (1209)
.+..+...+..+...|..++..+..+...
T Consensus 164 ~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 164 NLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Done!