Query 000958
Match_columns 1208
No_of_seqs 302 out of 436
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 11:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14566 PTPlike_phytase: Inos 100.0 9.5E-42 2.1E-46 348.8 -1.1 145 88-243 1-149 (149)
2 PF14566 PTPlike_phytase: Inos 100.0 1.8E-40 3.9E-45 339.4 -0.6 146 506-662 1-149 (149)
3 PTZ00242 protein tyrosine phos 98.1 5.6E-06 1.2E-10 87.1 6.6 64 175-244 55-123 (166)
4 COG2453 CDC14 Predicted protei 98.0 7.4E-06 1.6E-10 87.2 5.9 58 187-244 73-131 (180)
5 PTZ00393 protein tyrosine phos 98.0 1.1E-05 2.3E-10 88.9 6.8 57 184-243 137-194 (241)
6 PTZ00242 protein tyrosine phos 98.0 1.1E-05 2.5E-10 84.8 6.6 62 594-660 55-121 (166)
7 KOG1720 Protein tyrosine phosp 97.9 1.6E-05 3.5E-10 85.1 6.1 60 183-245 114-173 (225)
8 PTZ00393 protein tyrosine phos 97.8 3.6E-05 7.8E-10 84.8 7.3 54 605-658 137-191 (241)
9 COG2453 CDC14 Predicted protei 97.8 4.7E-05 1E-09 81.0 6.8 59 604-662 71-130 (180)
10 PF05706 CDKN3: Cyclin-depende 97.7 0.00012 2.6E-09 76.7 7.8 70 587-663 87-157 (168)
11 PF05706 CDKN3: Cyclin-depende 97.6 5.7E-05 1.2E-09 79.1 5.2 96 133-244 61-157 (168)
12 KOG1720 Protein tyrosine phosp 97.5 0.00013 2.7E-09 78.5 5.4 58 604-663 114-171 (225)
13 smart00195 DSPc Dual specifici 97.5 0.00024 5.2E-09 71.5 7.1 58 605-662 44-103 (138)
14 smart00195 DSPc Dual specifici 97.5 0.00019 4.2E-09 72.2 6.2 58 184-243 44-103 (138)
15 PF00782 DSPc: Dual specificit 97.4 0.00015 3.2E-09 72.4 4.7 59 186-245 39-99 (133)
16 smart00404 PTPc_motif Protein 97.4 0.00023 5E-09 67.1 5.7 56 189-244 5-65 (105)
17 smart00012 PTPc_DSPc Protein t 97.4 0.00023 5E-09 67.1 5.7 56 189-244 5-65 (105)
18 PF00782 DSPc: Dual specificit 97.4 0.0002 4.2E-09 71.5 5.4 59 605-663 39-99 (133)
19 PLN02727 NAD kinase 97.3 0.00067 1.4E-08 86.1 9.8 55 187-244 311-366 (986)
20 smart00404 PTPc_motif Protein 97.3 0.00053 1.1E-08 64.6 6.7 58 607-664 4-66 (105)
21 smart00012 PTPc_DSPc Protein t 97.3 0.00053 1.1E-08 64.6 6.7 58 607-664 4-66 (105)
22 KOG1719 Dual specificity phosp 97.2 0.00047 1E-08 70.9 5.8 66 176-247 70-137 (183)
23 cd00127 DSPc Dual specificity 97.2 0.00044 9.4E-09 69.3 5.6 58 184-243 47-106 (139)
24 cd00127 DSPc Dual specificity 97.1 0.00097 2.1E-08 66.8 6.3 58 605-662 47-106 (139)
25 TIGR01244 conserved hypothetic 97.0 0.0015 3.3E-08 66.5 6.9 50 184-239 57-106 (135)
26 PRK12361 hypothetical protein; 96.9 0.0012 2.6E-08 81.7 5.8 57 187-244 143-200 (547)
27 TIGR01244 conserved hypothetic 96.8 0.0033 7.1E-08 64.1 7.2 50 605-658 57-106 (135)
28 PRK12361 hypothetical protein; 96.8 0.0021 4.5E-08 79.6 6.9 58 605-662 142-200 (547)
29 PF03162 Y_phosphatase2: Tyros 96.5 0.0089 1.9E-07 63.1 8.1 40 46-95 5-44 (164)
30 PF04273 DUF442: Putative phos 96.4 0.0092 2E-07 59.1 7.5 61 170-239 46-106 (110)
31 PHA02740 protein tyrosine phos 96.4 0.015 3.1E-07 67.1 10.3 57 605-663 180-247 (298)
32 PF04273 DUF442: Putative phos 96.3 0.0078 1.7E-07 59.6 5.9 60 590-658 47-106 (110)
33 COG5599 PTP2 Protein tyrosine 96.1 0.0036 7.8E-08 69.6 2.9 48 194-244 193-244 (302)
34 COG5350 Predicted protein tyro 96.1 0.0069 1.5E-07 62.5 4.6 47 198-244 73-119 (172)
35 KOG1719 Dual specificity phosp 96.0 0.012 2.6E-07 61.0 5.9 58 604-661 74-133 (183)
36 smart00194 PTPc Protein tyrosi 95.8 0.0091 2E-07 66.7 4.8 54 189-244 163-219 (258)
37 PHA02742 protein tyrosine phos 95.8 0.057 1.2E-06 62.4 11.3 56 608-663 186-255 (303)
38 COG5599 PTP2 Protein tyrosine 95.7 0.0074 1.6E-07 67.2 3.4 53 607-662 187-243 (302)
39 smart00194 PTPc Protein tyrosi 95.7 0.015 3.3E-07 64.9 6.0 57 605-663 160-219 (258)
40 PLN02727 NAD kinase 95.7 0.02 4.2E-07 73.3 7.3 63 593-661 303-365 (986)
41 KOG0791 Protein tyrosine phosp 95.6 0.021 4.4E-07 66.4 6.5 59 187-245 253-314 (374)
42 cd00047 PTPc Protein tyrosine 95.4 0.024 5.2E-07 62.1 6.1 58 187-244 130-192 (231)
43 COG5350 Predicted protein tyro 95.2 0.03 6.5E-07 58.0 5.5 58 605-662 59-118 (172)
44 KOG0792 Protein tyrosine phosp 95.1 0.012 2.5E-07 75.4 2.7 47 194-242 1036-1087(1144)
45 KOG0791 Protein tyrosine phosp 95.1 0.037 8.1E-07 64.3 6.3 59 605-663 252-313 (374)
46 KOG1716 Dual specificity phosp 95.0 0.028 6E-07 64.3 5.2 58 187-245 122-181 (285)
47 PHA02742 protein tyrosine phos 95.0 0.033 7.2E-07 64.3 5.7 51 194-244 191-255 (303)
48 cd00047 PTPc Protein tyrosine 94.9 0.057 1.2E-06 59.3 7.1 51 613-663 138-192 (231)
49 PHA02740 protein tyrosine phos 94.9 0.032 7E-07 64.3 5.3 48 195-244 187-247 (298)
50 PRK15375 pathogenicity island 94.8 0.032 7E-07 67.5 5.0 52 189-240 425-488 (535)
51 PF13350 Y_phosphatase3: Tyros 94.7 0.067 1.4E-06 56.0 6.5 74 588-661 48-148 (164)
52 PHA02738 hypothetical protein; 94.6 0.16 3.5E-06 59.2 9.9 56 608-663 182-253 (320)
53 PF13350 Y_phosphatase3: Tyros 94.5 0.063 1.4E-06 56.2 5.8 69 169-243 48-147 (164)
54 PRK15375 pathogenicity island 93.9 0.072 1.6E-06 64.6 5.4 50 611-660 429-489 (535)
55 KOG0790 Protein tyrosine phosp 93.8 0.043 9.3E-07 64.7 3.1 56 189-244 417-477 (600)
56 PHA02746 protein tyrosine phos 93.8 0.11 2.4E-06 60.6 6.6 57 605-663 204-273 (323)
57 PHA02747 protein tyrosine phos 93.8 0.079 1.7E-06 61.5 5.3 51 194-244 192-255 (312)
58 KOG1716 Dual specificity phosp 93.7 0.1 2.2E-06 59.8 6.0 58 605-662 121-180 (285)
59 KOG0790 Protein tyrosine phosp 93.7 0.047 1E-06 64.4 3.3 59 606-664 415-478 (600)
60 KOG1717 Dual specificity phosp 93.7 0.096 2.1E-06 58.5 5.4 63 604-666 216-280 (343)
61 PHA02747 protein tyrosine phos 93.6 0.12 2.6E-06 60.1 6.4 56 608-663 187-255 (312)
62 PHA02738 hypothetical protein; 93.4 0.11 2.3E-06 60.7 5.4 53 192-244 185-253 (320)
63 PHA02746 protein tyrosine phos 93.3 0.12 2.5E-06 60.4 5.6 50 195-244 211-273 (323)
64 KOG0792 Protein tyrosine phosp 93.2 0.095 2.1E-06 67.5 5.0 53 611-663 1034-1089(1144)
65 KOG1717 Dual specificity phosp 92.9 0.12 2.5E-06 57.9 4.5 56 187-242 218-275 (343)
66 PF00102 Y_phosphatase: Protei 92.0 0.21 4.6E-06 54.0 5.2 58 605-664 137-197 (235)
67 KOG1718 Dual specificity phosp 91.2 0.29 6.2E-06 51.8 4.9 60 187-247 61-122 (198)
68 PF00102 Y_phosphatase: Protei 90.8 0.31 6.7E-06 52.8 4.9 53 193-245 142-197 (235)
69 KOG2283 Clathrin coat dissocia 90.7 0.14 3E-06 61.9 2.3 56 189-245 75-133 (434)
70 KOG4228 Protein tyrosine phosp 90.6 0.18 3.9E-06 65.6 3.3 60 607-666 697-759 (1087)
71 KOG4228 Protein tyrosine phosp 90.5 0.17 3.7E-06 65.9 2.9 51 194-244 703-756 (1087)
72 PF03162 Y_phosphatase2: Tyros 89.4 0.45 9.7E-06 50.4 4.6 54 605-659 56-113 (164)
73 KOG2836 Protein tyrosine phosp 87.2 2.7 5.9E-05 43.1 8.2 55 183-239 61-118 (173)
74 KOG1718 Dual specificity phosp 85.6 1.4 2.9E-05 46.9 5.3 58 605-663 60-119 (198)
75 KOG0789 Protein tyrosine phosp 84.3 1.7 3.7E-05 51.8 6.2 54 188-243 266-324 (415)
76 KOG2283 Clathrin coat dissocia 84.2 0.63 1.4E-05 56.4 2.5 55 607-662 74-131 (434)
77 KOG0789 Protein tyrosine phosp 83.1 2.5 5.4E-05 50.4 6.9 58 606-663 265-325 (415)
78 KOG2836 Protein tyrosine phosp 82.6 5.9 0.00013 40.8 8.1 54 605-658 62-118 (173)
79 COG3453 Uncharacterized protei 80.3 9.4 0.0002 38.8 8.5 81 145-243 28-108 (130)
80 COG3453 Uncharacterized protei 71.1 12 0.00025 38.1 6.4 61 590-662 48-108 (130)
81 KOG1572 Predicted protein tyro 64.3 18 0.00038 40.8 6.8 58 186-245 109-175 (249)
82 KOG0793 Protein tyrosine phosp 56.4 18 0.00039 45.8 5.7 56 608-666 895-955 (1004)
83 KOG1530 Rhodanese-related sulf 55.6 19 0.0004 37.2 4.7 64 587-656 42-107 (136)
84 COG2365 Protein tyrosine/serin 50.6 16 0.00034 41.4 3.8 42 200-244 119-160 (249)
85 KOG2386 mRNA capping enzyme, g 47.8 11 0.00024 45.3 2.1 58 184-244 86-149 (393)
86 KOG1530 Rhodanese-related sulf 45.9 31 0.00067 35.6 4.6 60 169-237 43-107 (136)
87 KOG0793 Protein tyrosine phosp 45.7 16 0.00035 46.2 3.1 54 189-245 895-953 (1004)
88 PRK00915 2-isopropylmalate syn 45.2 2.6E+02 0.0056 35.2 13.5 98 117-232 110-210 (513)
89 cd03174 DRE_TIM_metallolyase D 44.7 1.3E+02 0.0028 33.5 10.0 83 136-230 120-202 (265)
90 TIGR00973 leuA_bact 2-isopropy 39.9 3E+02 0.0064 34.5 12.8 98 117-232 107-207 (494)
91 cd01518 RHOD_YceA Member of th 37.8 54 0.0012 31.1 4.8 20 634-654 58-77 (101)
92 cd01523 RHOD_Lact_B Member of 37.4 73 0.0016 30.1 5.6 22 211-233 54-75 (100)
93 COG2365 Protein tyrosine/serin 34.6 43 0.00094 37.9 4.1 26 637-662 136-161 (249)
94 cd07945 DRE_TIM_CMS Leptospira 34.3 1.7E+02 0.0037 33.8 8.9 110 534-664 103-213 (280)
95 cd07938 DRE_TIM_HMGL 3-hydroxy 33.9 3.5E+02 0.0076 31.1 11.3 103 116-230 103-205 (274)
96 KOG1572 Predicted protein tyro 33.7 87 0.0019 35.5 6.1 55 605-661 109-170 (249)
97 PLN02746 hydroxymethylglutaryl 33.7 2E+02 0.0043 34.5 9.5 105 113-229 148-252 (347)
98 PRK05692 hydroxymethylglutaryl 33.3 3.5E+02 0.0075 31.4 11.2 106 114-232 107-213 (287)
99 cd07940 DRE_TIM_IPMS 2-isoprop 31.9 7.2E+02 0.016 28.2 13.4 139 471-649 59-201 (268)
100 cd07945 DRE_TIM_CMS Leptospira 30.7 2.7E+02 0.0058 32.3 9.7 116 113-248 101-216 (280)
101 PF11521 TFIIE-A_C-term: C-ter 28.8 30 0.00065 33.3 1.4 35 902-946 39-73 (86)
102 cd07940 DRE_TIM_IPMS 2-isoprop 27.6 9.5E+02 0.021 27.3 13.5 100 113-230 100-201 (268)
103 cd03174 DRE_TIM_metallolyase D 27.5 2.6E+02 0.0056 31.2 8.8 97 535-649 104-202 (265)
104 cd07939 DRE_TIM_NifV Streptomy 26.4 3.6E+02 0.0079 30.5 9.8 101 116-234 99-200 (259)
105 PRK00915 2-isopropylmalate syn 26.3 9.4E+02 0.02 30.3 14.1 141 472-651 66-210 (513)
106 PRK08903 DnaA regulatory inact 26.1 65 0.0014 35.3 3.6 28 216-243 40-67 (227)
107 COG4981 Enoyl reductase domain 25.6 3.3E+02 0.0071 34.5 9.4 142 54-246 62-212 (717)
108 TIGR03815 CpaE_hom_Actino heli 25.3 1.1E+02 0.0024 35.6 5.4 63 175-244 55-120 (322)
109 cd01518 RHOD_YceA Member of th 25.0 87 0.0019 29.7 3.8 20 215-235 58-77 (101)
110 cd07948 DRE_TIM_HCS Saccharomy 24.6 2.4E+02 0.0053 32.3 7.9 98 113-229 98-195 (262)
111 PF01656 CbiA: CobQ/CobB/MinD/ 24.0 73 0.0016 33.3 3.4 24 221-244 2-25 (195)
112 cd07947 DRE_TIM_Re_CS Clostrid 24.0 4E+02 0.0087 30.9 9.6 110 113-234 101-221 (279)
113 PRK07414 cob(I)yrinic acid a,c 22.7 76 0.0016 34.5 3.2 26 217-244 20-45 (178)
114 PRK11032 hypothetical protein; 22.6 2.8E+02 0.006 29.8 7.2 42 433-475 114-160 (160)
115 PRK05692 hydroxymethylglutaryl 22.5 5E+02 0.011 30.1 10.0 103 534-650 108-212 (287)
116 PLN02321 2-isopropylmalate syn 22.2 9E+02 0.02 31.5 12.9 100 113-230 196-299 (632)
117 TIGR00973 leuA_bact 2-isopropy 21.6 1.2E+03 0.025 29.5 13.5 141 472-651 63-207 (494)
118 cd07938 DRE_TIM_HMGL 3-hydroxy 21.1 6E+02 0.013 29.2 10.3 45 604-649 161-205 (274)
119 PF04212 MIT: MIT (microtubule 20.7 3.4E+02 0.0074 24.3 6.6 47 303-350 8-61 (69)
120 PLN02746 hydroxymethylglutaryl 20.4 4.2E+02 0.0091 31.8 9.0 102 534-648 150-252 (347)
No 1
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=100.00 E-value=9.5e-42 Score=348.76 Aligned_cols=145 Identities=45% Similarity=0.767 Sum_probs=119.2
Q ss_pred EEcCCCceEEECCeeeEeecCCCCCCcc-ccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCC---Ccccce
Q 000958 88 ISLREEPVVYINGRPFVLRDVGRPFSNL-EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQ---MVDQWE 163 (1208)
Q Consensus 88 vdLREEph~yiNG~p~s~r~~~~~~~N~-~~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~---~~~~~~ 163 (1208)
|||||||||||||.|||||+..++.+|+ .+.|++++++|++|.+||+||+.+++++++.+++|++..++. +.+.|+
T Consensus 1 vdLReE~h~~ing~p~s~r~~~~~~~~~~~~~g~~~~~~e~~E~~Lk~di~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~ 80 (149)
T PF14566_consen 1 VDLREEPHGYINGRPYSWREPDNPANNIKSYPGISADEVEQLEERLKEDILKEAKRFGGRILVHDEDEDGVVSTVIEVWE 80 (149)
T ss_dssp EEEE-S-EEEETTEEEEEECGGGTTTTTHHHHHHHHHHHHHHHTHCCCCCEEEEECEECCCTCCCCEECEEEEE-S-E--
T ss_pred CcCCcCCEEEECCcEeeecccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccchhhhH
Confidence 7999999999999999999998777776 678999999999999999999999999999999999887773 333333
Q ss_pred eecCCcccChHHHHHHhhhcCcceeEEEeecCCCCCCCcccHHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000958 164 PVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1208)
Q Consensus 164 ~v~~~~V~T~~Ev~~~~~~~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~ 243 (1208)
.+|++++++.. |+ .|+|||||||++|++++||+||++++++|+++|||||||+|+||||||||||+|||
T Consensus 81 ------~~~e~~~~~~~---g~--~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 81 ------EVTEEELVEGN---GL--RYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp -------E-HHHHHHHT---T---EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcC---Cc--eEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888865 44 49999999999999999999999999999999999999999999999999999996
No 2
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=100.00 E-value=1.8e-40 Score=339.39 Aligned_cols=146 Identities=45% Similarity=0.764 Sum_probs=121.6
Q ss_pred EEccccceEEECCeeeeeccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeecCCC---ccccccc
Q 000958 506 HNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDG---QIFDAWE 582 (1208)
Q Consensus 506 vdLREEpv~yiNG~p~slR~~~~~~~N~~~n~Gis~~~VE~~E~~Lk~dil~e~~~~~g~ill~~e~~~~---~~~~~we 582 (1208)
|||||||||||||.|||||+++++..|+..+.|++++++|++|.+||+||+.+++..+|.+++|++...+ .+.++|+
T Consensus 1 vdLReE~h~~ing~p~s~r~~~~~~~~~~~~~g~~~~~~e~~E~~Lk~di~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~ 80 (149)
T PF14566_consen 1 VDLREEPHGYINGRPYSWREPDNPANNIKSYPGISADEVEQLEERLKEDILKEAKRFGGRILVHDEDEDGVVSTVIEVWE 80 (149)
T ss_dssp EEEE-S-EEEETTEEEEEECGGGTTTTTHHHHHHHHHHHHHHHTHCCCCCEEEEECEECCCTCCCCEECEEEEE-S-E--
T ss_pred CcCCcCCEEEECCcEeeecccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccchhhhH
Confidence 7999999999999999999999998887788899999999999999999999999999999999887776 4556664
Q ss_pred ccccCcccChHHHhhcccCCCCCeeEEEeecCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 583 HVSSESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 583 ~v~~~~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
.+|++++++.. |++|+|||+||++||.+++||+|+++++++|+++|||||||+|+|||||||||++|++
T Consensus 81 ------~~~e~~~~~~~-----g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 81 ------EVTEEELVEGN-----GLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp -------E-HHHHHHHT-----T-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcC-----CceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 67888888876 9999999999999999999999999999999999999999999999999999999985
No 3
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=98.07 E-value=5.6e-06 Score=87.08 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=52.2
Q ss_pred HHHHHhhhcCcceeEEEeecCCCCCCCcccHHHHHHHhhcC-----CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 175 DVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 175 Ev~~~~~~~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~l-----p~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
+.++.. |+. |+++|++|+..|+.++++.|++++.+. .++..+++||.+|.|||.|+++++ ||+.
T Consensus 55 ~~~~~~---gi~--~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~y-L~~~ 123 (166)
T PTZ00242 55 ELLEKN---GIE--VHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALA-LVEY 123 (166)
T ss_pred HHHHHC---CCE--EEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHH-HHHh
Confidence 444544 666 999999999999999999999999763 458899999999999999866655 5554
No 4
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.00 E-value=7.4e-06 Score=87.16 Aligned_cols=58 Identities=28% Similarity=0.465 Sum_probs=51.7
Q ss_pred eeEEEeecCCCCCCCcccHHHHHHHhhcCC-CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 187 VDYERVPVTDEKSPKEQDFDILVDKISQTD-LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 187 l~Y~RiPItD~~~P~~~~~D~fi~~v~~lp-~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
+.+..+|+.|+..|+.+++|.+++++.+.- ++..+++||++|.|||-|-++++.|.+.
T Consensus 73 ~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~ 131 (180)
T COG2453 73 IQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYG 131 (180)
T ss_pred ceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHc
Confidence 349999999999999999999999999874 5569999999999999998887777774
No 5
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.99 E-value=1.1e-05 Score=88.95 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=48.4
Q ss_pred CcceeEEEeecCCCCCCCcccHHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000958 184 GYLVDYERVPVTDEKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1208)
Q Consensus 184 G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~l-p~~t~L~FhCqaG~GRTTt~Mvi~~Li~ 243 (1208)
|+. |+++|++|+.+|.++.+++|++++.+. ..+..+.+||.+|.|||.| |+++.||.
T Consensus 137 GI~--~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGt-l~AayLI~ 194 (241)
T PTZ00393 137 GIN--VHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPV-LASIVLIE 194 (241)
T ss_pred CCe--EEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 666 999999999999999999999999764 3567899999999999976 44555654
No 6
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=97.97 E-value=1.1e-05 Score=84.79 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=53.3
Q ss_pred HHhhcccCCCCCeeEEEeecCCCCCCChhhHHHHHHHHHhc-----CCCCeEEEecCCCCCchhHHHHHHHH
Q 000958 594 EVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASA-----SKDTAFVFNCQMGRGRTTTGTVIACL 660 (1208)
Q Consensus 594 Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~-----~~~~~l~FhCq~G~GRTTt~Mv~~~L 660 (1208)
+.++.. |+.|+++|++|+..|..+++++|++++.+. .++..+++||.+|.|||.|+++++.|
T Consensus 55 ~~~~~~-----gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~ 121 (166)
T PTZ00242 55 ELLEKN-----GIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALV 121 (166)
T ss_pred HHHHHC-----CCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455544 899999999999999999999999998763 35889999999999999999888743
No 7
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=97.90 E-value=1.6e-05 Score=85.12 Aligned_cols=60 Identities=20% Similarity=0.369 Sum_probs=51.6
Q ss_pred cCcceeEEEeecCCCCCCCcccHHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000958 183 EGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1208)
Q Consensus 183 ~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~ 245 (1208)
.|+. -+++|+.|.+.|+++.++.||+++.+.-+...+-+||.+|.|||.| |+.|.||+.+
T Consensus 114 ~Gi~--h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~-liAc~lmy~~ 173 (225)
T KOG1720|consen 114 AGID--HHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGT-LIACYLMYEY 173 (225)
T ss_pred cCce--eeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhH-HHHHHHHHHh
Confidence 3665 8999999999999999999999999998899999999999999965 5555555553
No 8
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.82 E-value=3.6e-05 Score=84.83 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=47.5
Q ss_pred CeeEEEeecCCCCCCChhhHHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHH
Q 000958 605 PIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIA 658 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~ 658 (1208)
|+.|+++|++|+.+|..+++++|++++.... .+..+.+||.+|.|||-|..+.+
T Consensus 137 GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aay 191 (241)
T PTZ00393 137 GINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIV 191 (241)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999999999997654 67789999999999997654443
No 9
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.75 E-value=4.7e-05 Score=81.03 Aligned_cols=59 Identities=32% Similarity=0.414 Sum_probs=54.7
Q ss_pred CCeeEEEeecCCCCCCChhhHHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 604 FPIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 604 ~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
.++.+..+|+.|+..|+.+++++++.++.++. .+.-+++||++|.|||.|-++-+.|..
T Consensus 71 ~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~ 130 (180)
T COG2453 71 DGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY 130 (180)
T ss_pred CCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 38899999999999999999999999999987 556999999999999999999999886
No 10
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.66 E-value=0.00012 Score=76.74 Aligned_cols=70 Identities=30% Similarity=0.415 Sum_probs=44.6
Q ss_pred CcccChHHHhhcccCCCCCeeEEEeecCCCCCCChhhHHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 587 ESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 587 ~~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
-.|-+..+.+++. |+.++++||+|..+|..+..-+++..+.... .+.-+++||..|.||| +||.++|+..
T Consensus 87 l~Vp~L~~~~~~~-----Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRt--GlvAAcLLl~ 157 (168)
T PF05706_consen 87 LGVPDLGEAAQAR-----GIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRT--GLVAACLLLE 157 (168)
T ss_dssp TT-TTHHHHHHHT-----T-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHH--HHHHHHHHHH
T ss_pred cCCccHHHHHHHc-----CCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHH--HHHHHHHHHH
Confidence 3456777888887 9999999999999998776666666665554 7789999999999998 5566777653
No 11
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.64 E-value=5.7e-05 Score=79.07 Aligned_cols=96 Identities=22% Similarity=0.373 Sum_probs=49.5
Q ss_pred hHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEeecCCCCCCCcccHHHHHHHh
Q 000958 133 KEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKI 212 (1208)
Q Consensus 133 k~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v 212 (1208)
.+| |++++.+|....|. -.++++. ..-.|-+.-+.+++. |+. ++++||.|..+|+.+..-.++.-+
T Consensus 61 ~~D-L~~Lk~~G~~~Vvt-l~~~~EL-------~~l~Vp~L~~~~~~~---Gi~--~~h~PI~D~~aPd~~~~~~i~~eL 126 (168)
T PF05706_consen 61 QAD-LERLKDWGAQDVVT-LLTDHEL-------ARLGVPDLGEAAQAR---GIA--WHHLPIPDGSAPDFAAAWQILEEL 126 (168)
T ss_dssp HHH-HHHHHHTT--EEEE--S-HHHH-------HHTT-TTHHHHHHHT---T-E--EEE----TTS---HHHHHHHHHHH
T ss_pred HHH-HHHHHHCCCCEEEE-eCcHHHH-------HHcCCccHHHHHHHc---CCE--EEecCccCCCCCCHHHHHHHHHHH
Confidence 344 45566666655443 2222221 122355677888876 665 999999999999755444444333
Q ss_pred hc-CCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 213 SQ-TDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 213 ~~-lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
.. +..+.-+++||..|.||| +||+|+|+..
T Consensus 127 ~~~L~~g~~V~vHC~GGlGRt--GlvAAcLLl~ 157 (168)
T PF05706_consen 127 AARLENGRKVLVHCRGGLGRT--GLVAACLLLE 157 (168)
T ss_dssp HHHHHTT--EEEE-SSSSSHH--HHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCCCHH--HHHHHHHHHH
Confidence 32 236789999999999999 6777777654
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=97.49 E-value=0.00013 Score=78.48 Aligned_cols=58 Identities=28% Similarity=0.433 Sum_probs=51.5
Q ss_pred CCeeEEEeecCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 604 FPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 604 ~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
.|+.-+++|++|.+.|+++.+++|++.+-.+.++..+-+||.+|.|||-| +++|.+..
T Consensus 114 ~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~--liAc~lmy 171 (225)
T KOG1720|consen 114 AGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGT--LIACYLMY 171 (225)
T ss_pred cCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhH--HHHHHHHH
Confidence 39999999999999999999999999999998899999999999999855 55555543
No 13
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.48 E-value=0.00024 Score=71.52 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=50.2
Q ss_pred CeeEEEeecCC-CCCCChhhHHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 605 PIKYARVPITD-GKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 605 gl~Y~RIPitD-~~aP~~ed~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
++.|.++|+.| ...|..+.+++.++++...- .+..+.+||.+|.|||.+.++.|.|..
T Consensus 44 ~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 44 GFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred CCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 88999999999 46777888888888887765 677899999999999999999887764
No 14
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.47 E-value=0.00019 Score=72.23 Aligned_cols=58 Identities=26% Similarity=0.466 Sum_probs=46.3
Q ss_pred CcceeEEEeecCCC-CCCCcccHHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000958 184 GYLVDYERVPVTDE-KSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1208)
Q Consensus 184 G~~l~Y~RiPItD~-~~P~~~~~D~fi~~v~~l-p~~t~L~FhCqaG~GRTTt~Mvi~~Li~ 243 (1208)
|+. |+++|+.|+ ..|..+.++..++|+... ..+..+.+||.+|.|||.+.++++.|..
T Consensus 44 ~~~--~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 44 GFT--YLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred CCE--EEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 555 999999994 556678888888888775 3567899999999999998776665544
No 15
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=97.43 E-value=0.00015 Score=72.43 Aligned_cols=59 Identities=25% Similarity=0.439 Sum_probs=49.0
Q ss_pred ceeEEEeecCC-CCCCCcccHHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000958 186 LVDYERVPVTD-EKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1208)
Q Consensus 186 ~l~Y~RiPItD-~~~P~~~~~D~fi~~v~~l-p~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~ 245 (1208)
.+.|+++|+.| ...|..+.++.+++|+.+. .++..+.+||++|.|||.+.++ +.||+..
T Consensus 39 ~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~-ayLm~~~ 99 (133)
T PF00782_consen 39 GIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAA-AYLMKKN 99 (133)
T ss_dssp TSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHH-HHHHHHH
T ss_pred CCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHH-HHHHHHc
Confidence 34599999999 7888899999999999985 3678999999999999998555 5455543
No 16
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.41 E-value=0.00023 Score=67.09 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=43.3
Q ss_pred EEEeecCCCCCCCc-ccHHHHHHHhhcCC----CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 189 YERVPVTDEKSPKE-QDFDILVDKISQTD----LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 189 Y~RiPItD~~~P~~-~~~D~fi~~v~~lp----~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
|+-...+|+..|+. ++|-.|++.+++.. .+.++++||.+|.|||.++++++.++..
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~ 65 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQ 65 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHH
Confidence 55666778888987 67777777666543 3679999999999999998877777665
No 17
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.41 E-value=0.00023 Score=67.09 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=43.3
Q ss_pred EEEeecCCCCCCCc-ccHHHHHHHhhcCC----CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 189 YERVPVTDEKSPKE-QDFDILVDKISQTD----LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 189 Y~RiPItD~~~P~~-~~~D~fi~~v~~lp----~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
|+-...+|+..|+. ++|-.|++.+++.. .+.++++||.+|.|||.++++++.++..
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~ 65 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQ 65 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHH
Confidence 55666778888987 67777777666543 3679999999999999998877777665
No 18
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=97.41 E-value=0.0002 Score=71.53 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=53.1
Q ss_pred CeeEEEeecCC-CCCCChhhHHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 605 PIKYARVPITD-GKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 605 gl~Y~RIPitD-~~aP~~ed~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
++.|.++|+.| ...|..+.++.+.+++..+. ++..+.+||++|.|||.+.++.|.|...
T Consensus 39 ~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~ 99 (133)
T PF00782_consen 39 GIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKN 99 (133)
T ss_dssp TSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHc
Confidence 88999999999 89999999999999998866 7889999999999999998888777643
No 19
>PLN02727 NAD kinase
Probab=97.33 E-value=0.00067 Score=86.05 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=45.8
Q ss_pred eeEEEeecCCCCCCCcccHHHHHHHhhc-CCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 187 VDYERVPVTDEKSPKEQDFDILVDKISQ-TDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 187 l~Y~RiPItD~~~P~~~~~D~fi~~v~~-lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
|.|+.||+++-.+|+++++++|.+++++ + +..+.+||+.|.+||.+ |+.+.++.-
T Consensus 311 L~yVhIPVs~~~apt~EqVe~fa~~l~~sl--pkPVLvHCKSGarRAGa-mvA~yl~~~ 366 (986)
T PLN02727 311 IEVVKIPVEVRTAPSAEQVEKFASLVSDSS--KKPIYLHSKEGVWRTSA-MVSRWKQYM 366 (986)
T ss_pred CeEEEeecCCCCCCCHHHHHHHHHHHHhhc--CCCEEEECCCCCchHHH-HHHHHHHHH
Confidence 3499999999999999999999999944 5 56799999999999998 555555443
No 20
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.30 E-value=0.00053 Score=64.64 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=46.4
Q ss_pred eEEEeecCCCCCCCh-hhHHHHHHHHHhcC----CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000958 607 KYARVPITDGKAPKT-SDFDMLAVNIASAS----KDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1208)
Q Consensus 607 ~Y~RIPitD~~aP~~-ed~D~fi~~vr~~~----~~~~l~FhCq~G~GRTTt~Mv~~~Li~~~ 664 (1208)
.|+-.+.||...|.. +++-.|+..+++.. .+.++++||.+|.|||.++++++.++...
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 456667778899987 68888888776653 36799999999999999998888777643
No 21
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.30 E-value=0.00053 Score=64.64 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=46.4
Q ss_pred eEEEeecCCCCCCCh-hhHHHHHHHHHhcC----CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000958 607 KYARVPITDGKAPKT-SDFDMLAVNIASAS----KDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1208)
Q Consensus 607 ~Y~RIPitD~~aP~~-ed~D~fi~~vr~~~----~~~~l~FhCq~G~GRTTt~Mv~~~Li~~~ 664 (1208)
.|+-.+.||...|.. +++-.|+..+++.. .+.++++||.+|.|||.++++++.++...
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 456667778899987 68888888776653 36799999999999999998888777643
No 22
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.23 E-value=0.00047 Score=70.93 Aligned_cols=66 Identities=21% Similarity=0.421 Sum_probs=54.8
Q ss_pred HHHHhhhcCcceeEEEeecCCC-CCCCcccHHHHHHHhhc-CCCCCeEEEEcCCCCCchHHHHHHHHHHHHhhh
Q 000958 176 VYEELQVEGYLVDYERVPVTDE-KSPKEQDFDILVDKISQ-TDLNTEVIFNCQMGRGRTTTGMVIATLVYLNRI 247 (1208)
Q Consensus 176 v~~~~~~~G~~l~Y~RiPItD~-~~P~~~~~D~fi~~v~~-lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~~~ 247 (1208)
.|++. .|+..+||.+|. .+|.-++|-.=++||.. ++.+...-+||.||+||++| ||+|.||+.+.+
T Consensus 70 ~wk~~-----giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaT-vV~cYLmq~~~w 137 (183)
T KOG1719|consen 70 LWKNY-----GIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSAT-VVACYLMQHKNW 137 (183)
T ss_pred HHHhc-----cceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchh-hhhhhhhhhcCC
Confidence 66655 455999999997 57899999999999854 56788999999999999998 888888887654
No 23
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=97.23 E-value=0.00044 Score=69.26 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=44.6
Q ss_pred CcceeEEEeecCCCC-CCCcccHHHHHHHhhcCC-CCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000958 184 GYLVDYERVPVTDEK-SPKEQDFDILVDKISQTD-LNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1208)
Q Consensus 184 G~~l~Y~RiPItD~~-~P~~~~~D~fi~~v~~lp-~~t~L~FhCqaG~GRTTt~Mvi~~Li~ 243 (1208)
|+. |.++|+.|.. .+....++.+++++...- .+..+.+||.+|.|||.++++++.|..
T Consensus 47 ~~~--~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 106 (139)
T cd00127 47 DFN--YLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKT 106 (139)
T ss_pred Cce--EEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHH
Confidence 555 9999999987 344567888888887642 457899999999999998766554443
No 24
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=97.08 E-value=0.00097 Score=66.78 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=47.3
Q ss_pred CeeEEEeecCCCC-CCChhhHHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 605 PIKYARVPITDGK-APKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 605 gl~Y~RIPitD~~-aP~~ed~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
++.|..+|+.|.. .+....++.+++++...- .+..+.+||..|.|||.++++.+.|..
T Consensus 47 ~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 106 (139)
T cd00127 47 DFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKT 106 (139)
T ss_pred CceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHH
Confidence 8899999999987 445567888888887654 567899999999999999988776653
No 25
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.99 E-value=0.0015 Score=66.47 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=41.4
Q ss_pred CcceeEEEeecCCCCCCCcccHHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHH
Q 000958 184 GYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIA 239 (1208)
Q Consensus 184 G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~GRTTt~Mvi~ 239 (1208)
|+. |++||+.... ++++++++|.+++.+.| ..++|||.+|+ ||..++.++
T Consensus 57 gl~--y~~iPv~~~~-~~~~~v~~f~~~~~~~~--~pvL~HC~sG~-Rt~~l~al~ 106 (135)
T TIGR01244 57 GVT--YHHQPVTAGD-ITPDDVETFRAAIGAAE--GPVLAYCRSGT-RSSLLWGFR 106 (135)
T ss_pred CCe--EEEeecCCCC-CCHHHHHHHHHHHHhCC--CCEEEEcCCCh-HHHHHHHHH
Confidence 555 9999999765 78999999999998764 66999999999 987765543
No 26
>PRK12361 hypothetical protein; Provisional
Probab=96.86 E-value=0.0012 Score=81.72 Aligned_cols=57 Identities=25% Similarity=0.516 Sum_probs=48.0
Q ss_pred eeEEEeecCCCCCCCcccHHHHHHHhhcCC-CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 187 VDYERVPVTDEKSPKEQDFDILVDKISQTD-LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 187 l~Y~RiPItD~~~P~~~~~D~fi~~v~~lp-~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
+.|++||+.|+..|+.+++++.++|+.+.- .+..+.+||.+|+|||.+.++++ ||..
T Consensus 143 i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ay-Lm~~ 200 (547)
T PRK12361 143 IDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAY-LLCK 200 (547)
T ss_pred ceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHH-HHHh
Confidence 349999999999999999999999998764 46789999999999998855554 5543
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.77 E-value=0.0033 Score=64.08 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=42.4
Q ss_pred CeeEEEeecCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCchhHHHHHH
Q 000958 605 PIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIA 658 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GRTTt~Mv~~ 658 (1208)
|+.|+.||+.... +.++++.+|..++.+++ .+++|||.+|+ ||...+.++
T Consensus 57 gl~y~~iPv~~~~-~~~~~v~~f~~~~~~~~--~pvL~HC~sG~-Rt~~l~al~ 106 (135)
T TIGR01244 57 GVTYHHQPVTAGD-ITPDDVETFRAAIGAAE--GPVLAYCRSGT-RSSLLWGFR 106 (135)
T ss_pred CCeEEEeecCCCC-CCHHHHHHHHHHHHhCC--CCEEEEcCCCh-HHHHHHHHH
Confidence 9999999999754 79999999999998653 67999999999 987766554
No 28
>PRK12361 hypothetical protein; Provisional
Probab=96.76 E-value=0.0021 Score=79.65 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=51.8
Q ss_pred CeeEEEeecCCCCCCChhhHHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 605 PIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
++.|.+||+.|+..|..+++++.++++.+.. .+..+.+||.+|+|||.+.++.|.|.+
T Consensus 142 ~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~ 200 (547)
T PRK12361 142 DIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCK 200 (547)
T ss_pred CceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHh
Confidence 6899999999999999999999999998765 567899999999999999888886543
No 29
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=96.45 E-value=0.0089 Score=63.10 Aligned_cols=40 Identities=30% Similarity=0.387 Sum_probs=26.4
Q ss_pred CCccCCCCcceeeccCCCHHHHHHHHHHhccCCCCCCceEEEEEcCCCce
Q 000958 46 PNYRQADSLRVHGVAIPTIEGIRNVLKHIGAQKDGKRVQVLWISLREEPV 95 (1208)
Q Consensus 46 PNFR~~~~l~V~G~aQPs~~gi~~vl~~L~~~~~g~~~~ivwvdLREEph 95 (1208)
.||-.|.. .||=||||+..++.- |+.|+=+ .+|+||.|+.
T Consensus 5 ~nF~~V~~-~vYRS~~P~~~n~~f-L~~L~LK--------TII~L~~e~~ 44 (164)
T PF03162_consen 5 LNFGMVEP-GVYRSAQPTPANFPF-LERLGLK--------TIINLRPEPP 44 (164)
T ss_dssp TT-EEEET-TEEEESS--HHHHHH-HHHHT-S--------EEEE--SS--
T ss_pred ccccCCCC-CccCCCCCChhhHHH-HHHCCCc--------eEEEecCCCC
Confidence 49999987 999999999999985 6667644 7788887764
No 30
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.43 E-value=0.0092 Score=59.07 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=42.8
Q ss_pred ccChHHHHHHhhhcCcceeEEEeecCCCCCCCcccHHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHH
Q 000958 170 VKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIA 239 (1208)
Q Consensus 170 V~T~~Ev~~~~~~~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~GRTTt~Mvi~ 239 (1208)
...+++.++.+ |+. |+.|||+.. .++.+++++|.+.+.++|+ .+++||..|. |.+..+.++
T Consensus 46 ~~~~~~~a~~~---Gl~--y~~iPv~~~-~~~~~~v~~f~~~l~~~~~--Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 46 SAEEAAAAEAL---GLQ--YVHIPVDGG-AITEEDVEAFADALESLPK--PVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HHCHHHHHHHC---T-E--EEE----TT-T--HHHHHHHHHHHHTTTT--SEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHHHHHHHc---CCe--EEEeecCCC-CCCHHHHHHHHHHHHhCCC--CEEEECCCCh-hHHHHHHHH
Confidence 34567777776 666 999999986 4899999999999999974 6999999997 877766665
No 31
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=96.43 E-value=0.015 Score=67.10 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=40.0
Q ss_pred CeeEEEeecCCCCCCC-hhhHHHHHHHHHhc----------CCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 605 PIKYARVPITDGKAPK-TSDFDMLAVNIASA----------SKDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP~-~ed~D~fi~~vr~~----------~~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
++.|..= ||++.|. +..|-.|+..+++. ...+++++||.+|.|||-||.++-.++.+
T Consensus 180 Hfqyt~W--Pd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~ 247 (298)
T PHA02740 180 HFQYTAW--PADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATE 247 (298)
T ss_pred EEeecCC--CCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHH
Confidence 4445444 5888884 45665565545421 14579999999999999999998877754
No 32
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.26 E-value=0.0078 Score=59.58 Aligned_cols=60 Identities=22% Similarity=0.404 Sum_probs=42.7
Q ss_pred cChHHHhhcccCCCCCeeEEEeecCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCchhHHHHHH
Q 000958 590 QTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIA 658 (1208)
Q Consensus 590 ~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GRTTt~Mv~~ 658 (1208)
..+++..+.. |+.|+-|||+.. .+.++++++|.+.+.++++ ++++||..|. |.+..+.++
T Consensus 47 ~~~~~~a~~~-----Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~~~--Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 47 AEEAAAAEAL-----GLQYVHIPVDGG-AITEEDVEAFADALESLPK--PVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp HCHHHHHHHC-----T-EEEE----TT-T--HHHHHHHHHHHHTTTT--SEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHHHHHHc-----CCeEEEeecCCC-CCCHHHHHHHHHHHHhCCC--CEEEECCCCh-hHHHHHHHH
Confidence 3566777777 999999999985 6999999999999999864 6999999997 877776665
No 33
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.09 E-value=0.0036 Score=69.61 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=37.6
Q ss_pred cCCCCCCCcccHHHHHHHhhcC---C-CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 194 VTDEKSPKEQDFDILVDKISQT---D-LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 194 ItD~~~P~~~~~D~fi~~v~~l---p-~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
=.|...| ++-.+..+++++ | ....+++||.||.|||.|||++-.|++.
T Consensus 193 W~D~~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~ 244 (302)
T COG5599 193 WVDFNVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRM 244 (302)
T ss_pred ccccCCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhc
Confidence 5677777 555555555554 4 6789999999999999999988888775
No 34
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=96.07 E-value=0.0069 Score=62.51 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=42.8
Q ss_pred CCCCcccHHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 198 KSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 198 ~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
.+|.++-++..++|+.+.|..+.+++||.+|++|+|....++.|..-
T Consensus 73 ~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala 119 (172)
T COG5350 73 IAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALA 119 (172)
T ss_pred cCCCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhc
Confidence 58999999999999999999999999999999999988877766554
No 35
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.01 E-value=0.012 Score=60.95 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=49.7
Q ss_pred CCeeEEEeecCCC-CCCChhhHHHHHHHHHh-cCCCCeEEEecCCCCCchhHHHHHHHHH
Q 000958 604 FPIKYARVPITDG-KAPKTSDFDMLAVNIAS-ASKDTAFVFNCQMGRGRTTTGTVIACLL 661 (1208)
Q Consensus 604 ~gl~Y~RIPitD~-~aP~~ed~D~fi~~vr~-~~~~~~l~FhCq~G~GRTTt~Mv~~~Li 661 (1208)
+|+.+.+||.+|. .+|.-+++..=++|+.+ ++.+--.-+||.+|+||++|-..+|.|.
T Consensus 74 ~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq 133 (183)
T KOG1719|consen 74 YGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQ 133 (183)
T ss_pred ccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhh
Confidence 3999999999997 68999999999999965 5577788999999999999976666554
No 36
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=95.84 E-value=0.0091 Score=66.70 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=41.9
Q ss_pred EEEeecCCCCCC-CcccHHHHHHHhhcCCC--CCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 189 YERVPVTDEKSP-KEQDFDILVDKISQTDL--NTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 189 Y~RiPItD~~~P-~~~~~D~fi~~v~~lp~--~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
|..-| |+..| ..+.+-+|+..++.... +.++++||.+|.|||.++.++..++..
T Consensus 163 y~~W~--d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~ 219 (258)
T smart00194 163 YTNWP--DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQ 219 (258)
T ss_pred eCCCC--CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHH
Confidence 44444 88888 45778888888877643 689999999999999998877766553
No 37
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=95.83 E-value=0.057 Score=62.39 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=41.3
Q ss_pred EEEeecCCCCCCC-hhhHHHHHHHHHhc-------------CCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 608 YARVPITDGKAPK-TSDFDMLAVNIASA-------------SKDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 608 Y~RIPitD~~aP~-~ed~D~fi~~vr~~-------------~~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
|+=.-=||++.|. +..|-+|+..++.. ...+++++||.+|.|||.||.++..++..
T Consensus 186 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~ 255 (303)
T PHA02742 186 FAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISK 255 (303)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHH
Confidence 3333445888885 45777777777642 12478999999999999999998877754
No 38
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.73 E-value=0.0074 Score=67.20 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=41.2
Q ss_pred eEEEeecCCCCCCChhhHHHHHHHHHhc---C-CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 607 KYARVPITDGKAPKTSDFDMLAVNIASA---S-KDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 607 ~Y~RIPitD~~aP~~ed~D~fi~~vr~~---~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
+|.=.-=.|++.| ++-.+.++++++ | ...++++||.||.|||.|||++-.|++
T Consensus 187 hf~y~nW~D~~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~ 243 (302)
T COG5599 187 HFQYINWVDFNVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLR 243 (302)
T ss_pred EEEecCccccCCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHh
Confidence 3444556799999 666666666654 4 678999999999999999999888875
No 39
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=95.71 E-value=0.015 Score=64.88 Aligned_cols=57 Identities=26% Similarity=0.373 Sum_probs=45.9
Q ss_pred CeeEEEeecCCCCCC-ChhhHHHHHHHHHhcCC--CCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 605 PIKYARVPITDGKAP-KTSDFDMLAVNIASASK--DTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP-~~ed~D~fi~~vr~~~~--~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
.+.|..-| |++.| ..+++-+|+..++.... ..++++||.+|.|||.++.++..++..
T Consensus 160 ~~~y~~W~--d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~ 219 (258)
T smart00194 160 HYHYTNWP--DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQ 219 (258)
T ss_pred EEeeCCCC--CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHH
Confidence 44555555 88999 56788888888887653 789999999999999999988877764
No 40
>PLN02727 NAD kinase
Probab=95.70 E-value=0.02 Score=73.34 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=52.5
Q ss_pred HHHhhcccCCCCCeeEEEeecCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCchhHHHHHHHHH
Q 000958 593 LEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLL 661 (1208)
Q Consensus 593 ~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GRTTt~Mv~~~Li 661 (1208)
+|..++. ||.|+-||+++..+|.++++++|.++++... ..++.+||..|.+||.+..++|--.
T Consensus 303 ~eAae~~-----GL~yVhIPVs~~~apt~EqVe~fa~~l~~sl-pkPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 303 DDAISSG-----KIEVVKIPVEVRTAPSAEQVEKFASLVSDSS-KKPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred HHHHHHc-----CCeEEEeecCCCCCCCHHHHHHHHHHHHhhc-CCCEEEECCCCCchHHHHHHHHHHH
Confidence 4445555 9999999999999999999999999995422 3579999999999999988888553
No 41
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.61 E-value=0.021 Score=66.35 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=45.9
Q ss_pred eeEEEeecCCCCCCC-cccHHHHHHHhhcCC--CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000958 187 VDYERVPVTDEKSPK-EQDFDILVDKISQTD--LNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1208)
Q Consensus 187 l~Y~RiPItD~~~P~-~~~~D~fi~~v~~lp--~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~ 245 (1208)
..+++...+|+..|+ ...+-+|+.-++... ..+|+++||-+|+|||.||+++=-|++.-
T Consensus 253 r~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~ 314 (374)
T KOG0791|consen 253 RHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQI 314 (374)
T ss_pred EEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHh
Confidence 457888899999993 334555555555554 35799999999999999999999998853
No 42
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=95.43 E-value=0.024 Score=62.15 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=44.4
Q ss_pred eeEEEee-cCCCCCCCc-ccHHHHHHHhhcC---CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 187 VDYERVP-VTDEKSPKE-QDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 187 l~Y~RiP-ItD~~~P~~-~~~D~fi~~v~~l---p~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
|..+..+ -+|+..|.. +++-+|+..++.. +.+..+++||.+|.|||.++.++..++..
T Consensus 130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~ 192 (231)
T cd00047 130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQR 192 (231)
T ss_pred EEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 3344433 568888887 7888888888876 35789999999999999998776666554
No 43
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=95.25 E-value=0.03 Score=57.96 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=49.8
Q ss_pred CeeEEEeecCCCC--CCChhhHHHHHHHHHhcCCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 605 PIKYARVPITDGK--APKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 605 gl~Y~RIPitD~~--aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
.+.+.-|..+|.. +|.++-++..++|+.+.|..+.+++||.+|.+|+|.+-.++-+..
T Consensus 59 ~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~al 118 (172)
T COG5350 59 TLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALAL 118 (172)
T ss_pred eEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhh
Confidence 5666667666664 899999999999999999999999999999999998887766643
No 44
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=95.12 E-value=0.012 Score=75.41 Aligned_cols=47 Identities=23% Similarity=0.428 Sum_probs=31.9
Q ss_pred cCCCCCCCcccHHHHHHHhhcC---C--CCCeEEEEcCCCCCchHHHHHHHHHH
Q 000958 194 VTDEKSPKEQDFDILVDKISQT---D--LNTEVIFNCQMGRGRTTTGMVIATLV 242 (1208)
Q Consensus 194 ItD~~~P~~~~~D~fi~~v~~l---p--~~t~L~FhCqaG~GRTTt~Mvi~~Li 242 (1208)
=+||.-|+ |.+.|++|+.++ - .++.|++||.||.|||.+-..|=.+|
T Consensus 1036 WPDHg~P~--D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l 1087 (1144)
T KOG0792|consen 1036 WPDHGVPD--DPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETAL 1087 (1144)
T ss_pred cccCCCCC--ChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHH
Confidence 34666554 566666666543 2 47899999999999998854443333
No 45
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.06 E-value=0.037 Score=64.29 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=47.5
Q ss_pred CeeEEEeecCCCCCCCh-hhHHHHHHHHHhcC--CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 605 PIKYARVPITDGKAPKT-SDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP~~-ed~D~fi~~vr~~~--~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
=..+++...+||+.|.+ ..+-+|+..++... ..+|+++||.+|.|||-||+++=-|++.
T Consensus 252 ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq 313 (374)
T KOG0791|consen 252 IRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQ 313 (374)
T ss_pred eEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHH
Confidence 34788999999999943 34556666666655 4579999999999999999999998875
No 46
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.03 E-value=0.028 Score=64.32 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=43.4
Q ss_pred eeEEEeecCCCCCCCcc-cHHHHHHHhhcCC-CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000958 187 VDYERVPVTDEKSPKEQ-DFDILVDKISQTD-LNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1208)
Q Consensus 187 l~Y~RiPItD~~~P~~~-~~D~fi~~v~~lp-~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~ 245 (1208)
++|.+||+.|...++-. .|+.-++||..+- .+.-+.+||++|.+|++|..++| ||+.+
T Consensus 122 ~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAY-lM~~~ 181 (285)
T KOG1716|consen 122 IKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAY-LMKYE 181 (285)
T ss_pred ceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHH-HHHHc
Confidence 44999999996655533 4777777776653 68999999999999999965555 55543
No 47
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=94.99 E-value=0.033 Score=64.27 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=36.9
Q ss_pred cCCCCCCC-cccHHHHHHHhhcC-------------CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 194 VTDEKSPK-EQDFDILVDKISQT-------------DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 194 ItD~~~P~-~~~~D~fi~~v~~l-------------p~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
=+|++.|. +..|=.|+..+++. +...++++||.+|.|||.||.++..+|..
T Consensus 191 Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~ 255 (303)
T PHA02742 191 WPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISK 255 (303)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHH
Confidence 35788775 45666666666531 12478999999999999999988766654
No 48
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=94.92 E-value=0.057 Score=59.26 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=42.7
Q ss_pred cCCCCCCCh-hhHHHHHHHHHhc---CCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 613 ITDGKAPKT-SDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 613 itD~~aP~~-ed~D~fi~~vr~~---~~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
-+|+..|.. +++.+|+..++.. ....++++||.+|.|||.++.++..++..
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~ 192 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQR 192 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 468888887 7888899888876 35779999999999999999887777654
No 49
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=94.92 E-value=0.032 Score=64.31 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=34.1
Q ss_pred CCCCCCCcccHHHHHHHhhcC-------------CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 195 TDEKSPKEQDFDILVDKISQT-------------DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 195 tD~~~P~~~~~D~fi~~v~~l-------------p~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
+|++.|. +.+.|++|++.. ....++++||.+|.|||.+|.++-..+..
T Consensus 187 Pd~gvP~--~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~ 247 (298)
T PHA02740 187 PADGFSH--DPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATE 247 (298)
T ss_pred CCCCcCC--CHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHH
Confidence 4777774 345566654221 23578999999999999999988777654
No 50
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=94.77 E-value=0.032 Score=67.53 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=35.3
Q ss_pred EEEee-cCCCCCCCc-ccHHHHHHHhhcCCC----------CCeEEEEcCCCCCchHHHHHHHH
Q 000958 189 YERVP-VTDEKSPKE-QDFDILVDKISQTDL----------NTEVIFNCQMGRGRTTTGMVIAT 240 (1208)
Q Consensus 189 Y~RiP-ItD~~~P~~-~~~D~fi~~v~~lp~----------~t~L~FhCqaG~GRTTt~Mvi~~ 240 (1208)
-+.++ =+||..|.. +.+..|++.++..+. ....++||.+|.|||.||++++.
T Consensus 425 QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~l 488 (535)
T PRK15375 425 VLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALV 488 (535)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHH
Confidence 33344 378777654 457777777766421 11238999999999999888864
No 51
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=94.67 E-value=0.067 Score=56.02 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=36.7
Q ss_pred cccChHHHhhcccCCCCCeeEEEeecCCCCCCChhhHHH-----------HHHHHHh----------------cCCCCeE
Q 000958 588 SVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDM-----------LAVNIAS----------------ASKDTAF 640 (1208)
Q Consensus 588 ~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~-----------fi~~vr~----------------~~~~~~l 640 (1208)
|..|+.|.-+.......++.|+.+|+.+.....+..+.. +..+++. +.++.++
T Consensus 48 DLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~ 127 (164)
T PF13350_consen 48 DLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPV 127 (164)
T ss_dssp E-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--E
T ss_pred ECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcE
Confidence 567888888877555669999999999987774333322 2222221 1122699
Q ss_pred EEecCCCCCchhHHHHHHHHH
Q 000958 641 VFNCQMGRGRTTTGTVIACLL 661 (1208)
Q Consensus 641 ~FhCq~G~GRTTt~Mv~~~Li 661 (1208)
+|||.+|+-||-.+.++...+
T Consensus 128 l~HC~aGKDRTG~~~alll~~ 148 (164)
T PF13350_consen 128 LFHCTAGKDRTGVVAALLLSL 148 (164)
T ss_dssp EEE-SSSSSHHHHHHHHHHHH
T ss_pred EEECCCCCccHHHHHHHHHHH
Confidence 999999999997665555333
No 52
>PHA02738 hypothetical protein; Provisional
Probab=94.56 E-value=0.16 Score=59.17 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=40.4
Q ss_pred EEEeecCCCCCCC-hhhHHHHHHHHHhc------------C---CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 608 YARVPITDGKAPK-TSDFDMLAVNIASA------------S---KDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 608 Y~RIPitD~~aP~-~ed~D~fi~~vr~~------------~---~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
|+=..=||++.|. +.+|-+|+..|++. . ..+++++||.+|.|||-||.++-.++.+
T Consensus 182 ~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~ 253 (320)
T PHA02738 182 FNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISR 253 (320)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHH
Confidence 3444446888885 45676777666531 0 1468999999999999999988877764
No 53
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=94.50 E-value=0.063 Score=56.23 Aligned_cols=69 Identities=20% Similarity=0.505 Sum_probs=32.1
Q ss_pred cccChHHHHHHh--hhcCcceeEEEeecCCCCCCCcccHH-----------------------------HHHHHhhcCCC
Q 000958 169 SVKAPLDVYEEL--QVEGYLVDYERVPVTDEKSPKEQDFD-----------------------------ILVDKISQTDL 217 (1208)
Q Consensus 169 ~V~T~~Ev~~~~--~~~G~~l~Y~RiPItD~~~P~~~~~D-----------------------------~fi~~v~~lp~ 217 (1208)
+..|+.|.-+.- ..+|.. |+.+|+.+.....+..+. .+++.+.+.+
T Consensus 48 DLRs~~E~~~~p~~~~~g~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~- 124 (164)
T PF13350_consen 48 DLRSPTERERAPDPLIDGVQ--YVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAP- 124 (164)
T ss_dssp E-S-HHHHHHHS----TT-E--EEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT-
T ss_pred ECCCccccccCCCCCcCCce--eeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-
Confidence 566677766651 122444 888888877777433222 2222223333
Q ss_pred CCeEEEEcCCCCCchHHHHHHHHHHH
Q 000958 218 NTEVIFNCQMGRGRTTTGMVIATLVY 243 (1208)
Q Consensus 218 ~t~L~FhCqaG~GRTTt~Mvi~~Li~ 243 (1208)
.+++|||.+|+-|| |++.+.|+.
T Consensus 125 -~p~l~HC~aGKDRT--G~~~alll~ 147 (164)
T PF13350_consen 125 -GPVLFHCTAGKDRT--GVVAALLLS 147 (164)
T ss_dssp ---EEEE-SSSSSHH--HHHHHHHHH
T ss_pred -CcEEEECCCCCccH--HHHHHHHHH
Confidence 69999999999999 555555544
No 54
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=93.93 E-value=0.072 Score=64.65 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=36.2
Q ss_pred eecCCCCCCCh-hhHHHHHHHHHhcC----------CCCeEEEecCCCCCchhHHHHHHHH
Q 000958 611 VPITDGKAPKT-SDFDMLAVNIASAS----------KDTAFVFNCQMGRGRTTTGTVIACL 660 (1208)
Q Consensus 611 IPitD~~aP~~-ed~D~fi~~vr~~~----------~~~~l~FhCq~G~GRTTt~Mv~~~L 660 (1208)
.-=|||+.|.. +.+..|++.++... .....++||.+|.|||-||++++.|
T Consensus 429 TnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~ll 489 (535)
T PRK15375 429 KNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVL 489 (535)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHH
Confidence 44489888654 56888888887642 1122389999999999999999653
No 55
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=93.80 E-value=0.043 Score=64.70 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=40.6
Q ss_pred EEEeecCCCCCCCc-ccHHHHHHHhh----cCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 189 YERVPVTDEKSPKE-QDFDILVDKIS----QTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 189 Y~RiPItD~~~P~~-~~~D~fi~~v~----~lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
|+=+.=+||+.|.+ .-+=.|++=|. +++.-..+++||.||.|||.||+||-.||-.
T Consensus 417 yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~ 477 (600)
T KOG0790|consen 417 YHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQ 477 (600)
T ss_pred hheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHH
Confidence 88888999999984 34444444442 2234468999999999999999988666543
No 56
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=93.79 E-value=0.11 Score=60.60 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=40.2
Q ss_pred CeeEEEeecCCCCCCC-hhhHHHHHHHHHhc-----------C-CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 605 PIKYARVPITDGKAPK-TSDFDMLAVNIASA-----------S-KDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP~-~ed~D~fi~~vr~~-----------~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
.+.|.-= ||++.|. ...|-+|+..++.. + ..+++++||.+|.|||.|+.++-.++.+
T Consensus 204 h~~y~~W--pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~ 273 (323)
T PHA02746 204 HFWFPDW--PDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQ 273 (323)
T ss_pred EEEECCC--CCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHH
Confidence 3444444 5888886 45666676666531 1 2379999999999999999888777654
No 57
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=93.78 E-value=0.079 Score=61.48 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=35.0
Q ss_pred cCCCCCCCc-ccHHHHHHHhhcC---------C---CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 194 VTDEKSPKE-QDFDILVDKISQT---------D---LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 194 ItD~~~P~~-~~~D~fi~~v~~l---------p---~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
=+|+..|.. ..|-.|+..++.. | ...++++||.+|.|||.+|.++-.++..
T Consensus 192 Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~ 255 (312)
T PHA02747 192 WFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQ 255 (312)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHH
Confidence 357777753 4555555544321 1 2368999999999999999888766654
No 58
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.73 E-value=0.1 Score=59.80 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=44.7
Q ss_pred CeeEEEeecCCCCCCChh-hHHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 605 PIKYARVPITDGKAPKTS-DFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP~~e-d~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
+++|.+||+.|.-.+.-. .++.-++|+..+. .+.-+.+||++|.+|++|..+-|.|..
T Consensus 121 ~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~ 180 (285)
T KOG1716|consen 121 GIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKY 180 (285)
T ss_pred CceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHH
Confidence 789999999995333322 3555566766665 788999999999999999988777764
No 59
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=93.71 E-value=0.047 Score=64.37 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=45.5
Q ss_pred eeEEEeecCCCCCCChh-hHHHHHHHHHh---c-CCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000958 606 IKYARVPITDGKAPKTS-DFDMLAVNIAS---A-SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1208)
Q Consensus 606 l~Y~RIPitD~~aP~~e-d~D~fi~~vr~---~-~~~~~l~FhCq~G~GRTTt~Mv~~~Li~~~ 664 (1208)
..|+=+.-|||+-|.+. .+-.|++-|.. . ....++++||.+|.|||.||+||-.|+-..
T Consensus 415 ~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I 478 (600)
T KOG0790|consen 415 WHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQI 478 (600)
T ss_pred hhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHH
Confidence 35777888999999764 66667776632 2 255689999999999999999987777553
No 60
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.68 E-value=0.096 Score=58.53 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=48.1
Q ss_pred CCeeEEEeecCCCCCCChhh-HHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHHHHHHHHHh
Q 000958 604 FPIKYARVPITDGKAPKTSD-FDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1208)
Q Consensus 604 ~gl~Y~RIPitD~~aP~~ed-~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~~~~~ 666 (1208)
..+.|.+|||.||-.-.-+. |-.=|+|+-++- ++.++++||.+|..|+.|-.|.|.|-+.+++
T Consensus 216 g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~ls 280 (343)
T KOG1717|consen 216 GEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLS 280 (343)
T ss_pred CceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccc
Confidence 37889999999986543322 233356777665 8899999999999999999998888765544
No 61
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=93.63 E-value=0.12 Score=60.05 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=39.0
Q ss_pred EEEeecCCCCCCC-hhhHHHHHHHHHhc---------C---CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 608 YARVPITDGKAPK-TSDFDMLAVNIASA---------S---KDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 608 Y~RIPitD~~aP~-~ed~D~fi~~vr~~---------~---~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
|+=.-=||++.|. ..+|-.|+..++.. + ..+++++||.+|.|||-||.++-.++.+
T Consensus 187 ~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~ 255 (312)
T PHA02747 187 FQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQ 255 (312)
T ss_pred EEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHH
Confidence 3333445888885 45676776655321 1 2368999999999999999988766654
No 62
>PHA02738 hypothetical protein; Provisional
Probab=93.37 E-value=0.11 Score=60.68 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=36.5
Q ss_pred eecCCCCCCCc-ccHHHHHHHhhcC---------C------CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 192 VPVTDEKSPKE-QDFDILVDKISQT---------D------LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 192 iPItD~~~P~~-~~~D~fi~~v~~l---------p------~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
..=+|+..|.. .+|=.|+..+++. . ...++++||.+|.|||.+|.++-.++..
T Consensus 185 ~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~ 253 (320)
T PHA02738 185 TAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISR 253 (320)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHH
Confidence 33457777753 4555555545431 0 1368999999999999999888877765
No 63
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=93.27 E-value=0.12 Score=60.44 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=33.7
Q ss_pred CCCCCCCc-ccHHHHHHHhhcC-----------C-CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 195 TDEKSPKE-QDFDILVDKISQT-----------D-LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 195 tD~~~P~~-~~~D~fi~~v~~l-----------p-~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
+|++.|.. ..|=.|+..+++. + ...++++||.+|.|||.+|.++-.++..
T Consensus 211 pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~ 273 (323)
T PHA02746 211 PDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQ 273 (323)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHH
Confidence 47777753 3444444444321 1 2379999999999999999877766654
No 64
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=93.19 E-value=0.095 Score=67.52 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=39.8
Q ss_pred eecCCCCCCCh-hhHHHHHHHHHhcC--CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 611 VPITDGKAPKT-SDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 611 IPitD~~aP~~-ed~D~fi~~vr~~~--~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
+.=|||+-|++ .+|-.|++.|++.- .++++++||.+|.|||.+-..|=.|+..
T Consensus 1034 taWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~l 1089 (1144)
T KOG0792|consen 1034 TAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCL 1089 (1144)
T ss_pred cccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHH
Confidence 45678888764 35666666666655 4789999999999999988777777654
No 65
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=92.86 E-value=0.12 Score=57.90 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=44.7
Q ss_pred eeEEEeecCCCCCCC-cccHHHHHHHhhcC-CCCCeEEEEcCCCCCchHHHHHHHHHH
Q 000958 187 VDYERVPVTDEKSPK-EQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLV 242 (1208)
Q Consensus 187 l~Y~RiPItD~~~P~-~~~~D~fi~~v~~l-p~~t~L~FhCqaG~GRTTt~Mvi~~Li 242 (1208)
..|.+|||.||-.-. ..-|-+-|+||-+. .++..+.+||-+|+.|+-|-.|+|.|=
T Consensus 218 f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMq 275 (343)
T KOG1717|consen 218 FIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQ 275 (343)
T ss_pred eeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHH
Confidence 349999999997765 33456668888876 478999999999999999977776653
No 66
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=91.97 E-value=0.21 Score=54.02 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=43.7
Q ss_pred CeeEEEeecCCCCCC-ChhhHHHHHHHHHhcC--CCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000958 605 PIKYARVPITDGKAP-KTSDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP-~~ed~D~fi~~vr~~~--~~~~l~FhCq~G~GRTTt~Mv~~~Li~~~ 664 (1208)
.+.|..- +|++.| ..+.+-.|++.+++.. ...++++||..|.|||.++.++..++...
T Consensus 137 ~~~~~~W--~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~ 197 (235)
T PF00102_consen 137 HFHYTNW--PDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQL 197 (235)
T ss_dssp EEEEESS--SSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHH
T ss_pred ceeeeec--cccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhcccc
Confidence 4455544 477777 4566666666666554 78999999999999999999998887654
No 67
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=91.21 E-value=0.29 Score=51.75 Aligned_cols=60 Identities=23% Similarity=0.452 Sum_probs=49.1
Q ss_pred eeEEEeecCCCC-CCCcccHHHHHHHhhcCC-CCCeEEEEcCCCCCchHHHHHHHHHHHHhhh
Q 000958 187 VDYERVPVTDEK-SPKEQDFDILVDKISQTD-LNTEVIFNCQMGRGRTTTGMVIATLVYLNRI 247 (1208)
Q Consensus 187 l~Y~RiPItD~~-~P~~~~~D~fi~~v~~lp-~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~~~ 247 (1208)
++|.+||++|+. ++.-..||..-+.|.+.. +...-.+||-||+.|+-. ..++.|||.+.+
T Consensus 61 ~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAs-LClAYLmK~~~m 122 (198)
T KOG1718|consen 61 IQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSAS-LCLAYLMKYHCM 122 (198)
T ss_pred ceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHH-HHHHHHHHHccc
Confidence 349999999974 555778888888888876 678889999999999976 788889988644
No 68
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=90.77 E-value=0.31 Score=52.81 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=37.8
Q ss_pred ecCCCCCC-CcccHHHHHHHhhcCC--CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000958 193 PVTDEKSP-KEQDFDILVDKISQTD--LNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1208)
Q Consensus 193 PItD~~~P-~~~~~D~fi~~v~~lp--~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~ 245 (1208)
.-+++..| +.+.+=.|++.++... .+..+++||..|.|||.+|.++..++..-
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~ 197 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQL 197 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHH
T ss_pred eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhcccc
Confidence 44577777 3444444444444443 67999999999999999988887776653
No 69
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=90.72 E-value=0.14 Score=61.92 Aligned_cols=56 Identities=25% Similarity=0.458 Sum_probs=41.4
Q ss_pred EEEeecCCCCCCCcccHHHHHHHhhc---CCCCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000958 189 YERVPVTDEKSPKEQDFDILVDKISQ---TDLNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1208)
Q Consensus 189 Y~RiPItD~~~P~~~~~D~fi~~v~~---lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~ 245 (1208)
-.++|.+||.+|.-+.+=.|.+-+.+ .++.--.++||.+|+|||++ ||.|.|+...
T Consensus 75 V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~-~icA~L~~~~ 133 (434)
T KOG2283|consen 75 VARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGV-MICAYLIYSG 133 (434)
T ss_pred eeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEE-EEeHHHHhhh
Confidence 45689999999996665555433322 23556779999999999988 8888888774
No 70
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=90.56 E-value=0.18 Score=65.63 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=48.2
Q ss_pred eEEEeecCCCCCCCh-hhHHHHHHHHHhcC--CCCeEEEecCCCCCchhHHHHHHHHHHHHHh
Q 000958 607 KYARVPITDGKAPKT-SDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1208)
Q Consensus 607 ~Y~RIPitD~~aP~~-ed~D~fi~~vr~~~--~~~~l~FhCq~G~GRTTt~Mv~~~Li~~~~~ 666 (1208)
.||=--=+||+.|.. ..+-.|+..+|..+ ...++|+||.+|.|||.+|.++=.|+.....
T Consensus 697 qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~ 759 (1087)
T KOG4228|consen 697 QFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLEC 759 (1087)
T ss_pred eeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHh
Confidence 355556788999887 67778888888766 5589999999999999999999888876443
No 71
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=90.50 E-value=0.17 Score=65.86 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=42.3
Q ss_pred cCCCCCCCc-ccHHHHHHHhhcCC--CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 194 VTDEKSPKE-QDFDILVDKISQTD--LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 194 ItD~~~P~~-~~~D~fi~~v~~lp--~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
=+||+.|.. ..+=.|+.-++..+ ....+|+||.||+|||.+|.+|=.|+..
T Consensus 703 Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~ 756 (1087)
T KOG4228|consen 703 WPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDR 756 (1087)
T ss_pred CCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHH
Confidence 578888875 67777777788775 5589999999999999999988888775
No 72
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=89.44 E-value=0.45 Score=50.43 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=30.2
Q ss_pred CeeEEEeecCCCCC----CChhhHHHHHHHHHhcCCCCeEEEecCCCCCchhHHHHHHH
Q 000958 605 PIKYARVPITDGKA----PKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIAC 659 (1208)
Q Consensus 605 gl~Y~RIPitD~~a----P~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GRTTt~Mv~~~ 659 (1208)
+++++.+|+..... +.++.+.+.++.+.+.. +-++.+||..|..||.+-..++-
T Consensus 56 ~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~-n~PvLiHC~~G~~rTG~vvg~lR 113 (164)
T PF03162_consen 56 GIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPR-NYPVLIHCNHGKDRTGLVVGCLR 113 (164)
T ss_dssp T-EEEE-------GGG----HHHHHHHHHHHH-GG-G-SEEEE-SSSSSHHHHHHHHHH
T ss_pred CceEEEeccccccCccccCCHHHHHHHHHHHhCCC-CCCEEEEeCCCCcchhhHHHHHH
Confidence 88999999987765 56777877777765443 45899999999999866444443
No 73
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=87.22 E-value=2.7 Score=43.07 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=46.1
Q ss_pred cCcceeEEEeecCCCCCCCcccHHHHHHHhhcC---CCCCeEEEEcCCCCCchHHHHHHH
Q 000958 183 EGYLVDYERVPVTDEKSPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIA 239 (1208)
Q Consensus 183 ~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~l---p~~t~L~FhCqaG~GRTTt~Mvi~ 239 (1208)
+|+. -.-.|-.|...|..+.+|..++.++.- .++..+-+||-+|.||.-.-.+++
T Consensus 61 ~GI~--Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvala 118 (173)
T KOG2836|consen 61 EGIT--VLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALA 118 (173)
T ss_pred cCce--EeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHH
Confidence 3555 788899999999999999999998754 368999999999999998755554
No 74
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=85.59 E-value=1.4 Score=46.91 Aligned_cols=58 Identities=29% Similarity=0.490 Sum_probs=46.9
Q ss_pred CeeEEEeecCCC-CCCChhhHHHHHHHHHhcC-CCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 605 PIKYARVPITDG-KAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 605 gl~Y~RIPitD~-~aP~~ed~D~fi~~vr~~~-~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
++.|.+||+.|. .++..+-||.--+.+.+.. ++..-++||-+|..|+.+ +.++.|++.
T Consensus 60 ~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAs-LClAYLmK~ 119 (198)
T KOG1718|consen 60 DIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSAS-LCLAYLMKY 119 (198)
T ss_pred CceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHH-HHHHHHHHH
Confidence 889999999997 5667777887777887776 888999999999999875 455556654
No 75
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=84.25 E-value=1.7 Score=51.79 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=36.7
Q ss_pred eEEEeecCCCCCCCcccHHHHHHHhh-----cCCCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000958 188 DYERVPVTDEKSPKEQDFDILVDKIS-----QTDLNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1208)
Q Consensus 188 ~Y~RiPItD~~~P~~~~~D~fi~~v~-----~lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~ 243 (1208)
.|+-.--+|++.|+ +...++.+++ .-|....+++||.+|.|||-|+.++-..+.
T Consensus 266 ~~~~~~WPd~~~p~--~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~ 324 (415)
T KOG0789|consen 266 HYHYINWPDHGAPD--SVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALI 324 (415)
T ss_pred EEeeCCCccccCCc--chHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHH
Confidence 35555556775554 4455555553 234568999999999999999887774443
No 76
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=84.25 E-value=0.63 Score=56.42 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=41.8
Q ss_pred eEEEeecCCCCCCChhhHHHHHHHHHhc---CCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 607 KYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 607 ~Y~RIPitD~~aP~~ed~D~fi~~vr~~---~~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
+-.++|.+||.+|.-+.+-.|-+-+-+. .+..-.++||.+|+|||++ ||++-|+.
T Consensus 74 ~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~-~icA~L~~ 131 (434)
T KOG2283|consen 74 RVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGV-MICAYLIY 131 (434)
T ss_pred ceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEE-EEeHHHHh
Confidence 3456999999999998887776555442 3556789999999999986 56666664
No 77
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=83.10 E-value=2.5 Score=50.40 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=39.1
Q ss_pred eeEEEeecCCCCCCC-hhhHHHHHHH--HHhcCCCCeEEEecCCCCCchhHHHHHHHHHHH
Q 000958 606 IKYARVPITDGKAPK-TSDFDMLAVN--IASASKDTAFVFNCQMGRGRTTTGTVIACLLKL 663 (1208)
Q Consensus 606 l~Y~RIPitD~~aP~-~ed~D~fi~~--vr~~~~~~~l~FhCq~G~GRTTt~Mv~~~Li~~ 663 (1208)
..|+=.--||++.|. ...+=.++.. ....+...++++||.+|.|||-|+..+-..+..
T Consensus 265 ~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~ 325 (415)
T KOG0789|consen 265 VHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIE 325 (415)
T ss_pred EEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 355555668887776 3444444432 223345789999999999999999988855443
No 78
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=82.60 E-value=5.9 Score=40.76 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=47.3
Q ss_pred CeeEEEeecCCCCCCChhhHHHHHHHHHhc---CCCCeEEEecCCCCCchhHHHHHH
Q 000958 605 PIKYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIA 658 (1208)
Q Consensus 605 gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~---~~~~~l~FhCq~G~GRTTt~Mv~~ 658 (1208)
|++-.-.|..|...|..+.+|..++.++.. .|+..+-+||-+|.||.-.-.+++
T Consensus 62 GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvala 118 (173)
T KOG2836|consen 62 GITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALA 118 (173)
T ss_pred CceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHH
Confidence 999999999999999999999999988764 388999999999999987655554
No 79
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.35 E-value=9.4 Score=38.75 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=55.3
Q ss_pred CeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEeecCCCCCCCcccHHHHHHHhhcCCCCCeEEEE
Q 000958 145 NKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFN 224 (1208)
Q Consensus 145 ~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~lp~~t~L~Fh 224 (1208)
|.-.+...-.||+-..++ +-..+++..+.. |.- |..||++... +++++|+.|.+.+.++ .-.+.-|
T Consensus 28 GFksiI~nRPDgEe~~QP------~~~~i~~aa~~a---Gl~--y~~iPV~~~~-iT~~dV~~f~~Al~ea--egPVlay 93 (130)
T COG3453 28 GFKSIICNRPDGEEPGQP------GFAAIAAAAEAA---GLT--YTHIPVTGGG-ITEADVEAFQRALDEA--EGPVLAY 93 (130)
T ss_pred ccceecccCCCCCCCCCC------ChHHHHHHHHhc---CCc--eEEeecCCCC-CCHHHHHHHHHHHHHh--CCCEEee
Confidence 333444555566542222 334456666655 655 9999999865 8899999999999988 5678899
Q ss_pred cCCCCCchHHHHHHHHHHH
Q 000958 225 CQMGRGRTTTGMVIATLVY 243 (1208)
Q Consensus 225 CqaG~GRTTt~Mvi~~Li~ 243 (1208)
|+.| .|+|+ +|.+..
T Consensus 94 CrsG-tRs~~---ly~~~~ 108 (130)
T COG3453 94 CRSG-TRSLN---LYGLGE 108 (130)
T ss_pred ecCC-chHHH---HHHHHH
Confidence 9999 56654 454444
No 80
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.14 E-value=12 Score=38.14 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=45.1
Q ss_pred cChHHHhhcccCCCCCeeEEEeecCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 590 QTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 590 ~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
..+++..++. |+.|.-|||+- .-++++||+.|...+-++. .++.-||+.| .|+|+ +|.+..
T Consensus 48 ~~i~~aa~~a-----Gl~y~~iPV~~-~~iT~~dV~~f~~Al~eae--gPVlayCrsG-tRs~~---ly~~~~ 108 (130)
T COG3453 48 AAIAAAAEAA-----GLTYTHIPVTG-GGITEADVEAFQRALDEAE--GPVLAYCRSG-TRSLN---LYGLGE 108 (130)
T ss_pred HHHHHHHHhc-----CCceEEeecCC-CCCCHHHHHHHHHHHHHhC--CCEEeeecCC-chHHH---HHHHHH
Confidence 3445555555 99999999998 4589999999988877654 5688999999 55553 444443
No 81
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=64.28 E-value=18 Score=40.76 Aligned_cols=58 Identities=21% Similarity=0.303 Sum_probs=46.4
Q ss_pred ceeEEEeecCCCC----CCCcccHHHHHHHhhcC---CCCCeEEEEcCCCCCchHHHHHHHHH--HHHh
Q 000958 186 LVDYERVPVTDEK----SPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIATL--VYLN 245 (1208)
Q Consensus 186 ~l~Y~RiPItD~~----~P~~~~~D~fi~~v~~l---p~~t~L~FhCqaG~GRTTt~Mvi~~L--i~~~ 245 (1208)
+|+|+.|-|..++ -|.....|.-|.-.-++ ..+-.+..||..|.=|| +.+++|| +++|
T Consensus 109 ~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRt--g~lVgclRklq~W 175 (249)
T KOG1572|consen 109 GIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRT--GCLVGCLRKLQNW 175 (249)
T ss_pred CceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcch--hhhHHHHHHHhcc
Confidence 4559999999998 89888888887766553 37899999999999999 5677777 4444
No 82
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=56.37 E-value=18 Score=45.84 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=38.1
Q ss_pred EEEeecCCCCCCChhhHHHHHHHHHhc---C--CCCeEEEecCCCCCchhHHHHHHHHHHHHHh
Q 000958 608 YARVPITDGKAPKTSDFDMLAVNIASA---S--KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 666 (1208)
Q Consensus 608 Y~RIPitD~~aP~~ed~D~fi~~vr~~---~--~~~~l~FhCq~G~GRTTt~Mv~~~Li~~~~~ 666 (1208)
||=+--++++-|.-. ..+++|-|+- - ...++++||..|-|||.|.. +.||++..+.
T Consensus 895 FHfLSWp~egvPasa--rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yi-liDmvl~Rm~ 955 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASA--RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYI-LIDMVLNRMA 955 (1004)
T ss_pred eeeecccccCCccch--HHHHHHHHHhhhhccCCCCceEEEccCCCCccceee-eHHHHHHHHh
Confidence 455566677666543 3445555443 2 56899999999999999884 4577766555
No 83
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=55.56 E-value=19 Score=37.19 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=37.2
Q ss_pred CcccChHHHhhcccCCCCCeeEEEeecCCCCCCChhhHHHHHHHHHhc-C-CCCeEEEecCCCCCchhHHHH
Q 000958 587 ESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASA-S-KDTAFVFNCQMGRGRTTTGTV 656 (1208)
Q Consensus 587 ~~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~-~-~~~~l~FhCq~G~GRTTt~Mv 656 (1208)
=||.||+|+-.-+.+..+++=|.-. ++..+-.+. .|++.+... | .+.-|+|+|+.|+ |..+|--
T Consensus 42 lDVRepeEfk~gh~~~siNiPy~~~--~~~~~l~~~---eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~A~~ 107 (136)
T KOG1530|consen 42 LDVREPEEFKQGHIPASINIPYMSR--PGAGALKNP---EFLKQVGSSKPPHDKEIIFGCASGV-RSLKATK 107 (136)
T ss_pred EeecCHHHhhccCCcceEecccccc--ccccccCCH---HHHHHhcccCCCCCCcEEEEeccCc-chhHHHH
Confidence 4889999987776554333333221 222222232 456666554 4 4558999999994 5555443
No 84
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=50.63 E-value=16 Score=41.39 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=26.5
Q ss_pred CCcccHHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 200 PKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 200 P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
...+.+-.++.++.+. .+-++.+||.+|+=||.+ +.+++...
T Consensus 119 ~~~e~~~~~~~l~~~~-e~~PvL~HC~~GkdRTGl--~~al~r~~ 160 (249)
T COG2365 119 DAAERLVELLQLLADA-ENGPVLIHCTAGKDRTGL--VAALYRKL 160 (249)
T ss_pred hhHHHHHHHHHHHhhc-ccCCEEEecCCCCcchHH--HHHHHHHH
Confidence 3444444444444443 368999999999999954 45544443
No 85
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=47.80 E-value=11 Score=45.28 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=47.8
Q ss_pred CcceeEEEeecCCCC-CCCcccHHHHHHHhhcC-----CCCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 184 GYLVDYERVPVTDEK-SPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 184 G~~l~Y~RiPItD~~-~P~~~~~D~fi~~v~~l-----p~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
|+. |.++--.-+. .|+.+.++.|++.+... .++.-+.+||-.|.-||.. |+.++|+..
T Consensus 86 g~~--Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nrtgy-LI~~yL~~~ 149 (393)
T KOG2386|consen 86 GVK--YLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGY-LICAYLADV 149 (393)
T ss_pred cee--EEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccce-eeeeeeeec
Confidence 544 9999888887 99999999999998764 3678999999999999987 666666554
No 86
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=45.90 E-value=31 Score=35.64 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=34.5
Q ss_pred cccChHHHHHHhhhcCcceeEEEeec---CCCCCCCcccHHHHHHHhhcC-C-CCCeEEEEcCCCCCchHHHHH
Q 000958 169 SVKAPLDVYEELQVEGYLVDYERVPV---TDEKSPKEQDFDILVDKISQT-D-LNTEVIFNCQMGRGRTTTGMV 237 (1208)
Q Consensus 169 ~V~T~~Ev~~~~~~~G~~l~Y~RiPI---tD~~~P~~~~~D~fi~~v~~l-p-~~t~L~FhCqaG~GRTTt~Mv 237 (1208)
||.|++|+=+-.....+ -||. ++..+-.+ -+|.+-+... | .+.-|+|+|+.|+ |+++|.-
T Consensus 43 DVRepeEfk~gh~~~si-----NiPy~~~~~~~~l~~---~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~A~~ 107 (136)
T KOG1530|consen 43 DVREPEEFKQGHIPASI-----NIPYMSRPGAGALKN---PEFLKQVGSSKPPHDKEIIFGCASGV-RSLKATK 107 (136)
T ss_pred eecCHHHhhccCCcceE-----eccccccccccccCC---HHHHHHhcccCCCCCCcEEEEeccCc-chhHHHH
Confidence 78888887664322223 3443 22222222 2455555544 4 5669999999995 7666543
No 87
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=45.73 E-value=16 Score=46.19 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=37.5
Q ss_pred EEEeecCCCCCCCcccHHHHHHHhhcCC-----CCCeEEEEcCCCCCchHHHHHHHHHHHHh
Q 000958 189 YERVPVTDEKSPKEQDFDILVDKISQTD-----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 245 (1208)
Q Consensus 189 Y~RiPItD~~~P~~~~~D~fi~~v~~lp-----~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~ 245 (1208)
||=+-=.++..|. .--.+++|=|... ..-.+++||-.|-|||.|.. +.|||.++
T Consensus 895 FHfLSWp~egvPa--sarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yi-liDmvl~R 953 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPA--SARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYI-LIDMVLNR 953 (1004)
T ss_pred eeeecccccCCcc--chHHHHHHHHHhhhhccCCCCceEEEccCCCCccceee-eHHHHHHH
Confidence 4445555666665 3345556655543 46899999999999999964 66788775
No 88
>PRK00915 2-isopropylmalate synthase; Validated
Probab=45.16 E-value=2.6e+02 Score=35.17 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=61.2
Q ss_pred cCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEeecCC
Q 000958 117 YTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTD 196 (1208)
Q Consensus 117 ~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~RiPItD 196 (1208)
+.|++.+++.++ -.+.++.++..|..+.+.-|+ +. ..+..-..++++.....|.. ..+||-|-
T Consensus 110 ~l~~s~~e~l~~----~~~~v~~ak~~g~~v~f~~ed--~~---------r~d~~~l~~~~~~~~~~Ga~--~i~l~DTv 172 (513)
T PRK00915 110 KLKMSREEVLEM----AVEAVKYARSYTDDVEFSAED--AT---------RTDLDFLCRVVEAAIDAGAT--TINIPDTV 172 (513)
T ss_pred HhCCCHHHHHHH----HHHHHHHHHHCCCeEEEEeCC--CC---------CCCHHHHHHHHHHHHHcCCC--EEEEccCC
Confidence 477888777442 234467788878777655442 21 11233344555555445655 88999888
Q ss_pred CCCCCcccHHHHHHHhhcC-C--CCCeEEEEcCCCCCch
Q 000958 197 EKSPKEQDFDILVDKISQT-D--LNTEVIFNCQMGRGRT 232 (1208)
Q Consensus 197 ~~~P~~~~~D~fi~~v~~l-p--~~t~L~FhCqaG~GRT 232 (1208)
... .|.++-.++..+++. | ++..|-|||+.=.|=-
T Consensus 173 G~~-~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlA 210 (513)
T PRK00915 173 GYT-TPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLA 210 (513)
T ss_pred CCC-CHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHH
Confidence 876 577777788777654 4 2367888888766533
No 89
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=44.71 E-value=1.3e+02 Score=33.51 Aligned_cols=83 Identities=16% Similarity=0.033 Sum_probs=54.3
Q ss_pred HHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEeecCCCCCCCcccHHHHHHHhhcC
Q 000958 136 IIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQT 215 (1208)
Q Consensus 136 iL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~l 215 (1208)
.++.+++.|-.+.+..++..+. ..+..-..++++.+...|.. ..+++-|.. ...|+++..+++.+++.
T Consensus 120 ~i~~a~~~G~~v~~~~~~~~~~---------~~~~~~l~~~~~~~~~~g~~--~i~l~Dt~G-~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 120 AIEAAKEAGLEVEGSLEDAFGC---------KTDPEYVLEVAKALEEAGAD--EISLKDTVG-LATPEEVAELVKALREA 187 (265)
T ss_pred HHHHHHHCCCeEEEEEEeecCC---------CCCHHHHHHHHHHHHHcCCC--EEEechhcC-CcCHHHHHHHHHHHHHh
Confidence 3566777787776665432110 12333345555555555655 888888855 58899999999999987
Q ss_pred CCCCeEEEEcCCCCC
Q 000958 216 DLNTEVIFNCQMGRG 230 (1208)
Q Consensus 216 p~~t~L~FhCqaG~G 230 (1208)
-++..|.|||+--.|
T Consensus 188 ~~~~~~~~H~Hn~~g 202 (265)
T cd03174 188 LPDVPLGLHTHNTLG 202 (265)
T ss_pred CCCCeEEEEeCCCCC
Confidence 655777777766554
No 90
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=39.95 E-value=3e+02 Score=34.53 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=60.0
Q ss_pred cCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEeecCC
Q 000958 117 YTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTD 196 (1208)
Q Consensus 117 ~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~RiPItD 196 (1208)
+.|+|.+++.++ -.+.++.++..|..+.+.-| |+.- .+..-..++++.....|.. ..+||-|-
T Consensus 107 ~l~~s~~e~l~~----~~~~v~~a~~~g~~v~f~~E--d~~r---------~d~~~l~~~~~~~~~~Ga~--~i~l~DTv 169 (494)
T TIGR00973 107 KLKMTRDEVLER----AVGMVKYAKNFTDDVEFSCE--DAGR---------TEIPFLARIVEAAINAGAT--TINIPDTV 169 (494)
T ss_pred HhCCCHHHHHHH----HHHHHHHHHHcCCeEEEEcC--CCCC---------CCHHHHHHHHHHHHHcCCC--EEEeCCCC
Confidence 478888887542 13446677777776655544 2211 1233445666665555655 78888887
Q ss_pred CCCCCcccHHHHHHHhhc-CCC--CCeEEEEcCCCCCch
Q 000958 197 EKSPKEQDFDILVDKISQ-TDL--NTEVIFNCQMGRGRT 232 (1208)
Q Consensus 197 ~~~P~~~~~D~fi~~v~~-lp~--~t~L~FhCqaG~GRT 232 (1208)
...- |.++-.++..+++ +|. +..|.|||+.-.|=-
T Consensus 170 G~~~-P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlA 207 (494)
T TIGR00973 170 GYAL-PAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLA 207 (494)
T ss_pred CCCC-HHHHHHHHHHHHHhhccccCceEEEEeCCCCChH
Confidence 7754 5666666666654 453 467899998877533
No 91
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=37.84 E-value=54 Score=31.12 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=15.5
Q ss_pred cCCCCeEEEecCCCCCchhHH
Q 000958 634 ASKDTAFVFNCQMGRGRTTTG 654 (1208)
Q Consensus 634 ~~~~~~l~FhCq~G~GRTTt~ 654 (1208)
.+++..++|+|+.| +|+..+
T Consensus 58 ~~~~~~ivvyC~~G-~rs~~a 77 (101)
T cd01518 58 LLKGKKVLMYCTGG-IRCEKA 77 (101)
T ss_pred hcCCCEEEEECCCc-hhHHHH
Confidence 36788899999988 666654
No 92
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=37.45 E-value=73 Score=30.12 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=17.0
Q ss_pred HhhcCCCCCeEEEEcCCCCCchH
Q 000958 211 KISQTDLNTEVIFNCQMGRGRTT 233 (1208)
Q Consensus 211 ~v~~lp~~t~L~FhCqaG~GRTT 233 (1208)
....+|++..++|+|..| +|+.
T Consensus 54 ~~~~~~~~~~ivv~C~~G-~rs~ 75 (100)
T cd01523 54 ILDQLPDDQEVTVICAKE-GSSQ 75 (100)
T ss_pred HHhhCCCCCeEEEEcCCC-CcHH
Confidence 455678889999999998 4653
No 93
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=34.62 E-value=43 Score=37.92 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.2
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHH
Q 000958 637 DTAFVFNCQMGRGRTTTGTVIACLLK 662 (1208)
Q Consensus 637 ~~~l~FhCq~G~GRTTt~Mv~~~Li~ 662 (1208)
+-++.+||.+|+=||-++.+++-.+.
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~ 161 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLV 161 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHh
Confidence 58999999999999987777665543
No 94
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=34.34 E-value=1.7e+02 Score=33.80 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=63.0
Q ss_pred cccCCCCHHHH-HHHHHHHHHHHHHHHHHcCCcEEEEeecCCCcccccccccccCcccChHHHhhcccCCCCCeeEEEee
Q 000958 534 LEYTGIDRERV-ERMEARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVP 612 (1208)
Q Consensus 534 ~~n~Gis~~~V-E~~E~~Lk~dil~e~~~~~g~ill~~e~~~~~~~~~we~v~~~~V~T~~Ev~~~~~~~~~gl~Y~RIP 612 (1208)
..|.|.+.+++ +... +++..++..|-.+.+.-++ -+. |. .+.++ -..++++.. ...|.+..+|+
T Consensus 103 ~~~~~~t~~e~l~~~~-----~~i~~a~~~G~~v~~~~~d-~~~--~~--r~~~~---~~~~~~~~~--~~~G~~~i~l~ 167 (280)
T cd07945 103 TEQLRKTPEEHFADIR-----EVIEYAIKNGIEVNIYLED-WSN--GM--RDSPD---YVFQLVDFL--SDLPIKRIMLP 167 (280)
T ss_pred HHHHCcCHHHHHHHHH-----HHHHHHHhCCCEEEEEEEe-CCC--CC--cCCHH---HHHHHHHHH--HHcCCCEEEec
Confidence 45668887765 3333 2345666666666654432 110 00 00111 112222222 22367777777
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCchhHHHHHHHHHHHH
Q 000958 613 ITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLR 664 (1208)
Q Consensus 613 itD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GRTTt~Mv~~~Li~~~ 664 (1208)
=|- +.-.|.++.+++..+++..++..|.||||.-. +|.++-.+...
T Consensus 168 DT~-G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~-----Gla~AN~laA~ 213 (280)
T cd07945 168 DTL-GILSPFETYTYISDMVKRYPNLHFDFHAHNDY-----DLAVANVLAAV 213 (280)
T ss_pred CCC-CCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCC-----CHHHHHHHHHH
Confidence 776 56788899999999988766778888888765 45555555433
No 95
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=33.94 E-value=3.5e+02 Score=31.13 Aligned_cols=103 Identities=13% Similarity=-0.026 Sum_probs=56.3
Q ss_pred ccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEeecC
Q 000958 116 EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVT 195 (1208)
Q Consensus 116 ~~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~RiPIt 195 (1208)
.|.+.+.+++.+.- .+.++.++..|..+.++-...-+.... ...+..-..++++.+...|.. ..+|+-|
T Consensus 103 ~~~~~s~~~~~~~~----~~~v~~ak~~G~~v~~~i~~~f~~~~~-----~~~~~~~~~~~~~~~~~~Ga~--~i~l~DT 171 (274)
T cd07938 103 KNINCSIAESLERF----EPVAELAKAAGLRVRGYVSTAFGCPYE-----GEVPPERVAEVAERLLDLGCD--EISLGDT 171 (274)
T ss_pred HHcCCCHHHHHHHH----HHHHHHHHHCCCeEEEEEEeEecCCCC-----CCCCHHHHHHHHHHHHHcCCC--EEEECCC
Confidence 34777765553322 234667888787775544432111000 011222333555555444554 7777777
Q ss_pred CCCCCCcccHHHHHHHhhcCCCCCeEEEEcCCCCC
Q 000958 196 DEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRG 230 (1208)
Q Consensus 196 D~~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~G 230 (1208)
-.. -.|.++-.++..+++.-++..|.|||+.-.|
T Consensus 172 ~G~-~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~G 205 (274)
T cd07938 172 IGV-ATPAQVRRLLEAVLERFPDEKLALHFHDTRG 205 (274)
T ss_pred CCc-cCHHHHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 666 4577787788877765345667777665543
No 96
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=33.69 E-value=87 Score=35.50 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=42.2
Q ss_pred CeeEEEeecCCCC----CCChhhHHHHHHHHHh-cC--CCCeEEEecCCCCCchhHHHHHHHHH
Q 000958 605 PIKYARVPITDGK----APKTSDFDMLAVNIAS-AS--KDTAFVFNCQMGRGRTTTGTVIACLL 661 (1208)
Q Consensus 605 gl~Y~RIPitD~~----aP~~ed~D~fi~~vr~-~~--~~~~l~FhCq~G~GRTTt~Mv~~~Li 661 (1208)
+|.|+-|-|.-++ -|.....|..|...-. +. .+-++..||..|+=||. .+++||-
T Consensus 109 ~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg--~lVgclR 170 (249)
T KOG1572|consen 109 GIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTG--CLVGCLR 170 (249)
T ss_pred CceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchh--hhHHHHH
Confidence 7788888888777 7888888887755543 32 78899999999988875 4777774
No 97
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=33.66 E-value=2e+02 Score=34.51 Aligned_cols=105 Identities=7% Similarity=-0.103 Sum_probs=59.8
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEe
Q 000958 113 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 192 (1208)
Q Consensus 113 ~N~~~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~Ri 192 (1208)
.+..|.+++.+++.+. + .++++.++..|..+.++-....|.... ...++.-..++++.+...|.. ..+|
T Consensus 148 h~~~n~~~t~~e~l~~---~-~~~v~~Ak~~Gl~v~~~is~~fg~p~~-----~r~~~~~l~~~~~~~~~~Gad--~I~l 216 (347)
T PLN02746 148 FSKSNINCSIEESLVR---Y-REVALAAKKHSIPVRGYVSCVVGCPIE-----GPVPPSKVAYVAKELYDMGCY--EISL 216 (347)
T ss_pred HHHHHhCCCHHHHHHH---H-HHHHHHHHHcCCeEEEEEEeeecCCcc-----CCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 4445688887777442 2 345777888887775444433332110 112344455666666555665 6777
Q ss_pred ecCCCCCCCcccHHHHHHHhhcCCCCCeEEEEcCCCC
Q 000958 193 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGR 229 (1208)
Q Consensus 193 PItD~~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~ 229 (1208)
+-|-..+ .|.++-.+++.+++.-+...|.|||+.-.
T Consensus 217 ~DT~G~a-~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 252 (347)
T PLN02746 217 GDTIGVG-TPGTVVPMLEAVMAVVPVDKLAVHFHDTY 252 (347)
T ss_pred cCCcCCc-CHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 7666654 47778888887776433333555555433
No 98
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=33.34 E-value=3.5e+02 Score=31.44 Aligned_cols=106 Identities=13% Similarity=0.004 Sum_probs=57.3
Q ss_pred ccccCCCCHHHH-HHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEe
Q 000958 114 NLEYTGINRARV-EQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 192 (1208)
Q Consensus 114 N~~~~Gis~~~v-e~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~Ri 192 (1208)
+..|.|++.+++ +.++ ++++.+++.|..+.++-...-+.... ...+..-..++++.+...|.. -.+|
T Consensus 107 ~~~n~~~~~~e~l~~~~-----~~v~~ak~~g~~v~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~G~d--~i~l 174 (287)
T PRK05692 107 SQKNINCSIAESLERFE-----PVAEAAKQAGVRVRGYVSCVLGCPYE-----GEVPPEAVADVAERLFALGCY--EISL 174 (287)
T ss_pred HHHHhCCCHHHHHHHHH-----HHHHHHHHcCCEEEEEEEEEecCCCC-----CCCCHHHHHHHHHHHHHcCCc--EEEe
Confidence 334588888775 3333 34667887787664333221111000 001222334444444444655 6666
Q ss_pred ecCCCCCCCcccHHHHHHHhhcCCCCCeEEEEcCCCCCch
Q 000958 193 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRT 232 (1208)
Q Consensus 193 PItD~~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~GRT 232 (1208)
+-|-... .|.++-.++..+++.-++..|.|||+.-.|-.
T Consensus 175 ~DT~G~~-~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla 213 (287)
T PRK05692 175 GDTIGVG-TPGQVRAVLEAVLAEFPAERLAGHFHDTYGQA 213 (287)
T ss_pred ccccCcc-CHHHHHHHHHHHHHhCCCCeEEEEecCCCCcH
Confidence 6666554 57788888888876433455667776655443
No 99
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=31.87 E-value=7.2e+02 Score=28.24 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=76.1
Q ss_pred cCCCceeeccCCCHHHHHHHHHHhcCCCCCCceEEEEccccceEEECCeeeeeccccCccccccccCCCCHHH-HHHHHH
Q 000958 471 VSGFPVYGVANPTIDGIRSVIRRIGHFKGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRER-VERMEA 549 (1208)
Q Consensus 471 v~~lpI~GsaQPS~~gl~~vl~~L~~~~~~~~VvwvdLREEpv~yiNG~p~slR~~~~~~~N~~~n~Gis~~~-VE~~E~ 549 (1208)
.++..+.+...+...+++..++..... +. .++.+ |+ +.| +. .+..|.|.+.++ ++....
T Consensus 59 ~~~~~~~~l~r~~~~~v~~a~~~~~~~-~~-~~i~i--------~~---~~s------~~-~~~~~~~~~~~~~~~~~~~ 118 (268)
T cd07940 59 VLNAEICGLARAVKKDIDAAAEALKPA-KV-DRIHT--------FI---ATS------DI-HLKYKLKKTREEVLERAVE 118 (268)
T ss_pred CCCCEEEEEccCCHhhHHHHHHhCCCC-CC-CEEEE--------Ee---cCC------HH-HHHHHhCCCHHHHHHHHHH
Confidence 356677888888888888887765320 11 11111 11 111 11 224566788664 344333
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCCCcccccccccccCcccChHHHhhccc-CCCCCeeEEEeecCCCCCCChhhHHHHH
Q 000958 550 RLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLE-DDGFPIKYARVPITDGKAPKTSDFDMLA 628 (1208)
Q Consensus 550 ~Lk~dil~e~~~~~g~ill~~e~~~~~~~~~we~v~~~~V~T~~Ev~~~~~-~~~~gl~Y~RIPitD~~aP~~ed~D~fi 628 (1208)
. +..++..+..+.+.-+ ...-.+++.+.+-.+ ....|.+-..|+=|- +.-.|+++-.++
T Consensus 119 ~-----i~~a~~~G~~v~~~~~--------------~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~~P~~v~~lv 178 (268)
T cd07940 119 A-----VEYAKSHGLDVEFSAE--------------DATRTDLDFLIEVVEAAIEAGATTINIPDTV-GYLTPEEFGELI 178 (268)
T ss_pred H-----HHHHHHcCCeEEEeee--------------cCCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHH
Confidence 3 3455555554443211 111134444333221 122356655555555 568899999999
Q ss_pred HHHHhcCCC--CeEEEecCCCCC
Q 000958 629 VNIASASKD--TAFVFNCQMGRG 649 (1208)
Q Consensus 629 ~~vr~~~~~--~~l~FhCq~G~G 649 (1208)
..+++..++ ..|.||||.-.|
T Consensus 179 ~~l~~~~~~~~i~l~~H~Hn~~G 201 (268)
T cd07940 179 KKLKENVPNIKVPISVHCHNDLG 201 (268)
T ss_pred HHHHHhCCCCceeEEEEecCCcc
Confidence 999987654 778888887664
No 100
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=30.66 E-value=2.7e+02 Score=32.27 Aligned_cols=116 Identities=11% Similarity=-0.025 Sum_probs=68.6
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEe
Q 000958 113 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 192 (1208)
Q Consensus 113 ~N~~~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~Ri 192 (1208)
.+..+.+.+.+++.+. + .++++.++..|-.+.+.-++ -+... .+ +..-..++++.+...|.. ..+|
T Consensus 101 h~~~~~~~t~~e~l~~---~-~~~i~~a~~~G~~v~~~~~d-~~~~~----r~---~~~~~~~~~~~~~~~G~~--~i~l 166 (280)
T cd07945 101 HCTEQLRKTPEEHFAD---I-REVIEYAIKNGIEVNIYLED-WSNGM----RD---SPDYVFQLVDFLSDLPIK--RIML 166 (280)
T ss_pred HHHHHHCcCHHHHHHH---H-HHHHHHHHhCCCEEEEEEEe-CCCCC----cC---CHHHHHHHHHHHHHcCCC--EEEe
Confidence 4555678887777442 2 34577788888777776653 12110 11 222344555554444655 7777
Q ss_pred ecCCCCCCCcccHHHHHHHhhcCCCCCeEEEEcCCCCCchHHHHHHHHHHHHhhhc
Q 000958 193 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYLNRIG 248 (1208)
Q Consensus 193 PItD~~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~GRTTt~Mvi~~Li~~~~~~ 248 (1208)
+-|-.. -.|.++-.+++.+++.-++..|.|||+.-. +|.++-.+.-.+.+
T Consensus 167 ~DT~G~-~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~-----Gla~AN~laA~~aG 216 (280)
T cd07945 167 PDTLGI-LSPFETYTYISDMVKRYPNLHFDFHAHNDY-----DLAVANVLAAVKAG 216 (280)
T ss_pred cCCCCC-CCHHHHHHHHHHHHhhCCCCeEEEEeCCCC-----CHHHHHHHHHHHhC
Confidence 776655 457778888888877545667777777655 45555555444443
No 101
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=28.75 E-value=30 Score=33.26 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=24.0
Q ss_pred cceEEEECCeecccccCCCCccccccccCChhHHHHHHHHHHHHH
Q 000958 902 EEAVVYINGTPFVLRELNKPVDTLKHVGITGPVVEHMEARLKEDI 946 (1208)
Q Consensus 902 EE~Vlyv~g~p~vlR~~~~p~~nv~~tGi~~~~vE~~E~~lk~d~ 946 (1208)
++|+|+|+||||.|.++.+ .++-|+.|-.+=|+.-
T Consensus 39 d~p~V~V~Gr~~~~~eVtq----------~p~LV~qMT~~EKEaY 73 (86)
T PF11521_consen 39 DDPTVMVAGRPYPYSEVTQ----------RPELVAQMTPEEKEAY 73 (86)
T ss_dssp SS-EEEETTEEEEHHHHHH-----------HHHHHHS-HHHHHHH
T ss_pred cCceEEECCEEeehhhcCc----------chHHHHHcCHHHHHHH
Confidence 4899999999999999742 2667777766555443
No 102
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=27.58 E-value=9.5e+02 Score=27.29 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=52.5
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEe
Q 000958 113 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 192 (1208)
Q Consensus 113 ~N~~~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~Ri 192 (1208)
.+..+.|.+.++.. + .+ .+.++.++..|..+.+.-+. .. ..+..-..++++.+..-|.. -..|
T Consensus 100 ~~~~~~~~~~~~~~--~-~~-~~~i~~a~~~G~~v~~~~~~--~~---------~~~~~~~~~~~~~~~~~G~~--~i~l 162 (268)
T cd07940 100 HLKYKLKKTREEVL--E-RA-VEAVEYAKSHGLDVEFSAED--AT---------RTDLDFLIEVVEAAIEAGAT--TINI 162 (268)
T ss_pred HHHHHhCCCHHHHH--H-HH-HHHHHHHHHcCCeEEEeeec--CC---------CCCHHHHHHHHHHHHHcCCC--EEEE
Confidence 33445777766532 1 11 23456677767655433221 11 11222233444444333544 5555
Q ss_pred ecCCCCCCCcccHHHHHHHhhcCCCC--CeEEEEcCCCCC
Q 000958 193 PVTDEKSPKEQDFDILVDKISQTDLN--TEVIFNCQMGRG 230 (1208)
Q Consensus 193 PItD~~~P~~~~~D~fi~~v~~lp~~--t~L~FhCqaG~G 230 (1208)
+-|-.. -.|.++-.+++.+++.-++ ..|.|||+.-.|
T Consensus 163 ~DT~G~-~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~G 201 (268)
T cd07940 163 PDTVGY-LTPEEFGELIKKLKENVPNIKVPISVHCHNDLG 201 (268)
T ss_pred CCCCCC-CCHHHHHHHHHHHHHhCCCCceeEEEEecCCcc
Confidence 555544 4678888888888875333 677777776654
No 103
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.52 E-value=2.6e+02 Score=31.15 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=58.5
Q ss_pred ccCCCCHHH-HHHHHHHHHHHHHHHHHHcCCcEEEEeecCCCcccccccccccCcccChHHHhhccc-CCCCCeeEEEee
Q 000958 535 EYTGIDRER-VERMEARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLE-DDGFPIKYARVP 612 (1208)
Q Consensus 535 ~n~Gis~~~-VE~~E~~Lk~dil~e~~~~~g~ill~~e~~~~~~~~~we~v~~~~V~T~~Ev~~~~~-~~~~gl~Y~RIP 612 (1208)
.+.+.+.++ ++..+..+ +.++..+-.+.+..++- .-. ..+++++.+-.+ ....|.+..+++
T Consensus 104 ~~~~~~~~~~~~~~~~~i-----~~a~~~G~~v~~~~~~~-----------~~~-~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 104 KNLNKSREEDLENAEEAI-----EAAKEAGLEVEGSLEDA-----------FGC-KTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred HHhCCCHHHHHHHHHHHH-----HHHHHCCCeEEEEEEee-----------cCC-CCCHHHHHHHHHHHHHcCCCEEEec
Confidence 344666543 35544444 35566665555533211 110 234444433321 122377888888
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 000958 613 ITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRG 649 (1208)
Q Consensus 613 itD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~G 649 (1208)
-|. +...|+++..+++.+++..++..+.||||.-.|
T Consensus 167 Dt~-G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~g 202 (265)
T cd03174 167 DTV-GLATPEEVAELVKALREALPDVPLGLHTHNTLG 202 (265)
T ss_pred hhc-CCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 886 479999999999999988776888888877654
No 104
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=26.42 E-value=3.6e+02 Score=30.47 Aligned_cols=101 Identities=21% Similarity=0.106 Sum_probs=54.1
Q ss_pred ccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEeecC
Q 000958 116 EYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVT 195 (1208)
Q Consensus 116 ~~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~RiPIt 195 (1208)
.+.|.|.+++.. .+ .+.++.+++.|-.+.+.-+. .. ..+..-..++++.....|.. ...|+-|
T Consensus 99 ~~~~~~~~~~~~---~~-~~~i~~a~~~G~~v~~~~~~--~~---------~~~~~~~~~~~~~~~~~G~~--~i~l~DT 161 (259)
T cd07939 99 HKLGKDRAWVLD---QL-RRLVGRAKDRGLFVSVGAED--AS---------RADPDFLIEFAEVAQEAGAD--RLRFADT 161 (259)
T ss_pred HHhCCCHHHHHH---HH-HHHHHHHHHCCCeEEEeecc--CC---------CCCHHHHHHHHHHHHHCCCC--EEEeCCC
Confidence 457778776532 12 23466777777655543321 11 11222233444444344554 6666666
Q ss_pred CCCCCCcccHHHHHHHhhc-CCCCCeEEEEcCCCCCchHH
Q 000958 196 DEKSPKEQDFDILVDKISQ-TDLNTEVIFNCQMGRGRTTT 234 (1208)
Q Consensus 196 D~~~P~~~~~D~fi~~v~~-lp~~t~L~FhCqaG~GRTTt 234 (1208)
-.. -.|+++-.++..+++ .|-.-.+|+|+-.|.|=.++
T Consensus 162 ~G~-~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~ 200 (259)
T cd07939 162 VGI-LDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANT 200 (259)
T ss_pred CCC-CCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHH
Confidence 654 456778888887765 45445666666666544333
No 105
>PRK00915 2-isopropylmalate synthase; Validated
Probab=26.32 E-value=9.4e+02 Score=30.32 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=82.4
Q ss_pred CCCceeeccCCCHHHHHHHHHHhcCCCCCCceEEEEccccceEEECCeeeeeccccCccccccccCCCCHHHH-HHHHHH
Q 000958 472 SGFPVYGVANPTIDGIRSVIRRIGHFKGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERV-ERMEAR 550 (1208)
Q Consensus 472 ~~lpI~GsaQPS~~gl~~vl~~L~~~~~~~~VvwvdLREEpv~yiNG~p~slR~~~~~~~N~~~n~Gis~~~V-E~~E~~ 550 (1208)
++..|.+.+++....++..++.+.+. +.. .-|+|+...+. ....+.|+|.+++ +.....
T Consensus 66 ~~~~i~a~~r~~~~did~a~~a~~~~-~~~---------~v~i~~~~Sd~----------h~~~~l~~s~~e~l~~~~~~ 125 (513)
T PRK00915 66 KNSTVCGLARAVKKDIDAAAEALKPA-EAP---------RIHTFIATSPI----------HMEYKLKMSREEVLEMAVEA 125 (513)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhcC-CCC---------EEEEEECCcHH----------HHHHHhCCCHHHHHHHHHHH
Confidence 45678888888888999998888642 111 12334432221 1123457887776 333333
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCcccccccccccCcccChHHHhhcccCCCCCeeEEEeecCCCCCCChhhHHHHHHH
Q 000958 551 LKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVN 630 (1208)
Q Consensus 551 Lk~dil~e~~~~~g~ill~~e~~~~~~~~~we~v~~~~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~fi~~ 630 (1208)
+..++..+..+.+.-|+. ...+..-..++++... ..|.+..+||=|-.. -.|.++..++..
T Consensus 126 -----v~~ak~~g~~v~f~~ed~-----------~r~d~~~l~~~~~~~~--~~Ga~~i~l~DTvG~-~~P~~~~~~i~~ 186 (513)
T PRK00915 126 -----VKYARSYTDDVEFSAEDA-----------TRTDLDFLCRVVEAAI--DAGATTINIPDTVGY-TTPEEFGELIKT 186 (513)
T ss_pred -----HHHHHHCCCeEEEEeCCC-----------CCCCHHHHHHHHHHHH--HcCCCEEEEccCCCC-CCHHHHHHHHHH
Confidence 456666666665533211 1111112223333322 226777888888854 588999999999
Q ss_pred HHhcCCC---CeEEEecCCCCCch
Q 000958 631 IASASKD---TAFVFNCQMGRGRT 651 (1208)
Q Consensus 631 vr~~~~~---~~l~FhCq~G~GRT 651 (1208)
+++..++ ..|-||||.-.|--
T Consensus 187 l~~~~~~~~~v~l~~H~HND~GlA 210 (513)
T PRK00915 187 LRERVPNIDKAIISVHCHNDLGLA 210 (513)
T ss_pred HHHhCCCcccceEEEEecCCCCHH
Confidence 9876543 78999998876533
No 106
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=26.12 E-value=65 Score=35.26 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCCchHHHHHHHHHHH
Q 000958 216 DLNTEVIFNCQMGRGRTTTGMVIATLVY 243 (1208)
Q Consensus 216 p~~t~L~FhCqaG~GRTTt~Mvi~~Li~ 243 (1208)
..+.+++|+...|.|+|+++-+++.-..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999998886554
No 107
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=25.63 E-value=3.3e+02 Score=34.50 Aligned_cols=142 Identities=18% Similarity=0.295 Sum_probs=85.5
Q ss_pred cceeeccCCCHHHHHHHHHHhccC-CCCCCceEEEEEcCCCceEEECCeeeEeecCCCCCCccccCCCCHHHHHHHHHHH
Q 000958 54 LRVHGVAIPTIEGIRNVLKHIGAQ-KDGKRVQVLWISLREEPVVYINGRPFVLRDVGRPFSNLEYTGINRARVEQMEARL 132 (1208)
Q Consensus 54 l~V~G~aQPs~~gi~~vl~~L~~~-~~g~~~~ivwvdLREEph~yiNG~p~s~r~~~~~~~N~~~~Gis~~~ve~~E~rl 132 (1208)
.-+.|-||+|.+.+.+-+.+|... ..| .-+-|| .+|+| ||.|- |. +.+.+ |
T Consensus 62 aELAGGGq~t~e~~~~~i~ql~~~lepG---~t~qfN-----~ifld--pylw~--------~q---ig~kr-------L 113 (717)
T COG4981 62 AELAGGGQVTEEIFTNAIEQLVSLLEPG---RTAQFN-----SIFLD--PYLWK--------LQ---IGGKR-------L 113 (717)
T ss_pred eeecCCcccCHHHHHHHHHHHHhccCCC---ccceee-----EEEec--hHHhh--------hc---CChHH-------H
Confidence 457799999999999999888653 223 335555 46776 67663 22 33333 3
Q ss_pred hHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEeecCCCCCCCcccHHHHHHHh
Q 000958 133 KEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKI 212 (1208)
Q Consensus 133 k~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v 212 (1208)
+.++...|-.| +|-. .+....++..--|+.+.+-..|+. |.-+ +.=+-++|-+.|++-
T Consensus 114 ----v~kara~G~~I-------~gvv----IsAGIP~le~A~ElI~~L~~~G~~--yv~f-----KPGtIeqI~svi~IA 171 (717)
T COG4981 114 ----VQKARASGAPI-------DGVV----ISAGIPSLEEAVELIEELGDDGFP--YVAF-----KPGTIEQIRSVIRIA 171 (717)
T ss_pred ----HHHHHhcCCCc-------ceEE----EecCCCcHHHHHHHHHHHhhcCce--eEEe-----cCCcHHHHHHHHHHH
Confidence 56677666665 1211 222233444455666766566776 7754 233445555666666
Q ss_pred hcCCCCCeEEEEcCCCCCc--------hHHHHHHHHHHHHhh
Q 000958 213 SQTDLNTEVIFNCQMGRGR--------TTTGMVIATLVYLNR 246 (1208)
Q Consensus 213 ~~lp~~t~L~FhCqaG~GR--------TTt~Mvi~~Li~~~~ 246 (1208)
+..| ...++.|-..|++= -+.-+.+|.=||.+.
T Consensus 172 ka~P-~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~ 212 (717)
T COG4981 172 KANP-TFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRD 212 (717)
T ss_pred hcCC-CCceEEEEecCccCCccchhhcccHHHHHHHHHhcCC
Confidence 6664 77888888888853 244455666666643
No 108
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=25.32 E-value=1.1e+02 Score=35.63 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHhhhcCcceeEEEeecCCCCCCCcccHHHHHHHhhcCC---CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 175 DVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTD---LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 175 Ev~~~~~~~G~~l~Y~RiPItD~~~P~~~~~D~fi~~v~~lp---~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
+++......|.+ +|...|.+ ++.+-.++.-+...+ ....-++++..|.|.||++.-++..+..
T Consensus 55 ~~~~~a~~~Ga~-~~l~~P~~------~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~ 120 (322)
T TIGR03815 55 ALWRAAAAVGAE-HVAVLPEA------EGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAAR 120 (322)
T ss_pred HHHHHHHHhChh-heeeCCCC------HHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHh
Confidence 344544444765 58888876 223333333332222 2467789999999999999999988764
No 109
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=25.02 E-value=87 Score=29.69 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=15.7
Q ss_pred CCCCCeEEEEcCCCCCchHHH
Q 000958 215 TDLNTEVIFNCQMGRGRTTTG 235 (1208)
Q Consensus 215 lp~~t~L~FhCqaG~GRTTt~ 235 (1208)
.+++..++|+|+.| +|+..+
T Consensus 58 ~~~~~~ivvyC~~G-~rs~~a 77 (101)
T cd01518 58 LLKGKKVLMYCTGG-IRCEKA 77 (101)
T ss_pred hcCCCEEEEECCCc-hhHHHH
Confidence 47888999999988 677543
No 110
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=24.59 E-value=2.4e+02 Score=32.27 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=56.3
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEEe
Q 000958 113 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERV 192 (1208)
Q Consensus 113 ~N~~~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~Ri 192 (1208)
.|-.+.|.+.+++.+ . -.++++.++..|-.+.+.-++.-+. +.....++++.....|.. -.+|
T Consensus 98 ~~~~~~~~~~~e~~~---~-~~~~i~~a~~~G~~v~~~~eda~r~-----------~~~~l~~~~~~~~~~g~~--~i~l 160 (262)
T cd07948 98 LREASHGKSITEIIE---S-AVEVIEFVKSKGIEVRFSSEDSFRS-----------DLVDLLRVYRAVDKLGVN--RVGI 160 (262)
T ss_pred HHHHHhCCCHHHHHH---H-HHHHHHHHHHCCCeEEEEEEeeCCC-----------CHHHHHHHHHHHHHcCCC--EEEE
Confidence 344457778766522 1 2344667777777776666542221 122345666665544655 4555
Q ss_pred ecCCCCCCCcccHHHHHHHhhcCCCCCeEEEEcCCCC
Q 000958 193 PVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGR 229 (1208)
Q Consensus 193 PItD~~~P~~~~~D~fi~~v~~lp~~t~L~FhCqaG~ 229 (1208)
+-|-. .-.|.++..+++.+++..+ ..|.|||+.-.
T Consensus 161 ~Dt~G-~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~ 195 (262)
T cd07948 161 ADTVG-IATPRQVYELVRTLRGVVS-CDIEFHGHNDT 195 (262)
T ss_pred CCcCC-CCCHHHHHHHHHHHHHhcC-CeEEEEECCCC
Confidence 55544 3567889999999887533 45555555444
No 111
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=23.99 E-value=73 Score=33.33 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.8
Q ss_pred EEEEcCCCCCchHHHHHHHHHHHH
Q 000958 221 VIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 221 L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
.+.++..|.|+||+++.++..+..
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~ 25 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALAR 25 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCccHHHHHHHHHhcccc
Confidence 478999999999999999998887
No 112
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=23.98 E-value=4e+02 Score=30.86 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=61.1
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCeEEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeE-EE
Q 000958 113 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDY-ER 191 (1208)
Q Consensus 113 ~N~~~~Gis~~~ve~~E~rlk~diL~ea~~~g~~i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y-~R 191 (1208)
.|..|.|+|.+++.+ + -.++++.++..|-.+.++-|..-- ......-+.-.+++++.....|. +. .+
T Consensus 101 ~~~~~~~~t~~e~l~---~-~~~~v~~a~~~g~~v~~~~ed~~r------~d~~~~v~~~~~~~~~~~~~~G~--~~~i~ 168 (279)
T cd07947 101 HIFKKLKMTREEAME---K-YLEIVEEALDHGIKPRCHLEDITR------ADIYGFVLPFVNKLMKLSKESGI--PVKIR 168 (279)
T ss_pred HHHHHhCcCHHHHHH---H-HHHHHHHHHHCCCeEEEEEEcccC------CCcccchHHHHHHHHHHHHHCCC--CEEEE
Confidence 444568888888754 2 245678888777777777643100 00000011234455554322354 33 67
Q ss_pred eecCCCCC-CC-----cccHHHHHHHhhcC-C-C--CCeEEEEcCCCCCchHH
Q 000958 192 VPVTDEKS-PK-----EQDFDILVDKISQT-D-L--NTEVIFNCQMGRGRTTT 234 (1208)
Q Consensus 192 iPItD~~~-P~-----~~~~D~fi~~v~~l-p-~--~t~L~FhCqaG~GRTTt 234 (1208)
|+-|-..+ |. |+++..++..+++. + + .-.+|+||-.|.+=.++
T Consensus 169 l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~ 221 (279)
T cd07947 169 LCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANA 221 (279)
T ss_pred eccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHH
Confidence 77776654 42 47888999988764 2 2 24566666666544333
No 113
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=22.67 E-value=76 Score=34.49 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 000958 217 LNTEVIFNCQMGRGRTTTGMVIATLVYL 244 (1208)
Q Consensus 217 ~~t~L~FhCqaG~GRTTt~Mvi~~Li~~ 244 (1208)
+..-+|++|.-|+|.||.+|=++ +|-
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGla--lRA 45 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQA--LRI 45 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHH--HHH
Confidence 67899999999999999876544 554
No 114
>PRK11032 hypothetical protein; Provisional
Probab=22.57 E-value=2.8e+02 Score=29.81 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=27.3
Q ss_pred ccCCccccccceeecc--C---CCCCCCCCCcccccCCCCccccCCCc
Q 000958 433 LRNGQVLGSQTVLKSD--H---CPGCQNQSLPERVEGAPNFREVSGFP 475 (1208)
Q Consensus 433 ~R~G~vL~~~tiLk~D--~---fp~~~~~~~~~~~~gapNFR~v~~lp 475 (1208)
+.+|.|.|.|++.+.. | | .-+....|-..||.--|+|.|.-|
T Consensus 114 Y~sGEvvg~G~LvC~~Cg~~~~~-~~p~~i~pCp~C~~~~F~R~~~~P 160 (160)
T PRK11032 114 YHSGEVVGLGNLVCEKCHHHLAF-YTPEVLPLCPKCGHDQFQRRPFEP 160 (160)
T ss_pred eecceeeecceEEecCCCCEEEe-cCCCcCCCCCCCCCCeeeeCCCCC
Confidence 5699999999987642 1 1 012223445668888899987544
No 115
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=22.52 E-value=5e+02 Score=30.13 Aligned_cols=103 Identities=12% Similarity=-0.026 Sum_probs=56.9
Q ss_pred cccCCCCHHH-HHHHHHHHHHHHHHHHHHcCCcEEEEeecCCCcccccccccccCcccChHHHhhccc-CCCCCeeEEEe
Q 000958 534 LEYTGIDRER-VERMEARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLE-DDGFPIKYARV 611 (1208)
Q Consensus 534 ~~n~Gis~~~-VE~~E~~Lk~dil~e~~~~~g~ill~~e~~~~~~~~~we~v~~~~V~T~~Ev~~~~~-~~~~gl~Y~RI 611 (1208)
..|.|++.++ ++.++..+ +.++..+..+...-...-+. ..+.-.+++.+.+..+ ....|.+-.+|
T Consensus 108 ~~n~~~~~~e~l~~~~~~v-----~~ak~~g~~v~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~G~d~i~l 174 (287)
T PRK05692 108 QKNINCSIAESLERFEPVA-----EAAKQAGVRVRGYVSCVLGC--------PYEGEVPPEAVADVAERLFALGCYEISL 174 (287)
T ss_pred HHHhCCCHHHHHHHHHHHH-----HHHHHcCCEEEEEEEEEecC--------CCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 4567899776 46666555 45566555443221100000 0111223333333221 12236776666
Q ss_pred ecCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCc
Q 000958 612 PITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGR 650 (1208)
Q Consensus 612 PitD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~GR 650 (1208)
+=|- +.-.|.++-+++..+++.-++..|.||||.-.|-
T Consensus 175 ~DT~-G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gl 212 (287)
T PRK05692 175 GDTI-GVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQ 212 (287)
T ss_pred cccc-CccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 6666 4558889999999998876556777787766543
No 116
>PLN02321 2-isopropylmalate synthase
Probab=22.15 E-value=9e+02 Score=31.47 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=59.2
Q ss_pred CccccCCCCHHHHHHHHHHHhHHHHHHHHhcCCe-EEEEecCCCCCCcccceeecCCcccChHHHHHHhhhcCcceeEEE
Q 000958 113 SNLEYTGINRARVEQMEARLKEDIIMEAARFGNK-ILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYER 191 (1208)
Q Consensus 113 ~N~~~~Gis~~~ve~~E~rlk~diL~ea~~~g~~-i~v~~e~~~g~~~~~~~~v~~~~V~T~~Ev~~~~~~~G~~l~Y~R 191 (1208)
.+-.+.++|.+++.++= .+.++.++..|.. +.+.-| |+. ..+..-..++++.....|.. ..+
T Consensus 196 h~~~~l~~t~ee~l~~~----~~~V~~Ak~~G~~~v~fs~E--Da~---------rtd~d~l~~~~~~a~~aGa~--~I~ 258 (632)
T PLN02321 196 HMEHKLRKTPDEVVEIA----RDMVKYARSLGCEDVEFSPE--DAG---------RSDPEFLYRILGEVIKAGAT--TLN 258 (632)
T ss_pred HHHHHhCCCHHHHHHHH----HHHHHHHHHcCCceEEEecc--cCC---------CCCHHHHHHHHHHHHHcCCC--EEE
Confidence 34445788988885422 3446778877653 444333 221 11233345566665555655 888
Q ss_pred eecCCCCCCCcccHHHHHHHhh-cCCC--CCeEEEEcCCCCC
Q 000958 192 VPVTDEKSPKEQDFDILVDKIS-QTDL--NTEVIFNCQMGRG 230 (1208)
Q Consensus 192 iPItD~~~P~~~~~D~fi~~v~-~lp~--~t~L~FhCqaG~G 230 (1208)
||-|-...- |.++-.+|..++ ..|. +.+|.|||+.=.|
T Consensus 259 L~DTvG~~~-P~~v~~li~~l~~~~~~~~~v~i~vH~HND~G 299 (632)
T PLN02321 259 IPDTVGYTL-PSEFGQLIADIKANTPGIENVIISTHCQNDLG 299 (632)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCCceEEEEeCCCCC
Confidence 888877754 455666666555 4553 5789999987554
No 117
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=21.62 E-value=1.2e+03 Score=29.45 Aligned_cols=141 Identities=11% Similarity=0.113 Sum_probs=80.1
Q ss_pred CCCceeeccCCCHHHHHHHHHHhcCCCCCCceEEEEccccceEEECCeeeeeccccCccccccccCCCCHHHHHH-HHHH
Q 000958 472 SGFPVYGVANPTIDGIRSVIRRIGHFKGCCPVFWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVER-MEAR 550 (1208)
Q Consensus 472 ~~lpI~GsaQPS~~gl~~vl~~L~~~~~~~~VvwvdLREEpv~yiNG~p~slR~~~~~~~N~~~n~Gis~~~VE~-~E~~ 550 (1208)
++..|.+.++...++++..++.+.+.+ .+ .-|+|+-..+.- ...+.|+|.+++.+ ....
T Consensus 63 ~~~~i~al~r~~~~did~a~~al~~~~--~~--------~v~i~~~~S~~h----------~~~~l~~s~~e~l~~~~~~ 122 (494)
T TIGR00973 63 KNPRVCGLARCVEKDIDAAAEALKPAE--KF--------RIHTFIATSPIH----------LEHKLKMTRDEVLERAVGM 122 (494)
T ss_pred CCCEEEEEcCCCHHhHHHHHHhccccC--CC--------EEEEEEccCHHH----------HHHHhCCCHHHHHHHHHHH
Confidence 345677778888899998888876321 11 123444332222 23345788777643 3332
Q ss_pred HHHHHHHHHHHcCCcEEEEeecCCCcccccccccccCcccChHHHhhcccCCCCCeeEEEeecCCCCCCChhhHHHHHHH
Q 000958 551 LKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVN 630 (1208)
Q Consensus 551 Lk~dil~e~~~~~g~ill~~e~~~~~~~~~we~v~~~~V~T~~Ev~~~~~~~~~gl~Y~RIPitD~~aP~~ed~D~fi~~ 630 (1208)
+..++..+..+.+.-|+ + .-.+..-..++++.... .|.+..+||=|- +.-.|.++.++++.
T Consensus 123 -----v~~a~~~g~~v~f~~Ed--~---------~r~d~~~l~~~~~~~~~--~Ga~~i~l~DTv-G~~~P~~~~~~i~~ 183 (494)
T TIGR00973 123 -----VKYAKNFTDDVEFSCED--A---------GRTEIPFLARIVEAAIN--AGATTINIPDTV-GYALPAEYGNLIKG 183 (494)
T ss_pred -----HHHHHHcCCeEEEEcCC--C---------CCCCHHHHHHHHHHHHH--cCCCEEEeCCCC-CCCCHHHHHHHHHH
Confidence 34556655555553321 1 11111222233333222 266777777777 45678888889988
Q ss_pred HHhcCC---CCeEEEecCCCCCch
Q 000958 631 IASASK---DTAFVFNCQMGRGRT 651 (1208)
Q Consensus 631 vr~~~~---~~~l~FhCq~G~GRT 651 (1208)
+++..+ +..|.||||.-.|-.
T Consensus 184 l~~~~~~~~~v~l~~H~HND~GlA 207 (494)
T TIGR00973 184 LRENVPNIDKAILSVHCHNDLGLA 207 (494)
T ss_pred HHHhhccccCceEEEEeCCCCChH
Confidence 877542 467999999877543
No 118
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.14 E-value=6e+02 Score=29.25 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=35.1
Q ss_pred CCeeEEEeecCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 000958 604 FPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRG 649 (1208)
Q Consensus 604 ~gl~Y~RIPitD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~G 649 (1208)
.|.+..+|+=|- +.-.|.++-.++..+++..++..+.||||.-.|
T Consensus 161 ~Ga~~i~l~DT~-G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~G 205 (274)
T cd07938 161 LGCDEISLGDTI-GVATPAQVRRLLEAVLERFPDEKLALHFHDTRG 205 (274)
T ss_pred cCCCEEEECCCC-CccCHHHHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 377777777777 457789999999999887666788888887654
No 119
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.74 E-value=3.4e+02 Score=24.28 Aligned_cols=47 Identities=30% Similarity=0.466 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhhhcHHHHHHHHHHhhc-------cCCChHHHHHHHHHHHHHHHH
Q 000958 303 QVDKVIDKCASMQNLREAIATYRNSIL-------RQPDEMKRQASLSFFVEYLER 350 (1208)
Q Consensus 303 ~VD~~Id~Cs~~~nLREaI~~~r~~~~-------~~~de~~r~~~l~~~l~~LeR 350 (1208)
.+..++. |+.--|..+||.-|+..++ ...++..|..+.++..+||+|
T Consensus 8 ~~~~Av~-~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~R 61 (69)
T PF04212_consen 8 LIKKAVE-ADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLER 61 (69)
T ss_dssp HHHHHHH-HHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3333433 5566688888877774322 335777888889999999998
No 120
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.40 E-value=4.2e+02 Score=31.83 Aligned_cols=102 Identities=9% Similarity=-0.091 Sum_probs=54.4
Q ss_pred cccCCCCHHHH-HHHHHHHHHHHHHHHHHcCCcEEEEeecCCCcccccccccccCcccChHHHhhcccCCCCCeeEEEee
Q 000958 534 LEYTGIDRERV-ERMEARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVP 612 (1208)
Q Consensus 534 ~~n~Gis~~~V-E~~E~~Lk~dil~e~~~~~g~ill~~e~~~~~~~~~we~v~~~~V~T~~Ev~~~~~~~~~gl~Y~RIP 612 (1208)
..|.|.+.+++ +.+.. ++..++..+-.+..+-.+.-|--.. ...+..-..++++.... .|.+..+|+
T Consensus 150 ~~n~~~t~~e~l~~~~~-----~v~~Ak~~Gl~v~~~is~~fg~p~~-----~r~~~~~l~~~~~~~~~--~Gad~I~l~ 217 (347)
T PLN02746 150 KSNINCSIEESLVRYRE-----VALAAKKHSIPVRGYVSCVVGCPIE-----GPVPPSKVAYVAKELYD--MGCYEISLG 217 (347)
T ss_pred HHHhCCCHHHHHHHHHH-----HHHHHHHcCCeEEEEEEeeecCCcc-----CCCCHHHHHHHHHHHHH--cCCCEEEec
Confidence 45678887765 33333 3456666665553322211110000 01112222333333322 277777777
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 000958 613 ITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGR 648 (1208)
Q Consensus 613 itD~~aP~~ed~D~fi~~vr~~~~~~~l~FhCq~G~ 648 (1208)
=|- +.-.|.++-+++..+++.-+...|.||||.-.
T Consensus 218 DT~-G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 252 (347)
T PLN02746 218 DTI-GVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTY 252 (347)
T ss_pred CCc-CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 776 45678999999999987655455666766544
Done!