Query 000959
Match_columns 1208
No_of_seqs 276 out of 1137
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 11:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 2.3E-46 5E-51 436.2 16.3 310 882-1206 111-503 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 8.7E-35 1.9E-39 290.7 13.7 155 915-1079 1-156 (156)
3 KOG1605 TFIIF-interacting CTD 100.0 1.4E-32 3E-37 295.5 9.4 174 914-1138 83-258 (262)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.8E-29 3.9E-34 252.3 14.5 158 920-1119 1-159 (162)
5 PF03031 NIF: NLI interacting 100.0 5.6E-29 1.2E-33 243.4 12.6 157 921-1133 1-159 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 99.9 4.8E-26 1E-30 236.4 12.9 166 915-1138 16-190 (195)
7 KOG2832 TFIIF-interacting CTD 99.9 1.1E-21 2.3E-26 217.4 11.9 158 917-1140 186-344 (393)
8 smart00577 CPDc catalytic doma 99.8 9.7E-21 2.1E-25 186.1 13.7 144 919-1080 1-145 (148)
9 COG5190 FCP1 TFIIF-interacting 99.8 5.1E-19 1.1E-23 199.5 9.1 177 911-1138 203-380 (390)
10 COG5190 FCP1 TFIIF-interacting 99.5 2.3E-14 5E-19 162.3 8.2 258 913-1199 19-336 (390)
11 KOG0323 TFIIF-interacting CTD 99.1 1.1E-11 2.3E-16 147.4 -3.0 578 139-1004 23-634 (635)
12 PF12738 PTCB-BRCT: twin BRCT 98.6 1.2E-07 2.5E-12 81.7 6.3 56 1147-1207 1-56 (63)
13 PF00533 BRCT: BRCA1 C Terminu 98.0 8.9E-06 1.9E-10 70.4 5.5 63 1140-1207 2-66 (78)
14 cd00027 BRCT Breast Cancer Sup 97.8 5.9E-05 1.3E-09 62.1 6.3 58 1146-1207 1-59 (72)
15 smart00292 BRCT breast cancer 97.7 5.8E-05 1.3E-09 63.6 5.7 62 1142-1207 1-65 (80)
16 cd01427 HAD_like Haloacid deha 97.3 0.00031 6.7E-09 64.0 5.3 62 922-1012 1-63 (139)
17 KOG3226 DNA repair protein [Re 97.1 0.00038 8.3E-09 79.5 4.0 61 1141-1206 315-375 (508)
18 TIGR01684 viral_ppase viral ph 97.1 0.0013 2.8E-08 74.0 7.5 75 914-1025 120-196 (301)
19 PHA03398 viral phosphatase sup 97.0 0.0017 3.7E-08 73.2 8.2 75 914-1025 122-198 (303)
20 TIGR01681 HAD-SF-IIIC HAD-supe 96.7 0.001 2.2E-08 65.1 3.1 80 974-1061 29-119 (128)
21 TIGR01662 HAD-SF-IIIA HAD-supe 96.6 0.0092 2E-07 57.4 8.7 100 922-1059 2-112 (132)
22 TIGR01685 MDP-1 magnesium-depe 96.5 0.0062 1.3E-07 63.7 7.4 99 971-1073 42-153 (174)
23 PRK14350 ligA NAD-dependent DN 96.2 0.013 2.9E-07 72.2 8.9 62 1143-1208 593-654 (669)
24 PRK07956 ligA NAD-dependent DN 96.2 0.015 3.3E-07 71.7 9.1 61 1144-1208 591-651 (665)
25 PRK06063 DNA polymerase III su 96.1 0.0082 1.8E-07 67.7 6.0 61 1143-1208 232-294 (313)
26 TIGR01261 hisB_Nterm histidino 96.0 0.021 4.6E-07 58.5 7.9 108 921-1060 2-130 (161)
27 TIGR01664 DNA-3'-Pase DNA 3'-p 96.0 0.021 4.6E-07 58.7 7.6 69 919-1012 12-93 (166)
28 PRK14351 ligA NAD-dependent DN 95.9 0.023 5E-07 70.4 8.9 62 1143-1208 609-671 (689)
29 PF05152 DUF705: Protein of un 95.9 0.022 4.7E-07 64.3 7.8 75 914-1025 116-192 (297)
30 PRK06195 DNA polymerase III su 95.9 0.014 3E-07 65.5 6.2 59 1143-1205 220-287 (309)
31 PHA02530 pseT polynucleotide k 95.8 0.0061 1.3E-07 66.2 3.2 130 917-1073 155-292 (300)
32 TIGR01672 AphA HAD superfamily 95.8 0.015 3.4E-07 63.4 6.1 101 915-1025 58-168 (237)
33 COG4996 Predicted phosphatase 95.6 0.041 8.8E-07 56.6 7.9 117 922-1063 2-129 (164)
34 TIGR01686 FkbH FkbH-like domai 95.6 0.013 2.8E-07 65.5 4.7 104 919-1061 2-114 (320)
35 PRK08942 D,D-heptose 1,7-bisph 95.4 0.057 1.2E-06 55.1 8.1 28 973-1000 28-56 (181)
36 TIGR01533 lipo_e_P4 5'-nucleot 95.4 0.065 1.4E-06 59.7 9.1 97 917-1025 72-172 (266)
37 TIGR00213 GmhB_yaeD D,D-heptos 95.4 0.043 9.4E-07 55.9 7.1 28 973-1000 25-53 (176)
38 PLN03122 Poly [ADP-ribose] pol 95.1 0.028 6.2E-07 70.6 5.8 63 1140-1208 186-253 (815)
39 TIGR00575 dnlj DNA ligase, NAD 94.9 0.045 9.7E-07 67.6 6.6 62 1143-1208 584-645 (652)
40 PF12689 Acid_PPase: Acid Phos 94.8 0.04 8.7E-07 57.8 5.3 121 920-1061 3-135 (169)
41 COG5275 BRCT domain type II [G 94.6 0.06 1.3E-06 58.8 5.9 66 1138-1207 151-217 (276)
42 TIGR01656 Histidinol-ppas hist 94.4 0.12 2.6E-06 51.4 7.3 64 922-1012 2-81 (147)
43 PRK11009 aphA acid phosphatase 94.1 0.049 1.1E-06 59.7 4.1 96 917-1025 60-170 (237)
44 COG0272 Lig NAD-dependent DNA 93.9 0.13 2.8E-06 63.5 7.5 63 1142-1208 593-655 (667)
45 PRK05446 imidazole glycerol-ph 93.4 0.31 6.6E-06 56.5 9.0 54 919-998 1-55 (354)
46 PLN03123 poly [ADP-ribose] pol 93.3 0.094 2E-06 67.4 5.1 63 1140-1207 390-455 (981)
47 TIGR02253 CTE7 HAD superfamily 93.2 0.094 2E-06 54.1 4.2 84 972-1060 92-177 (221)
48 PRK08238 hypothetical protein; 92.6 0.13 2.8E-06 61.5 4.7 91 973-1074 71-165 (479)
49 PF13419 HAD_2: Haloacid dehal 92.3 0.16 3.5E-06 48.8 4.1 86 971-1061 74-161 (176)
50 TIGR01689 EcbF-BcbF capsule bi 91.2 0.54 1.2E-05 47.4 6.7 50 974-1024 24-86 (126)
51 PF08645 PNK3P: Polynucleotide 91.2 0.36 7.9E-06 49.7 5.5 53 921-998 1-54 (159)
52 TIGR01663 PNK-3'Pase polynucle 91.1 0.49 1.1E-05 57.5 7.3 112 918-1060 166-294 (526)
53 TIGR01449 PGP_bact 2-phosphogl 91.1 0.3 6.6E-06 50.0 4.8 87 972-1063 83-171 (213)
54 TIGR01509 HAD-SF-IA-v3 haloaci 91.0 0.28 6E-06 48.6 4.4 83 973-1061 84-168 (183)
55 TIGR01668 YqeG_hyp_ppase HAD s 91.0 0.5 1.1E-05 48.5 6.3 58 918-1011 23-82 (170)
56 TIGR02254 YjjG/YfnB HAD superf 90.8 0.3 6.5E-06 50.2 4.6 84 972-1060 95-180 (224)
57 PLN02770 haloacid dehalogenase 90.0 0.41 9E-06 51.6 5.0 85 972-1061 106-192 (248)
58 PRK06769 hypothetical protein; 89.5 0.84 1.8E-05 47.1 6.5 28 973-1000 27-55 (173)
59 PRK13222 phosphoglycolate phos 89.3 0.63 1.4E-05 48.1 5.5 87 972-1063 91-179 (226)
60 TIGR01454 AHBA_synth_RP 3-amin 89.2 0.6 1.3E-05 48.2 5.2 96 972-1072 73-170 (205)
61 TIGR01428 HAD_type_II 2-haloal 89.2 0.43 9.4E-06 48.8 4.2 83 973-1060 91-175 (198)
62 PLN03243 haloacid dehalogenase 89.2 0.44 9.6E-06 52.4 4.5 87 972-1063 107-195 (260)
63 TIGR01993 Pyr-5-nucltdase pyri 88.7 0.32 7E-06 49.3 2.8 82 973-1060 83-168 (184)
64 TIGR01422 phosphonatase phosph 88.4 0.64 1.4E-05 49.7 4.9 87 973-1063 98-187 (253)
65 PF06941 NT5C: 5' nucleotidase 88.3 0.26 5.6E-06 51.1 1.9 78 973-1070 72-155 (191)
66 PRK10563 6-phosphogluconate ph 87.8 0.34 7.5E-06 50.4 2.5 95 972-1072 86-181 (221)
67 PRK13288 pyrophosphatase PpaX; 87.6 1 2.2E-05 46.8 5.7 87 972-1063 80-168 (214)
68 PRK09449 dUMP phosphatase; Pro 87.5 0.73 1.6E-05 48.0 4.6 83 973-1060 94-178 (224)
69 TIGR01489 DKMTPPase-SF 2,3-dik 87.4 1.2 2.5E-05 44.6 5.8 49 973-1023 71-120 (188)
70 TIGR01459 HAD-SF-IIA-hyp4 HAD- 87.3 1 2.2E-05 48.4 5.7 48 976-1024 26-76 (242)
71 PRK00192 mannosyl-3-phosphogly 86.6 1.3 2.8E-05 48.4 6.0 57 920-1013 4-61 (273)
72 TIGR00338 serB phosphoserine p 86.4 0.93 2E-05 47.1 4.6 49 973-1022 84-133 (219)
73 TIGR03333 salvage_mtnX 2-hydro 86.0 1.4 3E-05 46.5 5.7 51 972-1022 68-119 (214)
74 PF13344 Hydrolase_6: Haloacid 85.4 1.5 3.3E-05 41.9 5.2 31 976-1006 16-51 (101)
75 PRK10826 2-deoxyglucose-6-phos 85.2 1.1 2.3E-05 47.0 4.4 87 973-1064 91-179 (222)
76 PF08282 Hydrolase_3: haloacid 84.4 1.2 2.7E-05 45.4 4.4 36 976-1011 17-53 (254)
77 COG1011 Predicted hydrolase (H 83.9 1.4 3E-05 45.5 4.6 85 973-1062 98-183 (229)
78 PRK11587 putative phosphatase; 83.8 1.6 3.5E-05 45.8 5.1 85 972-1062 81-167 (218)
79 COG0561 Cof Predicted hydrolas 83.5 2.5 5.4E-05 45.5 6.4 59 919-1014 2-61 (264)
80 PRK13226 phosphoglycolate phos 83.5 1.8 4E-05 46.0 5.3 87 972-1063 93-181 (229)
81 PRK14988 GMP/IMP nucleotidase; 83.2 1.1 2.5E-05 47.7 3.7 86 973-1063 92-179 (224)
82 TIGR01491 HAD-SF-IB-PSPlk HAD- 82.6 3 6.5E-05 42.3 6.3 51 973-1024 79-130 (201)
83 TIGR01670 YrbI-phosphatas 3-de 81.9 3.8 8.2E-05 41.6 6.7 39 973-1013 29-68 (154)
84 PRK13223 phosphoglycolate phos 81.8 2.2 4.9E-05 47.0 5.4 84 973-1061 100-185 (272)
85 PLN02575 haloacid dehalogenase 81.5 1.9 4.1E-05 50.8 4.9 86 973-1063 215-302 (381)
86 TIGR02463 MPGP_rel mannosyl-3- 81.5 2.2 4.8E-05 44.6 5.0 34 979-1012 21-55 (221)
87 TIGR01456 CECR5 HAD-superfamil 81.5 2.4 5.3E-05 47.9 5.6 15 921-935 1-15 (321)
88 PRK10725 fructose-1-P/6-phosph 81.3 1.2 2.6E-05 45.0 2.8 85 973-1063 87-172 (188)
89 TIGR01549 HAD-SF-IA-v1 haloaci 80.7 3.4 7.3E-05 40.6 5.7 82 972-1060 62-144 (154)
90 TIGR02009 PGMB-YQAB-SF beta-ph 80.3 1.5 3.2E-05 44.0 3.1 82 973-1061 87-170 (185)
91 TIGR01487 SPP-like sucrose-pho 79.8 3.7 8E-05 43.0 5.9 39 976-1014 20-59 (215)
92 TIGR01544 HAD-SF-IE haloacid d 79.6 3.1 6.6E-05 47.2 5.6 52 972-1023 119-174 (277)
93 TIGR02461 osmo_MPG_phos mannos 79.5 3.9 8.4E-05 44.1 6.1 36 977-1012 18-54 (225)
94 PLN02779 haloacid dehalogenase 79.4 2.3 4.9E-05 47.4 4.5 88 973-1064 143-233 (286)
95 TIGR01675 plant-AP plant acid 78.8 8.3 0.00018 42.8 8.4 101 905-1025 62-172 (229)
96 TIGR02252 DREG-2 REG-2-like, H 78.4 3.2 7E-05 42.6 4.9 82 973-1060 104-187 (203)
97 PRK13582 thrH phosphoserine ph 78.1 3.3 7.1E-05 42.5 4.9 49 972-1021 66-114 (205)
98 TIGR00099 Cof-subfamily Cof su 77.7 4.4 9.6E-05 43.4 5.9 37 977-1013 19-56 (256)
99 COG2503 Predicted secreted aci 77.7 3.3 7.2E-05 46.7 5.0 28 908-935 67-94 (274)
100 PRK03669 mannosyl-3-phosphogly 77.7 4.7 0.0001 44.0 6.2 58 918-1012 5-63 (271)
101 PRK13478 phosphonoacetaldehyde 77.1 4 8.6E-05 44.4 5.4 87 973-1063 100-189 (267)
102 PRK10513 sugar phosphate phosp 77.0 4.6 9.9E-05 43.5 5.8 70 1132-1203 163-248 (270)
103 TIGR02137 HSK-PSP phosphoserin 76.7 4 8.6E-05 43.6 5.2 50 973-1023 67-116 (203)
104 TIGR01488 HAD-SF-IB Haloacid D 76.6 5.1 0.00011 39.9 5.6 49 973-1022 72-121 (177)
105 TIGR01484 HAD-SF-IIB HAD-super 76.1 4.1 8.9E-05 42.0 4.9 35 976-1010 19-54 (204)
106 PRK10530 pyridoxal phosphate ( 75.7 7.6 0.00016 41.6 7.0 16 920-935 3-18 (272)
107 PRK09552 mtnX 2-hydroxy-3-keto 75.6 3.5 7.6E-05 43.5 4.4 38 973-1010 73-111 (219)
108 TIGR01548 HAD-SF-IA-hyp1 haloa 75.3 4.1 8.9E-05 42.1 4.7 81 974-1060 106-188 (197)
109 TIGR03351 PhnX-like phosphonat 74.7 4.4 9.5E-05 42.2 4.8 84 973-1060 86-173 (220)
110 PRK09456 ?-D-glucose-1-phospha 74.5 2.1 4.5E-05 44.4 2.3 88 971-1062 81-170 (199)
111 PLN02940 riboflavin kinase 74.1 2.6 5.7E-05 49.0 3.3 84 973-1061 92-178 (382)
112 COG2179 Predicted hydrolase of 73.9 6 0.00013 42.5 5.5 115 913-1077 21-141 (175)
113 PF11019 DUF2608: Protein of u 73.5 5.6 0.00012 44.2 5.4 101 919-1020 19-128 (252)
114 PRK01158 phosphoglycolate phos 73.3 8.4 0.00018 40.3 6.5 57 921-1014 4-61 (230)
115 TIGR01486 HAD-SF-IIB-MPGP mann 73.3 6.6 0.00014 42.4 5.8 35 978-1012 20-55 (256)
116 PRK13225 phosphoglycolate phos 73.1 4.5 9.8E-05 45.1 4.7 81 973-1061 141-223 (273)
117 PLN02954 phosphoserine phospha 71.8 7.5 0.00016 40.6 5.7 50 973-1022 83-134 (224)
118 COG0637 Predicted phosphatase/ 71.1 3.1 6.7E-05 44.6 2.8 84 973-1061 85-170 (221)
119 PHA02597 30.2 hypothetical pro 70.9 3.7 8.1E-05 42.2 3.2 95 972-1074 72-171 (197)
120 TIGR01691 enolase-ppase 2,3-di 70.8 5.2 0.00011 43.6 4.4 86 972-1063 93-182 (220)
121 PRK06698 bifunctional 5'-methy 70.1 6.3 0.00014 46.6 5.2 82 973-1061 329-411 (459)
122 TIGR01482 SPP-subfamily Sucros 69.7 9.1 0.0002 39.8 5.7 13 923-935 1-13 (225)
123 PLN02645 phosphoglycolate phos 69.6 9.2 0.0002 43.2 6.1 16 920-935 28-43 (311)
124 TIGR02247 HAD-1A3-hyp Epoxide 69.0 3.1 6.6E-05 43.2 2.1 86 972-1062 92-181 (211)
125 PRK15126 thiamin pyrimidine py 68.6 10 0.00022 41.2 6.0 71 1131-1203 154-240 (272)
126 TIGR01458 HAD-SF-IIA-hyp3 HAD- 68.0 7.3 0.00016 42.8 4.8 14 922-935 3-16 (257)
127 PRK09484 3-deoxy-D-manno-octul 67.8 14 0.00031 38.6 6.6 60 988-1061 63-123 (183)
128 PRK10444 UMP phosphatase; Prov 67.4 9 0.00019 42.2 5.4 14 922-935 3-16 (248)
129 PLN03017 trehalose-phosphatase 66.8 9.6 0.00021 45.0 5.7 63 913-1007 104-166 (366)
130 PRK10187 trehalose-6-phosphate 66.8 8.1 0.00017 42.8 4.9 60 919-1010 13-74 (266)
131 smart00775 LNS2 LNS2 domain. T 66.8 10 0.00023 39.1 5.4 36 975-1010 28-64 (157)
132 TIGR01990 bPGM beta-phosphoglu 66.8 5.4 0.00012 40.0 3.3 82 973-1061 86-169 (185)
133 TIGR01493 HAD-SF-IA-v2 Haloaci 66.5 1.9 4.2E-05 43.1 0.1 77 973-1060 89-166 (175)
134 KOG3109 Haloacid dehalogenase- 64.8 8.1 0.00018 43.2 4.3 84 973-1063 99-191 (244)
135 PRK10976 putative hydrolase; P 64.4 14 0.0003 39.9 6.0 69 1133-1203 158-242 (266)
136 COG4502 5'(3')-deoxyribonucleo 61.9 4.5 9.7E-05 42.7 1.7 30 973-1002 67-96 (180)
137 TIGR01452 PGP_euk phosphoglyco 60.3 14 0.00031 40.8 5.3 15 921-935 3-17 (279)
138 TIGR01490 HAD-SF-IB-hyp1 HAD-s 60.0 14 0.0003 38.0 4.8 49 973-1022 86-135 (202)
139 COG0241 HisB Histidinol phosph 59.6 43 0.00093 36.3 8.5 108 920-1060 5-132 (181)
140 PF09419 PGP_phosphatase: Mito 57.7 15 0.00033 39.0 4.8 83 874-1011 14-106 (168)
141 PLN02919 haloacid dehalogenase 57.2 13 0.00029 48.9 5.1 85 975-1063 162-248 (1057)
142 TIGR01457 HAD-SF-IIA-hyp2 HAD- 57.0 18 0.00039 39.6 5.3 14 922-935 3-16 (249)
143 PLN02811 hydrolase 56.7 10 0.00022 40.1 3.3 86 973-1063 77-170 (220)
144 TIGR01485 SPP_plant-cyano sucr 56.2 18 0.0004 39.0 5.2 15 920-934 1-15 (249)
145 PLN02151 trehalose-phosphatase 55.8 21 0.00045 42.1 5.9 62 914-1007 92-153 (354)
146 COG0647 NagD Predicted sugar p 55.7 16 0.00035 41.5 4.8 18 918-935 6-23 (269)
147 PLN02423 phosphomannomutase 55.7 12 0.00026 40.9 3.8 17 919-935 6-22 (245)
148 TIGR00685 T6PP trehalose-phosp 54.8 8.2 0.00018 41.8 2.3 62 919-1013 2-63 (244)
149 KOG1929 Nucleotide excision re 54.4 11 0.00023 48.6 3.5 72 1131-1207 91-163 (811)
150 PTZ00174 phosphomannomutase; P 53.4 24 0.00051 38.4 5.5 18 919-936 4-21 (247)
151 COG3882 FkbH Predicted enzyme 52.9 7.5 0.00016 47.5 1.7 71 914-1009 216-291 (574)
152 TIGR01680 Veg_Stor_Prot vegeta 50.4 57 0.0012 37.6 8.0 50 976-1025 147-197 (275)
153 TIGR01460 HAD-SF-IIA Haloacid 50.3 18 0.0004 39.1 4.1 13 923-935 1-13 (236)
154 PRK11133 serB phosphoserine ph 50.0 17 0.00037 41.9 4.0 41 973-1013 180-221 (322)
155 TIGR01548 HAD-SF-IA-hyp1 haloa 48.8 9.6 0.00021 39.4 1.6 14 922-935 2-15 (197)
156 PLN02580 trehalose-phosphatase 48.1 30 0.00064 41.3 5.6 63 914-1008 113-175 (384)
157 PLN02887 hydrolase family prot 47.9 29 0.00063 43.3 5.7 63 1139-1203 481-559 (580)
158 PLN03243 haloacid dehalogenase 46.9 14 0.0003 41.0 2.6 23 912-935 17-39 (260)
159 PRK10725 fructose-1-P/6-phosph 46.6 11 0.00024 38.1 1.6 16 920-935 5-20 (188)
160 TIGR02244 HAD-IG-Ncltidse HAD 46.4 29 0.00064 40.7 5.1 53 970-1023 180-240 (343)
161 KOG1929 Nucleotide excision re 46.0 15 0.00033 47.3 3.0 61 1142-1207 8-68 (811)
162 PTZ00445 p36-lilke protein; Pr 45.3 31 0.00068 38.5 4.8 64 915-1002 38-104 (219)
163 KOG3524 Predicted guanine nucl 45.2 7.9 0.00017 48.8 0.4 53 1143-1201 118-170 (850)
164 COG0560 SerB Phosphoserine pho 44.8 40 0.00086 36.6 5.5 50 972-1022 75-125 (212)
165 PRK12702 mannosyl-3-phosphogly 44.1 46 0.001 38.7 6.1 15 921-935 2-16 (302)
166 PHA02597 30.2 hypothetical pro 43.8 13 0.00029 38.2 1.7 15 921-935 3-17 (197)
167 PRK11587 putative phosphatase; 42.7 13 0.00028 39.2 1.5 15 921-935 4-18 (218)
168 PRK14502 bifunctional mannosyl 41.9 48 0.001 42.4 6.3 58 918-1012 414-472 (694)
169 TIGR01993 Pyr-5-nucltdase pyri 41.7 13 0.00029 37.8 1.3 14 922-935 2-15 (184)
170 PF03767 Acid_phosphat_B: HAD 41.7 27 0.00058 38.3 3.7 78 917-1014 69-156 (229)
171 TIGR02253 CTE7 HAD superfamily 41.0 15 0.00032 38.2 1.6 16 921-936 3-18 (221)
172 TIGR03351 PhnX-like phosphonat 40.9 16 0.00035 38.1 1.8 15 921-935 2-16 (220)
173 PRK13288 pyrophosphatase PpaX; 40.6 15 0.00033 38.3 1.6 17 920-936 3-19 (214)
174 PRK11590 hypothetical protein; 40.4 16 0.00035 38.7 1.7 39 973-1011 94-134 (211)
175 PF00702 Hydrolase: haloacid d 40.2 60 0.0013 33.0 5.7 42 971-1012 124-166 (215)
176 COG4359 Uncharacterized conser 39.6 56 0.0012 36.2 5.6 39 973-1011 72-111 (220)
177 PRK13223 phosphoglycolate phos 39.2 15 0.00033 40.7 1.4 16 920-935 13-28 (272)
178 TIGR02252 DREG-2 REG-2-like, H 37.8 19 0.00042 37.1 1.8 39 1161-1207 160-199 (203)
179 COG0546 Gph Predicted phosphat 37.4 69 0.0015 34.2 5.9 81 973-1061 88-173 (220)
180 PRK11590 hypothetical protein; 36.7 46 0.001 35.3 4.4 17 919-935 5-21 (211)
181 TIGR01549 HAD-SF-IA-v1 haloaci 36.1 15 0.00033 36.1 0.7 14 922-935 1-14 (154)
182 TIGR02009 PGMB-YQAB-SF beta-ph 35.9 18 0.00039 36.4 1.2 15 921-935 2-16 (185)
183 PF12710 HAD: haloacid dehalog 35.7 33 0.00072 34.5 3.0 47 975-1021 86-138 (192)
184 PRK13226 phosphoglycolate phos 35.6 18 0.00039 38.6 1.2 15 921-935 13-27 (229)
185 PF13419 HAD_2: Haloacid dehal 35.6 19 0.00041 34.8 1.2 13 923-935 1-13 (176)
186 TIGR00338 serB phosphoserine p 35.5 21 0.00044 37.3 1.6 17 919-935 13-29 (219)
187 TIGR01511 ATPase-IB1_Cu copper 35.0 68 0.0015 39.5 6.1 40 973-1012 404-444 (562)
188 PRK13478 phosphonoacetaldehyde 34.9 22 0.00047 38.8 1.7 15 921-935 5-19 (267)
189 COG1877 OtsB Trehalose-6-phosp 34.6 93 0.002 35.6 6.6 64 913-1008 11-76 (266)
190 TIGR01990 bPGM beta-phosphoglu 34.3 18 0.00039 36.3 1.0 14 922-935 1-14 (185)
191 PLN02770 haloacid dehalogenase 33.7 20 0.00043 38.9 1.2 15 921-935 23-37 (248)
192 TIGR01422 phosphonatase phosph 33.5 25 0.00053 37.9 1.8 15 921-935 3-17 (253)
193 TIGR01509 HAD-SF-IA-v3 haloaci 33.5 21 0.00044 35.6 1.2 14 922-935 1-14 (183)
194 TIGR01489 DKMTPPase-SF 2,3-dik 33.5 24 0.00052 35.4 1.6 16 920-935 1-16 (188)
195 TIGR01454 AHBA_synth_RP 3-amin 32.8 17 0.00037 37.7 0.5 13 923-935 1-13 (205)
196 TIGR01545 YfhB_g-proteo haloac 31.6 62 0.0013 34.9 4.4 37 973-1009 93-131 (210)
197 TIGR02254 YjjG/YfnB HAD superf 31.2 24 0.00053 36.4 1.3 15 921-935 2-16 (224)
198 PRK13225 phosphoglycolate phos 31.2 23 0.00049 39.7 1.1 16 920-935 62-77 (273)
199 TIGR01428 HAD_type_II 2-haloal 31.0 24 0.00053 36.3 1.3 14 922-935 3-16 (198)
200 TIGR01449 PGP_bact 2-phosphogl 30.9 19 0.00042 37.1 0.5 13 923-935 1-13 (213)
201 COG0546 Gph Predicted phosphat 30.8 28 0.00061 37.1 1.7 18 919-936 3-20 (220)
202 KOG3120 Predicted haloacid deh 30.3 83 0.0018 35.8 5.2 48 973-1022 83-132 (256)
203 PLN02382 probable sucrose-phos 30.3 27 0.00059 41.5 1.7 21 914-934 3-23 (413)
204 PRK13222 phosphoglycolate phos 30.3 26 0.00056 36.4 1.3 15 921-935 7-21 (226)
205 TIGR02247 HAD-1A3-hyp Epoxide 30.1 31 0.00068 35.8 1.9 14 922-935 4-17 (211)
206 PRK10748 flavin mononucleotide 30.0 25 0.00054 37.9 1.2 83 973-1065 112-197 (238)
207 PF04147 Nop14: Nop14-like fam 29.4 27 0.00059 45.2 1.6 68 188-268 415-482 (840)
208 PRK05601 DNA polymerase III su 29.3 64 0.0014 38.6 4.4 61 1143-1208 294-356 (377)
209 TIGR01491 HAD-SF-IB-PSPlk HAD- 29.1 34 0.00074 34.8 1.9 15 921-935 5-19 (201)
210 PRK10826 2-deoxyglucose-6-phos 28.8 30 0.00066 36.4 1.6 17 919-935 6-22 (222)
211 TIGR01493 HAD-SF-IA-v2 Haloaci 28.7 26 0.00057 35.1 1.0 13 923-935 2-14 (175)
212 PRK09449 dUMP phosphatase; Pro 27.6 28 0.00062 36.4 1.1 14 921-934 4-17 (224)
213 KOG0966 ATP-dependent DNA liga 27.3 1.1E+02 0.0023 40.0 6.0 61 1141-1205 631-694 (881)
214 PRK14988 GMP/IMP nucleotidase; 26.9 34 0.00073 36.8 1.5 16 920-935 10-25 (224)
215 PLN02779 haloacid dehalogenase 26.2 40 0.00086 37.8 2.0 17 919-935 39-55 (286)
216 PRK14501 putative bifunctional 26.1 91 0.002 39.5 5.2 61 917-1009 489-551 (726)
217 PRK10748 flavin mononucleotide 25.1 53 0.0011 35.4 2.6 15 921-935 11-25 (238)
218 PRK10563 6-phosphogluconate ph 23.1 42 0.00092 35.1 1.4 16 920-935 4-19 (221)
219 TIGR01525 ATPase-IB_hvy heavy 22.0 1.1E+02 0.0024 37.5 4.8 41 973-1013 383-425 (556)
220 PRK13582 thrH phosphoserine ph 21.7 49 0.0011 34.1 1.5 12 922-933 3-14 (205)
221 PRK06698 bifunctional 5'-methy 21.3 42 0.00092 39.9 1.0 16 921-936 242-257 (459)
222 PF06888 Put_Phosphatase: Puta 21.0 1.4E+02 0.0031 33.4 4.9 49 973-1023 70-121 (234)
223 TIGR02471 sucr_syn_bact_C sucr 20.3 46 0.001 35.6 1.0 13 923-935 2-14 (236)
224 PF05116 S6PP: Sucrose-6F-phos 20.2 56 0.0012 36.0 1.6 32 978-1009 23-55 (247)
225 PLN02954 phosphoserine phospha 20.2 56 0.0012 34.3 1.5 17 919-935 11-27 (224)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=2.3e-46 Score=436.25 Aligned_cols=310 Identities=37% Similarity=0.554 Sum_probs=248.3
Q ss_pred cccccchhccCCchHHHHHHhHHHHhhHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcc
Q 000959 882 AWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHR 961 (1208)
Q Consensus 882 ~~~~f~~L~~Gy~~~q~a~I~ke~arrLe~q~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~ 961 (1208)
..+.|.++..+....+... ...+++..+..++...+|+||+|||+||+|+.....+.... .+... +......+.
T Consensus 111 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~--~~l~~-~~~~~~sn~ 184 (635)
T KOG0323|consen 111 QGRSFDYLVKGLQLSNEMV---AFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETE--KYLKE-EAESVESNK 184 (635)
T ss_pred hccchhcccchhhhhhhhh---hhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhh--hhccc-ccccccccc
Confidence 3455677777766555533 36677777788888889999999999999998654333221 11111 101000123
Q ss_pred eeeeec----cceEEEEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCC
Q 000959 962 HLFRFP----HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERV 1037 (1208)
Q Consensus 962 ~lFrlp----~~~~yVKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~ 1037 (1208)
.+|++. ...||||+|||+.+||++++++|||||||||++.||..|+++|||+|.||++|||+|+++..
T Consensus 185 dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~~-------- 256 (635)
T KOG0323|consen 185 DLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESPF-------- 256 (635)
T ss_pred cceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCCc--------
Confidence 344443 25689999999999999999999999999999999999999999999999999999997432
Q ss_pred CccccCCCccCCC-CcEEEEcCCCcccccCCCCeEEeccccccCccccccC-----------------------------
Q 000959 1038 PKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFG----------------------------- 1087 (1208)
Q Consensus 1038 ~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdNlI~IkpY~YF~~s~rQfG----------------------------- 1087 (1208)
...+||..++.++ ++|||||||.+||.+++.|+|.|.+|.||.+.++.+.
T Consensus 257 ~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~ 336 (635)
T KOG0323|consen 257 FKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSR 336 (635)
T ss_pred ccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccccccccCcccccc
Confidence 4578888777776 8999999999999999889999999999998664432
Q ss_pred --------------------------------------------CCCCCcccccccCCccchhhhHHHHHHHHHHHhhhc
Q 000959 1088 --------------------------------------------LLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFS 1123 (1208)
Q Consensus 1088 --------------------------------------------lpgPSLlEid~DEdpeDg~L~sLL~~LerIHq~FF~ 1123 (1208)
....++.+...|+.+.|++|++++++|+.||..||.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~ 416 (635)
T KOG0323|consen 337 ISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFA 416 (635)
T ss_pred cccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhhcccchhhhh
Confidence 123344555677888899999999999999999999
Q ss_pred CC-----CCCCCCHHHHHHHHHHhhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHH
Q 000959 1124 HQ-----SLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDK 1198 (1208)
Q Consensus 1124 ~~-----dL~~~DVR~ILreiRrkVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeK 1198 (1208)
.. .....|||.+|+++|.++|+||.++|||++|.+... ....+...+.+|||+..++++..+||+|+.+.||.|
T Consensus 417 ~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~-~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k 495 (635)
T KOG0323|consen 417 KYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTD-ESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKK 495 (635)
T ss_pred ccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCc-chhhhhhhhhcccceecccccchhhhHHhhccCcce
Confidence 75 345789999999999999999999999999998642 335666679999999999999999999999999999
Q ss_pred HHHHHHhc
Q 000959 1199 VLLVVFSL 1206 (1208)
Q Consensus 1199 Vr~A~~~g 1206 (1208)
+.+|...+
T Consensus 496 ~~~a~~~~ 503 (635)
T KOG0323|consen 496 VYKAVVSG 503 (635)
T ss_pred eecccccc
Confidence 99987654
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=8.7e-35 Score=290.65 Aligned_cols=155 Identities=43% Similarity=0.704 Sum_probs=128.2
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEEE
Q 000959 915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 994 (1208)
Q Consensus 915 LLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIVI 994 (1208)
|+.++||+||||||||||||+....... .+.+...+......+....|.+....+|+++|||+.+||++|++.|||+|
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I 78 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSE--WEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHV 78 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccch--hhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEE
Confidence 5789999999999999999986443221 11111111111112344667777788999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCcccccCCCCeEEe
Q 000959 995 YTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVV 1073 (1208)
Q Consensus 995 YTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdNlI~I 1073 (1208)
||++.+.||++|++.|||.+.+|++||++|++|. | .++|||++++|++ ++||||||++++|..|++|+|+|
T Consensus 79 ~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~----~----~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i 150 (156)
T TIGR02250 79 YTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG----S----PHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQI 150 (156)
T ss_pred EeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC----C----CccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEe
Confidence 9999999999999999999999999999998774 2 5789998799988 89999999999999999999999
Q ss_pred cccccc
Q 000959 1074 ERYTYF 1079 (1208)
Q Consensus 1074 kpY~YF 1079 (1208)
+||.||
T Consensus 151 ~~~~~f 156 (156)
T TIGR02250 151 EPYNYF 156 (156)
T ss_pred CCcccC
Confidence 999998
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.97 E-value=1.4e-32 Score=295.51 Aligned_cols=174 Identities=30% Similarity=0.396 Sum_probs=144.1
Q ss_pred hhhcCCCeEEEEeCCCceeeccc-CCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEE
Q 000959 914 KMFSARKLCLVLDLDHTLLNSAK-FHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 992 (1208)
Q Consensus 914 rLLs~rKLTLVLDLDETLIHSt~-~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEI 992 (1208)
++...+|+|||||||||||||+. ++...+ .++.+. ..+......+||.+|||+++||++++++||+
T Consensus 83 ~~~~~~kk~lVLDLDeTLvHss~~~~~~~~-~d~~~~------------v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~ 149 (262)
T KOG1605|consen 83 RLATVGRKTLVLDLDETLVHSSLNLKPIVN-ADFTVP------------VEIDGHIHQVYVRKRPHVDEFLSRVSKWYEL 149 (262)
T ss_pred ccccCCCceEEEeCCCcccccccccCCCCC-cceeee------------eeeCCcceEEEEEcCCCHHHHHHHhHHHHHH
Confidence 44578999999999999999984 321111 111111 1111113578999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCcccccCCCCeE
Q 000959 993 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLI 1071 (1208)
Q Consensus 993 VIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdNlI 1071 (1208)
+|||++.+.||++|+++|||.+++|.+|+| |++|+ ..+| .|+|||. ++|++ ++||||||+|.+|..||+|+|
T Consensus 150 v~FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C~-~~~g----~yvKdls-~~~~dL~~viIiDNsP~sy~~~p~NgI 222 (262)
T KOG1605|consen 150 VLFTASLEVYADPLLDILDPDRKIISHRLY-RDSCT-LKDG----NYVKDLS-VLGRDLSKVIIVDNSPQSYRLQPENGI 222 (262)
T ss_pred HHHHhhhHHHHHHHHHHccCCCCeeeeeec-ccceE-eECC----cEEEEcc-eeccCcccEEEEcCChHHhccCccCCC
Confidence 999999999999999999998889999988 77664 5676 6999998 68888 899999999999999999999
Q ss_pred EeccccccCccccccCCCCCCcccccccCCccchhhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHH
Q 000959 1072 VVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138 (1208)
Q Consensus 1072 ~IkpY~YF~~s~rQfGlpgPSLlEid~DEdpeDg~L~sLL~~LerIHq~FF~~~dL~~~DVR~ILre 1138 (1208)
+|++|.. ++.|.+|+.+++||+.|.. ..|||++|+.
T Consensus 223 pI~sw~~----------------------d~~D~eLL~LlpfLe~L~~---------~~Dvr~~l~~ 258 (262)
T KOG1605|consen 223 PIKSWFD----------------------DPTDTELLKLLPFLEALAF---------VDDVRPILAR 258 (262)
T ss_pred ccccccc----------------------CCChHHHHHHHHHHHHhcc---------cccHHHHHHH
Confidence 9999962 5789999999999999973 5799999975
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.96 E-value=1.8e-29 Score=252.35 Aligned_cols=158 Identities=28% Similarity=0.341 Sum_probs=127.5
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEEEEcCCc
Q 000959 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGN 999 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIVIYTAGt 999 (1208)
|++||||||||||||+..+ ... .. +.+....++.....+||++|||+.+||++|+++|||+|||++.
T Consensus 1 k~~lvlDLDeTLi~~~~~~-~~~-~~-----------~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~ 67 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKM-PKV-DA-----------DFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASL 67 (162)
T ss_pred CcEEEEcCCCCcCCCCCCC-CCC-CC-----------ceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCc
Confidence 6899999999999997421 100 00 0000001111245799999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCcccccCCCCeEEeccccc
Q 000959 1000 KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTY 1078 (1208)
Q Consensus 1000 reYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdNlI~IkpY~Y 1078 (1208)
+.||++|++.|||.+.+|.++++ |++|.. ..| .+.|||+ .+|++ +++|||||++..|..++.|+|+|.+|.+
T Consensus 68 ~~yA~~il~~ldp~~~~f~~~l~-r~~~~~-~~~----~~~K~L~-~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 68 EEYADPVLDILDRGGKVISRRLY-RESCVF-TNG----KYVKDLS-LVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred HHHHHHHHHHHCcCCCEEeEEEE-ccccEE-eCC----CEEeEch-hcCCChhhEEEEeCChhhhccCccCEeecCCCCC
Confidence 99999999999999889998766 776642 233 4899999 58998 8999999999999999999999999973
Q ss_pred cCccccccCCCCCCcccccccCCccchhhhHHHHHHHHHHH
Q 000959 1079 FPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHK 1119 (1208)
Q Consensus 1079 F~~s~rQfGlpgPSLlEid~DEdpeDg~L~sLL~~LerIHq 1119 (1208)
+.+|.+|..++++|+.|..
T Consensus 141 ----------------------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 141 ----------------------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred ----------------------CCCHHHHHHHHHHHHHHhc
Confidence 4678999999999999975
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.96 E-value=5.6e-29 Score=243.37 Aligned_cols=157 Identities=39% Similarity=0.533 Sum_probs=112.8
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEEEEcCCcH
Q 000959 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNK 1000 (1208)
Q Consensus 921 LTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIVIYTAGtr 1000 (1208)
++|||||||||||+...... +. + ..... ....++|++|||+++||++++++|||+|||++++
T Consensus 1 k~LVlDLD~TLv~~~~~~~~-~~-----------~-----~~~~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~ 62 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL-PY-----------D-----FKIID-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASE 62 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT-T------------S-----EEEET-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-H
T ss_pred CEEEEeCCCcEEEEeecCCC-Cc-----------c-----cceec-cccceeEeeCchHHHHHHHHHHhceEEEEEeehh
Confidence 68999999999999853211 00 0 00001 2356899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCcccccCCCCeEEecccccc
Q 000959 1001 LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYF 1079 (1208)
Q Consensus 1001 eYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdNlI~IkpY~YF 1079 (1208)
.||.+|++.|||++.+|.+++ +|++|. ...| .+.|||+. +|++ ++||||||++.+|..++.|+|+|++|..
T Consensus 63 ~ya~~v~~~ldp~~~~~~~~~-~r~~~~-~~~~----~~~KdL~~-l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~- 134 (159)
T PF03031_consen 63 EYAEPVLDALDPNGKLFSRRL-YRDDCT-FDKG----SYIKDLSK-LGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFG- 134 (159)
T ss_dssp HHHHHHHHHHTTTTSSEEEEE-EGGGSE-EETT----EEE--GGG-SSS-GGGEEEEES-GGGGTTSGGGEEE----SS-
T ss_pred hhhhHHHHhhhhhcccccccc-cccccc-cccc----ccccchHH-HhhccccEEEEeCCHHHeeccCCceEEeccccC-
Confidence 999999999999988998765 577664 2222 45899994 6887 8999999999999999999999999862
Q ss_pred CccccccCCCCCCcccccccCC-ccchhhhHHHHHHHHHHHhhhcCCCCCCCCHH
Q 000959 1080 PCSRRQFGLLGPSLLEIDHDER-SEDGTLASSLGVIERLHKIFFSHQSLDDVDVR 1133 (1208)
Q Consensus 1080 ~~s~rQfGlpgPSLlEid~DEd-peDg~L~sLL~~LerIHq~FF~~~dL~~~DVR 1133 (1208)
. +.|.+|..++++|+.|++ ..|||
T Consensus 135 ---------------------~~~~D~~L~~l~~~L~~l~~---------~~Dvr 159 (159)
T PF03031_consen 135 ---------------------DTPNDRELLRLLPFLEELAK---------EDDVR 159 (159)
T ss_dssp ---------------------CHTT--HHHHHHHHHHHHHT---------HS-CH
T ss_pred ---------------------CCcchhHHHHHHHHHHHhCc---------ccCCC
Confidence 2 678999999999999984 46776
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.93 E-value=4.8e-26 Score=236.42 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=127.1
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEEE
Q 000959 915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 994 (1208)
Q Consensus 915 LLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIVI 994 (1208)
....+|++|||||||||||+.. +. ...|+.+|||+++||+.++++|||+|
T Consensus 16 ~~~~~kklLVLDLDeTLvh~~~-----~~-------------------------~~~~~~kRP~l~eFL~~~~~~feIvV 65 (195)
T TIGR02245 16 PPREGKKLLVLDIDYTLFDHRS-----PA-------------------------ETGEELMRPYLHEFLTSAYEDYDIVI 65 (195)
T ss_pred CCCCCCcEEEEeCCCceEcccc-----cC-------------------------CCceEEeCCCHHHHHHHHHhCCEEEE
Confidence 3467899999999999999742 10 02478899999999999999999999
Q ss_pred EcCCcHHHHHHHHHHhcCCC-ceeeeeEEecCCCCCC-C-CCCCCCCccccCCCc---cCC--C-CcEEEEcCCCccccc
Q 000959 995 YTMGNKLYATEMAKVLDPKG-VLFAGRVISRGDDGDP-F-DGDERVPKSKDLEGV---LGM--E-SAVVIIDDSVRVWPH 1065 (1208)
Q Consensus 995 YTAGtreYAd~VLdiLDP~g-kLFs~RIiSRDDc~~~-f-dG~er~~yvKDLsrV---LGr--D-srVVIIDDrpdVW~~ 1065 (1208)
||++...||+.+++.|++.+ ..|.-+++ ++.|+.. + .-.....++|||+.+ +|+ + +.+|||||++.++..
T Consensus 66 wTAa~~~ya~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~ 144 (195)
T TIGR02245 66 WSATSMKWIEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLM 144 (195)
T ss_pred EecCCHHHHHHHHHHhcccCCccceEEEE-eccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhc
Confidence 99999999999999997643 22333343 4655311 0 000111358999965 343 4 799999999999999
Q ss_pred CCCCeEEeccccccCccccccCCCCCCcccccccCCccchhhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHH
Q 000959 1066 NKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138 (1208)
Q Consensus 1066 qpdNlI~IkpY~YF~~s~rQfGlpgPSLlEid~DEdpeDg~L~sLL~~LerIHq~FF~~~dL~~~DVR~ILre 1138 (1208)
||.|+|+|++|.+- ..+++.|.+|..++++|+.|+. ..|||.++..
T Consensus 145 ~P~N~i~I~~f~~~------------------~~~~~~D~eL~~L~~yL~~la~---------~~Dvr~~~~~ 190 (195)
T TIGR02245 145 NPQNGLKIRPFKKA------------------HANRGTDQELLKLTQYLKTIAE---------LEDFSSLDHK 190 (195)
T ss_pred CCCCccccCCcccc------------------CCCCcccHHHHHHHHHHHHHhc---------Ccccchhhhc
Confidence 99999999999631 1125789999999999999985 7899999863
No 7
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.86 E-value=1.1e-21 Score=217.38 Aligned_cols=158 Identities=25% Similarity=0.402 Sum_probs=139.4
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEEEEc
Q 000959 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYT 996 (1208)
Q Consensus 917 s~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIVIYT 996 (1208)
.+.++||||||.++|||..+. + ..++.+++|||++.||..++++|||+|||
T Consensus 186 ~Qp~yTLVleledvLVhpdws--------------------------~---~tGwRf~kRPgvD~FL~~~a~~yEIVi~s 236 (393)
T KOG2832|consen 186 EQPPYTLVLELEDVLVHPDWS--------------------------Y---KTGWRFKKRPGVDYFLGHLAKYYEIVVYS 236 (393)
T ss_pred cCCCceEEEEeeeeEeccchh--------------------------h---hcCceeccCchHHHHHHhhcccceEEEEe
Confidence 568999999999999998651 0 03577999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCcccccCCCCeEEecc
Q 000959 997 MGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVER 1075 (1208)
Q Consensus 997 AGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdNlI~Ikp 1075 (1208)
.....||.+|++.|||.| ++++|+| |+ |+...+| +++|||+ -|+|| ++||+||-.+..+..||+|.|.++|
T Consensus 237 se~gmt~~pl~d~lDP~g-~IsYkLf-r~-~t~y~~G----~HvKdls-~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~ 308 (393)
T KOG2832|consen 237 SEQGMTVFPLLDALDPKG-YISYKLF-RG-ATKYEEG----HHVKDLS-KLNRDLQKVIVVDFDANSYKLQPENMLPLEP 308 (393)
T ss_pred cCCccchhhhHhhcCCcc-eEEEEEe-cC-cccccCc----cchhhhh-hhccccceeEEEEccccccccCcccccccCc
Confidence 999999999999999997 7899998 66 4566777 7899999 58999 9999999999999999999999999
Q ss_pred ccccCccccccCCCCCCcccccccCCccchhhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHH
Q 000959 1076 YTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQ 1140 (1208)
Q Consensus 1076 Y~YF~~s~rQfGlpgPSLlEid~DEdpeDg~L~sLL~~LerIHq~FF~~~dL~~~DVR~ILreiR 1140 (1208)
|.. +++|..|..|++||+.||+ .+..|||+||+...
T Consensus 309 W~G----------------------n~dDt~L~dL~~FL~~ia~-------~~~eDvR~vL~~y~ 344 (393)
T KOG2832|consen 309 WSG----------------------NDDDTSLFDLLAFLEYIAQ-------QQVEDVRPVLQSYS 344 (393)
T ss_pred CCC----------------------CcccchhhhHHHHHHHHHH-------ccHHHHHHHHHHhc
Confidence 972 5778899999999999996 34789999998753
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.85 E-value=9.7e-21 Score=186.07 Aligned_cols=144 Identities=38% Similarity=0.508 Sum_probs=112.0
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEEEEcCC
Q 000959 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 998 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIVIYTAG 998 (1208)
||++|||||||||||+...+.. + +. ....+-...+......+++++|||+.+||++|.+.|+|+|||++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-~----~~------~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~ 69 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-E----WT------NRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAG 69 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-C----CC------ccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCC
Confidence 6999999999999999641111 1 10 00111112222334578899999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCcccccCCCCeEEecccc
Q 000959 999 NKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYT 1077 (1208)
Q Consensus 999 treYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdNlI~IkpY~ 1077 (1208)
.+.||+.+++.||+.+.+| ++|+++++|.. .++ .+.|+|+ .+|++ +.+|+|||++..|..++.|+|.|++|.
T Consensus 70 ~~~~~~~il~~l~~~~~~f-~~i~~~~d~~~-~KP----~~~k~l~-~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~ 142 (148)
T smart00577 70 LRMYADPVLDLLDPKKYFG-YRRLFRDECVF-VKG----KYVKDLS-LLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWF 142 (148)
T ss_pred cHHHHHHHHHHhCcCCCEe-eeEEECccccc-cCC----eEeecHH-HcCCChhcEEEEECCHHHhhcCccCEEEecCcC
Confidence 9999999999999976455 46888887642 232 3889998 57887 899999999999999999999999999
Q ss_pred ccC
Q 000959 1078 YFP 1080 (1208)
Q Consensus 1078 YF~ 1080 (1208)
++.
T Consensus 143 ~~~ 145 (148)
T smart00577 143 GDP 145 (148)
T ss_pred CCC
Confidence 765
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.77 E-value=5.1e-19 Score=199.48 Aligned_cols=177 Identities=28% Similarity=0.348 Sum_probs=140.1
Q ss_pred HHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhccc
Q 000959 911 EQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLF 990 (1208)
Q Consensus 911 ~q~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklY 990 (1208)
.+...-...|.+|++|||+||+||.... ....+++.. .........+||..||++++||..++++|
T Consensus 203 ~~~~~~~~~~k~L~l~lde~l~~S~~~~---~~~~df~~~-----------~e~~~~~~~~~v~kRp~l~~fl~~ls~~~ 268 (390)
T COG5190 203 PPVSKSTSPKKTLVLDLDETLVHSSFRY---ITLLDFLVK-----------VEISLLQHLVYVSKRPELDYFLGKLSKIH 268 (390)
T ss_pred chhhcCCCCccccccCCCccceeecccc---ccccchhhc-----------cccccceeEEEEcCChHHHHHHhhhhhhE
Confidence 3333345789999999999999998521 111111111 01111125789999999999999999999
Q ss_pred EEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCcccccCCCC
Q 000959 991 EMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLN 1069 (1208)
Q Consensus 991 EIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpdVW~~qpdN 1069 (1208)
++++||++.+.||++|+++||+.+ .|++|+| |..|. ...| .|+|||. .++++ ..++|||+++..|..++.|
T Consensus 269 ~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lf-r~sc~-~~~G----~~ikDis-~i~r~l~~viiId~~p~SY~~~p~~ 340 (390)
T COG5190 269 ELVYFTASVKRYADPVLDILDSDK-VFSHRLF-RESCV-SYLG----VYIKDIS-KIGRSLDKVIIIDNSPASYEFHPEN 340 (390)
T ss_pred EEEEEecchhhhcchHHHhccccc-eeehhhh-cccce-eccC----chhhhHH-hhccCCCceEEeeCChhhhhhCccc
Confidence 999999999999999999999999 8999988 55454 4666 5899998 57888 8999999999999999999
Q ss_pred eEEeccccccCccccccCCCCCCcccccccCCccchhhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHH
Q 000959 1070 LIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 1138 (1208)
Q Consensus 1070 lI~IkpY~YF~~s~rQfGlpgPSLlEid~DEdpeDg~L~sLL~~LerIHq~FF~~~dL~~~DVR~ILre 1138 (1208)
+|+|++|.. ++.|..|..+|++|+.|-. -+..||+.+|..
T Consensus 341 ~i~i~~W~~----------------------d~~d~el~~ll~~le~L~~-------~~~~d~~~~l~~ 380 (390)
T COG5190 341 AIPIEKWIS----------------------DEHDDELLNLLPFLEDLPD-------RDLKDVSSILQS 380 (390)
T ss_pred eeccCcccc----------------------cccchhhhhhccccccccc-------ccchhhhhhhhh
Confidence 999999973 4678899999999988863 246789888764
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.51 E-value=2.3e-14 Score=162.26 Aligned_cols=258 Identities=26% Similarity=0.433 Sum_probs=175.6
Q ss_pred HhhhcCCCeEEEEeCCCceeecccCCCCCCchh-hhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccE
Q 000959 913 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHD-EILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE 991 (1208)
Q Consensus 913 ~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~-Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYE 991 (1208)
..|-..+++.||+|||+|.+||.... .+|... +.+ +..........+-.....+++|+||++..|+...++.||
T Consensus 19 ~~l~q~~~~~l~~~~~~~~~h~~~~~-~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e 93 (390)
T COG5190 19 EALRQDKKLILVVDLDQTIIHTTVDP-NDPNNVNQSL----ERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYE 93 (390)
T ss_pred HHhhcCcccccccccccceecccccC-CCCCchhhhh----hccccchhccccccccccceeeecccccchhhhhchhcc
Confidence 45567899999999999999998533 233211 000 000000000111122357899999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCccc---ccCC
Q 000959 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVW---PHNK 1067 (1208)
Q Consensus 992 IVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpdVW---~~qp 1067 (1208)
+++||+|++.||..+++++||.|++|.+|+..++.... ...|.++++++.+ ..+||+||++++| ..+
T Consensus 94 ~~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~--------~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~- 164 (390)
T COG5190 94 LHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGS--------LSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN- 164 (390)
T ss_pred eeeEeeccccchhhhhhccccccccccccccccccccc--------chhhhhhhcCccccccccccccccccCCccchh-
Confidence 99999999999999999999999999999998876432 4578899889988 8999999999999 443
Q ss_pred CCeEEeccccccCccc----------cccCCCC------C---------Ccc-c-------------------ccccCC-
Q 000959 1068 LNLIVVERYTYFPCSR----------RQFGLLG------P---------SLL-E-------------------IDHDER- 1101 (1208)
Q Consensus 1068 dNlI~IkpY~YF~~s~----------rQfGlpg------P---------SLl-E-------------------id~DEd- 1101 (1208)
.|++...++.++.... +.+...+ + -+. + ...+.+
T Consensus 165 ~~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~ 244 (390)
T COG5190 165 SNFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISL 244 (390)
T ss_pred hhhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhcccccc
Confidence 6888888854443211 1111101 0 000 0 001111
Q ss_pred -------ccchhhhHHHHHHHHHHHhhhcCCCC--CCCCHHHHHHHHHHhhhcCceEEeeeeccCCCCCCCCchHHHHHH
Q 000959 1102 -------SEDGTLASSLGVIERLHKIFFSHQSL--DDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAE 1172 (1208)
Q Consensus 1102 -------peDg~L~sLL~~LerIHq~FF~~~dL--~~~DVR~ILreiRrkVL~GC~IVFSGVfPlg~anPe~h~LWrLAE 1172 (1208)
..+.+|..++..|.++|.-+|...+. ....|..+|...+ ++++|.+.|+++++.|.. .-.|-++.
T Consensus 245 ~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~~---ikDis~i~- 318 (390)
T COG5190 245 LQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGVY---IKDISKIG- 318 (390)
T ss_pred ceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCch---hhhHHhhc-
Confidence 23567888889999999887765321 2345888998887 999999999999998851 11222222
Q ss_pred hcCCEEecccCCCccEEEeCCCCcHHH
Q 000959 1173 QFGAVCTKHIDDQVTHVVANSLGTDKV 1199 (1208)
Q Consensus 1173 sFGAtct~sId~~VTHVVAa~~GTeKV 1199 (1208)
..=.-||+|+.++-+.+.
T Consensus 319 ---------r~l~~viiId~~p~SY~~ 336 (390)
T COG5190 319 ---------RSLDKVIIIDNSPASYEF 336 (390)
T ss_pred ---------cCCCceEEeeCChhhhhh
Confidence 333568999888766643
No 11
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.06 E-value=1.1e-11 Score=147.40 Aligned_cols=578 Identities=22% Similarity=0.194 Sum_probs=329.2
Q ss_pred cccccccccccccccccccc----------ccccchhhh------Hhhhhhh-hHHHHHHHHhhhh--cccchhHHhhhh
Q 000959 139 IEKEEGELEEGEIELDLESE----------SNEKVSEQV------KEEMKLI-NVESIREALESVL--RGDISFEGVCSK 199 (1208)
Q Consensus 139 ~ekeegeleegeid~d~~~~----------~~~~~~~~~------~e~~~~~-~~~~i~~~le~v~--~~~~sf~~~c~~ 199 (1208)
..++.+.+.+|.++.-.++. +.+...... +.+++.. .|..+++++.+.+ +...-|.|.|..
T Consensus 23 ~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~v~~~~~~~~~~~~C~H~~v~~GlC~~ 102 (635)
T KOG0323|consen 23 DLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLGRDLEKKVALISGVSSSTSCCEHFTVFGGLCAS 102 (635)
T ss_pred chhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccccchhhhhccccccccccCCccceeecccHHHH
Confidence 37889999999987743311 111111111 1135555 6667777777644 777899999999
Q ss_pred HHHHHHHHHHhhcCCCCcchhHHHHHHHhhhhheeeeeeccChhhhhhhHHHHHHHHHhhhccCCCCCChhHHHHHHHHh
Q 000959 200 LEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAML 279 (1208)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~d~lv~~~f~~~~~~~~v~~s~~~~~~e~nk~~~~rl~~~~~~~~~~~~~~~~~~e~~~~~ 279 (1208)
.-..|+++..... .+-.....|++..+..++++++.||+|++.. |.++..+...++...+...|..+.
T Consensus 103 Cg~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~Dld~tllh~~~~~~l~e~~ 170 (635)
T KOG0323|consen 103 CGKDLESLQGRSF-DYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVLDLDHTLLHTILKSDLSETE 170 (635)
T ss_pred HHHHHHHhhccch-hcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeehhhhhHHHHhhccchhhhhh
Confidence 9888887655544 4447888999999999999999999998766 222222211222222222232222
Q ss_pred hhhhhcccchhhhhhhhccccCCCCCccccccccccccccCCCCCccccccCCCccCCCCCCCCccccccccccCCCCCc
Q 000959 280 SSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKV 359 (1208)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~r~~~~plldlh~~ 359 (1208)
..+.... . .++...+.+.-++. .+++.-..|-|--+.++|..|+
T Consensus 171 ~~l~~~~----------------------~----------~~~sn~dl~~~~~~---~~~~~~~vKlRP~~~efL~~~s- 214 (635)
T KOG0323|consen 171 KYLKEEA----------------------E----------SVESNKDLFRFNPL---GHDTEYLVKLRPFVHEFLKEAN- 214 (635)
T ss_pred hhccccc----------------------c----------cccccccceeeccc---CCCceEEEEeCccHHHHHHHHH-
Confidence 2221111 0 00223333333333 4446666788988999999888
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccccccccccccccCcCCCccCCCchhhhHHHhHHHhhhcCcccccCCCCCCC
Q 000959 360 HDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSP 439 (1208)
Q Consensus 360 hd~dslpsptr~~~~~~pv~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~dalkavs~yqqkf~~~s~f~~~~~psp 439 (1208)
..++.++..-++.-++...+. |..+..... +.++..++. +.+|.+.+|+.+
T Consensus 215 ---klfemhVyTmg~R~YA~~i~~----liDP~~~lF-------~dRIisrde---------------~~~~kt~dL~~~ 265 (635)
T KOG0323|consen 215 ---KLFEMHVYTMGTRDYALEIAK----LIDPEGKYF-------GDRIISRDE---------------SPFFKTLDLVLL 265 (635)
T ss_pred ---hhceeEEEeccchHHHHHHHH----HhCCCCccc-------cceEEEecC---------------CCcccccccccC
Confidence 777888888777777666655 444332211 133333333 889999999999
Q ss_pred CCCCCCCCCCCCCCcccccccccCCCCCCCCCC---------CCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCC
Q 000959 440 TPSEESGDGDGDTGGEISSATAVDQPKPVNMPT---------LGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGY 510 (1208)
Q Consensus 440 tps~~~~~~~~d~~~evss~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 510 (1208)
+|.|++-.=.+|--+-|==. ... |.+. .+.+.++ ++-| ++.+-+....|.
T Consensus 266 ~p~g~smvvIIDDr~dVW~~----~~~--nLI~i~~y~yF~~~gd~nap-------~~~~--------~~~~~~~~~~~~ 324 (635)
T KOG0323|consen 266 FPCGDSMVVIIDDRSDVWPD----HKR--NLIQIAPYPYFSGQGDINAP-------PPLH--------VLRNVACSVRGA 324 (635)
T ss_pred CCCCCccEEEEeCccccccC----CCc--ceEEeeeeecccCcccccCC-------cccc--------cccchhcccccc
Confidence 99998764433333322211 111 2221 1222221 1111 333444444444
Q ss_pred CCCCCCCCcccCCCccCCcccccccCcccccCCCCCccCCCCCCccccccccccccccccCCCCCCchhhhhhccCCCCC
Q 000959 511 NPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENS 590 (1208)
Q Consensus 511 ~~~~~~~~~~k~saksrdprlr~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~d~~~~kr~~~~~~n~ 590 (1208)
-....++|+++|++++|+.+.|.+.--.++ ++..|... .+++++.++.
T Consensus 325 -----~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-p~~~~~~~~~----------------- 372 (635)
T KOG0323|consen 325 -----FFKEFDPSLKSRISEVRYEDDDESNPTSYS---------VELSANPG-PLKQDGMDEF----------------- 372 (635)
T ss_pred -----cccccCcccccccccccccccccccCcccc---------cccccccC-cccccccccc-----------------
Confidence 566779999999999999999863211111 11111111 2222222221
Q ss_pred ccccccccccCCCCccccccCCcccccccccccccccccccccCCCCCCCccCCCcccccCCCCCCCcccCccccchHHh
Q 000959 591 GVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPAL 670 (1208)
Q Consensus 591 ~~~~~~~~~~g~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 670 (1208)
T Consensus 373 -------------------------------------------------------------------------------- 372 (635)
T KOG0323|consen 373 -------------------------------------------------------------------------------- 372 (635)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccChHHHHHHHHhhhhhhhHHHhhhccCCCCCCcCCCCCCCCCCCcccccccCCCCCCCCCcccCceecccCCCcc
Q 000959 671 LKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRR 750 (1208)
Q Consensus 671 lk~iavnpt~l~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~irmkprdprr 750 (1208)
.|. . -+|..++|+++||++|++|
T Consensus 373 ---------------------------------------~~~-~-----------------~~~~~~~~s~~~~~~de~~ 395 (635)
T KOG0323|consen 373 ---------------------------------------VPE-E-----------------NAPEARSGSYREKKSDESD 395 (635)
T ss_pred ---------------------------------------ccc-c-----------------cchhhcccccccccccccc
Confidence 000 0 3456889999999999999
Q ss_pred cccccccccc--CCCCCccccCCCCCCCCCCCccchhhhhccCCCCCCcccccc----cCCCchhhHHhhcccccccccc
Q 000959 751 VLHGNALQRS--GSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQS----VLQPDITQQFTKNLKHIADFMS 824 (1208)
Q Consensus 751 ~lh~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~i~~~~t~~~~~i~d~~s 824 (1208)
.-+.-.-+-. .......+.-.. ...++-+..|++..-.+..++.+-.-- -..|....+++ +|++-
T Consensus 396 ~D~~L~~~~kvl~~vH~~ff~~~~---~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~------s~~~~ 466 (635)
T KOG0323|consen 396 EDGELANLLKVLKPVHKGFFAKYD---EVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDES------ADILG 466 (635)
T ss_pred cchhHHHHhhhhcccchhhhhccc---cccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcch------hhhhh
Confidence 7553222111 111222221111 112233334444444443333222211 12233333333 77777
Q ss_pred cCccCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCccccccchhccCCchHHHHHHhHH
Q 000959 825 VSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKE 904 (1208)
Q Consensus 825 ~sq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~~~~f~~L~~Gy~~~q~a~I~ke 904 (1208)
++|+.....++. ++...-+. ...++..........-...-.+.+.....-+..|+...+.+..+.+.+++.+.++
T Consensus 467 ~~~~~g~vs~~~----~~~~~th~-i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~~~~~~~ 541 (635)
T KOG0323|consen 467 VAQQLGAVSAPD----VSDKTTHL-IAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEPLDDDQRAAIRRE 541 (635)
T ss_pred hhhcccceeccc----ccchhhhH-HhhccCcceeeccccccceeEechhHHHHHHHHhcchhcccccccccccchhccc
Confidence 777655222211 11111110 0122222233333222222223336677788899999999999999999888887
Q ss_pred HHhhHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHH
Q 000959 905 RTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLE 984 (1208)
Q Consensus 905 ~arrLe~q~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLe 984 (1208)
.-.+...+..+.. .++.++.++|++++.+..+..++-.+..++...+......++..+++...+..|++.+ ++
T Consensus 542 ~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~------~~ 614 (635)
T KOG0323|consen 542 SLARLYEQEKVFP-PKLSLVAPLDNELQESGKENEVNSRTELLDETGEDVSSEPPDRHLERELPSSMWIKLL------LE 614 (635)
T ss_pred chhhhhhhhcccc-hhhhccCccchhhhhccccchhcccchhhccccCcccCCCCCccchhhccccCccccc------hh
Confidence 7777777777777 8999999999999988765544444444544444444445566777777778888888 88
Q ss_pred HhhcccEEEEEcCCcHHHHH
Q 000959 985 RASKLFEMHLYTMGNKLYAT 1004 (1208)
Q Consensus 985 eLSklYEIVIYTAGtreYAd 1004 (1208)
+.+..|+.+-||++.+-||.
T Consensus 615 ~~~~~~~~~~~~s~~~~~~~ 634 (635)
T KOG0323|consen 615 KASKLYELHLYTSGNKHRAE 634 (635)
T ss_pred hhhhHHHhccCCcccccccC
Confidence 99999999999999988764
No 12
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.57 E-value=1.2e-07 Score=81.66 Aligned_cols=56 Identities=20% Similarity=0.142 Sum_probs=46.0
Q ss_pred ceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHHHHHHHHhcC
Q 000959 1147 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLL 1207 (1208)
Q Consensus 1147 C~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeKVr~A~~~gi 1207 (1208)
|+|+|||+.+.. ...++++++.+||.+..+++.+||||||....++|+++|++.||
T Consensus 1 ~~i~~sg~~~~~-----~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi 56 (63)
T PF12738_consen 1 VVICFSGFSGKE-----RSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGI 56 (63)
T ss_dssp -EEEEEEB-TTT-----CCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTS
T ss_pred CEEEECCCCHHH-----HHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCC
Confidence 689999987643 57899999999999999999999999999999999999999886
No 13
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.01 E-value=8.9e-06 Score=70.40 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=53.6
Q ss_pred HHhhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCC--CcHHHHHHHHhcC
Q 000959 1140 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL--GTDKVLLVVFSLL 1207 (1208)
Q Consensus 1140 RrkVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~--GTeKVr~A~~~gi 1207 (1208)
+..+|+||.|+|++. + ..+...++++++.+||++...+++.|||||+... .+.|...|...++
T Consensus 2 ~~~~F~g~~f~i~~~-~----~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i 66 (78)
T PF00533_consen 2 KPKIFEGCTFCISGF-D----SDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGI 66 (78)
T ss_dssp STTTTTTEEEEESST-S----SSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTS
T ss_pred CCCCCCCEEEEEccC-C----CCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCC
Confidence 357899999999442 2 2345678999999999999999999999999987 9999999999886
No 14
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=97.78 E-value=5.9e-05 Score=62.15 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=48.7
Q ss_pred CceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHH-HHHHHHhcC
Q 000959 1146 GCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDK-VLLVVFSLL 1207 (1208)
Q Consensus 1146 GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeK-Vr~A~~~gi 1207 (1208)
||.|+|+|.++ ....+.+.++++.+||++..+++..+||||+......+ +..|...++
T Consensus 1 ~~~~~i~g~~~----~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~ 59 (72)
T cd00027 1 GLTFVITGDLP----SEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGI 59 (72)
T ss_pred CCEEEEEecCC----CcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCC
Confidence 78999999875 23457899999999999999999999999999877666 777777664
No 15
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=97.74 E-value=5.8e-05 Score=63.61 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=49.1
Q ss_pred hhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCC-CccEEEeCCCCcHH--HHHHHHhcC
Q 000959 1142 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDD-QVTHVVANSLGTDK--VLLVVFSLL 1207 (1208)
Q Consensus 1142 kVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~-~VTHVVAa~~GTeK--Vr~A~~~gi 1207 (1208)
.+|+||+|+|+|-+ ..+....++++++.+||++...+++ .+||+|+......+ +..|...++
T Consensus 1 ~~f~g~~~~~~g~~----~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~ 65 (80)
T smart00292 1 KLFKGKVFVITGKF----DKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGI 65 (80)
T ss_pred CccCCeEEEEeCCC----CCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCC
Confidence 37899999999821 2234578999999999999999998 99999999866555 466666554
No 16
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.34 E-value=0.00031 Score=64.00 Aligned_cols=62 Identities=24% Similarity=0.202 Sum_probs=49.8
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcc-cEEEEEcCCcH
Q 000959 922 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNK 1000 (1208)
Q Consensus 922 TLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSkl-YEIVIYTAGtr 1000 (1208)
++|+|+|+||+...... . . .....++|++.+||+++.+. +.++|+|++.+
T Consensus 1 ~~vfD~D~tl~~~~~~~------~-----------------~------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~ 51 (139)
T cd01427 1 AVLFDLDGTLLDSEPGI------A-----------------E------IEELELYPGVKEALKELKEKGIKLALATNKSR 51 (139)
T ss_pred CeEEccCCceEccCccc------c-----------------c------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchH
Confidence 48999999999775210 0 0 12367899999999999976 99999999999
Q ss_pred HHHHHHHHHhcC
Q 000959 1001 LYATEMAKVLDP 1012 (1208)
Q Consensus 1001 eYAd~VLdiLDP 1012 (1208)
.++..+++.+.-
T Consensus 52 ~~~~~~~~~~~~ 63 (139)
T cd01427 52 REVLELLEELGL 63 (139)
T ss_pred HHHHHHHHHcCC
Confidence 999999988754
No 17
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=97.11 E-value=0.00038 Score=79.50 Aligned_cols=61 Identities=26% Similarity=0.232 Sum_probs=56.5
Q ss_pred HhhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHHHHHHHHhc
Q 000959 1141 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSL 1206 (1208)
Q Consensus 1141 rkVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeKVr~A~~~g 1206 (1208)
.++|+|+++|+||+ .||++..|..-|-.|||++..|-+..+|||||+=.+|.|++|-.-+|
T Consensus 315 ~klL~GVV~VlSGf-----qNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~G 375 (508)
T KOG3226|consen 315 SKLLEGVVFVLSGF-----QNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNG 375 (508)
T ss_pred HHhhhceEEEEecc-----cCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCC
Confidence 57999999999996 57888999999999999999999999999999999999999987766
No 18
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.05 E-value=0.0013 Score=74.05 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=61.1
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEec-cCHHHHHHHhhcc-cE
Q 000959 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FE 991 (1208)
Q Consensus 914 rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLR-PGLdEFLeeLSkl-YE 991 (1208)
.+.-+.+..+|+|||+|||.... -|.+| ||+.++|++|.+. +-
T Consensus 120 ~~~~~~~kvIvFDLDgTLi~~~~-----------------------------------~v~irdPgV~EaL~~LkekGik 164 (301)
T TIGR01684 120 SKVFEPPHVVVFDLDSTLITDEE-----------------------------------PVRIRDPRIYDSLTELKKRGCI 164 (301)
T ss_pred ccccccceEEEEecCCCCcCCCC-----------------------------------ccccCCHHHHHHHHHHHHCCCE
Confidence 35566778999999999996531 15578 9999999999976 89
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 000959 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1208)
Q Consensus 992 IVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRD 1025 (1208)
+.|+|.+.+.++..+++.++-.+ +|. .|++.+
T Consensus 165 LaIaTS~~Re~v~~~L~~lGLd~-YFd-vIIs~G 196 (301)
T TIGR01684 165 LVLWSYGDRDHVVESMRKVKLDR-YFD-IIISGG 196 (301)
T ss_pred EEEEECCCHHHHHHHHHHcCCCc-ccC-EEEECC
Confidence 99999999999999999988875 774 466544
No 19
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.03 E-value=0.0017 Score=73.20 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=61.0
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEec-cCHHHHHHHhhc-ccE
Q 000959 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASK-LFE 991 (1208)
Q Consensus 914 rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLR-PGLdEFLeeLSk-lYE 991 (1208)
.+.-..+..+|+|||+|||.... -|.+| |++.++|++|.+ .+-
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~-----------------------------------~v~irdp~V~EtL~eLkekGik 166 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEE-----------------------------------PVRIRDPFVYDSLDELKERGCV 166 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCC-----------------------------------ccccCChhHHHHHHHHHHCCCE
Confidence 45567788999999999997631 15578 999999999997 499
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 000959 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1208)
Q Consensus 992 IVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRD 1025 (1208)
+.|+|+|.+.++..+++.+.-.+ +|.. |++.+
T Consensus 167 LaIvTNg~Re~v~~~Le~lgL~~-yFDv-II~~g 198 (303)
T PHA03398 167 LVLWSYGNREHVVHSLKETKLEG-YFDI-IICGG 198 (303)
T ss_pred EEEEcCCChHHHHHHHHHcCCCc-cccE-EEECC
Confidence 99999999999999999988865 7753 66544
No 20
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.74 E-value=0.001 Score=65.14 Aligned_cols=80 Identities=14% Similarity=0.061 Sum_probs=52.7
Q ss_pred EeccCHHHHHHHhh-cccEEEEEcCC-cHHHHHHHHHHhcCC------CceeeeeEEecCCCCCCCCCCCCCCccccCCC
Q 000959 974 KLRPGIWTFLERAS-KLFEMHLYTMG-NKLYATEMAKVLDPK------GVLFAGRVISRGDDGDPFDGDERVPKSKDLEG 1045 (1208)
Q Consensus 974 KLRPGLdEFLeeLS-klYEIVIYTAG-treYAd~VLdiLDP~------gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsr 1045 (1208)
++.||+.++|+.+. ..|.++|.|++ .+.|+..+++.+.+. ..+|.. ++..++. + .+..+.+=+.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~-----p-kp~~~~~a~~- 100 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWL-----P-KSPRLVEIAL- 100 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCC-----c-HHHHHHHHHH-
Confidence 57899999999996 47999999999 999999999987631 123433 2211110 0 0112222233
Q ss_pred ccC--CC-CcEEEEcCCCc
Q 000959 1046 VLG--ME-SAVVIIDDSVR 1061 (1208)
Q Consensus 1046 VLG--rD-srVVIIDDrpd 1061 (1208)
.+| .. +.+|+|||++.
T Consensus 101 ~lg~~~~p~~~l~igDs~~ 119 (128)
T TIGR01681 101 KLNGVLKPKSILFVDDRPD 119 (128)
T ss_pred HhcCCCCcceEEEECCCHh
Confidence 357 55 88999999864
No 21
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.63 E-value=0.0092 Score=57.39 Aligned_cols=100 Identities=17% Similarity=0.081 Sum_probs=62.8
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEcCCc-
Q 000959 922 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN- 999 (1208)
Q Consensus 922 TLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYTAGt- 999 (1208)
.|+||+|+||++... ..++ + -+..+.|++.++|++|.+ .|.++|.|++.
T Consensus 2 ~~~~D~dgtL~~~~~--~~~~----~-----------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~ 52 (132)
T TIGR01662 2 GVVLDLDGTLTDDVP--YVDD----E-----------------------DERILYPEVPDALAELKEAGYKVVIVTNQSG 52 (132)
T ss_pred EEEEeCCCceecCCC--CCCC----H-----------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCcc
Confidence 689999999996421 0111 0 125578999999999975 59999999999
Q ss_pred -------HHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCcc-CCC-CcEEEEcCC
Q 000959 1000 -------KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME-SAVVIIDDS 1059 (1208)
Q Consensus 1000 -------reYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVL-GrD-srVVIIDDr 1059 (1208)
..++..+++.+.-. ++. ++..... .+.. ...+.+=++ .+ +.+ +.+|+|+|+
T Consensus 53 ~~~~~~~~~~~~~~l~~~~l~--~~~--~~~~~~~---~KP~-~~~~~~~~~-~~~~~~~~~~v~IGD~ 112 (132)
T TIGR01662 53 IGRGKFSSGRVARRLEELGVP--IDV--LYACPHC---RKPK-PGMFLEALK-RFNEIDPEESVYVGDQ 112 (132)
T ss_pred ccccHHHHHHHHHHHHHCCCC--EEE--EEECCCC---CCCC-hHHHHHHHH-HcCCCChhheEEEcCC
Confidence 88888888887643 222 2222211 1110 011222233 35 355 789999994
No 22
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.54 E-value=0.0062 Score=63.70 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=63.3
Q ss_pred EEEEeccCHHHHHHHhh-cccEEEEEcCC-cHHHHHHHHHHhcCC--C------ceeeeeEEecCCCCCCCCCCCCCCcc
Q 000959 971 MWTKLRPGIWTFLERAS-KLFEMHLYTMG-NKLYATEMAKVLDPK--G------VLFAGRVISRGDDGDPFDGDERVPKS 1040 (1208)
Q Consensus 971 ~yVKLRPGLdEFLeeLS-klYEIVIYTAG-treYAd~VLdiLDP~--g------kLFs~RIiSRDDc~~~fdG~er~~yv 1040 (1208)
.-+.++||+.++|+.|. +.+.+.|.|+. ...|+..+++.++-. | .+|... ++-++. ...... ....
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~i-v~~~~~-~~~kp~--~~i~ 117 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDR-IEIYKP-NKAKQL--EMIL 117 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceee-eeccCC-chHHHH--HHHH
Confidence 35788999999999997 56999999988 999999999998754 2 577654 432221 000000 0001
Q ss_pred ccCCCcc--CCC-CcEEEEcCCCcccccCCCCeEEe
Q 000959 1041 KDLEGVL--GME-SAVVIIDDSVRVWPHNKLNLIVV 1073 (1208)
Q Consensus 1041 KDLsrVL--GrD-srVVIIDDrpdVW~~qpdNlI~I 1073 (1208)
+.+...+ |.. +.+|+|||++.-...-..+++.+
T Consensus 118 ~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~ 153 (174)
T TIGR01685 118 QKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTS 153 (174)
T ss_pred HHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEE
Confidence 2222222 345 78999999987664433455544
No 23
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=96.22 E-value=0.013 Score=72.17 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=54.3
Q ss_pred hhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHHHHHHHHhcCC
Q 000959 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS 1208 (1208)
Q Consensus 1143 VL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeKVr~A~~~gi~ 1208 (1208)
.|.|..+||+|-|+.. .+..+.++++++||+++.+|+.+|+.|||......|..+|.+.||.
T Consensus 593 ~l~gktfV~TG~l~~~----~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~ 654 (669)
T PRK14350 593 FLFGKKFCITGSFNGY----SRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIK 654 (669)
T ss_pred ccCCcEEEEecccCCC----CHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCE
Confidence 5899999999987643 2567889999999999999999999999997666899999999973
No 24
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=96.19 E-value=0.015 Score=71.70 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=53.7
Q ss_pred hcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHHHHHHHHhcCC
Q 000959 1144 LAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS 1208 (1208)
Q Consensus 1144 L~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeKVr~A~~~gi~ 1208 (1208)
|.|-+|||+|.++.. .+..++.+++.+||+|+.+|+.+|+-|||...-+.|...|.+.||.
T Consensus 591 ~~g~~~v~TG~l~~~----~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ 651 (665)
T PRK07956 591 LAGKTVVLTGTLEQL----SRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIE 651 (665)
T ss_pred ccccEEEEeCCCCCC----CHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCe
Confidence 889999999988642 2567899999999999999999999999998666999999999973
No 25
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=96.13 E-value=0.0082 Score=67.66 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=52.9
Q ss_pred hhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCC--cHHHHHHHHhcCC
Q 000959 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLG--TDKVLLVVFSLLS 1208 (1208)
Q Consensus 1143 VL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~G--TeKVr~A~~~gi~ 1208 (1208)
+|.|-+|||+|-+.. .+..++++++.+||.|.+.|+.+|+.|||..+. +.|.+.|.++||.
T Consensus 232 l~~g~~~v~TG~l~~-----~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ 294 (313)
T PRK06063 232 LVQGMRVALSAEVSR-----THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVP 294 (313)
T ss_pred ccCCCEEEEecCCCC-----CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCc
Confidence 579999999998752 246899999999999999999999999998743 3899999999984
No 26
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.02 E-value=0.021 Score=58.52 Aligned_cols=108 Identities=13% Similarity=0.032 Sum_probs=65.8
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEcCC-
Q 000959 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG- 998 (1208)
Q Consensus 921 LTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYTAG- 998 (1208)
..|.||.|+||++...+ + +. .. ..-++++-||+.++|++|.+ -|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~----~---~~------------------~~-~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS----D---FQ------------------VD-ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred CEEEEeCCCCccccCCC----c---cc------------------cC-CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 57999999999985321 0 00 00 00146788999999999986 5999999996
Q ss_pred --------------cHHHHHHHHHHhcCCCceeeeeEEe----cCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCC
Q 000959 999 --------------NKLYATEMAKVLDPKGVLFAGRVIS----RGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDS 1059 (1208)
Q Consensus 999 --------------treYAd~VLdiLDP~gkLFs~RIiS----RDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDr 1059 (1208)
...|+..+++.++-. |.+.+++ .+++ ...++. . ..+..+-..++.+ +.+++|+|+
T Consensus 56 g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~-~~~KP~-~-~~~~~~~~~~~~~~~e~l~IGD~ 129 (161)
T TIGR01261 56 GLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNC-DCRKPK-I-KLLEPYLKKNLIDKARSYVIGDR 129 (161)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCC-CCCCCC-H-HHHHHHHHHcCCCHHHeEEEeCC
Confidence 356777777777654 6554554 1222 112210 0 0011111124555 789999998
Q ss_pred C
Q 000959 1060 V 1060 (1208)
Q Consensus 1060 p 1060 (1208)
.
T Consensus 130 ~ 130 (161)
T TIGR01261 130 E 130 (161)
T ss_pred H
Confidence 4
No 27
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.97 E-value=0.021 Score=58.68 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=46.0
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhh-cccEEEEEcC
Q 000959 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM 997 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLS-klYEIVIYTA 997 (1208)
.+.+++||+|+||+-+.... ..+. .| .-|..+-||+.++|++|. +.|.+.|.|+
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~-~~~~--------------~~----------~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN 66 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGK-VFPT--------------SA----------SDWRFLYPEIPAKLQELDDEGYKIVIFTN 66 (166)
T ss_pred cCcEEEEeCCCceEecCCCC-cccC--------------Ch----------HHeEEecCCHHHHHHHHHHCCCEEEEEeC
Confidence 44678999999999754210 0000 01 114445699999999996 6799999999
Q ss_pred CcHH------------HHHHHHHHhcC
Q 000959 998 GNKL------------YATEMAKVLDP 1012 (1208)
Q Consensus 998 Gtre------------YAd~VLdiLDP 1012 (1208)
+... ++..+++.++-
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~~gl 93 (166)
T TIGR01664 67 QSGIGRGKLSAESFKNKIEAFLEKLKV 93 (166)
T ss_pred CcccccCcccHHHHHHHHHHHHHHcCC
Confidence 8763 45556666554
No 28
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=95.90 E-value=0.023 Score=70.43 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=54.0
Q ss_pred hhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCC-CCcHHHHHHHHhcCC
Q 000959 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVLLVVFSLLS 1208 (1208)
Q Consensus 1143 VL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~-~GTeKVr~A~~~gi~ 1208 (1208)
.|.|-.+||+|.+... .+..++++++.+||+++.+|+.+|+.||+.. .|..|...|.+.||.
T Consensus 609 ~l~g~~~v~TG~l~~~----~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ 671 (689)
T PRK14351 609 ALDGLTFVFTGSLSGY----TRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVP 671 (689)
T ss_pred CCCCcEEEEccCCCCC----CHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCe
Confidence 4899999999987643 2567899999999999999999999999986 565899999999873
No 29
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.89 E-value=0.022 Score=64.26 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=59.7
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEe-ccCHHHHHHHhhccc-E
Q 000959 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKL-RPGIWTFLERASKLF-E 991 (1208)
Q Consensus 914 rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKL-RPGLdEFLeeLSklY-E 991 (1208)
.+.-..+-++|+|||.|||.... + +.+ -|.+.+.|.++.+.+ -
T Consensus 116 ~~~~~~phVIVfDlD~TLItd~~-----~------------------------------v~Ir~~~v~~sL~~Lk~~g~v 160 (297)
T PF05152_consen 116 SLVWEPPHVIVFDLDSTLITDEG-----D------------------------------VRIRDPAVYDSLRELKEQGCV 160 (297)
T ss_pred hccCCCCcEEEEECCCcccccCC-----c------------------------------cccCChHHHHHHHHHHHcCCE
Confidence 45567888999999999997642 0 112 378889999999776 9
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 000959 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1208)
Q Consensus 992 IVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRD 1025 (1208)
+++|+.|.++|+..-++.+.-.+ +|.- |++++
T Consensus 161 LvLWSyG~~eHV~~sl~~~~L~~-~Fd~-ii~~G 192 (297)
T PF05152_consen 161 LVLWSYGNREHVRHSLKELKLEG-YFDI-IICGG 192 (297)
T ss_pred EEEecCCCHHHHHHHHHHhCCcc-ccEE-EEeCC
Confidence 99999999999999999998775 7864 77664
No 30
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=95.85 E-value=0.014 Score=65.49 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=50.9
Q ss_pred hhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCC---------CCcHHHHHHHHh
Q 000959 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---------LGTDKVLLVVFS 1205 (1208)
Q Consensus 1143 VL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~---------~GTeKVr~A~~~ 1205 (1208)
.|.|-+|||+|.|... .+..++++++.+||+|...|+.+|+.||+.. ..+.|..+|.+.
T Consensus 220 ~l~g~~~vfTG~l~~~----~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l 287 (309)
T PRK06195 220 AFKEEVVVFTGGLASM----TRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDL 287 (309)
T ss_pred cccCCEEEEccccCCC----CHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHH
Confidence 5999999999988532 2567899999999999999999999999984 346899999886
No 31
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.83 E-value=0.0061 Score=66.24 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=82.3
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcc-cEEEEE
Q 000959 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLY 995 (1208)
Q Consensus 917 s~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSkl-YEIVIY 995 (1208)
..++..+++|+|+||....... | .+|.. .....+.|++.++|+++.+. +.++|.
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~~---~--~~~~~--------------------~~~~~~~~~~~~~l~~l~~~g~~i~i~ 209 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGRS---P--YDWTK--------------------VKEDKPNPMVVELVKMYKAAGYEIIVV 209 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCCC---c--cchhh--------------------cccCCCChhHHHHHHHHHhCCCEEEEE
Confidence 4457899999999999654210 1 01110 01245699999999999764 999999
Q ss_pred cCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCC--CC-CC--CCccccCCCccCC-C-CcEEEEcCCCcccccCCC
Q 000959 996 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFD--GD-ER--VPKSKDLEGVLGM-E-SAVVIIDDSVRVWPHNKL 1068 (1208)
Q Consensus 996 TAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fd--G~-er--~~yvKDLsrVLGr-D-srVVIIDDrpdVW~~qpd 1068 (1208)
|+....++..+++.|+-.+.+|.. ++..+....+.. +. .+ ..+.+-|.+ ++. . ..+|+|||++..-..-..
T Consensus 210 T~r~~~~~~~~l~~l~~~~~~f~~-i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~-~~~~~~~~~~~vgD~~~d~~~a~~ 287 (300)
T PHA02530 210 SGRDGVCEEDTVEWLRQTDIWFDD-LIGRPPDMHFQREQGDKRPDDVVKEEIFWE-KIAPKYDVLLAVDDRDQVVDMWRR 287 (300)
T ss_pred eCCChhhHHHHHHHHHHcCCchhh-hhCCcchhhhcccCCCCCCcHHHHHHHHHH-HhccCceEEEEEcCcHHHHHHHHH
Confidence 999999999999999988867764 554442110000 00 00 011223433 344 3 789999999876544344
Q ss_pred CeEEe
Q 000959 1069 NLIVV 1073 (1208)
Q Consensus 1069 NlI~I 1073 (1208)
++|.+
T Consensus 288 ~Gi~~ 292 (300)
T PHA02530 288 IGLEC 292 (300)
T ss_pred hCCeE
Confidence 55543
No 32
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=95.79 E-value=0.015 Score=63.42 Aligned_cols=101 Identities=10% Similarity=0.109 Sum_probs=59.0
Q ss_pred hhcCCCeEEEEeCCCceeecccCC-----CCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-
Q 000959 915 MFSARKLCLVLDLDHTLLNSAKFH-----EVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK- 988 (1208)
Q Consensus 915 LLs~rKLTLVLDLDETLIHSt~~~-----evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk- 988 (1208)
|-..+++.++|||||||+.|...- ..++..-.++. ..+....+. ....-.....|++.+||+++.+
T Consensus 58 ~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~-------g~~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~ 129 (237)
T TIGR01672 58 LEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLK-------NQVFWEKVN-NGWDEFSIPKEVARQLIDMHQRR 129 (237)
T ss_pred cCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhc-------ChHHHHHHH-HhcccCCcchhHHHHHHHHHHHC
Confidence 344567799999999999997420 00110000000 000000000 0011223444559999999975
Q ss_pred ccEEEEEcCC----cHHHHHHHHHHhcCCCceeeeeEEecC
Q 000959 989 LFEMHLYTMG----NKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1208)
Q Consensus 989 lYEIVIYTAG----treYAd~VLdiLDP~gkLFs~RIiSRD 1025 (1208)
-+.|+|.|+. ...+++.+++.+.-.. +|. -|+..+
T Consensus 130 G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f~-~i~~~d 168 (237)
T TIGR01672 130 GDAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MNP-VIFAGD 168 (237)
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHhCCch-hee-EEECCC
Confidence 5999999998 7779999999877654 664 356544
No 33
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.64 E-value=0.041 Score=56.58 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=76.5
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEcCCcH
Q 000959 922 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGNK 1000 (1208)
Q Consensus 922 TLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYTAGtr 1000 (1208)
.+|||+|+||..-...+.+.|-...+- ++ .+ ....+.-|.+||++.+||+++.. -|-+-.+|=.-.
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs----------~n--~i-~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~ 68 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVS----------SN--TI-EDSKGREVHLFPDVKETLKWARNSGYILGLASWNFE 68 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecC----------cc--ce-ecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCch
Confidence 479999999985443333333111000 00 00 11346779999999999999975 688889999999
Q ss_pred HHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCcc-------CC---CCcEEEEcCCCccc
Q 000959 1001 LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-------GM---ESAVVIIDDSVRVW 1063 (1208)
Q Consensus 1001 eYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVL-------Gr---DsrVVIIDDrpdVW 1063 (1208)
.-|-++++.||-.. ||..-++- -+ ..+ -+-|..++ +. .+.+|.+|||.-.+
T Consensus 69 ~kA~~aLral~~~~-yFhy~Vie-Ph---P~K-------~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~ 129 (164)
T COG4996 69 DKAIKALRALDLLQ-YFHYIVIE-PH---PYK-------FLMLSQLLREINTERNQKIKPSEIVYLDDRRIHF 129 (164)
T ss_pred HHHHHHHHHhchhh-hEEEEEec-CC---Chh-------HHHHHHHHHHHHHhhccccCcceEEEEecccccH
Confidence 99999999999987 89876652 21 111 12233222 11 26899999998544
No 34
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.60 E-value=0.013 Score=65.45 Aligned_cols=104 Identities=24% Similarity=0.249 Sum_probs=66.3
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEcC
Q 000959 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 997 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYTA 997 (1208)
.+++||+|||+||.....- + +. + ..+. +....|++.++|+.|.+ -+-+.|.|+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~---e-------------~g--~--~~i~------~~~~~~~~~e~L~~L~~~Gi~lai~S~ 55 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLG---E-------------DG--I--DNLN------LSPLHKTLQEKIKTLKKQGFLLALASK 55 (320)
T ss_pred CeEEEEEcCCCCCCCCEEc---c-------------CC--c--cccc------cCccHHHHHHHHHHHHhCCCEEEEEcC
Confidence 3689999999999965421 0 00 0 0000 12347899999999974 689999999
Q ss_pred CcHHHHHHHHHH----hcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCC---ccCCC-CcEEEEcCCCc
Q 000959 998 GNKLYATEMAKV----LDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEG---VLGME-SAVVIIDDSVR 1061 (1208)
Q Consensus 998 GtreYAd~VLdi----LDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsr---VLGrD-srVVIIDDrpd 1061 (1208)
..+.+|..+++. +.... +|..-... +. ++...|.. -+|.. ..+|+|||++.
T Consensus 56 n~~~~a~~~l~~~~~~~~~~~-~f~~~~~~----~~--------pk~~~i~~~~~~l~i~~~~~vfidD~~~ 114 (320)
T TIGR01686 56 NDEDDAKKVFERRKDFILQAE-DFDARSIN----WG--------PKSESLRKIAKKLNLGTDSFLFIDDNPA 114 (320)
T ss_pred CCHHHHHHHHHhCccccCcHH-HeeEEEEe----cC--------chHHHHHHHHHHhCCCcCcEEEECCCHH
Confidence 999999999986 44332 45432111 11 22222222 24555 78999999874
No 35
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=95.38 E-value=0.057 Score=55.13 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=24.4
Q ss_pred EEeccCHHHHHHHhhcc-cEEEEEcCCcH
Q 000959 973 TKLRPGIWTFLERASKL-FEMHLYTMGNK 1000 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSkl-YEIVIYTAGtr 1000 (1208)
+.+.||+.++|++|.+. |.+.|.|++..
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSG 56 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 45789999999999875 99999999873
No 36
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.37 E-value=0.065 Score=59.72 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=57.0
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCc-ceeeeeccceEEEEeccCHHHHHHHhh-cccEEEE
Q 000959 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPH-RHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHL 994 (1208)
Q Consensus 917 s~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~-~~lFrlp~~~~yVKLRPGLdEFLeeLS-klYEIVI 994 (1208)
..+|+.+|||||||++..... ...-... ..++ ...+.--....-...-||+.+||+.+. +-+.|+|
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y------~~~~~~~------~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~i 139 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPY------QGYQVLN------NKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFY 139 (266)
T ss_pred CCCCCEEEEeCccccccChHH------HHHHhcC------CCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEE
Confidence 678999999999999976521 1000000 0000 000000000012446799999999996 4689999
Q ss_pred EcCCcHHHHHHHHHHhcCCCc--eeeeeEEecC
Q 000959 995 YTMGNKLYATEMAKVLDPKGV--LFAGRVISRG 1025 (1208)
Q Consensus 995 YTAGtreYAd~VLdiLDP~gk--LFs~RIiSRD 1025 (1208)
.|+....+.....+.|.-.|- ++...|+.|+
T Consensus 140 VTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 140 VSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred EeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC
Confidence 999987777766666654442 2334566664
No 37
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=95.35 E-value=0.043 Score=55.95 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.4
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcH
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNK 1000 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtr 1000 (1208)
+++-||+.++|++|.+ -|.++|.|+...
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4567999999999985 599999999985
No 38
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=95.07 E-value=0.028 Score=70.64 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=52.3
Q ss_pred HHhhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCC-----CCcHHHHHHHHhcCC
Q 000959 1140 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-----LGTDKVLLVVFSLLS 1208 (1208)
Q Consensus 1140 RrkVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~-----~GTeKVr~A~~~gi~ 1208 (1208)
....|.|+.|||||-++. .+..+..+++.+||+|+..| .++||+|++. .|+.|+.+|++.||.
T Consensus 186 ~~kpL~G~~fviTGtl~~-----sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIp 253 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR-----THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIP 253 (815)
T ss_pred cCCCcCCcEEEEeCCCCC-----CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCc
Confidence 455799999999998753 23567789999999999999 6788999887 357899999999873
No 39
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=94.88 E-value=0.045 Score=67.55 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=53.5
Q ss_pred hhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHHHHHHHHhcCC
Q 000959 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS 1208 (1208)
Q Consensus 1143 VL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeKVr~A~~~gi~ 1208 (1208)
.|.|-.|||+|-++.. .+..+..+++.+||+++.+|+.+|+.||+...-..|...|.+.||.
T Consensus 584 ~l~gk~~v~TG~l~~~----~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ 645 (652)
T TIGR00575 584 PLAGKTFVLTGTLSQM----SRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIP 645 (652)
T ss_pred CccCcEEEEeccCCCC----CHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCc
Confidence 4889999999987643 2567889999999999999999999999987555699999999873
No 40
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=94.84 E-value=0.04 Score=57.77 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=62.3
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEc-C
Q 000959 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT-M 997 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYT-A 997 (1208)
...+|+|||.||-.......+.|-... .. .. .--....+.-+++-|++.+.|+.|.. -..|.|-+ .
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~--------~~--~~--~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt 70 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKK--------IS--NG--NVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRT 70 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE---------T--TS----EEETT--EE---TTHHHHHHHHHHCT--EEEEE--
T ss_pred CcEEEEcCcCCCCchhHhhccCCCcee--------cC--CC--CEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECC
Confidence 457899999999976543322221000 00 00 01112345568999999999999984 78999888 5
Q ss_pred CcHHHHHHHHHHhcCC---------CceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCc
Q 000959 998 GNKLYATEMAKVLDPK---------GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1061 (1208)
Q Consensus 998 GtreYAd~VLdiLDP~---------gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpd 1061 (1208)
..+.+|.++++.|+-. ..+|.+--|..+ + ...+.+.|.+-.|-+ +.++.+||...
T Consensus 71 ~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-s--------K~~Hf~~i~~~tgI~y~eMlFFDDe~~ 135 (169)
T PF12689_consen 71 DEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-S--------KTTHFRRIHRKTGIPYEEMLFFDDESR 135 (169)
T ss_dssp S-HHHHHHHHHHTT-C----------CCECEEEESSS----------HHHHHHHHHHHH---GGGEEEEES-HH
T ss_pred CChHHHHHHHHhcCCCccccccccchhhcchhheecC-c--------hHHHHHHHHHhcCCChhHEEEecCchh
Confidence 7899999999998766 124544323222 1 012344454445666 78999999754
No 41
>COG5275 BRCT domain type II [General function prediction only]
Probab=94.58 E-value=0.06 Score=58.82 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=56.4
Q ss_pred HHHHhhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCC-CCcHHHHHHHHhcC
Q 000959 1138 AEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVLLVVFSLL 1207 (1208)
Q Consensus 1138 eiRrkVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~-~GTeKVr~A~~~gi 1207 (1208)
+..+..|.|..|||+|+++.= .+.....++..+||+|+..+..++|.||+.. .|-.|+..+++.+|
T Consensus 151 eg~~~cL~G~~fVfTG~l~Tl----sR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkI 217 (276)
T COG5275 151 EGERECLKGKVFVFTGDLKTL----SRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKI 217 (276)
T ss_pred CCCcccccccEEEEecccccc----cchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCC
Confidence 346789999999999999842 2345678899999999999999999999986 88999999999887
No 42
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=94.41 E-value=0.12 Score=51.40 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=45.6
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhh-cccEEEEEcCCcH
Q 000959 922 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMGNK 1000 (1208)
Q Consensus 922 TLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLS-klYEIVIYTAGtr 1000 (1208)
+|++|+|+||+...... ....| --+++.||+.++|+.|. +-|.++|.|++.+
T Consensus 2 ~~~~d~dgtl~~~~~~~----~~~~~-----------------------~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 2 ALFLDRDGVINEDTVSD----YPRSL-----------------------DDWQLRPGAVPALLTLRAAGYTVVVVTNQSG 54 (147)
T ss_pred eEEEeCCCceeccCCcc----cCCCH-----------------------HHeEEcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence 68999999999875210 00000 01457899999999996 5699999999874
Q ss_pred ---------------HHHHHHHHHhcC
Q 000959 1001 ---------------LYATEMAKVLDP 1012 (1208)
Q Consensus 1001 ---------------eYAd~VLdiLDP 1012 (1208)
.++..+++.++-
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~l~~~~l 81 (147)
T TIGR01656 55 IGRGYFSAEAFRAPNGRVLELLRQLGV 81 (147)
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 566667776653
No 43
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=94.10 E-value=0.049 Score=59.68 Aligned_cols=96 Identities=10% Similarity=0.040 Sum_probs=57.7
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceee---------eeccceEEEEeccCHHHHHHHh-
Q 000959 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLF---------RFPHMGMWTKLRPGIWTFLERA- 986 (1208)
Q Consensus 917 s~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lF---------rlp~~~~yVKLRPGLdEFLeeL- 986 (1208)
..+++.+++|+|||+++++... ++....- .|....| .......+....||+.+||+.+
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~--------~~~~~~f----~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~ 127 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGF--------WRGKKTF----SPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHV 127 (237)
T ss_pred CCCCcEEEEECcCccccCCchh--------eeeeecc----CCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHH
Confidence 3457799999999999865210 1100000 0000001 0011233566677799999999
Q ss_pred hcccEEEEEcC----CcHHHHHHHHHHhcC-CCceeeeeEEecC
Q 000959 987 SKLFEMHLYTM----GNKLYATEMAKVLDP-KGVLFAGRVISRG 1025 (1208)
Q Consensus 987 SklYEIVIYTA----GtreYAd~VLdiLDP-~gkLFs~RIiSRD 1025 (1208)
.+-++|+|-|+ ....+++.+++.+.- ...+|. -++..+
T Consensus 128 ~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~-vil~gd 170 (237)
T PRK11009 128 KRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP-VIFAGD 170 (237)
T ss_pred HCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee-EEEcCC
Confidence 67899999998 457788988886653 234664 355433
No 44
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=93.91 E-value=0.13 Score=63.51 Aligned_cols=63 Identities=17% Similarity=0.076 Sum_probs=54.4
Q ss_pred hhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHHHHHHHHhcCC
Q 000959 1142 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLLS 1208 (1208)
Q Consensus 1142 kVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeKVr~A~~~gi~ 1208 (1208)
.+|.|-.|||+|-++.- .+..+..+++++||+|+.+|..+|.-|||..+-..|...|++.||.
T Consensus 593 ~~l~gkt~V~TGtL~~~----sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~ 655 (667)
T COG0272 593 SPLAGKTFVLTGTLEGM----SRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVK 655 (667)
T ss_pred cccCCCEEEEeccCCCC----CHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCe
Confidence 45999999999988732 2456778899999999999999999999998777799999999974
No 45
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=93.38 E-value=0.31 Score=56.55 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=40.0
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEcC
Q 000959 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 997 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYTA 997 (1208)
+|.+|+||-|+||+..... . +. ......+.+.||+.+||++|.+ .|.++|.|+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~----~----y~------------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTN 54 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPT----D----FQ------------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTN 54 (354)
T ss_pred CCcEEEEeCCCCccCCCCc----c----cc------------------ccCcccceECcCHHHHHHHHHhCCCeEEEEEC
Confidence 4789999999999986420 0 00 0011247889999999999986 599999999
Q ss_pred C
Q 000959 998 G 998 (1208)
Q Consensus 998 G 998 (1208)
.
T Consensus 55 q 55 (354)
T PRK05446 55 Q 55 (354)
T ss_pred C
Confidence 4
No 46
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=93.27 E-value=0.094 Score=67.37 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=51.9
Q ss_pred HHhhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCC---CCcHHHHHHHHhcC
Q 000959 1140 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---LGTDKVLLVVFSLL 1207 (1208)
Q Consensus 1140 RrkVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~---~GTeKVr~A~~~gi 1207 (1208)
..+.|.|++|+++|-|+.. ...+.++++.+||+++..|+..|||+|+.. ....|+++|++.||
T Consensus 390 ~~~~l~~~~i~i~G~~~~~-----~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~i 455 (981)
T PLN03123 390 ESEFLGDLKVSIVGASKEK-----VTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKI 455 (981)
T ss_pred cCCCcCCeEEEEecCCCCc-----HHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCC
Confidence 4578999999999987531 123446799999999999999999999985 55789999998876
No 47
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=93.20 E-value=0.094 Score=54.14 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=59.5
Q ss_pred EEEeccCHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSkl-YEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
++.+.||+.+||++|.+. |.+.|.|++...++...++.++-.. +|.. +++.++.+. .++. +..+.+-++ .+|.+
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~ 166 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDA-VITSEEEGV-EKPH-PKIFYAALK-RLGVK 166 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccE-EEEeccCCC-CCCC-HHHHHHHHH-HcCCC
Confidence 468999999999999865 9999999999999999999887654 7865 665544321 1110 011223333 35665
Q ss_pred -CcEEEEcCCC
Q 000959 1051 -SAVVIIDDSV 1060 (1208)
Q Consensus 1051 -srVVIIDDrp 1060 (1208)
+.+|+|+|++
T Consensus 167 ~~~~~~igDs~ 177 (221)
T TIGR02253 167 PEEAVMVGDRL 177 (221)
T ss_pred hhhEEEECCCh
Confidence 7899999986
No 48
>PRK08238 hypothetical protein; Validated
Probab=92.58 E-value=0.13 Score=61.51 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=57.3
Q ss_pred EEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCCC
Q 000959 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 1051 (1208)
Q Consensus 973 VKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrDs 1051 (1208)
..++|++.++|+++. +-+.++|-|++.+.|++.+++.+. +|. .+++-++... ..|. ++..-|...++. .
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lG----lFd-~Vigsd~~~~-~kg~---~K~~~l~~~l~~-~ 140 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLG----LFD-GVFASDGTTN-LKGA---AKAAALVEAFGE-R 140 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC----CCC-EEEeCCCccc-cCCc---hHHHHHHHHhCc-c
Confidence 357899999999986 569999999999999999999984 365 4665443211 1111 111112222332 3
Q ss_pred cEEEEcCCC---cccccCCCCeEEec
Q 000959 1052 AVVIIDDSV---RVWPHNKLNLIVVE 1074 (1208)
Q Consensus 1052 rVVIIDDrp---dVW~~qpdNlI~Ik 1074 (1208)
.++.+.|+. .+|.. -+|.+.|.
T Consensus 141 ~~~yvGDS~~Dlp~~~~-A~~av~Vn 165 (479)
T PRK08238 141 GFDYAGNSAADLPVWAA-ARRAIVVG 165 (479)
T ss_pred CeeEecCCHHHHHHHHh-CCCeEEEC
Confidence 356777766 35544 35666664
No 49
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=92.25 E-value=0.16 Score=48.83 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=60.2
Q ss_pred EEEEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCC
Q 000959 971 MWTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 1049 (1208)
Q Consensus 971 ~yVKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGr 1049 (1208)
...++.|++.+||+.+. +.|.++|+|++.+.++..+++.+.-. .+|.. +++.++.+. .+.. ...+.+=+. -+|.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~-i~~~~~~~~-~Kp~-~~~~~~~~~-~~~~ 148 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDE-IISSDDVGS-RKPD-PDAYRRALE-KLGI 148 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSE-EEEGGGSSS-STTS-HHHHHHHHH-HHTS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccccc-ccccchhhh-hhhH-HHHHHHHHH-HcCC
Confidence 45899999999999999 89999999999999999999988655 46774 665544321 1110 001111122 2355
Q ss_pred C-CcEEEEcCCCc
Q 000959 1050 E-SAVVIIDDSVR 1061 (1208)
Q Consensus 1050 D-srVVIIDDrpd 1061 (1208)
. ..+|.|||++.
T Consensus 149 ~p~~~~~vgD~~~ 161 (176)
T PF13419_consen 149 PPEEILFVGDSPS 161 (176)
T ss_dssp SGGGEEEEESSHH
T ss_pred CcceEEEEeCCHH
Confidence 5 78999999873
No 50
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=91.23 E-value=0.54 Score=47.42 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=38.4
Q ss_pred EeccCHHHHHHHh-hcccEEEEEcCCcHHHHH------------HHHHHhcCCCceeeeeEEec
Q 000959 974 KLRPGIWTFLERA-SKLFEMHLYTMGNKLYAT------------EMAKVLDPKGVLFAGRVISR 1024 (1208)
Q Consensus 974 KLRPGLdEFLeeL-SklYEIVIYTAGtreYAd------------~VLdiLDP~gkLFs~RIiSR 1024 (1208)
...+.+.+.|+++ .+-++|++.|+-...+.. .+.++|+-.+--|. .|+-|
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd-~l~~~ 86 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYD-EIYVG 86 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCc-eEEeC
Confidence 4678888899988 578999999988887766 78889988775554 35544
No 51
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=91.18 E-value=0.36 Score=49.67 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=34.2
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEcCC
Q 000959 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 998 (1208)
Q Consensus 921 LTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYTAG 998 (1208)
+++.+|||+|||.+..... +. .+ + .=|..+-|++.+-|+++.+ -|.|+|+|+.
T Consensus 1 Kia~fD~DgTLi~~~s~~~-------f~-----~~---~----------~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKK-------FP-----KD---P----------DDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTT-------S------SS---T----------CGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCc-------Cc-----CC---H----------HHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3689999999998853110 00 00 1 1145577899999999875 7999999986
No 52
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=91.10 E-value=0.49 Score=57.49 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=66.1
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEc
Q 000959 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT 996 (1208)
Q Consensus 918 ~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYT 996 (1208)
.+.+++.||||+|||.+..... -+. + + .-|..+-||+.+.|++|.+ -|.|+|+|
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~-~~~-----------~---~----------~d~~~l~pgV~e~L~~L~~~Gy~IvIvT 220 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKV-FPK-----------G---P----------DDWQIIFPEIPEKLKELEADGFKICIFT 220 (526)
T ss_pred ccCcEEEEECCCCccccCCCcc-CCC-----------C---H----------HHeeecccCHHHHHHHHHHCCCEEEEEE
Confidence 5668999999999997642100 000 0 0 0133356999999999985 59999999
Q ss_pred CCcH------------HHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCc---cccCCCccCCC-CcEEEEcCCC
Q 000959 997 MGNK------------LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPK---SKDLEGVLGME-SAVVIIDDSV 1060 (1208)
Q Consensus 997 AGtr------------eYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~y---vKDLsrVLGrD-srVVIIDDrp 1060 (1208)
+... .++..|++.|+- .|. -+++.++| .+.+.. ...+ .+++..-++.+ +.+++|.|+.
T Consensus 221 NQ~gI~~G~~~~~~~~~ki~~iL~~lgi---pfd-viia~~~~-~~RKP~-pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 221 NQGGIARGKINADDFKAKIEAIVAKLGV---PFQ-VFIAIGAG-FYRKPL-TGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred CCcccccCcccHHHHHHHHHHHHHHcCC---ceE-EEEeCCCC-CCCCCC-HHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 9776 467777777753 355 35544432 122211 0000 12221011345 6889999886
No 53
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=91.05 E-value=0.3 Score=50.04 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=59.6
Q ss_pred EEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
.+.++||+.++|+.+.+ .|.+.|.|++.+.++..+++.++=.+ +|. .+++.++... .++. +..+.+-+. .+|..
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~-~Kp~-p~~~~~~~~-~~~~~ 157 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFS-VLIGGDSLAQ-RKPH-PDPLLLAAE-RLGVA 157 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCc-EEEecCCCCC-CCCC-hHHHHHHHH-HcCCC
Confidence 36789999999999975 59999999999999999999887554 675 4665543211 1110 011222233 35655
Q ss_pred -CcEEEEcCCCccc
Q 000959 1051 -SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1051 -srVVIIDDrpdVW 1063 (1208)
+.+++|+|+..-.
T Consensus 158 ~~~~~~igDs~~d~ 171 (213)
T TIGR01449 158 PQQMVYVGDSRVDI 171 (213)
T ss_pred hhHeEEeCCCHHHH
Confidence 6799999997544
No 54
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=91.01 E-value=0.28 Score=48.63 Aligned_cols=83 Identities=27% Similarity=0.261 Sum_probs=53.4
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+.+.||+.+||+.+.+ -|.++|.|++...+ ..++..++-.. +|.. ++..++... .+++ +..+.+=++ .+|.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~~ 157 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDV-VIFSGDVGR-GKPD-PDIYLLALK-KLGLKP 157 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCE-EEEcCCCCC-CCCC-HHHHHHHHH-HcCCCc
Confidence 6789999999999975 69999999999999 66665565544 6765 443332221 1110 001111122 35655
Q ss_pred CcEEEEcCCCc
Q 000959 1051 SAVVIIDDSVR 1061 (1208)
Q Consensus 1051 srVVIIDDrpd 1061 (1208)
..+|+|||++.
T Consensus 158 ~~~~~vgD~~~ 168 (183)
T TIGR01509 158 EECLFVDDSPA 168 (183)
T ss_pred ceEEEEcCCHH
Confidence 78999999863
No 55
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=90.99 E-value=0.5 Score=48.52 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=45.5
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcc-cEEEEEc
Q 000959 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 996 (1208)
Q Consensus 918 ~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSkl-YEIVIYT 996 (1208)
..-..||+|+|+||..... ...-|++.++|++|.+. +.++|.|
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~------------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~S 66 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH------------------------------------NEAYPALRDWIEELKAAGRKLLIVS 66 (170)
T ss_pred CCCCEEEEecCCccccCCC------------------------------------CCcChhHHHHHHHHHHcCCEEEEEe
Confidence 5667899999999985420 12358999999999865 9999999
Q ss_pred CCc-HHHHHHHHHHhc
Q 000959 997 MGN-KLYATEMAKVLD 1011 (1208)
Q Consensus 997 AGt-reYAd~VLdiLD 1011 (1208)
++. ..++..+++.++
T Consensus 67 n~~~~~~~~~~~~~~g 82 (170)
T TIGR01668 67 NNAGEQRAKAVEKALG 82 (170)
T ss_pred CCchHHHHHHHHHHcC
Confidence 999 677887777664
No 56
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=90.83 E-value=0.3 Score=50.20 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=59.4
Q ss_pred EEEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCcc-CCC
Q 000959 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVL-GrD 1050 (1208)
.++++||+.++|+++.+.|.++|-|++...++..+++.+.=.+ +|. .+++.++.. ..+++ +..+.+-+. .+ |..
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd-~i~~~~~~~-~~KP~-~~~~~~~~~-~~~~~~ 169 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFD-DIFVSEDAG-IQKPD-KEIFNYALE-RMPKFS 169 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcC-EEEEcCccC-CCCCC-HHHHHHHHH-HhcCCC
Confidence 3689999999999998779999999999999999998875544 776 466544332 12211 011223344 35 655
Q ss_pred -CcEEEEcCCC
Q 000959 1051 -SAVVIIDDSV 1060 (1208)
Q Consensus 1051 -srVVIIDDrp 1060 (1208)
..+|+|+|++
T Consensus 170 ~~~~v~igD~~ 180 (224)
T TIGR02254 170 KEEVLMIGDSL 180 (224)
T ss_pred chheEEECCCc
Confidence 7899999986
No 57
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=90.00 E-value=0.41 Score=51.56 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=60.3
Q ss_pred EEEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
.+.+.||+.++|++|. +.|.+.|-|++.+.|+..+++.++-.. +|.. +++.+++.. .++. +..+.+-+. .+|.+
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-iv~~~~~~~-~KP~-p~~~~~a~~-~~~~~ 180 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQA-VIIGSECEH-AKPH-PDPYLKALE-VLKVS 180 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcE-EEecCcCCC-CCCC-hHHHHHHHH-HhCCC
Confidence 3677899999999995 569999999999999999999987654 7865 665554321 1211 112233343 35655
Q ss_pred -CcEEEEcCCCc
Q 000959 1051 -SAVVIIDDSVR 1061 (1208)
Q Consensus 1051 -srVVIIDDrpd 1061 (1208)
..+|+|+|++.
T Consensus 181 ~~~~l~vgDs~~ 192 (248)
T PLN02770 181 KDHTFVFEDSVS 192 (248)
T ss_pred hhHEEEEcCCHH
Confidence 78999999974
No 58
>PRK06769 hypothetical protein; Validated
Probab=89.46 E-value=0.84 Score=47.06 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=24.0
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcH
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNK 1000 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtr 1000 (1208)
+.+-||+.++|++|.+ -|.+.|.|+...
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 4567999999999975 699999999875
No 59
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=89.26 E-value=0.63 Score=48.05 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
.++.+||+.+||+.+.+ .+.++|.|++...|+..+++.++-.. +|. .+++.++.. ..+.. +..+.+-+. .++..
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~-~~kp~-~~~~~~~~~-~~~~~ 165 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFS-VVIGGDSLP-NKKPD-PAPLLLACE-KLGLD 165 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Ccc-EEEcCCCCC-CCCcC-hHHHHHHHH-HcCCC
Confidence 36789999999999985 69999999999999999999887544 565 466544321 11110 001111122 34555
Q ss_pred -CcEEEEcCCCccc
Q 000959 1051 -SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1051 -srVVIIDDrpdVW 1063 (1208)
+.+|+|+|+..-.
T Consensus 166 ~~~~i~igD~~~Di 179 (226)
T PRK13222 166 PEEMLFVGDSRNDI 179 (226)
T ss_pred hhheEEECCCHHHH
Confidence 7899999996433
No 60
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=89.22 E-value=0.6 Score=48.19 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=62.7
Q ss_pred EEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
.+.+.||+.++|++|.+ .|.++|.|++.+.++..+++.++-.+ +|.. +++.+++. ..++. ...+.+=++ .+|.+
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~-~~KP~-~~~~~~~~~-~~~~~ 147 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDH-VIGSDEVP-RPKPA-PDIVREALR-LLDVP 147 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heee-EEecCcCC-CCCCC-hHHHHHHHH-HcCCC
Confidence 36789999999999975 69999999999999999999887665 6764 66554432 11110 001111122 34655
Q ss_pred -CcEEEEcCCCcccccCCCCeEE
Q 000959 1051 -SAVVIIDDSVRVWPHNKLNLIV 1072 (1208)
Q Consensus 1051 -srVVIIDDrpdVW~~qpdNlI~ 1072 (1208)
+.+++|+|+..-...-...++.
T Consensus 148 ~~~~l~igD~~~Di~aA~~~Gi~ 170 (205)
T TIGR01454 148 PEDAVMVGDAVTDLASARAAGTA 170 (205)
T ss_pred hhheEEEcCCHHHHHHHHHcCCe
Confidence 7899999986433222234444
No 61
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=89.22 E-value=0.43 Score=48.83 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=56.6
Q ss_pred EEeccCHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSkl-YEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+.+.||+.++|+++.+. |.++|.|++...++..+++.+.=. .+|.. +++.++.. ..+.. +..|.+=++ .+|..
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~p 165 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFDA-VLSADAVR-AYKPA-PQVYQLALE-ALGVPP 165 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhhe-eEehhhcC-CCCCC-HHHHHHHHH-HhCCCh
Confidence 56789999999999986 999999999999999999887533 36764 66544322 11211 001112122 34655
Q ss_pred CcEEEEcCCC
Q 000959 1051 SAVVIIDDSV 1060 (1208)
Q Consensus 1051 srVVIIDDrp 1060 (1208)
+.+|+|+|++
T Consensus 166 ~~~~~vgD~~ 175 (198)
T TIGR01428 166 DEVLFVASNP 175 (198)
T ss_pred hhEEEEeCCH
Confidence 7899999987
No 62
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=89.16 E-value=0.44 Score=52.43 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=60.7
Q ss_pred EEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
.+.+.||+.++|+.|.+ .|-++|.|++.+.|+..+++.++-.. +|.. +++.+++. ..++. +..+.+-+. .+|..
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-ii~~~d~~-~~KP~-Pe~~~~a~~-~l~~~ 181 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSV-VLAAEDVY-RGKPD-PEMFMYAAE-RLGFI 181 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcE-EEecccCC-CCCCC-HHHHHHHHH-HhCCC
Confidence 36679999999999985 59999999999999999999886544 7775 66555432 11211 112233333 35665
Q ss_pred -CcEEEEcCCCccc
Q 000959 1051 -SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1051 -srVVIIDDrpdVW 1063 (1208)
..+|+|+|+..-.
T Consensus 182 p~~~l~IgDs~~Di 195 (260)
T PLN03243 182 PERCIVFGNSNSSV 195 (260)
T ss_pred hHHeEEEcCCHHHH
Confidence 7899999996433
No 63
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=88.73 E-value=0.32 Score=49.33 Aligned_cols=82 Identities=20% Similarity=0.245 Sum_probs=55.1
Q ss_pred EEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCC---CCCCCCCCccccCCCccCC
Q 000959 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDP---FDGDERVPKSKDLEGVLGM 1049 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~---fdG~er~~yvKDLsrVLGr 1049 (1208)
++..||+.++|++|. |.++|.|++.+.++..+++.++-.. +|.. |++.++.... .++. +..+.+-+. .+|.
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~-i~~~~~~~~~~~~~KP~-p~~~~~~~~-~~~~ 156 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDG-IFCFDTANPDYLLPKPS-PQAYEKALR-EAGV 156 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCe-EEEeecccCccCCCCCC-HHHHHHHHH-HhCC
Confidence 457899999999997 6899999999999999999886543 7875 6654432110 0110 011222233 2465
Q ss_pred C-CcEEEEcCCC
Q 000959 1050 E-SAVVIIDDSV 1060 (1208)
Q Consensus 1050 D-srVVIIDDrp 1060 (1208)
+ +.+++|+|++
T Consensus 157 ~~~~~l~vgD~~ 168 (184)
T TIGR01993 157 DPERAIFFDDSA 168 (184)
T ss_pred CccceEEEeCCH
Confidence 5 7899999986
No 64
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=88.43 E-value=0.64 Score=49.74 Aligned_cols=87 Identities=15% Similarity=0.038 Sum_probs=60.0
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCC--
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-- 1049 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGr-- 1049 (1208)
+.+.||+.++|+.|.+ .|.+.|-|++.+.+++.+++.+.-.+ +|-+.|++.++.. ..+++ +..+.+-+. .+|.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~-~~KP~-p~~~~~a~~-~l~~~~ 173 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVP-AGRPA-PWMALKNAI-ELGVYD 173 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCC-CCCCC-HHHHHHHHH-HcCCCC
Confidence 5788999999999975 59999999999999999999887665 5435677665422 11211 112233333 3454
Q ss_pred CCcEEEEcCCCccc
Q 000959 1050 ESAVVIIDDSVRVW 1063 (1208)
Q Consensus 1050 DsrVVIIDDrpdVW 1063 (1208)
...+|+|.|++.=.
T Consensus 174 ~~~~l~IGDs~~Di 187 (253)
T TIGR01422 174 VAACVKVGDTVPDI 187 (253)
T ss_pred chheEEECCcHHHH
Confidence 36799999997433
No 65
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=88.28 E-value=0.26 Score=51.13 Aligned_cols=78 Identities=22% Similarity=0.174 Sum_probs=43.0
Q ss_pred EEeccCHHHHHHHhhcc-cEEEEEcCCcHH-H---HHHHHHHhcCC-CceeeeeEEecCCCCCCCCCCCCCCccccCCCc
Q 000959 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKL-Y---ATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGV 1046 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSkl-YEIVIYTAGtre-Y---Ad~VLdiLDP~-gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrV 1046 (1208)
...=||+.+.|++|.+. |++++.|+.... | +..=.+.|+-. +.++.++++--. -|.+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~--------------~K~~--- 134 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG--------------DKTL--- 134 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES--------------SGGG---
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec--------------CCCe---
Confidence 66779999999999987 478777776654 2 33445566543 223333333211 1332
Q ss_pred cCCCCcEEEEcCCCcccccCCCCe
Q 000959 1047 LGMESAVVIIDDSVRVWPHNKLNL 1070 (1208)
Q Consensus 1047 LGrDsrVVIIDDrpdVW~~qpdNl 1070 (1208)
++.| |+|||++.....-...+
T Consensus 135 v~~D---vlIDD~~~n~~~~~~~g 155 (191)
T PF06941_consen 135 VGGD---VLIDDRPHNLEQFANAG 155 (191)
T ss_dssp C--S---EEEESSSHHHSS-SSES
T ss_pred Eecc---EEecCChHHHHhccCCC
Confidence 3333 79999998776544444
No 66
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=87.83 E-value=0.34 Score=50.39 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=60.9
Q ss_pred EEEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
.+...||+.+||+.+. |.+.|.|++.+.+++.+++.++-.. +|...+++.++... .++. +..+.+=+. .+|..
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~-~KP~-p~~~~~a~~-~~~~~p 159 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQR-WKPD-PALMFHAAE-AMNVNV 159 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCC-CCCC-hHHHHHHHH-HcCCCH
Confidence 3677899999999994 8999999999999999998776544 67544666543221 1110 001222232 24555
Q ss_pred CcEEEEcCCCcccccCCCCeEE
Q 000959 1051 SAVVIIDDSVRVWPHNKLNLIV 1072 (1208)
Q Consensus 1051 srVVIIDDrpdVW~~qpdNlI~ 1072 (1208)
+.+|+|+|++.-...-...++.
T Consensus 160 ~~~l~igDs~~di~aA~~aG~~ 181 (221)
T PRK10563 160 ENCILVDDSSAGAQSGIAAGME 181 (221)
T ss_pred HHeEEEeCcHhhHHHHHHCCCE
Confidence 7899999987655332233444
No 67
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=87.56 E-value=1 Score=46.81 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=59.9
Q ss_pred EEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
.+++.||+.++|+.|.+ .+.+.|.|++.+.++..+++.++=.. +|.. +++.+++.. .+.. +..+.+-+. -++..
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~-i~~~~~~~~-~Kp~-p~~~~~~~~-~~~~~ 154 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDV-VITLDDVEH-AKPD-PEPVLKALE-LLGAK 154 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeE-EEecCcCCC-CCCC-cHHHHHHHH-HcCCC
Confidence 36788999999999975 69999999999999999999987654 7864 666544321 1110 001222222 24544
Q ss_pred -CcEEEEcCCCccc
Q 000959 1051 -SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1051 -srVVIIDDrpdVW 1063 (1208)
+.+|+|+|++.=.
T Consensus 155 ~~~~~~iGDs~~Di 168 (214)
T PRK13288 155 PEEALMVGDNHHDI 168 (214)
T ss_pred HHHEEEECCCHHHH
Confidence 7899999997444
No 68
>PRK09449 dUMP phosphatase; Provisional
Probab=87.46 E-value=0.73 Score=47.99 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=58.1
Q ss_pred EEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCC-C-
Q 000959 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGr-D- 1050 (1208)
+.+.||+.++|+.|.+.|-+.|.|++.+.++..+++.+.-.+ +|.. ++..++.. ..+++ +..+.+-+. -+|. .
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~-~~KP~-p~~~~~~~~-~~~~~~~ 168 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDL-LVISEQVG-VAKPD-VAIFDYALE-QMGNPDR 168 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCE-EEEECccC-CCCCC-HHHHHHHHH-HcCCCCc
Confidence 568999999999999889999999999999999998876554 6764 65544432 12221 112223344 2453 3
Q ss_pred CcEEEEcCCC
Q 000959 1051 SAVVIIDDSV 1060 (1208)
Q Consensus 1051 srVVIIDDrp 1060 (1208)
..+|+|+|+.
T Consensus 169 ~~~~~vgD~~ 178 (224)
T PRK09449 169 SRVLMVGDNL 178 (224)
T ss_pred ccEEEEcCCc
Confidence 5799999996
No 69
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=87.40 E-value=1.2 Score=44.62 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=40.3
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEe
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1023 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiS 1023 (1208)
+.++||+.++|+.+.+ .|.++|.|++...++..+++.++-.. +|.. +++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-i~~ 120 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIE-IYS 120 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeE-Eec
Confidence 6899999999999975 59999999999999999999876433 5653 553
No 70
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=87.32 E-value=1 Score=48.35 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=35.0
Q ss_pred ccCHHHHHHHhhc-ccEEEEEcCCcHHHHH--HHHHHhcCCCceeeeeEEec
Q 000959 976 RPGIWTFLERASK-LFEMHLYTMGNKLYAT--EMAKVLDPKGVLFAGRVISR 1024 (1208)
Q Consensus 976 RPGLdEFLeeLSk-lYEIVIYTAGtreYAd--~VLdiLDP~gkLFs~RIiSR 1024 (1208)
-||+.++|++|.+ -+.++|.|++.+.++. ..++.+.-...+|.. |++.
T Consensus 26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~-Ii~s 76 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEM-IISS 76 (242)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccce-EEcc
Confidence 5899999999975 6899999999988776 566666544324543 5543
No 71
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.63 E-value=1.3 Score=48.37 Aligned_cols=57 Identities=21% Similarity=0.096 Sum_probs=44.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcc-cEEEEEcCC
Q 000959 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 998 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSkl-YEIVIYTAG 998 (1208)
.+.|++|||+||+.... ...|...+.|+++.+. +.++|.|.-
T Consensus 4 ~kli~~DlDGTLl~~~~-------------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR 46 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-------------------------------------YSYEPAKPALKALKEKGIPVIPCTSK 46 (273)
T ss_pred ceEEEEcCcccCcCCCC-------------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46899999999996421 0235677888888764 899999999
Q ss_pred cHHHHHHHHHHhcCC
Q 000959 999 NKLYATEMAKVLDPK 1013 (1208)
Q Consensus 999 treYAd~VLdiLDP~ 1013 (1208)
...++..+++.|+-.
T Consensus 47 ~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 47 TAAEVEVLRKELGLE 61 (273)
T ss_pred CHHHHHHHHHHcCCC
Confidence 999999999887644
No 72
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=86.39 E-value=0.93 Score=47.07 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=41.6
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEE
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIi 1022 (1208)
++++||+.+||+.+.+ .+.++|.|++...++..+++.+.-.. +|..++.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~ 133 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLE 133 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEE
Confidence 5789999999999986 69999999999999999999876554 6765543
No 73
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=85.95 E-value=1.4 Score=46.48 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=42.4
Q ss_pred EEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEE
Q 000959 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIi 1022 (1208)
.+.+|||+.+||+.+.+ .+.++|.|++.+.|++.+++.+.+...+|.+++.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~ 119 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEAD 119 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeE
Confidence 47899999999999987 5999999999999999999988654445554443
No 74
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=85.43 E-value=1.5 Score=41.94 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.3
Q ss_pred ccCHHHHHHHhhcc-cEEEEEcCCc----HHHHHHH
Q 000959 976 RPGIWTFLERASKL-FEMHLYTMGN----KLYATEM 1006 (1208)
Q Consensus 976 RPGLdEFLeeLSkl-YEIVIYTAGt----reYAd~V 1006 (1208)
=||+.+||++|.+. ..+++.|+.+ ..|++.+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 48999999999875 9999999998 5565555
No 75
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=85.24 E-value=1.1 Score=47.05 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=59.9
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+.+.||+.++|+.+.+ .|.++|.|++.+.+++.+++.+.=.+ +|.. +++.++.. ..+++ ...+..-++ .+|..
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~Kp~-~~~~~~~~~-~~~~~~ 165 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDA-LASAEKLP-YSKPH-PEVYLNCAA-KLGVDP 165 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccE-EEEcccCC-CCCCC-HHHHHHHHH-HcCCCH
Confidence 5678999999999975 69999999999999999999877554 6764 66655321 11110 001222222 34665
Q ss_pred CcEEEEcCCCcccc
Q 000959 1051 SAVVIIDDSVRVWP 1064 (1208)
Q Consensus 1051 srVVIIDDrpdVW~ 1064 (1208)
+.+|+|+|+..-+.
T Consensus 166 ~~~~~igDs~~Di~ 179 (222)
T PRK10826 166 LTCVALEDSFNGMI 179 (222)
T ss_pred HHeEEEcCChhhHH
Confidence 78999999986554
No 76
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=84.41 E-value=1.2 Score=45.45 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=27.4
Q ss_pred ccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhc
Q 000959 976 RPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLD 1011 (1208)
Q Consensus 976 RPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLD 1011 (1208)
-|...+.|+++. +-+.++|.|.-....+..+++.+.
T Consensus 17 ~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 53 (254)
T PF08282_consen 17 SPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELG 53 (254)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhcccceEEEEEccCccccccccccccc
Confidence 345566777766 678999999888888888888654
No 77
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=83.94 E-value=1.4 Score=45.54 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=58.6
Q ss_pred EEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-C
Q 000959 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-s 1051 (1208)
+...|++.++|+++.+.|.++|.|+|...++...++.+- =..+|.. |+.-++.+ ..+++ +..|..-+. .+|.+ .
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~-v~~s~~~g-~~KP~-~~~f~~~~~-~~g~~p~ 172 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDA-VFISEDVG-VAKPD-PEIFEYALE-KLGVPPE 172 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhhe-EEEecccc-cCCCC-cHHHHHHHH-HcCCCcc
Confidence 678899999999999889999999999999999999775 3457876 44334333 22211 011122233 34655 7
Q ss_pred cEEEEcCCCcc
Q 000959 1052 AVVIIDDSVRV 1062 (1208)
Q Consensus 1052 rVVIIDDrpdV 1062 (1208)
.++.|||+...
T Consensus 173 ~~l~VgD~~~~ 183 (229)
T COG1011 173 EALFVGDSLEN 183 (229)
T ss_pred eEEEECCChhh
Confidence 89999998643
No 78
>PRK11587 putative phosphatase; Provisional
Probab=83.80 E-value=1.6 Score=45.77 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=56.6
Q ss_pred EEEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
.+.+.||+.+||+.|. +.|.+.|-|++.+.++..+++.+.- .+|. -+++.++.. ..++ .+..+.+-+. .+|..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l--~~~~-~i~~~~~~~-~~KP-~p~~~~~~~~-~~g~~ 154 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL--PAPE-VFVTAERVK-RGKP-EPDAYLLGAQ-LLGLA 154 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC--CCcc-EEEEHHHhc-CCCC-CcHHHHHHHH-HcCCC
Confidence 4678999999999997 5699999999999988877776543 2343 366554322 1122 1122334344 35655
Q ss_pred -CcEEEEcCCCcc
Q 000959 1051 -SAVVIIDDSVRV 1062 (1208)
Q Consensus 1051 -srVVIIDDrpdV 1062 (1208)
+.+|+|+|++.-
T Consensus 155 p~~~l~igDs~~d 167 (218)
T PRK11587 155 PQECVVVEDAPAG 167 (218)
T ss_pred cccEEEEecchhh
Confidence 789999999743
No 79
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=83.51 E-value=2.5 Score=45.47 Aligned_cols=59 Identities=29% Similarity=0.223 Sum_probs=48.0
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHh-hcccEEEEEcC
Q 000959 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERA-SKLFEMHLYTM 997 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeL-SklYEIVIYTA 997 (1208)
.++.|++|||+||+.... .++|...+.|+++ .+-+.++|-|-
T Consensus 2 ~~kli~~DlDGTLl~~~~-------------------------------------~i~~~~~~al~~~~~~g~~v~iaTG 44 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK-------------------------------------TISPETKEALARLREKGVKVVLATG 44 (264)
T ss_pred CeeEEEEcCCCCccCCCC-------------------------------------ccCHHHHHHHHHHHHCCCEEEEECC
Confidence 356899999999997742 0467777888877 57899999999
Q ss_pred CcHHHHHHHHHHhcCCC
Q 000959 998 GNKLYATEMAKVLDPKG 1014 (1208)
Q Consensus 998 GtreYAd~VLdiLDP~g 1014 (1208)
-....+..+++.|...+
T Consensus 45 R~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 45 RPLPDVLSILEELGLDG 61 (264)
T ss_pred CChHHHHHHHHHcCCCc
Confidence 99999999999888776
No 80
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=83.45 E-value=1.8 Score=45.99 Aligned_cols=87 Identities=17% Similarity=0.084 Sum_probs=58.7
Q ss_pred EEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
++.+.||+.++|+.|.+ .+-+.|.|++...++..+++.++-.. +|. .+++.+++. ..++. +..+.+-++ .+|..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~-~~KP~-p~~~~~~~~-~l~~~ 167 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCA-VLIGGDTLA-ERKPH-PLPLLVAAE-RIGVA 167 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-ccc-EEEecCcCC-CCCCC-HHHHHHHHH-HhCCC
Confidence 46889999999999975 48999999999999999998876544 565 355544322 11111 111222233 35655
Q ss_pred -CcEEEEcCCCccc
Q 000959 1051 -SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1051 -srVVIIDDrpdVW 1063 (1208)
+.+|+|+|+..-.
T Consensus 168 p~~~l~IGDs~~Di 181 (229)
T PRK13226 168 PTDCVYVGDDERDI 181 (229)
T ss_pred hhhEEEeCCCHHHH
Confidence 7899999997433
No 81
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=83.15 E-value=1.1 Score=47.73 Aligned_cols=86 Identities=19% Similarity=0.067 Sum_probs=58.1
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+.+.||+.++|+.|.+ .|-+.|-|++.+.++..+++.+.-. .+|.. +++-++.. ..+.. +..+.+=+. .+|.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-iv~s~~~~-~~KP~-p~~~~~~~~-~~~~~p 166 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHLDL-LLSTHTFG-YPKED-QRLWQAVAE-HTGLKA 166 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHCCE-EEEeeeCC-CCCCC-HHHHHHHHH-HcCCCh
Confidence 6789999999999986 5999999999999999998876543 36775 44433321 11110 011222233 35655
Q ss_pred CcEEEEcCCCccc
Q 000959 1051 SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1051 srVVIIDDrpdVW 1063 (1208)
..+|+|+|++.-.
T Consensus 167 ~~~l~igDs~~di 179 (224)
T PRK14988 167 ERTLFIDDSEPIL 179 (224)
T ss_pred HHEEEEcCCHHHH
Confidence 7899999997544
No 82
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=82.57 E-value=3 Score=42.25 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=43.3
Q ss_pred EEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEec
Q 000959 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISR 1024 (1208)
Q Consensus 973 VKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSR 1024 (1208)
+.++||+.++|+.+. +-+.++|.|++...++..+++.+.... +|...+++.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~ 130 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVFD 130 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEEc
Confidence 678999999999997 469999999999999999999987554 677666543
No 83
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=81.94 E-value=3.8 Score=41.57 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=31.3
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCC
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPK 1013 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~ 1013 (1208)
+.++|+. -|++|.+ .|.|+|.|+..+..+..+++.+.-.
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 4677765 5777764 6999999999999999999887644
No 84
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=81.80 E-value=2.2 Score=46.97 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=56.9
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+.++||+.++|+.+.+ .|.++|.|++...++..+++.++-.+ +|. .+++.++.. ..+.. . ..++.+-..+|..
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~-~i~~~d~~~-~~Kp~-p-~~~~~~~~~~g~~~ 174 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFR-WIIGGDTLP-QKKPD-P-AALLFVMKMAGVPP 174 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCe-EEEecCCCC-CCCCC-c-HHHHHHHHHhCCCh
Confidence 5679999999999974 69999999999999999999876543 676 466654321 11110 0 0112222234655
Q ss_pred CcEEEEcCCCc
Q 000959 1051 SAVVIIDDSVR 1061 (1208)
Q Consensus 1051 srVVIIDDrpd 1061 (1208)
..+|+|+|+..
T Consensus 175 ~~~l~IGD~~~ 185 (272)
T PRK13223 175 SQSLFVGDSRS 185 (272)
T ss_pred hHEEEECCCHH
Confidence 78999999964
No 85
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=81.55 E-value=1.9 Score=50.81 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=60.4
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+.+.||+.+||+.|.+ .+.+.|.|++.+.|+..+++.++=.. ||.. |++.+++. ..++. ...+.+-+. .+|..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~-Iv~sddv~-~~KP~-Peifl~A~~-~lgl~P 289 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSV-IVAAEDVY-RGKPD-PEMFIYAAQ-LLNFIP 289 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceE-EEecCcCC-CCCCC-HHHHHHHHH-HcCCCc
Confidence 4578999999999965 59999999999999999999887554 7874 77665432 11211 112233333 35655
Q ss_pred CcEEEEcCCCccc
Q 000959 1051 SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1051 srVVIIDDrpdVW 1063 (1208)
+.+|+|+|+..-.
T Consensus 290 eecl~IGDS~~DI 302 (381)
T PLN02575 290 ERCIVFGNSNQTV 302 (381)
T ss_pred ccEEEEcCCHHHH
Confidence 7899999987544
No 86
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=81.53 E-value=2.2 Score=44.57 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=28.2
Q ss_pred HHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcC
Q 000959 979 IWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDP 1012 (1208)
Q Consensus 979 LdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP 1012 (1208)
..+.|+++.+ -+.++|.|.-....+..+++.|.-
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~ 55 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGL 55 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 5678888765 489999999999999999998763
No 87
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=81.47 E-value=2.4 Score=47.90 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=13.1
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
+.+++|||+||+++.
T Consensus 1 ~~~ifD~DGvL~~g~ 15 (321)
T TIGR01456 1 FGFAFDIDGVLFRGK 15 (321)
T ss_pred CEEEEeCcCceECCc
Confidence 468999999999885
No 88
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=81.27 E-value=1.2 Score=45.01 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=57.0
Q ss_pred EEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-C
Q 000959 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-s 1051 (1208)
+..-|+ .++|+.+.+.+.+.|-|++.+.+++.+++.+.=.+ +|. .|++.++.. ..++. +..+.+-+. .+|.+ +
T Consensus 87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd-~i~~~~~~~-~~KP~-p~~~~~~~~-~~~~~~~ 160 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFD-AVVAADDVQ-HHKPA-PDTFLRCAQ-LMGVQPT 160 (188)
T ss_pred CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-Hce-EEEehhhcc-CCCCC-hHHHHHHHH-HcCCCHH
Confidence 345576 48999998879999999999999999999886544 786 477766432 11211 111222233 35655 7
Q ss_pred cEEEEcCCCccc
Q 000959 1052 AVVIIDDSVRVW 1063 (1208)
Q Consensus 1052 rVVIIDDrpdVW 1063 (1208)
.+|+|+|++.-+
T Consensus 161 ~~l~igDs~~di 172 (188)
T PRK10725 161 QCVVFEDADFGI 172 (188)
T ss_pred HeEEEeccHhhH
Confidence 899999986544
No 89
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=80.74 E-value=3.4 Score=40.57 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=53.5
Q ss_pred EEEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
.....||+.++|+.+. +.+.++|.|++.+.++..+++.+ -..+|. .++..++.. .++. +..+.+=+. .+|..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f~-~i~~~~~~~--~Kp~-~~~~~~~~~-~~~~~ 134 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDYFD-LILGSDEFG--AKPE-PEIFLAALE-SLGLP 134 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhcCc-EEEecCCCC--CCcC-HHHHHHHHH-HcCCC
Confidence 3455699999999995 56999999999999999999984 234675 466655421 1211 111222222 23443
Q ss_pred CcEEEEcCCC
Q 000959 1051 SAVVIIDDSV 1060 (1208)
Q Consensus 1051 srVVIIDDrp 1060 (1208)
..+|+|+|+.
T Consensus 135 ~~~l~iGDs~ 144 (154)
T TIGR01549 135 PEVLHVGDNL 144 (154)
T ss_pred CCEEEEeCCH
Confidence 3789999984
No 90
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=80.31 E-value=1.5 Score=44.00 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=52.4
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+.+.||+.+||+.|.+ .|.+.|.|++ .++..+++.+.=.. +|.. ++..++... .+.. +..+.+=++ -++..
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~-v~~~~~~~~-~kp~-~~~~~~~~~-~~~~~~ 159 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDA-IVDADEVKE-GKPH-PETFLLAAE-LLGVSP 159 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCE-eeehhhCCC-CCCC-hHHHHHHHH-HcCCCH
Confidence 6789999999999975 5899999988 78888888765443 6765 554443211 1110 001122222 24555
Q ss_pred CcEEEEcCCCc
Q 000959 1051 SAVVIIDDSVR 1061 (1208)
Q Consensus 1051 srVVIIDDrpd 1061 (1208)
+.+|+|+|+..
T Consensus 160 ~~~v~IgD~~~ 170 (185)
T TIGR02009 160 NECVVFEDALA 170 (185)
T ss_pred HHeEEEeCcHh
Confidence 78999999863
No 91
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=79.83 E-value=3.7 Score=42.98 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.1
Q ss_pred ccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCC
Q 000959 976 RPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKG 1014 (1208)
Q Consensus 976 RPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~g 1014 (1208)
.|...+-|+++.+ -+.++|.|.-....+..+++.|+..+
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 4455566666654 48899999888888888888887664
No 92
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=79.65 E-value=3.1 Score=47.25 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=43.4
Q ss_pred EEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHh---cCCCceeeeeEEe
Q 000959 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL---DPKGVLFAGRVIS 1023 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiL---DP~gkLFs~RIiS 1023 (1208)
-+.+|||+.+||+.|.+ -+.++|+|+|...++..+++.+ ++...++.+++.-
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f 174 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDF 174 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEE
Confidence 37899999999999965 5999999999999999999953 3565677777654
No 93
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=79.46 E-value=3.9 Score=44.09 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=26.3
Q ss_pred cCHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHhcC
Q 000959 977 PGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 1012 (1208)
Q Consensus 977 PGLdEFLeeLSkl-YEIVIYTAGtreYAd~VLdiLDP 1012 (1208)
|...++|+++.+. ..++|.|.-+...+..+++.|.-
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 3467788887754 88888888887777777776653
No 94
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=79.42 E-value=2.3 Score=47.43 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=55.6
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeee-eEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAG-RVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~-RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
+++.||+.+||+++.+ .|.+.|.|++...++..+++.+.-. .+|.. .++..+++.. .++. +..+.+=+. .+|.+
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~-~KP~-p~~~~~a~~-~~~~~ 218 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQGLDVFAGDDVPK-KKPD-PDIYNLAAE-TLGVD 218 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccc-cccCceEEEeccccCC-CCCC-HHHHHHHHH-HhCcC
Confidence 5789999999999975 6999999999999999999866211 13331 2333333211 1110 001122222 35655
Q ss_pred -CcEEEEcCCCcccc
Q 000959 1051 -SAVVIIDDSVRVWP 1064 (1208)
Q Consensus 1051 -srVVIIDDrpdVW~ 1064 (1208)
..+|+|+|+..-+.
T Consensus 219 p~~~l~IGDs~~Di~ 233 (286)
T PLN02779 219 PSRCVVVEDSVIGLQ 233 (286)
T ss_pred hHHEEEEeCCHHhHH
Confidence 78999999975553
No 95
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=78.81 E-value=8.3 Score=42.80 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=60.8
Q ss_pred HHhhHHHHHhhhcCCCeEEEEeCCCceeecccCC--------CCCCc-hhhhhhhccccccCCCcceeeeeccceEEEEe
Q 000959 905 RTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFH--------EVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTKL 975 (1208)
Q Consensus 905 ~arrLe~q~rLLs~rKLTLVLDLDETLIHSt~~~--------evdP~-~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKL 975 (1208)
.+........+-..+|..+|||+|||++...... ..++. ..+|+... =..-
T Consensus 62 ~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~--------------------~apa 121 (229)
T TIGR01675 62 EAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKG--------------------AAPA 121 (229)
T ss_pred HHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcC--------------------CCCC
Confidence 3433333334456799999999999999765210 00110 01121100 0234
Q ss_pred ccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 000959 976 RPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1208)
Q Consensus 976 RPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRD 1025 (1208)
-|++.+|++++. +-++|++.|.-.........+.|--.|--.-.+++=|.
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecC
Confidence 689999999985 67999999998887766676666555521114565564
No 96
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=78.45 E-value=3.2 Score=42.64 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=51.9
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+.+.||+.++|++|.+ .|.++|.|++...+ ..+++.+.=. .+|.. |+..++.+ ..++. +..+.+-++ -+|.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~~ 177 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLL-EYFDF-VVTSYEVG-AEKPD-PKIFQEALE-RAGISP 177 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcH-Hhcce-EEeecccC-CCCCC-HHHHHHHHH-HcCCCh
Confidence 3678999999999986 49999999998764 6667665433 36764 55433322 11211 001222233 34665
Q ss_pred CcEEEEcCCC
Q 000959 1051 SAVVIIDDSV 1060 (1208)
Q Consensus 1051 srVVIIDDrp 1060 (1208)
..+|+|+|+.
T Consensus 178 ~~~~~IgD~~ 187 (203)
T TIGR02252 178 EEALHIGDSL 187 (203)
T ss_pred hHEEEECCCc
Confidence 7899999985
No 97
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=78.10 E-value=3.3 Score=42.54 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=41.4
Q ss_pred EEEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeE
Q 000959 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1021 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RI 1021 (1208)
.+.++||+.+||+.+.+.|.++|.|++.+.|++.+++.++-.. +|.+++
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~ 114 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSL 114 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceE
Confidence 3667899999999998779999999999999999999877543 666554
No 98
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=77.73 E-value=4.4 Score=43.42 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=27.4
Q ss_pred cCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCC
Q 000959 977 PGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPK 1013 (1208)
Q Consensus 977 PGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~ 1013 (1208)
|...+.|+++.+ -+.++|-|.-....+..+++.|...
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 445566777664 4889999988888888888777654
No 99
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=77.73 E-value=3.3 Score=46.67 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=21.7
Q ss_pred hHHHHHhhhcCCCeEEEEeCCCceeecc
Q 000959 908 RLEEQKKMFSARKLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 908 rLe~q~rLLs~rKLTLVLDLDETLIHSt 935 (1208)
.+.++-+.-+.++..+|||||||++..+
T Consensus 67 ~~d~~~k~~k~K~~aVvlDlDETvLdNs 94 (274)
T COG2503 67 ALDTQAKKKKGKKKAVVLDLDETVLDNS 94 (274)
T ss_pred HHHhhhccccCCCceEEEecchHhhcCc
Confidence 3444555667888899999999999865
No 100
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=77.68 E-value=4.7 Score=44.00 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhh-cccEEEEEc
Q 000959 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYT 996 (1208)
Q Consensus 918 ~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLS-klYEIVIYT 996 (1208)
+.++.+++||||||++.... + -|...+-|+++. +-..++|.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~--i-----------------------------------~~~~~~ai~~l~~~Gi~~viaT 47 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY--D-----------------------------------WQPAAPWLTRLREAQVPVILCS 47 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc--C-----------------------------------cHHHHHHHHHHHHcCCeEEEEc
Confidence 45678899999999986321 1 112333455554 346777777
Q ss_pred CCcHHHHHHHHHHhcC
Q 000959 997 MGNKLYATEMAKVLDP 1012 (1208)
Q Consensus 997 AGtreYAd~VLdiLDP 1012 (1208)
.-....+..+++.|+.
T Consensus 48 GR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 48 SKTAAEMLPLQQTLGL 63 (271)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 6666666667776654
No 101
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=77.14 E-value=4 Score=44.41 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=58.3
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCC-C
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGr-D 1050 (1208)
+.+-||+.++|+.|.+ .|.+.|-|++.+.++..+++.+.-.+ +|.+.|++.++.. ..+++ +..+.+-++ -+|. .
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~-~~KP~-p~~~~~a~~-~l~~~~ 175 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVP-AGRPY-PWMALKNAI-ELGVYD 175 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCC-CCCCC-hHHHHHHHH-HcCCCC
Confidence 5678999999999974 69999999999999999998765444 4434577665432 11211 112233333 2454 3
Q ss_pred -CcEEEEcCCCccc
Q 000959 1051 -SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1051 -srVVIIDDrpdVW 1063 (1208)
+.+|+|+|++.=.
T Consensus 176 ~~e~l~IGDs~~Di 189 (267)
T PRK13478 176 VAACVKVDDTVPGI 189 (267)
T ss_pred CcceEEEcCcHHHH
Confidence 6799999997433
No 102
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=77.04 E-value=4.6 Score=43.48 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhcCceEEeee-----eccCCCCCCCCchHHHHHHhcCCEEeccc-----C------CCccEEEeCCCC
Q 000959 1132 VRNILAAEQRKILAGCRIVFSR-----VFPVGEANPHLHPLWQTAEQFGAVCTKHI-----D------DQVTHVVANSLG 1195 (1208)
Q Consensus 1132 VR~ILreiRrkVL~GC~IVFSG-----VfPlg~anPe~h~LWrLAEsFGAtct~sI-----d------~~VTHVVAa~~G 1195 (1208)
+..+..+++.....++.++.|+ ++|.+. -+.+.+-.+++.+|-....-+ . ..+-|=||-.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gv--sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA 240 (270)
T PRK10513 163 LDAAIARIPAEVKERYTVLKSAPYFLEILDKRV--NKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA 240 (270)
T ss_pred HHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCC--ChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc
Confidence 3444445554444566777665 555543 124567788888885422111 1 346677887888
Q ss_pred cHHHHHHH
Q 000959 1196 TDKVLLVV 1203 (1208)
Q Consensus 1196 TeKVr~A~ 1203 (1208)
++.++.+.
T Consensus 241 ~~~vK~~A 248 (270)
T PRK10513 241 IPSVKEVA 248 (270)
T ss_pred cHHHHHhc
Confidence 88877653
No 103
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=76.73 E-value=4 Score=43.63 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=43.5
Q ss_pred EEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEe
Q 000959 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1023 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiS 1023 (1208)
+.++||+.+||+.+.+.+.++|-|++...|+.++++.|.-+. +|.+++..
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~ 116 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEI 116 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEE
Confidence 578999999999998888999999999999999999987653 77766654
No 104
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=76.64 E-value=5.1 Score=39.90 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=40.9
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEE
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIi 1022 (1208)
+.++||+.++|+.+.+ .+.++|.|++.+.|+..+++.+.-. .+|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEE
Confidence 5689999999999964 5999999999999999999988654 36666554
No 105
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=76.06 E-value=4.1 Score=42.01 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=29.3
Q ss_pred ccCHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHh
Q 000959 976 RPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 1010 (1208)
Q Consensus 976 RPGLdEFLeeLSkl-YEIVIYTAGtreYAd~VLdiL 1010 (1208)
.|.+.+.|+++.+. ..++|-|.....++..+++.+
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 46778888888865 899999999999999988865
No 106
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=75.72 E-value=7.6 Score=41.60 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=13.2
Q ss_pred CeEEEEeCCCceeecc
Q 000959 920 KLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt 935 (1208)
.+.+++||||||+...
T Consensus 3 ~kli~~DlDGTLl~~~ 18 (272)
T PRK10530 3 YRVIALDLDGTLLTPK 18 (272)
T ss_pred ccEEEEeCCCceECCC
Confidence 3578999999999764
No 107
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=75.59 E-value=3.5 Score=43.54 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=35.1
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHh
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL 1010 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiL 1010 (1208)
+.++||+.+||+.+.+ -+.++|.|++.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 6899999999999975 5999999999999999999875
No 108
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=75.35 E-value=4.1 Score=42.07 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=54.4
Q ss_pred EeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-C
Q 000959 974 KLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1208)
Q Consensus 974 KLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-s 1051 (1208)
+..|+..++|+.|.+ -+.+.|.|++.+.++..+++.+.=. .+|.. +++.++.. . +.. +..+.+-++ -+|.+ +
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~~-~~~~~~~~-~-KP~-p~~~~~~~~-~~~~~~~ 179 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILFPV-QIWMEDCP-P-KPN-PEPLILAAK-ALGVEAC 179 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhCCE-EEeecCCC-C-CcC-HHHHHHHHH-HhCcCcc
Confidence 345567999999985 4999999999999999999988655 37764 56554322 1 211 111222233 24555 6
Q ss_pred cEEEEcCCC
Q 000959 1052 AVVIIDDSV 1060 (1208)
Q Consensus 1052 rVVIIDDrp 1060 (1208)
.+|+|+|++
T Consensus 180 ~~i~vGD~~ 188 (197)
T TIGR01548 180 HAAMVGDTV 188 (197)
T ss_pred cEEEEeCCH
Confidence 899999975
No 109
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=74.67 E-value=4.4 Score=42.19 Aligned_cols=84 Identities=15% Similarity=0.085 Sum_probs=57.4
Q ss_pred EEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCC-CceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~-gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
+.+.||+.+||+.|. +.|.+.|.|++.+.++..+++.++-. +.+|.. +++.++-. ..+.. +..+.+=+. .+|..
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~-i~~~~~~~-~~KP~-p~~~~~a~~-~~~~~ 161 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDA-VVCPSDVA-AGRPA-PDLILRAME-LTGVQ 161 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCE-EEcCCcCC-CCCCC-HHHHHHHHH-HcCCC
Confidence 478999999999996 56999999999999999999988754 257864 66554321 11110 001122233 24542
Q ss_pred --CcEEEEcCCC
Q 000959 1051 --SAVVIIDDSV 1060 (1208)
Q Consensus 1051 --srVVIIDDrp 1060 (1208)
+.+|+|+|++
T Consensus 162 ~~~~~~~igD~~ 173 (220)
T TIGR03351 162 DVQSVAVAGDTP 173 (220)
T ss_pred ChhHeEEeCCCH
Confidence 6899999996
No 110
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=74.54 E-value=2.1 Score=44.41 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=54.6
Q ss_pred EEEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCC
Q 000959 971 MWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 1049 (1208)
Q Consensus 971 ~yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGr 1049 (1208)
++..++||+.++|+.+.+ .|.++|.|++.+.....++....--..+|.. +++-+++. ..+++ +..|.+-++ .+|.
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~-v~~s~~~~-~~KP~-p~~~~~~~~-~~~~ 156 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADH-IYLSQDLG-MRKPE-ARIYQHVLQ-AEGF 156 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCE-EEEecccC-CCCCC-HHHHHHHHH-HcCC
Confidence 346789999999999975 5999999999988766544321111346754 55544432 12221 112222233 3566
Q ss_pred C-CcEEEEcCCCcc
Q 000959 1050 E-SAVVIIDDSVRV 1062 (1208)
Q Consensus 1050 D-srVVIIDDrpdV 1062 (1208)
. +.+|+|||++.-
T Consensus 157 ~p~~~l~vgD~~~d 170 (199)
T PRK09456 157 SAADAVFFDDNADN 170 (199)
T ss_pred ChhHeEEeCCCHHH
Confidence 5 789999999743
No 111
>PLN02940 riboflavin kinase
Probab=74.08 E-value=2.6 Score=48.99 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=55.9
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHH-HhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAK-VLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLd-iLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD 1050 (1208)
+.+.||+.++|+.|.+ .+.+.|-|++.+.++..+++ .++= ..+|.. |++.+++.. .+.+ +..+.+-++ .+|..
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl-~~~Fd~-ii~~d~v~~-~KP~-p~~~~~a~~-~lgv~ 166 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGW-KESFSV-IVGGDEVEK-GKPS-PDIFLEAAK-RLNVE 166 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccCh-HhhCCE-EEehhhcCC-CCCC-HHHHHHHHH-HcCCC
Confidence 5678999999999965 59999999999999998876 4443 247765 666554321 1110 011222233 24554
Q ss_pred -CcEEEEcCCCc
Q 000959 1051 -SAVVIIDDSVR 1061 (1208)
Q Consensus 1051 -srVVIIDDrpd 1061 (1208)
..+|+|+|+..
T Consensus 167 p~~~l~VGDs~~ 178 (382)
T PLN02940 167 PSNCLVIEDSLP 178 (382)
T ss_pred hhHEEEEeCCHH
Confidence 78999999974
No 112
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=73.90 E-value=6 Score=42.50 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=76.5
Q ss_pred HhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcc-cE
Q 000959 913 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FE 991 (1208)
Q Consensus 913 ~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSkl-YE 991 (1208)
..|..++...+|+|||+|||-=. +| ..-|-+++.|.++.+. --
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd-----~~-------------------------------~~tpe~~~W~~e~k~~gi~ 64 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWD-----NP-------------------------------DATPELRAWLAELKEAGIK 64 (175)
T ss_pred HHHHHcCCcEEEEeccCceeccc-----CC-------------------------------CCCHHHHHHHHHHHhcCCE
Confidence 56778899999999999999432 11 0246777888888765 89
Q ss_pred EEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCC--cccccCCC
Q 000959 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV--RVWPHNKL 1068 (1208)
Q Consensus 992 IVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrp--dVW~~qpd 1068 (1208)
++|.++.++.-+..++..||-.. |+ +-- ..+. ..+-|-|. .++.+ +.||+|-|+- ++...|..
T Consensus 65 v~vvSNn~e~RV~~~~~~l~v~f------i~-~A~--KP~~----~~fr~Al~-~m~l~~~~vvmVGDqL~TDVlggnr~ 130 (175)
T COG2179 65 VVVVSNNKESRVARAAEKLGVPF------IY-RAK--KPFG----RAFRRALK-EMNLPPEEVVMVGDQLFTDVLGGNRA 130 (175)
T ss_pred EEEEeCCCHHHHHhhhhhcCCce------ee-ccc--CccH----HHHHHHHH-HcCCChhHEEEEcchhhhhhhccccc
Confidence 99999999999999999887543 22 211 1110 01223333 34555 7899999975 67766543
Q ss_pred --CeEEecccc
Q 000959 1069 --NLIVVERYT 1077 (1208)
Q Consensus 1069 --NlI~IkpY~ 1077 (1208)
-.|.|+|-.
T Consensus 131 G~~tIlV~Pl~ 141 (175)
T COG2179 131 GMRTILVEPLV 141 (175)
T ss_pred CcEEEEEEEec
Confidence 456777753
No 113
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=73.48 E-value=5.6 Score=44.23 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=59.8
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhcc---ccccCCCcceee--e---eccceEEEEeccCHHHHHHHhhc-c
Q 000959 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKE---EQDREKPHRHLF--R---FPHMGMWTKLRPGIWTFLERASK-L 989 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~e---e~D~~~P~~~lF--r---lp~~~~yVKLRPGLdEFLeeLSk-l 989 (1208)
....+|+|+|+|||-.... -..+....|...+- ..+...+....| . +....-+...-|.+.+|++.+.+ .
T Consensus 19 ~~tLvvfDiDdTLi~~~~~-lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~ 97 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQP-LGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKG 97 (252)
T ss_pred CCeEEEEEcchhhhcCccc-cCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCC
Confidence 6788999999999976521 11121112211000 000000111111 0 01123356678999999999984 5
Q ss_pred cEEEEEcCCcHHHHHHHHHHhcCCCceeeee
Q 000959 990 FEMHLYTMGNKLYATEMAKVLDPKGVLFAGR 1020 (1208)
Q Consensus 990 YEIVIYTAGtreYAd~VLdiLDP~gkLFs~R 1020 (1208)
.-++.+|+....|...-++.|=--|--|..+
T Consensus 98 ~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~ 128 (252)
T PF11019_consen 98 IPVIALTARGPNMEDWTLRELKSLGIDFSSS 128 (252)
T ss_pred CcEEEEcCCChhhHHHHHHHHHHCCCCcccc
Confidence 9999999999999999888775455445443
No 114
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=73.34 E-value=8.4 Score=40.32 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=38.2
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEcCCc
Q 000959 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 999 (1208)
Q Consensus 921 LTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYTAGt 999 (1208)
+.|++|||+||+.... . +.|...+-|+++.+ -..++|-|.-.
T Consensus 4 kli~~DlDGTLl~~~~--~-----------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~ 46 (230)
T PRK01158 4 KAIAIDIDGTITDKDR--R-----------------------------------LSLKAVEAIRKAEKLGIPVILATGNV 46 (230)
T ss_pred eEEEEecCCCcCCCCC--c-----------------------------------cCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 5789999999996531 1 23444555666653 46777888777
Q ss_pred HHHHHHHHHHhcCCC
Q 000959 1000 KLYATEMAKVLDPKG 1014 (1208)
Q Consensus 1000 reYAd~VLdiLDP~g 1014 (1208)
...+..+++.|...+
T Consensus 47 ~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 47 LCFARAAAKLIGTSG 61 (230)
T ss_pred hHHHHHHHHHhCCCC
Confidence 777777777776543
No 115
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=73.28 E-value=6.6 Score=42.39 Aligned_cols=35 Identities=20% Similarity=0.064 Sum_probs=27.3
Q ss_pred CHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHhcC
Q 000959 978 GIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 1012 (1208)
Q Consensus 978 GLdEFLeeLSkl-YEIVIYTAGtreYAd~VLdiLDP 1012 (1208)
...++|+++.+. +.++|.|.-....+..+++.|+.
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 357788887764 88999998888888888887763
No 116
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=73.06 E-value=4.5 Score=45.07 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=55.0
Q ss_pred EEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+.+.||+.++|+.|. +.+.+.|.|++.+.++..+++.++-.. +|.. +++.++. ... +..+.+=+. .++.+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~-vi~~~~~---~~k--~~~~~~~l~-~~~~~p 212 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSV-VQAGTPI---LSK--RRALSQLVA-REGWQP 212 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEE-EEecCCC---CCC--HHHHHHHHH-HhCcCh
Confidence 566899999999997 568999999999999999999987654 6764 5543321 000 001111112 13444
Q ss_pred CcEEEEcCCCc
Q 000959 1051 SAVVIIDDSVR 1061 (1208)
Q Consensus 1051 srVVIIDDrpd 1061 (1208)
+.+|+|+|+..
T Consensus 213 ~~~l~IGDs~~ 223 (273)
T PRK13225 213 AAVMYVGDETR 223 (273)
T ss_pred hHEEEECCCHH
Confidence 68999999963
No 117
>PLN02954 phosphoserine phosphatase
Probab=71.85 E-value=7.5 Score=40.60 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=40.9
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCC-ceeeeeEE
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRVI 1022 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~g-kLFs~RIi 1022 (1208)
..++||+.+||+.+.+ .+.++|-|++.+.|++.+++.+.-.. .+|..++.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~ 134 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQIL 134 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEE
Confidence 5688999999999965 58999999999999999999876432 46765543
No 118
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=71.13 E-value=3.1 Score=44.63 Aligned_cols=84 Identities=19% Similarity=0.153 Sum_probs=62.3
Q ss_pred EEeccCHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSkl-YEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
++..||+.+||+.|... .-+.+-|.+.+..+..+++.+.-.. +|...+. .++... .++ .+..|.+-.. .||.+
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~-~~dv~~-~KP-~Pd~yL~Aa~-~Lgv~P 159 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVT-ADDVAR-GKP-APDIYLLAAE-RLGVDP 159 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhcc-HHHHhc-CCC-CCHHHHHHHH-HcCCCh
Confidence 68999999999999987 9999999999999999998887665 7887555 443221 111 1224555555 36766
Q ss_pred CcEEEEcCCCc
Q 000959 1051 SAVVIIDDSVR 1061 (1208)
Q Consensus 1051 srVVIIDDrpd 1061 (1208)
..+|+|+|++.
T Consensus 160 ~~CvviEDs~~ 170 (221)
T COG0637 160 EECVVVEDSPA 170 (221)
T ss_pred HHeEEEecchh
Confidence 89999999864
No 119
>PHA02597 30.2 hypothetical protein; Provisional
Probab=70.89 E-value=3.7 Score=42.18 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=56.3
Q ss_pred EEEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCC---ceeeeeEEecCCCCCCCCCCCCCCccccCCCccC
Q 000959 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKG---VLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1048 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~g---kLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLG 1048 (1208)
.++..||+.++|++|.+.|.+++-|++.......+.+.+.-.+ .+|.+ +++.++. .+. +..+.+-+. .+|
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~-i~~~~~~----~~k-p~~~~~a~~-~~~ 144 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSE-VLMCGHD----ESK-EKLFIKAKE-KYG 144 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccE-EEEeccC----ccc-HHHHHHHHH-HhC
Confidence 3678999999999999888888888877665555665553221 25543 5544332 110 011112222 345
Q ss_pred CCCcEEEEcCCCcccccCCCC--eEEec
Q 000959 1049 MESAVVIIDDSVRVWPHNKLN--LIVVE 1074 (1208)
Q Consensus 1049 rDsrVVIIDDrpdVW~~qpdN--lI~Ik 1074 (1208)
.+.+|+|||+..-...-... +|.+-
T Consensus 145 -~~~~v~vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 145 -DRVVCFVDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred -CCcEEEeCCCHHHHHHHHHHHcCCcEE
Confidence 56799999998665433344 55443
No 120
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=70.85 E-value=5.2 Score=43.55 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=54.7
Q ss_pred EEEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCC--CceeeeeEEecCCCCCCCCCCCCCCccccCCCccC
Q 000959 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPK--GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1048 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~--gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLG 1048 (1208)
...+.|++.++|+++. +.|.++|||++...+...+++.++-. ..+|.. +|... .+ .+. +...|.+=++ -+|
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~-~fd~~-~g--~KP-~p~~y~~i~~-~lg 166 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSG-YFDTT-VG--LKT-EAQSYVKIAG-QLG 166 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcce-EEEeC-cc--cCC-CHHHHHHHHH-HhC
Confidence 3568999999999996 47999999999999999888775311 124554 33211 11 111 1112333333 246
Q ss_pred CC-CcEEEEcCCCccc
Q 000959 1049 ME-SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1049 rD-srVVIIDDrpdVW 1063 (1208)
.. +.+++|+|+..-.
T Consensus 167 v~p~e~lfVgDs~~Di 182 (220)
T TIGR01691 167 SPPREILFLSDIINEL 182 (220)
T ss_pred cChhHEEEEeCCHHHH
Confidence 55 7899999996433
No 121
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=70.08 E-value=6.3 Score=46.61 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=55.9
Q ss_pred EEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCCC
Q 000959 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 1051 (1208)
Q Consensus 973 VKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrDs 1051 (1208)
+.+.||+.++|++|. +.|.+.|.|++.+.|+..+++.++=.. +|.. +++.++... .+ .+..+.+-+.+ ++ .+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~-i~~~d~v~~--~~-kP~~~~~al~~-l~-~~ 401 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTE-TFSIEQINS--LN-KSDLVKSILNK-YD-IK 401 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcce-eEecCCCCC--CC-CcHHHHHHHHh-cC-cc
Confidence 577899999999996 569999999999999999999887654 7765 665443210 11 01122222322 22 25
Q ss_pred cEEEEcCCCc
Q 000959 1052 AVVIIDDSVR 1061 (1208)
Q Consensus 1052 rVVIIDDrpd 1061 (1208)
.+|+|.|++.
T Consensus 402 ~~v~VGDs~~ 411 (459)
T PRK06698 402 EAAVVGDRLS 411 (459)
T ss_pred eEEEEeCCHH
Confidence 7999999874
No 122
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=69.74 E-value=9.1 Score=39.83 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.1
Q ss_pred EEEeCCCceeecc
Q 000959 923 LVLDLDHTLLNSA 935 (1208)
Q Consensus 923 LVLDLDETLIHSt 935 (1208)
+++|||+||+++.
T Consensus 1 i~~DlDGTLl~~~ 13 (225)
T TIGR01482 1 IASDIDGTLTDPN 13 (225)
T ss_pred CeEeccCccCCCC
Confidence 5899999999764
No 123
>PLN02645 phosphoglycolate phosphatase
Probab=69.60 E-value=9.2 Score=43.17 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=13.2
Q ss_pred CeEEEEeCCCceeecc
Q 000959 920 KLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt 935 (1208)
-.++++|+|+||++..
T Consensus 28 ~~~~~~D~DGtl~~~~ 43 (311)
T PLN02645 28 VETFIFDCDGVIWKGD 43 (311)
T ss_pred CCEEEEeCcCCeEeCC
Confidence 4578999999999864
No 124
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=69.01 E-value=3.1 Score=43.17 Aligned_cols=86 Identities=26% Similarity=0.163 Sum_probs=49.4
Q ss_pred EEEeccCHHHHHHHhhc-ccEEEEEcCCcHHH--HHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccC
Q 000959 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLY--ATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1048 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreY--Ad~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLG 1048 (1208)
.+.+.||+.+||+.|.+ .|.++|.|++...+ +...+..++- ..+|.. ++.-++.. ..+++ +..|.+-++ .+|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l-~~~fd~-v~~s~~~~-~~KP~-p~~~~~~~~-~~g 166 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDI-MALFDA-VVESCLEG-LRKPD-PRIYQLMLE-RLG 166 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhh-HhhCCE-EEEeeecC-CCCCC-HHHHHHHHH-HcC
Confidence 36789999999999985 59999999987655 2222221211 236754 55333221 11211 111222233 356
Q ss_pred CC-CcEEEEcCCCcc
Q 000959 1049 ME-SAVVIIDDSVRV 1062 (1208)
Q Consensus 1049 rD-srVVIIDDrpdV 1062 (1208)
.. +.+|+|||+..-
T Consensus 167 ~~~~~~l~i~D~~~d 181 (211)
T TIGR02247 167 VAPEECVFLDDLGSN 181 (211)
T ss_pred CCHHHeEEEcCCHHH
Confidence 55 678888998643
No 125
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=68.60 E-value=10 Score=41.19 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHhhhcCceEEeee-----eccCCCCCCCCchHHHHHHhcCCEEeccc-----C------CCccEEEeCCC
Q 000959 1131 DVRNILAAEQRKILAGCRIVFSR-----VFPVGEANPHLHPLWQTAEQFGAVCTKHI-----D------DQVTHVVANSL 1194 (1208)
Q Consensus 1131 DVR~ILreiRrkVL~GC~IVFSG-----VfPlg~anPe~h~LWrLAEsFGAtct~sI-----d------~~VTHVVAa~~ 1194 (1208)
++..+...++...-..+.+++|+ ++|.+.. +.+.+-.+++.+|-....-+ . ..+.|=||-.+
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~g~s--Kg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 231 (272)
T PRK15126 154 DLTRLQIQLNEALGERAHLCFSATDCLEVLPVGCN--KGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGN 231 (272)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCcEEEeecCCCC--hHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccC
Confidence 34444444444333446666664 5555431 24568888999995322211 1 34678888888
Q ss_pred CcHHHHHHH
Q 000959 1195 GTDKVLLVV 1203 (1208)
Q Consensus 1195 GTeKVr~A~ 1203 (1208)
+.+.++.+.
T Consensus 232 a~~~vK~~A 240 (272)
T PRK15126 232 AMPQLRAEL 240 (272)
T ss_pred ChHHHHHhC
Confidence 888888764
No 126
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=68.01 E-value=7.3 Score=42.80 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
++++|||+||++..
T Consensus 3 ~i~~D~DGtl~~~~ 16 (257)
T TIGR01458 3 GVLLDISGVLYISD 16 (257)
T ss_pred EEEEeCCCeEEeCC
Confidence 68999999999874
No 127
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=67.82 E-value=14 Score=38.56 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=37.3
Q ss_pred cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-CcEEEEcCCCc
Q 000959 988 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1061 (1208)
Q Consensus 988 klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-srVVIIDDrpd 1061 (1208)
+.+.+.|.|+....++..+++.|.-.. +|.+ +. .+. ..++.+-.-+|.+ ..+++|-|+..
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~g--------~~-~k~----~~l~~~~~~~gl~~~ev~~VGDs~~ 123 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LYQG--------QS-NKL----IAFSDLLEKLAIAPEQVAYIGDDLI 123 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-eecC--------CC-cHH----HHHHHHHHHhCCCHHHEEEECCCHH
Confidence 679999999999999999999875332 3321 10 000 1122222234655 67999987753
No 128
>PRK10444 UMP phosphatase; Provisional
Probab=67.44 E-value=9 Score=42.22 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=12.3
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
.+++|||+||++..
T Consensus 3 ~v~~DlDGtL~~~~ 16 (248)
T PRK10444 3 NVICDIDGVLMHDN 16 (248)
T ss_pred EEEEeCCCceEeCC
Confidence 67899999999875
No 129
>PLN03017 trehalose-phosphatase
Probab=66.83 E-value=9.6 Score=45.00 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=44.7
Q ss_pred HhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEE
Q 000959 913 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 992 (1208)
Q Consensus 913 ~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEI 992 (1208)
..+...+++.|+||+||||+-=.. +|. -..+-|.+.+-|++|.+.+.+
T Consensus 104 ~~~~~~k~~llflD~DGTL~Piv~----~p~----------------------------~a~i~~~~~~aL~~La~~~~v 151 (366)
T PLN03017 104 MEASRGKQIVMFLDYDGTLSPIVD----DPD----------------------------KAFMSSKMRRTVKKLAKCFPT 151 (366)
T ss_pred HHHhcCCCeEEEEecCCcCcCCcC----Ccc----------------------------cccCCHHHHHHHHHHhcCCcE
Confidence 445678999999999999992211 111 012457788889999999999
Q ss_pred EEEcCCcHHHHHHHH
Q 000959 993 HLYTMGNKLYATEMA 1007 (1208)
Q Consensus 993 VIYTAGtreYAd~VL 1007 (1208)
+|-|--...-+..+.
T Consensus 152 aIvSGR~~~~l~~~~ 166 (366)
T PLN03017 152 AIVTGRCIDKVYNFV 166 (366)
T ss_pred EEEeCCCHHHHHHhh
Confidence 999976666655553
No 130
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=66.83 E-value=8.1 Score=42.80 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=39.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc--ccEEEEEc
Q 000959 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHLYT 996 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk--lYEIVIYT 996 (1208)
.++.|++|+|+||++... +|.+ ..+-|.+.+-|+.|.+ ...++|.|
T Consensus 13 ~~~li~~D~DGTLl~~~~----~p~~----------------------------~~i~~~~~~~L~~L~~~~g~~v~i~S 60 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKP----HPDQ----------------------------VVVPDNILQGLQLLATANDGALALIS 60 (266)
T ss_pred CCEEEEEecCCCCCCCCC----Cccc----------------------------ccCCHHHHHHHHHHHhCCCCcEEEEe
Confidence 368899999999997642 2211 1124778888888876 46677777
Q ss_pred CCcHHHHHHHHHHh
Q 000959 997 MGNKLYATEMAKVL 1010 (1208)
Q Consensus 997 AGtreYAd~VLdiL 1010 (1208)
--...-+..+++.+
T Consensus 61 GR~~~~~~~~~~~~ 74 (266)
T PRK10187 61 GRSMVELDALAKPY 74 (266)
T ss_pred CCCHHHHHHhcCcc
Confidence 66666555555433
No 131
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=66.80 E-value=10 Score=39.05 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=26.0
Q ss_pred eccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHh
Q 000959 975 LRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL 1010 (1208)
Q Consensus 975 LRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiL 1010 (1208)
..|++.++++++.+ -|.+++.|.-...-+....++|
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l 64 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL 64 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH
Confidence 47999999999875 5888888877766665333333
No 132
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=66.79 E-value=5.4 Score=40.02 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=50.6
Q ss_pred EEeccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-
Q 000959 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1208)
Q Consensus 973 VKLRPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD- 1050 (1208)
+++.||+.++|+.|. ..|.+.|-|++. .+..+++.+.-. .+|.. ++..++-. ..+. .+..+.+-++ .++.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f~~-~~~~~~~~-~~kp-~p~~~~~~~~-~~~~~~ 158 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYFDA-IVDPAEIK-KGKP-DPEIFLAAAE-GLGVSP 158 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhCcE-EEehhhcC-CCCC-ChHHHHHHHH-HcCCCH
Confidence 467899999999997 559999999864 356677776544 36764 55443211 1111 0111222233 24555
Q ss_pred CcEEEEcCCCc
Q 000959 1051 SAVVIIDDSVR 1061 (1208)
Q Consensus 1051 srVVIIDDrpd 1061 (1208)
+.+|+|+|++.
T Consensus 159 ~~~v~vgD~~~ 169 (185)
T TIGR01990 159 SECIGIEDAQA 169 (185)
T ss_pred HHeEEEecCHH
Confidence 78999999863
No 133
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=66.51 E-value=1.9 Score=43.13 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=52.2
Q ss_pred EEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-C
Q 000959 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-s 1051 (1208)
+.++||+.++|+. |.|.|++.+.|...+++.+.-. .+|.. +++.++.. ..++. +..|.+-++ .+|.. +
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-v~~~~~~~-~~KP~-p~~f~~~~~-~~~~~p~ 157 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYFDR-AFSVDTVR-AYKPD-PVVYELVFD-TVGLPPD 157 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHHhh-hccHhhcC-CCCCC-HHHHHHHHH-HHCCCHH
Confidence 5689999999994 7899999999999999987543 36764 66554322 12221 112233333 35666 7
Q ss_pred cEEEEcCCC
Q 000959 1052 AVVIIDDSV 1060 (1208)
Q Consensus 1052 rVVIIDDrp 1060 (1208)
.+|+|+|+.
T Consensus 158 ~~l~vgD~~ 166 (175)
T TIGR01493 158 RVLMVAAHQ 166 (175)
T ss_pred HeEeEecCh
Confidence 899999984
No 134
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=64.80 E-value=8.1 Score=43.20 Aligned_cols=84 Identities=25% Similarity=0.309 Sum_probs=56.0
Q ss_pred EEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCC----CCccccCC---C
Q 000959 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDER----VPKSKDLE---G 1045 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er----~~yvKDLs---r 1045 (1208)
+|.-|-|++||-.|.+.+ .+|||+|.+..|..+++.|--.. .|.+ |++-+ ..+..+. .+..+-.. +
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFeg-ii~~e----~~np~~~~~vcKP~~~afE~a~k 171 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEG-IICFE----TLNPIEKTVVCKPSEEAFEKAMK 171 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccc-eeEee----ccCCCCCceeecCCHHHHHHHHH
Confidence 777888999999999888 99999999999999999997654 5665 44221 1111000 01111111 1
Q ss_pred ccCCC--CcEEEEcCCCccc
Q 000959 1046 VLGME--SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1046 VLGrD--srVVIIDDrpdVW 1063 (1208)
+.|-+ .+++.+||+...-
T Consensus 172 ~agi~~p~~t~FfDDS~~NI 191 (244)
T KOG3109|consen 172 VAGIDSPRNTYFFDDSERNI 191 (244)
T ss_pred HhCCCCcCceEEEcCchhhH
Confidence 34544 7899999986544
No 135
>PRK10976 putative hydrolase; Provisional
Probab=64.44 E-value=14 Score=39.88 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhcCceEEeee-----eccCCCCCCCCchHHHHHHhcCCEEec-----ccC------CCccEEEeCCCCc
Q 000959 1133 RNILAAEQRKILAGCRIVFSR-----VFPVGEANPHLHPLWQTAEQFGAVCTK-----HID------DQVTHVVANSLGT 1196 (1208)
Q Consensus 1133 R~ILreiRrkVL~GC~IVFSG-----VfPlg~anPe~h~LWrLAEsFGAtct~-----sId------~~VTHVVAa~~GT 1196 (1208)
..+...++...-.++.+++|+ +.|.+.. +.+.+..+++.+|-.... |=. ..+-|=||-.+++
T Consensus 158 ~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvs--Kg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~ 235 (266)
T PRK10976 158 LPLEQAINARWGDRVNVSFSTLTCLEVMAGGVS--KGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAH 235 (266)
T ss_pred HHHHHHHHHHhCCcEEEEEeCCceEEEEcCCCC--hHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCc
Confidence 334444444333456666664 3454431 235678889999854221 111 2356778888888
Q ss_pred HHHHHHH
Q 000959 1197 DKVLLVV 1203 (1208)
Q Consensus 1197 eKVr~A~ 1203 (1208)
+.++.+.
T Consensus 236 ~~vK~~A 242 (266)
T PRK10976 236 QRLKDLL 242 (266)
T ss_pred HHHHHhC
Confidence 8887763
No 136
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=61.87 E-value=4.5 Score=42.66 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=26.1
Q ss_pred EEeccCHHHHHHHhhcccEEEEEcCCcHHH
Q 000959 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLY 1002 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSklYEIVIYTAGtreY 1002 (1208)
.+.-||.++-+++|-+.|++||-|+++--|
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp 96 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHP 96 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCc
Confidence 667899999999999999999999995433
No 137
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=60.27 E-value=14 Score=40.76 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=12.3
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++|||+||++..
T Consensus 3 ~~~~~D~DGtl~~~~ 17 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE 17 (279)
T ss_pred cEEEEeCCCceEcCC
Confidence 368899999998763
No 138
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=60.00 E-value=14 Score=38.00 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=41.5
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEE
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIi 1022 (1208)
.+++|++.++|+.+.+ -+.++|.|++...|+..+++.+.-+. +|..++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 4689999999999865 69999999999999999999887654 6776654
No 139
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=59.55 E-value=43 Score=36.29 Aligned_cols=108 Identities=21% Similarity=0.266 Sum_probs=65.8
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhh-cccEEEEEcCC
Q 000959 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMG 998 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLS-klYEIVIYTAG 998 (1208)
..+|+||.||||+--.. + .+.. + -...+.||+.+=|..+. ..|-++|+|+.
T Consensus 5 ~k~lflDRDGtin~d~~-----~----yv~~---------------~----~~~~~~~g~i~al~~l~~~gy~lVvvTNQ 56 (181)
T COG0241 5 QKALFLDRDGTINIDKG-----D----YVDS---------------L----DDFQFIPGVIPALLKLQRAGYKLVVVTNQ 56 (181)
T ss_pred CcEEEEcCCCceecCCC-----c----ccCc---------------H----HHhccCccHHHHHHHHHhCCCeEEEEECC
Confidence 67899999999994321 0 1100 0 01346899999999985 56999999992
Q ss_pred ----c--------HHHHHHHHHHhcCCCceeeeeEEecCC---CCCCCCCCCCCCccccCCCcc---CCC-CcEEEEcCC
Q 000959 999 ----N--------KLYATEMAKVLDPKGVLFAGRVISRGD---DGDPFDGDERVPKSKDLEGVL---GME-SAVVIIDDS 1059 (1208)
Q Consensus 999 ----t--------reYAd~VLdiLDP~gkLFs~RIiSRDD---c~~~fdG~er~~yvKDLsrVL---GrD-srVVIIDDr 1059 (1208)
+ ..+-..|..+|--.|.-|.+.+|..+. .|. +|.+..+=|...+ +.| ...++|-|+
T Consensus 57 sGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~-----cRKP~~gm~~~~~~~~~iD~~~s~~VGD~ 131 (181)
T COG0241 57 SGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCD-----CRKPKPGMLLSALKEYNIDLSRSYVVGDR 131 (181)
T ss_pred CCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCc-----ccCCChHHHHHHHHHhCCCccceEEecCc
Confidence 2 233344677777777778886665321 122 2334433332222 345 677888887
Q ss_pred C
Q 000959 1060 V 1060 (1208)
Q Consensus 1060 p 1060 (1208)
.
T Consensus 132 ~ 132 (181)
T COG0241 132 L 132 (181)
T ss_pred H
Confidence 5
No 140
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=57.70 E-value=15 Score=39.03 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=55.3
Q ss_pred CCCCCCCccccccchhccCCchHHHHHHhHHHHhhHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccc
Q 000959 874 PVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEE 953 (1208)
Q Consensus 874 ~~~~~pq~~~~~f~~L~~Gy~~~q~a~I~ke~arrLe~q~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee 953 (1208)
+....|+.+..+|.++--... .|...+=..||+|+|+||+.-..
T Consensus 14 p~l~~P~l~V~si~~I~~~~~-------------------~Lk~~Gik~li~DkDNTL~~~~~----------------- 57 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRDIDFEAN-------------------HLKKKGIKALIFDKDNTLTPPYE----------------- 57 (168)
T ss_pred ccccCCCEEcCChhhCCcchh-------------------hhhhcCceEEEEcCCCCCCCCCc-----------------
Confidence 445677777766665532210 13345677899999999984321
Q ss_pred cccCCCcceeeeeccceEEEEeccCHHHHHHHhhccc---EEEEEcCC-------cHHHHHHHHHHhc
Q 000959 954 QDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLF---EMHLYTMG-------NKLYATEMAKVLD 1011 (1208)
Q Consensus 954 ~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklY---EIVIYTAG-------treYAd~VLdiLD 1011 (1208)
-.+-|.+.+.|+++.+.| .|+|++++ ...-|..+.+.|.
T Consensus 58 -------------------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 58 -------------------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALG 106 (168)
T ss_pred -------------------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhC
Confidence 113566777888888765 39999998 4667778888775
No 141
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=57.18 E-value=13 Score=48.93 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=58.0
Q ss_pred eccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-Cc
Q 000959 975 LRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SA 1052 (1208)
Q Consensus 975 LRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-sr 1052 (1208)
+.||+.+||+.|.+ -|.+.|.|++.+.+++.+++.+.-...+|.. +++.+++. ..++. +..+.+-++ .+|.. ..
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~-iv~~~~~~-~~KP~-Pe~~~~a~~-~lgv~p~e 237 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDA-IVSADAFE-NLKPA-PDIFLAAAK-ILGVPTSE 237 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCE-EEECcccc-cCCCC-HHHHHHHHH-HcCcCccc
Confidence 58999999999964 6999999999999999999987644446764 66555432 11211 112223333 35655 78
Q ss_pred EEEEcCCCccc
Q 000959 1053 VVIIDDSVRVW 1063 (1208)
Q Consensus 1053 VVIIDDrpdVW 1063 (1208)
+|+|+|++.-.
T Consensus 238 ~v~IgDs~~Di 248 (1057)
T PLN02919 238 CVVIEDALAGV 248 (1057)
T ss_pred EEEEcCCHHHH
Confidence 99999986433
No 142
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=57.02 E-value=18 Score=39.59 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
.+++|||+||++..
T Consensus 3 ~~~~D~DGtl~~~~ 16 (249)
T TIGR01457 3 GYLIDLDGTMYKGK 16 (249)
T ss_pred EEEEeCCCceEcCC
Confidence 68999999999875
No 143
>PLN02811 hydrolase
Probab=56.71 E-value=10 Score=40.13 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=51.9
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHH-HHHHhcCCCceeeeeEEecC--CCCCCCCCCCCCCccccCCCccC
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATE-MAKVLDPKGVLFAGRVISRG--DDGDPFDGDERVPKSKDLEGVLG 1048 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~-VLdiLDP~gkLFs~RIiSRD--Dc~~~fdG~er~~yvKDLsrVLG 1048 (1208)
+.+.||+.+||+.|.+ .|.+.|-|++.+.+... +.+...-. .+|.. +++.+ ++.. .+. .+..|.+-+.+ ++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~-i~~~~~~~~~~-~KP-~p~~~~~a~~~-~~ 151 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHH-VVTGDDPEVKQ-GKP-APDIFLAAARR-FE 151 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCE-EEECChhhccC-CCC-CcHHHHHHHHH-hC
Confidence 5678999999999975 69999999999876553 33222111 36654 66655 3321 121 11122333332 33
Q ss_pred ---CC-CcEEEEcCCCccc
Q 000959 1049 ---ME-SAVVIIDDSVRVW 1063 (1208)
Q Consensus 1049 ---rD-srVVIIDDrpdVW 1063 (1208)
.. +.+|+|+|+..-.
T Consensus 152 ~~~~~~~~~v~IgDs~~di 170 (220)
T PLN02811 152 DGPVDPGKVLVFEDAPSGV 170 (220)
T ss_pred CCCCCccceEEEeccHhhH
Confidence 54 7899999997433
No 144
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=56.18 E-value=18 Score=38.97 Aligned_cols=15 Identities=53% Similarity=0.786 Sum_probs=12.8
Q ss_pred CeEEEEeCCCceeec
Q 000959 920 KLCLVLDLDHTLLNS 934 (1208)
Q Consensus 920 KLTLVLDLDETLIHS 934 (1208)
++.++.|||+||+..
T Consensus 1 ~~li~tDlDGTLl~~ 15 (249)
T TIGR01485 1 RLLLVSDLDNTLVDH 15 (249)
T ss_pred CeEEEEcCCCcCcCC
Confidence 467899999999964
No 145
>PLN02151 trehalose-phosphatase
Probab=55.78 E-value=21 Score=42.10 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=45.7
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEE
Q 000959 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 993 (1208)
Q Consensus 914 rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIV 993 (1208)
.+...+++.|+||+|+||+--.. +|. -+..-|.+.+-|++|++.+.++
T Consensus 92 ~~~~~~~~ll~lDyDGTL~PIv~----~P~----------------------------~A~~~~~~~~aL~~La~~~~va 139 (354)
T PLN02151 92 HKSEGKQIVMFLDYDGTLSPIVD----DPD----------------------------RAFMSKKMRNTVRKLAKCFPTA 139 (354)
T ss_pred HhhcCCceEEEEecCccCCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhcCCCEE
Confidence 44567899999999999993221 121 1345689999999999999999
Q ss_pred EEcCCcHHHHHHHH
Q 000959 994 LYTMGNKLYATEMA 1007 (1208)
Q Consensus 994 IYTAGtreYAd~VL 1007 (1208)
|-|--...-.+.++
T Consensus 140 IvSGR~~~~l~~~~ 153 (354)
T PLN02151 140 IVSGRCREKVSSFV 153 (354)
T ss_pred EEECCCHHHHHHHc
Confidence 99977666655554
No 146
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=55.73 E-value=16 Score=41.47 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.7
Q ss_pred CCCeEEEEeCCCceeecc
Q 000959 918 ARKLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 918 ~rKLTLVLDLDETLIHSt 935 (1208)
.+.-+.++|||+||++..
T Consensus 6 ~~y~~~l~DlDGvl~~G~ 23 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGN 23 (269)
T ss_pred hhcCEEEEcCcCceEeCC
Confidence 345678999999999875
No 147
>PLN02423 phosphomannomutase
Probab=55.67 E-value=12 Score=40.90 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.5
Q ss_pred CCeEEEEeCCCceeecc
Q 000959 919 RKLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt 935 (1208)
-|+.+++||||||+++.
T Consensus 6 ~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 6 PGVIALFDVDGTLTAPR 22 (245)
T ss_pred cceEEEEeccCCCcCCC
Confidence 45667799999999764
No 148
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=54.76 E-value=8.2 Score=41.80 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEEEEcCC
Q 000959 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 998 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIVIYTAG 998 (1208)
+|..|+||+|+||+-... +|. ..+.-|++.+.|++|++....+||=.+
T Consensus 2 ~~~~l~lD~DGTL~~~~~----~p~----------------------------~~~~~~~~~~~L~~L~~~~~~~v~ivS 49 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVP----DPD----------------------------AAVVSDRLLTILQKLAARPHNAIWIIS 49 (244)
T ss_pred CcEEEEEecCccccCCcC----CCc----------------------------ccCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 678899999999995321 221 123468899999999987665544333
Q ss_pred cHHHHHHHHHHhcCC
Q 000959 999 NKLYATEMAKVLDPK 1013 (1208)
Q Consensus 999 treYAd~VLdiLDP~ 1013 (1208)
.|.+.+ +...+.+.
T Consensus 50 GR~~~~-~~~~~~~~ 63 (244)
T TIGR00685 50 GRKFLE-KWLGVKLP 63 (244)
T ss_pred CCChhh-ccccCCCC
Confidence 445533 33444443
No 149
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=54.37 E-value=11 Score=48.57 Aligned_cols=72 Identities=7% Similarity=0.038 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHhhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCC-CCcHHHHHHHHhcC
Q 000959 1131 DVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVLLVVFSLL 1207 (1208)
Q Consensus 1131 DVR~ILreiRrkVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~-~GTeKVr~A~~~gi 1207 (1208)
+-++....++...+.||.|+.+|+- ..+.+.+.++.-.+|++....+...|+|++... .+|+|+.||+..-+
T Consensus 91 ~~~~l~~~~~~p~~~~~~Vc~tgl~-----~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~ 163 (811)
T KOG1929|consen 91 LLDPLRDTMKCPGFFGLKVCLTGLS-----GDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNI 163 (811)
T ss_pred cCccchhhhcCCcccceEEEecccc-----hHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCC
Confidence 3344555677889999999999972 245788999999999999999999998888876 67799999998743
No 150
>PTZ00174 phosphomannomutase; Provisional
Probab=53.36 E-value=24 Score=38.43 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=14.7
Q ss_pred CCeEEEEeCCCceeeccc
Q 000959 919 RKLCLVLDLDHTLLNSAK 936 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~ 936 (1208)
..+.+++||||||+++..
T Consensus 4 ~~klia~DlDGTLL~~~~ 21 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN 21 (247)
T ss_pred CCeEEEEECcCCCcCCCC
Confidence 356799999999998853
No 151
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.93 E-value=7.5 Score=47.48 Aligned_cols=71 Identities=23% Similarity=0.182 Sum_probs=43.2
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeec----cceEEEEeccCHHHHHHHhhc-
Q 000959 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFP----HMGMWTKLRPGIWTFLERASK- 988 (1208)
Q Consensus 914 rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp----~~~~yVKLRPGLdEFLeeLSk- 988 (1208)
.+....|++||||||+||.--..-. +- ..-+++. +..++ -+++|.+.+.+
T Consensus 216 A~~g~~kK~LVLDLDNTLWGGVIGe--dG------------------v~GI~Ls~~~~G~~fk-----~fQ~~Ik~l~kq 270 (574)
T COG3882 216 AMSGKSKKALVLDLDNTLWGGVIGE--DG------------------VDGIRLSNSAEGEAFK-----TFQNFIKGLKKQ 270 (574)
T ss_pred HhhCcccceEEEecCCccccccccc--cc------------------ccceeecCCCCchhHH-----HHHHHHHHHHhc
Confidence 3457899999999999998765310 00 0011111 00000 14556666654
Q ss_pred ccEEEEEcCCcHHHHHHHHHH
Q 000959 989 LFEMHLYTMGNKLYATEMAKV 1009 (1208)
Q Consensus 989 lYEIVIYTAGtreYAd~VLdi 1009 (1208)
-+=+.|++..+..-|+.|...
T Consensus 271 GVlLav~SKN~~~da~evF~k 291 (574)
T COG3882 271 GVLLAVCSKNTEKDAKEVFRK 291 (574)
T ss_pred cEEEEEecCCchhhHHHHHhh
Confidence 577889999888888888763
No 152
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=50.42 E-value=57 Score=37.58 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=34.9
Q ss_pred ccCHHHHHHHhh-cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 000959 976 RPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1208)
Q Consensus 976 RPGLdEFLeeLS-klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRD 1025 (1208)
=|+..+|++++. .-+.|++.|.-....-..=++-|--.|-..-.+++=|+
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKD 197 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecC
Confidence 478999999985 67999999998877666666666556621224565564
No 153
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=50.29 E-value=18 Score=39.13 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=11.1
Q ss_pred EEEeCCCceeecc
Q 000959 923 LVLDLDHTLLNSA 935 (1208)
Q Consensus 923 LVLDLDETLIHSt 935 (1208)
+++|+|+||+.+.
T Consensus 1 ~lfD~DGvL~~~~ 13 (236)
T TIGR01460 1 FLFDIDGVLWLGH 13 (236)
T ss_pred CEEeCcCccCcCC
Confidence 4799999999874
No 154
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=49.96 E-value=17 Score=41.85 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=36.6
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCC
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPK 1013 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~ 1013 (1208)
+.++||+.+||+.+.+ -|.+.|.|.|...|++.+++.|+-.
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld 221 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD 221 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC
Confidence 6789999999999986 4999999999999999999987654
No 155
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=48.75 E-value=9.6 Score=39.43 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
.+++|||||||.|.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 47999999999986
No 156
>PLN02580 trehalose-phosphatase
Probab=48.07 E-value=30 Score=41.29 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=47.0
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccEEE
Q 000959 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 993 (1208)
Q Consensus 914 rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYEIV 993 (1208)
.....+++.|+||.||||.--.. +|. -+..-|.+++-|++|++.+-++
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~----~Pd----------------------------~A~~s~~~~~aL~~La~~~~VA 160 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVD----DPD----------------------------RALMSDAMRSAVKNVAKYFPTA 160 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhhCCCEE
Confidence 45567899999999999983221 221 1345689999999999999999
Q ss_pred EEcCCcHHHHHHHHH
Q 000959 994 LYTMGNKLYATEMAK 1008 (1208)
Q Consensus 994 IYTAGtreYAd~VLd 1008 (1208)
|-|--...-.+.++.
T Consensus 161 IVSGR~~~~L~~~l~ 175 (384)
T PLN02580 161 IISGRSRDKVYELVG 175 (384)
T ss_pred EEeCCCHHHHHHHhC
Confidence 999777776665554
No 157
>PLN02887 hydrolase family protein
Probab=47.93 E-value=29 Score=43.29 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=37.7
Q ss_pred HHHhhhcCceEEeee-----eccCCCCCCCCchHHHHHHhcCCEEec-----ccC------CCccEEEeCCCCcHHHHHH
Q 000959 1139 EQRKILAGCRIVFSR-----VFPVGEANPHLHPLWQTAEQFGAVCTK-----HID------DQVTHVVANSLGTDKVLLV 1202 (1208)
Q Consensus 1139 iRrkVL~GC~IVFSG-----VfPlg~anPe~h~LWrLAEsFGAtct~-----sId------~~VTHVVAa~~GTeKVr~A 1202 (1208)
++...-..+.+++|+ |+|.+.. +...+-.+++.+|-.... |=. ..+-|=||-.++.+.++.+
T Consensus 481 l~~~~~~~~~v~~S~~~~lEI~p~gvS--KG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgNA~eeVK~~ 558 (580)
T PLN02887 481 WSEATGDRANVVQAQPDMLEIVPPGTS--KGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNGAEKTKAV 558 (580)
T ss_pred HHHHhcCcEEEEEecCcEEEEecCCCC--HHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCCCCHHHHHh
Confidence 333333457777765 4555432 235678889999853221 111 2366788888888888765
Q ss_pred H
Q 000959 1203 V 1203 (1208)
Q Consensus 1203 ~ 1203 (1208)
.
T Consensus 559 A 559 (580)
T PLN02887 559 A 559 (580)
T ss_pred C
Confidence 3
No 158
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=46.95 E-value=14 Score=40.98 Aligned_cols=23 Identities=17% Similarity=0.370 Sum_probs=17.2
Q ss_pred HHhhhcCCCeEEEEeCCCceeecc
Q 000959 912 QKKMFSARKLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 912 q~rLLs~rKLTLVLDLDETLIHSt 935 (1208)
|+|| ......+|+||||||+.|.
T Consensus 17 ~~~~-~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 17 QHRL-GCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred HHHh-cCCceEEEEeCCCceeCCc
Confidence 4443 4455569999999999984
No 159
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=46.60 E-value=11 Score=38.11 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.9
Q ss_pred CeEEEEeCCCceeecc
Q 000959 920 KLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt 935 (1208)
...+++|||+||+.|.
T Consensus 5 ~~~viFD~DGTLiDs~ 20 (188)
T PRK10725 5 YAGLIFDMDGTILDTE 20 (188)
T ss_pred ceEEEEcCCCcCccCH
Confidence 4568999999999986
No 160
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=46.44 E-value=29 Score=40.70 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=43.9
Q ss_pred eEEEEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHh-c-----C-CCceeeeeEEe
Q 000959 970 GMWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL-D-----P-KGVLFAGRVIS 1023 (1208)
Q Consensus 970 ~~yVKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiL-D-----P-~gkLFs~RIiS 1023 (1208)
.-||++-||+.++|+++.+ -+.+.|-|++...|++.+++.| + + ...+|. .|++
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD-~IIt 240 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFD-VVIV 240 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCc-EEEe
Confidence 4689999999999999975 5899999999999999999997 6 2 356775 3554
No 161
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=46.03 E-value=15 Score=47.27 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=45.8
Q ss_pred hhhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHHHHHHHHhcC
Q 000959 1142 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLLVVFSLL 1207 (1208)
Q Consensus 1142 kVL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeKVr~A~~~gi 1207 (1208)
..++|+.|.-.++=|. ....|.+.+..+||.+..++++.|||+|+..-.+.|...|...++
T Consensus 8 ~~~~~v~~~~t~i~p~-----~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~s~~~~~a~~~~~ 68 (811)
T KOG1929|consen 8 KPMSGVTFSPTGINPI-----KREELSKKFIKLGGIDFKDFTPSVTHLIVGSVTSSKYAAAHRFDI 68 (811)
T ss_pred cccCCceeccCcCCHH-----HHHHHHHHHHhcCceeeeccCCcCceeecccccccchhhhhcCCC
Confidence 3456665555454332 134678889999999999999999999999999998876665553
No 162
>PTZ00445 p36-lilke protein; Provisional
Probab=45.28 E-value=31 Score=38.47 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=45.6
Q ss_pred hhcCCCeEEEEeCCCceee--cccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccE
Q 000959 915 MFSARKLCLVLDLDHTLLN--SAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFE 991 (1208)
Q Consensus 915 LLs~rKLTLVLDLDETLIH--St~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYE 991 (1208)
|...+=..+++|||.|||- |-.. .+|.. + ...+....||.+..++++|.+ -+-
T Consensus 38 L~~~GIk~Va~D~DnTlI~~HsgG~--~~~~~----------~------------~~~~~~~~tpefk~~~~~l~~~~I~ 93 (219)
T PTZ00445 38 LNECGIKVIASDFDLTMITKHSGGY--IDPDN----------D------------DIRVLTSVTPDFKILGKRLKNSNIK 93 (219)
T ss_pred HHHcCCeEEEecchhhhhhhhcccc--cCCCc----------c------------hhhhhccCCHHHHHHHHHHHHCCCe
Confidence 5567888999999999984 4311 12210 0 012346689999999999974 799
Q ss_pred EEEEcCCcHHH
Q 000959 992 MHLYTMGNKLY 1002 (1208)
Q Consensus 992 IVIYTAGtreY 1002 (1208)
|+|-|-+.+.-
T Consensus 94 v~VVTfSd~~~ 104 (219)
T PTZ00445 94 ISVVTFSDKEL 104 (219)
T ss_pred EEEEEccchhh
Confidence 99999988855
No 163
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=45.24 E-value=7.9 Score=48.76 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=44.5
Q ss_pred hhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCcHHHHH
Q 000959 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVLL 1201 (1208)
Q Consensus 1143 VL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GTeKVr~ 1201 (1208)
.++|+.++|+|+.+..+ .+.++.+.+|+.|..+..-++||+||...+-+|.+.
T Consensus 118 ~m~~vvlcfTg~rkk~e------~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~ 170 (850)
T KOG3524|consen 118 LMKDVVMCFTGERKKKE------ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSI 170 (850)
T ss_pred hhcCceeeeeccchhhH------HHHHHHHHhcceeEeeeccCceEEEeecccceEEEE
Confidence 56888999999987632 789999999999999999999999999866655443
No 164
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=44.84 E-value=40 Score=36.64 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=42.9
Q ss_pred EEEeccCHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEE
Q 000959 972 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1208)
Q Consensus 972 yVKLRPGLdEFLeeLSkl-YEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIi 1022 (1208)
+++++||..+.++.+... +.++|.|.|-..|+++|++.|.-+. .+.+++.
T Consensus 75 ~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~ 125 (212)
T COG0560 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELE 125 (212)
T ss_pred cCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEE
Confidence 389999999999999865 9999999999999999999997765 4555544
No 165
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=44.08 E-value=46 Score=38.73 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.5
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
+.+++|||+||+...
T Consensus 2 KLIftDLDGTLLd~~ 16 (302)
T PRK12702 2 RLVLSSLDGSLLDLE 16 (302)
T ss_pred cEEEEeCCCCCcCCC
Confidence 468999999999753
No 166
>PHA02597 30.2 hypothetical protein; Provisional
Probab=43.82 E-value=13 Score=38.20 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=12.9
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++||||||+++.
T Consensus 3 k~viFDlDGTLiD~~ 17 (197)
T PHA02597 3 PTILTDVDGVLLSWQ 17 (197)
T ss_pred cEEEEecCCceEchh
Confidence 469999999999954
No 167
>PRK11587 putative phosphatase; Provisional
Probab=42.67 E-value=13 Score=39.16 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++||||||+.|.
T Consensus 4 k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 4 KGFLFDLDGTLVDSL 18 (218)
T ss_pred CEEEEcCCCCcCcCH
Confidence 478999999999986
No 168
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=41.95 E-value=48 Score=42.36 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=38.5
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc-ccEEEEEc
Q 000959 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT 996 (1208)
Q Consensus 918 ~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk-lYEIVIYT 996 (1208)
..++.+++|||+||++.... +. +...+-|+++.+ -+.++|.|
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~-----------------------------------i~--~~t~eAL~~L~ekGI~~VIAT 456 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTY-----------------------------------SY--STALDALRLLKDKELPLVFCS 456 (694)
T ss_pred ceeeEEEEECcCCCcCCCCc-----------------------------------cC--HHHHHHHHHHHHcCCeEEEEe
Confidence 46778899999999976420 00 112334555543 47788888
Q ss_pred CCcHHHHHHHHHHhcC
Q 000959 997 MGNKLYATEMAKVLDP 1012 (1208)
Q Consensus 997 AGtreYAd~VLdiLDP 1012 (1208)
.-+..++..+++.|+.
T Consensus 457 GRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 457 AKTMGEQDLYRNELGI 472 (694)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 8877777777777764
No 169
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=41.71 E-value=13 Score=37.82 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
.+++|||+||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999875
No 170
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=41.70 E-value=27 Score=38.34 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=47.6
Q ss_pred cCCCeEEEEeCCCceeecccCC--------CCCCc-hhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhh
Q 000959 917 SARKLCLVLDLDHTLLNSAKFH--------EVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 987 (1208)
Q Consensus 917 s~rKLTLVLDLDETLIHSt~~~--------evdP~-~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLS 987 (1208)
..+++.+||||||||+....+. ..++. ..+|+. ... -..=|+..+|++.+.
T Consensus 69 ~~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~-----------------~~~---~~aip~a~~l~~~~~ 128 (229)
T PF03767_consen 69 ADKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVA-----------------SGK---APAIPGALELYNYAR 128 (229)
T ss_dssp HTSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHH-----------------CTG---GEEETTHHHHHHHHH
T ss_pred cCCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHh-----------------ccc---CcccHHHHHHHHHHH
Confidence 3799999999999999654210 00010 011110 001 145588999999987
Q ss_pred c-ccEEEEEcCCcHHHHHHHHHHhcCCC
Q 000959 988 K-LFEMHLYTMGNKLYATEMAKVLDPKG 1014 (1208)
Q Consensus 988 k-lYEIVIYTAGtreYAd~VLdiLDP~g 1014 (1208)
+ -++|++-|.-....-+.-++-|.-.|
T Consensus 129 ~~G~~V~~iT~R~~~~r~~T~~nL~~~G 156 (229)
T PF03767_consen 129 SRGVKVFFITGRPESQREATEKNLKKAG 156 (229)
T ss_dssp HTTEEEEEEEEEETTCHHHHHHHHHHHT
T ss_pred HCCCeEEEEecCCchhHHHHHHHHHHcC
Confidence 5 59999999877665555555554334
No 171
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=41.00 E-value=15 Score=38.20 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.7
Q ss_pred eEEEEeCCCceeeccc
Q 000959 921 LCLVLDLDHTLLNSAK 936 (1208)
Q Consensus 921 LTLVLDLDETLIHSt~ 936 (1208)
..+++|||+||+.+..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 4789999999999863
No 172
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=40.87 E-value=16 Score=38.07 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
.++++|||+||+.+.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 468999999999986
No 173
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=40.64 E-value=15 Score=38.29 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.2
Q ss_pred CeEEEEeCCCceeeccc
Q 000959 920 KLCLVLDLDHTLLNSAK 936 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt~ 936 (1208)
...+++|||+||+++..
T Consensus 3 ~~~viFD~DGTL~ds~~ 19 (214)
T PRK13288 3 INTVLFDLDGTLINTNE 19 (214)
T ss_pred ccEEEEeCCCcCccCHH
Confidence 34789999999999863
No 174
>PRK11590 hypothetical protein; Provisional
Probab=40.35 E-value=16 Score=38.69 Aligned_cols=39 Identities=10% Similarity=-0.107 Sum_probs=34.1
Q ss_pred EEeccCHHHHH-HHhh-cccEEEEEcCCcHHHHHHHHHHhc
Q 000959 973 TKLRPGIWTFL-ERAS-KLFEMHLYTMGNKLYATEMAKVLD 1011 (1208)
Q Consensus 973 VKLRPGLdEFL-eeLS-klYEIVIYTAGtreYAd~VLdiLD 1011 (1208)
+..+||+.+.| +.+. .-+.++|-|++.+.|+.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 46799999999 5676 589999999999999999998754
No 175
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=40.21 E-value=60 Score=33.01 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=38.0
Q ss_pred EEEEeccCHHHHHHHhhcc-cEEEEEcCCcHHHHHHHHHHhcC
Q 000959 971 MWTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 1012 (1208)
Q Consensus 971 ~yVKLRPGLdEFLeeLSkl-YEIVIYTAGtreYAd~VLdiLDP 1012 (1208)
....+||++.++|++|.+. +.++|.|......|..+++.|.-
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi 166 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGI 166 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTS
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccc
Confidence 3457899999999999986 99999999999999999999865
No 176
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=39.56 E-value=56 Score=36.20 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=35.0
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhc
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLD 1011 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLD 1011 (1208)
+++|||.++|.+++.+ ---++|-++|+..|..+++..|=
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 8899999999999986 47889999999999999998654
No 177
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=39.24 E-value=15 Score=40.66 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 000959 920 KLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt 935 (1208)
+..+++|||+||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3489999999999985
No 178
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=37.81 E-value=19 Score=37.07 Aligned_cols=39 Identities=8% Similarity=-0.064 Sum_probs=23.0
Q ss_pred CCCCchHHHHHHhcCCEEecccCCCccEEEeCCCCc-HHHHHHHHhcC
Q 000959 1161 NPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT-DKVLLVVFSLL 1207 (1208)
Q Consensus 1161 nPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~~GT-eKVr~A~~~gi 1207 (1208)
.|+...+.+.++.+|.. ..++|.-.... .-+..|.+.|+
T Consensus 160 KP~~~~~~~~~~~~~~~--------~~~~~~IgD~~~~Di~~A~~aG~ 199 (203)
T TIGR02252 160 KPDPKIFQEALERAGIS--------PEEALHIGDSLRNDYQGARAAGW 199 (203)
T ss_pred CCCHHHHHHHHHHcCCC--------hhHEEEECCCchHHHHHHHHcCC
Confidence 45544455667888853 23344444443 46888888886
No 179
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=37.43 E-value=69 Score=34.24 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=55.6
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCC---ccC
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEG---VLG 1048 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsr---VLG 1048 (1208)
...-||+.+.|+.+.+ -|.+.|.|+.....++.+++.++-.. +|.. ++.-++.. ..+ +....|-. -+|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~-i~g~~~~~-~~K-----P~P~~l~~~~~~~~ 159 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDV-IVGGDDVP-PPK-----PDPEPLLLLLEKLG 159 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccce-EEcCCCCC-CCC-----cCHHHHHHHHHHhC
Confidence 5678999999999985 68999999999999999999988765 7875 44422111 111 22222221 234
Q ss_pred CC-CcEEEEcCCCc
Q 000959 1049 ME-SAVVIIDDSVR 1061 (1208)
Q Consensus 1049 rD-srVVIIDDrpd 1061 (1208)
.+ ..+|+|-|+..
T Consensus 160 ~~~~~~l~VGDs~~ 173 (220)
T COG0546 160 LDPEEALMVGDSLN 173 (220)
T ss_pred CChhheEEECCCHH
Confidence 44 57889988764
No 180
>PRK11590 hypothetical protein; Provisional
Probab=36.69 E-value=46 Score=35.33 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.0
Q ss_pred CCeEEEEeCCCceeecc
Q 000959 919 RKLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt 935 (1208)
.+..+++|||+||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 55689999999999554
No 181
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=36.06 E-value=15 Score=36.08 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=12.3
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
++++|+|+||+.+.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47999999999985
No 182
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=35.93 E-value=18 Score=36.36 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++|||+||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 368999999999986
No 183
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=35.72 E-value=33 Score=34.51 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.9
Q ss_pred eccCHH----HHHHHh-hcccEEEEEcCCcHHHHHHHHHHhcCCC-ceeeeeE
Q 000959 975 LRPGIW----TFLERA-SKLFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRV 1021 (1208)
Q Consensus 975 LRPGLd----EFLeeL-SklYEIVIYTAGtreYAd~VLdiLDP~g-kLFs~RI 1021 (1208)
++|++. +||+++ ...++++|-|++...|+..+++.+.-.. .++..++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 457777 999997 5789999999999999999999776433 2445444
No 184
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=35.60 E-value=18 Score=38.63 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+|+|||+||+.|.
T Consensus 13 k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 13 RAVLFDLDGTLLDSA 27 (229)
T ss_pred CEEEEcCcCccccCH
Confidence 478999999999986
No 185
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=35.58 E-value=19 Score=34.79 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=11.8
Q ss_pred EEEeCCCceeecc
Q 000959 923 LVLDLDHTLLNSA 935 (1208)
Q Consensus 923 LVLDLDETLIHSt 935 (1208)
+++|||+||+++.
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999875
No 186
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=35.47 E-value=21 Score=37.30 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=14.2
Q ss_pred CCeEEEEeCCCceeecc
Q 000959 919 RKLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt 935 (1208)
.+..+++|+||||+++.
T Consensus 13 ~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAE 29 (219)
T ss_pred cCCEEEEeCcccCCCch
Confidence 34589999999999874
No 187
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=34.98 E-value=68 Score=39.53 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=36.0
Q ss_pred EEeccCHHHHHHHhhc-ccEEEEEcCCcHHHHHHHHHHhcC
Q 000959 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDP 1012 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-lYEIVIYTAGtreYAd~VLdiLDP 1012 (1208)
..+||++.++|++|.+ -+.++|.|...+.+|+.+++.+.-
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 4579999999999986 599999999999999999998754
No 188
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=34.90 E-value=22 Score=38.81 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++|||+|||.+.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 579999999999984
No 189
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=34.57 E-value=93 Score=35.58 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=47.8
Q ss_pred HhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhcccE-
Q 000959 913 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE- 991 (1208)
Q Consensus 913 ~rLLs~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSklYE- 991 (1208)
...+..+|..|+||.|+||.+-..+ |.. ...=+++.+.|.+|+..+.
T Consensus 11 ~~~~~a~~~~~~lDyDGTl~~i~~~----p~~----------------------------a~~~~~l~~lL~~Las~~~~ 58 (266)
T COG1877 11 EPYLNARKRLLFLDYDGTLTEIVPH----PEA----------------------------AVPDDRLLSLLQDLASDPRN 58 (266)
T ss_pred cccccccceEEEEeccccccccccC----ccc----------------------------cCCCHHHHHHHHHHHhcCCC
Confidence 3567789999999999999987642 211 1234678889999999988
Q ss_pred -EEEEcCCcHHHHHHHHH
Q 000959 992 -MHLYTMGNKLYATEMAK 1008 (1208)
Q Consensus 992 -IVIYTAGtreYAd~VLd 1008 (1208)
++|.|--...-.+..+.
T Consensus 59 ~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 59 VVAIISGRSLAELERLFG 76 (266)
T ss_pred eEEEEeCCCHHHHHHhcC
Confidence 88888777777666555
No 190
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=34.31 E-value=18 Score=36.32 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
.+|+|+|+||+.+.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 37999999999986
No 191
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=33.68 E-value=20 Score=38.92 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++|||+||+.|.
T Consensus 23 k~viFDlDGTLiDs~ 37 (248)
T PLN02770 23 EAVLFDVDGTLCDSD 37 (248)
T ss_pred CEEEEcCCCccCcCH
Confidence 469999999999986
No 192
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=33.52 E-value=25 Score=37.89 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++|||+|||.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 468999999999984
No 193
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=33.51 E-value=21 Score=35.59 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=12.2
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
.+++|||+|||.+.
T Consensus 1 ~vlFDlDgtLv~~~ 14 (183)
T TIGR01509 1 AILFDLDGVLVDTS 14 (183)
T ss_pred CeeeccCCceechH
Confidence 37999999999885
No 194
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=33.49 E-value=24 Score=35.39 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.1
Q ss_pred CeEEEEeCCCceeecc
Q 000959 920 KLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt 935 (1208)
|..+|+|+|+||+...
T Consensus 1 ~~~iiFD~dgTL~~~~ 16 (188)
T TIGR01489 1 KVVVVSDFDGTITLND 16 (188)
T ss_pred CeEEEEeCCCcccCCC
Confidence 6789999999999874
No 195
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=32.84 E-value=17 Score=37.68 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=11.8
Q ss_pred EEEeCCCceeecc
Q 000959 923 LVLDLDHTLLNSA 935 (1208)
Q Consensus 923 LVLDLDETLIHSt 935 (1208)
+|+|||+||+.|.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999986
No 196
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=31.57 E-value=62 Score=34.88 Aligned_cols=37 Identities=11% Similarity=-0.095 Sum_probs=33.1
Q ss_pred EEeccCHHHHHH-Hhh-cccEEEEEcCCcHHHHHHHHHH
Q 000959 973 TKLRPGIWTFLE-RAS-KLFEMHLYTMGNKLYATEMAKV 1009 (1208)
Q Consensus 973 VKLRPGLdEFLe-eLS-klYEIVIYTAGtreYAd~VLdi 1009 (1208)
+.++|++.+.|+ .+. +-+.|+|-|++...|++++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 367999999996 677 6999999999999999999976
No 197
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=31.16 E-value=24 Score=36.44 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++|+|+||+++.
T Consensus 2 k~viFD~DGTL~d~~ 16 (224)
T TIGR02254 2 KTLLFDLDDTILDFQ 16 (224)
T ss_pred CEEEEcCcCcccccc
Confidence 368999999999986
No 198
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=31.15 E-value=23 Score=39.70 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=14.1
Q ss_pred CeEEEEeCCCceeecc
Q 000959 920 KLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt 935 (1208)
-..+++|||+||+.|.
T Consensus 62 ~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 62 LQAIIFDFDGTLVDSL 77 (273)
T ss_pred cCEEEECCcCccccCH
Confidence 4578999999999996
No 199
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=30.95 E-value=24 Score=36.25 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
.+++|||+|||.+.
T Consensus 3 ~viFD~dgTLiD~~ 16 (198)
T TIGR01428 3 ALVFDVYGTLFDVH 16 (198)
T ss_pred EEEEeCCCcCccHH
Confidence 68999999999875
No 200
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=30.86 E-value=19 Score=37.05 Aligned_cols=13 Identities=54% Similarity=0.838 Sum_probs=11.6
Q ss_pred EEEeCCCceeecc
Q 000959 923 LVLDLDHTLLNSA 935 (1208)
Q Consensus 923 LVLDLDETLIHSt 935 (1208)
+|+|||+||+.|.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999875
No 201
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=30.81 E-value=28 Score=37.12 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.0
Q ss_pred CCeEEEEeCCCceeeccc
Q 000959 919 RKLCLVLDLDHTLLNSAK 936 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt~ 936 (1208)
...++++|||+||+.|..
T Consensus 3 ~~~~iiFDlDGTL~Ds~~ 20 (220)
T COG0546 3 MIKAILFDLDGTLVDSAE 20 (220)
T ss_pred CCCEEEEeCCCccccChH
Confidence 346899999999999863
No 202
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=30.35 E-value=83 Score=35.77 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=37.0
Q ss_pred EEeccCHHHHHHHhhc--ccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEE
Q 000959 973 TKLRPGIWTFLERASK--LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk--lYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIi 1022 (1208)
+-+-||+-+.++.+++ .||++|-+.++.-+.+.+++..+-. .+|. +||
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~-d~F~-~If 132 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH-DLFS-EIF 132 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH-HHHH-HHh
Confidence 4567998888888765 4899999999999999999987543 2444 344
No 203
>PLN02382 probable sucrose-phosphatase
Probab=30.29 E-value=27 Score=41.47 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.9
Q ss_pred hhhcCCCeEEEEeCCCceeec
Q 000959 914 KMFSARKLCLVLDLDHTLLNS 934 (1208)
Q Consensus 914 rLLs~rKLTLVLDLDETLIHS 934 (1208)
+|-...++.|+.||||||+..
T Consensus 3 ~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 3 RLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred cccCCCCEEEEEcCCCcCcCC
Confidence 456678999999999999965
No 204
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=30.29 E-value=26 Score=36.39 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++|+|+||+++.
T Consensus 7 ~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 7 RAVAFDLDGTLVDSA 21 (226)
T ss_pred cEEEEcCCcccccCH
Confidence 478999999999875
No 205
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=30.13 E-value=31 Score=35.83 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 000959 922 CLVLDLDHTLLNSA 935 (1208)
Q Consensus 922 TLVLDLDETLIHSt 935 (1208)
++++|||+||+++.
T Consensus 4 ~viFDldGtL~d~~ 17 (211)
T TIGR02247 4 AVIFDFGGVLLPSP 17 (211)
T ss_pred EEEEecCCceecCH
Confidence 79999999999874
No 206
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=30.05 E-value=25 Score=37.89 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=48.9
Q ss_pred EEeccCHHHHHHHhhcccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCCccccCCCccCCC-C
Q 000959 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSklYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiSRDDc~~~fdG~er~~yvKDLsrVLGrD-s 1051 (1208)
+..-||+.++|+.|.+.|-+.|.|++... ++.+.= ..+|.. |++-++.. ..++. +..+.+-+. .+|.+ +
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl-~~~fd~-i~~~~~~~-~~KP~-p~~~~~a~~-~~~~~~~ 181 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGL-GDYFEF-VLRAGPHG-RSKPF-SDMYHLAAE-KLNVPIG 181 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCc-HHhhce-eEecccCC-cCCCc-HHHHHHHHH-HcCCChh
Confidence 45569999999999988999999998865 233222 236654 55433221 11211 111222233 34655 7
Q ss_pred cEEEEcCCC--ccccc
Q 000959 1052 AVVIIDDSV--RVWPH 1065 (1208)
Q Consensus 1052 rVVIIDDrp--dVW~~ 1065 (1208)
.+|+|.|++ ++-.-
T Consensus 182 ~~~~VGD~~~~Di~~A 197 (238)
T PRK10748 182 EILHVGDDLTTDVAGA 197 (238)
T ss_pred HEEEEcCCcHHHHHHH
Confidence 899997773 56543
No 207
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=29.36 E-value=27 Score=45.16 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=38.0
Q ss_pred cccchhHHhhhhHHHHHHHHHHhhcCCCCcchhHHHHHHHhhhhheeeeeeccChhhhhhhHHHHHHHHHhhhccCCCCC
Q 000959 188 RGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLF 267 (1208)
Q Consensus 188 ~~~~sf~~~c~~~~~~~~~l~~~~~~~~~~~~d~lv~~~f~~~~~~~~v~~s~~~~~~e~nk~~~~rl~~~~~~~~~~~~ 267 (1208)
..+.-|.=.|-.-+. .|.+++.+......-.+| .-|.+. +.-...+.||..|.+|+.+|-.|+-.+.
T Consensus 415 ~~elPftf~~P~s~e---el~~lL~~~~~~~~~~iI----~RIrk~------~hpsLa~~NK~Kl~~f~~vLlq~i~~la 481 (840)
T PF04147_consen 415 KSELPFTFPCPSSHE---ELLELLDGYSPEDQPTII----QRIRKC------YHPSLAEGNKEKLQVFFGVLLQHILYLA 481 (840)
T ss_pred ccCCCceecCCCCHH---HHHHHHhcCCHHHHhHHH----HHHHHh------CCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 555667777887554 455688766543333333 334443 4445566777777666655554444433
Q ss_pred C
Q 000959 268 S 268 (1208)
Q Consensus 268 ~ 268 (1208)
+
T Consensus 482 ~ 482 (840)
T PF04147_consen 482 S 482 (840)
T ss_pred c
Confidence 3
No 208
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=29.28 E-value=64 Score=38.64 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=49.0
Q ss_pred hhcCceEEeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEeCC--CCcHHHHHHHHhcCC
Q 000959 1143 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS--LGTDKVLLVVFSLLS 1208 (1208)
Q Consensus 1143 VL~GC~IVFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVAa~--~GTeKVr~A~~~gi~ 1208 (1208)
..+|-.|||++=+-. +...|...+-.-|-.+++.++..+.-|||.. ..+-|...|.++||.
T Consensus 294 lv~Gm~v~~~~e~~~-----~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gip 356 (377)
T PRK05601 294 LVAGMEVVVAPEITM-----DPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIP 356 (377)
T ss_pred cccCcEEEEeCCccC-----CHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCC
Confidence 568999999873322 1245777788899999999999999999987 458899999999983
No 209
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=29.10 E-value=34 Score=34.76 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.8
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
.++|+|||+||+.+.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 469999999999864
No 210
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=28.83 E-value=30 Score=36.39 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 000959 919 RKLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt 935 (1208)
.-..+++|+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 35678999999999885
No 211
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=28.69 E-value=26 Score=35.13 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=11.7
Q ss_pred EEEeCCCceeecc
Q 000959 923 LVLDLDHTLLNSA 935 (1208)
Q Consensus 923 LVLDLDETLIHSt 935 (1208)
+++|||+|||.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999875
No 212
>PRK09449 dUMP phosphatase; Provisional
Probab=27.57 E-value=28 Score=36.39 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=12.2
Q ss_pred eEEEEeCCCceeec
Q 000959 921 LCLVLDLDHTLLNS 934 (1208)
Q Consensus 921 LTLVLDLDETLIHS 934 (1208)
..+++|||+||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 47999999999973
No 213
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=27.33 E-value=1.1e+02 Score=39.95 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=45.5
Q ss_pred HhhhcCceE-EeeeeccCCCCCCCCchHHHHHHhcCCEEecccCCCccEEEe--CCCCcHHHHHHHHh
Q 000959 1141 RKILAGCRI-VFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVA--NSLGTDKVLLVVFS 1205 (1208)
Q Consensus 1141 rkVL~GC~I-VFSGVfPlg~anPe~h~LWrLAEsFGAtct~sId~~VTHVVA--a~~GTeKVr~A~~~ 1205 (1208)
..+|.|..+ ||||.-- ....+.+-+++..+||.++..+.+.+||.|+ .+..|-+.++|.+.
T Consensus 631 s~if~gl~f~Vlsgt~~----~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~ 694 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTSE----THTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKR 694 (881)
T ss_pred hhhhcCeeEEEecCCcc----cccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhc
Confidence 458899988 6776421 1223678899999999999999999999996 45556666666654
No 214
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=26.94 E-value=34 Score=36.80 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=13.4
Q ss_pred CeEEEEeCCCceeecc
Q 000959 920 KLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt 935 (1208)
-..+++|||+||+.+.
T Consensus 10 ~k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 10 VDTVLLDMDGTLLDLA 25 (224)
T ss_pred CCEEEEcCCCCccchh
Confidence 3579999999999964
No 215
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=26.23 E-value=40 Score=37.84 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=14.5
Q ss_pred CCeEEEEeCCCceeecc
Q 000959 919 RKLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt 935 (1208)
+-..+|+||||||+.|.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 34579999999999986
No 216
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=26.09 E-value=91 Score=39.53 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=42.2
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhccccccCCCcceeeeeccceEEEEeccCHHHHHHHhhc--ccEEEE
Q 000959 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHL 994 (1208)
Q Consensus 917 s~rKLTLVLDLDETLIHSt~~~evdP~~~Eil~~~ee~D~~~P~~~lFrlp~~~~yVKLRPGLdEFLeeLSk--lYEIVI 994 (1208)
..++..|++|+|+||+-... +|. .....|.+.+.|++|.+ ...++|
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~----~~~----------------------------~~~~~~~~~~~L~~L~~d~g~~V~i 536 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAP----DPE----------------------------LAVPDKELRDLLRRLAADPNTDVAI 536 (726)
T ss_pred hccceEEEEecCccccCCCC----Ccc----------------------------cCCCCHHHHHHHHHHHcCCCCeEEE
Confidence 45678899999999995321 110 01235678889999987 688888
Q ss_pred EcCCcHHHHHHHHHH
Q 000959 995 YTMGNKLYATEMAKV 1009 (1208)
Q Consensus 995 YTAGtreYAd~VLdi 1009 (1208)
.|--.......++..
T Consensus 537 vSGR~~~~l~~~~~~ 551 (726)
T PRK14501 537 ISGRDRDTLERWFGD 551 (726)
T ss_pred EeCCCHHHHHHHhCC
Confidence 888777766655543
No 217
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=25.06 E-value=53 Score=35.44 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 000959 921 LCLVLDLDHTLLNSA 935 (1208)
Q Consensus 921 LTLVLDLDETLIHSt 935 (1208)
..+++|||+||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 479999999999874
No 218
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=23.07 E-value=42 Score=35.14 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 000959 920 KLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 920 KLTLVLDLDETLIHSt 935 (1208)
...+++|||+||+.+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 3578999999999875
No 219
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=22.00 E-value=1.1e+02 Score=37.48 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=37.1
Q ss_pred EEeccCHHHHHHHhhc-c-cEEEEEcCCcHHHHHHHHHHhcCC
Q 000959 973 TKLRPGIWTFLERASK-L-FEMHLYTMGNKLYATEMAKVLDPK 1013 (1208)
Q Consensus 973 VKLRPGLdEFLeeLSk-l-YEIVIYTAGtreYAd~VLdiLDP~ 1013 (1208)
..+|||+.+.|++|.+ . |.++|.|...+.+|..+++.+.-+
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~ 425 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID 425 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC
Confidence 5689999999999976 4 899999999999999999998764
No 220
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=21.67 E-value=49 Score=34.10 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=10.7
Q ss_pred EEEEeCCCceee
Q 000959 922 CLVLDLDHTLLN 933 (1208)
Q Consensus 922 TLVLDLDETLIH 933 (1208)
.+|+|||+||+.
T Consensus 3 ~v~FD~DGTL~~ 14 (205)
T PRK13582 3 IVCLDLEGVLVP 14 (205)
T ss_pred EEEEeCCCCChh
Confidence 589999999993
No 221
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=21.32 E-value=42 Score=39.90 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=13.9
Q ss_pred eEEEEeCCCceeeccc
Q 000959 921 LCLVLDLDHTLLNSAK 936 (1208)
Q Consensus 921 LTLVLDLDETLIHSt~ 936 (1208)
..+++|||+||++|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 4789999999999863
No 222
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=20.97 E-value=1.4e+02 Score=33.42 Aligned_cols=49 Identities=12% Similarity=0.327 Sum_probs=39.2
Q ss_pred EEeccCHHHHHHHhh---cccEEEEEcCCcHHHHHHHHHHhcCCCceeeeeEEe
Q 000959 973 TKLRPGIWTFLERAS---KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1023 (1208)
Q Consensus 973 VKLRPGLdEFLeeLS---klYEIVIYTAGtreYAd~VLdiLDP~gkLFs~RIiS 1023 (1208)
+.+.||..+||+.+. ..||++|-+.|...|-+.|++.-.-.. +|.. ||+
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~~-I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFSE-IFT 121 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccce-EEe
Confidence 778999999999994 389999999999999999988655432 4543 554
No 223
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=20.27 E-value=46 Score=35.55 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.2
Q ss_pred EEEeCCCceeecc
Q 000959 923 LVLDLDHTLLNSA 935 (1208)
Q Consensus 923 LVLDLDETLIHSt 935 (1208)
+++|||+||++..
T Consensus 2 i~~DlDgTLl~~~ 14 (236)
T TIGR02471 2 IITDLDNTLLGDD 14 (236)
T ss_pred eEEeccccccCCH
Confidence 7899999999853
No 224
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=20.17 E-value=56 Score=35.99 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=18.1
Q ss_pred CHHHHHH-HhhcccEEEEEcCCcHHHHHHHHHH
Q 000959 978 GIWTFLE-RASKLFEMHLYTMGNKLYATEMAKV 1009 (1208)
Q Consensus 978 GLdEFLe-eLSklYEIVIYTAGtreYAd~VLdi 1009 (1208)
-+.+||+ ......-+++-|--+..=+..+++.
T Consensus 23 ~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~ 55 (247)
T PF05116_consen 23 RLEELLEQQARPEILFVYVTGRSLESVLRLLRE 55 (247)
T ss_dssp HHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceEEEECCCCHHHHHHHHHh
Confidence 3455666 4455666666676666666666654
No 225
>PLN02954 phosphoserine phosphatase
Probab=20.16 E-value=56 Score=34.27 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=13.9
Q ss_pred CCeEEEEeCCCceeecc
Q 000959 919 RKLCLVLDLDHTLLNSA 935 (1208)
Q Consensus 919 rKLTLVLDLDETLIHSt 935 (1208)
....+|+|+|+||+.+.
T Consensus 11 ~~k~viFDfDGTL~~~~ 27 (224)
T PLN02954 11 SADAVCFDVDSTVCVDE 27 (224)
T ss_pred cCCEEEEeCCCcccchH
Confidence 35677899999999875
Done!