Query 000960
Match_columns 1208
No_of_seqs 477 out of 1579
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 11:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0998 Synaptic vesicle prote 100.0 1.2E-47 2.7E-52 469.4 41.4 587 1-797 1-600 (847)
2 KOG1029 Endocytic adaptor prot 100.0 2.8E-39 6.2E-44 375.6 43.1 101 426-529 183-283 (1118)
3 PF12763 EF-hand_4: Cytoskelet 99.8 1.4E-20 3E-25 180.7 7.4 97 1-99 1-99 (104)
4 KOG1029 Endocytic adaptor prot 99.8 1.7E-17 3.6E-22 195.5 32.6 91 427-519 5-95 (1118)
5 PF12763 EF-hand_4: Cytoskelet 99.8 8.8E-20 1.9E-24 175.2 6.8 92 431-523 2-95 (104)
6 KOG1955 Ral-GTPase effector RA 99.6 2.5E-15 5.4E-20 171.5 16.9 99 423-522 216-314 (737)
7 smart00027 EH Eps15 homology d 99.6 1.3E-15 2.7E-20 142.6 11.2 93 429-522 1-93 (96)
8 KOG0998 Synaptic vesicle prote 99.5 2.1E-12 4.5E-17 160.7 26.4 99 425-525 116-216 (847)
9 KOG1955 Ral-GTPase effector RA 99.4 1E-13 2.2E-18 158.7 5.2 87 5-92 226-312 (737)
10 smart00027 EH Eps15 homology d 99.3 9.7E-12 2.1E-16 116.5 9.7 90 5-95 5-94 (96)
11 KOG1954 Endocytosis/signaling 99.2 7.9E-12 1.7E-16 140.9 5.8 90 7-98 441-530 (532)
12 KOG1954 Endocytosis/signaling 99.0 2.9E-10 6.3E-15 128.5 7.2 97 424-523 431-527 (532)
13 cd00052 EH Eps15 homology doma 99.0 1.4E-09 2.9E-14 93.5 8.1 67 441-507 1-67 (67)
14 cd00052 EH Eps15 homology doma 99.0 2.2E-09 4.8E-14 92.2 8.0 67 12-78 1-67 (67)
15 PF13499 EF-hand_7: EF-hand do 98.8 1.1E-08 2.3E-13 88.8 6.5 60 440-499 1-66 (66)
16 cd05022 S-100A13 S-100A13: S-1 98.8 2.4E-08 5.2E-13 94.2 8.5 73 436-508 5-82 (89)
17 PF00038 Filament: Intermediat 98.8 1.9E-07 4.1E-12 104.0 16.6 124 614-738 174-308 (312)
18 KOG0027 Calmodulin and related 98.7 3.9E-08 8.4E-13 99.2 7.6 65 436-500 82-148 (151)
19 COG5126 FRQ1 Ca2+-binding prot 98.7 4.9E-08 1.1E-12 101.0 7.7 63 437-499 90-154 (160)
20 KOG0027 Calmodulin and related 98.6 1.3E-07 2.8E-12 95.5 9.2 71 433-503 2-74 (151)
21 cd05027 S-100B S-100B: S-100B 98.6 2.7E-07 5.9E-12 86.6 9.5 69 437-505 6-83 (88)
22 cd05025 S-100A1 S-100A1: S-100 98.6 2.1E-07 4.5E-12 86.9 8.5 71 438-508 8-87 (92)
23 PF13499 EF-hand_7: EF-hand do 98.6 1.3E-07 2.9E-12 82.0 6.4 60 11-70 1-66 (66)
24 cd05026 S-100Z S-100Z: S-100Z 98.5 3.8E-07 8.1E-12 86.1 9.5 69 437-505 8-85 (93)
25 cd05029 S-100A6 S-100A6: S-100 98.5 3.7E-07 8E-12 85.7 9.3 69 437-505 8-83 (88)
26 cd00213 S-100 S-100: S-100 dom 98.5 4.1E-07 8.8E-12 83.8 9.0 69 435-503 4-81 (88)
27 cd05031 S-100A10_like S-100A10 98.5 5.1E-07 1.1E-11 84.7 9.4 69 437-505 6-83 (94)
28 PTZ00183 centrin; Provisional 98.4 1.3E-06 2.8E-11 86.2 9.7 71 431-501 9-81 (158)
29 cd05023 S-100A11 S-100A11: S-1 98.4 1.6E-06 3.4E-11 81.8 9.2 70 436-505 6-84 (89)
30 PTZ00184 calmodulin; Provision 98.4 1.9E-06 4.1E-11 83.7 9.5 71 432-502 4-76 (149)
31 COG5126 FRQ1 Ca2+-binding prot 98.3 1.8E-06 3.9E-11 89.7 8.7 71 432-503 13-85 (160)
32 cd05022 S-100A13 S-100A13: S-1 98.2 3.9E-06 8.5E-11 79.4 8.1 72 9-80 7-83 (89)
33 cd00051 EFh EF-hand, calcium b 98.2 5.1E-06 1.1E-10 67.7 7.2 58 441-498 2-61 (63)
34 cd00252 SPARC_EC SPARC_EC; ext 98.2 5.6E-06 1.2E-10 81.9 8.4 64 434-499 43-106 (116)
35 KOG0041 Predicted Ca2+-binding 98.2 3.3E-06 7.1E-11 89.9 7.0 69 426-496 88-158 (244)
36 cd05025 S-100A1 S-100A1: S-100 98.2 8E-06 1.7E-10 76.3 8.7 70 10-79 9-87 (92)
37 cd05027 S-100B S-100B: S-100B 98.1 1.2E-05 2.6E-10 75.7 8.9 71 9-79 7-86 (88)
38 PRK09039 hypothetical protein; 98.1 0.0001 2.2E-09 84.9 18.0 100 611-710 79-185 (343)
39 PF13833 EF-hand_8: EF-hand do 98.1 5E-06 1.1E-10 70.0 5.6 49 452-500 1-52 (54)
40 PTZ00184 calmodulin; Provision 98.1 1.1E-05 2.4E-10 78.4 8.6 72 1-72 1-75 (149)
41 KOG0028 Ca2+-binding protein ( 98.1 8.9E-06 1.9E-10 84.3 7.7 64 437-500 104-169 (172)
42 cd05030 calgranulins Calgranul 98.1 1.5E-05 3.3E-10 74.6 8.5 69 437-505 6-83 (88)
43 PTZ00183 centrin; Provisional 98.1 1.3E-05 2.9E-10 79.0 8.4 61 439-499 90-152 (158)
44 cd05031 S-100A10_like S-100A10 98.0 1.9E-05 4.1E-10 74.2 8.7 70 9-78 7-85 (94)
45 cd05029 S-100A6 S-100A6: S-100 98.0 1.9E-05 4E-10 74.4 8.3 77 1-77 1-84 (88)
46 cd05026 S-100Z S-100Z: S-100Z 98.0 3.2E-05 6.9E-10 73.2 9.0 70 9-78 9-87 (93)
47 cd00213 S-100 S-100: S-100 dom 98.0 3E-05 6.4E-10 71.5 8.5 69 7-75 5-82 (88)
48 PF14658 EF-hand_9: EF-hand do 98.0 1.6E-05 3.6E-10 71.8 6.4 59 443-501 2-64 (66)
49 PF09726 Macoilin: Transmembra 98.0 0.00014 2.9E-09 90.5 16.6 56 622-677 462-517 (697)
50 PRK11637 AmiB activator; Provi 97.9 0.00069 1.5E-08 79.7 20.7 63 613-675 61-123 (428)
51 cd05023 S-100A11 S-100A11: S-1 97.9 5.1E-05 1.1E-09 71.7 9.0 70 9-78 8-86 (89)
52 KOG0034 Ca2+/calmodulin-depend 97.9 3.3E-05 7.2E-10 82.2 8.4 62 439-500 104-174 (187)
53 PRK11637 AmiB activator; Provi 97.8 0.0013 2.9E-08 77.3 21.0 62 610-671 65-126 (428)
54 PRK09039 hypothetical protein; 97.8 0.0011 2.4E-08 76.5 19.5 92 617-708 78-169 (343)
55 KOG0028 Ca2+-binding protein ( 97.8 5E-05 1.1E-09 78.9 7.6 71 432-505 26-98 (172)
56 cd00252 SPARC_EC SPARC_EC; ext 97.8 7.4E-05 1.6E-09 74.1 7.6 62 7-70 45-106 (116)
57 PF09726 Macoilin: Transmembra 97.7 0.0012 2.6E-08 82.3 18.8 44 609-652 470-513 (697)
58 smart00787 Spc7 Spc7 kinetocho 97.7 0.0034 7.3E-08 71.8 20.5 98 611-708 163-264 (312)
59 cd00051 EFh EF-hand, calcium b 97.7 0.00015 3.3E-09 59.0 7.1 59 12-70 2-62 (63)
60 TIGR02168 SMC_prok_B chromosom 97.7 0.0023 5E-08 81.9 20.8 81 627-707 817-897 (1179)
61 PF08317 Spc7: Spc7 kinetochor 97.7 0.0044 9.5E-08 70.9 21.0 52 657-708 211-262 (325)
62 KOG0031 Myosin regulatory ligh 97.6 0.00019 4.1E-09 74.4 8.3 74 430-510 23-98 (171)
63 PF13833 EF-hand_8: EF-hand do 97.6 0.00012 2.6E-09 61.7 5.5 49 23-71 1-52 (54)
64 PF12718 Tropomyosin_1: Tropom 97.6 0.0042 9.2E-08 63.8 17.5 58 675-734 79-136 (143)
65 TIGR02168 SMC_prok_B chromosom 97.6 0.0039 8.5E-08 79.9 21.1 8 66-73 39-46 (1179)
66 KOG0037 Ca2+-binding protein, 97.6 0.00023 5E-09 77.1 8.5 66 438-503 123-190 (221)
67 COG1579 Zn-ribbon protein, pos 97.6 0.0059 1.3E-07 67.6 19.3 29 719-747 162-192 (239)
68 KOG0977 Nuclear envelope prote 97.5 0.00027 5.9E-09 85.1 9.3 128 612-740 252-390 (546)
69 KOG0250 DNA repair protein RAD 97.5 0.004 8.7E-08 79.4 18.7 50 622-671 339-388 (1074)
70 KOG0030 Myosin essential light 97.5 0.00026 5.6E-09 72.3 6.8 74 433-506 5-82 (152)
71 KOG0377 Protein serine/threoni 97.4 0.00026 5.6E-09 82.5 7.3 68 439-506 547-620 (631)
72 PF12718 Tropomyosin_1: Tropom 97.4 0.0049 1.1E-07 63.3 15.8 11 720-730 129-139 (143)
73 PRK04863 mukB cell division pr 97.4 0.0064 1.4E-07 81.3 20.8 114 647-760 361-496 (1486)
74 KOG0031 Myosin regulatory ligh 97.4 0.00042 9.1E-09 71.9 7.8 62 438-499 100-163 (171)
75 PRK03918 chromosome segregatio 97.4 0.009 2E-07 75.6 20.8 30 612-641 192-221 (880)
76 COG1340 Uncharacterized archae 97.4 0.0086 1.9E-07 67.9 18.2 146 583-730 130-275 (294)
77 PLN02964 phosphatidylserine de 97.4 0.00038 8.3E-09 85.7 8.3 71 426-500 130-206 (644)
78 TIGR01843 type_I_hlyD type I s 97.4 0.0062 1.3E-07 70.0 17.6 80 670-750 197-279 (423)
79 KOG0030 Myosin essential light 97.4 0.00036 7.8E-09 71.3 6.6 59 438-497 87-147 (152)
80 KOG0041 Predicted Ca2+-binding 97.4 0.0004 8.7E-09 74.5 7.2 68 7-74 96-165 (244)
81 PF08317 Spc7: Spc7 kinetochor 97.3 0.0081 1.8E-07 68.8 17.4 10 488-497 12-21 (325)
82 PF10186 Atg14: UV radiation r 97.3 0.019 4E-07 63.4 19.1 28 719-746 132-160 (302)
83 PHA02562 46 endonuclease subun 97.2 0.017 3.7E-07 69.5 19.9 60 650-709 222-281 (562)
84 cd05024 S-100A10 S-100A10: A s 97.2 0.0022 4.8E-08 61.6 9.8 68 437-505 6-80 (91)
85 PRK02224 chromosome segregatio 97.2 0.016 3.5E-07 73.6 20.5 54 615-668 539-592 (880)
86 PRK03918 chromosome segregatio 97.2 0.016 3.4E-07 73.5 20.1 16 768-783 747-762 (880)
87 PLN02964 phosphatidylserine de 97.2 0.001 2.2E-08 82.2 9.2 67 433-499 173-241 (644)
88 COG1579 Zn-ribbon protein, pos 97.2 0.014 3E-07 64.8 17.0 98 608-710 40-137 (239)
89 cd05030 calgranulins Calgranul 97.2 0.0017 3.7E-08 61.0 8.3 68 10-77 8-84 (88)
90 PF07888 CALCOCO1: Calcium bin 97.2 0.028 6.1E-07 68.4 20.4 15 716-730 286-300 (546)
91 KOG0034 Ca2+/calmodulin-depend 97.1 0.0012 2.6E-08 70.5 8.1 64 10-73 104-176 (187)
92 PF12761 End3: Actin cytoskele 97.1 0.0043 9.3E-08 66.7 12.0 92 599-696 99-194 (195)
93 KOG0971 Microtubule-associated 97.1 0.02 4.4E-07 71.7 18.9 21 142-162 50-72 (1243)
94 COG1196 Smc Chromosome segrega 97.1 0.022 4.8E-07 75.1 20.7 96 618-713 812-907 (1163)
95 KOG0980 Actin-binding protein 97.1 0.036 7.8E-07 69.7 20.8 50 636-685 412-461 (980)
96 PF00261 Tropomyosin: Tropomyo 97.1 0.036 7.7E-07 61.0 18.9 103 608-710 73-189 (237)
97 KOG0250 DNA repair protein RAD 97.1 0.032 6.9E-07 71.6 20.7 100 611-710 279-385 (1074)
98 KOG0044 Ca2+ sensor (EF-Hand s 97.1 0.00077 1.7E-08 72.4 5.8 60 440-499 101-173 (193)
99 TIGR01843 type_I_hlyD type I s 97.1 0.025 5.3E-07 65.1 18.2 21 688-708 208-228 (423)
100 COG1196 Smc Chromosome segrega 97.1 0.023 5E-07 74.9 20.1 13 718-730 889-901 (1163)
101 COG4372 Uncharacterized protei 97.0 0.052 1.1E-06 63.2 20.2 97 612-708 136-242 (499)
102 PRK04863 mukB cell division pr 97.0 0.022 4.8E-07 76.4 19.6 97 611-707 305-407 (1486)
103 PF00261 Tropomyosin: Tropomyo 97.0 0.056 1.2E-06 59.4 19.6 89 619-707 63-151 (237)
104 PF04156 IncA: IncA protein; 97.0 0.027 5.9E-07 59.2 16.5 34 611-644 86-119 (191)
105 PF04849 HAP1_N: HAP1 N-termin 97.0 0.021 4.5E-07 65.2 16.6 119 619-742 180-298 (306)
106 KOG0978 E3 ubiquitin ligase in 97.0 0.036 7.7E-07 69.1 19.4 131 613-745 503-643 (698)
107 PF10473 CENP-F_leu_zip: Leuci 97.0 0.061 1.3E-06 55.6 18.1 78 650-732 61-138 (140)
108 KOG0980 Actin-binding protein 97.0 0.043 9.3E-07 69.0 19.7 98 613-710 372-479 (980)
109 KOG0977 Nuclear envelope prote 96.9 0.03 6.4E-07 68.2 18.0 98 611-708 104-215 (546)
110 PRK12309 transaldolase/EF-hand 96.9 0.0018 3.9E-08 76.0 7.7 56 438-504 333-388 (391)
111 PF04111 APG6: Autophagy prote 96.9 0.0048 1E-07 70.6 10.9 78 616-694 12-89 (314)
112 KOG0976 Rho/Rac1-interacting s 96.9 0.037 8E-07 68.7 18.6 105 622-728 258-401 (1265)
113 COG4942 Membrane-bound metallo 96.9 0.062 1.3E-06 63.7 20.0 69 606-674 45-113 (420)
114 PHA02562 46 endonuclease subun 96.9 0.027 5.8E-07 67.9 17.6 24 689-712 350-373 (562)
115 KOG0046 Ca2+-binding actin-bun 96.9 0.0021 4.5E-08 76.6 7.9 71 432-503 12-87 (627)
116 KOG0804 Cytoplasmic Zn-finger 96.9 0.016 3.4E-07 68.4 14.8 42 613-654 361-402 (493)
117 PF11932 DUF3450: Protein of u 96.9 0.041 8.8E-07 60.8 17.4 91 634-725 42-133 (251)
118 COG4372 Uncharacterized protei 96.9 0.06 1.3E-06 62.8 19.0 9 581-589 72-80 (499)
119 KOG0044 Ca2+ sensor (EF-Hand s 96.9 0.0023 4.9E-08 68.8 7.3 70 439-508 64-135 (193)
120 PF04156 IncA: IncA protein; 96.9 0.034 7.4E-07 58.5 16.0 95 613-707 95-189 (191)
121 COG1340 Uncharacterized archae 96.9 0.036 7.8E-07 63.0 16.8 80 606-685 20-99 (294)
122 PF14658 EF-hand_9: EF-hand do 96.9 0.0021 4.6E-08 58.5 5.8 59 14-72 2-64 (66)
123 COG3883 Uncharacterized protei 96.9 0.051 1.1E-06 61.1 17.7 55 611-665 43-97 (265)
124 PF00036 EF-hand_1: EF hand; 96.9 0.00094 2E-08 51.3 3.0 27 474-500 1-27 (29)
125 KOG0996 Structural maintenance 96.9 0.026 5.7E-07 72.5 17.2 90 611-700 424-517 (1293)
126 PF12128 DUF3584: Protein of u 96.8 0.056 1.2E-06 71.7 20.9 23 647-669 684-706 (1201)
127 PF13851 GAS: Growth-arrest sp 96.8 0.047 1E-06 59.1 16.5 91 616-710 30-120 (201)
128 PF07888 CALCOCO1: Calcium bin 96.8 0.033 7.1E-07 67.8 16.8 81 606-686 150-230 (546)
129 KOG0161 Myosin class II heavy 96.8 0.075 1.6E-06 72.5 21.4 80 614-693 902-981 (1930)
130 PF12128 DUF3584: Protein of u 96.8 0.044 9.5E-07 72.6 19.2 27 721-747 744-770 (1201)
131 PF10481 CENP-F_N: Cenp-F N-te 96.7 0.027 5.8E-07 63.1 14.0 90 611-700 16-105 (307)
132 KOG0161 Myosin class II heavy 96.7 0.065 1.4E-06 73.1 20.1 25 473-497 770-794 (1930)
133 PF05701 WEMBL: Weak chloropla 96.7 0.11 2.4E-06 63.3 20.6 66 645-710 292-357 (522)
134 PF15619 Lebercilin: Ciliary p 96.7 0.021 4.6E-07 61.6 12.9 91 617-707 58-149 (194)
135 KOG0964 Structural maintenance 96.7 0.038 8.2E-07 70.0 16.6 109 585-696 771-888 (1200)
136 TIGR03007 pepcterm_ChnLen poly 96.7 0.033 7.2E-07 66.5 15.9 15 471-485 79-93 (498)
137 COG3883 Uncharacterized protei 96.7 0.12 2.6E-06 58.3 18.9 19 689-707 182-200 (265)
138 TIGR01005 eps_transp_fam exopo 96.7 0.045 9.7E-07 68.9 17.6 17 471-487 83-99 (754)
139 KOG0933 Structural maintenance 96.7 0.092 2E-06 67.0 19.7 61 647-707 814-874 (1174)
140 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.7 0.065 1.4E-06 54.2 15.3 19 613-631 17-35 (132)
141 PF10186 Atg14: UV radiation r 96.6 0.15 3.3E-06 56.3 19.4 25 719-743 125-149 (302)
142 TIGR01005 eps_transp_fam exopo 96.6 0.05 1.1E-06 68.4 17.5 55 655-709 316-371 (754)
143 COG4942 Membrane-bound metallo 96.6 0.15 3.3E-06 60.6 20.0 17 925-941 351-370 (420)
144 TIGR00606 rad50 rad50. This fa 96.6 0.071 1.5E-06 71.2 19.5 13 924-937 1149-1162(1311)
145 KOG0996 Structural maintenance 96.6 0.085 1.8E-06 68.2 18.9 110 623-732 380-491 (1293)
146 KOG0971 Microtubule-associated 96.6 0.082 1.8E-06 66.6 18.3 93 601-695 285-390 (1243)
147 PF06008 Laminin_I: Laminin Do 96.6 0.13 2.8E-06 57.3 18.5 24 717-740 182-205 (264)
148 smart00787 Spc7 Spc7 kinetocho 96.6 0.21 4.5E-06 57.6 20.3 50 659-708 208-257 (312)
149 PRK04778 septation ring format 96.5 0.046 1E-06 67.1 15.9 62 610-671 279-340 (569)
150 PF07111 HCR: Alpha helical co 96.5 0.061 1.3E-06 66.6 16.6 126 617-743 475-605 (739)
151 KOG0037 Ca2+-binding protein, 96.5 0.0072 1.6E-07 65.9 8.0 70 438-507 56-128 (221)
152 PF00036 EF-hand_1: EF hand; 96.5 0.0026 5.7E-08 48.9 3.2 27 440-466 1-27 (29)
153 KOG4360 Uncharacterized coiled 96.5 0.077 1.7E-06 63.7 16.6 126 612-740 165-295 (596)
154 PF10168 Nup88: Nuclear pore c 96.5 0.18 3.9E-06 63.8 20.9 58 609-666 561-618 (717)
155 KOG0933 Structural maintenance 96.4 0.14 2.9E-06 65.6 19.1 69 642-710 830-898 (1174)
156 PRK12704 phosphodiesterase; Pr 96.4 0.15 3.2E-06 62.4 19.3 25 734-758 192-219 (520)
157 PF15290 Syntaphilin: Golgi-lo 96.4 0.037 8E-07 62.2 12.7 86 650-742 84-173 (305)
158 PF07111 HCR: Alpha helical co 96.4 0.22 4.8E-06 61.9 20.2 119 592-710 481-616 (739)
159 KOG4673 Transcription factor T 96.4 0.22 4.7E-06 61.6 19.8 35 716-750 608-642 (961)
160 TIGR03007 pepcterm_ChnLen poly 96.4 0.1 2.3E-06 62.3 17.4 11 779-789 439-449 (498)
161 PF04012 PspA_IM30: PspA/IM30 96.4 0.33 7.2E-06 52.4 19.6 89 616-707 54-143 (221)
162 PF15619 Lebercilin: Ciliary p 96.4 0.17 3.7E-06 54.7 17.1 86 652-738 58-143 (194)
163 KOG0038 Ca2+-binding kinase in 96.4 0.0048 1E-07 63.8 5.1 62 441-505 110-178 (189)
164 PF00038 Filament: Intermediat 96.3 0.19 4E-06 56.7 18.1 14 731-744 166-179 (312)
165 KOG4643 Uncharacterized coiled 96.3 0.28 6.1E-06 62.8 20.8 105 634-738 488-600 (1195)
166 PF13405 EF-hand_6: EF-hand do 96.3 0.0037 8E-08 47.9 3.1 27 440-466 1-27 (31)
167 PRK00106 hypothetical protein; 96.3 0.21 4.5E-06 61.3 19.3 25 734-758 207-234 (535)
168 KOG1853 LIS1-interacting prote 96.3 0.3 6.5E-06 54.6 18.6 81 623-710 40-125 (333)
169 PF15070 GOLGA2L5: Putative go 96.3 0.3 6.6E-06 60.9 20.9 14 758-771 245-258 (617)
170 TIGR00606 rad50 rad50. This fa 96.3 0.17 3.6E-06 67.9 20.0 10 919-929 1228-1237(1311)
171 PRK04778 septation ring format 96.3 0.12 2.7E-06 63.4 17.4 60 618-677 280-339 (569)
172 TIGR03319 YmdA_YtgF conserved 96.2 0.22 4.8E-06 60.8 19.2 25 734-758 186-213 (514)
173 TIGR02680 conserved hypothetic 96.2 0.2 4.3E-06 67.4 20.4 46 637-682 279-324 (1353)
174 KOG0995 Centromere-associated 96.2 0.13 2.8E-06 62.6 16.8 99 612-710 258-359 (581)
175 PRK12309 transaldolase/EF-hand 96.2 0.0093 2E-07 70.2 7.2 55 9-74 333-387 (391)
176 PF15070 GOLGA2L5: Putative go 96.2 0.097 2.1E-06 65.1 16.2 93 619-711 86-181 (617)
177 PF14073 Cep57_CLD: Centrosome 96.2 0.24 5.2E-06 53.0 16.8 93 652-744 61-159 (178)
178 PF04111 APG6: Autophagy prote 96.2 0.16 3.5E-06 58.4 16.9 145 614-767 44-211 (314)
179 PRK11281 hypothetical protein; 96.2 0.21 4.5E-06 65.8 19.8 58 651-708 124-181 (1113)
180 TIGR03017 EpsF chain length de 96.2 0.21 4.5E-06 58.8 18.1 14 472-485 79-92 (444)
181 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.2 0.22 4.7E-06 50.5 15.8 23 613-635 24-46 (132)
182 KOG0994 Extracellular matrix g 96.1 0.4 8.8E-06 62.0 20.7 81 645-727 1609-1696(1758)
183 KOG0994 Extracellular matrix g 96.1 0.26 5.6E-06 63.7 19.1 114 623-742 1615-1746(1758)
184 PF15397 DUF4618: Domain of un 96.1 0.58 1.3E-05 52.8 20.1 81 598-681 65-146 (258)
185 cd05024 S-100A10 S-100A10: A s 96.1 0.036 7.9E-07 53.4 9.2 69 10-79 8-83 (91)
186 KOG4674 Uncharacterized conser 96.1 0.17 3.7E-06 68.5 18.3 47 619-665 1277-1324(1822)
187 KOG0377 Protein serine/threoni 96.1 0.012 2.5E-07 69.3 7.0 68 9-76 546-619 (631)
188 KOG0036 Predicted mitochondria 96.0 0.013 2.9E-07 68.7 7.2 62 438-499 81-144 (463)
189 PF09789 DUF2353: Uncharacteri 96.0 0.21 4.6E-06 57.7 16.5 124 607-730 17-178 (319)
190 PF14662 CCDC155: Coiled-coil 96.0 0.66 1.4E-05 50.3 19.1 84 623-710 39-122 (193)
191 PF05667 DUF812: Protein of un 96.0 0.13 2.8E-06 63.8 15.9 25 676-700 394-418 (594)
192 KOG0036 Predicted mitochondria 96.0 0.024 5.2E-07 66.6 9.0 71 433-503 8-81 (463)
193 PF12325 TMF_TATA_bd: TATA ele 96.0 0.25 5.3E-06 50.0 14.9 87 614-701 24-114 (120)
194 PF09304 Cortex-I_coil: Cortex 96.0 0.29 6.2E-06 48.6 14.9 49 660-708 42-90 (107)
195 PRK10929 putative mechanosensi 96.0 0.25 5.5E-06 65.0 18.9 27 717-743 212-238 (1109)
196 KOG0243 Kinesin-like protein [ 96.0 0.38 8.1E-06 62.4 19.8 14 439-452 166-179 (1041)
197 PRK11281 hypothetical protein; 96.0 0.074 1.6E-06 69.9 14.1 45 666-710 132-176 (1113)
198 PF10174 Cast: RIM-binding pro 95.9 0.43 9.3E-06 60.9 20.3 108 621-730 302-409 (775)
199 TIGR03017 EpsF chain length de 95.9 0.27 5.9E-06 57.9 17.4 38 651-688 257-294 (444)
200 PF10473 CENP-F_leu_zip: Leuci 95.9 0.95 2.1E-05 47.0 19.0 85 616-707 20-104 (140)
201 PF05278 PEARLI-4: Arabidopsis 95.9 0.26 5.6E-06 55.7 16.1 93 628-730 167-259 (269)
202 PRK01156 chromosome segregatio 95.9 0.59 1.3E-05 60.2 21.5 35 676-710 416-450 (895)
203 KOG0964 Structural maintenance 95.9 0.2 4.4E-06 63.9 16.6 53 690-744 328-380 (1200)
204 PF13514 AAA_27: AAA domain 95.9 0.43 9.4E-06 63.0 20.7 56 676-731 896-951 (1111)
205 PF05701 WEMBL: Weak chloropla 95.8 0.44 9.5E-06 58.3 19.3 63 611-673 293-355 (522)
206 TIGR01000 bacteriocin_acc bact 95.8 0.7 1.5E-05 55.3 20.6 24 686-709 239-262 (457)
207 PF12325 TMF_TATA_bd: TATA ele 95.8 0.26 5.7E-06 49.8 14.4 86 648-742 30-118 (120)
208 PF05667 DUF812: Protein of un 95.8 0.53 1.1E-05 58.6 19.9 101 607-707 329-432 (594)
209 PF07106 TBPIP: Tat binding pr 95.8 0.11 2.4E-06 54.3 12.2 93 647-740 71-165 (169)
210 PF13870 DUF4201: Domain of un 95.8 0.37 7.9E-06 50.8 16.1 23 727-749 119-141 (177)
211 PRK10698 phage shock protein P 95.8 0.85 1.8E-05 50.3 19.3 41 664-704 101-141 (222)
212 PF13851 GAS: Growth-arrest sp 95.8 1.4 2.9E-05 48.1 20.6 65 616-684 65-129 (201)
213 KOG4223 Reticulocalbin, calume 95.7 0.012 2.5E-07 67.3 5.1 63 9-71 76-140 (325)
214 PRK09841 cryptic autophosphory 95.7 0.28 6.1E-06 62.0 17.6 17 579-595 235-251 (726)
215 PF05010 TACC: Transforming ac 95.7 1 2.3E-05 49.4 19.4 34 711-744 173-206 (207)
216 KOG0243 Kinesin-like protein [ 95.7 0.63 1.4E-05 60.5 20.3 14 596-609 411-424 (1041)
217 PF15066 CAGE1: Cancer-associa 95.7 0.34 7.4E-06 57.9 16.6 103 619-727 330-440 (527)
218 KOG0995 Centromere-associated 95.7 0.57 1.2E-05 57.4 18.8 86 625-710 264-352 (581)
219 KOG0040 Ca2+-binding actin-bun 95.6 0.022 4.7E-07 74.3 7.3 72 432-505 2246-2326(2399)
220 PF13202 EF-hand_5: EF hand; P 95.6 0.012 2.6E-07 43.8 3.1 25 441-465 1-25 (25)
221 KOG0979 Structural maintenance 95.6 0.58 1.3E-05 60.2 19.1 89 641-731 255-343 (1072)
222 PRK11519 tyrosine kinase; Prov 95.6 0.43 9.4E-06 60.3 18.3 11 779-789 450-460 (719)
223 KOG0288 WD40 repeat protein Ti 95.5 0.1 2.3E-06 61.3 11.7 19 687-705 52-70 (459)
224 KOG4302 Microtubule-associated 95.5 0.34 7.4E-06 60.5 16.7 142 609-751 35-205 (660)
225 PF10591 SPARC_Ca_bdg: Secrete 95.5 0.0062 1.3E-07 60.2 1.6 62 436-497 51-112 (113)
226 PF04949 Transcrip_act: Transc 95.5 1.8 3.9E-05 45.4 19.0 84 611-704 43-126 (159)
227 TIGR00634 recN DNA repair prot 95.5 0.29 6.4E-06 60.1 16.0 65 677-741 302-374 (563)
228 KOG4673 Transcription factor T 95.4 0.38 8.3E-06 59.5 16.4 137 611-749 407-575 (961)
229 KOG4302 Microtubule-associated 95.4 0.34 7.4E-06 60.5 16.4 76 613-688 61-136 (660)
230 KOG0976 Rho/Rac1-interacting s 95.4 0.48 1E-05 59.5 17.1 67 612-678 98-164 (1265)
231 PF05911 DUF869: Plant protein 95.4 0.4 8.8E-06 61.1 17.1 74 635-708 618-691 (769)
232 KOG0612 Rho-associated, coiled 95.4 0.4 8.7E-06 62.6 17.0 80 632-711 572-651 (1317)
233 KOG0018 Structural maintenance 95.3 0.72 1.6E-05 59.8 18.9 147 585-732 649-819 (1141)
234 PF10146 zf-C4H2: Zinc finger- 95.3 0.29 6.3E-06 54.3 13.9 55 691-747 54-109 (230)
235 KOG0999 Microtubule-associated 95.3 1.3 2.8E-05 54.1 19.9 30 645-674 111-140 (772)
236 KOG0804 Cytoplasmic Zn-finger 95.3 0.47 1E-05 56.6 16.1 17 432-448 85-101 (493)
237 PF12795 MscS_porin: Mechanose 95.3 0.79 1.7E-05 50.5 17.1 24 718-741 190-213 (240)
238 TIGR02680 conserved hypothetic 95.2 1.2 2.5E-05 60.4 21.5 19 488-506 175-193 (1353)
239 KOG4643 Uncharacterized coiled 95.2 0.99 2.1E-05 58.2 19.3 62 613-674 401-462 (1195)
240 PF11559 ADIP: Afadin- and alp 95.2 0.73 1.6E-05 47.3 15.4 49 660-708 71-119 (151)
241 TIGR02977 phageshock_pspA phag 95.2 3.2 6.9E-05 45.5 21.1 48 659-706 96-143 (219)
242 PF12252 SidE: Dot/Icm substra 95.2 0.46 1E-05 61.1 16.3 67 685-751 1162-1235(1439)
243 PF11932 DUF3450: Protein of u 95.2 1.3 2.9E-05 49.1 18.5 57 610-666 39-95 (251)
244 KOG0288 WD40 repeat protein Ti 95.1 0.46 9.9E-06 56.3 15.2 89 613-708 27-115 (459)
245 PRK10476 multidrug resistance 95.1 0.57 1.2E-05 53.7 16.1 54 651-704 124-180 (346)
246 PF13405 EF-hand_6: EF-hand do 95.1 0.026 5.7E-07 43.2 3.6 27 12-38 2-28 (31)
247 COG1842 PspA Phage shock prote 95.1 0.85 1.8E-05 50.6 16.6 116 590-707 29-144 (225)
248 PRK10361 DNA recombination pro 95.1 1.2 2.7E-05 54.1 19.2 36 691-726 141-178 (475)
249 TIGR01010 BexC_CtrB_KpsE polys 95.1 0.67 1.4E-05 53.7 16.6 16 692-707 244-259 (362)
250 COG5185 HEC1 Protein involved 95.1 0.84 1.8E-05 54.8 17.3 138 605-746 287-429 (622)
251 PF13805 Pil1: Eisosome compon 95.1 1.1 2.5E-05 50.9 17.7 77 634-710 82-158 (271)
252 PF00769 ERM: Ezrin/radixin/mo 95.1 0.59 1.3E-05 52.2 15.4 20 689-708 81-100 (246)
253 PF06008 Laminin_I: Laminin Do 95.1 0.71 1.5E-05 51.5 16.0 71 613-683 45-115 (264)
254 PF13870 DUF4201: Domain of un 95.0 1.1 2.3E-05 47.3 16.5 83 620-702 49-131 (177)
255 COG4913 Uncharacterized protei 95.0 0.61 1.3E-05 58.3 16.4 181 591-783 293-493 (1104)
256 PF09304 Cortex-I_coil: Cortex 95.0 0.85 1.8E-05 45.4 14.4 23 651-673 54-76 (107)
257 KOG0946 ER-Golgi vesicle-tethe 95.0 0.86 1.9E-05 57.6 17.7 61 612-672 656-716 (970)
258 PF06120 Phage_HK97_TLTM: Tail 95.0 0.57 1.2E-05 53.9 15.2 31 641-671 74-104 (301)
259 KOG2991 Splicing regulator [RN 95.0 1.8 3.8E-05 48.9 18.3 52 678-731 238-289 (330)
260 PRK10884 SH3 domain-containing 94.9 0.23 5.1E-06 54.2 11.5 12 613-624 100-111 (206)
261 PF14662 CCDC155: Coiled-coil 94.9 3.5 7.6E-05 45.0 19.9 39 591-632 17-55 (193)
262 PRK10884 SH3 domain-containing 94.9 0.29 6.4E-06 53.4 12.1 21 613-633 93-113 (206)
263 PF12795 MscS_porin: Mechanose 94.8 2.6 5.7E-05 46.5 19.5 60 650-709 80-139 (240)
264 PRK12705 hypothetical protein; 94.8 2.9 6.3E-05 51.4 21.5 31 734-764 180-213 (508)
265 COG2433 Uncharacterized conser 94.8 0.71 1.5E-05 57.0 16.2 26 734-759 531-556 (652)
266 KOG4403 Cell surface glycoprot 94.8 0.81 1.8E-05 54.4 16.0 27 439-465 68-94 (575)
267 PRK10869 recombination and rep 94.8 0.53 1.1E-05 58.0 15.4 98 645-742 258-370 (553)
268 KOG0612 Rho-associated, coiled 94.8 1.3 2.8E-05 58.2 19.0 19 26-44 156-175 (1317)
269 PRK09841 cryptic autophosphory 94.7 0.76 1.6E-05 58.3 17.1 19 692-710 341-359 (726)
270 PF04849 HAP1_N: HAP1 N-termin 94.7 0.83 1.8E-05 52.7 15.6 61 629-689 208-268 (306)
271 PF09731 Mitofilin: Mitochondr 94.7 1.2 2.6E-05 54.8 18.2 18 721-738 379-396 (582)
272 KOG0963 Transcription factor/C 94.7 0.77 1.7E-05 56.7 16.0 28 731-758 335-362 (629)
273 TIGR01000 bacteriocin_acc bact 94.7 1.3 2.7E-05 53.2 17.8 8 726-733 242-249 (457)
274 KOG4223 Reticulocalbin, calume 94.7 0.06 1.3E-06 61.8 6.4 66 438-503 162-230 (325)
275 PF10174 Cast: RIM-binding pro 94.7 2.2 4.7E-05 54.8 20.6 85 623-707 339-423 (775)
276 PF13202 EF-hand_5: EF hand; P 94.7 0.036 7.8E-07 41.3 3.2 24 13-36 2-25 (25)
277 TIGR02338 gimC_beta prefoldin, 94.6 0.83 1.8E-05 45.0 13.5 37 617-653 7-43 (110)
278 PF09730 BicD: Microtubule-ass 94.6 1.3 2.8E-05 56.2 18.4 51 621-671 49-99 (717)
279 PF13514 AAA_27: AAA domain 94.6 1.2 2.6E-05 59.0 19.1 26 719-744 302-327 (1111)
280 PF06785 UPF0242: Uncharacteri 94.6 3.1 6.7E-05 48.5 19.5 82 651-732 130-213 (401)
281 PF06120 Phage_HK97_TLTM: Tail 94.6 0.86 1.9E-05 52.5 15.4 34 650-683 76-109 (301)
282 PF14915 CCDC144C: CCDC144C pr 94.6 2.5 5.3E-05 48.7 18.7 85 657-741 139-242 (305)
283 PF10498 IFT57: Intra-flagella 94.6 0.62 1.3E-05 54.8 14.6 34 631-664 217-250 (359)
284 PRK12704 phosphodiesterase; Pr 94.6 3.1 6.7E-05 51.3 21.0 14 617-630 61-74 (520)
285 KOG4593 Mitotic checkpoint pro 94.6 2.7 5.7E-05 52.9 20.2 14 576-589 58-71 (716)
286 KOG1853 LIS1-interacting prote 94.5 5.4 0.00012 45.1 20.6 46 643-688 79-124 (333)
287 PF07851 TMPIT: TMPIT-like pro 94.5 0.19 4.1E-06 58.3 10.2 89 612-706 3-91 (330)
288 PF06160 EzrA: Septation ring 94.5 1.2 2.5E-05 55.2 17.5 9 622-630 280-288 (560)
289 PF10591 SPARC_Ca_bdg: Secrete 94.5 0.017 3.6E-07 57.2 1.5 62 7-68 51-112 (113)
290 PF04012 PspA_IM30: PspA/IM30 94.5 1.6 3.4E-05 47.4 16.5 87 611-697 56-147 (221)
291 PF12072 DUF3552: Domain of un 94.5 2.8 6.2E-05 45.4 18.3 7 623-629 63-69 (201)
292 PRK03947 prefoldin subunit alp 94.5 0.75 1.6E-05 46.7 13.2 34 613-646 6-39 (140)
293 TIGR01010 BexC_CtrB_KpsE polys 94.4 0.67 1.4E-05 53.7 14.4 84 611-694 175-260 (362)
294 KOG3478 Prefoldin subunit 6, K 94.4 1.3 2.8E-05 44.4 13.9 97 613-710 5-110 (120)
295 KOG2129 Uncharacterized conser 94.4 0.87 1.9E-05 54.0 14.9 60 651-710 204-273 (552)
296 PF09787 Golgin_A5: Golgin sub 94.4 0.85 1.8E-05 55.7 15.7 88 611-698 205-310 (511)
297 KOG0999 Microtubule-associated 94.3 1.2 2.6E-05 54.4 16.2 14 597-610 16-29 (772)
298 PF02050 FliJ: Flagellar FliJ 94.3 1.9 4.1E-05 40.8 14.9 26 660-685 50-75 (123)
299 KOG3091 Nuclear pore complex, 94.3 0.82 1.8E-05 55.3 14.8 88 611-702 360-447 (508)
300 TIGR00634 recN DNA repair prot 94.2 1.5 3.3E-05 54.0 17.5 90 649-747 302-395 (563)
301 PF07798 DUF1640: Protein of u 94.2 3 6.5E-05 44.3 17.5 31 648-678 73-103 (177)
302 COG1842 PspA Phage shock prote 94.2 2.8 6.1E-05 46.6 17.8 74 637-710 95-186 (225)
303 TIGR00998 8a0101 efflux pump m 94.1 1.2 2.7E-05 50.3 15.4 19 650-668 117-135 (334)
304 PF06818 Fez1: Fez1; InterPro 94.1 2.7 5.8E-05 46.2 17.0 125 598-732 12-150 (202)
305 KOG4677 Golgi integral membran 94.1 0.84 1.8E-05 54.5 14.1 96 611-707 257-354 (554)
306 PF05911 DUF869: Plant protein 94.1 2.5 5.5E-05 54.2 19.3 132 612-743 616-756 (769)
307 PRK11519 tyrosine kinase; Prov 94.1 0.91 2E-05 57.5 15.6 22 612-633 273-294 (719)
308 PF10168 Nup88: Nuclear pore c 94.0 0.9 1.9E-05 57.8 15.4 50 636-685 567-616 (717)
309 KOG4572 Predicted DNA-binding 94.0 1.3 2.7E-05 56.0 16.0 62 623-684 964-1031(1424)
310 KOG0042 Glycerol-3-phosphate d 94.0 0.1 2.2E-06 63.5 6.8 79 424-503 579-659 (680)
311 PF06818 Fez1: Fez1; InterPro 94.0 2.1 4.6E-05 46.9 16.0 123 589-711 14-152 (202)
312 PF05010 TACC: Transforming ac 93.9 6.4 0.00014 43.4 19.7 37 633-669 68-104 (207)
313 PF06160 EzrA: Septation ring 93.9 1.2 2.7E-05 55.0 16.0 32 679-710 375-406 (560)
314 PRK12705 hypothetical protein; 93.9 4.1 8.9E-05 50.2 20.0 22 692-713 118-139 (508)
315 PLN03229 acetyl-coenzyme A car 93.9 0.91 2E-05 57.4 14.8 60 695-758 576-639 (762)
316 COG0497 RecN ATPase involved i 93.9 0.86 1.9E-05 56.3 14.3 46 601-646 159-204 (557)
317 TIGR03319 YmdA_YtgF conserved 93.9 3.1 6.7E-05 51.2 19.1 8 762-769 191-198 (514)
318 PF10498 IFT57: Intra-flagella 93.8 3.2 6.9E-05 49.1 18.4 50 666-715 270-326 (359)
319 PF15290 Syntaphilin: Golgi-lo 93.8 0.87 1.9E-05 51.7 13.0 100 601-713 73-173 (305)
320 KOG2891 Surface glycoprotein [ 93.8 2.8 6.1E-05 47.7 16.8 26 683-708 400-425 (445)
321 PRK03598 putative efflux pump 93.7 1.5 3.2E-05 50.1 15.2 53 685-741 147-199 (331)
322 PRK09343 prefoldin subunit bet 93.7 0.74 1.6E-05 46.3 11.3 43 691-742 72-114 (121)
323 PF02050 FliJ: Flagellar FliJ 93.7 4.4 9.5E-05 38.3 16.0 20 613-632 12-31 (123)
324 PF03148 Tektin: Tektin family 93.7 4.8 0.0001 47.8 19.7 73 613-685 229-302 (384)
325 PRK06800 fliH flagellar assemb 93.7 1.5 3.3E-05 47.4 13.9 64 685-750 86-152 (228)
326 smart00502 BBC B-Box C-termina 93.7 3 6.6E-05 40.0 15.1 11 695-705 77-87 (127)
327 PRK00106 hypothetical protein; 93.7 4 8.6E-05 50.6 19.4 9 762-770 212-220 (535)
328 PF02994 Transposase_22: L1 tr 93.7 0.084 1.8E-06 61.9 5.3 91 641-733 91-185 (370)
329 KOG0978 E3 ubiquitin ligase in 93.6 4.5 9.8E-05 51.3 20.0 67 647-713 523-589 (698)
330 PRK09343 prefoldin subunit bet 93.6 1.9 4.2E-05 43.4 14.1 41 613-653 7-47 (121)
331 PRK15178 Vi polysaccharide exp 93.6 1.4 3.1E-05 53.1 15.3 11 731-741 373-383 (434)
332 KOG4572 Predicted DNA-binding 93.6 1.5 3.3E-05 55.4 15.6 42 633-674 994-1035(1424)
333 COG3206 GumC Uncharacterized p 93.6 2.3 5E-05 51.0 17.2 83 647-736 305-389 (458)
334 TIGR02977 phageshock_pspA phag 93.6 4.4 9.6E-05 44.4 17.9 13 618-630 57-69 (219)
335 KOG0018 Structural maintenance 93.5 1.3 2.9E-05 57.4 15.6 73 636-708 678-757 (1141)
336 PF10146 zf-C4H2: Zinc finger- 93.5 1.9 4.2E-05 48.0 15.1 22 632-653 37-58 (230)
337 KOG0239 Kinesin (KAR3 subfamil 93.5 1.8 3.8E-05 54.8 16.5 49 659-707 224-272 (670)
338 PF15035 Rootletin: Ciliary ro 93.5 3.8 8.2E-05 44.3 16.8 81 620-700 16-119 (182)
339 PF09755 DUF2046: Uncharacteri 93.5 4.6 9.9E-05 46.9 18.3 35 654-688 112-147 (310)
340 PF14915 CCDC144C: CCDC144C pr 93.5 4.4 9.6E-05 46.7 18.0 67 622-688 139-205 (305)
341 TIGR02473 flagell_FliJ flagell 93.5 4.5 9.8E-05 40.3 16.4 42 659-700 65-106 (141)
342 PF09728 Taxilin: Myosin-like 93.4 3.7 8.1E-05 47.5 17.6 112 613-730 29-152 (309)
343 PF08581 Tup_N: Tup N-terminal 93.4 0.71 1.5E-05 43.7 9.8 68 657-729 6-73 (79)
344 TIGR03794 NHPM_micro_HlyD NHPM 93.3 2.1 4.5E-05 50.7 16.0 23 720-742 227-249 (421)
345 PRK05689 fliJ flagellar biosyn 93.3 3 6.5E-05 42.5 15.1 81 620-700 23-109 (147)
346 KOG0963 Transcription factor/C 93.3 7 0.00015 48.8 20.4 27 683-709 242-268 (629)
347 COG3096 MukB Uncharacterized p 93.3 3.3 7.2E-05 52.2 17.6 102 629-732 986-1106(1480)
348 PF04582 Reo_sigmaC: Reovirus 93.3 0.079 1.7E-06 61.1 4.1 98 613-710 35-132 (326)
349 COG3206 GumC Uncharacterized p 93.2 2.5 5.5E-05 50.6 16.7 44 664-707 287-330 (458)
350 PF03962 Mnd1: Mnd1 family; I 93.2 1.1 2.4E-05 48.3 12.3 29 613-641 69-97 (188)
351 KOG0946 ER-Golgi vesicle-tethe 93.2 1.6 3.4E-05 55.4 15.1 48 657-704 680-727 (970)
352 KOG1937 Uncharacterized conser 93.2 4.1 8.9E-05 49.1 17.6 14 731-744 404-418 (521)
353 KOG0962 DNA repair protein RAD 93.1 4.5 9.7E-05 54.1 19.6 51 613-663 878-928 (1294)
354 PRK00286 xseA exodeoxyribonucl 93.1 3.5 7.7E-05 49.2 17.6 7 779-785 398-404 (438)
355 PF15294 Leu_zip: Leucine zipp 93.1 2 4.3E-05 49.1 14.6 86 648-736 190-276 (278)
356 KOG4809 Rab6 GTPase-interactin 93.1 3.1 6.7E-05 51.0 16.7 83 612-694 330-412 (654)
357 COG0497 RecN ATPase involved i 93.1 2 4.3E-05 53.2 15.6 20 727-746 370-390 (557)
358 COG1382 GimC Prefoldin, chaper 93.1 1.4 3E-05 44.8 11.9 33 680-712 81-113 (119)
359 KOG4674 Uncharacterized conser 93.0 2.5 5.4E-05 58.0 17.5 27 641-667 1004-1030(1822)
360 KOG4593 Mitotic checkpoint pro 93.0 6.1 0.00013 49.8 19.6 8 733-740 257-264 (716)
361 PF09730 BicD: Microtubule-ass 93.0 3.6 7.8E-05 52.4 18.1 17 716-732 131-147 (717)
362 TIGR02971 heterocyst_DevB ABC 93.0 4.3 9.3E-05 46.1 17.4 21 721-741 180-200 (327)
363 PF14788 EF-hand_10: EF hand; 93.0 0.19 4E-06 44.1 5.0 46 455-500 1-48 (51)
364 PF07889 DUF1664: Protein of u 93.0 1.6 3.5E-05 44.7 12.4 76 611-689 48-123 (126)
365 PRK10869 recombination and rep 93.0 3.4 7.3E-05 51.2 17.6 85 649-746 297-389 (553)
366 KOG0982 Centrosomal protein Nu 93.0 8.5 0.00018 46.3 19.7 80 629-708 285-364 (502)
367 PF14362 DUF4407: Domain of un 92.9 1.6 3.5E-05 49.5 13.7 18 689-706 195-212 (301)
368 PF12126 DUF3583: Protein of u 92.9 1.6 3.5E-05 49.9 13.3 50 691-744 69-125 (324)
369 PF05700 BCAS2: Breast carcino 92.9 1.9 4.1E-05 47.4 13.7 32 682-713 174-205 (221)
370 PRK07720 fliJ flagellar biosyn 92.9 3.9 8.3E-05 41.8 15.1 40 661-700 70-109 (146)
371 cd00632 Prefoldin_beta Prefold 92.8 2.2 4.7E-05 41.6 12.7 34 620-653 6-39 (105)
372 COG0419 SbcC ATPase involved i 92.8 4.8 0.0001 52.5 19.5 10 719-728 360-369 (908)
373 COG2433 Uncharacterized conser 92.8 1 2.3E-05 55.6 12.6 65 435-505 301-367 (652)
374 TIGR02231 conserved hypothetic 92.8 0.94 2E-05 55.2 12.4 98 611-711 76-173 (525)
375 PF10212 TTKRSYEDQ: Predicted 92.8 1.6 3.4E-05 53.4 14.0 26 677-702 488-513 (518)
376 KOG0046 Ca2+-binding actin-bun 92.8 0.24 5.1E-06 60.0 7.0 67 5-72 14-85 (627)
377 KOG2196 Nuclear porin [Nuclear 92.7 4 8.6E-05 45.9 15.8 59 598-656 80-142 (254)
378 PRK10246 exonuclease subunit S 92.7 5.8 0.00013 52.6 20.2 7 920-926 981-987 (1047)
379 PRK00409 recombination and DNA 92.7 3.2 6.9E-05 53.5 17.4 12 59-70 82-93 (782)
380 TIGR02231 conserved hypothetic 92.7 0.78 1.7E-05 55.9 11.6 45 680-733 128-172 (525)
381 PF09763 Sec3_C: Exocyst compl 92.6 4.1 8.8E-05 51.6 17.9 112 615-726 25-161 (701)
382 KOG1003 Actin filament-coating 92.5 11 0.00024 41.3 18.4 44 623-666 56-99 (205)
383 TIGR01541 tape_meas_lam_C phag 92.5 7 0.00015 45.8 18.4 12 696-707 96-107 (332)
384 KOG2391 Vacuolar sorting prote 92.5 1.1 2.3E-05 52.3 11.5 26 450-479 103-128 (365)
385 TIGR02971 heterocyst_DevB ABC 92.5 7.9 0.00017 44.0 18.5 8 723-730 189-196 (327)
386 PF09602 PhaP_Bmeg: Polyhydrox 92.5 3.8 8.3E-05 43.7 14.7 11 722-732 116-126 (165)
387 PF13166 AAA_13: AAA domain 92.5 4.2 9.1E-05 51.0 17.8 51 694-746 414-474 (712)
388 PF13949 ALIX_LYPXL_bnd: ALIX 92.4 6.7 0.00015 43.9 17.6 79 629-707 24-115 (296)
389 PF15450 DUF4631: Domain of un 92.4 2.7 5.9E-05 51.3 15.2 125 617-741 17-152 (531)
390 TIGR00237 xseA exodeoxyribonuc 92.4 5 0.00011 48.3 17.4 7 779-785 393-399 (432)
391 COG4717 Uncharacterized conser 92.3 4.9 0.00011 51.7 17.7 102 606-707 620-753 (984)
392 PRK10698 phage shock protein P 92.3 4.7 0.0001 44.6 16.0 42 643-684 94-135 (222)
393 KOG1937 Uncharacterized conser 92.3 9.4 0.0002 46.2 19.0 50 629-678 267-316 (521)
394 KOG2751 Beclin-like protein [S 92.3 3.3 7.3E-05 49.6 15.4 160 631-793 194-386 (447)
395 PF03148 Tektin: Tektin family 92.2 5.5 0.00012 47.3 17.4 78 623-700 221-303 (384)
396 PF14282 FlxA: FlxA-like prote 92.2 0.56 1.2E-05 46.2 7.8 31 675-705 50-80 (106)
397 KOG0962 DNA repair protein RAD 92.2 5.6 0.00012 53.3 18.7 8 719-726 937-944 (1294)
398 KOG3215 Uncharacterized conser 92.2 8.1 0.00018 42.6 16.9 85 660-744 87-181 (222)
399 KOG4251 Calcium binding protei 92.1 0.12 2.6E-06 57.6 3.3 61 437-497 99-164 (362)
400 PLN03188 kinesin-12 family pro 92.1 6.7 0.00015 52.4 19.0 177 570-747 852-1187(1320)
401 COG2882 FliJ Flagellar biosynt 92.1 5.8 0.00013 41.8 15.3 82 613-694 16-103 (148)
402 COG3096 MukB Uncharacterized p 92.0 9.2 0.0002 48.6 19.0 131 624-761 345-497 (1480)
403 COG5185 HEC1 Protein involved 92.0 3.8 8.2E-05 49.6 15.4 56 675-732 329-394 (622)
404 KOG0979 Structural maintenance 92.0 6.6 0.00014 51.3 18.5 14 434-447 125-138 (1072)
405 PF00435 Spectrin: Spectrin re 92.0 3.6 7.7E-05 37.4 12.4 100 630-743 4-103 (105)
406 PRK10246 exonuclease subunit S 92.0 6.7 0.00014 52.1 19.5 41 668-708 716-756 (1047)
407 PF10267 Tmemb_cc2: Predicted 91.9 11 0.00023 45.4 19.2 92 609-703 222-318 (395)
408 PF09755 DUF2046: Uncharacteri 91.9 13 0.00029 43.2 19.2 53 616-674 51-103 (310)
409 PRK06569 F0F1 ATP synthase sub 91.9 3.3 7.1E-05 43.8 13.4 86 611-696 60-152 (155)
410 PF06705 SF-assemblin: SF-asse 91.9 13 0.00029 41.3 18.9 20 689-708 120-139 (247)
411 PF05622 HOOK: HOOK protein; 91.9 0.048 1E-06 68.6 0.0 10 497-506 145-154 (713)
412 KOG4065 Uncharacterized conser 91.8 0.25 5.5E-06 49.8 5.0 65 432-498 62-142 (144)
413 COG4477 EzrA Negative regulato 91.8 3.1 6.7E-05 51.0 14.8 56 675-733 374-430 (570)
414 PF05278 PEARLI-4: Arabidopsis 91.8 6.8 0.00015 44.8 16.5 66 636-708 188-253 (269)
415 PF09731 Mitofilin: Mitochondr 91.8 11 0.00025 46.5 20.0 27 752-779 453-480 (582)
416 PF12004 DUF3498: Domain of un 91.7 0.05 1.1E-06 65.8 0.0 82 613-694 369-451 (495)
417 TIGR00237 xseA exodeoxyribonuc 91.7 2.7 5.9E-05 50.5 14.3 8 753-760 390-397 (432)
418 PF12329 TMF_DNA_bd: TATA elem 91.7 1.2 2.6E-05 41.5 9.0 60 649-708 6-65 (74)
419 KOG4360 Uncharacterized coiled 91.7 5.4 0.00012 48.7 16.4 52 651-702 236-287 (596)
420 PF13166 AAA_13: AAA domain 91.7 3.9 8.4E-05 51.3 16.3 54 677-732 418-471 (712)
421 TIGR03545 conserved hypothetic 91.7 2 4.4E-05 53.2 13.5 72 626-707 190-261 (555)
422 PF05483 SCP-1: Synaptonemal c 91.7 8.3 0.00018 48.6 18.3 141 597-741 500-679 (786)
423 PF01576 Myosin_tail_1: Myosin 91.7 0.051 1.1E-06 69.8 0.0 89 612-700 179-281 (859)
424 COG4026 Uncharacterized protei 91.6 1 2.2E-05 49.8 9.6 79 621-706 129-207 (290)
425 KOG0240 Kinesin (SMY1 subfamil 91.6 5.4 0.00012 49.4 16.5 45 633-677 469-513 (607)
426 KOG4603 TBP-1 interacting prot 91.6 3.8 8.3E-05 44.0 13.4 67 620-691 79-145 (201)
427 smart00054 EFh EF-hand, calciu 91.6 0.21 4.5E-06 34.6 3.1 25 475-499 2-26 (29)
428 PRK00286 xseA exodeoxyribonucl 91.6 2.4 5.1E-05 50.7 13.7 41 667-707 325-367 (438)
429 KOG4460 Nuclear pore complex, 91.6 7.8 0.00017 47.8 17.5 60 668-732 661-721 (741)
430 cd07627 BAR_Vps5p The Bin/Amph 91.6 17 0.00037 39.7 19.1 51 692-744 117-167 (216)
431 KOG0038 Ca2+-binding kinase in 91.6 0.28 6.2E-06 51.2 5.1 55 15-69 113-174 (189)
432 KOG1003 Actin filament-coating 91.5 14 0.00031 40.6 17.8 33 657-689 125-157 (205)
433 PF13094 CENP-Q: CENP-Q, a CEN 91.5 1.7 3.8E-05 45.1 10.9 46 653-698 39-84 (160)
434 PF05384 DegS: Sensor protein 91.4 11 0.00024 40.1 16.7 60 651-710 58-118 (159)
435 KOG2129 Uncharacterized conser 91.4 6.7 0.00014 46.9 16.4 75 656-750 247-322 (552)
436 PRK10476 multidrug resistance 91.4 5.6 0.00012 45.8 16.0 16 655-670 121-136 (346)
437 PF09789 DUF2353: Uncharacteri 91.4 7.3 0.00016 45.5 16.6 19 714-732 197-215 (319)
438 PRK07352 F0F1 ATP synthase sub 91.4 5.8 0.00013 41.8 14.8 17 691-707 131-147 (174)
439 cd00176 SPEC Spectrin repeats, 91.3 10 0.00022 38.7 16.1 16 762-777 183-198 (213)
440 KOG4807 F-actin binding protei 91.3 5 0.00011 47.6 15.2 53 654-706 420-472 (593)
441 KOG0040 Ca2+-binding actin-bun 91.3 0.34 7.3E-06 64.0 6.5 66 5-70 2248-2322(2399)
442 COG3524 KpsE Capsule polysacch 91.2 1.8 3.9E-05 49.9 11.4 30 611-640 184-213 (372)
443 PF13863 DUF4200: Domain of un 91.2 7.1 0.00015 38.7 14.4 89 613-708 18-106 (126)
444 PF05557 MAD: Mitotic checkpoi 91.2 0.062 1.3E-06 67.7 0.0 144 598-741 141-309 (722)
445 PF09728 Taxilin: Myosin-like 91.1 15 0.00032 42.8 18.8 83 647-738 222-304 (309)
446 PF05335 DUF745: Protein of un 91.1 4.8 0.0001 43.8 14.0 12 719-730 150-161 (188)
447 PF10475 DUF2450: Protein of u 91.0 13 0.00028 42.3 18.2 51 692-742 143-194 (291)
448 COG5293 Predicted ATPase [Gene 91.0 5.5 0.00012 48.2 15.3 46 690-739 316-361 (591)
449 KOG3647 Predicted coiled-coil 91.0 3.5 7.6E-05 46.8 13.1 51 632-682 110-160 (338)
450 TIGR03752 conj_TIGR03752 integ 91.0 1.7 3.6E-05 52.7 11.4 14 957-970 346-359 (472)
451 PF12252 SidE: Dot/Icm substra 90.8 4.5 9.8E-05 52.8 15.3 41 711-751 1266-1320(1439)
452 KOG1655 Protein involved in va 90.8 12 0.00027 41.0 16.5 104 609-732 29-138 (218)
453 COG5283 Phage-related tail pro 90.8 5.5 0.00012 52.8 16.3 63 633-695 56-118 (1213)
454 PF09787 Golgin_A5: Golgin sub 90.7 4.3 9.2E-05 49.8 14.8 36 650-685 276-311 (511)
455 PF15397 DUF4618: Domain of un 90.7 19 0.0004 41.2 18.5 23 611-633 86-108 (258)
456 KOG0247 Kinesin-like protein [ 90.7 5.4 0.00012 50.6 15.5 42 629-670 522-563 (809)
457 PF11180 DUF2968: Protein of u 90.6 2.5 5.3E-05 46.0 11.2 32 675-706 153-184 (192)
458 KOG1854 Mitochondrial inner me 90.5 5.2 0.00011 50.0 15.1 23 618-640 316-338 (657)
459 PF15254 CCDC14: Coiled-coil d 90.5 11 0.00024 48.2 18.0 30 651-680 458-487 (861)
460 PF11180 DUF2968: Protein of u 90.5 8.8 0.00019 41.9 15.2 60 651-710 122-181 (192)
461 PF11172 DUF2959: Protein of u 90.3 17 0.00037 40.1 17.2 102 631-733 61-183 (201)
462 PF05266 DUF724: Protein of un 90.3 4.3 9.4E-05 44.1 12.9 15 716-730 162-176 (190)
463 PRK11546 zraP zinc resistance 90.3 1.4 3.1E-05 45.9 8.9 58 611-675 52-109 (143)
464 PRK10361 DNA recombination pro 90.3 29 0.00063 42.8 21.0 12 719-730 146-157 (475)
465 PF12004 DUF3498: Domain of un 90.3 0.083 1.8E-06 64.0 0.0 31 661-691 450-480 (495)
466 PF06248 Zw10: Centromere/kine 90.3 7.1 0.00015 48.5 16.5 18 692-709 124-141 (593)
467 KOG2991 Splicing regulator [RN 90.2 5.5 0.00012 45.1 13.7 93 585-682 166-270 (330)
468 CHL00019 atpF ATP synthase CF0 90.2 7.6 0.00016 41.4 14.4 17 691-707 136-152 (184)
469 PF09738 DUF2051: Double stran 90.2 3.1 6.8E-05 48.1 12.3 88 650-746 79-176 (302)
470 PF05335 DUF745: Protein of un 90.2 16 0.00035 39.9 16.9 96 613-708 67-162 (188)
471 KOG0579 Ste20-like serine/thre 90.1 25 0.00053 44.8 20.0 27 631-657 846-872 (1187)
472 TIGR02338 gimC_beta prefoldin, 90.1 4.8 0.0001 39.7 12.0 30 613-642 10-39 (110)
473 cd00176 SPEC Spectrin repeats, 90.0 13 0.00029 37.9 15.6 27 716-742 182-208 (213)
474 PF02601 Exonuc_VII_L: Exonucl 90.0 7.4 0.00016 44.5 15.2 12 692-703 215-226 (319)
475 KOG2751 Beclin-like protein [S 90.0 6.3 0.00014 47.4 14.7 60 615-676 145-204 (447)
476 PF10267 Tmemb_cc2: Predicted 90.0 5.3 0.00011 47.9 14.3 21 690-710 298-318 (395)
477 PF14197 Cep57_CLD_2: Centroso 90.0 2.4 5.2E-05 39.3 9.0 59 617-675 9-67 (69)
478 TIGR01069 mutS2 MutS2 family p 89.9 7.1 0.00015 50.4 16.4 7 59-65 79-85 (771)
479 PF02841 GBP_C: Guanylate-bind 89.9 9.2 0.0002 43.7 15.8 15 718-732 282-296 (297)
480 smart00502 BBC B-Box C-termina 89.9 14 0.00031 35.4 14.9 17 691-707 80-96 (127)
481 PF01920 Prefoldin_2: Prefoldi 89.8 3.9 8.5E-05 38.9 10.9 25 623-647 8-32 (106)
482 PRK00409 recombination and DNA 89.8 7.3 0.00016 50.3 16.4 17 691-707 578-594 (782)
483 PRK13455 F0F1 ATP synthase sub 89.8 21 0.00045 38.1 17.3 124 598-737 60-184 (184)
484 cd00890 Prefoldin Prefoldin is 89.7 3.4 7.3E-05 40.7 10.7 94 615-709 1-127 (129)
485 TIGR03794 NHPM_micro_HlyD NHPM 89.7 14 0.0003 44.0 17.6 144 594-737 91-251 (421)
486 PF03938 OmpH: Outer membrane 89.7 2.6 5.7E-05 43.1 10.2 109 636-746 24-132 (158)
487 PF15450 DUF4631: Domain of un 89.7 22 0.00048 43.9 19.1 148 586-737 334-500 (531)
488 PF07200 Mod_r: Modifier of ru 89.6 27 0.00058 35.9 18.4 139 602-743 6-150 (150)
489 COG1382 GimC Prefoldin, chaper 89.6 3.6 7.9E-05 41.9 10.8 74 670-743 7-100 (119)
490 PF06428 Sec2p: GDP/GTP exchan 89.6 0.22 4.7E-06 49.0 2.2 89 627-715 1-90 (100)
491 KOG2891 Surface glycoprotein [ 89.6 8.8 0.00019 43.9 14.8 117 587-703 312-434 (445)
492 cd07651 F-BAR_PombeCdc15_like 89.5 31 0.00066 38.1 18.9 142 598-743 59-209 (236)
493 PF15456 Uds1: Up-regulated Du 89.5 4.4 9.5E-05 41.4 11.4 79 655-743 22-111 (124)
494 KOG0240 Kinesin (SMY1 subfamil 89.5 13 0.00028 46.2 17.1 169 591-759 384-560 (607)
495 PF01920 Prefoldin_2: Prefoldi 89.5 4.3 9.3E-05 38.6 10.9 72 672-743 1-92 (106)
496 PRK10780 periplasmic chaperone 89.5 5.1 0.00011 42.1 12.3 106 636-746 31-139 (165)
497 KOG2008 BTK-associated SH3-dom 89.5 11 0.00023 43.9 15.5 155 595-754 16-193 (426)
498 cd07653 F-BAR_CIP4-like The F- 89.5 19 0.00041 39.7 17.3 134 609-743 72-221 (251)
499 smart00054 EFh EF-hand, calciu 89.4 0.38 8.3E-06 33.3 2.9 26 440-465 1-26 (29)
500 PF05483 SCP-1: Synaptonemal c 89.4 12 0.00025 47.5 16.8 126 612-739 175-301 (786)
No 1
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-47 Score=469.45 Aligned_cols=587 Identities=29% Similarity=0.394 Sum_probs=379.0
Q ss_pred CCCc-CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhcC
Q 000960 1 MAGQ-TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (1208)
Q Consensus 1 Ma~k-t~Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G 79 (1208)
|+.. .+.+..+|+.+|+.+|+..+|+|+|.+++.||.++||+..+|.+||.++|..+.|+|++.+||+|||||++||+|
T Consensus 1 ~~~~~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~ 80 (847)
T KOG0998|consen 1 MSLGLSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSG 80 (847)
T ss_pred CCCCCCCCccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCccccccccccchHhhhhhcc
Confidence 3344 667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhccCCCccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccC
Q 000960 80 RELTPDIVKAALYGPASARIPAPQINLAAMPSSHSRVGAPASQVSGAPSPQNVSVRGPQGLGNASTNQQSPPSQSNHFVR 159 (1208)
Q Consensus 80 ~eLspe~Lp~aL~~Pa~~~iP~P~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~qq~~p~~~~~~~r 159 (1208)
++++...+ .++...+|+|+++....|.++.+..++ .++. .+.+.++.+....+.
T Consensus 81 ~~~~~~~~-----~~~~~~pp~~~~~~~~~~~~~~~~~~s---------------~~~~-~p~~~~qe~aky~q~----- 134 (847)
T KOG0998|consen 81 RELSAKKV-----LPASAVPPPPKISHDTSPPSRPSSSTS---------------AAPF-VPAITPQEQAKYDQI----- 134 (847)
T ss_pred cCcCcccc-----ccccCCCCCCccCccCCCcccCCCCCC---------------Cccc-CCCCCHHHHHHHHHH-----
Confidence 99977765 355677888877777666554332210 0000 112222222221111
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCccccCCccccCCCCCccCCCCCCCCCCCCCCCCCCCcCCCC
Q 000960 160 TPQAVLPGTTLHPQQVLSGQSMPSGGTMTAPRPPTSNVSTDWLGGSTVSPLAGSTTQLPNRGSSPSLPQEGFGLPASSLA 239 (1208)
Q Consensus 160 ~~~~~~~~~~~~P~~~~~~~g~p~~g~~~~~~~~~s~l~~d~l~~~~~~~~~g~~~~~~~rg~~p~~~~~~f~~~~~~~~ 239 (1208)
++ .+.| ++|+ ++|+.++||+++++|+.+|||.+|. ++++++.+.+++.+|.+
T Consensus 135 -f~------s~~p-----~~g~-~sg~~~~pil~~s~Lp~~~l~~iw~---------l~d~d~~g~Ld~~ef~~------ 186 (847)
T KOG0998|consen 135 -FR------SLSP-----SNGL-LSGDKAKPILLNSKLPSDVLGRIWE---------LSDIDKDGNLDRDEFAV------ 186 (847)
T ss_pred -Hh------ccCC-----CCCc-cccchhhhhhhcCCCChhhhccccc---------cccccccCCCChhhhhh------
Confidence 11 2222 3788 8999999999999999999999999 78888889988777766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccce
Q 000960 240 PSVQPRPPITSGGRAGSPLAGTTSQVSDRGISASSTLDRFGLP--ASSVAPSVQPRPPGTSAQTPATAPKPQAPDSKSLV 317 (1208)
Q Consensus 240 ~~~~~rp~~~~~~~~~~p~~~~~~~~~~~~~~a~~~~~~~~~~--~~~v~~~~~~~~~~s~~~~p~~~~~~~~~~~k~~~ 317 (1208)
|||+++. .|. ..++|. -.++.+ .+++. ..+.
T Consensus 187 --------------------------------am~l~~~-~l~~~~~p~P~----------~~p~~l---Ipps~-~~~~ 219 (847)
T KOG0998|consen 187 --------------------------------AMHLIND-LLNGNSEPVPS----------RLPPSL---IPPSK-SELS 219 (847)
T ss_pred --------------------------------hhhHHHH-HhhcccCCCCc----------cCCccc---CCcch-hccc
Confidence 5666665 333 223331 111111 11111 1112
Q ss_pred eccCCCCCCCccCCcccCCCCCCCCCCccCCCCCCCCCccCCCCCCCCCCCCCCCCccccccCCCCCCCccccCCccccc
Q 000960 318 VSGNGFSSDSLFGDVFSASPVQPKQDVAISGSVPTSTASVPASPAPKPSLKAGPVEPVQHAFSQPPVGGQYQQGQSAGKQ 397 (1208)
Q Consensus 318 ~~gng~~S~~~~gd~fsa~p~~p~~~~~~~~~~p~ss~~~P~s~~~~p~~~~~~~d~lqs~~~~~~~~~~~~~~~~~~~~ 397 (1208)
..+..++.+...+. .+.+..+ ...+++.+.+ ++.++.++...
T Consensus 220 ~~~~~~~~~~~~~~------~~~~~~~------~~~~~l~~~s--------------------------~~~~~~s~~~~ 261 (847)
T KOG0998|consen 220 ANSSSKAIPFSQPF------LASMASP------TTLSSLVDLS--------------------------ALNSNPSLSSL 261 (847)
T ss_pred ccCccccccccccc------ccccccc------cccccccchh--------------------------cccCCcccccc
Confidence 22222222222111 0001100 0111111111 11111222111
Q ss_pred cccccccCCCCCCCCCcccCcCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHH
Q 000960 398 NQQFAVKSTPAAASTGFPIGALNSTSSQSHVPW-PKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLK 476 (1208)
Q Consensus 398 ~~~~~~~~~~~~~sp~~~~g~~~~~~~~~~~~W-p~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~ 476 (1208)
... ...+....| ++|++.++.+|.++|..+|++++|+|++.+++.+|+-++|+...|+
T Consensus 262 ~~~---------------------~~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~ 320 (847)
T KOG0998|consen 262 SLA---------------------SSMQLIVSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLA 320 (847)
T ss_pred ccc---------------------cccccccccCcccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhh
Confidence 110 122334445 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCcCHHHHHHHHHHHHHh-hcCCCCCCCCCCCCCCCcccccCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q 000960 477 QVWDLSDQDNDGMLSLKEFCTALYLMERY-REGRPLPTMLPSTIMPDEALFSTTSQPQAP--HVSGTWGPVAGVQQPHAS 553 (1208)
Q Consensus 477 qIW~LaD~D~DGkLdfdEFvvAM~LI~r~-l~G~~LP~~LPp~L~Pp~~~~~~~~~P~~~--~~~~~~~~~~~~~Q~~g~ 553 (1208)
++|.++|++++|.|+++||+.+||++.++ .+|+.||.+||.+|+|++. +.+..+... ++ ..|.......++..+
T Consensus 321 ~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~~~g~~lP~vl~~s~~p~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 397 (847)
T KOG0998|consen 321 HVWLLADTQNTGTLSKDEFALAMHLLEQKRAEGRSLPSVLPSSLIPSEN--RKQTNPTTRASTA-ESPSSEQSSLAELKS 397 (847)
T ss_pred hhhhhcchhccCcccccccchhhhhhhhhhhcCCCCcccccccccCccc--cccCCcccccccc-ccCCccccccccccc
Confidence 99999999999999999999999999999 8999999999999999842 222222221 11 122222111111111
Q ss_pred -----CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHhhhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000960 554 -----RP-PTGKPPRPFPVPQADRSVQTTPQKSKVPELEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSRE 627 (1208)
Q Consensus 554 -----~p-t~~kPp~p~l~pq~d~~~~~~~~ks~~P~ldd~ll~q~s~ee~~~l~~~~qEatEa~KKl~elE~EI~ksRe 627 (1208)
.. ...|+.+ .+.+......+.....+.+ ++..++.+++....+.+. ...++++|+.++..++..+++
T Consensus 398 ~~~~~~~~~~~k~~~----~~~~~~~~~~~~~~~s~~~--~~~~~l~~~~s~~~~l~~-~~~~~~~k~~e~~~~~s~s~~ 470 (847)
T KOG0998|consen 398 LALSIASNPREKPRL----EQSSSEAPRTTPVKTSPVL--ELANELSNLASTSQQLPA-QKDTVQDKLNELDAQKSQSKE 470 (847)
T ss_pred ccccccccccccccc----ccccccccccCcccccccc--cchhhhhhcchhhhcccc-ccchhhhhhhhhhhhhhHHHh
Confidence 11 1124322 1222211112222222222 225666676665554433 333467899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 628 KIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 628 KiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
+...++.+|+++.+++++|.++|+++..++..+++++..|.++|++..+|+..|...|...|.+
T Consensus 471 ~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~---------------- 534 (847)
T KOG0998|consen 471 KFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQ---------------- 534 (847)
T ss_pred hhhhhhhhhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhh----------------
Confidence 9999999999999999999999999999999999999999999988888776655555544444
Q ss_pred HHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcccccccccCcccCcccccchhccchhcccccccchhhh
Q 000960 708 KMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDEDWDKLEDEGFTFVKE 787 (1208)
Q Consensus 708 kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq~GL~aK~~~~vElp~g~~~~~qe~a~~w~edw~~~~d~gf~~~~~ 787 (1208)
+++|.+.|.++|.++....|..+..++.|.|+..++|....|.++|++.+. ...++
T Consensus 535 ---------------------ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~---~s~~~ 590 (847)
T KOG0998|consen 535 ---------------------VENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQ---NSSTE 590 (847)
T ss_pred ---------------------hhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhhhhhccccccc---cchhh
Confidence 233333444444444444444444555555555555555555555555522 44445
Q ss_pred hhhcccccCC
Q 000960 788 LTLEVQNVVA 797 (1208)
Q Consensus 788 ~t~~~~~~~~ 797 (1208)
|...+++++.
T Consensus 591 l~~~~e~~~~ 600 (847)
T KOG0998|consen 591 LAGYLEGTIN 600 (847)
T ss_pred hhhhcccccc
Confidence 5555444443
No 2
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-39 Score=375.63 Aligned_cols=101 Identities=35% Similarity=0.642 Sum_probs=95.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 426 SHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 426 ~~~~Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
-...| .+....+.+|+++|+.+|+.+.|++|+.++|.+|+.++|++.+|++||.|+|+|+||+|+.+||++|||||+.+
T Consensus 183 q~~eW-AVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema 261 (1118)
T KOG1029|consen 183 QLEEW-AVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMA 261 (1118)
T ss_pred hhhhc-cccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHH
Confidence 34589 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCcccccCC
Q 000960 506 REGRPLPTMLPSTIMPDEALFSTT 529 (1208)
Q Consensus 506 l~G~~LP~~LPp~L~Pp~~~~~~~ 529 (1208)
+.|.+||.+||+.|+|| +++..
T Consensus 262 ~sGq~lP~tlP~E~Vpp--~~r~~ 283 (1118)
T KOG1029|consen 262 KSGQPLPKTLPPELVPP--SFRSS 283 (1118)
T ss_pred hcCCCCCCCCChhhcCc--ccccc
Confidence 99999999999999999 45443
No 3
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.82 E-value=1.4e-20 Score=180.68 Aligned_cols=97 Identities=32% Similarity=0.535 Sum_probs=82.2
Q ss_pred CCCcCcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhcCC
Q 000960 1 MAGQTATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKR 80 (1208)
Q Consensus 1 Ma~kt~Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~ 80 (1208)
|..=|++|+..|+.+|+.+|+ .+|+|+|++|+.||.+||||.++|++||+|+|.++||+|+++||++|||||.++++|.
T Consensus 1 ~~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~ 79 (104)
T PF12763_consen 1 MPKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGN 79 (104)
T ss_dssp ----SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCC
Confidence 333388999999999999996 6899999999999999999999999999999999999999999999999999988764
Q ss_pred --CCChhhhhhccCCCccCCC
Q 000960 81 --ELTPDIVKAALYGPASARI 99 (1208)
Q Consensus 81 --eLspe~Lp~aL~~Pa~~~i 99 (1208)
+| |+.||+.|++|+.+.+
T Consensus 80 ~~~l-P~~LP~~L~p~s~~~~ 99 (104)
T PF12763_consen 80 GKPL-PSSLPPSLIPPSKRPL 99 (104)
T ss_dssp TS----SSSSGGGSSSCG---
T ss_pred CCCC-chhcCHHHCCCCcccc
Confidence 66 9999999999987754
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.7e-17 Score=195.53 Aligned_cols=91 Identities=42% Similarity=0.688 Sum_probs=87.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhh
Q 000960 427 HVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 506 (1208)
Q Consensus 427 ~~~Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l 506 (1208)
..+| .|+.+|+.++.+.|..+ +...|||+++++|.||++++|+..+|.+||.|+|.|+||+||..||.+||+||..++
T Consensus 5 ~n~W-avT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 5 TNPW-AVTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred CCcc-ccchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 4579 79999999999999999 678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCC
Q 000960 507 EGRPLPTMLPSTI 519 (1208)
Q Consensus 507 ~G~~LP~~LPp~L 519 (1208)
.|++||.+|||+|
T Consensus 83 qG~~lP~~LPPsl 95 (1118)
T KOG1029|consen 83 QGIQLPPVLPPSL 95 (1118)
T ss_pred cCCcCCCCCChHH
Confidence 9999999999965
No 5
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.79 E-value=8.8e-20 Score=175.18 Aligned_cols=92 Identities=46% Similarity=0.889 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhhcC--
Q 000960 431 PKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG-- 508 (1208)
Q Consensus 431 p~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l~G-- 508 (1208)
|+|+++|+++|.++|..+|. .+|+|++++++.+|+.++|+.++|.+||+++|.|+||+|+++||++|||||.+.++|
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~ 80 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNG 80 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999985 689999999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCCCCCCCCCc
Q 000960 509 RPLPTMLPSTIMPDE 523 (1208)
Q Consensus 509 ~~LP~~LPp~L~Pp~ 523 (1208)
.+||..||+.|+|++
T Consensus 81 ~~lP~~LP~~L~p~s 95 (104)
T PF12763_consen 81 KPLPSSLPPSLIPPS 95 (104)
T ss_dssp S---SSSSGGGSSSC
T ss_pred CCCchhcCHHHCCCC
Confidence 699999999999994
No 6
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.5e-15 Score=171.54 Aligned_cols=99 Identities=40% Similarity=0.744 Sum_probs=95.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 000960 423 SSQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (1208)
Q Consensus 423 ~~~~~~~Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI 502 (1208)
++....+| +|++|+++.|.+.|+.+-.|-.|+|+|.-+++||.+++|+.+||.+||.|+|.|.||-|+++|||.|||||
T Consensus 216 sS~~d~pw-~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 216 SSELDTPW-QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccccCCcc-ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 44556789 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCC
Q 000960 503 ERYREGRPLPTMLPSTIMPD 522 (1208)
Q Consensus 503 ~r~l~G~~LP~~LPp~L~Pp 522 (1208)
..+++|++||+.||.+|.|-
T Consensus 295 VaRkNgypLPe~LP~~L~P~ 314 (737)
T KOG1955|consen 295 VARKNGYPLPESLPHCLHPN 314 (737)
T ss_pred eecccCCCCCCCCccccChh
Confidence 99999999999999999987
No 7
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.64 E-value=1.3e-15 Score=142.59 Aligned_cols=93 Identities=37% Similarity=0.752 Sum_probs=90.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhhcC
Q 000960 429 PWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (1208)
Q Consensus 429 ~Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l~G 508 (1208)
+| .|+.+++.+|+++|..+|+|++|+|+.+|++.+|...+++++++.+||.++|.+++|.|+|+||+.+|+++.+.+.|
T Consensus 1 ~~-~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g 79 (96)
T smart00027 1 DW-AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNG 79 (96)
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcC
Confidence 59 89999999999999999999999999999999998788999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 000960 509 RPLPTMLPSTIMPD 522 (1208)
Q Consensus 509 ~~LP~~LPp~L~Pp 522 (1208)
.+||..||+.|+|+
T Consensus 80 ~~~~~~~~~~~~~~ 93 (96)
T smart00027 80 YPIPASLPPSLIPP 93 (96)
T ss_pred CCCCccCCHhhcCC
Confidence 99999999999987
No 8
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.1e-12 Score=160.72 Aligned_cols=99 Identities=31% Similarity=0.625 Sum_probs=92.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 000960 425 QSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (1208)
Q Consensus 425 ~~~~~Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r 504 (1208)
.....| .+++.++.+|..+|..+... .|+++++.++.+|+.++|+-..|.+||.++|+|.+|.|++.||.++|||+..
T Consensus 116 ~~~~~p-~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~ 193 (847)
T KOG0998|consen 116 AAPFVP-AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLIND 193 (847)
T ss_pred CcccCC-CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHH
Confidence 456779 59999999999999999764 9999999999999999999999999999999999999999999999999999
Q ss_pred hhcC--CCCCCCCCCCCCCCccc
Q 000960 505 YREG--RPLPTMLPSTIMPDEAL 525 (1208)
Q Consensus 505 ~l~G--~~LP~~LPp~L~Pp~~~ 525 (1208)
.++| .+.|..||+.+||+.+.
T Consensus 194 ~l~~~~~p~P~~~p~~lIpps~~ 216 (847)
T KOG0998|consen 194 LLNGNSEPVPSRLPPSLIPPSKS 216 (847)
T ss_pred HhhcccCCCCccCCcccCCcchh
Confidence 9995 79999999999999643
No 9
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1e-13 Score=158.68 Aligned_cols=87 Identities=31% Similarity=0.521 Sum_probs=84.0
Q ss_pred CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhcCCCCCh
Q 000960 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTP 84 (1208)
Q Consensus 5 t~Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~eLsp 84 (1208)
|+|+++||..-|+.+.+|-.|.|+|..|++||.+|+||-.+|..||+|+|.|+||-|+..|||.|||||-...+|.+| |
T Consensus 226 T~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypL-P 304 (737)
T KOG1955|consen 226 TPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPL-P 304 (737)
T ss_pred CHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCC-C
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred hhhhhccC
Q 000960 85 DIVKAALY 92 (1208)
Q Consensus 85 e~Lp~aL~ 92 (1208)
+.|+..|.
T Consensus 305 e~LP~~L~ 312 (737)
T KOG1955|consen 305 ESLPHCLH 312 (737)
T ss_pred CCCccccC
Confidence 88988864
No 10
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.30 E-value=9.7e-12 Score=116.54 Aligned_cols=90 Identities=29% Similarity=0.523 Sum_probs=84.1
Q ss_pred CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhcCCCCCh
Q 000960 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTP 84 (1208)
Q Consensus 5 t~Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~eLsp 84 (1208)
|.++...|+++|..+|.|++|+|+..+++.+|...|++...+.+||.++|.+++|+|+++||+.+|+++...+.|++| |
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~-~ 83 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPI-P 83 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCC-C
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred hhhhhccCCCc
Q 000960 85 DIVKAALYGPA 95 (1208)
Q Consensus 85 e~Lp~aL~~Pa 95 (1208)
..||.+|.++.
T Consensus 84 ~~~~~~~~~~~ 94 (96)
T smart00027 84 ASLPPSLIPPS 94 (96)
T ss_pred ccCCHhhcCCC
Confidence 77787766554
No 11
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=7.9e-12 Score=140.88 Aligned_cols=90 Identities=28% Similarity=0.444 Sum_probs=85.4
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhcCCCCChhh
Q 000960 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTPDI 86 (1208)
Q Consensus 7 Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~eLspe~ 86 (1208)
.++..|+++|..+-+ -+|+|+|..|+..+.+|.||+.+|.+||.|+|.|+||+|+-+||+.|-|||.+...|++| |..
T Consensus 441 ~dk~~yde~fy~l~p-~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~kleghel-p~~ 518 (532)
T KOG1954|consen 441 KDKPTYDEIFYTLSP-VNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKLKLEGHEL-PSE 518 (532)
T ss_pred cCCcchHhhhhcccc-cCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHheecccccC-ccc
Confidence 567889999999987 689999999999999999999999999999999999999999999999999999999999 999
Q ss_pred hhhccCCCccCC
Q 000960 87 VKAALYGPASAR 98 (1208)
Q Consensus 87 Lp~aL~~Pa~~~ 98 (1208)
||..|+||+.+.
T Consensus 519 lp~hl~pps~r~ 530 (532)
T KOG1954|consen 519 LPKHLVPPSKRG 530 (532)
T ss_pred cCcccCCccccc
Confidence 999999998654
No 12
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.9e-10 Score=128.51 Aligned_cols=97 Identities=31% Similarity=0.622 Sum_probs=89.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 000960 424 SQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1208)
Q Consensus 424 ~~~~~~Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~ 503 (1208)
+.-+.+| .++ .++-.|+++|..+- .-+|+|++..++.-|.+++|+..+|.+||+++|+|+||+|+-+||+.|-|||+
T Consensus 431 g~d~~ew-vv~-~dk~~yde~fy~l~-p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~ 507 (532)
T KOG1954|consen 431 GADEAEW-VVS-KDKPTYDEIFYTLS-PVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIK 507 (532)
T ss_pred CCcccce-eee-cCCcchHhhhhccc-ccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHh
Confidence 3567899 454 56889999999995 57899999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCCCCc
Q 000960 504 RYREGRPLPTMLPSTIMPDE 523 (1208)
Q Consensus 504 r~l~G~~LP~~LPp~L~Pp~ 523 (1208)
.+++|..||..||+.|+||+
T Consensus 508 ~kleghelp~~lp~hl~pps 527 (532)
T KOG1954|consen 508 LKLEGHELPSELPKHLVPPS 527 (532)
T ss_pred eecccccCccccCcccCCcc
Confidence 99999999999999999993
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.99 E-value=1.4e-09 Score=93.53 Aligned_cols=67 Identities=40% Similarity=0.683 Sum_probs=63.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhhc
Q 000960 441 YTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 507 (1208)
Q Consensus 441 y~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l~ 507 (1208)
|+++|..+|+|++|+|+.+|++.+|...+++++++.+||..+|.+++|.|+|+||+.+|+++.++++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999877889999999999999999999999999999999998763
No 14
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.96 E-value=2.2e-09 Score=92.21 Aligned_cols=67 Identities=46% Similarity=0.767 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhc
Q 000960 12 FEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (1208)
Q Consensus 12 Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~ 78 (1208)
|+++|..+|+|++|+|+.+|++.+|...|++...+.+||..+|.+++|+|+++||+.+|++|.++|+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6889999999999999999999999999999999999999999999999999999999999999874
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.79 E-value=1.1e-08 Score=88.81 Aligned_cols=60 Identities=27% Similarity=0.462 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHcC--CC----CHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 440 KYTKVFVQVDIDRDGKITGEQAYNLFLSW--RL----PREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 440 ey~eaF~~fDkD~DG~ISgdELr~~flgs--~L----peeeL~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
+|+++|..+|+|++|+|+.+|++.++... .+ .++.+..||..+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 58899999999999999999999999543 33 34566677999999999999999999775
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.76 E-value=2.4e-08 Score=94.17 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhCC-CCCCcccHHHHHHHHH---cCCCCH-HHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhhcC
Q 000960 436 SEVQKYTKVFVQVDI-DRDGKITGEQAYNLFL---SWRLPR-EVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (1208)
Q Consensus 436 eEk~ey~eaF~~fDk-D~DG~ISgdELr~~fl---gs~Lpe-eeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l~G 508 (1208)
.-+..|+++|+.||+ +++|+|+.+||+.+|. +..++. +++..|+..+|.|+||+|+|+||+.+|.-+.....+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~ 82 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKG 82 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 346789999999999 9999999999999994 455887 999999999999999999999999887766655443
No 17
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.75 E-value=1.9e-07 Score=104.00 Aligned_cols=124 Identities=16% Similarity=0.249 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000960 614 KVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT- 691 (1208)
Q Consensus 614 Kl~elE~EI~ksReKiE-~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~- 691 (1208)
-+.+|+.++.+++++++ ||+.|++++.....+....+..+++++..+++.++.|+.+++....+...|+.+|..+|..
T Consensus 174 iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 174 IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 44688999999999999 9999999999999999999999999999999999999999999999999999999998755
Q ss_pred ---HHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-HHH-----HHHHH
Q 000960 692 ---FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE-ELV-----KILND 738 (1208)
Q Consensus 692 ---LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~-ELE-----KlL~E 738 (1208)
+++.+..+.+|+..|.+++.+++.+. ++|..++++|+. ++| |||++
T Consensus 254 ~~~~~~~~~~i~~le~el~~l~~~~~~~~-~ey~~Ll~~K~~Ld~EIatYR~LLEg 308 (312)
T PF00038_consen 254 DEEREEYQAEIAELEEELAELREEMARQL-REYQELLDVKLALDAEIATYRKLLEG 308 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 77889999999999999987776555 999999999998 665 77764
No 18
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.68 E-value=3.9e-08 Score=99.16 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 000960 436 SEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1208)
Q Consensus 436 eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~ 500 (1208)
....+++++|+.||+|++|+|+..||+.+| ++.+++.+++..||+.+|.|+||+|+|+||+.+|.
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 346789999999999999999999999999 68899999999999999999999999999997654
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.66 E-value=4.9e-08 Score=101.04 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 437 Ek~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
..++|+.+|+.||+|++|+|+..+|+.++ +|.++++++++.|++++|.|++|+|+|++|+.+|
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 36889999999999999999999999999 6899999999999999999999999999999643
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.62 E-value=1.3e-07 Score=95.47 Aligned_cols=71 Identities=24% Similarity=0.377 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 000960 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1208)
Q Consensus 433 LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~ 503 (1208)
++.++..+|+++|..||+|++|+|+..||+.+| ++..+++.+|..|+..+|.|++|.|+++||+.+|....
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 677889999999999999999999999999999 58889999999999999999999999999996554433
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.58 E-value=2.7e-07 Score=86.64 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 437 EVQKYTKVFVQVD-IDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 437 Ek~ey~eaF~~fD-kD~DG-~ISgdELr~~flg-------s~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
-+..++++|+.|| +|++| +|+.+||+.+|.. ...++++|..||+.+|.|++|+|+|+||+.+|.-+..+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~ 83 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTA 83 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3678999999998 89999 5999999999954 45788999999999999999999999999776655543
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.57 E-value=2.1e-07 Score=86.86 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhC-CCCCCc-ccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhhcC
Q 000960 438 VQKYTKVFVQVD-IDRDGK-ITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (1208)
Q Consensus 438 k~ey~eaF~~fD-kD~DG~-ISgdELr~~flg-------s~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l~G 508 (1208)
+..++++|+.|| +|++|+ |+..||+.+|.. ..++++++.+|+..+|.|++|.|+|+||+.+|.-+..+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 578999999997 999995 999999999942 24588999999999999999999999999888777655433
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.55 E-value=1.3e-07 Score=81.96 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCC------HHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 000960 11 LFEAYFRRADLDGDGQISGAEAVAFFQGSNLP------KQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (1208)
Q Consensus 11 ~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP------~~~L~qIW~LAD~d~DG~LdrdEF~vAM 70 (1208)
.++++|+.+|.|++|+|+..|++.++...+.. ...+..||..+|.++||+|+++||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 37899999999999999999999999998753 3566777999999999999999999886
No 24
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.54 E-value=3.8e-07 Score=86.08 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 437 EVQKYTKVFVQVD-IDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 437 Ek~ey~eaF~~fD-kD~DG-~ISgdELr~~flg-------s~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
-+..+.++|..|| +|++| +|+.+||+.+|.. ...+..+|.+|++.+|.|+||.|+|+||+.+|.-+..+
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999 88998 5999999999943 34578899999999999999999999999877665544
No 25
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.53 E-value=3.7e-07 Score=85.73 Aligned_cols=69 Identities=12% Similarity=0.201 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCC-CC-CCcccHHHHHHHHH-----cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 437 EVQKYTKVFVQVDI-DR-DGKITGEQAYNLFL-----SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 437 Ek~ey~eaF~~fDk-D~-DG~ISgdELr~~fl-----gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
-+..+.++|.++|. ++ +|+|+.+||+.+|. +.++++++|.+||+.+|.|++|+|+|+||+..|--+..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 35678999999997 67 89999999999993 778999999999999999999999999999766555443
No 26
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.52 E-value=4.1e-07 Score=83.78 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHH---cCCC----CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 000960 435 HSEVQKYTKVFVQVDI--DRDGKITGEQAYNLFL---SWRL----PREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1208)
Q Consensus 435 ~eEk~ey~eaF~~fDk--D~DG~ISgdELr~~fl---gs~L----peeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~ 503 (1208)
+++++.++++|..+|+ |++|+|+.+|++.+|. +..+ +.+++..||..+|.+++|.|+|+||+.+|.-+.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4678899999999999 8999999999999983 3333 589999999999999999999999997665444
No 27
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.51 E-value=5.1e-07 Score=84.72 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCC-CC-CCcccHHHHHHHHH-------cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 437 EVQKYTKVFVQVDI-DR-DGKITGEQAYNLFL-------SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 437 Ek~ey~eaF~~fDk-D~-DG~ISgdELr~~fl-------gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
-+..++++|..||. |+ +|+|+.+||+.+|. +..++++++..||+.+|.+++|.|+|+||+.+|.-+...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 36789999999997 97 69999999999984 457799999999999999999999999999776655433
No 28
>PTZ00183 centrin; Provisional
Probab=98.40 E-value=1.3e-06 Score=86.21 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 000960 431 PKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 501 (1208)
Q Consensus 431 p~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~fl--gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~L 501 (1208)
+.+++++++++..+|..+|.+++|+|+..|++.+|. +..++..++..||..+|.+++|.|+|+||+.+|+.
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 368899999999999999999999999999999994 56788999999999999999999999999977654
No 29
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.38 E-value=1.6e-06 Score=81.81 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHH-hCCCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 436 SEVQKYTKVFVQ-VDIDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 436 eEk~ey~eaF~~-fDkD~DG-~ISgdELr~~flg-------s~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
.-+..+..+|+. +|+|++| +|+.+||+.+|.. ......++.+||..+|.|+||.|+|+||+..|--+...
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 346789999999 7898986 9999999999943 35678999999999999999999999999776655543
No 30
>PTZ00184 calmodulin; Provisional
Probab=98.35 E-value=1.9e-06 Score=83.70 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 000960 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (1208)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI 502 (1208)
.++.+++++++++|..+|.+++|.|+..|++.++ ++..+..+++..||..+|.+++|.|+|+||+.+|+.+
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 4678899999999999999999999999999988 3566788899999999999999999999999776653
No 31
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.31 E-value=1.8e-06 Score=89.65 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 000960 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1208)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~ 503 (1208)
.++.+++++++++|..+|+|++|.|+..+|..+| ++.++++.++.+|+...|. +.+.|+|.+|+.+|-...
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 5899999999999999999999999999999998 6899999999999999999 999999999997665544
No 32
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.22 E-value=3.9e-06 Score=79.38 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhCC-CCCCcccHHHHHHHHHh-CC--CCH-HHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhcCC
Q 000960 9 SDLFEAYFRRADL-DGDGQISGAEAVAFFQG-SN--LPK-QVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKR 80 (1208)
Q Consensus 9 ~~~Y~~vF~~~D~-D~DGkIsg~Ea~~fL~~-Sg--LP~-~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G~ 80 (1208)
...++++|..+|. +++|+|+..|++.+|.. -| |.. .++.+|...+|.|+||.|+++||+..|.-++.+..+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~~ 83 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKGE 83 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4578999999999 99999999999999988 44 777 8999999999999999999999999999998887763
No 33
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.19 E-value=5.1e-06 Score=67.71 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHH
Q 000960 441 YTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTA 498 (1208)
Q Consensus 441 y~eaF~~fDkD~DG~ISgdELr~~fl--gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvA 498 (1208)
+..+|..+|.+++|.|+..|++.++. +...+.+.+..+|..+|.+++|.|+++||+..
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 57889999999999999999999994 66789999999999999999999999999854
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.18 E-value=5.6e-06 Score=81.86 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 434 THSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 434 S~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
.+..+.++.-+|..+|+|+||+|+.+||..++ ....+..+..++..+|.|+||.|+++||+.++
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 35668889999999999999999999999987 34557788999999999999999999999665
No 35
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.17 E-value=3.3e-06 Score=89.93 Aligned_cols=69 Identities=28% Similarity=0.382 Sum_probs=62.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHH--HHHHHHHhCCCCCCCcCHHHHH
Q 000960 426 SHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREV--LKQVWDLSDQDNDGMLSLKEFC 496 (1208)
Q Consensus 426 ~~~~Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~Lpeee--L~qIW~LaD~D~DGkLdfdEFv 496 (1208)
....| ++..+++.|..+|..+|.|.||||+..||+.+|.+.+.++.. |+.|+..+|.|.||+|+|.||+
T Consensus 88 teF~e--FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 88 TEFSE--FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred hhhhH--HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHH
Confidence 34556 999999999999999999999999999999999777777665 5799999999999999999998
No 36
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.16 E-value=8e-06 Score=76.34 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=63.2
Q ss_pred HHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-C------CCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhcC
Q 000960 10 DLFEAYFRRAD-LDGDG-QISGAEAVAFFQG-S------NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (1208)
Q Consensus 10 ~~Y~~vF~~~D-~D~DG-kIsg~Ea~~fL~~-S------gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G 79 (1208)
..++++|..+| .|++| +|+..|++.+|.. - ..+...+.+|+..+|.+++|.|+++||+..|..++.|+.+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 56899999997 99999 5999999999975 2 3478999999999999999999999999999999998865
No 37
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.12 E-value=1.2e-05 Score=75.70 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-----CC--CCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhcC
Q 000960 9 SDLFEAYFRRAD-LDGDG-QISGAEAVAFFQG-----SN--LPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (1208)
Q Consensus 9 ~~~Y~~vF~~~D-~D~DG-kIsg~Ea~~fL~~-----Sg--LP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G 79 (1208)
...++++|+.+| .|+|| +|+..|++.+|+. .| ..+..+.++++.+|.|+||.|+++||+..|.-++.+..+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~~~~ 86 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTACHE 86 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHhh
Confidence 457899999998 79999 6999999999998 54 678889999999999999999999999999888887654
No 38
>PRK09039 hypothetical protein; Validated
Probab=98.11 E-value=0.0001 Score=84.86 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=76.6
Q ss_pred HhHHHHHHHHHH---HHHHHHHH-HHHHHHH---HHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEI---LTSREKIQ-FCSTKMQ---ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (1208)
Q Consensus 611 a~KKl~elE~EI---~ksReKiE-~yrsKmQ---ELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLes 683 (1208)
++.++.+++.++ ..+|.+++ +|..+.+ +++.....++++|.+.+.+.++..++++.|+++|+.-.+|+++|+.
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544 33333344 4444433 6677788888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 684 KLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 684 sLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.|+.+|.+.+++|.|+.+|+..|.++.
T Consensus 159 ~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 159 ALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888743
No 39
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.11 E-value=5e-06 Score=69.97 Aligned_cols=49 Identities=33% Similarity=0.544 Sum_probs=44.7
Q ss_pred CCCcccHHHHHHHH--HcCC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 000960 452 RDGKITGEQAYNLF--LSWR-LPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1208)
Q Consensus 452 ~DG~ISgdELr~~f--lgs~-LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~ 500 (1208)
.+|+|+.++++.+| +|.. ++++++..|+..+|.|++|+|+|+||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999 3677 9999999999999999999999999997654
No 40
>PTZ00184 calmodulin; Provisional
Probab=98.10 E-value=1.1e-05 Score=78.35 Aligned_cols=72 Identities=25% Similarity=0.330 Sum_probs=65.3
Q ss_pred CCCc-CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC--CCHHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 000960 1 MAGQ-TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSN--LPKQVLAQVWSHADQRKAGFLNRAEFFNALKL 72 (1208)
Q Consensus 1 Ma~k-t~Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~Sg--LP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~L 72 (1208)
||.. +.++...++++|..+|.+++|.|+..|+..+|...+ +....+..||.++|.+++|.|+++||+.+|..
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 6777 778889999999999999999999999999998755 67789999999999999999999999988765
No 41
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=8.9e-06 Score=84.26 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 000960 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1208)
Q Consensus 437 Ek~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~ 500 (1208)
.+++++.+|+.+|-|++|+|+..+|+.++ +|.+|++++|.+|+.++|.|+||.|+-+||..+|.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 46789999999999999999999999999 79999999999999999999999999999996554
No 42
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.06 E-value=1.5e-05 Score=74.62 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhCCC--CCCcccHHHHHHHHH---cCCCC----HHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 437 EVQKYTKVFVQVDID--RDGKITGEQAYNLFL---SWRLP----REVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 437 Ek~ey~eaF~~fDkD--~DG~ISgdELr~~fl---gs~Lp----eeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
-+..+..+|..++.. .+|+|+.+||+.+|. +..++ ++++..||..+|.|++|.|+|+||+.+|.-+..+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 467889999999865 479999999999994 34466 8999999999999999999999999877655443
No 43
>PTZ00183 centrin; Provisional
Probab=98.05 E-value=1.3e-05 Score=79.03 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 439 QKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 439 ~ey~eaF~~fDkD~DG~ISgdELr~~fl--gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
..++.+|..+|++++|+|+.+|++.++. +..++.+++..|+..+|.+++|.|+|+||+.+|
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4578999999999999999999999995 667999999999999999999999999998654
No 44
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.04 E-value=1.9e-05 Score=74.22 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-------CCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhc
Q 000960 9 SDLFEAYFRRADL-DG-DGQISGAEAVAFFQG-------SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (1208)
Q Consensus 9 ~~~Y~~vF~~~D~-D~-DGkIsg~Ea~~fL~~-------SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~ 78 (1208)
...++++|..+|. |+ +|+|+..|++.+|.. .+++...+.+|++.+|.+++|.|+++||+..|.-+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~~ 85 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIACE 85 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4568899999997 97 699999999999875 2568899999999999999999999999998888777653
No 45
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.02 E-value=1.9e-05 Score=74.40 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=63.8
Q ss_pred CCCcCcccHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-----CCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 000960 1 MAGQTATNSDLFEAYFRRADL-DG-DGQISGAEAVAFFQG-----SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLV 73 (1208)
Q Consensus 1 Ma~kt~Ee~~~Y~~vF~~~D~-D~-DGkIsg~Ea~~fL~~-----SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LV 73 (1208)
|+....+-....-++|.++|. |+ +|+|+.+|++.+|.+ -.++.+++.+|++.+|.|++|.|+++||+..|.-+
T Consensus 1 ~~~~~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 1 MASPLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 444433445567889999998 67 899999999999963 35899999999999999999999999999888777
Q ss_pred HHHh
Q 000960 74 TVAQ 77 (1208)
Q Consensus 74 alAQ 77 (1208)
+.|.
T Consensus 81 ~~~~ 84 (88)
T cd05029 81 ALIY 84 (88)
T ss_pred HHHH
Confidence 6663
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.98 E-value=3.2e-05 Score=73.15 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh------C-CCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhc
Q 000960 9 SDLFEAYFRRAD-LDGDG-QISGAEAVAFFQG------S-NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (1208)
Q Consensus 9 ~~~Y~~vF~~~D-~D~DG-kIsg~Ea~~fL~~------S-gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~ 78 (1208)
...+.++|..+| .|+|| +|+..|++.+|.+ . ......+.+|...+|.|+||.|+++||+..|.-++.|..
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~~ 87 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVACN 87 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 346788999999 78998 5999999999966 2 347789999999999999999999999999988877754
No 47
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.97 E-value=3e-05 Score=71.54 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHhhCC--CCCCcccHHHHHHHHHh-CC--C----CHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 000960 7 TNSDLFEAYFRRADL--DGDGQISGAEAVAFFQG-SN--L----PKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTV 75 (1208)
Q Consensus 7 Ee~~~Y~~vF~~~D~--D~DGkIsg~Ea~~fL~~-Sg--L----P~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LVal 75 (1208)
++...++++|..+|. |++|+|+..+++.+|.. .| + ....+.+||..+|.+++|.|+++||+..|.-++.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 456789999999999 89999999999999975 33 3 3899999999999999999999999987776544
No 48
>PF14658 EF-hand_9: EF-hand domain
Probab=97.96 E-value=1.6e-05 Score=71.79 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=54.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHH--HcC-CCCHHHHHHHHHHhCCCCC-CCcCHHHHHHHHHH
Q 000960 443 KVFVQVDIDRDGKITGEQAYNLF--LSW-RLPREVLKQVWDLSDQDND-GMLSLKEFCTALYL 501 (1208)
Q Consensus 443 eaF~~fDkD~DG~ISgdELr~~f--lgs-~LpeeeL~qIW~LaD~D~D-GkLdfdEFvvAM~L 501 (1208)
.+|..||+++.|.|...+|+.+| ++. ..++.+|..+.++.|.++. |.|+|+.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999 455 7889999999999999998 99999999988764
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.96 E-value=0.00014 Score=90.49 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 000960 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 677 (1208)
Q Consensus 622 I~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQ 677 (1208)
|..+|++.|.++.|+++|...+++-.+.|..++.+|.+.++....|++++.++.|+
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444444444444444444444444444444443
No 50
>PRK11637 AmiB activator; Provisional
Probab=97.92 E-value=0.00069 Score=79.69 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~ 675 (1208)
+++.++++++.+..++++.+..++.+++......+.+|+.+..+|.+++.+|+.++.+|++..
T Consensus 61 ~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 61 KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444443
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.91 E-value=5.1e-05 Score=71.68 Aligned_cols=70 Identities=29% Similarity=0.384 Sum_probs=62.0
Q ss_pred HHHHHHHHHh-hCCCCCC-cccHHHHHHHHHhC-------CCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhc
Q 000960 9 SDLFEAYFRR-ADLDGDG-QISGAEAVAFFQGS-------NLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQS 78 (1208)
Q Consensus 9 ~~~Y~~vF~~-~D~D~DG-kIsg~Ea~~fL~~S-------gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~ 78 (1208)
......+|.. +|.|++| +|+..|++.+|.+- .....++.+||..+|.|+||.|+++||+..|.-++.+..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~~ 86 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVACH 86 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4567889999 8888887 99999999999885 577899999999999999999999999998888877754
No 52
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.90 E-value=3.3e-05 Score=82.20 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH---HcCCCC--HHH----HHHHHHHhCCCCCCCcCHHHHHHHHH
Q 000960 439 QKYTKVFVQVDIDRDGKITGEQAYNLF---LSWRLP--REV----LKQVWDLSDQDNDGMLSLKEFCTALY 500 (1208)
Q Consensus 439 ~ey~eaF~~fDkD~DG~ISgdELr~~f---lgs~Lp--eee----L~qIW~LaD~D~DGkLdfdEFvvAM~ 500 (1208)
++++=+|+.+|.+++|+|+.+|++.++ .+.+.+ ++. +..++.++|.|+||+|+|+||+.++.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 688889999999999999999999988 465666 554 45667899999999999999996544
No 53
>PRK11637 AmiB activator; Provisional
Probab=97.83 E-value=0.0013 Score=77.32 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHH
Q 000960 610 EADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (1208)
Q Consensus 610 Ea~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~Ey 671 (1208)
++++++.++++++.++.++|+..+.++.+++......+.++..+.++|.+++.+++.++..+
T Consensus 65 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 65 QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555554433333
No 54
>PRK09039 hypothetical protein; Validated
Probab=97.81 E-value=0.0011 Score=76.50 Aligned_cols=92 Identities=7% Similarity=0.005 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQ 696 (1208)
Q Consensus 617 elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ 696 (1208)
+++.+|.+++.+++-.+.+..+|+...........+...++..+.+++..++.+|.+.+.+|..|+++|+.++++|..|+
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333332222222234556667777777777777777777777777777777777766666
Q ss_pred HHHHHHHHHHHH
Q 000960 697 EKKMELYQAILK 708 (1208)
Q Consensus 697 ~Q~~eLeaAL~k 708 (1208)
..+..+++....
T Consensus 158 ~~L~~ae~~~~~ 169 (343)
T PRK09039 158 AALDASEKRDRE 169 (343)
T ss_pred HHHHHHHHHHHH
Confidence 666666655544
No 55
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=5e-05 Score=78.85 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
.++++++++++.+|..||.+++|+|.++||+..| +|..+..+++.+|+..+|.++.|+|+|++|. +.|..+
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~---~~mt~k 98 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFR---RVMTVK 98 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHH---HHHHHH
Confidence 6889999999999999999999999999998888 6899999999999999999999999999999 444444
No 56
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.75 E-value=7.4e-05 Score=74.05 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 000960 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (1208)
Q Consensus 7 Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM 70 (1208)
+.+....-.|..+|.|+||+|+..|+..++ ......-+.++++.+|.|+||+|+++||+..+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 445567778999999999999999999987 45567888999999999999999999999987
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.70 E-value=0.0012 Score=82.27 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 000960 609 TEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNE 652 (1208)
Q Consensus 609 tEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLne 652 (1208)
++++.|+.++.+..++-|+-+..+++|+.|.+..+..++.+|.+
T Consensus 470 e~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 470 EQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555544444444444444
No 58
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.68 E-value=0.0034 Score=71.85 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hh-hhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSR---CD-NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR---~~-neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA 686 (1208)
..++++.+...+-+++++.+.+..++.+|+.-+.. |+ ++|+.++++|+++..+++..++++++...++.+|...|+
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666655555555554444433 33 256666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000960 687 LEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 687 ~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
..+...++++.++++++.-+.+
T Consensus 243 ~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 243 DLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666555544
No 59
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.67 E-value=0.00015 Score=59.00 Aligned_cols=59 Identities=27% Similarity=0.433 Sum_probs=53.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 000960 12 FEAYFRRADLDGDGQISGAEAVAFFQGS--NLPKQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (1208)
Q Consensus 12 Y~~vF~~~D~D~DGkIsg~Ea~~fL~~S--gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM 70 (1208)
...+|..+|.+++|.|+..++..++... ..+...+..||..+|.+++|.|+.+||+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999886 5888999999999999999999999998654
No 60
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.65 E-value=0.0023 Score=81.93 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 627 EKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAI 706 (1208)
Q Consensus 627 eKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL 706 (1208)
++++.++.+++.+......+..++..+..++..+..+++.+..++++..+++.+|..++..++.++.+++.++.++++.+
T Consensus 817 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 896 (1179)
T TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444344444444433334444444444433333333333333333333
Q ss_pred H
Q 000960 707 L 707 (1208)
Q Consensus 707 ~ 707 (1208)
.
T Consensus 897 ~ 897 (1179)
T TIGR02168 897 E 897 (1179)
T ss_pred H
Confidence 3
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.65 E-value=0.0044 Score=70.95 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=22.4
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 657 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 657 lSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
|.++|.++..+..+++...+.+.+|+.++...+..+..+.+++.++.++|..
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444443
No 62
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.61 E-value=0.00019 Score=74.37 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhhc
Q 000960 430 WPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 507 (1208)
Q Consensus 430 Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l~ 507 (1208)
+..+++.++++|+++|..+|.|+||+|..++|+.+| +|...++++|..|+.++ .|-|+|--|+ -|+-.++.
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FL---TmfGekL~ 95 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFL---TMFGEKLN 95 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHH---HHHHHHhc
Confidence 345789999999999999999999999999999999 68889999999999876 5789999998 57778888
Q ss_pred CCC
Q 000960 508 GRP 510 (1208)
Q Consensus 508 G~~ 510 (1208)
|..
T Consensus 96 gtd 98 (171)
T KOG0031|consen 96 GTD 98 (171)
T ss_pred CCC
Confidence 863
No 63
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.59 E-value=0.00012 Score=61.70 Aligned_cols=49 Identities=18% Similarity=0.376 Sum_probs=44.8
Q ss_pred CCCcccHHHHHHHHHhC--C-CCHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 000960 23 GDGQISGAEAVAFFQGS--N-LPKQVLAQVWSHADQRKAGFLNRAEFFNALK 71 (1208)
Q Consensus 23 ~DGkIsg~Ea~~fL~~S--g-LP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~ 71 (1208)
.+|+|+.++++.+|... + ++.+++..|+..+|.+++|+|+++||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999654 4 8899999999999999999999999999885
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.57 E-value=0.0042 Score=63.80 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHH
Q 000960 675 YKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVK 734 (1208)
Q Consensus 675 ~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEK 734 (1208)
.+.|.-|+..|...+..|+.+.+++.++......++... +.|..+......++++|++
T Consensus 79 ~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv--~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKV--KALEQERDQWEEKYEELEE 136 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHhhHHHHHHHHHHHHH
Confidence 344444444444444455555555554444443322222 3334444444444444443
No 65
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.56 E-value=0.0039 Score=79.89 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 000960 66 FFNALKLV 73 (1208)
Q Consensus 66 F~vAM~LV 73 (1208)
++.||.+|
T Consensus 39 ll~ai~~~ 46 (1179)
T TIGR02168 39 IVDAIRWV 46 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 66
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.56 E-value=0.00023 Score=77.10 Aligned_cols=66 Identities=20% Similarity=0.402 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 000960 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1208)
Q Consensus 438 k~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~ 503 (1208)
++..+++|+.+|+|++|.|+..||+.+| +|..|+.+.+..|++..|...+|.|.|++|+.++-.+.
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 4667889999999999999999999999 68999999999999999988899999999988744333
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.55 E-value=0.0059 Score=67.59 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhh-Cccc
Q 000960 719 QQHADHIQNELE-ELVKILNDRCKQY-GLRA 747 (1208)
Q Consensus 719 QEr~~~in~kL~-ELEKlL~E~rkq~-GL~a 747 (1208)
......+-.+|+ +|-+.-+..|+.+ |+.+
T Consensus 162 ~~~~~~L~~~l~~ell~~yeri~~~~kg~gv 192 (239)
T COG1579 162 SSKREELKEKLDPELLSEYERIRKNKKGVGV 192 (239)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCceE
Confidence 344444445555 5556666667744 7665
No 68
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.52 E-value=0.00027 Score=85.13 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE-~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea 690 (1208)
..-+.+|+.++..+|+++| ||+.|++++.....+.-...+-.++|+...+..+..||.++.+-.+.-..|+++|.+++-
T Consensus 252 ~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 252 REIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEY 331 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHh
Confidence 4566788888999999999 999999999987777665555556666555555555655544444444444444444433
Q ss_pred HHHHHHH----HHHHHHHHHHHHhcccCcccHHHHHHHHHHHHH---HHH---HHHHHHH
Q 000960 691 TFRDIQE----KKMELYQAILKMEGESGDGTLQQHADHIQNELE---ELV---KILNDRC 740 (1208)
Q Consensus 691 ~LqDiQ~----Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~---ELE---KlL~E~r 740 (1208)
+|.+-+. .+.+.+++|.+|+++.. +.+.|++.++..|+. ||. |||++.-
T Consensus 332 ql~e~~r~~e~~L~~kd~~i~~mReec~-~l~~Elq~LlD~ki~Ld~EI~~YRkLLegee 390 (546)
T KOG0977|consen 332 QLDEDQRSFEQALNDKDAEIAKMREECQ-QLSVELQKLLDTKISLDAEIAAYRKLLEGEE 390 (546)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHhhchHhHHHhHHHHHHHHhcccc
Confidence 3222221 13444555555554432 344777777776655 332 7766543
No 69
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.46 E-value=0.004 Score=79.39 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHH
Q 000960 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (1208)
Q Consensus 622 I~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~Ey 671 (1208)
++..++.++-+++.+-+++.....+++++++++.++-.+++.|..++++.
T Consensus 339 i~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 339 IEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666555555555555444443
No 70
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.45 E-value=0.00026 Score=72.34 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCC--CCCCcCHHHHHHHHHHHHHhh
Q 000960 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQD--NDGMLSLKEFCTALYLMERYR 506 (1208)
Q Consensus 433 LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D--~DGkLdfdEFvvAM~LI~r~l 506 (1208)
.+++++.+++++|..||+.+||+|++.++..+| +|.+.++.+|.+.....+.+ +--+|+|++|+-++.-+...+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 567788999999999999999999999999999 79999999999998888777 457899999997665555543
No 71
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.43 E-value=0.00026 Score=82.52 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=61.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH------HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhh
Q 000960 439 QKYTKVFVQVDIDRDGKITGEQAYNLF------LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 506 (1208)
Q Consensus 439 ~ey~eaF~~fDkD~DG~ISgdELr~~f------lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l 506 (1208)
..+..+|+.+|+|+.|.|+.+|++... +.-.++.+++.++-+.+|.|+||+|++.||+.|.+|+.+.+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~~ 620 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRRR 620 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcchh
Confidence 347789999999999999999999877 24578899999999999999999999999999999999854
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.43 E-value=0.0049 Score=63.32 Aligned_cols=11 Identities=0% Similarity=0.335 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 000960 720 QHADHIQNELE 730 (1208)
Q Consensus 720 Er~~~in~kL~ 730 (1208)
++++.|..+|+
T Consensus 129 ~k~eel~~k~~ 139 (143)
T PF12718_consen 129 EKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 73
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.42 E-value=0.0064 Score=81.35 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=61.1
Q ss_pred hhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCc-------ccH
Q 000960 647 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-GESGD-------GTL 718 (1208)
Q Consensus 647 ~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~-~e~ed-------a~L 718 (1208)
..++.+..+++.+++.+++.++.++++..+++.+|+.+++..+..+..+|.++.+++.++.+++ .+..| ..|
T Consensus 361 ee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeL 440 (1486)
T PRK04863 361 EERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNA 440 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 3333344444444444444445555555555555555555555666666666666666666554 22222 567
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHhhCcccCcccccccccCcc
Q 000960 719 QQHADHIQNELEELV--------------KILNDRCKQYGLRAKPTLLVELPFGWQ 760 (1208)
Q Consensus 719 QEr~~~in~kL~ELE--------------KlL~E~rkq~GL~aK~~~~vElp~g~~ 760 (1208)
+.++..+..++++++ +.++..++++++.-+..--|+=+-+|+
T Consensus 441 e~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~ 496 (1486)
T PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWD 496 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 777666665555442 444444455555444444567677776
No 74
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.41 E-value=0.00042 Score=71.86 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 438 k~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
.+-+..+|..||.++.|+|..+.|+++| ++-+++.++|.+||+.+=+|..|.|+|.+|+.+|
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 4568899999999999999999999999 5889999999999999999999999999999443
No 75
>PRK03918 chromosome segregation protein; Provisional
Probab=97.38 E-value=0.009 Score=75.64 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELIL 641 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELql 641 (1208)
.+++.+++.++.++.++++.++.+++++..
T Consensus 192 ~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~ 221 (880)
T PRK03918 192 EELIKEKEKELEEVLREINEISSELPELRE 221 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.38 E-value=0.0086 Score=67.86 Aligned_cols=146 Identities=20% Similarity=0.291 Sum_probs=105.9
Q ss_pred chhhHHHhhhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHH
Q 000960 583 PELEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKR 662 (1208)
Q Consensus 583 P~ldd~ll~q~s~ee~~~l~~~~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKR 662 (1208)
|.-++.++..+..- +..|+. .+.+.+...++.++-.++..++.++..|+.+.++|..+.+.|.++|..+-+++-++|.
T Consensus 130 ~e~E~~lvq~I~~L-~k~le~-~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk 207 (294)
T COG1340 130 PEEERELVQKIKEL-RKELED-AKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK 207 (294)
T ss_pred hHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666555442 222222 1223345678888889999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHH
Q 000960 663 EVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (1208)
Q Consensus 663 EiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ 730 (1208)
+...+-.++.+..+++.++...+-.+...|+++...+..|..+..+..-......|++++..|=.++.
T Consensus 208 eade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 208 EADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888777777788877777777777777777777777777665533344566777777776666
No 77
>PLN02964 phosphatidylserine decarboxylase
Probab=97.37 E-value=0.00038 Score=85.75 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=60.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--Hc-CCCCHHH---HHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 426 SHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LS-WRLPREV---LKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 426 ~~~~Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lg-s~Lpeee---L~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
.+.+|-.++..|+++++++|+.+|+|++|+| ++.+| ++ ...++++ +.+|++++|.|++|.|+|+||+.+|
T Consensus 130 ~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL 205 (644)
T PLN02964 130 CELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLI 205 (644)
T ss_pred eeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 3566777899999999999999999999998 77777 45 4667776 8999999999999999999999766
Q ss_pred H
Q 000960 500 Y 500 (1208)
Q Consensus 500 ~ 500 (1208)
.
T Consensus 206 ~ 206 (644)
T PLN02964 206 K 206 (644)
T ss_pred H
Confidence 5
No 78
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.37 E-value=0.0062 Score=69.95 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHH---hhCcc
Q 000960 670 KYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK---QYGLR 746 (1208)
Q Consensus 670 EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rk---q~GL~ 746 (1208)
+|+....++.+++..++.+++++..++.++.+++.+|.....+.. ..+++++..++.++.+++..+..... ++-++
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~ 275 (423)
T TIGR01843 197 ELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFR-EEVLEELTEAQARLAELRERLNKARDRLQRLIIR 275 (423)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEE
Confidence 333344444555555555555555555555555555554332211 23355666667777766655554443 34455
Q ss_pred cCcc
Q 000960 747 AKPT 750 (1208)
Q Consensus 747 aK~~ 750 (1208)
|--.
T Consensus 276 AP~d 279 (423)
T TIGR01843 276 SPVD 279 (423)
T ss_pred CCCC
Confidence 5433
No 79
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.36 E-value=0.00036 Score=71.33 Aligned_cols=59 Identities=17% Similarity=0.380 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHH
Q 000960 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCT 497 (1208)
Q Consensus 438 k~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvv 497 (1208)
.+.|.+-.+.||++++|+|.+.|||++| +|.+|+++++.+++.-. .|.+|.|+|+.|+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk 147 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVK 147 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHH
Confidence 4678889999999999999999999999 79999999999998755 47889999999995
No 80
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.36 E-value=0.0004 Score=74.52 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=62.0
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHH--HHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 000960 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQV--LAQVWSHADQRKAGFLNRAEFFNALKLVT 74 (1208)
Q Consensus 7 Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~--L~qIW~LAD~d~DG~LdrdEF~vAM~LVa 74 (1208)
.+...|..+|.++|.|.||+|+..|++.+|.+-|.|+.- |++++..+|-|.||+|++.||++..++++
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999865 57899999999999999999999888764
No 81
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.30 E-value=0.0081 Score=68.80 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=6.5
Q ss_pred CCcCHHHHHH
Q 000960 488 GMLSLKEFCT 497 (1208)
Q Consensus 488 GkLdfdEFvv 497 (1208)
..|+..+|+.
T Consensus 12 ~~isL~~FL~ 21 (325)
T PF08317_consen 12 EPISLQDFLN 21 (325)
T ss_pred CCcCHHHHHH
Confidence 4577777764
No 82
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=97.26 E-value=0.019 Score=63.37 Aligned_cols=28 Identities=11% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhCcc
Q 000960 719 QQHADHIQNELE-ELVKILNDRCKQYGLR 746 (1208)
Q Consensus 719 QEr~~~in~kL~-ELEKlL~E~rkq~GL~ 746 (1208)
++++..+..++. .-.++..+.+.=|.+.
T Consensus 132 ~~~l~~l~~~l~~~r~~l~~~l~~ifpI~ 160 (302)
T PF10186_consen 132 KQRLSQLQSQLARRRRQLIQELSEIFPIE 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCce
Confidence 444444455555 2246677777777773
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.23 E-value=0.017 Score=69.49 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=24.4
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (1208)
Q Consensus 650 Lnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl 709 (1208)
++++..++..++.+++.|+.++.+..+++.++++.|..++..+.+++.++..++..+..+
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333444444444433333333333334444444444444444444444433
No 84
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.22 E-value=0.0022 Score=61.58 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHH-------cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLFL-------SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 437 Ek~ey~eaF~~fDkD~DG~ISgdELr~~fl-------gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
-+.-+..+|..+-. +.+.++..|++.+|. +..-..+.|++|+...|.|+||+|+|.||+..+--|..+
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 35678899999974 467999999999992 445578899999999999999999999999766555444
No 85
>PRK02224 chromosome segregation protein; Provisional
Probab=97.22 E-value=0.016 Score=73.59 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHH
Q 000960 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLA 668 (1208)
Q Consensus 615 l~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr 668 (1208)
+.+++.++.+++++++.|.....++.........++.++..++.++..++.+|+
T Consensus 539 ~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le 592 (880)
T PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333333333333344444444444444444444
No 86
>PRK03918 chromosome segregation protein; Provisional
Probab=97.21 E-value=0.016 Score=73.54 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=9.9
Q ss_pred chhccchhcccccccc
Q 000960 768 ADWDEDWDKLEDEGFT 783 (1208)
Q Consensus 768 ~~w~edw~~~~d~gf~ 783 (1208)
..+++-|++|.+.+|.
T Consensus 747 ~~~~~if~~l~~~~~~ 762 (880)
T PRK03918 747 EIASEIFEELTEGKYS 762 (880)
T ss_pred HHHHHHHHHHcCCCee
Confidence 3446667777665555
No 87
>PLN02964 phosphatidylserine decarboxylase
Probab=97.20 E-value=0.001 Score=82.18 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 433 LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
.+.++...++++|..+|.|++|.|+.+|+..+| ++...++++|.++|+.+|.|++|.|+++||..+|
T Consensus 173 pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL 241 (644)
T PLN02964 173 PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALL 241 (644)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 445556678999999999999999999999999 4566889999999999999999999999999544
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.19 E-value=0.014 Score=64.77 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=51.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 608 ATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTL 687 (1208)
Q Consensus 608 atEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~ 687 (1208)
.+.+.+.+.+++.++.++++++-.++..++++..++.+.+..|...+ .-+++..|..+++....++.+|+..|+.
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~-----~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK-----DERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555555555544444444443321 3345555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 000960 688 EEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 688 ~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
+...+..++.++..|..+|.+++
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555555555543
No 89
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.16 E-value=0.0017 Score=60.96 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=57.0
Q ss_pred HHHHHHHHhhCCC--CCCcccHHHHHHHHHhC---CCC----HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHh
Q 000960 10 DLFEAYFRRADLD--GDGQISGAEAVAFFQGS---NLP----KQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQ 77 (1208)
Q Consensus 10 ~~Y~~vF~~~D~D--~DGkIsg~Ea~~fL~~S---gLP----~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ 77 (1208)
.....+|..++.. .+|+|+.+|++.+|.+. .++ ...+.+||..+|.+++|.|+++||+..|..++.+-
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~~ 84 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVAA 84 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 4566788888765 47899999999999743 244 89999999999999999999999999998776653
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.16 E-value=0.028 Score=68.40 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=9.4
Q ss_pred ccHHHHHHHHHHHHH
Q 000960 716 GTLQQHADHIQNELE 730 (1208)
Q Consensus 716 a~LQEr~~~in~kL~ 730 (1208)
..|++.++.++..|.
T Consensus 286 e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQ 300 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777776665554
No 91
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.15 E-value=0.0012 Score=70.53 Aligned_cols=64 Identities=27% Similarity=0.375 Sum_probs=53.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHh---CCCC--H----HHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 000960 10 DLFEAYFRRADLDGDGQISGAEAVAFFQG---SNLP--K----QVLAQVWSHADQRKAGFLNRAEFFNALKLV 73 (1208)
Q Consensus 10 ~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~---SgLP--~----~~L~qIW~LAD~d~DG~LdrdEF~vAM~LV 73 (1208)
.+.+=.|+.+|.+++|+|+.+|+..++.. .+.. . .++.++...+|.|+||+|+++||+.++.-.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 46677899999999999999999888776 3555 3 455667889999999999999999998754
No 92
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=97.13 E-value=0.0043 Score=66.72 Aligned_cols=92 Identities=17% Similarity=0.294 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 000960 599 ESLNAKLKEATEADKKVEELEKEILTS----REKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1208)
Q Consensus 599 ~~l~~~~qEatEa~KKl~elE~EI~ks----ReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee 674 (1208)
-+|+.++ .+.+.++..++++..+. ..+....+.++++|..||.+.-. ++.+-...-...+..++..|+..
T Consensus 99 vrLkrEL---a~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~---~~~~~~~~~~~~l~~v~~Dl~~i 172 (195)
T PF12761_consen 99 VRLKREL---AELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLR---ELEEGRSKSGKNLKSVREDLDTI 172 (195)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHH---hhhccCCCCCCCHHHHHHHHHHH
Confidence 3555544 33446666666666542 23445667788888888875533 33222334455667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000960 675 YKQSGDVASKLTLEEATFRDIQ 696 (1208)
Q Consensus 675 ~KQvseLessLA~~Ea~LqDiQ 696 (1208)
..||.-||+-|+.-+..|++|+
T Consensus 173 e~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 173 EEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888877777777665
No 93
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.12 E-value=0.02 Score=71.71 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=17.2
Q ss_pred CCCCCCCCC--CCCCCCccCCCC
Q 000960 142 NASTNQQSP--PSQSNHFVRTPQ 162 (1208)
Q Consensus 142 ~~~~~qq~~--p~~~~~~~r~~~ 162 (1208)
|...++||| +..-+.|||+-|
T Consensus 50 GsVqg~qYF~Cd~ncG~FVr~sq 72 (1243)
T KOG0971|consen 50 GSVQGVQYFECDENCGVFVRSSQ 72 (1243)
T ss_pred CcccceeeEecCCCcceEeehhh
Confidence 456778899 888888999888
No 94
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.11 E-value=0.022 Score=75.08 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 618 LEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQE 697 (1208)
Q Consensus 618 lE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~ 697 (1208)
++.++...+..++.+..++++++........+++++..++..++.+++.|..++++..+++.+|+..|...+..+.++.+
T Consensus 812 ~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~ 891 (1163)
T COG1196 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444444444444444455555555555555555555555555
Q ss_pred HHHHHHHHHHHHhccc
Q 000960 698 KKMELYQAILKMEGES 713 (1208)
Q Consensus 698 Q~~eLeaAL~kl~~e~ 713 (1208)
++.+++..+.+++.+.
T Consensus 892 ~l~~~~~~~~~~~~~~ 907 (1163)
T COG1196 892 ELRELESELAELKEEI 907 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544333
No 95
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.10 E-value=0.036 Score=69.67 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1208)
Q Consensus 636 mQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessL 685 (1208)
++|+..+..-.+++.+.+++.+++++.+=..|..+|++..||+..-+..+
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~ 461 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSI 461 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444455555566666666666666666666666666665544443
No 96
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.09 E-value=0.036 Score=60.96 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--------------HHHhhhcHHHHHHHHHHHHH
Q 000960 608 ATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI--------------TERVSGDKREVELLAKKYEE 673 (1208)
Q Consensus 608 atEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel--------------~eelSelKREiQ~Lr~EyEe 673 (1208)
+.+.++.+..++......-.+++.+..++.++......++..+.++ .+++..+...+..|+.++..
T Consensus 73 ~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 73 ADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444 44444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 674 KYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 674 e~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
....+..|+.+......+...+..++..|.+.|..++
T Consensus 153 ~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 153 VGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433332222233344444444444444433
No 97
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.08 E-value=0.032 Score=71.63 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=51.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHH-------HHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE-------LLAKKYEEKYKQSGDVAS 683 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ-------~Lr~EyEee~KQvseLes 683 (1208)
.++++.+.+.++.+-++++..|+.++.+.+....++.+.|.++..++.+++.|.+ .+++.++.....+.+|+.
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~ 358 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKE 358 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555566666655555555555555555444444444333 344444444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 684 KLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 684 sLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.+.+++..++.++..+..|+..|..++
T Consensus 359 ~~~~~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 359 EIREIENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554433
No 98
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.07 E-value=0.00077 Score=72.36 Aligned_cols=60 Identities=30% Similarity=0.480 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH------cC-------CCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 440 KYTKVFVQVDIDRDGKITGEQAYNLFL------SW-------RLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 440 ey~eaF~~fDkD~DG~ISgdELr~~fl------gs-------~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
+++=+|..+|.|++|+|+.+|+..++. +. ..+++-+..||..+|.|+||.|+++||+-++
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 344559999999999999999888772 21 2257778999999999999999999998654
No 99
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.06 E-value=0.025 Score=65.12 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000960 688 EEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 688 ~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
++.++..++.++.+++..|.+
T Consensus 208 ~~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 208 AQGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 100
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.06 E-value=0.023 Score=74.93 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 000960 718 LQQHADHIQNELE 730 (1208)
Q Consensus 718 LQEr~~~in~kL~ 730 (1208)
|.+.++.+..++.
T Consensus 889 l~~~l~~~~~~~~ 901 (1163)
T COG1196 889 LEEELRELESELA 901 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 101
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.05 E-value=0.052 Score=63.21 Aligned_cols=97 Identities=10% Similarity=0.095 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHH---HHHHHH-------HHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK---KYEEKY-------KQSGDV 681 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~---EyEee~-------KQvseL 681 (1208)
++.+..++++.++++.++..+-.++++|+.+++...++-+++..-++++|-++..|.. +||++. .++.++
T Consensus 136 qQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r 215 (499)
T COG4372 136 QQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQAR 215 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555666666666666666555555444455555444332 333333 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 682 ASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 682 essLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
++.|+..++.+|+.+.+++++-+.+..
T Consensus 216 ~~ela~r~aa~Qq~~q~i~qrd~~i~q 242 (499)
T COG4372 216 TEELARRAAAAQQTAQAIQQRDAQISQ 242 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666555553
No 102
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.02 E-value=0.022 Score=76.43 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRC------DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~------~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLess 684 (1208)
++.++.+++.++.++..+++.++.++++...+..-. ..++.....++.+++.+++.+..++++...++.+++.+
T Consensus 305 tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeE 384 (1486)
T PRK04863 305 EQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEAR 384 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444444444444433333222 22222333333333333333333333333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000960 685 LTLEEATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 685 LA~~Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
+..+|.+++.++.++.++..++.
T Consensus 385 leelEeeLeeLqeqLaelqqel~ 407 (1486)
T PRK04863 385 AEAAEEEVDELKSQLADYQQALD 407 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 103
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.02 E-value=0.056 Score=59.44 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 619 EKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 698 (1208)
Q Consensus 619 E~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q 698 (1208)
+..+....+.++-..+.++.|.......+.+|..+..++...++..+....+|++....+.-++..|..+|.++..+..+
T Consensus 63 ~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k 142 (237)
T PF00261_consen 63 TEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK 142 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 34445555555555555666666666667777777777777777777777777777777766666666555554444444
Q ss_pred HHHHHHHHH
Q 000960 699 KMELYQAIL 707 (1208)
Q Consensus 699 ~~eLeaAL~ 707 (1208)
+.+|+..|.
T Consensus 143 i~eLE~el~ 151 (237)
T PF00261_consen 143 IKELEEELK 151 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 104
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.01 E-value=0.027 Score=59.23 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKS 644 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqks 644 (1208)
.++.++++++++.++++++..+...+.++.....
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~ 119 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQ 119 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455554444444444444444333333
No 105
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.01 E-value=0.021 Score=65.22 Aligned_cols=119 Identities=14% Similarity=0.217 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 619 EKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 698 (1208)
Q Consensus 619 E~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q 698 (1208)
..|+.+++.+...|..|-|.| +..|-.+|.+...+|+.|..++.+-..++..+..+|..|.++|++++.+++.+-..
T Consensus 180 R~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~E 256 (306)
T PF04849_consen 180 RSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAE 256 (306)
T ss_pred HHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555666666665 44588889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 699 KMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (1208)
Q Consensus 699 ~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq 742 (1208)
..+|...|...++-. ..|+..+..++-+++|...+|.|+...
T Consensus 257 nEeL~q~L~~ske~Q--~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 257 NEELQQHLQASKESQ--RQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999865333 457888888888888888888887763
No 106
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.036 Score=69.08 Aligned_cols=131 Identities=20% Similarity=0.234 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~L 692 (1208)
+++..++.+++.+...++.+..+...|+.+...|......+..++..+..-++.++....+..+-+..|+.++...++.|
T Consensus 503 ~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~l 582 (698)
T KOG0978|consen 503 EEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKL 582 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666667777777777766777776666666666777777777777777777788889999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHH----------HHHHHHHHhhCc
Q 000960 693 RDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV----------KILNDRCKQYGL 745 (1208)
Q Consensus 693 qDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELE----------KlL~E~rkq~GL 745 (1208)
.|||.++.++...|..+.-.. .-|+|.+..++.+|..+. .+-+|...++++
T Consensus 583 e~i~~~~~e~~~ele~~~~k~--~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~ 643 (698)
T KOG0978|consen 583 EQIQEQYAELELELEIEKFKR--KRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKEL 643 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhc
Confidence 999999999999999866444 567888888888888662 556666667764
No 107
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.98 E-value=0.061 Score=55.56 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=39.7
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHH
Q 000960 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNEL 729 (1208)
Q Consensus 650 Lnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL 729 (1208)
|..++.++..+..++..|+.+-++..+++...+.+|..+|....++.+.+..+++...++... ++-.+..++.++
T Consensus 61 l~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~-----~~~~ve~L~~ql 135 (140)
T PF10473_consen 61 LEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEE-----SKSAVEMLQKQL 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 333333333444444444444444445555555555556666666666666666664443322 244555555555
Q ss_pred HHH
Q 000960 730 EEL 732 (1208)
Q Consensus 730 ~EL 732 (1208)
.+|
T Consensus 136 ~~L 138 (140)
T PF10473_consen 136 KEL 138 (140)
T ss_pred hhh
Confidence 544
No 108
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.95 E-value=0.043 Score=69.03 Aligned_cols=98 Identities=15% Similarity=0.288 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHH-------HHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRL---NEIT-------ERVSGDKREVELLAKKYEEKYKQSGDVA 682 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neL---nel~-------eelSelKREiQ~Lr~EyEee~KQvseLe 682 (1208)
..+++.+.+.++++++.+.++..+.+|...++.|+... ++.. +|..++|..+..|+++....+.+..+++
T Consensus 372 ~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~ 451 (980)
T KOG0980|consen 372 GELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQ 451 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455567777777777777777777776666544 2322 3333444444445555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 683 SKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 683 ssLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.++.+++...-++.+++.+|...|.+++
T Consensus 452 kQle~~~~s~~~~~~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 452 KQLESAEQSIDDVEEENTNLNDQLEELQ 479 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666544
No 109
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.94 E-value=0.03 Score=68.19 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELIL-------YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELql-------qksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLes 683 (1208)
+.+++..++.+|.+++.+++.|+.++.+.+. .+......|+++..+++.+|+.+..|+-++..-+++...|..
T Consensus 104 ~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 104 TARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3355555555565666555555555544321 111122334444444444444444444444444444444444
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 000960 684 KLTLEEA-------TFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 684 sLA~~Ea-------~LqDiQ~Q~~eLeaAL~k 708 (1208)
.|+.+.. -..|+|++.+.|.+.|.-
T Consensus 184 ~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 184 ELARARKQLDDETLLRVDLQNRVQTLLEELAF 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4433321 144555555555555553
No 110
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.94 E-value=0.0018 Score=76.04 Aligned_cols=56 Identities=29% Similarity=0.372 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 000960 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 504 (1208)
Q Consensus 438 k~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r 504 (1208)
+..++.+|+.+|+|+||+|+.+|+.. +..+|+.+|.|+||.|+++||..+|..+.+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 45688999999999999999999842 678999999999999999999988877765
No 111
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.94 E-value=0.0048 Score=70.59 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 694 (1208)
Q Consensus 616 ~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqD 694 (1208)
.+++.++...+++.+.|..-++++.. ......++.++.+++..++.|.++|.+++++-.++..+|.+.|..+|.++.+
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~-~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLEE-ESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp -------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555441 1111222344444444444444444444444444444444444444333333
No 112
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.93 E-value=0.037 Score=68.68 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHH-------------------------------
Q 000960 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK------------------------------- 670 (1208)
Q Consensus 622 I~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~E------------------------------- 670 (1208)
.+.++.-.+-+..+|-++.++.+..+++|.+.++.+..+++|++.|++-
T Consensus 258 d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc 337 (1265)
T KOG0976|consen 258 DMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRC 337 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433445556777777888888888888888888888877765442
Q ss_pred -HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHH
Q 000960 671 -YEEKY-------KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNE 728 (1208)
Q Consensus 671 -yEee~-------KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~k 728 (1208)
+-+.. +.+++|+++-+++++..+-||+++..++..|+.|...+ +.+||.|+++-.+
T Consensus 338 ~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~--aerqeQidelKn~ 401 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQ--AERQEQIDELKNH 401 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 11111 23344444455555566667777766666666544333 3444555444433
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.93 E-value=0.062 Score=63.74 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=45.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 000960 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1208)
Q Consensus 606 qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee 674 (1208)
+|.++.++++.+..++.+++..+|..+++.+..+..+..+..++|+++..+|+.+...++.|+.+..++
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~q 113 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQ 113 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666777777777777777777777777776665333
No 114
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.93 E-value=0.027 Score=67.88 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 000960 689 EATFRDIQEKKMELYQAILKMEGE 712 (1208)
Q Consensus 689 Ea~LqDiQ~Q~~eLeaAL~kl~~e 712 (1208)
...+..+..++..|+..+.+++..
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444455555555555533
No 115
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.92 E-value=0.0021 Score=76.65 Aligned_cols=71 Identities=24% Similarity=0.407 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCC-----CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 000960 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRL-----PREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1208)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~L-----peeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~ 503 (1208)
.++++|+..+++.|..+| |++|+|+..|+..+|...++ .++++++|+...+.|.+|+|+|+||+.++.-+.
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 588999999999999999 99999999999999965433 489999999999999999999999997554443
No 116
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.91 E-value=0.016 Score=68.45 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEIT 654 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~ 654 (1208)
+++.+++.+..+++....-..+++++++.+..+|.++|++.+
T Consensus 361 ~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 361 TEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334333333334444455555555555554444443
No 117
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.90 E-value=0.041 Score=60.83 Aligned_cols=91 Identities=7% Similarity=0.065 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Q 000960 634 TKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-GE 712 (1208)
Q Consensus 634 sKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~-~e 712 (1208)
.+..++..++....++++.+..|+..++...+.|+..++++.+++.+|+.+|..++...+.|.--+.++.+.|...- .+
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d 121 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELD 121 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444445555555566666777777777777788888888888888888888888888888887777777777633 23
Q ss_pred cCcccHHHHHHHH
Q 000960 713 SGDGTLQQHADHI 725 (1208)
Q Consensus 713 ~eda~LQEr~~~i 725 (1208)
.. -.++||..+|
T Consensus 122 ~P-f~~~eR~~Rl 133 (251)
T PF11932_consen 122 LP-FLLEERQERL 133 (251)
T ss_pred CC-CChHHHHHHH
Confidence 22 2335555555
No 118
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.90 E-value=0.06 Score=62.77 Aligned_cols=9 Identities=22% Similarity=0.113 Sum_probs=4.3
Q ss_pred CCchhhHHH
Q 000960 581 KVPELEKHL 589 (1208)
Q Consensus 581 ~~P~ldd~l 589 (1208)
.+=.|||.+
T Consensus 72 gVfqlddi~ 80 (499)
T COG4372 72 GVFQLDDIR 80 (499)
T ss_pred hhhhHHHHH
Confidence 344555543
No 119
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.89 E-value=0.0023 Score=68.82 Aligned_cols=70 Identities=23% Similarity=0.231 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhhcC
Q 000960 439 QKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 508 (1208)
Q Consensus 439 ~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l~G 508 (1208)
...+.+|+.||+|+||.|+-.|+...| .-.+-.++-|.=.+.++|.|+||+|+++|++.++.-|+.....
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~ 135 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGS 135 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccc
Confidence 445678999999999999999977766 3456677788888999999999999999999877777766555
No 120
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.88 E-value=0.034 Score=58.49 Aligned_cols=95 Identities=18% Similarity=0.320 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~L 692 (1208)
+++.++++.+.++..+++.++...+++.....+...++..+++.+.++.+++..|++++.+....+..+...+......+
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENL 174 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444445555555555555555555555555555555555544444445
Q ss_pred HHHHHHHHHHHHHHH
Q 000960 693 RDIQEKKMELYQAIL 707 (1208)
Q Consensus 693 qDiQ~Q~~eLeaAL~ 707 (1208)
+++++++.+++..+.
T Consensus 175 ~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 175 QQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555554444443
No 121
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.87 E-value=0.036 Score=63.00 Aligned_cols=80 Identities=26% Similarity=0.236 Sum_probs=65.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1208)
Q Consensus 606 qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessL 685 (1208)
....+...++.++.+++...+++.+-+..+.+++......+-.+.+++.+++.++|.+...+.+++++.++.+..|-.++
T Consensus 20 ~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~ 99 (294)
T COG1340 20 EEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKR 99 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566778888999999999999999999999999888888888888888888888888887777777777766665553
No 122
>PF14658 EF-hand_9: EF-hand domain
Probab=96.87 E-value=0.0021 Score=58.46 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=54.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhC---CCCHHHHHHHHHhccCCCC-CCCCHHHHHHHHHH
Q 000960 14 AYFRRADLDGDGQISGAEAVAFFQGS---NLPKQVLAQVWSHADQRKA-GFLNRAEFFNALKL 72 (1208)
Q Consensus 14 ~vF~~~D~D~DGkIsg~Ea~~fL~~S---gLP~~~L~qIW~LAD~d~D-G~LdrdEF~vAM~L 72 (1208)
..|+.+|+++.|+|....++.+|+.. +..+..|..+.+++|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 46999999999999999999999885 4588999999999999888 99999999999985
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.051 Score=61.11 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE 665 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ 665 (1208)
+++.+.+.+++|..+.++|+....+.++++....+.+.+++.+..+|.+++..|.
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445554444444444444444444444444444444444444443333
No 124
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.85 E-value=0.00094 Score=51.30 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 000960 474 VLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1208)
Q Consensus 474 eL~qIW~LaD~D~DGkLdfdEFvvAM~ 500 (1208)
+|.+|++.+|.|+||+|+++||+.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 355666666666666666666665543
No 125
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.026 Score=72.55 Aligned_cols=90 Identities=26% Similarity=0.356 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH----HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLN----EITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLn----el~eelSelKREiQ~Lr~EyEee~KQvseLessLA 686 (1208)
+.+++.++++...+.+.+|+..++...+|...+.+|..+|. .++.+-..++.++..+++++....+++.++..++.
T Consensus 424 ~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 424 ARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELD 503 (1293)
T ss_pred HHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555566666666666655555555555444443 34445556667777777777777788888877777
Q ss_pred HHHHHHHHHHHHHH
Q 000960 687 LEEATFRDIQEKKM 700 (1208)
Q Consensus 687 ~~Ea~LqDiQ~Q~~ 700 (1208)
.+|.+|.++..++.
T Consensus 504 vaesel~~L~~~~~ 517 (1293)
T KOG0996|consen 504 VAESELDILLSRHE 517 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555544433
No 126
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.84 E-value=0.056 Score=71.69 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=8.9
Q ss_pred hhhhHHHHHHhhhcHHHHHHHHH
Q 000960 647 DNRLNEITERVSGDKREVELLAK 669 (1208)
Q Consensus 647 ~neLnel~eelSelKREiQ~Lr~ 669 (1208)
+.+|+.+..++.+++.+++.+..
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~~~ 706 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEELLE 706 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444434333333
No 127
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.81 E-value=0.047 Score=59.08 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 695 (1208)
Q Consensus 616 ~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDi 695 (1208)
..+..+|.+++++.+...+.|.++.....+.-.-|....+++.+|++++.. |+..+..+..+..++...+..|+++
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~----y~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN----YEKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544555555555544444433333333333333333321 1112222233333344444444444
Q ss_pred HHHHHHHHHHHHHHh
Q 000960 696 QEKKMELYQAILKME 710 (1208)
Q Consensus 696 Q~Q~~eLeaAL~kl~ 710 (1208)
+-.+..|+..+.+++
T Consensus 106 k~e~evL~qr~~kle 120 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 128
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.79 E-value=0.033 Score=67.82 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=35.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1208)
Q Consensus 606 qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessL 685 (1208)
+|..+..+....++.++.+++++++.++..+...............++......++.|++.|..++++..+.|.+|+..|
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555554444443333322222222333333333444444445555555444455554444
Q ss_pred H
Q 000960 686 T 686 (1208)
Q Consensus 686 A 686 (1208)
.
T Consensus 230 ~ 230 (546)
T PF07888_consen 230 K 230 (546)
T ss_pred H
Confidence 3
No 129
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.78 E-value=0.075 Score=72.50 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 693 (1208)
Q Consensus 614 Kl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~Lq 693 (1208)
++.+++.++.+...+++..+.+..+++.++...++++.++++.+..+...++.|+.|++....++..|+..|+.++..+.
T Consensus 902 ~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 902 EKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666666666666666666666666666666666666666665555444433
No 130
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.77 E-value=0.044 Score=72.64 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCccc
Q 000960 721 HADHIQNELEELVKILNDRCKQYGLRA 747 (1208)
Q Consensus 721 r~~~in~kL~ELEKlL~E~rkq~GL~a 747 (1208)
+...+..++++|++.++...+..|+..
T Consensus 744 ~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 744 AKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 333333444455555555555566544
No 131
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.71 E-value=0.027 Score=63.14 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=62.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea 690 (1208)
|-+|+.++|.++.+++++...-+-+|.-|+...........+-+.+++.||||.+.|...|++..+....|.-.|..-|.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 55888999999988887776666666555543333344445667778899999999999999988877776665555555
Q ss_pred HHHHHHHHHH
Q 000960 691 TFRDIQEKKM 700 (1208)
Q Consensus 691 ~LqDiQ~Q~~ 700 (1208)
++.=+-.|+.
T Consensus 96 qv~~lEgQl~ 105 (307)
T PF10481_consen 96 QVNFLEGQLN 105 (307)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 132
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.71 E-value=0.065 Score=73.08 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCCCCCcCHHHHHH
Q 000960 473 EVLKQVWDLSDQDNDGMLSLKEFCT 497 (1208)
Q Consensus 473 eeL~qIW~LaD~D~DGkLdfdEFvv 497 (1208)
+.|..|+..+-.--.|+|...+|..
T Consensus 770 ~~ls~ii~~fQA~~Rg~l~r~~~~k 794 (1930)
T KOG0161|consen 770 EKLSQIITLFQAAIRGYLARKEFKK 794 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566655555667777777754
No 133
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.71 E-value=0.11 Score=63.32 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=51.4
Q ss_pred hhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 645 RCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 645 R~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.+...|..++.++..++..++.|+.+++.++..+..+..+..........|..++..+...|..+.
T Consensus 292 ~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 292 EAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 334455666667777777888899999999999999998888888888888888887777776555
No 134
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.71 E-value=0.021 Score=61.55 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000960 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK-YKQSGDVASKLTLEEATFRDI 695 (1208)
Q Consensus 617 elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee-~KQvseLessLA~~Ea~LqDi 695 (1208)
++...|....++|-.++.++...+.........|+...++|-..+.+++.|++-.+.+ .....+|+.+|..++..+++.
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~ 137 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEK 137 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH
Confidence 3344456667777788888888888888888888888888888888888877765532 344566677777777777766
Q ss_pred HHHHHHHHHHHH
Q 000960 696 QEKKMELYQAIL 707 (1208)
Q Consensus 696 Q~Q~~eLeaAL~ 707 (1208)
..++..|+..|.
T Consensus 138 ~~ki~~Lek~le 149 (194)
T PF15619_consen 138 EKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHH
Confidence 666666666555
No 135
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.038 Score=70.04 Aligned_cols=109 Identities=20% Similarity=0.262 Sum_probs=50.6
Q ss_pred hhHHHhhhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHhhhhhhH-----HHHH
Q 000960 585 LEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTS---REKIQ-FCSTKMQELILYKSRCDNRLN-----EITE 655 (1208)
Q Consensus 585 ldd~ll~q~s~ee~~~l~~~~qEatEa~KKl~elE~EI~ks---ReKiE-~yrsKmQELqlqksR~~neLn-----el~e 655 (1208)
|.-.+..|++.++++.|..--.+..++..|+..+.++..++ +.-++ .+.+++ ...+..+..++. +...
T Consensus 771 l~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL---~~r~~~l~~ei~~~~d~~~~~ 847 (1200)
T KOG0964|consen 771 LGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKL---YKRVNELEQEIGDLNDSSRRS 847 (1200)
T ss_pred HhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHhhhcccccchh
Confidence 34456678888888776655445555555555554443331 11122 222222 112111122111 1233
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 656 RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQ 696 (1208)
Q Consensus 656 elSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ 696 (1208)
++...+.+++.+..+++...++++.|+..|..+++..++++
T Consensus 848 el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~ 888 (1200)
T KOG0964|consen 848 ELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIK 888 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555444433333
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.70 E-value=0.033 Score=66.53 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHhCCC
Q 000960 471 PREVLKQVWDLSDQD 485 (1208)
Q Consensus 471 peeeL~qIW~LaD~D 485 (1208)
+...+..+++..+.+
T Consensus 79 Sr~v~~~vi~~l~l~ 93 (498)
T TIGR03007 79 SRPNLEKVIRMLDLD 93 (498)
T ss_pred ChHHHHHHHHHcCCC
Confidence 344555666665554
No 137
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.12 Score=58.27 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000960 689 EATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 689 Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
|..+++|..|+.++++.+.
T Consensus 182 e~~~~~L~~qk~e~~~l~~ 200 (265)
T COG3883 182 ETQLNSLNSQKAEKNALIA 200 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 138
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.68 E-value=0.045 Score=68.87 Aligned_cols=17 Identities=35% Similarity=0.259 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHhCCCCC
Q 000960 471 PREVLKQVWDLSDQDND 487 (1208)
Q Consensus 471 peeeL~qIW~LaD~D~D 487 (1208)
+...+.++++..+.+.+
T Consensus 83 Sr~v~~~VV~~L~L~~~ 99 (754)
T TIGR01005 83 SNEILKQVVDKLGLARL 99 (754)
T ss_pred cHHHHHHHHHHcCCCCC
Confidence 45566677776666544
No 139
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.092 Score=66.99 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=34.7
Q ss_pred hhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 647 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 647 ~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
.++.+.+..++.+++++++.+++++++..+++..|+..+..+++.+..++.-..+++++|.
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELK 874 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 4444455555555666666666666666666666666666665555555555555554444
No 140
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.66 E-value=0.065 Score=54.20 Aligned_cols=19 Identities=21% Similarity=0.414 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQF 631 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~ 631 (1208)
.++.+++.++...+++++.
T Consensus 17 ~~~~~~~~~~~~~~~dl~~ 35 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLES 35 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 141
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.63 E-value=0.15 Score=56.28 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 000960 719 QQHADHIQNELEELVKILNDRCKQY 743 (1208)
Q Consensus 719 QEr~~~in~kL~ELEKlL~E~rkq~ 743 (1208)
++.+.....++..+++.+..+|.++
T Consensus 125 ~~~~~~~~~~l~~l~~~l~~~r~~l 149 (302)
T PF10186_consen 125 QNELEERKQRLSQLQSQLARRRRQL 149 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555543
No 142
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.62 E-value=0.05 Score=68.45 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=32.2
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 655 ERVSGDKREVELLAKKYEEKYKQS-GDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (1208)
Q Consensus 655 eelSelKREiQ~Lr~EyEee~KQv-seLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl 709 (1208)
-++.+++++++.|+++++++.+++ ..++..++.+.++.+.|+.++.++++.+.++
T Consensus 316 P~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~ 371 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQA 371 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345556666666666666555443 4455555555666666666666666666543
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.61 E-value=0.15 Score=60.60 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=13.6
Q ss_pred cc---CCCCCCCCcccccCC
Q 000960 925 WG---TFDTHYDAESVWGFD 941 (1208)
Q Consensus 925 wg---~fd~~~d~~s~w~~~ 941 (1208)
|| --||+.-.-||.|+|
T Consensus 351 YG~vvIldhG~gy~slyg~~ 370 (420)
T COG4942 351 YGLVVILDHGGGYHSLYGGN 370 (420)
T ss_pred CceEEEEEcCCccEEEeccc
Confidence 66 568888888888888
No 144
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.60 E-value=0.071 Score=71.25 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=7.9
Q ss_pred Ccc-CCCCCCCCccc
Q 000960 924 SWG-TFDTHYDAESV 937 (1208)
Q Consensus 924 ~wg-~fd~~~d~~s~ 937 (1208)
-|. +|. +.|.|-|
T Consensus 1149 ~w~~~~~-~~~~~~i 1162 (1311)
T TIGR00606 1149 LWRSTYR-GQDIEYI 1162 (1311)
T ss_pred HHHHHcC-ccHHHHh
Confidence 476 666 5556655
No 145
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=0.085 Score=68.20 Aligned_cols=110 Identities=14% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (1208)
Q Consensus 623 ~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eL 702 (1208)
....++.+.++.+++++..+-.+.+..|+.+...+..++.+++..+.++++..+........++.....+.+|+..+..+
T Consensus 380 ~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~ 459 (1293)
T KOG0996|consen 380 KELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKE 459 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777777777777777777666666666666666555555444444444444444444444444333
Q ss_pred HHHHHHHh--cccCcccHHHHHHHHHHHHHHH
Q 000960 703 YQAILKME--GESGDGTLQQHADHIQNELEEL 732 (1208)
Q Consensus 703 eaAL~kl~--~e~eda~LQEr~~~in~kL~EL 732 (1208)
+..|.+.. -+.+.+.+++.++.++.+|..+
T Consensus 460 ~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 460 ERELDEILDSLKQETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 33333222 1112244455555555555533
No 146
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.59 E-value=0.082 Score=66.61 Aligned_cols=93 Identities=26% Similarity=0.361 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH----
Q 000960 601 LNAKLKEATEADKKVEELEKEILTSREKIQ--FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK---- 674 (1208)
Q Consensus 601 l~~~~qEatEa~KKl~elE~EI~ksReKiE--~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee---- 674 (1208)
|...++|+.|++.-..++..++.+...-|| .+.+.|-| ......+++|..+++|+.++.-+++.|+.|++++
T Consensus 285 l~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAE--ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~ 362 (1243)
T KOG0971|consen 285 LKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAE--ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG 362 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444555555545555556666555555 44444433 3444556777777888888888888888887775
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHH
Q 000960 675 -------YKQSGDVASKLTLEEATFRDI 695 (1208)
Q Consensus 675 -------~KQvseLessLA~~Ea~LqDi 695 (1208)
.||+.....+|.++=-+|+|+
T Consensus 363 ~~~ss~qfkqlEqqN~rLKdalVrLRDl 390 (1243)
T KOG0971|consen 363 QAASSYQFKQLEQQNARLKDALVRLRDL 390 (1243)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356555555555554444443
No 147
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.58 E-value=0.13 Score=57.28 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 717 TLQQHADHIQNELEELVKILNDRC 740 (1208)
Q Consensus 717 ~LQEr~~~in~kL~ELEKlL~E~r 740 (1208)
.+++.+.+++.+|.+|..+|+++.
T Consensus 182 ~i~~~L~~~~~kL~Dl~~~l~eA~ 205 (264)
T PF06008_consen 182 AIRDDLNDYNAKLQDLRDLLNEAQ 205 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777776666654
No 148
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.55 E-value=0.21 Score=57.59 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=24.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 659 elKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
.+|.++..+..+++.+.+++.+++.++...+..+.+..+++.+++.+|.+
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444455555555555555555555555554
No 149
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.53 E-value=0.046 Score=67.11 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHH
Q 000960 610 EADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (1208)
Q Consensus 610 Ea~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~Ey 671 (1208)
++..++..++.+|..+-..++.+..-.+.+.....++.+.|..+.++...++.|++.|++.|
T Consensus 279 ~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY 340 (569)
T PRK04778 279 EAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSY 340 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455556666665555555555555555556666666677777777777777777776663
No 150
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.53 E-value=0.061 Score=66.57 Aligned_cols=126 Identities=16% Similarity=0.207 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 617 ELEKEILTSREKIQFCSTKMQEL-ILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 695 (1208)
Q Consensus 617 elE~EI~ksReKiE~yrsKmQEL-qlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDi 695 (1208)
++..|+..+|++.+.+-.++|-. .+..++.+.-=+....++..+....+.|+.++.+..+.+++|+.+|..++..++..
T Consensus 475 dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes 554 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQES 554 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555666666655555554421 12222222222344556666777777788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHH----HHHHHHHHHHHhh
Q 000960 696 QEKKMELYQAILKMEGESGDGTLQQHADHIQNELE----ELVKILNDRCKQY 743 (1208)
Q Consensus 696 Q~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~----ELEKlL~E~rkq~ 743 (1208)
.+.-..|...|...+..++ ..||++..++..++. ++||-||++|..+
T Consensus 555 ~eea~~lR~EL~~QQ~~y~-~alqekvsevEsrl~E~L~~~E~rLNeARREH 605 (739)
T PF07111_consen 555 TEEAAELRRELTQQQEVYE-RALQEKVSEVESRLREQLSEMEKRLNEARREH 605 (739)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887778877776444443 345888887775555 4578888866633
No 151
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.52 E-value=0.0072 Score=65.86 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHH---cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHhhc
Q 000960 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFL---SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 507 (1208)
Q Consensus 438 k~ey~eaF~~fDkD~DG~ISgdELr~~fl---gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~l~ 507 (1208)
...+...|..+|+|+.|+|+.+||...|. ......+.+.-|+.++|.+++|+|++.||....+.|...++
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999995 35688999999999999999999999999988888887764
No 152
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.49 E-value=0.0026 Score=48.87 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH
Q 000960 440 KYTKVFVQVDIDRDGKITGEQAYNLFL 466 (1208)
Q Consensus 440 ey~eaF~~fDkD~DG~ISgdELr~~fl 466 (1208)
+++++|+.+|+|+||+|+.+|++.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 478999999999999999999999884
No 153
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.49 E-value=0.077 Score=63.67 Aligned_cols=126 Identities=16% Similarity=0.269 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKM-----QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKm-----QELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA 686 (1208)
.+|+..++.++..+|.|+..|.+.. +|- ...+-|..+|+.+..++..+..+|+.+-.++...+-.+..|.++|.
T Consensus 165 ~ekLk~~~een~~lr~k~~llk~Et~~~~~keq-~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~ 243 (596)
T KOG4360|consen 165 QEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQ-QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLV 243 (596)
T ss_pred HhhcCChHHHHHHHHHHHHHHHhhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777766554331 121 2234577778888777777777777766666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 687 LEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRC 740 (1208)
Q Consensus 687 ~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~r 740 (1208)
++...++-+.-++.+|-+-|+++.+.. ..|+...++++-|++|++..+.|+-
T Consensus 244 d~qkk~k~~~~Ekeel~~~Lq~~~da~--~ql~aE~~EleDkyAE~m~~~~Eae 295 (596)
T KOG4360|consen 244 DLQKKIKYLRHEKEELDEHLQAYKDAQ--RQLTAELEELEDKYAECMQMLHEAE 295 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777888888888766433 3456666677766666654444443
No 154
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.48 E-value=0.18 Score=63.80 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=26.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHH
Q 000960 609 TEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL 666 (1208)
Q Consensus 609 tEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~ 666 (1208)
.|+++++..+..++.+..++++.++.+.++|+....+..++++++.++-+.+.+.++.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444444444444444444444444433333333333
No 155
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=0.14 Score=65.57 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=35.7
Q ss_pred HHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 642 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 642 qksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.....+..|.++..+++.++.++..|+.++......+..+++.|.++.+.++++-.++..+.....++.
T Consensus 830 e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~ 898 (1174)
T KOG0933|consen 830 EISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCL 898 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHH
Confidence 333444444455555555555555555555555555555555555555555555555544444444433
No 156
>PRK12704 phosphodiesterase; Provisional
Probab=96.44 E-value=0.15 Score=62.40 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=14.9
Q ss_pred HHHHHHHHhhCccc---CcccccccccC
Q 000960 734 KILNDRCKQYGLRA---KPTLLVELPFG 758 (1208)
Q Consensus 734 KlL~E~rkq~GL~a---K~~~~vElp~g 758 (1208)
+.+..+.|+|.-.. +-...|.||--
T Consensus 192 ~i~~~a~qr~a~~~~~e~~~~~v~lp~d 219 (520)
T PRK12704 192 EILAQAIQRCAADHVAETTVSVVNLPND 219 (520)
T ss_pred HHHHHHHHhhcchhhhhhceeeeecCCc
Confidence 55666677665222 33458888864
No 157
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=96.40 E-value=0.037 Score=62.24 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=56.6
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CcccHHHHHHHHHH
Q 000960 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES--GDGTLQQHADHIQN 727 (1208)
Q Consensus 650 Lnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~--eda~LQEr~~~in~ 727 (1208)
|.+-..||.+||-++-++|...=++ .|-.||++|| |+.++..|.||++.+..|+.-- -|.-+|.|--.||+
T Consensus 84 l~dRetEI~eLksQL~RMrEDWIEE--ECHRVEAQLA-----LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINi 156 (305)
T PF15290_consen 84 LHDRETEIDELKSQLARMREDWIEE--ECHRVEAQLA-----LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINI 156 (305)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhh
Confidence 3334455666776666666553332 2567777774 5555666777777777666222 24667999999999
Q ss_pred HHHHHHHHHH--HHHHh
Q 000960 728 ELEELVKILN--DRCKQ 742 (1208)
Q Consensus 728 kL~ELEKlL~--E~rkq 742 (1208)
+-..||.||. |.+|.
T Consensus 157 QN~KLEsLLqsMElAq~ 173 (305)
T PF15290_consen 157 QNKKLESLLQSMELAQS 173 (305)
T ss_pred hHhHHHHHHHHHHHHHh
Confidence 9999998887 44443
No 158
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.40 E-value=0.22 Score=61.92 Aligned_cols=119 Identities=23% Similarity=0.280 Sum_probs=72.0
Q ss_pred hhcHHHHHHHHHHHHHHHH-HhHHH----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhHHHHHHhhh
Q 000960 592 QLSKEEQESLNAKLKEATE-ADKKV----EELEKEILTSREKIQFCSTKMQE-------LILYKSRCDNRLNEITERVSG 659 (1208)
Q Consensus 592 q~s~ee~~~l~~~~qEatE-a~KKl----~elE~EI~ksReKiE~yrsKmQE-------LqlqksR~~neLnel~eelSe 659 (1208)
+.-++|++++-++++-... ++.+| .+.+.+++++++++..++..+++ +..+-.-+.+.+.+.+++...
T Consensus 481 qqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~ 560 (739)
T PF07111_consen 481 QQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAE 560 (739)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3447889999888763332 33333 33345555555554444444443 334444445556666777777
Q ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 660 DKREVELLAKKYEEKYK-QSGDVASK----LTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 660 lKREiQ~Lr~EyEee~K-QvseLess----LA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
+++++..-+..|+.... .|++|+.+ |++.|.+|++++..+...--+|-+++
T Consensus 561 lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~q 616 (739)
T PF07111_consen 561 LRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQ 616 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777776654 56777654 56667888888877765555554433
No 159
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.39 E-value=0.22 Score=61.60 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcc
Q 000960 716 GTLQQHADHIQNELEELVKILNDRCKQYGLRAKPT 750 (1208)
Q Consensus 716 a~LQEr~~~in~kL~ELEKlL~E~rkq~GL~aK~~ 750 (1208)
..++..|++++..|.+-|.-.++..|+.+-.-.++
T Consensus 608 d~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPL 642 (961)
T KOG4673|consen 608 DMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPL 642 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH
Confidence 34577777777777777777777777776554444
No 160
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.38 E-value=0.1 Score=62.35 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=4.6
Q ss_pred ccccchhhhhh
Q 000960 779 DEGFTFVKELT 789 (1208)
Q Consensus 779 d~gf~~~~~~t 789 (1208)
|..|.-..|+.
T Consensus 439 d~~i~~~~~ie 449 (498)
T TIGR03007 439 RPTVRSVRDLR 449 (498)
T ss_pred cCcCCCHHHHH
Confidence 44444444443
No 161
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.37 E-value=0.33 Score=52.44 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRL-NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 694 (1208)
Q Consensus 616 ~elE~EI~ksReKiE~yrsKmQELqlqksR~~neL-nel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqD 694 (1208)
..++.++.+..++++.|+.+.+.- +.++ .++| ...-.++..+..+++.|+..|++...++..|...|..++..|++
T Consensus 54 ~~le~~~~~~~~~~~~~~~~A~~A-l~~g--~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e 130 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEKQAELA-LAAG--REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEE 130 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555444443221 1111 2222 33445566666677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 000960 695 IQEKKMELYQAIL 707 (1208)
Q Consensus 695 iQ~Q~~eLeaAL~ 707 (1208)
++.++..|.+-..
T Consensus 131 ~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 131 LKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766655443
No 162
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.36 E-value=0.17 Score=54.73 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=48.3
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHH
Q 000960 652 EITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEE 731 (1208)
Q Consensus 652 el~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~E 731 (1208)
++-+-|..-..||..|+.++-....++.+++.+|...++.|..++.++..|+.- .+.+.=.+...|+.++..++.++++
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L-~~dknL~eReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKL-SEDKNLAEREELQRKLSQLEQKLQE 136 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCchhHHHHHHHHHHHHHHHHH
Confidence 333334455666666777766666666666666666666666666666654433 2222222345566666666666664
Q ss_pred HHHHHHH
Q 000960 732 LVKILND 738 (1208)
Q Consensus 732 LEKlL~E 738 (1208)
-++....
T Consensus 137 ~~~ki~~ 143 (194)
T PF15619_consen 137 KEKKIQE 143 (194)
T ss_pred HHHHHHH
Confidence 4433333
No 163
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.36 E-value=0.0048 Score=63.82 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH---HcCCCCHHHH----HHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 441 YTKVFVQVDIDRDGKITGEQAYNLF---LSWRLPREVL----KQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 441 y~eaF~~fDkD~DG~ISgdELr~~f---lgs~LpeeeL----~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
..-+|+.+|-|+|++|..++|...+ ....|+.+++ .+|++++|.|+||+|++.||- |+|-++
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe---~~i~ra 178 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE---HVILRA 178 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH---HHHHhC
Confidence 3457999999999999999999888 3568888876 456789999999999999998 666654
No 164
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.34 E-value=0.19 Score=56.71 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhC
Q 000960 731 ELVKILNDRCKQYG 744 (1208)
Q Consensus 731 ELEKlL~E~rkq~G 744 (1208)
+|..+|.+.|.+|-
T Consensus 166 dL~~~L~eiR~~ye 179 (312)
T PF00038_consen 166 DLSAALREIRAQYE 179 (312)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHH
Confidence 45566666666554
No 165
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.32 E-value=0.28 Score=62.78 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh
Q 000960 634 TKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL---KME 710 (1208)
Q Consensus 634 sKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~---kl~ 710 (1208)
.+.+++..-..+...+|+.+..++.++|+.++.+.+.|+...++|.+|++.+-..|.+-.+|+.||.-|...-+ .++
T Consensus 488 ~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LE 567 (1195)
T KOG4643|consen 488 NQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLE 567 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344444444556667777778888888888888999999999999999988888888888888777766222 222
Q ss_pred cccCc-----ccHHHHHHHHHHHHHHHHHHHHH
Q 000960 711 GESGD-----GTLQQHADHIQNELEELVKILND 738 (1208)
Q Consensus 711 ~e~ed-----a~LQEr~~~in~kL~ELEKlL~E 738 (1208)
+.+.+ ..|+.||+-++.--.++||+..+
T Consensus 568 q~~n~lE~~~~elkk~idaL~alrrhke~LE~e 600 (1195)
T KOG4643|consen 568 QNNNDLELIHNELKKYIDALNALRRHKEKLEEE 600 (1195)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 55677777777444455555544
No 166
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.31 E-value=0.0037 Score=47.89 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH
Q 000960 440 KYTKVFVQVDIDRDGKITGEQAYNLFL 466 (1208)
Q Consensus 440 ey~eaF~~fDkD~DG~ISgdELr~~fl 466 (1208)
+|+++|+.+|+|++|+|+.+|++.+|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578889999999999999999888875
No 167
>PRK00106 hypothetical protein; Provisional
Probab=96.30 E-value=0.21 Score=61.30 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=14.8
Q ss_pred HHHHHHHHhhCccc---CcccccccccC
Q 000960 734 KILNDRCKQYGLRA---KPTLLVELPFG 758 (1208)
Q Consensus 734 KlL~E~rkq~GL~a---K~~~~vElp~g 758 (1208)
..+..+.|+|.-.. +-...|.||--
T Consensus 207 ~ii~~aiqr~a~~~~~e~tvs~v~lp~d 234 (535)
T PRK00106 207 DLLAQAMQRLAGEYVTEQTITTVHLPDD 234 (535)
T ss_pred HHHHHHHHHhcchhhhhheeeeEEcCCh
Confidence 55666667665222 44458888863
No 168
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.29 E-value=0.3 Score=54.57 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=46.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 623 LTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK----KYEEKYKQSGDVASKLTLEEATFRDIQE 697 (1208)
Q Consensus 623 ~ksReKiE-~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~----EyEee~KQvseLessLA~~Ea~LqDiQ~ 697 (1208)
++...++| .+.+++++|+.....++-+-+. ++-|++++.. +|-+-++|+..|+..|+-+.+.-.+++.
T Consensus 40 QegSrE~EaelesqL~q~etrnrdl~t~nqr-------l~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~k 112 (333)
T KOG1853|consen 40 QEGSREIEAELESQLDQLETRNRDLETRNQR-------LTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRK 112 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555 5555655555444433333333 3334443333 3344457777777777777777777777
Q ss_pred HHHHHHHHHHHHh
Q 000960 698 KKMELYQAILKME 710 (1208)
Q Consensus 698 Q~~eLeaAL~kl~ 710 (1208)
.+++|++|=..|+
T Consensus 113 yiReLEQaNDdLE 125 (333)
T KOG1853|consen 113 YIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHhccHHH
Confidence 7888887766555
No 169
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.28 E-value=0.3 Score=60.87 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=7.8
Q ss_pred CcccCcccccchhc
Q 000960 758 GWQPGIQEGTADWD 771 (1208)
Q Consensus 758 g~~~~~qe~a~~w~ 771 (1208)
+|++...|+-++..
T Consensus 245 ~~q~l~~e~e~L~~ 258 (617)
T PF15070_consen 245 AYQQLASEKEELHK 258 (617)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666556555543
No 170
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.27 E-value=0.17 Score=67.91 Aligned_cols=10 Identities=40% Similarity=0.783 Sum_probs=6.4
Q ss_pred CCCCCCccCCC
Q 000960 919 GFDEPSWGTFD 929 (1208)
Q Consensus 919 ~~d~~~wg~fd 929 (1208)
..|||+.+ +|
T Consensus 1228 ~lDEPt~~-lD 1237 (1311)
T TIGR00606 1228 ALDEPTTN-LD 1237 (1311)
T ss_pred EeeCCccc-CC
Confidence 45788766 44
No 171
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.26 E-value=0.12 Score=63.42 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 000960 618 LEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 677 (1208)
Q Consensus 618 lE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQ 677 (1208)
.+..+.+..++|+.+-..|+.-...+..++..+..+...|..++.+.+.|..+++.....
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445555555533333333333444444455555555555555555566555555544
No 172
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.24 E-value=0.22 Score=60.83 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=14.7
Q ss_pred HHHHHHHHhhCcc--c-CcccccccccC
Q 000960 734 KILNDRCKQYGLR--A-KPTLLVELPFG 758 (1208)
Q Consensus 734 KlL~E~rkq~GL~--a-K~~~~vElp~g 758 (1208)
+.+..+.|+|.-. + .-...|.||--
T Consensus 186 ~i~~~aiqr~a~~~~~e~~~~~v~lp~d 213 (514)
T TIGR03319 186 EILATAIQRYAGDHVAETTVSVVNLPND 213 (514)
T ss_pred HHHHHHHHhccchhhhhheeeeEEcCCh
Confidence 5566677766522 2 33357888863
No 173
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.24 E-value=0.2 Score=67.45 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 000960 637 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA 682 (1208)
Q Consensus 637 QELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLe 682 (1208)
.++.....++.+++....+++.+++.+++.|+.++++..+++.+|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 279 DQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444555555555555555555555555555555555544
No 174
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.13 Score=62.65 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE-- 689 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~E-- 689 (1208)
..+..-+++....++.++..|+.=|.++...++.-.+.|+.++++|.+..-|++.|+++.++-+++|.-.-=..++.|
T Consensus 258 ~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~m 337 (581)
T KOG0995|consen 258 PGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERM 337 (581)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 344444455555666666666666666666666666667777776666666666666666666555543321122222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHh
Q 000960 690 -ATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 690 -a~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
..++.++.-+..++-++.++.
T Consensus 338 n~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 338 NLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554443
No 175
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.21 E-value=0.0093 Score=70.22 Aligned_cols=55 Identities=27% Similarity=0.348 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHH
Q 000960 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVT 74 (1208)
Q Consensus 9 ~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LVa 74 (1208)
..+++.+|+.+|.|+||+|+.+|+.. +..+|+.+|.|+||.|+++||..+|+-+-
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 46788999999999999999999842 58899999999999999999999887653
No 176
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.21 E-value=0.097 Score=65.10 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 000960 619 EKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE---EATFRDI 695 (1208)
Q Consensus 619 E~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~---Ea~LqDi 695 (1208)
+.++..++++++.+..+++..+..+.+...-..+.+++|.++.+.+++++.+..+..+.+..+++-.+.+ -.+=+++
T Consensus 86 q~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eL 165 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNREL 165 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHH
Confidence 4445556666666666665544444444332345567777777777777666665555555554332222 1223455
Q ss_pred HHHHHHHHHHHHHHhc
Q 000960 696 QEKKMELYQAILKMEG 711 (1208)
Q Consensus 696 Q~Q~~eLeaAL~kl~~ 711 (1208)
..|+.+|+.+.++|..
T Consensus 166 K~QL~Elq~~Fv~ltn 181 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTN 181 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555543
No 177
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=96.20 E-value=0.24 Score=53.03 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=52.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHH-HHHHHHHHHHHHHHh-cccCcccHHHHHHHHH
Q 000960 652 EITERVSGDKREVELLAKKYEEKYKQSGDVA-SKLTLEEAT--FRDI-QEKKMELYQAILKME-GESGDGTLQQHADHIQ 726 (1208)
Q Consensus 652 el~eelSelKREiQ~Lr~EyEee~KQvseLe-ssLA~~Ea~--LqDi-Q~Q~~eLeaAL~kl~-~e~eda~LQEr~~~in 726 (1208)
++..++++..---..|+++++-+.+.|...+ ++-...|.+ ++.. +....++.+.|.+++ =+.+|.-|...+....
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae 140 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAE 140 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555554433 222222222 2222 222455666666666 5556677888888888
Q ss_pred HHHHHHH-HHHHHHHHhhC
Q 000960 727 NELEELV-KILNDRCKQYG 744 (1208)
Q Consensus 727 ~kL~ELE-KlL~E~rkq~G 744 (1208)
.||++|| ||++|.++.+=
T Consensus 141 ~Ki~~LE~KL~eEehqRKl 159 (178)
T PF14073_consen 141 TKIKELEEKLQEEEHQRKL 159 (178)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999997 88888888653
No 178
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.20 E-value=0.16 Score=58.38 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 614 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 693 (1208)
Q Consensus 614 Kl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~Lq 693 (1208)
.+.++++++.++.++.+.+...+++|+....+..+ ++.+++.+.+.|..+-++..+..+.++-.+...+..++
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~-------el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQ-------ELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD 116 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544444443 44444444455554444445555555555555566666
Q ss_pred HHHHHHHHHHHHHHHHhcccCc-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcc
Q 000960 694 DIQEKKMELYQAILKMEGESGD-----------------------GTLQQHADHIQNELEELVKILNDRCKQYGLRAKPT 750 (1208)
Q Consensus 694 DiQ~Q~~eLeaAL~kl~~e~ed-----------------------a~LQEr~~~in~kL~ELEKlL~E~rkq~GL~aK~~ 750 (1208)
.+.+|+.-+.+.|.+|+.-+.- .+.+.--.+||+-+-++--||.=.++++++..+.
T Consensus 117 sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~- 195 (314)
T PF04111_consen 117 SLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR- 195 (314)
T ss_dssp HHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS-
T ss_pred HHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc-
Confidence 6677776666777665532211 2336778899999988888898889988877542
Q ss_pred cccccccCcccCccccc
Q 000960 751 LLVELPFGWQPGIQEGT 767 (1208)
Q Consensus 751 ~~vElp~g~~~~~qe~a 767 (1208)
|.=.|.|-.--|....
T Consensus 196 -y~l~P~Gs~S~I~~~~ 211 (314)
T PF04111_consen 196 -YRLVPMGSFSKIEKLE 211 (314)
T ss_dssp -EEEE--GGG-EEEECS
T ss_pred -ceeEecCCCCEEEEec
Confidence 4444555554444433
No 179
>PRK11281 hypothetical protein; Provisional
Probab=96.19 E-value=0.21 Score=65.84 Aligned_cols=58 Identities=7% Similarity=0.084 Sum_probs=30.4
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 651 NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 651 nel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
++++++++++..+++.+++++.+..+++.+++.+.+-+.+++..++.+++|+.+.|..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444555555555555555555555555555554444444555555555555555543
No 180
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.17 E-value=0.21 Score=58.83 Aligned_cols=14 Identities=36% Similarity=0.285 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhCCC
Q 000960 472 REVLKQVWDLSDQD 485 (1208)
Q Consensus 472 eeeL~qIW~LaD~D 485 (1208)
...+..+++..+..
T Consensus 79 ~~v~~~Vi~~l~l~ 92 (444)
T TIGR03017 79 DRVAKKVVDKLKLD 92 (444)
T ss_pred HHHHHHHHHHcCCC
Confidence 34455555555544
No 181
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.17 E-value=0.22 Score=50.50 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTK 635 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsK 635 (1208)
.++..+..++....+.+...+.+
T Consensus 24 ~~~~~~~~dl~~q~~~a~~Aq~~ 46 (132)
T PF07926_consen 24 EQLQSLREDLESQAKIAQEAQQK 46 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 182
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.12 E-value=0.4 Score=62.02 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=43.3
Q ss_pred hhhhhhHHHHHHhhhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 000960 645 RCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGT 717 (1208)
Q Consensus 645 R~~neLnel~eelSelKREiQ~Lr~EyEee~-------KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~ 717 (1208)
.++.-+.+..++|.+|.+.++.|+-++-+.- |.+..+..+-..+|..++.||.++.-+.+-|++--.+. +.
T Consensus 1609 ~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~--~~ 1686 (1758)
T KOG0994|consen 1609 AAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGS--QA 1686 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hh
Confidence 3444556666777777777777666654432 22223333334446668888888775555555422333 22
Q ss_pred HHHHHHHHHH
Q 000960 718 LQQHADHIQN 727 (1208)
Q Consensus 718 LQEr~~~in~ 727 (1208)
-|+|++++..
T Consensus 1687 ar~rAe~L~~ 1696 (1758)
T KOG0994|consen 1687 ARERAEQLRT 1696 (1758)
T ss_pred HHHHHHHHHH
Confidence 2455554443
No 183
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.12 E-value=0.26 Score=63.66 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHH----
Q 000960 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK---KYEEKYKQSGDVASKLTL----EEAT---- 691 (1208)
Q Consensus 623 ~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~---EyEee~KQvseLessLA~----~Ea~---- 691 (1208)
...-+++..|.++|++|+.+......+-+++.+.+-..|.+.++.++ .+++.++.+.+|-++.+. +..+
T Consensus 1615 ~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L 1694 (1758)
T KOG0994|consen 1615 TSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQL 1694 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 44445666777777777766654444444444333333333332222 333334444444322111 1111
Q ss_pred -------HHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 692 -------FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (1208)
Q Consensus 692 -------LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq 742 (1208)
|.+++++++.|. .|+..+++. +.+++....+|+.|||-+++..+.
T Consensus 1695 ~~eA~~Ll~~a~~kl~~l~----dLe~~y~~~--~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1695 RTEAEKLLGQANEKLDRLK----DLELEYLRN--EQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHhhh--hHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333222 222222221 356667777777777666665553
No 184
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.11 E-value=0.58 Score=52.81 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 000960 598 QESLNAKLKEATE-ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK 676 (1208)
Q Consensus 598 ~~~l~~~~qEatE-a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~K 676 (1208)
...++.++++.+| .++++..++.++..+..+|...+..+.-|..|+. + +.--...+|+.|.|+|+.|+...+.+.-
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~--EYPvK~vqIa~L~rqlq~lk~~qqdEld 141 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-H--EYPVKAVQIANLVRQLQQLKDSQQDELD 141 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556665554 4578888888888888888888888888888876 2 2334445799999999999888777765
Q ss_pred HHHHH
Q 000960 677 QSGDV 681 (1208)
Q Consensus 677 QvseL 681 (1208)
.+.++
T Consensus 142 el~e~ 146 (258)
T PF15397_consen 142 ELNEM 146 (258)
T ss_pred HHHHH
Confidence 55443
No 185
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.09 E-value=0.036 Score=53.43 Aligned_cols=69 Identities=9% Similarity=0.150 Sum_probs=57.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHh-------CCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhcC
Q 000960 10 DLFEAYFRRADLDGDGQISGAEAVAFFQG-------SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVAQSK 79 (1208)
Q Consensus 10 ~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~-------SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValAQ~G 79 (1208)
.....+|..+-. ..+.++..|++.+|.+ ..-.+..|.+|....|.|+||.|++.||+.-+.-+++|...
T Consensus 8 ~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~~ 83 (91)
T cd05024 8 EKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIACND 83 (91)
T ss_pred HHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 456778888874 3569999999999855 34578999999999999999999999999999888888653
No 186
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.08 E-value=0.17 Score=68.47 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHhhhcHHHHH
Q 000960 619 EKEILTSREKIQFCSTKMQELILY-KSRCDNRLNEITERVSGDKREVE 665 (1208)
Q Consensus 619 E~EI~ksReKiE~yrsKmQELqlq-ksR~~neLnel~eelSelKREiQ 665 (1208)
..++..++...+.|..+.|+|..+ +..--++++.+..+|..|+.+++
T Consensus 1277 ~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555443 33333333444434444443333
No 187
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.07 E-value=0.012 Score=69.31 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH---h---CCCCHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHH
Q 000960 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQ---G---SNLPKQVLAQVWSHADQRKAGFLNRAEFFNALKLVTVA 76 (1208)
Q Consensus 9 ~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~---~---SgLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~LValA 76 (1208)
+.-.+.||+++|.|+.|.|+.+|++.... . -.+..+.+.++-+..|-++||+++..||..|.+||...
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 44578899999999999999999977543 2 26899999999999999999999999999999999874
No 188
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.013 Score=68.65 Aligned_cols=62 Identities=23% Similarity=0.473 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 438 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 438 k~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
..++.++|..+|.++||.|..+|+...| ++.+|..+++++|++-+|.++++.|+++||-.-|
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 4678899999999999999999999999 6889999999999999999999999999997644
No 189
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.02 E-value=0.21 Score=57.72 Aligned_cols=124 Identities=20% Similarity=0.215 Sum_probs=74.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhhhhHHHHHHhhhcHHHHHHHHHHHH
Q 000960 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYK--------------SRCDNRLNEITERVSGDKREVELLAKKYE 672 (1208)
Q Consensus 607 EatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqk--------------sR~~neLnel~eelSelKREiQ~Lr~EyE 672 (1208)
|.+..+..+.+|...+..++++-..+.+++.++.... .....-|.+.+++...|+.|++.|+++|.
T Consensus 17 eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~ 96 (319)
T PF09789_consen 17 ELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLN 96 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555221 22224567778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHH
Q 000960 673 EKYKQSGDVASKLTLEE-------------------ATFRDIQEKKMELYQAILKMEGESGD-----GTLQQHADHIQNE 728 (1208)
Q Consensus 673 ee~KQvseLessLA~~E-------------------a~LqDiQ~Q~~eLeaAL~kl~~e~ed-----a~LQEr~~~in~k 728 (1208)
+-...+.-|-.+++..+ .+|-.++.|+.+|+-.|+.+.++.++ -..+.+..++|.+
T Consensus 97 E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~E 176 (319)
T PF09789_consen 97 EAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHE 176 (319)
T ss_pred HHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777776655531 22555666666666666655444433 2235556666655
Q ss_pred HH
Q 000960 729 LE 730 (1208)
Q Consensus 729 L~ 730 (1208)
|-
T Consensus 177 Ln 178 (319)
T PF09789_consen 177 LN 178 (319)
T ss_pred HH
Confidence 54
No 190
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.01 E-value=0.66 Score=50.28 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (1208)
Q Consensus 623 ~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eL 702 (1208)
+++.+++.-++.+|+-++.-...+ +.+++++..+|-.+..|+.++..-++|...++.....+.+.+..+|++...|
T Consensus 39 a~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 39 AQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444555555666665554332222 4455666666666666666666666666666666555666666666665555
Q ss_pred HHHHHHHh
Q 000960 703 YQAILKME 710 (1208)
Q Consensus 703 eaAL~kl~ 710 (1208)
......+.
T Consensus 115 ~~e~~~lk 122 (193)
T PF14662_consen 115 LAERDGLK 122 (193)
T ss_pred HHhhhhHH
Confidence 55555443
No 191
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.01 E-value=0.13 Score=63.79 Aligned_cols=25 Identities=4% Similarity=0.117 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 676 KQSGDVASKLTLEEATFRDIQEKKM 700 (1208)
Q Consensus 676 KQvseLessLA~~Ea~LqDiQ~Q~~ 700 (1208)
..+..|+.-+...+.++..|+.|-.
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455444444555555555533
No 192
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.024 Score=66.58 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--cCC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 000960 433 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWR-LPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1208)
Q Consensus 433 LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~fl--gs~-LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~ 503 (1208)
+.++...+++.+|+.||.+++|+|+.++|...|. +.. ...+-...|+..+|.|.||.+||.||..-|.--+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E 81 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE 81 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH
Confidence 4566678999999999999999999999998884 333 5567788899999999999999999987544333
No 193
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.98 E-value=0.25 Score=49.99 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 614 KVEELEKEILTSREKIQFCSTKMQE----LILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (1208)
Q Consensus 614 Kl~elE~EI~ksReKiE~yrsKmQE----LqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~E 689 (1208)
.+..++.|+..++.++..+.....+ |+.-..++ ++++....++..++++++.|+++|+.....+.+-.+.+..++
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~-e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEEN-EELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3444555555555554433333222 22222222 224455556666666666666666666666666555665566
Q ss_pred HHHHHHHHHHHH
Q 000960 690 ATFRDIQEKKME 701 (1208)
Q Consensus 690 a~LqDiQ~Q~~e 701 (1208)
+.++|++.-+.+
T Consensus 103 ~Dv~DlK~myr~ 114 (120)
T PF12325_consen 103 ADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 194
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.98 E-value=0.29 Score=48.61 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 660 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 660 lKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
|+.-++.|+++-+...+.|.+|+.+|+++...+.+-.-.+.+|+..|.+
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444545555554444444444433333344444443
No 195
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.96 E-value=0.25 Score=64.99 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000960 717 TLQQHADHIQNELEELVKILNDRCKQY 743 (1208)
Q Consensus 717 ~LQEr~~~in~kL~ELEKlL~E~rkq~ 743 (1208)
.++.++.+++.+++.|...++++|++.
T Consensus 212 l~~~~~~~l~~~~~~Lq~~in~kR~~~ 238 (1109)
T PRK10929 212 LAKKRSQQLDAYLQALRNQLNSQRQRE 238 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666667777766643
No 196
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.96 E-value=0.38 Score=62.40 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=9.3
Q ss_pred HHHHHHHHHhCCCC
Q 000960 439 QKYTKVFVQVDIDR 452 (1208)
Q Consensus 439 ~ey~eaF~~fDkD~ 452 (1208)
..++++|+.++..+
T Consensus 166 Ral~~IFd~Le~~~ 179 (1041)
T KOG0243|consen 166 RALRQIFDTLEAQG 179 (1041)
T ss_pred HHHHHHHHHHHhcC
Confidence 34677788886554
No 197
>PRK11281 hypothetical protein; Provisional
Probab=95.95 E-value=0.074 Score=69.85 Aligned_cols=45 Identities=9% Similarity=0.026 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 666 LLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 666 ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.++.++++..+++++++++|+..+.+...+|+++.+..+.|++++
T Consensus 132 q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 132 QTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444445555555555666666555
No 198
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.95 E-value=0.43 Score=60.90 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 621 EILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 700 (1208)
Q Consensus 621 EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~ 700 (1208)
|+..++.+++....+-.+.......+...|....++.+-|.-+++.||.+|+.+..++...+.+|..++..+..++..+.
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~ 381 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE 381 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344443333444444444455556666677777788888889999999999998888888888777777777777
Q ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHH
Q 000960 701 ELYQAILKMEGESGDGTLQQHADHIQNELE 730 (1208)
Q Consensus 701 eLeaAL~kl~~e~eda~LQEr~~~in~kL~ 730 (1208)
+|.+.|.+-+.+. ..||.+|+.+.-.|.
T Consensus 382 ~l~d~~d~~e~ki--~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 382 DLRDMLDKKERKI--NVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 7777777633222 344444444444443
No 199
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.91 E-value=0.27 Score=57.92 Aligned_cols=38 Identities=5% Similarity=0.127 Sum_probs=17.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 651 NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1208)
Q Consensus 651 nel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~ 688 (1208)
..+..++.+++.++..|+..|-.++-++.+++.+|+.+
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l 294 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSL 294 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 34445555555555555554444444444444443333
No 200
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.90 E-value=0.95 Score=47.02 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 695 (1208)
Q Consensus 616 ~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDi 695 (1208)
..++..|..+..+++..+...+.++.....+..++..+.++|..+..+++.|+.++....+.... +...++..
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~-------L~k~lq~~ 92 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKEN-------LDKELQKK 92 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333344333333333222 33334444
Q ss_pred HHHHHHHHHHHH
Q 000960 696 QEKKMELYQAIL 707 (1208)
Q Consensus 696 Q~Q~~eLeaAL~ 707 (1208)
|+|+.+|+....
T Consensus 93 q~kv~eLE~~~~ 104 (140)
T PF10473_consen 93 QEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHhH
Confidence 555554444433
No 201
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=95.88 E-value=0.26 Score=55.73 Aligned_cols=93 Identities=24% Similarity=0.347 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 628 KIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 628 KiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
+++||++++.|+...+...++ ......++...+|.++..+.+++.... .|+..|..+++++.|+.++.+-|.
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~-~~~~e~eke~~~r~l~~~~~ELe~~~E-------eL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQ-HETREEEKEEKDRKLELKKEELEELEE-------ELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466999999997766554432 233444555566666666666555544 444455556666666666666665
Q ss_pred HHhcccCcccHHHHHHHHHHHHH
Q 000960 708 KMEGESGDGTLQQHADHIQNELE 730 (1208)
Q Consensus 708 kl~~e~eda~LQEr~~~in~kL~ 730 (1208)
.++.+. .-|.+++.-+..|.+
T Consensus 239 ~l~~~~--~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 239 ELEMES--TRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHH--HHHHHHHHHHHHHHH
Confidence 544333 345566666666655
No 202
>PRK01156 chromosome segregation protein; Provisional
Probab=95.87 E-value=0.59 Score=60.15 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 676 KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
+.+.+|++.+..++..+..+...+.+|..++..|.
T Consensus 416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~ 450 (895)
T PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN 450 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555555556666666665555443
No 203
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.2 Score=63.89 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000960 690 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYG 744 (1208)
Q Consensus 690 a~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq~G 744 (1208)
+.|+.+..++.+-+..|.+++-.+ +.|++....+..+|..|++.+.+...+.|
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky--~~l~~ee~~~~~rl~~l~~~~~~l~~Kqg 380 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKY--NSLVDEEKRLKKRLAKLEQKQRDLLAKQG 380 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666666666666666666555 55566666666666666655555544444
No 204
>PF13514 AAA_27: AAA domain
Probab=95.86 E-value=0.43 Score=63.03 Aligned_cols=56 Identities=27% Similarity=0.440 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHH
Q 000960 676 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEE 731 (1208)
Q Consensus 676 KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~E 731 (1208)
..+.+++..|..++.++++++.++.+++..|..+.++..-..|.++...+..+|.+
T Consensus 896 ~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~ 951 (1111)
T PF13514_consen 896 AELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEE 951 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 44555566666667777777777777788888777544334455555555555553
No 205
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.85 E-value=0.44 Score=58.32 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=30.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEE 673 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEe 673 (1208)
+...|.....++..++..++.++..+........+..+++......+..|+.+++.++.+++.
T Consensus 293 ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 293 AKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 334444444445555555555555555444444444444444444455555555555555443
No 206
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.84 E-value=0.7 Score=55.34 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 686 TLEEATFRDIQEKKMELYQAILKM 709 (1208)
Q Consensus 686 A~~Ea~LqDiQ~Q~~eLeaAL~kl 709 (1208)
+.+++++.+++.++.+++.+|..+
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555555555555555544
No 207
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.83 E-value=0.26 Score=49.77 Aligned_cols=86 Identities=13% Similarity=0.324 Sum_probs=46.0
Q ss_pred hhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHH
Q 000960 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDV---ASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADH 724 (1208)
Q Consensus 648 neLnel~eelSelKREiQ~Lr~EyEee~KQvseL---essLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~ 724 (1208)
.++..++.+++.+.++.+.|+.||=.-.+.+.++ .+.+..++..+++++.||. ++..|-|+. -|+.++
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~----t~LellGEK-----~E~veE 100 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ----TLLELLGEK-----SEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcch-----HHHHHH
Confidence 3333334444444444444444433333333222 2334455666667666665 333444666 577788
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000960 725 IQNELEELVKILNDRCKQ 742 (1208)
Q Consensus 725 in~kL~ELEKlL~E~rkq 742 (1208)
++.++.+|+.+.....++
T Consensus 101 L~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 101 LRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888776665554
No 208
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.82 E-value=0.53 Score=58.61 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=49.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHH---HHHHHHHHHHHHHH
Q 000960 607 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK---KYEEKYKQSGDVAS 683 (1208)
Q Consensus 607 EatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~---EyEee~KQvseLes 683 (1208)
|..++++++.++..++.+...+++.++..++++.....+...+..++.+++.-.++-++.|.. -+++-...|.+-++
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~ 408 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQ 408 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666666666555555555555555554444433333333221 12222233344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 684 KLTLEEATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 684 sLA~~Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
+|..+..+|...+.-+.+-+..|.
T Consensus 409 rl~~L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 409 RLVELAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555555555444444444
No 209
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=95.82 E-value=0.11 Score=54.29 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=65.9
Q ss_pred hhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHH
Q 000960 647 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE--ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADH 724 (1208)
Q Consensus 647 ~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~E--a~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~ 724 (1208)
..+|..+..+|.+++.++..|++++.....+++.|.+.+...| ..+..++.++.+|++-|..++.....-. .+.+..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs-~ee~~~ 149 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVS-PEEKEK 149 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-HHHHHH
Confidence 4457777777777777777777777777777777777765544 5588889999999999999887555555 566666
Q ss_pred HHHHHHHHHHHHHHHH
Q 000960 725 IQNELEELVKILNDRC 740 (1208)
Q Consensus 725 in~kL~ELEKlL~E~r 740 (1208)
+..++..+.+....|+
T Consensus 150 ~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 150 LEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665555544443
No 210
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.81 E-value=0.37 Score=50.78 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhCcccCc
Q 000960 727 NELEELVKILNDRCKQYGLRAKP 749 (1208)
Q Consensus 727 ~kL~ELEKlL~E~rkq~GL~aK~ 749 (1208)
.+.+.+.+...+.+++.|+...|
T Consensus 119 ~~r~k~~~~~~~l~~~~~~~~~P 141 (177)
T PF13870_consen 119 KERDKLRKQNKKLRQQGGLLGVP 141 (177)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCc
Confidence 33334444444444455554443
No 211
>PRK10698 phage shock protein PspA; Provisional
Probab=95.77 E-value=0.85 Score=50.27 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 664 VELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQ 704 (1208)
Q Consensus 664 iQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLea 704 (1208)
+..|+.+|+....++..|+.+|..++..|.+++.|+..|-+
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444433
No 212
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.76 E-value=1.4 Score=48.07 Aligned_cols=65 Identities=23% Similarity=0.346 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1208)
Q Consensus 616 ~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLess 684 (1208)
..++.++.++++++..|.+--+.|...+. ++..+.+++..++.+-+.|+++|+...++..+|..+
T Consensus 65 ~~a~~e~~eL~k~L~~y~kdK~~L~~~k~----rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 65 KKAEEEVEELRKQLKNYEKDKQSLQNLKA----RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555544444444433 446667777777777777777777777777776655
No 213
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.012 Score=67.31 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC--CCCHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 000960 9 SDLFEAYFRRADLDGDGQISGAEAVAFFQGS--NLPKQVLAQVWSHADQRKAGFLNRAEFFNALK 71 (1208)
Q Consensus 9 ~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~S--gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM~ 71 (1208)
......+|.++|.++||.|+..|++.+++.+ ..-.....+-|...|.++||+|+.+||..++.
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 4567889999999999999999999999887 56667777888889999999999999987665
No 214
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.73 E-value=0.28 Score=62.03 Aligned_cols=17 Identities=12% Similarity=0.434 Sum_probs=8.3
Q ss_pred CCCCchhhHHHhhhhcH
Q 000960 579 KSKVPELEKHLMDQLSK 595 (1208)
Q Consensus 579 ks~~P~ldd~ll~q~s~ 595 (1208)
.+..|..-..+++.+..
T Consensus 235 ~~~dP~~Aa~ilN~la~ 251 (726)
T PRK09841 235 TGDDPQLITRILNSIAN 251 (726)
T ss_pred eCCCHHHHHHHHHHHHH
Confidence 34455555555544443
No 215
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.70 E-value=1 Score=49.39 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=22.5
Q ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000960 711 GESGDGTLQQHADHIQNELEELVKILNDRCKQYG 744 (1208)
Q Consensus 711 ~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq~G 744 (1208)
.++...+|.+.+++-..+.+||.|.+.+.+-++|
T Consensus 173 ~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 173 EEMKVQSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444466666667777777777777777776654
No 216
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.69 E-value=0.63 Score=60.47 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 000960 596 EEQESLNAKLKEAT 609 (1208)
Q Consensus 596 ee~~~l~~~~qEat 609 (1208)
+|-++|.+++..+-
T Consensus 411 ~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 411 EEIERLKRDLAAAR 424 (1041)
T ss_pred HHHHHHHHHHHHhH
Confidence 34556666665553
No 217
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.68 E-value=0.34 Score=57.89 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 000960 619 EKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLA-------KKYEEKYKQSGDVASKLTLEEAT 691 (1208)
Q Consensus 619 E~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr-------~EyEee~KQvseLessLA~~Ea~ 691 (1208)
+..|++++-.--+|.+|.+|||++..+-+- +-.+ |.+||+.|+.|- -|-.+..+.+..|+..|+.+...
T Consensus 330 q~~IqdLq~sN~yLe~kvkeLQ~k~~kQqv-fvDi---inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~ 405 (527)
T PF15066_consen 330 QNRIQDLQCSNLYLEKKVKELQMKITKQQV-FVDI---INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKH 405 (527)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHhhhhhH-HHHH---HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344566655555888888999888776543 3333 234666666531 11122336677888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcccHHH-HHHHHHH
Q 000960 692 FRDIQEKKMELYQAILKMEGESGDGTLQQ-HADHIQN 727 (1208)
Q Consensus 692 LqDiQ~Q~~eLeaAL~kl~~e~eda~LQE-r~~~in~ 727 (1208)
|+.-+..+.-|+-+|.++++.+ -.||| |+..||.
T Consensus 406 LqEsr~eKetLqlelkK~k~ny--v~LQEry~~eiQq 440 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANY--VHLQERYMTEIQQ 440 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhH--HHHHHHHHHHHHH
Confidence 8888888888888888888777 44444 5666663
No 218
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=0.57 Score=57.37 Aligned_cols=86 Identities=15% Similarity=0.245 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 000960 625 SREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE---ATFRDIQEKKME 701 (1208)
Q Consensus 625 sReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~E---a~LqDiQ~Q~~e 701 (1208)
+|++...++.-....+.+.....+........++.++-|+++.+.|||...++..+|..+|.... +.+.......++
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~ 343 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK 343 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33333333333344444555444444555555555555555555555555555555555554332 224444444455
Q ss_pred HHHHHHHHh
Q 000960 702 LYQAILKME 710 (1208)
Q Consensus 702 LeaAL~kl~ 710 (1208)
|...|.+|.
T Consensus 344 l~r~l~~i~ 352 (581)
T KOG0995|consen 344 LKRELNKIQ 352 (581)
T ss_pred HHHHHHHHH
Confidence 555555544
No 219
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.64 E-value=0.022 Score=74.25 Aligned_cols=72 Identities=19% Similarity=0.568 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HcCCC-------CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 000960 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRL-------PREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 502 (1208)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~f--lgs~L-------peeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI 502 (1208)
-++.+...+|.-+|+.||++++|+++..+++.+| +|..| ++.++..|++++|++.+|+|++.+|+. +||
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a--fmi 2323 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA--FMI 2323 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH--HHH
Confidence 4889999999999999999999999999999999 46555 345899999999999999999999986 344
Q ss_pred HHh
Q 000960 503 ERY 505 (1208)
Q Consensus 503 ~r~ 505 (1208)
.+-
T Consensus 2324 ~~E 2326 (2399)
T KOG0040|consen 2324 SKE 2326 (2399)
T ss_pred hcc
Confidence 433
No 220
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.63 E-value=0.012 Score=43.82 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q 000960 441 YTKVFVQVDIDRDGKITGEQAYNLF 465 (1208)
Q Consensus 441 y~eaF~~fDkD~DG~ISgdELr~~f 465 (1208)
++++|..+|+|+||+|+.+|++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3567777777777777777777653
No 221
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.56 E-value=0.58 Score=60.24 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=45.7
Q ss_pred HHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHH
Q 000960 641 LYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQ 720 (1208)
Q Consensus 641 lqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQE 720 (1208)
.-+.|+..+++.+.+++......++.|+.+..+..++|+.++..|...-+.++.+.++++++++.+.+...+. ..|+.
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~l--e~lk~ 332 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKL--ESLKK 332 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3344445555555555555555555555555555555655555555555556666666665555555433222 44444
Q ss_pred HHHHHHHHHHH
Q 000960 721 HADHIQNELEE 731 (1208)
Q Consensus 721 r~~~in~kL~E 731 (1208)
+.++.+..+..
T Consensus 333 ~~~~rq~~i~~ 343 (1072)
T KOG0979|consen 333 AAEKRQKRIEK 343 (1072)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 222
>PRK11519 tyrosine kinase; Provisional
Probab=95.56 E-value=0.43 Score=60.33 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=6.0
Q ss_pred ccccchhhhhh
Q 000960 779 DEGFTFVKELT 789 (1208)
Q Consensus 779 d~gf~~~~~~t 789 (1208)
|..+.-..|+.
T Consensus 450 d~~i~~~~~le 460 (719)
T PRK11519 450 NRGIESPQVLE 460 (719)
T ss_pred cCCcCCHHHHH
Confidence 55555555554
No 223
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.53 E-value=0.1 Score=61.33 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000960 687 LEEATFRDIQEKKMELYQA 705 (1208)
Q Consensus 687 ~~Ea~LqDiQ~Q~~eLeaA 705 (1208)
..|..|++||+...+|.+.
T Consensus 52 ~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 52 EKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333333
No 224
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.52 E-value=0.34 Score=60.55 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=85.1
Q ss_pred HHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHH-------HHHHHHHHHHHHHHH
Q 000960 609 TEADKKVEELEKEILT-SREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE-------LLAKKYEEKYKQSGD 680 (1208)
Q Consensus 609 tEa~KKl~elE~EI~k-sReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ-------~Lr~EyEee~KQvse 680 (1208)
+|.++++.+++.++.+ .+.+++.....+++|......|+.+|+.+..+|-....-.. .|..+|+....++..
T Consensus 35 ~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~ 114 (660)
T KOG4302|consen 35 TERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEG 114 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHH
Confidence 3455666666666533 34556666666777777777777777777665544333222 366666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCcccHHHHHHHHHHHHHHH--------------HHHHHHH
Q 000960 681 VASKLTLEEATFRDIQEKKMELYQAILKM-------EGESGDGTLQQHADHIQNELEEL--------------VKILNDR 739 (1208)
Q Consensus 681 LessLA~~Ea~LqDiQ~Q~~eLeaAL~kl-------~~e~eda~LQEr~~~in~kL~EL--------------EKlL~E~ 739 (1208)
|..+...-.+++.+++.|+++|-..|..- -.+..|.. -+++++++.+|.+| +..+...
T Consensus 115 lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dls-l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l 193 (660)
T KOG4302|consen 115 LRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLS-LEKLEELREHLNELQKEKSDRLEKVLELKEEIKSL 193 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677777777777777766531 11222222 14444444444433 3677788
Q ss_pred HHhhCcccCccc
Q 000960 740 CKQYGLRAKPTL 751 (1208)
Q Consensus 740 rkq~GL~aK~~~ 751 (1208)
|..+|+.+..+.
T Consensus 194 ~~~Lg~~~~~~v 205 (660)
T KOG4302|consen 194 CSVLGLDFSMTV 205 (660)
T ss_pred HHHhCCCcccch
Confidence 889998876443
No 225
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.50 E-value=0.0062 Score=60.21 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHH
Q 000960 436 SEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCT 497 (1208)
Q Consensus 436 eEk~ey~eaF~~fDkD~DG~ISgdELr~~flgs~LpeeeL~qIW~LaD~D~DGkLdfdEFvv 497 (1208)
..+..+.=.|..+|+|+||+|+..||+.+..-....+.=+...++.+|.|+||.|++.|++.
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34556666799999999999999999988754455566689999999999999999999974
No 226
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=95.49 E-value=1.8 Score=45.39 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=51.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea 690 (1208)
+++|.-+....++...-.++...+++.++..... -+ .-=.++|+..+|++||...+++..|-..+.-.|.
T Consensus 43 IErkKmeVrekVq~~LgrveEetkrLa~ireeLE-------~l---~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEk 112 (159)
T PF04949_consen 43 IERKKMEVREKVQAQLGRVEEETKRLAEIREELE-------VL---ADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEK 112 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------hh---ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555554444444444444444332211 11 1125778888999999999998888888777777
Q ss_pred HHHHHHHHHHHHHH
Q 000960 691 TFRDIQEKKMELYQ 704 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLea 704 (1208)
.++++++.+++...
T Consensus 113 Eykealea~nEknk 126 (159)
T PF04949_consen 113 EYKEALEAFNEKNK 126 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777765543
No 227
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.46 E-value=0.29 Score=60.08 Aligned_cols=65 Identities=11% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccc-CcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 677 QSGDVASKLTLEEA-------TFRDIQEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEELVKILNDRCK 741 (1208)
Q Consensus 677 QvseLessLA~~Ea-------~LqDiQ~Q~~eLeaAL~kl~~e~-eda~LQEr~~~in~kL~ELEKlL~E~rk 741 (1208)
.+.+|+++|..++. .+.++...+.++++.|..+.... .-..|++++..+..++.++-+.|+..|+
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544433 35566666666666666655322 2355566666666555555444444443
No 228
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.45 E-value=0.38 Score=59.54 Aligned_cols=137 Identities=18% Similarity=0.102 Sum_probs=68.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQ----ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQ----ELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA 686 (1208)
..+.+..+|+.++-+-++.+-++.++. ||....- .++|.+..+.|.+|-.|=+.|-+++=.+-..|+.|-.++.
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~--~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKELAAALL--KDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 345555556555555555555555554 2332222 2567777777777777776666665555555555544433
Q ss_pred HH-----------------HHHHHHHHHHHHHHHHHHH----HHh-----cccCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 687 LE-----------------EATFRDIQEKKMELYQAIL----KME-----GESGDGTLQQHADHIQNELEELVKILNDRC 740 (1208)
Q Consensus 687 ~~-----------------Ea~LqDiQ~Q~~eLeaAL~----kl~-----~e~eda~LQEr~~~in~kL~ELEKlL~E~r 740 (1208)
.. +..|+.+..-+.+++..++ ++. .+..+.+++.++..++.++.-++..+.+++
T Consensus 485 e~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~ 564 (961)
T KOG4673|consen 485 EAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEAR 564 (961)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 22 2223333333333322222 111 222335566666666666665555555555
Q ss_pred H--hhCcccCc
Q 000960 741 K--QYGLRAKP 749 (1208)
Q Consensus 741 k--q~GL~aK~ 749 (1208)
+ |+-..+|+
T Consensus 565 ~Dlqk~nrlkQ 575 (961)
T KOG4673|consen 565 SDLQKENRLKQ 575 (961)
T ss_pred hhHHHHhhhhh
Confidence 5 34444453
No 229
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.44 E-value=0.34 Score=60.53 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~ 688 (1208)
..++.+.++|...++++..+.+.|-+........+..-..+++++..++-.++.||+++++..+++.+|..+|+.+
T Consensus 61 ~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l 136 (660)
T KOG4302|consen 61 ESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKL 136 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666555555554443333322233347889999999999999999999999999999887665
No 230
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.40 E-value=0.48 Score=59.46 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 678 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQv 678 (1208)
+-++.+.+.+|-.++++...+..+.|.|+...++.+++|++.+.||..++.+++.|.+++--+...|
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence 3445566667777777777777777888888888888888888888888888877777665554433
No 231
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.40 E-value=0.4 Score=61.05 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 635 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 635 KmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
+++.+..+....+..|.+++.++..++..-..++.+++.+......|+.++.++|+.+..++.++..|+..|.+
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455555555555555555556666666666666666666666666677777766666665
No 232
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.37 E-value=0.4 Score=62.59 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000960 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG 711 (1208)
Q Consensus 632 yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~ 711 (1208)
|-.++|++.-.....++.|..+.+....+-.+...|+.+.+....+..++...++++++++..+++.+..+...|.++++
T Consensus 572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 33333333333333333333333333344444444555555555555555555555555555555555555555555443
No 233
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=0.72 Score=59.76 Aligned_cols=147 Identities=20% Similarity=0.291 Sum_probs=96.0
Q ss_pred hhHHHhhhhcHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 000960 585 LEKHLMDQLSKEEQESLNAKLKEA-------TEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERV 657 (1208)
Q Consensus 585 ldd~ll~q~s~ee~~~l~~~~qEa-------tEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eel 657 (1208)
.|++-+.++.. .+++|+.++++. .+++.++.-++..|.-++-+++..+..+.+.++..+++.+++++..-+|
T Consensus 649 wdek~~~~L~~-~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i 727 (1141)
T KOG0018|consen 649 WDEKEVDQLKE-KKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEI 727 (1141)
T ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchH
Confidence 45544444433 355555544433 3455666666777777777777777888888888899999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH-HHHHHHHHHHHHHhccc---CcccHHH
Q 000960 658 SGDKREVELLAKKYEEKYKQSGDVASKLTL-------------EEATFRDIQ-EKKMELYQAILKMEGES---GDGTLQQ 720 (1208)
Q Consensus 658 SelKREiQ~Lr~EyEee~KQvseLessLA~-------------~Ea~LqDiQ-~Q~~eLeaAL~kl~~e~---eda~LQE 720 (1208)
++++|+++..+.+.++-.+++++|+.+|=. .|.++++-+ .+..+++.++++++-+. .+..++.
T Consensus 728 ~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~ 807 (1141)
T KOG0018|consen 728 SEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQR 807 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHH
Confidence 999999999999999988999999987411 133332222 23455666666544222 1245566
Q ss_pred HHHHHHHHHHHH
Q 000960 721 HADHIQNELEEL 732 (1208)
Q Consensus 721 r~~~in~kL~EL 732 (1208)
|.+.+...+..+
T Consensus 808 ~ve~~~~~v~~~ 819 (1141)
T KOG0018|consen 808 RVERWERSVEDL 819 (1141)
T ss_pred HHHHHHHHHHHH
Confidence 666666555544
No 234
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.34 E-value=0.29 Score=54.31 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHh-hCccc
Q 000960 691 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ-YGLRA 747 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq-~GL~a 747 (1208)
.|++|..-|+.|++.|...+.+. ...++.+.++..+|..|.-..++.|+. .||.-
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er--~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESER--NKRQEKIQRLYEEYKPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 56666666666666666544333 223444444444555555555666665 66653
No 235
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=1.3 Score=54.08 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=14.8
Q ss_pred hhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 000960 645 RCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1208)
Q Consensus 645 R~~neLnel~eelSelKREiQ~Lr~EyEee 674 (1208)
..+++|+.++.+++..+.|.++|.++....
T Consensus 111 eleneLKq~r~el~~~q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 111 ELENELKQLRQELTNVQEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555444433
No 236
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.31 E-value=0.47 Score=56.63 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHHh
Q 000960 432 KMTHSEVQKYTKVFVQV 448 (1208)
Q Consensus 432 ~LS~eEk~ey~eaF~~f 448 (1208)
.|+..|.-.|-..|...
T Consensus 85 ~mt~~Dll~F~~~~~~~ 101 (493)
T KOG0804|consen 85 YMTSHDLLRFCASFIKQ 101 (493)
T ss_pred cccHHHHHHHHHHHhhh
Confidence 47777777766666543
No 237
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.28 E-value=0.79 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 718 LQQHADHIQNELEELVKILNDRCK 741 (1208)
Q Consensus 718 LQEr~~~in~kL~ELEKlL~E~rk 741 (1208)
+..|+..++..+..|..+++++|.
T Consensus 190 ~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 190 LKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555665555
No 238
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.22 E-value=1.2 Score=60.42 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=13.2
Q ss_pred CCcCHHHHHHHHHHHHHhh
Q 000960 488 GMLSLKEFCTALYLMERYR 506 (1208)
Q Consensus 488 GkLdfdEFvvAM~LI~r~l 506 (1208)
|.++.+.|...|+++.+.+
T Consensus 175 G~~~~~ry~~l~~~l~~lr 193 (1353)
T TIGR02680 175 GFLGEERYAALLDLLIQLR 193 (1353)
T ss_pred CCCChHHHHHHHHHHHHHc
Confidence 6677788987777665443
No 239
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.21 E-value=0.99 Score=58.19 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee 674 (1208)
.|.-+++++-.++..|++-+..+++++..++..|++.-+.+..|..++..++..++.-|+.+
T Consensus 401 SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 401 SKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44445555556666777777777777777777777777777777777766666544444443
No 240
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.19 E-value=0.73 Score=47.33 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 660 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 660 lKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
++..+++|+.++++....+..++.+...++..++.++.++....+.+++
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444443
No 241
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.19 E-value=3.2 Score=45.50 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=27.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAI 706 (1208)
Q Consensus 659 elKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL 706 (1208)
.....++.|+.+|+....+|..|+.+|..+|..+.+++.+...|.+-.
T Consensus 96 ~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 96 KAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456666666666666666666666666666666655444433
No 242
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=95.16 E-value=0.46 Score=61.14 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHhccc--CcccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCccc
Q 000960 685 LTLEEATFRDIQEKKM-----ELYQAILKMEGES--GDGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTL 751 (1208)
Q Consensus 685 LA~~Ea~LqDiQ~Q~~-----eLeaAL~kl~~e~--eda~LQEr~~~in~kL~ELEKlL~E~rkq~GL~aK~~~ 751 (1208)
|+.+|.+|+-+++++- ++-.++..|+-+. -...++..+.-++-.|+++|.+++|+.|++|-+--+..
T Consensus 1162 IEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGaSkePLD 1235 (1439)
T PF12252_consen 1162 IEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLD 1235 (1439)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccc
Confidence 3344555666655532 2223333444211 12467889999999999999999999999997665543
No 243
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.15 E-value=1.3 Score=49.08 Aligned_cols=57 Identities=9% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHH
Q 000960 610 EADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL 666 (1208)
Q Consensus 610 Ea~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~ 666 (1208)
+.++++.+...+..++.++++.+..+++.|+.|..+.+..+....+++.+++++++.
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554444444444444444444333
No 244
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.14 E-value=0.46 Score=56.26 Aligned_cols=89 Identities=19% Similarity=0.109 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~L 692 (1208)
|+...+..|...++.+.+....+||++++. |+++++|..+++.+.=+++.+++-..+++..++..-.-.-.++
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~-------l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~ei 99 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELE-------LNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEI 99 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555666666665554 4555555555555444444444333333333222211112335
Q ss_pred HHHHHHHHHHHHHHHH
Q 000960 693 RDIQEKKMELYQAILK 708 (1208)
Q Consensus 693 qDiQ~Q~~eLeaAL~k 708 (1208)
+.+++|..+.+.+...
T Consensus 100 r~~~~q~~e~~n~~~~ 115 (459)
T KOG0288|consen 100 RELREQKAEFENAELA 115 (459)
T ss_pred HHHHHhhhhhccchhh
Confidence 5555555555555444
No 245
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.14 E-value=0.57 Score=53.75 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=21.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 651 NEITERVSGDKREVELLAKKYEEKY---KQSGDVASKLTLEEATFRDIQEKKMELYQ 704 (1208)
Q Consensus 651 nel~eelSelKREiQ~Lr~EyEee~---KQvseLessLA~~Ea~LqDiQ~Q~~eLea 704 (1208)
...+.++...++++++.+.-+++.. .++.+.+.++..++++++.++.++..++.
T Consensus 124 ~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~ 180 (346)
T PRK10476 124 ERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAA 180 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333221 22233333344444444444444444433
No 246
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.11 E-value=0.026 Score=43.22 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=20.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHh
Q 000960 12 FEAYFRRADLDGDGQISGAEAVAFFQG 38 (1208)
Q Consensus 12 Y~~vF~~~D~D~DGkIsg~Ea~~fL~~ 38 (1208)
|+++|+.+|.|+||+|+.+|++.+|.+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 677788888888888888888877763
No 247
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.11 E-value=0.85 Score=50.57 Aligned_cols=116 Identities=13% Similarity=0.162 Sum_probs=60.2
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHH
Q 000960 590 MDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK 669 (1208)
Q Consensus 590 l~q~s~ee~~~l~~~~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~ 669 (1208)
+.|...+-+..|..-.+....+-.....++.++.+.+..++.|+.+.+... .+++ ++-.++.-+++..+...+..+++
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al-~~g~-E~LAr~al~~~~~le~~~~~~~~ 106 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL-QAGN-EDLAREALEEKQSLEDLAKALEA 106 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333332222233333444556667777777775555543322 1121 22234444555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 670 KYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 670 EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
+|.+...++..|..+|..+|..+.++..++..|.+...
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666665555544
No 248
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.11 E-value=1.2 Score=54.07 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc--cCcccHHHHHHHHH
Q 000960 691 TFRDIQEKKMELYQAILKMEGE--SGDGTLQQHADHIQ 726 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~kl~~e--~eda~LQEr~~~in 726 (1208)
-|+=+++++...+..+.++... .+...|++.|+.|.
T Consensus 141 ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~ 178 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQ 178 (475)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544411 12355555555544
No 249
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=95.11 E-value=0.67 Score=53.68 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 000960 692 FRDIQEKKMELYQAIL 707 (1208)
Q Consensus 692 LqDiQ~Q~~eLeaAL~ 707 (1208)
++.++.|+.+|++.|.
T Consensus 244 v~~l~~~i~~l~~~i~ 259 (362)
T TIGR01010 244 VPSLQARIKSLRKQID 259 (362)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 250
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.11 E-value=0.84 Score=54.78 Aligned_cols=138 Identities=13% Similarity=0.172 Sum_probs=57.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 605 LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1208)
Q Consensus 605 ~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLess 684 (1208)
.+||.+++.++..++..--.++.+...|+.-+..+..+++.--+.|..+..+|.....||+.|+.++++-++|+...-=.
T Consensus 287 i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is 366 (622)
T COG5185 287 IQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIS 366 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCC
Confidence 33444444444444333333333333333333333333333333444444444444444444544444444444321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHHHHHHH---HHHHHhhCcc
Q 000960 685 LTLEEATFRDIQEKKMELYQAILKMEGESGD--GTLQQHADHIQNELEELVKIL---NDRCKQYGLR 746 (1208)
Q Consensus 685 LA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ed--a~LQEr~~~in~kL~ELEKlL---~E~rkq~GL~ 746 (1208)
+.. +...-....+|-..|.+|.-+.+- ....++-+++|.-++.|||++ ...++..|++
T Consensus 367 ~e~----fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~ 429 (622)
T COG5185 367 TEQ----FELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRS 429 (622)
T ss_pred HHH----HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111 111111122244444443322211 334556666666666776554 3456666666
No 251
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=95.09 E-value=1.1 Score=50.85 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 634 TKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 634 sKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
...++|-.+=..+++.|..+..++.-|--|+-.|+..|-+.+-+....=+.|.+.|..|+.++.++..|...|.+++
T Consensus 82 ~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk 158 (271)
T PF13805_consen 82 AAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLK 158 (271)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Confidence 34456777888889999999999999999999999999998888888888888899999999999999999998887
No 252
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.06 E-value=0.59 Score=52.23 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000960 689 EATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 689 Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
+..+..++..+..|..+..+
T Consensus 81 e~e~~e~~~~i~~l~ee~~~ 100 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESER 100 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544
No 253
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.05 E-value=0.71 Score=51.54 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLes 683 (1208)
.++..++.++.++..+++.+..|.+..........+...++..+...|...|+.|...|.+-..++..+..
T Consensus 45 ~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 45 QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 56777777788888888888888888777777777778888888888888888888888888877766655
No 254
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.03 E-value=1.1 Score=47.30 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKK 699 (1208)
Q Consensus 620 ~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~ 699 (1208)
-+...+.++|+.-...+..|.......-+.|..+++.+..+..+.+.|+.+|.....++..+...|..++.....++.++
T Consensus 49 ien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~ 128 (177)
T PF13870_consen 49 IENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQN 128 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666555555555555555556666666666666666666666666666655555555544444444444444
Q ss_pred HHH
Q 000960 700 MEL 702 (1208)
Q Consensus 700 ~eL 702 (1208)
..|
T Consensus 129 ~~l 131 (177)
T PF13870_consen 129 KKL 131 (177)
T ss_pred HHH
Confidence 433
No 255
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.02 E-value=0.61 Score=58.28 Aligned_cols=181 Identities=22% Similarity=0.320 Sum_probs=91.8
Q ss_pred hhhcHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHH
Q 000960 591 DQLSKEEQESLNAKLK-EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK 669 (1208)
Q Consensus 591 ~q~s~ee~~~l~~~~q-EatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~ 669 (1208)
+++.+|+++.+-..+. |++.+..|+..++.|...-++....++..+.+ -.+.--..|....+.+...||.++.-+.
T Consensus 293 ~~iK~E~~~~~v~~~t~E~tQ~~~~ve~~~~e~~~A~~~~T~~~~~vk~---~~G~~~~~LsA~~E~~~~~r~~~~~~~~ 369 (1104)
T COG4913 293 NRIKKEEQETLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQ---IVGAQHGILSAKREGAVDKRRTISTARA 369 (1104)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566666665433332 33333344443333332222222233322222 2222223455556677777888888888
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHh-cccCcccHHHHH-----------HHHH---HHHH-
Q 000960 670 KYEEKYKQSGDVA--SKLTLEEATFRDIQEK-KMELYQAILKME-GESGDGTLQQHA-----------DHIQ---NELE- 730 (1208)
Q Consensus 670 EyEee~KQvseLe--ssLA~~Ea~LqDiQ~Q-~~eLeaAL~kl~-~e~eda~LQEr~-----------~~in---~kL~- 730 (1208)
-|+.-.|.+.+-. +.+..+| +++.-.+ -.|+-+|+.+|+ ++.++-.=..++ .-++ ..++
T Consensus 370 ~~~aLv~~l~~aAP~~A~~~L~--~~~~~~~~~dE~~AA~E~L~~~~~~~~~~~~~A~d~~~a~~~El~SL~k~~SNI~~ 447 (1104)
T COG4913 370 GLDALVKGLGGAAPESAEELLE--LNNAARLTVDEYPAAREALESAGQRNVEDRTRAVDEFKAADQELSSLSKGSSNIEY 447 (1104)
T ss_pred HHHHHHHhccCCCcccHHHHHH--HHHHHHHhHhhhHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 8887777664432 2222222 2222222 345666666666 444331101111 1111 1122
Q ss_pred HHHHHHHHHHHhhCcccCcccccccccCcccCcccccchhccchhcccccccc
Q 000960 731 ELVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDEDWDKLEDEGFT 783 (1208)
Q Consensus 731 ELEKlL~E~rkq~GL~aK~~~~vElp~g~~~~~qe~a~~w~edw~~~~d~gf~ 783 (1208)
.|-+.++..|+-+|+++. .|||+=+ -||-++++|.---..+ =-||.
T Consensus 448 ~~l~vR~~LC~~L~v~~~-----~mPFAGE-LI~~~~~~WE~~~qRi-L~GF~ 493 (1104)
T COG4913 448 RLLQVRENLCQDLGVSPR-----DMPFAGE-LIDPNNAEWEPVVQRI-LGGFA 493 (1104)
T ss_pred HHHHHHHHHHHHcCCChh-----hCCcccc-ccCCCcccchHHHHHH-hhhch
Confidence 233788999999999875 5899877 7888999997533344 45665
No 256
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.01 E-value=0.85 Score=45.43 Aligned_cols=23 Identities=9% Similarity=0.247 Sum_probs=10.1
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHH
Q 000960 651 NEITERVSGDKREVELLAKKYEE 673 (1208)
Q Consensus 651 nel~eelSelKREiQ~Lr~EyEe 673 (1208)
....++|.+|+++|..+++.++.
T Consensus 54 ~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 54 ASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 257
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.86 Score=57.65 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 672 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyE 672 (1208)
+...+.|..+|-.+.-+++.++.+..+|+.....++.++.....+.+++++++..|+.++.
T Consensus 656 ~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 656 DDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444445555555556666666666666666666667777777777777777777766
No 258
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=94.98 E-value=0.57 Score=53.95 Aligned_cols=31 Identities=3% Similarity=0.184 Sum_probs=14.8
Q ss_pred HHHHhhhhhhHHHHHHhhhcHHHHHHHHHHH
Q 000960 641 LYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (1208)
Q Consensus 641 lqksR~~neLnel~eelSelKREiQ~Lr~Ey 671 (1208)
..+.++.+.|.+.+..|.+++++|+.|+.+|
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555444444
No 259
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.98 E-value=1.8 Score=48.87 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHH
Q 000960 678 SGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEE 731 (1208)
Q Consensus 678 vseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~E 731 (1208)
|.+|+-.||+.+..-..++.+..+|++-++.|..+- .-.|+.|.-+|.+|++
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedV--EgmqsTiliLQq~Lke 289 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDV--EGMQSTILILQQKLKE 289 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH--hcchhhHHHHHHHHHH
Confidence 455666666666555566666666666666654222 1125556666666653
No 260
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.92 E-value=0.23 Score=54.18 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 000960 613 KKVEELEKEILT 624 (1208)
Q Consensus 613 KKl~elE~EI~k 624 (1208)
++++++++++.+
T Consensus 100 ~el~~l~~~l~~ 111 (206)
T PRK10884 100 NQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 261
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.90 E-value=3.5 Score=44.96 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000960 591 DQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFC 632 (1208)
Q Consensus 591 ~q~s~ee~~~l~~~~qEatEa~KKl~elE~EI~ksReKiE~y 632 (1208)
++.-.+|-.+|+.....++|...++. .+|.+++.++...
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~---~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLA---EEITDLRKQLKSL 55 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34445666677666655555555543 4555555554433
No 262
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.86 E-value=0.29 Score=53.43 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCS 633 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yr 633 (1208)
.++.++++|+++++++++..+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666665555433
No 263
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.84 E-value=2.6 Score=46.54 Aligned_cols=60 Identities=12% Similarity=0.310 Sum_probs=29.3
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (1208)
Q Consensus 650 Lnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl 709 (1208)
+.++..+|......+..++..+.+...++.+++.....+-.++.+++.++.++...|...
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~ 139 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNL 139 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444444444444444444444444444444555555555555555544
No 264
>PRK12705 hypothetical protein; Provisional
Probab=94.84 E-value=2.9 Score=51.43 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCcc--c-CcccccccccCcccCcc
Q 000960 734 KILNDRCKQYGLR--A-KPTLLVELPFGWQPGIQ 764 (1208)
Q Consensus 734 KlL~E~rkq~GL~--a-K~~~~vElp~g~~~~~q 764 (1208)
+.+..+.|+|.-. + +-...|.||--|..|.=
T Consensus 180 ~ii~~aiqr~a~~~~~e~tvs~v~lp~demkGri 213 (508)
T PRK12705 180 NILAQAMQRIASETASDLSVSVVPIPSDAMKGRI 213 (508)
T ss_pred HHHHHHHHHhccchhhhheeeeeecCChHhhccc
Confidence 5666666766522 2 34468999988776643
No 265
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.71 Score=56.96 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=18.7
Q ss_pred HHHHHHHHhhCcccCcccccccccCc
Q 000960 734 KILNDRCKQYGLRAKPTLLVELPFGW 759 (1208)
Q Consensus 734 KlL~E~rkq~GL~aK~~~~vElp~g~ 759 (1208)
.++++++..||++.=-..+|+-|-|=
T Consensus 531 ~~Ie~~e~~~gik~GDvi~v~~~sG~ 556 (652)
T COG2433 531 EAIEEAEEEYGIKEGDVILVEDPSGG 556 (652)
T ss_pred HHHHhHHHhhccccCcEEEEEcCCCc
Confidence 45567777888877667788877763
No 266
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=94.80 E-value=0.81 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH
Q 000960 439 QKYTKVFVQVDIDRDGKITGEQAYNLF 465 (1208)
Q Consensus 439 ~ey~eaF~~fDkD~DG~ISgdELr~~f 465 (1208)
+.++.|-+.+|.|.+|-|..+|--.||
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFl 94 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFL 94 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHH
Confidence 567788889999999999999987777
No 267
>PRK10869 recombination and repair protein; Provisional
Probab=94.78 E-value=0.53 Score=58.02 Aligned_cols=98 Identities=8% Similarity=0.175 Sum_probs=44.1
Q ss_pred hhhhhhHHHHHHhhhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 000960 645 RCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQSGDVASKLTLEE-------ATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 645 R~~neLnel~eelSelKREiQ~Lr~EyEee~-------KQvseLessLA~~E-------a~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
+.+.+|.++.+++.+..-+++.+..++.... ..+.+++++|..+. ..+.+|-+.+.++++.|..+.
T Consensus 258 ~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 258 GMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred hhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555555444443322 22344444433321 013344444445555555554
Q ss_pred ccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 711 GES-GDGTLQQHADHIQNELEELVKILNDRCKQ 742 (1208)
Q Consensus 711 ~e~-eda~LQEr~~~in~kL~ELEKlL~E~rkq 742 (1208)
+-. .-+.|++++..+..+|.++-+.|+++|++
T Consensus 338 ~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 338 DQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22445555555555555444445544443
No 268
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.77 E-value=1.3 Score=58.24 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=15.0
Q ss_pred cccHHHHHHHHHhCC-CCHH
Q 000960 26 QISGAEAVAFFQGSN-LPKQ 44 (1208)
Q Consensus 26 kIsg~Ea~~fL~~Sg-LP~~ 44 (1208)
++-|.+++.+|.+.+ ||..
T Consensus 156 Y~pGGDlltLlSk~~~~pE~ 175 (1317)
T KOG0612|consen 156 YMPGGDLLTLLSKFDRLPED 175 (1317)
T ss_pred cccCchHHHHHhhcCCChHH
Confidence 567788999999988 7764
No 269
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.74 E-value=0.76 Score=58.27 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000960 692 FRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 692 LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
++.++.|+.+|++.+.+++
T Consensus 341 v~~l~~~~~~L~~~~~~l~ 359 (726)
T PRK09841 341 YRALLEKRQTLEQERKRLN 359 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544
No 270
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.72 E-value=0.83 Score=52.67 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (1208)
Q Consensus 629 iE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~E 689 (1208)
+..-..+|-.|.....+..++...-.++|+.|..+|-.|++++.+-.....+|...|..+.
T Consensus 208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444444444555556666666666666665555555555555555543
No 271
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=94.72 E-value=1.2 Score=54.83 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000960 721 HADHIQNELEELVKILND 738 (1208)
Q Consensus 721 r~~~in~kL~ELEKlL~E 738 (1208)
++..++.+|+.|++++..
T Consensus 379 ~l~~~~~~~~~le~~~~~ 396 (582)
T PF09731_consen 379 KLAELNSRLKALEEALDA 396 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 272
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.67 E-value=0.77 Score=56.74 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhCcccCcccccccccC
Q 000960 731 ELVKILNDRCKQYGLRAKPTLLVELPFG 758 (1208)
Q Consensus 731 ELEKlL~E~rkq~GL~aK~~~~vElp~g 758 (1208)
+|++.|+.+..|--++.+-+++-++=||
T Consensus 335 el~~kL~~~sDYeeIK~ELsiLk~ief~ 362 (629)
T KOG0963|consen 335 ELKEKLNSRSDYEEIKKELSILKAIEFG 362 (629)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHhhcC
Confidence 3334444444344444444445555554
No 273
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.66 E-value=1.3 Score=53.21 Aligned_cols=8 Identities=25% Similarity=0.617 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000960 726 QNELEELV 733 (1208)
Q Consensus 726 n~kL~ELE 733 (1208)
+.++++|+
T Consensus 242 ~~~i~~l~ 249 (457)
T TIGR01000 242 QQQIDQLQ 249 (457)
T ss_pred HHHHHHHH
Confidence 33333333
No 274
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=0.06 Score=61.79 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHH--c-CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 000960 438 VQKYTKVFVQVDIDRDGKITGEQAYNLFL--S-WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 503 (1208)
Q Consensus 438 k~ey~eaF~~fDkD~DG~ISgdELr~~fl--g-s~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~ 503 (1208)
+.+=++.|+..|.|+||.++.+|+..||- . -.+..-+|++-+...|.|+||+|+++||+--|+-..
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 34556779999999999999999999982 2 245567788999999999999999999996554443
No 275
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.65 E-value=2.2 Score=54.80 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (1208)
Q Consensus 623 ~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eL 702 (1208)
..++.+++.++.++.+...........+..+.++++.++-||..|+-.|+.....|+.|+.+|..++..|++=..++..+
T Consensus 339 ~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~ 418 (775)
T PF10174_consen 339 EMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEE 418 (775)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333344444444445555555555555555555555555555555544444444444
Q ss_pred HHHHH
Q 000960 703 YQAIL 707 (1208)
Q Consensus 703 eaAL~ 707 (1208)
..-|.
T Consensus 419 k~Rl~ 423 (775)
T PF10174_consen 419 KERLS 423 (775)
T ss_pred HHHHh
Confidence 44443
No 276
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=94.65 E-value=0.036 Score=41.27 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=18.5
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHH
Q 000960 13 EAYFRRADLDGDGQISGAEAVAFF 36 (1208)
Q Consensus 13 ~~vF~~~D~D~DGkIsg~Ea~~fL 36 (1208)
+++|+.+|.|+||+|+.+|+++++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 567888888888888888887753
No 277
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=94.64 E-value=0.83 Score=44.99 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000960 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI 653 (1208)
Q Consensus 617 elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel 653 (1208)
++-.+++.++++++.+..+++.|.....++.--++++
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666666666554444443
No 278
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.64 E-value=1.3 Score=56.24 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHH
Q 000960 621 EILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 671 (1208)
Q Consensus 621 EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~Ey 671 (1208)
++.+-+.+.+.+....+++.......+.+-..++++|.+.|---.+|-+.|
T Consensus 49 ~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 49 ELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444444444444444444444444444444444444444443
No 279
>PF13514 AAA_27: AAA domain
Probab=94.63 E-value=1.2 Score=59.02 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000960 719 QQHADHIQNELEELVKILNDRCKQYG 744 (1208)
Q Consensus 719 QEr~~~in~kL~ELEKlL~E~rkq~G 744 (1208)
+..+..++.++.+++..+...++++|
T Consensus 302 ~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 302 RQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444555555566666667777
No 280
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.60 E-value=3.1 Score=48.47 Aligned_cols=82 Identities=10% Similarity=0.108 Sum_probs=49.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--ccHHHHHHHHHHH
Q 000960 651 NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD--GTLQQHADHIQNE 728 (1208)
Q Consensus 651 nel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ed--a~LQEr~~~in~k 728 (1208)
+.+..=+..++.|-+.|+.+++.-..++.+-++.-+.+..+|.+...-+++|.+.+++-=-+..+ ..=|+||-.+..|
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsK 209 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESK 209 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Confidence 33334445566666677777777777777666665666666777777777788777753322211 1125566666666
Q ss_pred HHHH
Q 000960 729 LEEL 732 (1208)
Q Consensus 729 L~EL 732 (1208)
..+|
T Consensus 210 VqDL 213 (401)
T PF06785_consen 210 VQDL 213 (401)
T ss_pred HHHH
Confidence 6655
No 281
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=94.59 E-value=0.86 Score=52.53 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=18.7
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 683 (1208)
Q Consensus 650 Lnel~eelSelKREiQ~Lr~EyEee~KQvseLes 683 (1208)
...+.+.|.++++.|+.|+.+|+...+++..++.
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666655555554443
No 282
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.59 E-value=2.5 Score=48.69 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=47.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----cc
Q 000960 657 VSGDKREVELLAKKYEEKYKQSGDVASKL--------------TLEEATFRDIQEKKMELYQAILKMEGESGD-----GT 717 (1208)
Q Consensus 657 lSelKREiQ~Lr~EyEee~KQvseLessL--------------A~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ed-----a~ 717 (1208)
++.+|...+.|.+++-.....++.|+..| ..+...|.++|-|+.+|+..++.-++.... ..
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes 218 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES 218 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44455555555555555555555554332 222344888888888888888743221111 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 718 LQQHADHIQNELEELVKILNDRCK 741 (1208)
Q Consensus 718 LQEr~~~in~kL~ELEKlL~E~rk 741 (1208)
|+||+.+++.+--=|..-|.++.+
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777665544455555444
No 283
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.58 E-value=0.62 Score=54.80 Aligned_cols=34 Identities=9% Similarity=0.182 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHH
Q 000960 631 FCSTKMQELILYKSRCDNRLNEITERVSGDKREV 664 (1208)
Q Consensus 631 ~yrsKmQELqlqksR~~neLnel~eelSelKREi 664 (1208)
-+|..+.++..++..+...+.+++..|..+..++
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i 250 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDI 250 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444444444444444444443333333333
No 284
>PRK12704 phosphodiesterase; Provisional
Probab=94.56 E-value=3.1 Score=51.31 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 000960 617 ELEKEILTSREKIQ 630 (1208)
Q Consensus 617 elE~EI~ksReKiE 630 (1208)
+.+.++.+.|++++
T Consensus 61 eaeeE~~~~R~Ele 74 (520)
T PRK12704 61 EAKEEIHKLRNEFE 74 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445555544
No 285
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.55 E-value=2.7 Score=52.86 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=6.2
Q ss_pred CCCCCCCchhhHHH
Q 000960 576 TPQKSKVPELEKHL 589 (1208)
Q Consensus 576 ~~~ks~~P~ldd~l 589 (1208)
.+..+..-.+++.+
T Consensus 58 ~~~~s~~~~~~~~l 71 (716)
T KOG4593|consen 58 ITSKSLLMQLEDEL 71 (716)
T ss_pred chhHHHHHHHHHHH
Confidence 33444444445433
No 286
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.54 E-value=5.4 Score=45.12 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=32.2
Q ss_pred HHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 643 KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1208)
Q Consensus 643 ksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~ 688 (1208)
|.+.++.-.+--+++++|++++-.+++.+|+..|-|.+|++.--++
T Consensus 79 Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 79 KEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3333444445566788888888888888888888888888764333
No 287
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=94.54 E-value=0.19 Score=58.31 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT 691 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~ 691 (1208)
.++..+++++.+++++....|..|++|+..-...|...++.-+.++.+++..++++++.... +-.+.+..+|..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~------e~~~~i~~L~~~ 76 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSA------EERELIEKLEED 76 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh------hHHHHHHHHHHH
Confidence 35566778888888888888999999999888888877777777777777777766543111 112334445555
Q ss_pred HHHHHHHHHHHHHHH
Q 000960 692 FRDIQEKKMELYQAI 706 (1208)
Q Consensus 692 LqDiQ~Q~~eLeaAL 706 (1208)
+++.+.++.++++-|
T Consensus 77 Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 77 IKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHhhHHHHHhhC
Confidence 666666777777554
No 288
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.52 E-value=1.2 Score=55.18 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 000960 622 ILTSREKIQ 630 (1208)
Q Consensus 622 I~ksReKiE 630 (1208)
+.+..++|+
T Consensus 280 ~~~i~~~Id 288 (560)
T PF06160_consen 280 NEEIEERID 288 (560)
T ss_pred HHHHHHHHH
Confidence 333333333
No 289
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.52 E-value=0.017 Score=57.21 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCHHHHHHHHHhccCCCCCCCCHHHHHH
Q 000960 7 TNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLPKQVLAQVWSHADQRKAGFLNRAEFFN 68 (1208)
Q Consensus 7 Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP~~~L~qIW~LAD~d~DG~LdrdEF~v 68 (1208)
+......=.|..+|.|+||.|+..|++.+...-.-+..-++...+.+|.|+||.|++.|++.
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34445555699999999999999999998776667777789999999999999999999974
No 290
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.51 E-value=1.6 Score=47.37 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=52.3
Q ss_pred HhHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQ-FCST----KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE-~yrs----KmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessL 685 (1208)
.++++.+++.++.+...++. -+.. ...+....+..|++.+..+.+++..+...++.|+..|.....++.+++.+.
T Consensus 56 le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 56 LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777776665 2222 233444556666666666666666666666666666666666666666665
Q ss_pred HHHHHHHHHHHH
Q 000960 686 TLEEATFRDIQE 697 (1208)
Q Consensus 686 A~~Ea~LqDiQ~ 697 (1208)
.++.++.+-++.
T Consensus 136 ~~l~ar~~~a~a 147 (221)
T PF04012_consen 136 EELKARENAAKA 147 (221)
T ss_pred HHHHHHHHHHHH
Confidence 555555443333
No 291
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.46 E-value=2.8 Score=45.39 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 000960 623 LTSREKI 629 (1208)
Q Consensus 623 ~ksReKi 629 (1208)
.+.|+++
T Consensus 63 ~~~r~~~ 69 (201)
T PF12072_consen 63 QKLRQEL 69 (201)
T ss_pred HHHHHHH
Confidence 3333333
No 292
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=94.46 E-value=0.75 Score=46.68 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRC 646 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~ 646 (1208)
.++.++..++..++++++.++.++.+|.....+.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666665555554444
No 293
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=94.44 E-value=0.67 Score=53.68 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELIL--YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELql--qksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~ 688 (1208)
+++++.++++++.+.++++..|+.+-.-+.. ......+.+.++..++.+++.++..|+..|.+.+=++..|+.+++.+
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l 254 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSL 254 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Confidence 3445555555555554444444444322211 11111222333344444444444444433333333444444444444
Q ss_pred HHHHHH
Q 000960 689 EATFRD 694 (1208)
Q Consensus 689 Ea~LqD 694 (1208)
+.++++
T Consensus 255 ~~~i~~ 260 (362)
T TIGR01010 255 RKQIDE 260 (362)
T ss_pred HHHHHH
Confidence 443333
No 294
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=1.3 Score=44.44 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHH-----HHHHHHHHH----HHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL-----LAKKYEEKY----KQSGDVAS 683 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~-----Lr~EyEee~----KQvseLes 683 (1208)
+|..++-+..++++++++.|-...|.|+++.++...-|+++. .+.....-... +++++++.. |.+.=+..
T Consensus 5 ~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eld-lle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~ 83 (120)
T KOG3478|consen 5 KKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELD-LLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISK 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHH
Confidence 555555555666777777777777777777776655555553 23333322221 555555544 44444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 684 KLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 684 sLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.|.-.|.+++|+|++..+...++.+++
T Consensus 84 Eikr~e~~i~d~q~e~~k~R~~v~k~Q 110 (120)
T KOG3478|consen 84 EIKRLENQIRDSQEEFEKQREAVIKLQ 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778889999999988888888866
No 295
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.37 E-value=0.87 Score=53.95 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=29.7
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHH------HHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 651 NEITERVSGDKREVELLAKKYEEKY------KQSGDV---ASKLT-LEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 651 nel~eelSelKREiQ~Lr~EyEee~------KQvseL---essLA-~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
|.+=+++.+|+.|-..|+++|++.. +.|... .-.-+ .+...++-||+.+.-|...|...+
T Consensus 204 N~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq 273 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ 273 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666777776654 112110 00011 112335555777766666666543
No 296
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.36 E-value=0.85 Score=55.70 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=48.3
Q ss_pred HhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHH---H-----------HHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQ----FCSTKMQELILYKSRCDNRLNEITERVSGDKR---E-----------VELLAKKYE 672 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE----~yrsKmQELqlqksR~~neLnel~eelSelKR---E-----------iQ~Lr~EyE 672 (1208)
|...+.++..++.+..++++ ..+..-+|+..|+.++.--|......|..||. . ++.|+.|.+
T Consensus 205 A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~ 284 (511)
T PF09787_consen 205 ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERD 284 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHH
Confidence 33445555555555555555 33344566777776666666666666666666 1 445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 673 EKYKQSGDVASKLTLEEATFRDIQEK 698 (1208)
Q Consensus 673 ee~KQvseLessLA~~Ea~LqDiQ~Q 698 (1208)
...-++..|+.+|...+.+++|++.+
T Consensus 285 ~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 285 HLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444444444443
No 297
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=1.2 Score=54.44 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 000960 597 EQESLNAKLKEATE 610 (1208)
Q Consensus 597 e~~~l~~~~qEatE 610 (1208)
|-++|..++.++++
T Consensus 16 eierLT~el~q~t~ 29 (772)
T KOG0999|consen 16 EIERLTEELEQTTE 29 (772)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555444444
No 298
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=94.34 E-value=1.9 Score=40.77 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 660 DKREVELLAKKYEEKYKQSGDVASKL 685 (1208)
Q Consensus 660 lKREiQ~Lr~EyEee~KQvseLessL 685 (1208)
...-+..|...+....+++..++..+
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~ 75 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEV 75 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333333
No 299
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.82 Score=55.29 Aligned_cols=88 Identities=18% Similarity=0.086 Sum_probs=56.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea 690 (1208)
+..++.+|++.-++.-.||+.+++|..+|....-|.--.+.-++.+=-.|+.+.|.||.+++...++++.= +...+
T Consensus 360 i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P----nq~k~ 435 (508)
T KOG3091|consen 360 IGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP----NQLKA 435 (508)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh----HHHHH
Confidence 44566666665566667788888888777765555544334444444467777788888888888777553 44556
Q ss_pred HHHHHHHHHHHH
Q 000960 691 TFRDIQEKKMEL 702 (1208)
Q Consensus 691 ~LqDiQ~Q~~eL 702 (1208)
+|..|.++++--
T Consensus 436 Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 436 RLDELYEILRMQ 447 (508)
T ss_pred HHHHHHHHHHhh
Confidence 666666665533
No 300
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.20 E-value=1.5 Score=54.00 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=49.7
Q ss_pred hhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHH
Q 000960 649 RLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE---EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHI 725 (1208)
Q Consensus 649 eLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~---Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~i 725 (1208)
+|+++.+|+..+++-...-...+++..+.+.+++.+|+.+ +..+.+++.++.++++.|.+ +-+.+..+
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~---------~a~~Ls~~ 372 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDK---------AAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 4555555555444433333333344444444555444443 33456666666666665554 23444455
Q ss_pred HHHHH-HHHHHHHHHHHhhCccc
Q 000960 726 QNELE-ELVKILNDRCKQYGLRA 747 (1208)
Q Consensus 726 n~kL~-ELEKlL~E~rkq~GL~a 747 (1208)
-.+.+ +|++..+..++.+|+..
T Consensus 373 R~~~a~~l~~~v~~~l~~L~m~~ 395 (563)
T TIGR00634 373 RRKAAERLAKRVEQELKALAMEK 395 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 45555 78899999999998863
No 301
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=94.19 E-value=3 Score=44.31 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=20.1
Q ss_pred hhhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 000960 648 NRLNEITERVSGDKREVELLAKKYEEKYKQS 678 (1208)
Q Consensus 648 neLnel~eelSelKREiQ~Lr~EyEee~KQv 678 (1208)
+++.+++.+...++++++.|++++.++..++
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777777766665444
No 302
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.16 E-value=2.8 Score=46.58 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Q 000960 637 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE------------------EATFRDIQEK 698 (1208)
Q Consensus 637 QELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~------------------Ea~LqDiQ~Q 698 (1208)
+.++.....++..+.+..+.+..+|+.+..|+.+|.+-.+++..|....+.+ ...|..++++
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~k 174 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEK 174 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 4444455555555555566666666666666666666665555555443333 2347777777
Q ss_pred HHHHHHHHHHHh
Q 000960 699 KMELYQAILKME 710 (1208)
Q Consensus 699 ~~eLeaAL~kl~ 710 (1208)
+.++++....+.
T Consensus 175 iee~ea~a~~~~ 186 (225)
T COG1842 175 IEEREARAEAAA 186 (225)
T ss_pred HHHHHHHHHHhH
Confidence 777777665443
No 303
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=94.12 E-value=1.2 Score=50.27 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=7.6
Q ss_pred hHHHHHHhhhcHHHHHHHH
Q 000960 650 LNEITERVSGDKREVELLA 668 (1208)
Q Consensus 650 Lnel~eelSelKREiQ~Lr 668 (1208)
+...+.++...+.++++.+
T Consensus 117 ~~~a~~~l~~a~~~~~r~~ 135 (334)
T TIGR00998 117 LEQAREKLLQAELDLRRRV 135 (334)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3333333334444444433
No 304
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.10 E-value=2.7 Score=46.19 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 000960 598 QESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 677 (1208)
Q Consensus 598 ~~~l~~~~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQ 677 (1208)
-.-|++-++|+ +..++.-..+|-.+|.++-..+.++.........+.+.+..... +++..+.+++.....
T Consensus 12 IsLLKqQLke~---q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~-------ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 12 ISLLKQQLKES---QAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQL-------ELEVCENELQRKKNE 81 (202)
T ss_pred HHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH-------hHHHhHHHHHHHhCH
Confidence 44455544333 34444444555555555555555555444444444433333333 333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHh---cccCcccHHHHHHHHHHHHHHH
Q 000960 678 SGDVASKLTLEEATFRDIQEKKMEL-----------YQAILKME---GESGDGTLQQHADHIQNELEEL 732 (1208)
Q Consensus 678 vseLessLA~~Ea~LqDiQ~Q~~eL-----------eaAL~kl~---~e~eda~LQEr~~~in~kL~EL 732 (1208)
+.-|..++..+|+.++.++..+..+ +...+++. +..+-..|+..++.+..+|..+
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~e 150 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRE 150 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443 11111111 1222355666677777666643
No 305
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.08 E-value=0.84 Score=54.52 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=59.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQF--CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~--yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~ 688 (1208)
|..++.+..+++.+.+++++. +-...|||..++.+..--+..- .....++.|++++|-+.+=....++.++.++..+
T Consensus 257 A~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~-~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~L 335 (554)
T KOG4677|consen 257 ALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSP-DKSTASRKEFEETRVELPFSAEDSAHIQDQYTLL 335 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCC-CcchhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 568888888999999999996 5566789998888765433332 2344556666666655554445555555555545
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000960 689 EATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 689 Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
+.+++||..|+..|+.++.
T Consensus 336 rs~~~d~EAq~r~l~s~~~ 354 (554)
T KOG4677|consen 336 RSQIIDIEAQDRHLESAGQ 354 (554)
T ss_pred HHHHHHHHHHHHhHHHHhH
Confidence 5555555555554444444
No 306
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.06 E-value=2.5 Score=54.21 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT 691 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~ 691 (1208)
+.++..+..++.+..++++.++.++.-+..-++..+.+|...++....+.-.+..++.|+++...++..|+..|......
T Consensus 616 ~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~ 695 (769)
T PF05911_consen 616 QDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERAL 695 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555555555555555555555555555555555555444555555556777777777777787777777677
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcc-----cH---HH-HHHHHHHHHHHHHHHHHHHHHhh
Q 000960 692 FRDIQEKKMELYQAILKMEGESGDG-----TL---QQ-HADHIQNELEELVKILNDRCKQY 743 (1208)
Q Consensus 692 LqDiQ~Q~~eLeaAL~kl~~e~eda-----~L---QE-r~~~in~kL~ELEKlL~E~rkq~ 743 (1208)
-.++-.+..+|+..|..+...-... .+ |+ .|...-.||+|=.|...=..||+
T Consensus 696 ~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQL 756 (769)
T PF05911_consen 696 SEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQL 756 (769)
T ss_pred chhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888766332111 11 12 23344455665555555555543
No 307
>PRK11519 tyrosine kinase; Provisional
Probab=94.05 E-value=0.91 Score=57.52 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCS 633 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yr 633 (1208)
++++.++++++.+..++++.|+
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 308
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.05 E-value=0.9 Score=57.79 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1208)
Q Consensus 636 mQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessL 685 (1208)
...|+.++.+.-++|.++.+++..++..-+.|+.+|++....-+.|.+++
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455666666666666666666666666555444444443
No 309
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=94.04 E-value=1.3 Score=56.01 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 623 LTSREKIQFCSTKMQELILYKSRCDNRL------NEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1208)
Q Consensus 623 ~ksReKiE~yrsKmQELqlqksR~~neL------nel~eelSelKREiQ~Lr~EyEee~KQvseLess 684 (1208)
.+++++++.+..++++|+...-+|..+- .+...+....+-+++.+.++++....++.+|++-
T Consensus 964 aE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eae 1031 (1424)
T KOG4572|consen 964 AEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAE 1031 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665554443211 1222222333444444444444444444444443
No 310
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.99 E-value=0.1 Score=63.51 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 000960 424 SQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 501 (1208)
Q Consensus 424 ~~~~~~Wp~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~fl--gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~L 501 (1208)
.+...+. +|+++++..|+..|..+|.|+.|+++.+++..+|. +-+.+++.+.++..++|.+.+|++...||...|.-
T Consensus 579 ~~~~~~i-~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 579 SQMSIPI-KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred ccccccc-ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 3445566 79999999999999999999999999999999994 45899999999999999999999999999866554
Q ss_pred HH
Q 000960 502 ME 503 (1208)
Q Consensus 502 I~ 503 (1208)
+.
T Consensus 658 ~~ 659 (680)
T KOG0042|consen 658 IK 659 (680)
T ss_pred Hh
Confidence 44
No 311
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.98 E-value=2.1 Score=46.90 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=60.8
Q ss_pred HhhhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHH
Q 000960 589 LMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLA 668 (1208)
Q Consensus 589 ll~q~s~ee~~~l~~~~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr 668 (1208)
|+.+--+|-+.-++.+..|.--.-..+.+...++.....++..++..+..-.+....|+++|.....++.-++..+..|.
T Consensus 14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le 93 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLE 93 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhH
Confidence 34444466677777766555433344555555554444444444444444444555566666555555545555444444
Q ss_pred HHHHHHHHHHHHH---HHH-----------HHH--HHHHHHHHHHHHHHHHHHHHHHhc
Q 000960 669 KKYEEKYKQSGDV---ASK-----------LTL--EEATFRDIQEKKMELYQAILKMEG 711 (1208)
Q Consensus 669 ~EyEee~KQvseL---ess-----------LA~--~Ea~LqDiQ~Q~~eLeaAL~kl~~ 711 (1208)
.++..-...+..+ ... ... .+..+..++.+...|.+.|...+.
T Consensus 94 ~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 94 AELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQ 152 (202)
T ss_pred HHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHH
Confidence 4444333333332 000 000 022355666777777777775443
No 312
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.93 E-value=6.4 Score=43.44 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHH
Q 000960 633 STKMQELILYKSRCDNRLNEITERVSGDKREVELLAK 669 (1208)
Q Consensus 633 rsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~ 669 (1208)
...++.+...+..+-.+|+.+....+.+=+..+.++.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~ 104 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKE 104 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333333333
No 313
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.91 E-value=1.2 Score=54.97 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 679 GDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 679 seLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
+.|...+..+..+|..|.+++.++...|..|+
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLR 406 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444
No 314
>PRK12705 hypothetical protein; Provisional
Probab=93.91 E-value=4.1 Score=50.20 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 000960 692 FRDIQEKKMELYQAILKMEGES 713 (1208)
Q Consensus 692 LqDiQ~Q~~eLeaAL~kl~~e~ 713 (1208)
.+++++++.++...|.++.+=.
T Consensus 118 ~~~~~~~~~~~~~~Le~ia~lt 139 (508)
T PRK12705 118 ELELEELEKQLDNELYRVAGLT 139 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 3333444455555555544333
No 315
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.90 E-value=0.91 Score=57.35 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHh---cccCcccHHHHHHHHHHHHH-HHHHHHHHHHHhhCcccCcccccccccC
Q 000960 695 IQEKKMELYQAILKME---GESGDGTLQQHADHIQNELE-ELVKILNDRCKQYGLRAKPTLLVELPFG 758 (1208)
Q Consensus 695 iQ~Q~~eLeaAL~kl~---~e~eda~LQEr~~~in~kL~-ELEKlL~E~rkq~GL~aK~~~~vElp~g 758 (1208)
+.+++.-+.+...++- ...-|..|++++..++.+++ ||+.++ +-.||..+.....|+..+
T Consensus 576 ~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~----~S~gL~~~~~~k~e~a~~ 639 (762)
T PLN03229 576 IKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVL----KSMGLEVIGVTKKNKDTA 639 (762)
T ss_pred HHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHH----hccCchhhhhhhhhhccc
Confidence 5555554445444422 33456889999999998887 776555 467788775556666654
No 316
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.88 E-value=0.86 Score=56.25 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000960 601 LNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRC 646 (1208)
Q Consensus 601 l~~~~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~ 646 (1208)
++...+.-..+.+++.+.+....+..+++|+++-+++||..-.=+.
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~ 204 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQP 204 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4555555566778888888888889999999999999988544333
No 317
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.88 E-value=3.1 Score=51.21 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=4.2
Q ss_pred Ccccccch
Q 000960 762 GIQEGTAD 769 (1208)
Q Consensus 762 ~~qe~a~~ 769 (1208)
+||--|.+
T Consensus 191 aiqr~a~~ 198 (514)
T TIGR03319 191 AIQRYAGD 198 (514)
T ss_pred HHHhccch
Confidence 55655543
No 318
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.84 E-value=3.2 Score=49.06 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 000960 666 LLAKKYEEKYKQSGDVASKLTL-------EEATFRDIQEKKMELYQAILKMEGESGD 715 (1208)
Q Consensus 666 ~Lr~EyEee~KQvseLessLA~-------~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ed 715 (1208)
.|.++|-+...++++++++... ....|++|.+++.+++..+..--..+.|
T Consensus 270 ~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD 326 (359)
T PF10498_consen 270 PLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTD 326 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3444444444444444444333 3444555555555555555542234444
No 319
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=93.80 E-value=0.87 Score=51.72 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 000960 601 LNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGD 680 (1208)
Q Consensus 601 l~~~~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvse 680 (1208)
|..+++|.. .+|.+-+.||.++|-|+. +||| .++.+..++.+. .-.|.+.|+||+.|++-+|.++.-+.+
T Consensus 73 LkakLkes~---~~l~dRetEI~eLksQL~----RMrE--DWIEEECHRVEA-QLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 73 LKAKLKESE---NRLHDRETEIDELKSQLA----RMRE--DWIEEECHRVEA-QLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHH---HHHHhhHHHHHHHHHHHH----HHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 444444433 555555666666655543 2333 233322333221 223446677777777777766633222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Q 000960 681 VASKLTLEEATFRDIQEKKMELYQAILKME-GES 713 (1208)
Q Consensus 681 LessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~-~e~ 713 (1208)
+=.-+..=|.||-.|-..||.-|+.|+ +++
T Consensus 143 ---kDkGiQKYFvDINiQN~KLEsLLqsMElAq~ 173 (305)
T PF15290_consen 143 ---KDKGIQKYFVDINIQNKKLESLLQSMELAQS 173 (305)
T ss_pred ---hhhhHHHHHhhhhhhHhHHHHHHHHHHHHHh
Confidence 111112237788777777888888777 554
No 320
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=93.75 E-value=2.8 Score=47.67 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 683 SKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 683 ssLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
++|.+.|..+++|++|+.+-+.+|..
T Consensus 400 eklk~e~qkikeleek~~eeedal~~ 425 (445)
T KOG2891|consen 400 EKLKAEEQKIKELEEKIKEEEDALLL 425 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666655555543
No 321
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=93.72 E-value=1.5 Score=50.06 Aligned_cols=53 Identities=9% Similarity=0.011 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 685 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1208)
Q Consensus 685 LA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rk 741 (1208)
+..++..++.++.++..+++.|..++.+. .++++..++.+++.++..+..++.
T Consensus 147 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~a~~ 199 (331)
T PRK03598 147 LENARSSRDQAQATLKSAQDKLSQYREGN----RPQDIAQAKASLAQAQAALAQAEL 199 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677777777776666654322 245666666777766544444444
No 322
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.72 E-value=0.74 Score=46.35 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 691 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 742 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq 742 (1208)
...++.+++.-++..|.. |......++.++.++++-|.++.++
T Consensus 72 ~~~~l~~r~E~ie~~ik~---------lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 72 VEKELKERKELLELRSRT---------LEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444443 2333334444444444444444443
No 323
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=93.71 E-value=4.4 Score=38.29 Aligned_cols=20 Identities=15% Similarity=0.224 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFC 632 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~y 632 (1208)
+++.+++.+|..+.+.++.|
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~ 31 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEY 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 324
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=93.71 E-value=4.8 Score=47.77 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE-~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessL 685 (1208)
.-+.+..+.+......++ -++.+..|.+.-+.+.+..|..+.++|..+.++|+.|++.|..+..-++=.+.+|
T Consensus 229 ~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL 302 (384)
T PF03148_consen 229 SILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRL 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444444555555566 7888888888888888888888888899999999988888888876655544443
No 325
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=93.70 E-value=1.5 Score=47.39 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cccCcccHHHHHHHHHHHHHHHH--HHHHHHHHhhCcccCcc
Q 000960 685 LTLEEATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELV--KILNDRCKQYGLRAKPT 750 (1208)
Q Consensus 685 LA~~Ea~LqDiQ~Q~~eLeaAL~kl~-~e~eda~LQEr~~~in~kL~ELE--KlL~E~rkq~GL~aK~~ 750 (1208)
.+..|+..++.|..++++.-.+..+- ++. -.|-|||-+--++.++|+ -+|.|-.|.+.+++..+
T Consensus 86 ~~~~e~~r~~fekekqq~~~~~t~~LwdeS--i~LAEkIV~QaiDtR~l~vlPiLt~viQ~LP~sFeKL 152 (228)
T PRK06800 86 MKEIEAARQQFQKEQQETAYEWTELLWDQS--FQLAEKIVNQAVDTRLLDVLPILTGIVQTLPTSFEKL 152 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHcchhHHHh
Confidence 34457777888888888888888777 666 567888888888888775 88999999998888433
No 326
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=93.68 E-value=3 Score=40.00 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 000960 695 IQEKKMELYQA 705 (1208)
Q Consensus 695 iQ~Q~~eLeaA 705 (1208)
|+.++..|+..
T Consensus 77 l~~q~~~l~~~ 87 (127)
T smart00502 77 LEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 327
>PRK00106 hypothetical protein; Provisional
Probab=93.67 E-value=4 Score=50.59 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=4.6
Q ss_pred Ccccccchh
Q 000960 762 GIQEGTADW 770 (1208)
Q Consensus 762 ~~qe~a~~w 770 (1208)
+||--|.+.
T Consensus 212 aiqr~a~~~ 220 (535)
T PRK00106 212 AMQRLAGEY 220 (535)
T ss_pred HHHHhcchh
Confidence 455555543
No 328
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=93.66 E-value=0.084 Score=61.89 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=17.7
Q ss_pred HHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 000960 641 LYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT----LEEATFRDIQEKKMELYQAILKMEGESGDG 716 (1208)
Q Consensus 641 lqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA----~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda 716 (1208)
....++..+|+++..++.+++.|++.+++.+.+....+..+..++. .+..++.++.+++.+|++.+..+.... .
T Consensus 91 e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~--~ 168 (370)
T PF02994_consen 91 EEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAI--K 168 (370)
T ss_dssp ---------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHH--H
Confidence 3444444455555555666666666666544444333333332221 122334444444444444443333211 1
Q ss_pred cHHHHHHHHHHHHHHHH
Q 000960 717 TLQQHADHIQNELEELV 733 (1208)
Q Consensus 717 ~LQEr~~~in~kL~ELE 733 (1208)
.+..++..+..+|++||
T Consensus 169 ~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 169 ELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23444444555555544
No 329
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=4.5 Score=51.30 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=32.4
Q ss_pred hhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000960 647 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES 713 (1208)
Q Consensus 647 ~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ 713 (1208)
..++..+.+++..+.-.+..|.+++......+..+...++++...+.++|.++...++.|..++.+.
T Consensus 523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~ 589 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQY 589 (698)
T ss_pred HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444443333333334444444555556667766666666666655444
No 330
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.64 E-value=1.9 Score=43.40 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI 653 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel 653 (1208)
.++.+.-.+++.+++++..+..+.+.|..+..+++.-++++
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666666666666666666666554444443
No 331
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=93.63 E-value=1.4 Score=53.05 Aligned_cols=11 Identities=9% Similarity=-0.124 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 000960 731 ELVKILNDRCK 741 (1208)
Q Consensus 731 ELEKlL~E~rk 741 (1208)
-||+++.|+.+
T Consensus 373 aLE~AR~EA~R 383 (434)
T PRK15178 373 TLQQGKLQALR 383 (434)
T ss_pred HHHHHHHHHHh
Confidence 44777777766
No 332
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=93.62 E-value=1.5 Score=55.36 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 000960 633 STKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1208)
Q Consensus 633 rsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee 674 (1208)
.++.|+++....-+--+|.+++.++.+..+++|.|.++|-++
T Consensus 994 aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQe 1035 (1424)
T KOG4572|consen 994 ARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQE 1035 (1424)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444455666666666666666666655443
No 333
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=93.62 E-value=2.3 Score=50.99 Aligned_cols=83 Identities=11% Similarity=0.202 Sum_probs=39.5
Q ss_pred hhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cccHHHHHHH
Q 000960 647 DNRLNEITERVSGDKREVELLAKKYEEKYKQS-GDVASKLTLEEATFRDIQEKKMELYQAILKMEGESG-DGTLQQHADH 724 (1208)
Q Consensus 647 ~neLnel~eelSelKREiQ~Lr~EyEee~KQv-seLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~e-da~LQEr~~~ 724 (1208)
..++.....++..++.+++.+++.+.++.+++ ..+... ++-++.|...|++.+.+++++.. ...++.++++
T Consensus 305 ~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~-------~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~ 377 (458)
T COG3206 305 STELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNE-------LALLEQQEAALEKELAQLKGRLSKLPKLQVQLRE 377 (458)
T ss_pred HHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhH-------HHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHH
Confidence 33344444455556666666666666555554 222222 33334444444444444442221 2344666666
Q ss_pred HHHHHHHHHHHH
Q 000960 725 IQNELEELVKIL 736 (1208)
Q Consensus 725 in~kL~ELEKlL 736 (1208)
|+.+++-.+.++
T Consensus 378 L~Re~~~~r~~y 389 (458)
T COG3206 378 LEREAEAARSLY 389 (458)
T ss_pred HHHHHHHHHHHH
Confidence 666666444333
No 334
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.59 E-value=4.4 Score=44.39 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 000960 618 LEKEILTSREKIQ 630 (1208)
Q Consensus 618 lE~EI~ksReKiE 630 (1208)
++.++...+.+++
T Consensus 57 ~e~~~~~~~~~~~ 69 (219)
T TIGR02977 57 LERRVSRLEAQVA 69 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 335
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.55 E-value=1.3 Score=57.43 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS-------GDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 636 mQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQv-------seLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
..+++.+....+.+|.-++-++.++|+.+..++.|++....++ .+++..|..-|.++++|+++++++++-+-+
T Consensus 678 ~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~ 757 (1141)
T KOG0018|consen 678 VSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFK 757 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555555444443 344444555567777777777777777764
No 336
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.54 E-value=1.9 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHH
Q 000960 632 CSTKMQELILYKSRCDNRLNEI 653 (1208)
Q Consensus 632 yrsKmQELqlqksR~~neLnel 653 (1208)
|+..|.+|...+.++.++|+.+
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 337
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.50 E-value=1.8 Score=54.83 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=26.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 659 elKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
.+++.++.|....+...+.+..|+..|+.++..+.++..+...+...++
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~ 272 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQ 272 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555566666665555555555555444444444
No 338
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=93.50 E-value=3.8 Score=44.26 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----------------hhhhHHH-------HHHhhhcHHHHHHHHHHHHHHHH
Q 000960 620 KEILTSREKIQFCSTKMQELILYKSRC----------------DNRLNEI-------TERVSGDKREVELLAKKYEEKYK 676 (1208)
Q Consensus 620 ~EI~ksReKiE~yrsKmQELqlqksR~----------------~neLnel-------~eelSelKREiQ~Lr~EyEee~K 676 (1208)
..|.+++.||..|+++..+|+.+.... -.+|.++ ..+..+|-.....||.++|+..+
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~ 95 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARK 95 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888877666211 1112222 22222222222236666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 677 QSGDVASKLTLEEATFRDIQEKKM 700 (1208)
Q Consensus 677 QvseLessLA~~Ea~LqDiQ~Q~~ 700 (1208)
.-..|...|+-+-..+..++.++.
T Consensus 96 ~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 96 ANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555555444444
No 339
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.49 E-value=4.6 Score=46.88 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=14.4
Q ss_pred HHHhhhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000960 654 TERVSGDKREVELLAKKYEEKY-KQSGDVASKLTLE 688 (1208)
Q Consensus 654 ~eelSelKREiQ~Lr~EyEee~-KQvseLessLA~~ 688 (1208)
..+|.++++|--.|...++.+. ..|..|..+|..+
T Consensus 112 ~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~L 147 (310)
T PF09755_consen 112 SRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERL 147 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444332 2234444444333
No 340
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.47 E-value=4.4 Score=46.70 Aligned_cols=67 Identities=7% Similarity=0.083 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 622 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 688 (1208)
Q Consensus 622 I~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~ 688 (1208)
+.+++...+.+..++.+.+.+....+++|..++..+.+----++.++..+.+..-|+.+++.-...+
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne 205 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNE 205 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444444444444444444444333333334444444444444444444443333
No 341
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=93.46 E-value=4.5 Score=40.33 Aligned_cols=42 Identities=5% Similarity=0.129 Sum_probs=20.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 659 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 700 (1208)
Q Consensus 659 elKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~ 700 (1208)
...+=+..|...|......+..++..+......|.++..+..
T Consensus 65 ~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 65 NYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554444444444444443
No 342
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.38 E-value=3.7 Score=47.51 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE---- 688 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~---- 688 (1208)
++..++..+.-.+..++..+++++.+++..+.....+++.+ ...|..++.|..+++...+.+.+-..++...
T Consensus 29 kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~----~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~k 104 (309)
T PF09728_consen 29 KKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKA----ILAKSKLESLCRELQKQNKKLKEESKRRAREEEEK 104 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554455555555555555555444444444322 2344444444444444444443322222111
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHH
Q 000960 689 --------EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 730 (1208)
Q Consensus 689 --------Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ 730 (1208)
...|.|||.++.+-...-.++.. +|..|++++..|-.+++
T Consensus 105 R~el~~kFq~~L~dIq~~~ee~~~~~~k~~~--eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 105 RKELSEKFQATLKDIQAQMEEQSERNIKLRE--ENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34566666666655544444333 34667777766654444
No 343
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=93.38 E-value=0.71 Score=43.73 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=55.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHH
Q 000960 657 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNEL 729 (1208)
Q Consensus 657 lSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL 729 (1208)
+..+|.|++.|.+++..-+.+..+++.+|+..-..++.|++++-+|+.+-.+|+..+ .+.|..|-.+|
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y-----EeEI~rLr~eL 73 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY-----EEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 456788888888888888888899999998888999999999999999999998888 34444444444
No 344
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=93.34 E-value=2.1 Score=50.72 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 000960 720 QHADHIQNELEELVKILNDRCKQ 742 (1208)
Q Consensus 720 Er~~~in~kL~ELEKlL~E~rkq 742 (1208)
+++..++.++++++..+..+..+
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~ 249 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENK 249 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555444444443
No 345
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=93.32 E-value=3 Score=42.50 Aligned_cols=81 Identities=12% Similarity=0.163 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH------HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEI------TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 693 (1208)
Q Consensus 620 ~EI~ksReKiE~yrsKmQELqlqksR~~neLnel------~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~Lq 693 (1208)
.++...+++++.++.+++.|..|...+.+.+... ..++-....=+..|...|.+..+.|..++..+......|.
T Consensus 23 ~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~ 102 (147)
T PRK05689 23 LQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQ 102 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555554444433332 1222233344566666666666666666666655555555
Q ss_pred HHHHHHH
Q 000960 694 DIQEKKM 700 (1208)
Q Consensus 694 DiQ~Q~~ 700 (1208)
+...+..
T Consensus 103 ~a~~~~k 109 (147)
T PRK05689 103 EKKQRLE 109 (147)
T ss_pred HHHHHHH
Confidence 5554444
No 346
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.27 E-value=7 Score=48.79 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 683 SKLTLEEATFRDIQEKKMELYQAILKM 709 (1208)
Q Consensus 683 ssLA~~Ea~LqDiQ~Q~~eLeaAL~kl 709 (1208)
..|+.+..++-++|.+...|..+|.+.
T Consensus 242 ~eLe~aq~ri~~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 242 TELEDAQQRIVFLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555566777888888888877743
No 347
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.26 E-value=3.3 Score=52.16 Aligned_cols=102 Identities=12% Similarity=0.189 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH------------
Q 000960 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE-----EAT------------ 691 (1208)
Q Consensus 629 iE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~-----Ea~------------ 691 (1208)
-|.++.++.+++.++.+...+|+....++++-++-+-.|+.-|+.++..+++|...|.++ ++.
T Consensus 986 nekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh 1065 (1480)
T COG3096 986 NEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELH 1065 (1480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHH
Confidence 346888888888999999999999999999999999999999999999999999887664 222
Q ss_pred --HHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHH
Q 000960 692 --FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (1208)
Q Consensus 692 --LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~EL 732 (1208)
|-.-+.+..+++.+|.-++.++ .+|..+++.+..++.++
T Consensus 1066 ~~Lst~RsRr~~~EkqlT~~E~E~--~~L~~~~rK~ErDY~~~ 1106 (1480)
T COG3096 1066 AQLSTNRSRRNQLEKQLTFCEAEM--DNLTRKLRKLERDYFEM 1106 (1480)
T ss_pred HHHhccHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHH
Confidence 3334445556666666555555 66777777777666644
No 348
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.25 E-value=0.079 Score=61.11 Aligned_cols=98 Identities=13% Similarity=0.200 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~L 692 (1208)
.+|..+|.-+..+++.+..+..++.+|..........|.+++.+|..++-+|..|+..++.-...|..|...|...+..+
T Consensus 35 eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssI 114 (326)
T PF04582_consen 35 ERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSI 114 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhH
Confidence 44455555555555555555555555554444444444444555555555555555555555555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000960 693 RDIQEKKMELYQAILKME 710 (1208)
Q Consensus 693 qDiQ~Q~~eLeaAL~kl~ 710 (1208)
-++|..+..++..+..|+
T Consensus 115 S~Lqs~v~~lsTdvsNLk 132 (326)
T PF04582_consen 115 SDLQSSVSALSTDVSNLK 132 (326)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhh
Confidence 777777776666666555
No 349
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=93.25 E-value=2.5 Score=50.65 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 664 VELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 664 iQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
++.||++|.+..+++.++...+.....++..++.++.+++..+.
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~ 330 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIA 330 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHH
Confidence 66677777777777777777766665666666666666555555
No 350
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=93.25 E-value=1.1 Score=48.35 Aligned_cols=29 Identities=34% Similarity=0.379 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELIL 641 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELql 641 (1208)
.++..+++++.+.+++++.++.+++++..
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555565666665655555555533
No 351
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=1.6 Score=55.44 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=24.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 657 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQ 704 (1208)
Q Consensus 657 lSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLea 704 (1208)
..+++-|.+.|..||++...+.+.|..++..++.+|.-+..+..++.+
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence 334444555555555555555555555555555555544444444433
No 352
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=4.1 Score=49.09 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH-hhC
Q 000960 731 ELVKILNDRCK-QYG 744 (1208)
Q Consensus 731 ELEKlL~E~rk-q~G 744 (1208)
++.|.+.|.++ |+.
T Consensus 404 DI~Kil~etreLqkq 418 (521)
T KOG1937|consen 404 DIVKILEETRELQKQ 418 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 55577777776 544
No 353
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.14 E-value=4.5 Score=54.14 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKRE 663 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKRE 663 (1208)
.++.+++.++.++++++...-++.+++....+.....|++..++..+++++
T Consensus 878 ~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~ 928 (1294)
T KOG0962|consen 878 ARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNE 928 (1294)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHH
Confidence 344455566666677766666677776666666666666655555555555
No 354
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=93.14 E-value=3.5 Score=49.21 Aligned_cols=7 Identities=29% Similarity=0.800 Sum_probs=3.3
Q ss_pred ccccchh
Q 000960 779 DEGFTFV 785 (1208)
Q Consensus 779 d~gf~~~ 785 (1208)
..||++|
T Consensus 398 ~RGya~v 404 (438)
T PRK00286 398 ARGYAIV 404 (438)
T ss_pred cCceEEE
Confidence 3455544
No 355
>PF15294 Leu_zip: Leucine zipper
Probab=93.12 E-value=2 Score=49.15 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=58.5
Q ss_pred hhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cccHHHHHHHHH
Q 000960 648 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESG-DGTLQQHADHIQ 726 (1208)
Q Consensus 648 neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~e-da~LQEr~~~in 726 (1208)
+++..+...++.+|-+++. .+++..++..+|+..|+.+...|-..|+++...+.+|.+.-.+.. -.++++-+..-|
T Consensus 190 q~l~dLE~k~a~lK~e~ek---~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn 266 (278)
T PF15294_consen 190 QDLSDLENKMAALKSELEK---ALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKN 266 (278)
T ss_pred cchhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhcc
Confidence 3455556666666654443 344445677888888999999999999999988888887554432 255566666666
Q ss_pred HHHHHHHHHH
Q 000960 727 NELEELVKIL 736 (1208)
Q Consensus 727 ~kL~ELEKlL 736 (1208)
.++.+|.|-|
T Consensus 267 ~QiKeLRkrl 276 (278)
T PF15294_consen 267 EQIKELRKRL 276 (278)
T ss_pred HHHHHHHHHh
Confidence 7777776554
No 356
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=3.1 Score=51.04 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT 691 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~ 691 (1208)
..++..++++..++.++|+.++.-+.|-....-...++...++.-+-.+..++..|.+.+|+++-.|..++.+|.-+...
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788888888888887777666655554445555566665555666677778888888888888888877665444
Q ss_pred HHH
Q 000960 692 FRD 694 (1208)
Q Consensus 692 LqD 694 (1208)
+-|
T Consensus 410 ~dd 412 (654)
T KOG4809|consen 410 EDD 412 (654)
T ss_pred hHh
Confidence 433
No 357
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.07 E-value=2 Score=53.18 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=12.2
Q ss_pred HHHH-HHHHHHHHHHHhhCcc
Q 000960 727 NELE-ELVKILNDRCKQYGLR 746 (1208)
Q Consensus 727 ~kL~-ELEKlL~E~rkq~GL~ 746 (1208)
.+.+ +|+|.+.+..|.++|.
T Consensus 370 ~~~A~~L~~~v~~eL~~L~Me 390 (557)
T COG0497 370 KKAAKELEKEVTAELKALAME 390 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 3444 6667777777766653
No 358
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=1.4 Score=44.78 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000960 680 DVASKLTLEEATFRDIQEKKMELYQAILKMEGE 712 (1208)
Q Consensus 680 eLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e 712 (1208)
-|+-+|..+|.+-.++++|+.+|+++|.++-++
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444555555666666666666666665433
No 359
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.05 E-value=2.5 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=11.1
Q ss_pred HHHHhhhhhhHHHHHHhhhcHHHHHHH
Q 000960 641 LYKSRCDNRLNEITERVSGDKREVELL 667 (1208)
Q Consensus 641 lqksR~~neLnel~eelSelKREiQ~L 667 (1208)
.+...+.+++.++...+++....+..|
T Consensus 1004 ~e~~sl~ne~~~~~~~~s~~~~~~~~~ 1030 (1822)
T KOG4674|consen 1004 REISSLQNELKSLLKAASQANEQIEDL 1030 (1822)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 360
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.04 E-value=6.1 Score=49.83 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 000960 733 VKILNDRC 740 (1208)
Q Consensus 733 EKlL~E~r 740 (1208)
++++.+++
T Consensus 257 ~~a~~q~~ 264 (716)
T KOG4593|consen 257 ERALSQLR 264 (716)
T ss_pred HHHHHHHH
Confidence 33333333
No 361
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.04 E-value=3.6 Score=52.43 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=8.2
Q ss_pred ccHHHHHHHHHHHHHHH
Q 000960 716 GTLQQHADHIQNELEEL 732 (1208)
Q Consensus 716 a~LQEr~~~in~kL~EL 732 (1208)
.-|.|.+..+|.+|+|+
T Consensus 131 ~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 131 KRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555555554433
No 362
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.03 E-value=4.3 Score=46.11 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000960 721 HADHIQNELEELVKILNDRCK 741 (1208)
Q Consensus 721 r~~~in~kL~ELEKlL~E~rk 741 (1208)
.+..++.+++.++..|..+..
T Consensus 180 ~~~~~~~~~~~~~~~l~~a~~ 200 (327)
T TIGR02971 180 DVDLAQAEVKSALEAVQQAEA 200 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444433
No 363
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=93.01 E-value=0.19 Score=44.06 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=35.4
Q ss_pred cccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 000960 455 KITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 500 (1208)
Q Consensus 455 ~ISgdELr~~fl--gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~ 500 (1208)
+++..|++.+|. ...+.+.-...+|..+|.+++|.|+.+||....+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 467889999994 6678888899999999999999999999985443
No 364
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=93.01 E-value=1.6 Score=44.68 Aligned_cols=76 Identities=11% Similarity=0.190 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~E 689 (1208)
+.|++.++.+.|..-|++ +..+++.|..+..++..--+.+++++.++++.+..++-+++..+..+..|+.+|..+|
T Consensus 48 v~kql~~vs~~l~~tKkh---LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKH---LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555333332 3444444444444444444556666777777777777777777766666666665554
No 365
>PRK10869 recombination and repair protein; Provisional
Probab=93.00 E-value=3.4 Score=51.20 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=45.4
Q ss_pred hhHHHHHHhhhcHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCcccHHHH
Q 000960 649 RLNEITERVSGDKREVELLAKKYE----EKYKQSGDVASKLTLE---EATFRDIQEKKMELYQAILKMEGESGDGTLQQH 721 (1208)
Q Consensus 649 eLnel~eelSelKREiQ~Lr~EyE----ee~KQvseLessLA~~---Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr 721 (1208)
+|+++.+|+.. ++.|..+|- +......+++++|..+ +..++.++.++.++++.|.+ +-+.
T Consensus 297 ~l~~ie~Rl~~----l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~---------~A~~ 363 (553)
T PRK10869 297 RLAELEQRLSK----QISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALE---------TAQK 363 (553)
T ss_pred HHHHHHHHHHH----HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 34445444443 334444443 3333344444444333 34455555555555555544 2334
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhCcc
Q 000960 722 ADHIQNELE-ELVKILNDRCKQYGLR 746 (1208)
Q Consensus 722 ~~~in~kL~-ELEKlL~E~rkq~GL~ 746 (1208)
+...-.+.+ +|++.+++..+.++|.
T Consensus 364 LS~~R~~aA~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 364 LHQSRQRYAKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444445545 7888888888988874
No 366
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.96 E-value=8.5 Score=46.29 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 629 iE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
.|-|-++-.|-.+.+..|+-++..+.++.+++|-.+-+|+..+|...-....+...|..+-.+|.+.|.-+..+-++|-.
T Consensus 285 rEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 285 REILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555556666666666666666666555544444444444544444555555555555555544
No 367
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=92.89 E-value=1.6 Score=49.46 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000960 689 EATFRDIQEKKMELYQAI 706 (1208)
Q Consensus 689 Ea~LqDiQ~Q~~eLeaAL 706 (1208)
+++++.+|+++.+..++|
T Consensus 195 ~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 195 QAELDTLQAQIDAAIAAL 212 (301)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 333444444433333333
No 368
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=92.86 E-value=1.6 Score=49.90 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cccCcccHHHHHHHHHHHHHHH------HHHHHHHHHhhC
Q 000960 691 TFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEEL------VKILNDRCKQYG 744 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~kl~-~e~eda~LQEr~~~in~kL~EL------EKlL~E~rkq~G 744 (1208)
.+++|-.|+.-|++-|+.|+ |+. |=+|+.++-.+.+=| .++|..+||...
T Consensus 69 ~y~ema~~L~~LeavLqRir~G~~----LVekM~~YASDQEVLdMh~FlreAL~rLrqeeP 125 (324)
T PF12126_consen 69 DYEEMAGQLGRLEAVLQRIRTGGA----LVEKMKLYASDQEVLDMHGFLREALERLRQEEP 125 (324)
T ss_pred HHHHHHHHHhHHHHHHHHHHhHHH----HHHHHHHhcchHHHHHHHHHHHHHHHHhhhhcC
Confidence 36677778888888888888 444 678888887666633 477887777543
No 369
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=92.86 E-value=1.9 Score=47.41 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000960 682 ASKLTLEEATFRDIQEKKMELYQAILKMEGES 713 (1208)
Q Consensus 682 essLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ 713 (1208)
..+|..+|.+++++-.+--+++.|...|+.+.
T Consensus 174 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei 205 (221)
T PF05700_consen 174 GEELRYLEQRWKELVSKNLEIEVACEELEQEI 205 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888998888888888888866443
No 370
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=92.86 E-value=3.9 Score=41.82 Aligned_cols=40 Identities=5% Similarity=0.011 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 661 KREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 700 (1208)
Q Consensus 661 KREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~ 700 (1208)
..=+..|...|.++.+.|..++..+......|.+.+.+..
T Consensus 70 ~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k 109 (146)
T PRK07720 70 QQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVK 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555544444334444443333
No 371
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=92.85 E-value=2.2 Score=41.63 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000960 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEI 653 (1208)
Q Consensus 620 ~EI~ksReKiE~yrsKmQELqlqksR~~neLnel 653 (1208)
.+++.++++++.+..+.+.|.....+|..-++++
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666665544444
No 372
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.83 E-value=4.8 Score=52.48 Aligned_cols=10 Identities=0% Similarity=0.318 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000960 719 QQHADHIQNE 728 (1208)
Q Consensus 719 QEr~~~in~k 728 (1208)
+++...++.+
T Consensus 360 ~~~~~~l~~~ 369 (908)
T COG0419 360 EERLKELEER 369 (908)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 373
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.78 E-value=1 Score=55.57 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHh
Q 000960 435 HSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 505 (1208)
Q Consensus 435 ~eEk~ey~eaF~~fDkD~DG~ISgdELr~~fl--gs~LpeeeL~qIW~LaD~D~DGkLdfdEFvvAM~LI~r~ 505 (1208)
|+-.+++...|+..=-.-+-.++.+|=..++. +++...+....-+..+ ..-|.+|...+.-+++.
T Consensus 301 P~~V~KiAasf~A~ly~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA------~kAY~~yk~kl~~vEr~ 367 (652)
T COG2433 301 PETVKKIAASFNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERDALAAA------YKAYLAYKPKLEKVERK 367 (652)
T ss_pred hHHHHHHHHHcCCcccCCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHH------HHHHHHHHHHHHHHHHh
Confidence 35567777777764333333477777666553 4444443333322221 13355555544444444
No 374
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=92.77 E-value=0.94 Score=55.20 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=48.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea 690 (1208)
+++++.++++++.+.+.+++-++.++.-|........+ .....+......+..|.+-.+-..+++.+|..++..++.
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTE---PIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAER 152 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666655555555444333221111 000000001122333444444444445555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 000960 691 TFRDIQEKKMELYQAILKMEG 711 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~kl~~ 711 (1208)
+++++++++.+|+++|.++..
T Consensus 153 ~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 153 RIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 677777777777777766553
No 375
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=92.76 E-value=1.6 Score=53.41 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 677 QSGDVASKLTLEEATFRDIQEKKMEL 702 (1208)
Q Consensus 677 QvseLessLA~~Ea~LqDiQ~Q~~eL 702 (1208)
|++.+.+.|+....+|..-+++|+.|
T Consensus 488 QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 488 QLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 376
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=92.75 E-value=0.24 Score=60.01 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=61.0
Q ss_pred CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCC-----HHHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 000960 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGSNLP-----KQVLAQVWSHADQRKAGFLNRAEFFNALKL 72 (1208)
Q Consensus 5 t~Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~SgLP-----~~~L~qIW~LAD~d~DG~LdrdEF~vAM~L 72 (1208)
|.+|.....+-|..+| |++|+|+-.++...|.+.+++ .++.++|...++.|.+|.++++||+.++.-
T Consensus 14 tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 14 TQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred cHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 6688899999999999 999999999999999998866 599999999999999999999999985543
No 377
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=92.73 E-value=4 Score=45.90 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 000960 598 QESLNAKLKEATE----ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITER 656 (1208)
Q Consensus 598 ~~~l~~~~qEatE----a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~ee 656 (1208)
-+++..++.+.++ --.+++.+.+.+-++-++|--+-..+-++.+-..|.+++|.-+..+
T Consensus 80 iNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sq 142 (254)
T KOG2196|consen 80 INKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQ 142 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445555544443 1256777777777777777766666666666666666666666543
No 378
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=92.72 E-value=5.8 Score=52.65 Aligned_cols=7 Identities=29% Similarity=0.040 Sum_probs=3.2
Q ss_pred CCCCCcc
Q 000960 920 FDEPSWG 926 (1208)
Q Consensus 920 ~d~~~wg 926 (1208)
+|||+.+
T Consensus 981 lDEp~~~ 987 (1047)
T PRK10246 981 LDEGFGT 987 (1047)
T ss_pred EeCCCCc
Confidence 4555433
No 379
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.71 E-value=3.2 Score=53.51 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=5.6
Q ss_pred CCCCHHHHHHHH
Q 000960 59 GFLNRAEFFNAL 70 (1208)
Q Consensus 59 G~LdrdEF~vAM 70 (1208)
|.|+-.|++...
T Consensus 82 ~~l~~~eL~~i~ 93 (782)
T PRK00409 82 GVLSGDELLEIA 93 (782)
T ss_pred CCCCHHHHHHHH
Confidence 445555544333
No 380
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=92.70 E-value=0.78 Score=55.86 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHH
Q 000960 680 DVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 733 (1208)
Q Consensus 680 eLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELE 733 (1208)
++.+-+.....++..+..++.+++.+|.+ |++++..++.+|+.|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRE---------LEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhc
Confidence 33333444444444444444444444443 4555555555555443
No 381
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=92.55 E-value=4.1 Score=51.61 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 000960 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTL------- 687 (1208)
Q Consensus 615 l~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~------- 687 (1208)
+-+.+..+..+.+.++.-...+.+|.........+|+.+++.|+..+..-+.|+.+..++++-.++|+.=|..
T Consensus 25 l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~ 104 (701)
T PF09763_consen 25 LLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEH 104 (701)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3344555566666666666666666666666777777777777777777777877777777777777643222
Q ss_pred ---H-------HHHHHHHHHHHHHHHHHHHHHhcc--cCc------ccHHHHHHHHH
Q 000960 688 ---E-------EATFRDIQEKKMELYQAILKMEGE--SGD------GTLQQHADHIQ 726 (1208)
Q Consensus 688 ---~-------Ea~LqDiQ~Q~~eLeaAL~kl~~e--~ed------a~LQEr~~~in 726 (1208)
+ ...+..+.+....|+.||..|+.. ..+ .-|+||...+.
T Consensus 105 l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~ 161 (701)
T PF09763_consen 105 LEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYE 161 (701)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHH
Confidence 1 122888888999999999997744 222 33466665555
No 382
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.52 E-value=11 Score=41.33 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHH
Q 000960 623 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL 666 (1208)
Q Consensus 623 ~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~ 666 (1208)
++..++++....++.|-++-...++....++.-.|+=...++++
T Consensus 56 ~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~ 99 (205)
T KOG1003|consen 56 QKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELER 99 (205)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33334444444444444444444444444443333333333333
No 383
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=92.51 E-value=7 Score=45.79 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 000960 696 QEKKMELYQAIL 707 (1208)
Q Consensus 696 Q~Q~~eLeaAL~ 707 (1208)
+.|+.+|..++.
T Consensus 96 ~~q~~~l~~~~~ 107 (332)
T TIGR01541 96 RKQQRDLNKAMT 107 (332)
T ss_pred HHHHHHHHHhhh
Confidence 334444444443
No 384
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=1.1 Score=52.27 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=15.5
Q ss_pred CCCCCcccHHHHHHHHHcCCCCHHHHHHHH
Q 000960 450 IDRDGKITGEQAYNLFLSWRLPREVLKQVW 479 (1208)
Q Consensus 450 kD~DG~ISgdELr~~flgs~LpeeeL~qIW 479 (1208)
.|.+|+|.. ..|..|..+..+|-.++
T Consensus 103 Vd~nG~V~L----PYLh~W~~pssdLv~Li 128 (365)
T KOG2391|consen 103 VDPNGKVYL----PYLHNWDPPSSDLVGLI 128 (365)
T ss_pred cCCCCeEec----hhhccCCCccchHHHHH
Confidence 466788854 34456766666555444
No 385
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.50 E-value=7.9 Score=44.00 Aligned_cols=8 Identities=0% Similarity=0.098 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 000960 723 DHIQNELE 730 (1208)
Q Consensus 723 ~~in~kL~ 730 (1208)
..++.+|+
T Consensus 189 ~~~~~~l~ 196 (327)
T TIGR02971 189 KSALEAVQ 196 (327)
T ss_pred HHHHHHHH
Confidence 33333333
No 386
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=92.48 E-value=3.8 Score=43.71 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 000960 722 ADHIQNELEEL 732 (1208)
Q Consensus 722 ~~~in~kL~EL 732 (1208)
+.+++.+++|.
T Consensus 116 l~q~~~~~eEt 126 (165)
T PF09602_consen 116 LSQISKQYEET 126 (165)
T ss_pred HHHHHhhHHHH
Confidence 34444444433
No 387
>PF13166 AAA_13: AAA domain
Probab=92.47 E-value=4.2 Score=51.00 Aligned_cols=51 Identities=24% Similarity=0.370 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHH----------HHHHHHHHhhCcc
Q 000960 694 DIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV----------KILNDRCKQYGLR 746 (1208)
Q Consensus 694 DiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELE----------KlL~E~rkq~GL~ 746 (1208)
.++.++..++.++..++... ..+++.+..++.++.+|+ ...++.++.+|..
T Consensus 414 ~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~~ 474 (712)
T PF13166_consen 414 EYQKEIKELEKEINSLEKKL--KKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGFS 474 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 33444445554555443322 234444555554444442 5556666666643
No 388
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=92.42 E-value=6.7 Score=43.94 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 000960 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE-------------EKYKQSGDVASKLTLEEATFRDI 695 (1208)
Q Consensus 629 iE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyE-------------ee~KQvseLessLA~~Ea~LqDi 695 (1208)
++.+...+++|..-..+|.+.|+++.+.|.+..++-+.+|.+|- .-++.+..+...|..+...=..+
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~ 103 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL 103 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34555555666666666666666666666666666666666651 22344444444444444444444
Q ss_pred HHHHHHHHHHHH
Q 000960 696 QEKKMELYQAIL 707 (1208)
Q Consensus 696 Q~Q~~eLeaAL~ 707 (1208)
..++......|.
T Consensus 104 ~~~~~~~~~~l~ 115 (296)
T PF13949_consen 104 RSKLESIEENLE 115 (296)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 389
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.40 E-value=2.7 Score=51.32 Aligned_cols=125 Identities=10% Similarity=0.127 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHH-------HHHHHH--HHHHHH
Q 000960 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQSGDV--ASKLTL 687 (1208)
Q Consensus 617 elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~-------KQvseL--essLA~ 687 (1208)
+++.-+.+++.+++.++.........-....++|..++.++.-..-|+..|+.++.+.. ...+.+ +.++..
T Consensus 17 Ql~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~~~~peke~~~~~~~~~~n~m~~ 96 (531)
T PF15450_consen 17 QLEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQRAQVPEKEACEPSSIQNQNQMQQ 96 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCCCccchhhHHh
Confidence 33333444444444444333333333333334444444444444444444555443222 223333 444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 688 EEATFRDIQEKKMELYQAILKME--GESGDGTLQQHADHIQNELEELVKILNDRCK 741 (1208)
Q Consensus 688 ~Ea~LqDiQ~Q~~eLeaAL~kl~--~e~eda~LQEr~~~in~kL~ELEKlL~E~rk 741 (1208)
++.+|.++++++.+|..-+..-+ .+.....+-.|+..++-.|++-++.++.+|-
T Consensus 97 lD~rLvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee~~re~a~~ 152 (531)
T PF15450_consen 97 LDKRLVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEEQGREDACS 152 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 67778888888877765544322 2233355567777777888877777777765
No 390
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=92.35 E-value=5 Score=48.35 Aligned_cols=7 Identities=14% Similarity=0.686 Sum_probs=3.9
Q ss_pred ccccchh
Q 000960 779 DEGFTFV 785 (1208)
Q Consensus 779 d~gf~~~ 785 (1208)
..||++|
T Consensus 393 ~RGYai~ 399 (432)
T TIGR00237 393 ARGYSIA 399 (432)
T ss_pred cCceEEE
Confidence 4566655
No 391
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=92.35 E-value=4.9 Score=51.75 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=58.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhhhH-HHHHHhhhc----------HHHHH
Q 000960 606 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYK---------SRCDNRLN-EITERVSGD----------KREVE 665 (1208)
Q Consensus 606 qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqk---------sR~~neLn-el~eelSel----------KREiQ 665 (1208)
++-.+..+++.+++.+++.++++.+.|+.+..-|..-. .-|-.+++ ....+..+. -.|+.
T Consensus 620 kd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~ 699 (984)
T COG4717 620 KDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELN 699 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHH
Confidence 33344668888999999999988886666654432100 00111110 000111111 12222
Q ss_pred -HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 000960 666 -LLAKKYEEKYKQSGDVASK-----------LTLEEATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 666 -~Lr~EyEee~KQvseLess-----------LA~~Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
.|+++++...|+|..|=.. .|..+.++++..+++..++++|.
T Consensus 700 ~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~ 753 (984)
T COG4717 700 DELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLE 753 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777777777877777443 34456778888888888888887
No 392
>PRK10698 phage shock protein PspA; Provisional
Probab=92.34 E-value=4.7 Score=44.56 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=17.8
Q ss_pred HHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 643 KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 684 (1208)
Q Consensus 643 ksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLess 684 (1208)
|..|...+..+..++..++..++.|+..+..-...+.++..+
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333
No 393
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=9.4 Score=46.22 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 000960 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 678 (1208)
Q Consensus 629 iE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQv 678 (1208)
.+...+.++.+...+.|.-..|..-..=+++|...+..+++++.+-.+|.
T Consensus 267 ~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqw 316 (521)
T KOG1937|consen 267 FEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQW 316 (521)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555444444444444444444444444444333
No 394
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=92.26 E-value=3.3 Score=49.61 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 631 FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 631 ~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.+-.+++++......|.+.|.++..+..++..+-..+-.+|-....|+=+.+..|+.+|++++=.|.|+.-|.+...-..
T Consensus 194 ~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~ 273 (447)
T KOG2751|consen 194 RLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNA 273 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44445566667777788888887777777777777777777777778778888899999998888888888887766211
Q ss_pred ----------cccCc------ccHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcc-----------------ccccccc
Q 000960 711 ----------GESGD------GTLQQHADHIQNELEELVKILNDRCKQYGLRAKPT-----------------LLVELPF 757 (1208)
Q Consensus 711 ----------~e~ed------a~LQEr~~~in~kL~ELEKlL~E~rkq~GL~aK~~-----------------~~vElp~ 757 (1208)
+..-+ ......-.+||+-+.++.-+|.-.|+++||..-.- .++|||.
T Consensus 274 ~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~~~~~~el~l 353 (447)
T KOG2751|consen 274 TFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRMVNLPYELPL 353 (447)
T ss_pred eeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhccCCCccchh
Confidence 11111 22345678899999999999999999888654111 1344443
Q ss_pred CcccCcccccchhccchhcccccccchhhhhhhccc
Q 000960 758 GWQPGIQEGTADWDEDWDKLEDEGFTFVKELTLEVQ 793 (1208)
Q Consensus 758 g~~~~~qe~a~~w~edw~~~~d~gf~~~~~~t~~~~ 793 (1208)
=+- ++--.-|+.-+|+=.-.=.-.+++++..+.
T Consensus 354 ~~s---gg~~~f~~tkfD~amvafLd~L~qf~~e~~ 386 (447)
T KOG2751|consen 354 FQS---GGLKFFWSTKFDKAMVAFLDCLKQFADELE 386 (447)
T ss_pred hcC---CCceeeeccccCHHHHHHHHHHHHHHHHHH
Confidence 332 334566777444321111225566666665
No 395
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=92.22 E-value=5.5 Score=47.26 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 623 LTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREV----ELLAKKYEEKYKQSGDVASKLTLEEATFRDIQE 697 (1208)
Q Consensus 623 ~ksReKiE-~yrsKmQELqlqksR~~neLnel~eelSelKREi----Q~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~ 697 (1208)
..+|+.|+ -+..-..+|..+..++...|..-..+....|.++ ...+.+|.+..+.+..|+..|.+.++-|+-+|.
T Consensus 221 ~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqT 300 (384)
T PF03148_consen 221 AQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQT 300 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455555 2333334455555555544443333333333333 346666666667777777777777777776666
Q ss_pred HHH
Q 000960 698 KKM 700 (1208)
Q Consensus 698 Q~~ 700 (1208)
++.
T Consensus 301 RL~ 303 (384)
T PF03148_consen 301 RLE 303 (384)
T ss_pred HHh
Confidence 654
No 396
>PF14282 FlxA: FlxA-like protein
Probab=92.21 E-value=0.56 Score=46.20 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 675 YKQSGDVASKLTLEEATFRDIQEKKMELYQA 705 (1208)
Q Consensus 675 ~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaA 705 (1208)
.+++..|+.+|.+++++|+.+|.++.+....
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666544433
No 397
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.19 E-value=5.6 Score=53.26 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 000960 719 QQHADHIQ 726 (1208)
Q Consensus 719 QEr~~~in 726 (1208)
|++...||
T Consensus 937 qk~~~~in 944 (1294)
T KOG0962|consen 937 QKKRNDIN 944 (1294)
T ss_pred HHHHHHHH
Confidence 33334444
No 398
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=8.1 Score=42.62 Aligned_cols=85 Identities=24% Similarity=0.277 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh-cccCcccHHHHHHHHHHHHHHH----
Q 000960 660 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQE--KKMELYQAILKME-GESGDGTLQQHADHIQNELEEL---- 732 (1208)
Q Consensus 660 lKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~--Q~~eLeaAL~kl~-~e~eda~LQEr~~~in~kL~EL---- 732 (1208)
-+||++.+.+.+++.-.++..-.++++.+..+|-++.. +.+|=+.+|.++- +.-....-...+..|..+|++|
T Consensus 87 nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~ 166 (222)
T KOG3215|consen 87 NLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDDLN 166 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555444443332 3334455555544 4444443355677777888876
Q ss_pred ---HHHHHHHHHhhC
Q 000960 733 ---VKILNDRCKQYG 744 (1208)
Q Consensus 733 ---EKlL~E~rkq~G 744 (1208)
+.+|..||+|+-
T Consensus 167 ~s~~~klelrRkqf~ 181 (222)
T KOG3215|consen 167 NSTETKLELRRKQFK 181 (222)
T ss_pred hhhHHHHHHHhhcch
Confidence 378888888764
No 399
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=92.13 E-value=0.12 Score=57.56 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-----CCCCHHHHHHHHHHhCCCCCCCcCHHHHHH
Q 000960 437 EVQKYTKVFVQVDIDRDGKITGEQAYNLFLS-----WRLPREVLKQVWDLSDQDNDGMLSLKEFCT 497 (1208)
Q Consensus 437 Ek~ey~eaF~~fDkD~DG~ISgdELr~~flg-----s~LpeeeL~qIW~LaD~D~DGkLdfdEFvv 497 (1208)
-..++..+|.+.|.+.||+|+..|++.-++. ..-..++-+..|+.+|.|+||.|.++||.+
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 4678999999999999999999999876532 122344555678889999999999999975
No 400
>PLN03188 kinesin-12 family protein; Provisional
Probab=92.07 E-value=6.7 Score=52.41 Aligned_cols=177 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCchhhHHHhhhhcHHHHHHHHHHHHHHHHHhH---HHHHHHH--------------------------
Q 000960 570 DRSVQTTPQKSKVPELEKHLMDQLSKEEQESLNAKLKEATEADK---KVEELEK-------------------------- 620 (1208)
Q Consensus 570 d~~~~~~~~ks~~P~ldd~ll~q~s~ee~~~l~~~~qEatEa~K---Kl~elE~-------------------------- 620 (1208)
|++..+...+..+|--...++....+.|...-+.+.+.|.++++ -|.+|..
T Consensus 852 ~~~~~~~~~~~~v~k~~~kvl~~a~~re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l~~~~dg~ 931 (1320)
T PLN03188 852 DGSESAEKSKKQVPKAVEKVLAGAIRREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGV 931 (1320)
T ss_pred cCcccccchhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHHhhhcccc
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHH---------HHHHHHHH-----------
Q 000960 621 ------------------------------------EILTSREKIQFCSTKM---------QELILYKS----------- 644 (1208)
Q Consensus 621 ------------------------------------EI~ksReKiE~yrsKm---------QELqlqks----------- 644 (1208)
|+...+++++.|+..+ .||+.-+.
T Consensus 932 l~~~~~~~~~~~~~~~~~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~ 1011 (1320)
T PLN03188 932 LSKEDFLEEELASLMHEHKLLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLP 1011 (1320)
T ss_pred cchhhhhhhhhhhhhhhHHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q ss_pred ------------------------------hhhhhh--------------------HHHHHHhhhcHHHHHHHHHHHHHH
Q 000960 645 ------------------------------RCDNRL--------------------NEITERVSGDKREVELLAKKYEEK 674 (1208)
Q Consensus 645 ------------------------------R~~neL--------------------nel~eelSelKREiQ~Lr~EyEee 674 (1208)
..+++. .++..++..-|.-.++||.|++.+
T Consensus 1012 s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~e 1091 (1320)
T PLN03188 1012 SARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTE 1091 (1320)
T ss_pred hhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHhcccCc------------ccHHHHHHHHHHHHHHH---
Q 000960 675 YKQSGDVASKLTLE---EAT----FRDIQEKKMELYQAILKMEGESGD------------GTLQQHADHIQNELEEL--- 732 (1208)
Q Consensus 675 ~KQvseLessLA~~---Ea~----LqDiQ~Q~~eLeaAL~kl~~e~ed------------a~LQEr~~~in~kL~EL--- 732 (1208)
++-..+|...|.++ .|+ +.|||++|.+|-+-=-++..+.+| +. ..-|.-+.++|.-|
T Consensus 1092 K~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~-~~f~~alaae~s~l~~e 1170 (1320)
T PLN03188 1092 KRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAE-SKFINALAAEISALKVE 1170 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHH-hhCccc
Q 000960 733 -VKILNDRCK-QYGLRA 747 (1208)
Q Consensus 733 -EKlL~E~rk-q~GL~a 747 (1208)
||-+.-.++ .+||..
T Consensus 1171 reker~~~~~enk~l~~ 1187 (1320)
T PLN03188 1171 REKERRYLRDENKSLQA 1187 (1320)
T ss_pred HHHHHHHHHHhhHHHHH
No 401
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=5.8 Score=41.79 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH------HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI------TERVSGDKREVELLAKKYEEKYKQSGDVASKLT 686 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel------~eelSelKREiQ~Lr~EyEee~KQvseLessLA 686 (1208)
+++.++..++.+.++..+...+++..|..|..+-.+.++.. ..+.....+-|..|...|++...+++.+..++.
T Consensus 16 k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve 95 (148)
T COG2882 16 KEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKLRKQVE 95 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777777777766666555444332 223334445555677777777766666665544
Q ss_pred HHHHHHHH
Q 000960 687 LEEATFRD 694 (1208)
Q Consensus 687 ~~Ea~LqD 694 (1208)
.....|+.
T Consensus 96 ~~r~~w~e 103 (148)
T COG2882 96 QKREIWQE 103 (148)
T ss_pred HHHHHHHH
Confidence 43333333
No 402
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.04 E-value=9.2 Score=48.55 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 624 TSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELY 703 (1208)
Q Consensus 624 ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLe 703 (1208)
..++||+.|+.-+.||.....+...-..+..+++.+-....+..+.| |.+|.++||+-...|.--|.+--+-+
T Consensus 345 R~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~E-------vD~lksQLADYQQALD~QQTRAlQYQ 417 (1480)
T COG3096 345 RQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELE-------VDELKSQLADYQQALDVQQTRAIQYQ 417 (1480)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34456666666666654332222222222233333333333333333 34444445444444433344433344
Q ss_pred HHHHHHh-ccc-------CcccHHHHHHHHHHHHHHHH--------------HHHHHHHHhhCcccCcccccccccCccc
Q 000960 704 QAILKME-GES-------GDGTLQQHADHIQNELEELV--------------KILNDRCKQYGLRAKPTLLVELPFGWQP 761 (1208)
Q Consensus 704 aAL~kl~-~e~-------eda~LQEr~~~in~kL~ELE--------------KlL~E~rkq~GL~aK~~~~vElp~g~~~ 761 (1208)
+||++++ ... .-.+.+++...+..+-+++. -+.+..-|-|.|+.|-.--|.-+.+|+.
T Consensus 418 QAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~~~ 497 (1480)
T COG3096 418 QAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDV 497 (1480)
T ss_pred HHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhHHHH
Confidence 4444333 211 12555777777776555432 2233334455566554433444445553
No 403
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.02 E-value=3.8 Score=49.58 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------cccHHHHHHHHHHHHHHH
Q 000960 675 YKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESG----------DGTLQQHADHIQNELEEL 732 (1208)
Q Consensus 675 ~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~e----------da~LQEr~~~in~kL~EL 732 (1208)
.-.+..|+..|...|.+++-||++..+|..+|.+ ++.. ...|-..++.|+.+.++|
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k--q~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L 394 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK--QGISTEQFELMNQEREKLTRELDKINIQSDKL 394 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3445667777777888899999999999998886 3331 133344455566666655
No 404
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.02 E-value=6.6 Score=51.27 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHH
Q 000960 434 THSEVQKYTKVFVQ 447 (1208)
Q Consensus 434 S~eEk~ey~eaF~~ 447 (1208)
+..++.++...|+.
T Consensus 125 t~s~i~elv~~fNI 138 (1072)
T KOG0979|consen 125 TKSEIEELVAHFNI 138 (1072)
T ss_pred hhHHHHHHHHHHhc
Confidence 44556666666654
No 405
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=92.00 E-value=3.6 Score=37.38 Aligned_cols=100 Identities=15% Similarity=0.320 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 630 QFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (1208)
Q Consensus 630 E~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl 709 (1208)
..|...+.++......++..|.... ....-.+++.+. +++..++..|...+.++.+|...-..| .+.
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~--~~~~~~~~~~~~-------~~~~~~~~ei~~~~~~l~~l~~~~~~L----~~~ 70 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSE--PGSDLEELEEQL-------KKHKELQEEIESRQERLESLNEQAQQL----IDS 70 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCT--HSSSHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--CCCCHHHHHHHH-------HHHhhhhhHHHHHHHHHHHHHHHHHHH----HHc
Confidence 3455566666666665555442221 112222222222 233333344444444444444333332 111
Q ss_pred hcccCcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000960 710 EGESGDGTLQQHADHIQNELEELVKILNDRCKQY 743 (1208)
Q Consensus 710 ~~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq~ 743 (1208)
+......+++++..|+...+.|.+.+.++++++
T Consensus 71 -~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 71 -GPEDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp -THTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 222336778889999988888888888887753
No 406
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=92.00 E-value=6.7 Score=52.12 Aligned_cols=41 Identities=7% Similarity=-0.066 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 668 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 668 r~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
+..+++..+++.+++.++..++.++..++.++..+++++.+
T Consensus 716 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 756 (1047)
T PRK10246 716 LDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDT 756 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555566666666555555543
No 407
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=91.94 E-value=11 Score=45.37 Aligned_cols=92 Identities=20% Similarity=0.168 Sum_probs=44.4
Q ss_pred HHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH-HHH
Q 000960 609 TEADKKVEELEKEILTSREK----IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGD-VAS 683 (1208)
Q Consensus 609 tEa~KKl~elE~EI~ksReK----iE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvse-Les 683 (1208)
.|+......++..+.+++.+ +.++...+||-.-...|.++.||++++ --.+||..|++++....-.+.= ..+
T Consensus 222 ~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e---lHq~Ei~~LKqeLa~~EEK~~Yqs~e 298 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTE---LHQNEIYNLKQELASMEEKMAYQSYE 298 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33434455556666555553 345555555544444455555555543 2344555555554333322211 123
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000960 684 KLTLEEATFRDIQEKKMELY 703 (1208)
Q Consensus 684 sLA~~Ea~LqDiQ~Q~~eLe 703 (1208)
+..+++..+--.|+++..||
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666
No 408
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.92 E-value=13 Score=43.25 Aligned_cols=53 Identities=28% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH
Q 000960 616 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 674 (1208)
Q Consensus 616 ~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee 674 (1208)
..|..++..+|+..-..+.+...-+-|.+ |.+-.+|.+++++-+.|..+|+.+
T Consensus 51 ~~L~~e~~~lr~~sv~~~~~aEqEEE~is------N~LlKkl~~l~keKe~L~~~~e~E 103 (310)
T PF09755_consen 51 KHLQEENRALREASVRIQAKAEQEEEFIS------NTLLKKLQQLKKEKETLALKYEQE 103 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333333333333 445566666777666666666554
No 409
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=91.90 E-value=3.3 Score=43.85 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=40.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhhhHHH-HHHhhhcHHHHHHHHHHHHHHHHHH-HHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTK-----MQELILYKSRCDNRLNEI-TERVSGDKREVELLAKKYEEKYKQS-GDVAS 683 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsK-----mQELqlqksR~~neLnel-~eelSelKREiQ~Lr~EyEee~KQv-seLes 683 (1208)
+++.+.+|++++.+.|.+++..+.. -.+....+...+.+|.++ .+++......++.++.+|.++..++ -++.+
T Consensus 60 Ae~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~ 139 (155)
T PRK06569 60 VEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNIIE 139 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455555666666655554433222 122233344444444443 4445555555555555555555443 23334
Q ss_pred HHHHHHHHHHHHH
Q 000960 684 KLTLEEATFRDIQ 696 (1208)
Q Consensus 684 sLA~~Ea~LqDiQ 696 (1208)
+|+-+++.+..+|
T Consensus 140 k~~~~~~~~~~~~ 152 (155)
T PRK06569 140 KIAGTKADMNLLQ 152 (155)
T ss_pred HHhCccccHHHHh
Confidence 4444444444433
No 410
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.86 E-value=13 Score=41.33 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000960 689 EATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 689 Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
|...+.|..++.+|..++..
T Consensus 120 e~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 120 EELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666654
No 411
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.85 E-value=0.048 Score=68.59 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=5.3
Q ss_pred HHHHHHHHhh
Q 000960 497 TALYLMERYR 506 (1208)
Q Consensus 497 vAM~LI~r~l 506 (1208)
.+|..|....
T Consensus 145 ~im~~Iqev~ 154 (713)
T PF05622_consen 145 AIMEAIQEVT 154 (713)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3456665444
No 412
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=0.25 Score=49.81 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--------cC---CC-CHHHHHHHH----HHhCCCCCCCcCHHHH
Q 000960 432 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--------SW---RL-PREVLKQVW----DLSDQDNDGMLSLKEF 495 (1208)
Q Consensus 432 ~LS~eEk~ey~eaF~~fDkD~DG~ISgdELr~~fl--------gs---~L-peeeL~qIW----~LaD~D~DGkLdfdEF 495 (1208)
+|++++.+- -.|++.|.|++|+|.|-||..++. +. .| ++.+|..|+ +.-|.|+||.|+|-||
T Consensus 62 ~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 577765432 359999999999999999988882 22 12 466666555 4568899999999999
Q ss_pred HHH
Q 000960 496 CTA 498 (1208)
Q Consensus 496 vvA 498 (1208)
+.+
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 843
No 413
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=91.84 E-value=3.1 Score=51.04 Aligned_cols=56 Identities=13% Similarity=0.279 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCcccHHHHHHHHHHHHHHHH
Q 000960 675 YKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELV 733 (1208)
Q Consensus 675 ~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~-~e~eda~LQEr~~~in~kL~ELE 733 (1208)
...-+.|+..|+..+.+|.+|+.++.++.+.|..|+ ++. .-++.+.++..+|.++.
T Consensus 374 ~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl---~Are~l~~~~~~l~eik 430 (570)
T COG4477 374 EVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDEL---EARENLERLKSKLHEIK 430 (570)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 333455556666677777777777777777777766 332 12455555555555443
No 414
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=91.78 E-value=6.8 Score=44.79 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 636 mQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
.+.+++.+..++..|+ ..+.|++.+..++.++.+.++++..+++++.++|.++..+-..|+.-+.-
T Consensus 188 ~~~~e~eke~~~r~l~-------~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 188 HETREEEKEEKDRKLE-------LKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554544333 44455555555555556666676777776777777776666666665553
No 415
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=91.76 E-value=11 Score=46.52 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=16.2
Q ss_pred ccccccC-cccCcccccchhccchhcccc
Q 000960 752 LVELPFG-WQPGIQEGTADWDEDWDKLED 779 (1208)
Q Consensus 752 ~vElp~g-~~~~~qe~a~~w~edw~~~~d 779 (1208)
..+||.- .+.|+---+.+-++ |..+..
T Consensus 453 l~~l~~~a~~~Gv~s~~~L~~r-f~~v~~ 480 (582)
T PF09731_consen 453 LSSLPPEAAQRGVPSEAQLRNR-FERVAP 480 (582)
T ss_pred HHhcCHHHhhCCCCCHHHHHHH-HHHHHH
Confidence 4456553 34477777777776 766644
No 416
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=91.74 E-value=0.05 Score=65.82 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEI-TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT 691 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel-~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~ 691 (1208)
+++.+||+||..+++++....+|++|-+...---++.++.+ .+-.+.|..-.++||++-+++-.|++.+-.+|...|.+
T Consensus 369 ~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeE 448 (495)
T PF12004_consen 369 KEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEE 448 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhh
Confidence 55566888988888877766666655332111111111111 11111223333456666666666666666666666655
Q ss_pred HHH
Q 000960 692 FRD 694 (1208)
Q Consensus 692 LqD 694 (1208)
|+.
T Consensus 449 Lrr 451 (495)
T PF12004_consen 449 LRR 451 (495)
T ss_dssp ---
T ss_pred hhh
Confidence 543
No 417
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=91.74 E-value=2.7 Score=50.52 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=4.2
Q ss_pred cccccCcc
Q 000960 753 VELPFGWQ 760 (1208)
Q Consensus 753 vElp~g~~ 760 (1208)
.-|-.||.
T Consensus 390 ~~L~RGYa 397 (432)
T TIGR00237 390 EVLARGYS 397 (432)
T ss_pred hhhcCceE
Confidence 33555665
No 418
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.72 E-value=1.2 Score=41.48 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=33.5
Q ss_pred hhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 649 RLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 708 (1208)
Q Consensus 649 eLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~k 708 (1208)
.|.+..++|++|..|-+.|..+.-.....|..|..++.+.|..+.++..++..++..|..
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666555544445555555555555555555555555555555554
No 419
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.72 E-value=5.4 Score=48.73 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=20.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 651 NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 702 (1208)
Q Consensus 651 nel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eL 702 (1208)
..+..+|..+++++..++.|.|+....+.+-..+-...++.+..+|.|+.|+
T Consensus 236 skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 236 SKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333322222222222234444444444443
No 420
>PF13166 AAA_13: AAA domain
Probab=91.71 E-value=3.9 Score=51.30 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHH
Q 000960 677 QSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (1208)
Q Consensus 677 QvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~EL 732 (1208)
.+..++..+..++..+..++.++..++..+.+++.+. .+.+..++.||..|..+
T Consensus 418 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 418 EIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL--KNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHh
Confidence 3444455555555556666666666666655555433 22356666677666655
No 421
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=91.69 E-value=2 Score=53.24 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 626 REKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQA 705 (1208)
Q Consensus 626 ReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaA 705 (1208)
+++++.|++++.+|...+ ++.. .+|.+.+++++.|+++++..+.++..+...| +....+++.++.+|++|
T Consensus 190 ~~~~~~yk~~v~~i~~~~------ik~p-~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l---~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKD------IKNP-LELQKIKEEFDKLKKEGKADKQKIKSAKNDL---QNDKKQLKADLAELKKA 259 (555)
T ss_pred chhHHHHHHHHHHHHhcc------CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHhc
Confidence 566677887777776531 2221 2344555566666666655555555544432 33444555555555554
Q ss_pred HH
Q 000960 706 IL 707 (1208)
Q Consensus 706 L~ 707 (1208)
-+
T Consensus 260 p~ 261 (555)
T TIGR03545 260 PQ 261 (555)
T ss_pred cH
Confidence 44
No 422
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.69 E-value=8.3 Score=48.64 Aligned_cols=141 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHH----------
Q 000960 597 EQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL---------- 666 (1208)
Q Consensus 597 e~~~l~~~~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~---------- 666 (1208)
|.+.+.+ ++...--.+..++..|.+++++.+..-++.+.|.......-++|+.+++++.....+++.
T Consensus 500 Ekk~laQ---E~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r 576 (786)
T PF05483_consen 500 EKKQLAQ---ETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENAR 576 (786)
T ss_pred HHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 000960 667 ----------------------LAKKYEEKYKQSGDVASK-------LTLEEATFRDIQEKKMELYQAILKMEGESGDGT 717 (1208)
Q Consensus 667 ----------------------Lr~EyEee~KQvseLess-------LA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~ 717 (1208)
||++++++.|-+.+|+.. ++..-.++..+..++..|+..+..+...-+...
T Consensus 577 ~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~ 656 (786)
T PF05483_consen 577 SIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEET 656 (786)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 718 LQQHADHIQNELEELVKILNDRCK 741 (1208)
Q Consensus 718 LQEr~~~in~kL~ELEKlL~E~rk 741 (1208)
+.|+..|..+-.--++|+.|--+
T Consensus 657 -~~~~keie~K~~~e~~L~~EveK 679 (786)
T PF05483_consen 657 -DKYQKEIESKSISEEELLGEVEK 679 (786)
T ss_pred -HHHHHHHHHhhhhHHHHHHHHHH
No 423
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.68 E-value=0.051 Score=69.80 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh--------------hcHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS--------------GDKREVELLAKKYEEKYKQ 677 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelS--------------elKREiQ~Lr~EyEee~KQ 677 (1208)
++++..++.++..++.+++-......++...+.+...++.++..++. .+..+++.|+..++++.+.
T Consensus 179 Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~ 258 (859)
T PF01576_consen 179 EKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRA 258 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhh
Confidence 34455555555555555555555555555444444444444443333 3344444444444455444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000960 678 SGDVASKLTLEEATFRDIQEKKM 700 (1208)
Q Consensus 678 vseLessLA~~Ea~LqDiQ~Q~~ 700 (1208)
...|+.++..++..+..+++++.
T Consensus 259 k~~L~~~l~~le~e~~~L~eqle 281 (859)
T PF01576_consen 259 KQALEKQLRQLEHELEQLREQLE 281 (859)
T ss_dssp -----------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444333
No 424
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.65 E-value=1 Score=49.85 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 621 EILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 700 (1208)
Q Consensus 621 EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~ 700 (1208)
+++++++..+.++.|++|++..+...-++|.++..++.+++..+++|+.+ .+.|++.+...++..-++..+..
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E-------~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE-------NSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhchhHHHHHHHHHH
Q ss_pred HHHHHH
Q 000960 701 ELYQAI 706 (1208)
Q Consensus 701 eLeaAL 706 (1208)
+|+..+
T Consensus 202 ELe~~~ 207 (290)
T COG4026 202 ELEPGV 207 (290)
T ss_pred Hhcccc
No 425
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=91.65 E-value=5.4 Score=49.36 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 000960 633 STKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 677 (1208)
Q Consensus 633 rsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQ 677 (1208)
+..|.+++.....+.++++++.+.+.+|.-+.+...++.+.+.+|
T Consensus 469 q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~ 513 (607)
T KOG0240|consen 469 QQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQ 513 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhh
Confidence 333333333444455555555555555555555554444444443
No 426
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=91.64 E-value=3.8 Score=43.99 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 620 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT 691 (1208)
Q Consensus 620 ~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~ 691 (1208)
.+++.+..+|..|+.|.|+|+...+-.+.+++++...|+ ++.++.++++-.|.|+.-.++|..+.+.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666777777777777777777777666654332 2333333333334444444444444333
No 427
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=91.63 E-value=0.21 Score=34.65 Aligned_cols=25 Identities=40% Similarity=0.691 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCCCCcCHHHHHHHH
Q 000960 475 LKQVWDLSDQDNDGMLSLKEFCTAL 499 (1208)
Q Consensus 475 L~qIW~LaD~D~DGkLdfdEFvvAM 499 (1208)
+..+++.+|.+++|.|+++||+.+|
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 5567777777777777777777544
No 428
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=91.63 E-value=2.4 Score=50.65 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 000960 667 LAKKYEEKYKQSGDVASKLTLE--EATFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 667 Lr~EyEee~KQvseLessLA~~--Ea~LqDiQ~Q~~eLeaAL~ 707 (1208)
++..+++..+++..+..+|... ...|...+.++.+|+..|.
T Consensus 325 ~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~ 367 (438)
T PRK00286 325 LERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLR 367 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444322 3334444444444444443
No 429
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=7.8 Score=47.79 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHH-HHHHHHHHHH
Q 000960 668 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHA-DHIQNELEEL 732 (1208)
Q Consensus 668 r~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~-~~in~kL~EL 732 (1208)
.+|++---+++..|++.|+.+.++.+.-|.-+.++.+||.| ..++ |++|+ +.||.-|.+|
T Consensus 661 k~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K--~~Y~---l~~~Q~~~iqsiL~~L 721 (741)
T KOG4460|consen 661 KKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPK--PTYI---LSAYQRKCIQSILKEL 721 (741)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--Cccc---ccHHHHHHHHHHHHHH
Confidence 34444444778888888888888887744446667777766 4442 23333 3455555555
No 430
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=91.58 E-value=17 Score=39.72 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000960 692 FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYG 744 (1208)
Q Consensus 692 LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq~G 744 (1208)
++.++..+..+.+++.++.+.. .+..+++..++.++.++++..+.+++.|-
T Consensus 117 ~~~~~~~L~k~~~~~~Kl~~~~--~s~~~K~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 117 WQSAESELSKKKAQLEKLKRQG--KTQQEKLNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666766432 23367888888888888777777776543
No 431
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=91.56 E-value=0.28 Score=51.21 Aligned_cols=55 Identities=27% Similarity=0.327 Sum_probs=46.3
Q ss_pred HHHhhCCCCCCcccHHHHHHHH---HhCCCCHHHHH----HHHHhccCCCCCCCCHHHHHHH
Q 000960 15 YFRRADLDGDGQISGAEAVAFF---QGSNLPKQVLA----QVWSHADQRKAGFLNRAEFFNA 69 (1208)
Q Consensus 15 vF~~~D~D~DGkIsg~Ea~~fL---~~SgLP~~~L~----qIW~LAD~d~DG~LdrdEF~vA 69 (1208)
.|+++|-|+|+.|...++...+ .+.+|+.+++. +|.+.||.|+||.|++.||-..
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 5889999999999998886654 55799998765 5677899999999999999654
No 432
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.49 E-value=14 Score=40.60 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=17.6
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 657 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 689 (1208)
Q Consensus 657 lSelKREiQ~Lr~EyEee~KQvseLessLA~~E 689 (1208)
+..+.+..+.+.++.+.-..+++.|..+|..+|
T Consensus 125 lk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE 157 (205)
T KOG1003|consen 125 LKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE 157 (205)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence 334444444455555555566666666665544
No 433
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=91.48 E-value=1.7 Score=45.12 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=24.6
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 653 ITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 698 (1208)
Q Consensus 653 l~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q 698 (1208)
..+.|..|+.|+.+.+..|+..++.+.+|+..+...+..+++...+
T Consensus 39 ~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 39 NLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555555555555555555555555555555555544444
No 434
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.41 E-value=11 Score=40.11 Aligned_cols=60 Identities=15% Similarity=0.340 Sum_probs=37.3
Q ss_pred HHHHHHhhhcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 651 NEITERVSGDKREVEL-LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 651 nel~eelSelKREiQ~-Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
...+.+|.+.-+.++. -+.++-+.|-+...++-+|++...+-++|+.+-.+|+.-|..+.
T Consensus 58 r~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 58 RQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443 24445555666677888888887777777777777777776644
No 435
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.40 E-value=6.7 Score=46.94 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=41.2
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-HHHH
Q 000960 656 RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE-ELVK 734 (1208)
Q Consensus 656 elSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~-ELEK 734 (1208)
+.+.+++.|+.|+.|++--.++|+..|. ..|++++++.+.-..+ +|...++|.+|. |||+
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~l~~Aqk----------~~~ek~~qy~~Ee~~~---------reen~rlQrkL~~e~er 307 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTYLSRAQK----------SYQEKLMQYRAEEVDH---------REENERLQRKLINELER 307 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHHH
Confidence 4557888888888888888777766333 3344555444443332 333344555555 5543
Q ss_pred HHHHHHHhhCcccCcc
Q 000960 735 ILNDRCKQYGLRAKPT 750 (1208)
Q Consensus 735 lL~E~rkq~GL~aK~~ 750 (1208)
++-.|+++.=+-|..
T Consensus 308 -Realcr~lsEsessl 322 (552)
T KOG2129|consen 308 -REALCRMLSESESSL 322 (552)
T ss_pred -HHHHHHHhhhhhHHH
Confidence 334455554443333
No 436
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=91.39 E-value=5.6 Score=45.79 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=6.6
Q ss_pred HHhhhcHHHHHHHHHH
Q 000960 655 ERVSGDKREVELLAKK 670 (1208)
Q Consensus 655 eelSelKREiQ~Lr~E 670 (1208)
.++...+.+++..+.+
T Consensus 121 ~~i~~a~~~l~~a~~~ 136 (346)
T PRK10476 121 EQVERARANAKLATRT 136 (346)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 437
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.36 E-value=7.3 Score=45.51 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=15.0
Q ss_pred CcccHHHHHHHHHHHHHHH
Q 000960 714 GDGTLQQHADHIQNELEEL 732 (1208)
Q Consensus 714 eda~LQEr~~~in~kL~EL 732 (1208)
||-.|+||+.+++.+.+-+
T Consensus 197 ENRyL~erl~q~qeE~~l~ 215 (319)
T PF09789_consen 197 ENRYLKERLKQLQEEKELL 215 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4578999999999887744
No 438
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=91.35 E-value=5.8 Score=41.84 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000960 691 TFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~ 707 (1208)
.+++++.+..++--.+.
T Consensus 131 a~~~l~~qi~~la~~~A 147 (174)
T PRK07352 131 VIAQLRREAAELAIAKA 147 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555544443333
No 439
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=91.30 E-value=10 Score=38.73 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=8.9
Q ss_pred Ccccccchhccchhcc
Q 000960 762 GIQEGTADWDEDWDKL 777 (1208)
Q Consensus 762 ~~qe~a~~w~edw~~~ 777 (1208)
.++...-...+.|+.|
T Consensus 183 ~~~~~l~~l~~~~~~l 198 (213)
T cd00176 183 EIEEKLEELNERWEEL 198 (213)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555556665
No 440
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=91.30 E-value=5 Score=47.58 Aligned_cols=53 Identities=26% Similarity=0.409 Sum_probs=38.8
Q ss_pred HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 654 TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAI 706 (1208)
Q Consensus 654 ~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL 706 (1208)
-+++..++||++-|..+|-+++=.++.|..++...+..|++-|..-++|.+-=
T Consensus 420 leelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHN 472 (593)
T KOG4807|consen 420 LEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHN 472 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35566788888888888888887778888887777777777776666555433
No 441
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=91.30 E-value=0.34 Score=64.01 Aligned_cols=66 Identities=12% Similarity=0.333 Sum_probs=58.6
Q ss_pred CcccHHHHHHHHHhhCCCCCCcccHHHHHHHHHhC---------CCCHHHHHHHHHhccCCCCCCCCHHHHHHHH
Q 000960 5 TATNSDLFEAYFRRADLDGDGQISGAEAVAFFQGS---------NLPKQVLAQVWSHADQRKAGFLNRAEFFNAL 70 (1208)
Q Consensus 5 t~Ee~~~Y~~vF~~~D~D~DGkIsg~Ea~~fL~~S---------gLP~~~L~qIW~LAD~d~DG~LdrdEF~vAM 70 (1208)
|.+....|.-+|+.+|.+.+|+++-.+++-+|..- |-|..++..|.+++|++++||+++.+|+.-|
T Consensus 2248 tEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2248 TEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 55677889999999999999999999999999874 4466799999999999999999999997654
No 442
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=91.22 E-value=1.8 Score=49.89 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELI 640 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELq 640 (1208)
|+..|..+++.+.+-++.+--||-|.+..-
T Consensus 184 Ae~eV~~~eerv~kAs~~L~~yr~kngvfd 213 (372)
T COG3524 184 AEEEVQKAEERVKKASNDLTDYRIKNGVFD 213 (372)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhcCccC
Confidence 344555555555555555555555544433
No 443
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=91.20 E-value=7.1 Score=38.68 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~L 692 (1208)
.|+.+++.......++-+.+..+-++|.....+.+.=|++...+ ..+-.+.++.+.+.....+..|..+.+.|
T Consensus 18 ~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k-------~~rA~k~a~~e~k~~~~k~~ei~~l~~~l 90 (126)
T PF13863_consen 18 TKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAK-------RERAEKRAEEEKKKKEEKEAEIKKLKAEL 90 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555555544444332 22223333333444444444444444445
Q ss_pred HHHHHHHHHHHHHHHH
Q 000960 693 RDIQEKKMELYQAILK 708 (1208)
Q Consensus 693 qDiQ~Q~~eLeaAL~k 708 (1208)
..|+..+..++..|..
T Consensus 91 ~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 91 EELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554443
No 444
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.17 E-value=0.062 Score=67.65 Aligned_cols=144 Identities=14% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHH--
Q 000960 598 QESLNAKLKEA-TEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK-- 674 (1208)
Q Consensus 598 ~~~l~~~~qEa-tEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee-- 674 (1208)
+..+..+.+.. .|....+.+....+..+++++..|+.+++.++.....++.++.++++++..++++++....++++-
T Consensus 141 k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~ 220 (722)
T PF05557_consen 141 KRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQA 220 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHHH
Q 000960 675 --------YKQSGDVASKLTLEEATF-------------RDIQEKKMELYQAILKMEGESGD-GTLQQHADHIQNELEEL 732 (1208)
Q Consensus 675 --------~KQvseLessLA~~Ea~L-------------qDiQ~Q~~eLeaAL~kl~~e~ed-a~LQEr~~~in~kL~EL 732 (1208)
...+..|+..|...+... ++++....++...|..++....+ ..|+|..+-++.+|..+
T Consensus 221 ~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~ 300 (722)
T PF05557_consen 221 SQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERL 300 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 000960 733 VKILNDRCK 741 (1208)
Q Consensus 733 EKlL~E~rk 741 (1208)
|++..+.+.
T Consensus 301 E~~~~el~~ 309 (722)
T PF05557_consen 301 EELEEELAE 309 (722)
T ss_dssp ---------
T ss_pred HHHHHHHHH
No 445
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.10 E-value=15 Score=42.80 Aligned_cols=83 Identities=16% Similarity=0.288 Sum_probs=51.4
Q ss_pred hhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Q 000960 647 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ 726 (1208)
Q Consensus 647 ~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in 726 (1208)
.+.+.+...-|+.-+.-+...++|++.+.|.+..|+.. -..++.+...-..+|..|..+. ..+.+.+..+.
T Consensus 222 ~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE-------~~~~k~k~e~~n~~l~~m~eer--~~~~~~~~~~~ 292 (309)
T PF09728_consen 222 SEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKE-------NQTWKSKWEKSNKALIEMAEER--QKLEKELEKLK 292 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHH
Confidence 33444444445555556666666666666666665443 3455666666667777766555 45667777777
Q ss_pred HHHHHHHHHHHH
Q 000960 727 NELEELVKILND 738 (1208)
Q Consensus 727 ~kL~ELEKlL~E 738 (1208)
.++..|++|+..
T Consensus 293 ~k~~kLe~LcRa 304 (309)
T PF09728_consen 293 KKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 446
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=91.09 E-value=4.8 Score=43.77 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 000960 719 QQHADHIQNELE 730 (1208)
Q Consensus 719 QEr~~~in~kL~ 730 (1208)
+.|.+.|+.+|.
T Consensus 150 k~Rve~L~~QL~ 161 (188)
T PF05335_consen 150 KRRVEELQRQLQ 161 (188)
T ss_pred HHHHHHHHHHHH
Confidence 445555554444
No 447
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=91.04 E-value=13 Score=42.34 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 000960 692 FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE-ELVKILNDRCKQ 742 (1208)
Q Consensus 692 LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~-ELEKlL~E~rkq 742 (1208)
+-.+=+=+.+.+.+|..+.+=.+-..|..+++.+...++ .|+..|.+-|..
T Consensus 143 y~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~ 194 (291)
T PF10475_consen 143 YPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQD 194 (291)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555555554444444666666666666666 556666666663
No 448
>COG5293 Predicted ATPase [General function prediction only]
Probab=91.00 E-value=5.5 Score=48.21 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 000960 690 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDR 739 (1208)
Q Consensus 690 a~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~ 739 (1208)
++.++==++..+...+|.+-++++ ||++|..|+.+|.+++-.+.+.
T Consensus 316 g~Vkk~~e~v~~F~r~~~e~R~~y----l~~ei~~i~~dLk~~n~~~~~l 361 (591)
T COG5293 316 GQVKKDFEHVIAFNRAITEERHDY----LQEEIAEIEGDLKEVNAELDDL 361 (591)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555666666644444 7888888887777665333333
No 449
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=90.99 E-value=3.5 Score=46.84 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 000960 632 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA 682 (1208)
Q Consensus 632 yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLe 682 (1208)
++.-.|+++...+...+.||++....++|...||+-+.|||...|-+..|+
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444445555555555555555555555555555555444444
No 450
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.99 E-value=1.7 Score=52.74 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=9.5
Q ss_pred ccccCCCCCCCCcc
Q 000960 957 SMFGLDDFNIKPIK 970 (1208)
Q Consensus 957 ~~f~~~~~~~~p~~ 970 (1208)
.=+=||++||+=|-
T Consensus 346 LGWiSD~~GiPCIs 359 (472)
T TIGR03752 346 LGWISDPYGIPCIS 359 (472)
T ss_pred ceeecCCCCCCCCC
Confidence 33667888887764
No 451
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=90.83 E-value=4.5 Score=52.77 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=19.7
Q ss_pred cccCcccHHHHHHHHHHHHH---HHH----------HHHHHHHHh-hCcccCccc
Q 000960 711 GESGDGTLQQHADHIQNELE---ELV----------KILNDRCKQ-YGLRAKPTL 751 (1208)
Q Consensus 711 ~e~eda~LQEr~~~in~kL~---ELE----------KlL~E~rkq-~GL~aK~~~ 751 (1208)
.+++...+.+.-..|+.-|+ +|+ |.+++.-|. .-|++|+.+
T Consensus 1266 nqme~~tf~~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQKA 1320 (1439)
T PF12252_consen 1266 NQMEVKTFEEQEKEIQQNLQLLDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQKA 1320 (1439)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555553333 343 444444442 226667765
No 452
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=12 Score=41.04 Aligned_cols=104 Identities=19% Similarity=0.326 Sum_probs=63.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---hhhcHHHHHHHHHHHHHHHHHHHHHH---
Q 000960 609 TEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITER---VSGDKREVELLAKKYEEKYKQSGDVA--- 682 (1208)
Q Consensus 609 tEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~ee---lSelKREiQ~Lr~EyEee~KQvseLe--- 682 (1208)
.-+++|+..|..||++.+.|| ++.|.+...+.++++ +-.+ ++.||+++.++....
T Consensus 29 dSve~KIskLDaeL~k~~~Qi------------~k~R~gpaq~~~KqrAlrVLkQ-------KK~yE~q~d~L~~QsfNM 89 (218)
T KOG1655|consen 29 DSVEKKISKLDAELCKYKDQI------------KKTRPGPAQNALKQRALRVLKQ-------KKMYENQKDSLDQQSFNM 89 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHH------------HhcCCCcchhHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccH
Confidence 345677888888887766653 344666555555432 2222 334555544443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHH
Q 000960 683 SKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 732 (1208)
Q Consensus 683 ssLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~EL 732 (1208)
.+...+-..|+|.|.-...|+.+.-+|+.++-.-+ =+.|+.||-++.+|
T Consensus 90 eQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvn-Id~IedlQDem~Dl 138 (218)
T KOG1655|consen 90 EQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVN-IDKIEDLQDEMEDL 138 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHH
Confidence 22233445699999999999999998887775555 45666666666655
No 453
>COG5283 Phage-related tail protein [Function unknown]
Probab=90.76 E-value=5.5 Score=52.83 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 633 STKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 695 (1208)
Q Consensus 633 rsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDi 695 (1208)
.-+|+.|........--+.++++|+.++.|.++..++.|++--+|...++..++.+-+++--.
T Consensus 56 ~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a 118 (1213)
T COG5283 56 KGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVA 118 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 345666666666666667777888888888888888888888777777777766554444433
No 454
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.66 E-value=4.3 Score=49.83 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=20.3
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 650 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 685 (1208)
Q Consensus 650 Lnel~eelSelKREiQ~Lr~EyEee~KQvseLessL 685 (1208)
|+++++|...++.+++.|+.+|++...++.+++.++
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~ 311 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL 311 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666655555555555443
No 455
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.66 E-value=19 Score=41.21 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=12.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCS 633 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yr 633 (1208)
.++++.+++.+|.+.++++.++.
T Consensus 86 Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 86 LQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555433
No 456
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.65 E-value=5.4 Score=50.61 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHH
Q 000960 629 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK 670 (1208)
Q Consensus 629 iE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~E 670 (1208)
.+..+.++.+++....++..+|+..++.|.++|.++++|.++
T Consensus 522 ~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~ 563 (809)
T KOG0247|consen 522 EKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKE 563 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 335566666677777888888999999999999998886655
No 457
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=90.58 E-value=2.5 Score=46.04 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 675 YKQSGDVASKLTLEEATFRDIQEKKMELYQAI 706 (1208)
Q Consensus 675 ~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL 706 (1208)
.+++.+|+.....+.++|+++|.|+.+|+.+.
T Consensus 153 r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 153 RQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444555555555554443
No 458
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=90.52 E-value=5.2 Score=50.01 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000960 618 LEKEILTSREKIQFCSTKMQELI 640 (1208)
Q Consensus 618 lE~EI~ksReKiE~yrsKmQELq 640 (1208)
+...|+..--+++.|++++++.+
T Consensus 316 ln~liahah~rvdql~~~l~d~k 338 (657)
T KOG1854|consen 316 LNKLIAHAHTRVDQLQKELEDQK 338 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445666667777777777744
No 459
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.51 E-value=11 Score=48.21 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 000960 651 NEITERVSGDKREVELLAKKYEEKYKQSGD 680 (1208)
Q Consensus 651 nel~eelSelKREiQ~Lr~EyEee~KQvse 680 (1208)
.++-+-|..+|.|-++|+..+.++-+++-+
T Consensus 458 eellk~~e~q~~Enk~~~~~~~ekd~~l~~ 487 (861)
T PF15254_consen 458 EELLKVIENQKEENKRLRKMFQEKDQELLE 487 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555666666666666665554443
No 460
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=90.49 E-value=8.8 Score=41.95 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=25.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 651 NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 651 nel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.+...|+..|+.+++.-+++-.++...-.++.+..+.++.+.+.+|.|+++|..++..|+
T Consensus 122 a~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 122 AESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433332222222233333344445555555555555555555444
No 461
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=90.35 E-value=17 Score=40.13 Aligned_cols=102 Identities=15% Similarity=0.262 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 631 FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 631 ~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.|+.++..|...-..|++.-+++..||.+.+.--+.|=.|-+++..+...-.-+ +.-+.+|+..+.++.+|-.++.+.+
T Consensus 61 dLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR-~~S~~kL~~tr~~Y~~L~~aM~~Ae 139 (201)
T PF11172_consen 61 DLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLR-RASEQKLAETRRRYAQLIKAMRRAE 139 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666777777777777777777777777777777665432111 1123445555555555555555433
Q ss_pred cccCc---------------------ccHHHHHHHHHHHHHHHH
Q 000960 711 GESGD---------------------GTLQQHADHIQNELEELV 733 (1208)
Q Consensus 711 ~e~ed---------------------a~LQEr~~~in~kL~ELE 733 (1208)
..+.- +.||-+...|+.++..|.
T Consensus 140 ~km~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li 183 (201)
T PF11172_consen 140 SKMQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLI 183 (201)
T ss_pred HhcChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 556777777777766553
No 462
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.35 E-value=4.3 Score=44.10 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=7.5
Q ss_pred ccHHHHHHHHHHHHH
Q 000960 716 GTLQQHADHIQNELE 730 (1208)
Q Consensus 716 a~LQEr~~~in~kL~ 730 (1208)
.-|+.++..|+.++.
T Consensus 162 ~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 162 SRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555555554
No 463
>PRK11546 zraP zinc resistance protein; Provisional
Probab=90.34 E-value=1.4 Score=45.92 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 000960 611 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (1208)
Q Consensus 611 a~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~ 675 (1208)
+++.++++..+...+|+++---+..|+.|.....-- .+.|.++..||..||.++.++.
T Consensus 52 ~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD-------~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 52 WQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPD-------SSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777877555555555543222222 2334555555555555554444
No 464
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=90.32 E-value=29 Score=42.76 Aligned_cols=12 Identities=8% Similarity=0.404 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 000960 719 QQHADHIQNELE 730 (1208)
Q Consensus 719 QEr~~~in~kL~ 730 (1208)
+|.+..+..+++
T Consensus 146 ~e~l~~f~~~v~ 157 (475)
T PRK10361 146 REQLDGFRRQVQ 157 (475)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 465
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=90.31 E-value=0.083 Score=64.01 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 661 KREVELLAKKYEEKYKQSGDVASKLTLEEAT 691 (1208)
Q Consensus 661 KREiQ~Lr~EyEee~KQvseLessLA~~Ea~ 691 (1208)
|||-.+++.-++.+.+-|.+.+.+|+.+++.
T Consensus 450 rre~~~m~~~~~~kqrii~aQ~~~i~~Ldaa 480 (495)
T PF12004_consen 450 RREHAEMQAVLDHKQRIIDAQEKRIAALDAA 480 (495)
T ss_dssp -------------------------------
T ss_pred hhhHHHHhcccccchHHHHHhhhhccccccc
Confidence 3333334444555555555656665555443
No 466
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=90.30 E-value=7.1 Score=48.55 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000960 692 FRDIQEKKMELYQAILKM 709 (1208)
Q Consensus 692 LqDiQ~Q~~eLeaAL~kl 709 (1208)
+-++-..+.+++..|..+
T Consensus 124 ~~~Aa~~L~~~~~~L~~l 141 (593)
T PF06248_consen 124 YLDAADLLEELKSLLDDL 141 (593)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 555555555555555554
No 467
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=90.19 E-value=5.5 Score=45.10 Aligned_cols=93 Identities=22% Similarity=0.229 Sum_probs=46.9
Q ss_pred hhHHHhhhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 000960 585 LEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEI------------LTSREKIQFCSTKMQELILYKSRCDNRLNE 652 (1208)
Q Consensus 585 ldd~ll~q~s~ee~~~l~~~~qEatEa~KKl~elE~EI------------~ksReKiE~yrsKmQELqlqksR~~neLne 652 (1208)
|-..|++-+.++.-.+|+.++.+ ..+|+.+++++| ..+..|--.+...-+||=.+. ++.++-+
T Consensus 166 lR~~llDPAinl~F~rlK~ele~---tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~--s~Gria~ 240 (330)
T KOG2991|consen 166 LRSTLLDPAINLFFLRLKGELEQ---TKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQA--SEGRIAE 240 (330)
T ss_pred HHHHhhChHHHHHHHHHHHHHHH---HHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhh--hcccHHH
Confidence 33445555667777777775533 348898988887 223333222222223332222 2444555
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 000960 653 ITERVSGDKREVELLAKKYEEKYKQSGDVA 682 (1208)
Q Consensus 653 l~eelSelKREiQ~Lr~EyEee~KQvseLe 682 (1208)
+..+|+=+|..-++|+...++-++-+.+|-
T Consensus 241 Le~eLAmQKs~seElkssq~eL~dfm~eLd 270 (330)
T KOG2991|consen 241 LEIELAMQKSQSEELKSSQEELYDFMEELD 270 (330)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Confidence 555555555544455554444444444433
No 468
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=90.19 E-value=7.6 Score=41.43 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000960 691 TFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~ 707 (1208)
.+++++.+..+|--+++
T Consensus 136 a~~~l~~ei~~lav~~A 152 (184)
T CHL00019 136 AINQVRQQVFQLALQRA 152 (184)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555544444
No 469
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.18 E-value=3.1 Score=48.10 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHhhhcHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHH
Q 000960 650 LNEITERVSGDKREVEL---LAKKYEEKY----KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHA 722 (1208)
Q Consensus 650 Lnel~eelSelKREiQ~---Lr~EyEee~----KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~ 722 (1208)
+++++.+++++...+.. .-+++++++ =||.-|..+|.+.|..|.++|.++.+...+|.. ||++.
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr---------~K~~~ 149 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELER---------QKRAH 149 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH
Q ss_pred HHHHHHHHHHH---HHHHHHHHhhCcc
Q 000960 723 DHIQNELEELV---KILNDRCKQYGLR 746 (1208)
Q Consensus 723 ~~in~kL~ELE---KlL~E~rkq~GL~ 746 (1208)
..|+.++++|. +-+.+.++.+||+
T Consensus 150 d~L~~e~~~Lre~L~~rdeli~khGlV 176 (302)
T PF09738_consen 150 DSLREELDELREQLKQRDELIEKHGLV 176 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCee
No 470
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=90.15 E-value=16 Score=39.87 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 692 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~L 692 (1208)
..|.+|+.++.+-..-++.....++.-+.-.............++..|+.-++..+..+++...-....+..|++...-|
T Consensus 67 ~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLL 146 (188)
T PF05335_consen 67 QIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLL 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444445555544444444444444444444445555555555554444444444333333333334
Q ss_pred HHHHHHHHHHHHHHHH
Q 000960 693 RDIQEKKMELYQAILK 708 (1208)
Q Consensus 693 qDiQ~Q~~eLeaAL~k 708 (1208)
...+.+...|...|..
T Consensus 147 eaAk~Rve~L~~QL~~ 162 (188)
T PF05335_consen 147 EAAKRRVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 471
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.12 E-value=25 Score=44.77 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 000960 631 FCSTKMQELILYKSRCDNRLNEITERV 657 (1208)
Q Consensus 631 ~yrsKmQELqlqksR~~neLnel~eel 657 (1208)
.+++|.|+++...+.+.++|++-..||
T Consensus 846 lErqQkq~iE~~Eq~h~~rlR~eakRi 872 (1187)
T KOG0579|consen 846 LERQQKQEIEDTEQAHEHRLRNEAKRI 872 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677777777777777777665443
No 472
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=90.11 E-value=4.8 Score=39.72 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 613 KKVEELEKEILTSREKIQFCSTKMQELILY 642 (1208)
Q Consensus 613 KKl~elE~EI~ksReKiE~yrsKmQELqlq 642 (1208)
.+...++.++..+..++..+..+++|..+-
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v 39 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKA 39 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555544
No 473
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=90.04 E-value=13 Score=37.85 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=18.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000960 716 GTLQQHADHIQNELEELVKILNDRCKQ 742 (1208)
Q Consensus 716 a~LQEr~~~in~kL~ELEKlL~E~rkq 742 (1208)
..++.++..|..+...|...+.++++.
T Consensus 182 ~~~~~~l~~l~~~~~~l~~~~~~~~~~ 208 (213)
T cd00176 182 EEIEEKLEELNERWEELLELAEERQKK 208 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776666666554
No 474
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=90.04 E-value=7.4 Score=44.45 Aligned_cols=12 Identities=8% Similarity=0.193 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 000960 692 FRDIQEKKMELY 703 (1208)
Q Consensus 692 LqDiQ~Q~~eLe 703 (1208)
++..+.++..+.
T Consensus 215 l~~~~~~L~~l~ 226 (319)
T PF02601_consen 215 LQRKRQRLQNLS 226 (319)
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 475
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=89.98 E-value=6.3 Score=47.41 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 000960 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK 676 (1208)
Q Consensus 615 l~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~K 676 (1208)
++.+.+|+....++++.|++=++.|+.+.... +-.++..++.++++|-++|-++++...+
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~ 204 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEK 204 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666665555554433321 2244444555555555555555444443
No 476
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=89.97 E-value=5.3 Score=47.85 Aligned_cols=21 Identities=33% Similarity=0.233 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 000960 690 ATFRDIQEKKMELYQAILKME 710 (1208)
Q Consensus 690 a~LqDiQ~Q~~eLeaAL~kl~ 710 (1208)
.+.+||++-+.-.+.-|.+|+
T Consensus 298 eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655
No 477
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.96 E-value=2.4 Score=39.26 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 000960 617 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 675 (1208)
Q Consensus 617 elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~ 675 (1208)
.|+..+..+-.|++.+..-+..|..........|.....++.+||.|++.|++++++..
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444455555555555555555666666777778888888887766554
No 478
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=89.90 E-value=7.1 Score=50.35 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=3.2
Q ss_pred CCCCHHH
Q 000960 59 GFLNRAE 65 (1208)
Q Consensus 59 G~LdrdE 65 (1208)
+.|+-.|
T Consensus 79 ~~l~~~e 85 (771)
T TIGR01069 79 GIVKGLE 85 (771)
T ss_pred CcCChHH
Confidence 3455544
No 479
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=89.89 E-value=9.2 Score=43.66 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 000960 718 LQQHADHIQNELEEL 732 (1208)
Q Consensus 718 LQEr~~~in~kL~EL 732 (1208)
.++++..++.+|.+|
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 355666666666554
No 480
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=89.86 E-value=14 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000960 691 TFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~ 707 (1208)
.++.++..+.+|..++.
T Consensus 80 q~~~l~~~l~~l~~~~~ 96 (127)
T smart00502 80 QLESLTQKQEKLSHAIN 96 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444433333
No 481
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=89.83 E-value=3.9 Score=38.88 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 000960 623 LTSREKIQFCSTKMQELILYKSRCD 647 (1208)
Q Consensus 623 ~ksReKiE~yrsKmQELqlqksR~~ 647 (1208)
.++++++..+..+++.|...+.+|+
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~~ 32 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLRELE 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 482
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=89.81 E-value=7.3 Score=50.32 Aligned_cols=17 Identities=6% Similarity=0.286 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000960 691 TFRDIQEKKMELYQAIL 707 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~ 707 (1208)
.+++++.+..++-..|.
T Consensus 578 ~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 578 AIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 483
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=89.79 E-value=21 Score=38.12 Aligned_cols=124 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 000960 598 QESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 677 (1208)
Q Consensus 598 ~~~l~~~~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQ 677 (1208)
++.+...+++++ +.+.+.+..+.+.++++..-+.+.+++.....+..+ ....+.+.+.+.+++++..+-+.+..
T Consensus 60 ~~~I~~~l~~Ae---~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~--~~~e~~~~~a~~ea~~~~~~A~~~I~- 133 (184)
T PRK13455 60 AEGIRSELEEAR---ALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQ--AAAEQAKADLEASIARRLAAAEDQIA- 133 (184)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCcccHHHHHHHHHHHHHHHHHHHH
Q 000960 678 SGDVASKLTLEEATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELVKILN 737 (1208)
Q Consensus 678 vseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~-~e~eda~LQEr~~~in~kL~ELEKlL~ 737 (1208)
...+..+++++.+..+|--.+..-- ++.-|. +.....|+.-+++|+..|+
T Consensus 134 --------~ek~~a~~~l~~~i~~lA~~~a~kil~~~l~~--~~~~~lid~~i~~l~~~~~ 184 (184)
T PRK13455 134 --------SAEAAAVKAVRDRAVSVAVAAAADVIAKQMTA--ADANALIDEAIKEVEARLH 184 (184)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHhhhcC
No 484
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=89.70 E-value=3.4 Score=40.70 Aligned_cols=94 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHH----------------H------------
Q 000960 615 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE----------------L------------ 666 (1208)
Q Consensus 615 l~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ----------------~------------ 666 (1208)
+.++..+++.++++++.++++++.+.....+.+.-++.+ +.+.....+.+ .
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l-~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~ 79 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETL-ETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGV 79 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCE
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 667 -----LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 709 (1208)
Q Consensus 667 -----Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl 709 (1208)
+....+.-.+.+..|+.++...+..+..++.++.+|+..|+.+
T Consensus 80 ~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 80 YVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=89.68 E-value=14 Score=43.96 Aligned_cols=144 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHH
Q 000960 594 SKEEQESLNAKLKEATEADKKVEELE--------KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE 665 (1208)
Q Consensus 594 s~ee~~~l~~~~qEatEa~KKl~elE--------~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ 665 (1208)
..+....+....+....++.+++.++ .+.....++.+.++.+++.++........+++.....+......++
T Consensus 91 ~~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 170 (421)
T TIGR03794 91 QPELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFK 170 (421)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q ss_pred HHHHHHHHHH------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh--cccCcccHHHHHHHHHHHHHHHHHHH
Q 000960 666 LLAKKYEEKY------KQSGDVASKL-TLEEATFRDIQEKKMELYQAILKME--GESGDGTLQQHADHIQNELEELVKIL 736 (1208)
Q Consensus 666 ~Lr~EyEee~------KQvseLessL-A~~Ea~LqDiQ~Q~~eLeaAL~kl~--~e~eda~LQEr~~~in~kL~ELEKlL 736 (1208)
+++.-.++.. .++...+..+ ...+..++.++..+.++.++..++. ...+...++.++..+..++++++..+
T Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 171 RDRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 000960 737 N 737 (1208)
Q Consensus 737 ~ 737 (1208)
+
T Consensus 251 ~ 251 (421)
T TIGR03794 251 N 251 (421)
T ss_pred h
No 486
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=89.66 E-value=2.6 Score=43.06 Aligned_cols=109 Identities=11% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 000960 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD 715 (1208)
Q Consensus 636 mQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ed 715 (1208)
++.+...-.....-...+.++....+.+++.++++|+...+++......+ .+..++..+.++.++.+.|.+.......
T Consensus 24 ~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~l--s~~~~~~~~~~l~~~~~~l~~~~~~~~~ 101 (158)
T PF03938_consen 24 VDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATL--SEEERQKRQQELQQKEQELQQFQQQAQQ 101 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 000960 716 GTLQQHADHIQNELEELVKILNDRCKQYGLR 746 (1208)
Q Consensus 716 a~LQEr~~~in~kL~ELEKlL~E~rkq~GL~ 746 (1208)
..=+++...++.=..++.+.+.+-++..|+.
T Consensus 102 ~l~~~~~~~~~~i~~~i~~~v~~~a~~~g~~ 132 (158)
T PF03938_consen 102 QLQQEEQELLQPIQKKINKAVEEYAKENGYD 132 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe
No 487
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=89.65 E-value=22 Score=43.89 Aligned_cols=148 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHhhhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHH
Q 000960 586 EKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREV 664 (1208)
Q Consensus 586 dd~ll~q~s~ee~~~l~~~~qEatEa~KKl~elE~EI~ksReKiE-~yrsKmQELqlqksR~~neLnel~eelSelKREi 664 (1208)
+.+..-.+..|..+-+....++.. +.+.++...+..++.+++ .+++-=..|-.-+..+....+..-+.|...+.++
T Consensus 334 e~~~~ld~LqEksqile~sv~~l~---~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~ 410 (531)
T PF15450_consen 334 ETQSELDLLQEKSQILEDSVAELM---RQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEM 410 (531)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH----HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHH
Q 000960 665 EL----LAKKYEEKYKQSGDVASK------------LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNE 728 (1208)
Q Consensus 665 Q~----Lr~EyEee~KQvseLess------------LA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~k 728 (1208)
+. ++.++|+-.++|.+|..+ .+..+++..+|+.=.++|-+-|..++-..++.- ..+|.+|+.+
T Consensus 411 ~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~-~rkiaeiqg~ 489 (531)
T PF15450_consen 411 EKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNP-GRKIAEIQGK 489 (531)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-hhhHHHHHHH
Q ss_pred HH--HHHHHHH
Q 000960 729 LE--ELVKILN 737 (1208)
Q Consensus 729 L~--ELEKlL~ 737 (1208)
|+ ++.||.+
T Consensus 490 l~~~qi~kle~ 500 (531)
T PF15450_consen 490 LATNQIMKLEN 500 (531)
T ss_pred HHHHHHHHHHH
No 488
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=89.58 E-value=27 Score=35.85 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 000960 602 NAKLKEATEADKKVEEL---EKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 678 (1208)
Q Consensus 602 ~~~~qEatEa~KKl~el---E~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQv 678 (1208)
..++++.-.-..++.++ -.++..+++.++.+...-.+|....-..+.+|.+++.++.++-.+++.|+.+|++..++.
T Consensus 6 ~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~ 85 (150)
T PF07200_consen 6 TEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQ 85 (150)
T ss_dssp THHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Q 000960 679 GDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRC---KQY 743 (1208)
Q Consensus 679 seLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~r---kq~ 743 (1208)
.++ ..-=...+-++-+|....+.++.=.+|...--+..+. +..+-.++.++.|+-..|| +++
T Consensus 86 ~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d--~~~Fl~~f~~~R~~yH~R~~K~EkL 150 (150)
T PF07200_consen 86 DEL-SSNYSPDALLARLQAAASEAEEESEELAEEFLDGEID--VDDFLKQFKEKRKLYHLRRAKEEKL 150 (150)
T ss_dssp HHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHH--HHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHHHhhhccC
No 489
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=89.58 E-value=3.6 Score=41.87 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--------------------ccHHHHHHHHHHHH
Q 000960 670 KYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD--------------------GTLQQHADHIQNEL 729 (1208)
Q Consensus 670 EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ed--------------------a~LQEr~~~in~kL 729 (1208)
+++++.+|...|+++|.....+.+.+..++.+++.||..++.=.+| ..|.+|.+.|..++
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri 86 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRI 86 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhh
Q 000960 730 EELVKILNDRCKQY 743 (1208)
Q Consensus 730 ~ELEKlL~E~rkq~ 743 (1208)
+-|+|--+...+++
T Consensus 87 ~tLekQe~~l~e~l 100 (119)
T COG1382 87 KTLEKQEEKLQERL 100 (119)
T ss_pred HHHHHHHHHHHHHH
No 490
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=89.58 E-value=0.22 Score=48.96 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh-hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 627 EKIQFCSTKMQELILYKSRCDNRLNEITERV-SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQA 705 (1208)
Q Consensus 627 eKiE~yrsKmQELqlqksR~~neLnel~eel-SelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaA 705 (1208)
+++...+.+..+++..+.+.+.+|.+++..| .+.+.++..-|.+..........|+.+|.+.++.|..+|.|+.+|...
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhcccCc
Q 000960 706 ILKMEGESGD 715 (1208)
Q Consensus 706 L~kl~~e~ed 715 (1208)
+..+..+..+
T Consensus 81 ~~~~~~~~~~ 90 (100)
T PF06428_consen 81 MESMESESDD 90 (100)
T ss_dssp TTT-------
T ss_pred HHHccccccc
No 491
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.55 E-value=8.8 Score=43.90 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHhhhhcHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHhhh--hhhHHHHHHhhhcH
Q 000960 587 KHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEI--LTSREKIQ-FCSTKMQELILYKSRCD--NRLNEITERVSGDK 661 (1208)
Q Consensus 587 d~ll~q~s~ee~~~l~~~~qEatEa~KKl~elE~EI--~ksReKiE-~yrsKmQELqlqksR~~--neLnel~eelSelK 661 (1208)
|+-..+++.-+.++-+.++|+..|.++...+..+.. ++.|+.++ ..+..++++.-...|.+ .-|+-.-+.+....
T Consensus 312 ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieare 391 (445)
T KOG2891|consen 312 DDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEARE 391 (445)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 662 REVEL-LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELY 703 (1208)
Q Consensus 662 REiQ~-Lr~EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLe 703 (1208)
..... -..++..+.+.|.+|++++...|..|..++-+++++.
T Consensus 392 errkqkeeeklk~e~qkikeleek~~eeedal~~all~~qeir 434 (445)
T KOG2891|consen 392 ERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLNLQEIR 434 (445)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
No 492
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=89.52 E-value=31 Score=38.11 Aligned_cols=142 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 000960 598 QESLNAKLKEATEADKKVEELEKEIL-TSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK 676 (1208)
Q Consensus 598 ~~~l~~~~qEatEa~KKl~elE~EI~-ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~K 676 (1208)
...+..-+.+.+..-+.-..+-..|. +..+.+..|...+.+ .+..+.+.+..+...+......++..+++|+..++
T Consensus 59 ~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~---~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~ 135 (236)
T cd07651 59 KNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQ---KRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCS 135 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000960 677 QSGDVA--------SKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 743 (1208)
Q Consensus 677 QvseLe--------ssLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~rkq~ 743 (1208)
++.++. ..+.-++..|+.++......++.+...-....... ..|...+-.=++.+..+.++|.+.+
T Consensus 136 ~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~-~~~~~~~~~~~~~~Q~lEe~Ri~~l 209 (236)
T cd07651 136 KINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELN-EIWNREWKAALDDFQDLEEERIQFL 209 (236)
T ss_pred hHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF15456 Uds1: Up-regulated During Septation
Probab=89.50 E-value=4.4 Score=41.42 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhcccCcccHHHHHH
Q 000960 655 ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI-----------QEKKMELYQAILKMEGESGDGTLQQHAD 723 (1208)
Q Consensus 655 eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~LqDi-----------Q~Q~~eLeaAL~kl~~e~eda~LQEr~~ 723 (1208)
+|+.++|+|+..|...|+...+.++ |+.++.++-..|..+ .+...+-+++|.. +..+++
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~---------~~rk~e 91 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAE---------SDRKCE 91 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHH---------HHhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 000960 724 HIQNELEELVKILNDRCKQY 743 (1208)
Q Consensus 724 ~in~kL~ELEKlL~E~rkq~ 743 (1208)
++..+|..+|+-+.+.+++.
T Consensus 92 e~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 92 ELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 494
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=89.49 E-value=13 Score=46.24 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHH
Q 000960 591 DQLSKEEQESLNAKLKEATEADKKVEE-LEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK 669 (1208)
Q Consensus 591 ~q~s~ee~~~l~~~~qEatEa~KKl~e-lE~EI~ksReKiE~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~ 669 (1208)
.++.-.+...+...+.+......++.. .+.+...+.+.++.+.+|+-+...+.....+....+++++..+.+-+..-+.
T Consensus 384 e~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~ 463 (607)
T KOG0240|consen 384 EDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRR 463 (607)
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc---ccHHHHHHHHHHHHHHHH----HHHHHHHHh
Q 000960 670 KYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD---GTLQQHADHIQNELEELV----KILNDRCKQ 742 (1208)
Q Consensus 670 EyEee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ed---a~LQEr~~~in~kL~ELE----KlL~E~rkq 742 (1208)
.|+....+..++|+-....+.+.+..-..+.+|-........+.+. ++|+..+..++....... .++.+.++.
T Consensus 464 ~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~~~~~l~~~ 543 (607)
T KOG0240|consen 464 LYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQNLKSELQSLQEPSEHQSKRITELLSELRKD 543 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhHHHHHhhhhcccchhHHHHHHHHHHHhh
Q ss_pred hCcccCcccccccccCc
Q 000960 743 YGLRAKPTLLVELPFGW 759 (1208)
Q Consensus 743 ~GL~aK~~~~vElp~g~ 759 (1208)
+|..-+...+-+-+.-|
T Consensus 544 ~~~~~~~~~~~~~~~~~ 560 (607)
T KOG0240|consen 544 LGEIGWKIGTSSEKRLY 560 (607)
T ss_pred hccccccccCCccccee
No 495
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=89.49 E-value=4.3 Score=38.64 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--------------------ccHHHHHHHHHHHHHH
Q 000960 672 EEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD--------------------GTLQQHADHIQNELEE 731 (1208)
Q Consensus 672 Eee~KQvseLessLA~~Ea~LqDiQ~Q~~eLeaAL~kl~~e~ed--------------------a~LQEr~~~in~kL~E 731 (1208)
++...++..|..++...+..++++..++.+++.++..|..-.++ ..|.+++..++.+++.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhh
Q 000960 732 LVKILNDRCKQY 743 (1208)
Q Consensus 732 LEKlL~E~rkq~ 743 (1208)
|++.+....+++
T Consensus 81 l~~~~~~l~~~l 92 (106)
T PF01920_consen 81 LEKQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 496
>PRK10780 periplasmic chaperone; Provisional
Probab=89.47 E-value=5.1 Score=42.05 Aligned_cols=106 Identities=10% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccc
Q 000960 636 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEAT--FRDIQEKKMELYQAILKMEGES 713 (1208)
Q Consensus 636 mQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea~--LqDiQ~Q~~eLeaAL~kl~~e~ 713 (1208)
+|.+...--.+..--..++.+....+.+++.++.+|+...+.+..=...+...+.+ -++|+.+.+++....+.++.+.
T Consensus 31 ~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~ 110 (165)
T PRK10780 31 MGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDR 110 (165)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CcccHHHHHHHHHHHHH-HHHHHHHHHHHhhCcc
Q 000960 714 GDGTLQQHADHIQNELE-ELVKILNDRCKQYGLR 746 (1208)
Q Consensus 714 eda~LQEr~~~in~kL~-ELEKlL~E~rkq~GL~ 746 (1208)
+.|..++...|- .+.+++++-.+..|+.
T Consensus 111 -----~~~~~e~~~~i~~ki~~ai~~vak~~gy~ 139 (165)
T PRK10780 111 -----RRRSNEERNKILTRIQTAVKSVANKQGYD 139 (165)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHcCCe
No 497
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=89.46 E-value=11 Score=43.93 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---HHHHHhhhcHHHHHHHHHHH
Q 000960 595 KEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLN---EITERVSGDKREVELLAKKY 671 (1208)
Q Consensus 595 ~ee~~~l~~~~qEatEa~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLn---el~eelSelKREiQ~Lr~Ey 671 (1208)
.+|-++||. .+..+++.-.+|+.-.++-|+-.=.+..+|.+|.-+.+.+-..-+ +++-+-.+++++.|.-.+..
T Consensus 16 ~~eLEkLN~---sTDdIN~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~F 92 (426)
T KOG2008|consen 16 QGELEKLNQ---STDDINRRETELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDF 92 (426)
T ss_pred HHHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHH
Q 000960 672 EEKYKQSGDVASKLTLEEAT----------------FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKI 735 (1208)
Q Consensus 672 Eee~KQvseLessLA~~Ea~----------------LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKl 735 (1208)
|-.+.-+....+++..++.. |.+.-.+.+|.++.-.+ .+.+-+.--.+..++--++++++|.
T Consensus 93 eRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~--aE~~Has~a~~~l~l~~~~R~~ek~ 170 (426)
T KOG2008|consen 93 ERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTR--AELVHASTAARYLALMGRMRQLEKK 170 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH----hhCcccCcccccc
Q 000960 736 LNDRCK----QYGLRAKPTLLVE 754 (1208)
Q Consensus 736 L~E~rk----q~GL~aK~~~~vE 754 (1208)
+--++| ||-+++|++..+|
T Consensus 171 n~~AIkKSrpYfE~k~~~t~~le 193 (426)
T KOG2008|consen 171 NKRAIKKSRPYFELKAKYTVQLE 193 (426)
T ss_pred hHHHHhhcchHHHHHHHHHHHHH
No 498
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=89.45 E-value=19 Score=39.69 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 609 TEADKKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTL 687 (1208)
Q Consensus 609 tEa~KKl~elE~EI~ksReKiE-~yrsKmQELqlqksR~~neLnel~eelSelKREiQ~Lr~EyEee~KQvseLessLA~ 687 (1208)
.+.+..-..-+.....++.++- -+..-..++...+.++.+.+..+..++...-++++..++.|+..+++...+..++..
T Consensus 72 ~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~ 151 (251)
T cd07653 72 NEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEK 151 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHhcccCc--------ccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000960 688 EE-------ATFRDIQEKKMELYQAILKMEGESGD--------GTLQQHADHIQNELEELVKILNDRCKQY 743 (1208)
Q Consensus 688 ~E-------a~LqDiQ~Q~~eLeaAL~kl~~e~ed--------a~LQEr~~~in~kL~ELEKlL~E~rkq~ 743 (1208)
++ ..++.+++++..-..++.+.+.++.. +. +-|.+.|-.=++.+..+.++|++.+
T Consensus 152 ~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~-~~y~~~~p~~~~~~q~le~~ri~~~ 221 (251)
T cd07653 152 ADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQR-QHYSTDLPQIFDKLQELDEKRINRT 221 (251)
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhHHHHHHH
No 499
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=89.44 E-value=0.38 Score=33.28 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHH
Q 000960 440 KYTKVFVQVDIDRDGKITGEQAYNLF 465 (1208)
Q Consensus 440 ey~eaF~~fDkD~DG~ISgdELr~~f 465 (1208)
+++++|..+|.+++|+|+..|++.++
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHH
No 500
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.39 E-value=12 Score=47.46 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000960 612 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLN-EITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 690 (1208)
Q Consensus 612 ~KKl~elE~EI~ksReKiE~yrsKmQELqlqksR~~neLn-el~eelSelKREiQ~Lr~EyEee~KQvseLessLA~~Ea 690 (1208)
+..+.+.....+++.+-|+......++|..++....+++. .+++.+....+--+..+++|..+.+||+-|+.++..-|.
T Consensus 175 E~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen 254 (786)
T PF05483_consen 175 EYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKEN 254 (786)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHh
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 000960 691 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDR 739 (1208)
Q Consensus 691 ~LqDiQ~Q~~eLeaAL~kl~~e~eda~LQEr~~~in~kL~ELEKlL~E~ 739 (1208)
.++||.-.+.+-...+..|+... ....|-+...+.+-+.|...|++.
T Consensus 255 ~~kdl~~~l~es~~~~~qLeE~~--~~q~E~Lkes~~~qe~L~~eL~~~ 301 (786)
T PF05483_consen 255 KIKDLLLLLQESQDKCNQLEEKT--KEQHENLKESNEEQEHLLQELEDI 301 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHH
Done!