BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000961
         (1208 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKR|B Chain B, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of
            The Copi Vesicular Coat
          Length = 320

 Score =  268 bits (686), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/321 (43%), Positives = 196/321 (61%), Gaps = 7/321 (2%)

Query: 892  FVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGS 951
            FV PT G   +QIW   S L  +H  AG+F+TAMRLL+ Q+G+  F P K +FL  ++  
Sbjct: 3    FVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARG 62

Query: 952  HTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTE 1011
             T  +A    P +     R W ++   N  G PA+    + L ++L+  Y+ TT GKF E
Sbjct: 63   RTTYQALPCLPSMYGYPNRNWKDAGLKN--GVPAVGLKLNDLIQRLQLCYQLTTVGKFEE 120

Query: 1012 ALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQ--- 1068
            A+  F SIL ++PL+VVD+++E+ E ++LITI +EY++GL +E +R++L  + + QQ   
Sbjct: 121  AVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRI 180

Query: 1069 -ELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQ 1127
             E+AAYFTH NLQ  H+ L L  A+++ FK KN  TA  FARRLLE  P  E   +T R+
Sbjct: 181  CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQQT-RK 239

Query: 1128 VLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSV 1187
            +L A E+NPTDA QLNYD  NPF IC A++ PIYRG+    CP     + P  +GQ+C V
Sbjct: 240  ILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKV 299

Query: 1188 CDLAVVGVDASGLLCSPTQIR 1208
              +  +G D  GL  SP Q R
Sbjct: 300  TTVTEIGKDVIGLRISPLQFR 320


>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
 pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
 pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
          Length = 814

 Score =  232 bits (591), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 207/819 (25%), Positives = 359/819 (43%), Gaps = 111/819 (13%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F  +S+RVKG+ FH   PW+L +L+SG +++W+Y     +      + PVR   F   + 
Sbjct: 9   FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN 68

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
             + G DD++I+V+NY     +     H DYIR++  H   P+++S SDD T+++WNW++
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128

Query: 125 RTCIS-VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182
              +     GH H+VMC +F+PK+     S  LD+TV+VW +G                S
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---------------S 173

Query: 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNETKAWE 240
             N  L             G +RGVN+  ++  P  P +++ +DD  +K+W   +TK+  
Sbjct: 174 TPNFTL-----------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKSC- 220

Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
           V TL GHM+NVS  +FH    II+S SED ++++W+ +     +T     +R W +A+HP
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280

Query: 301 --EMNLLAAGHDSGMIVFKLERERPAFAV--------SGDSLFYAKDRF---LRYYEFST 347
               N +A+G D+G  V  L  + P  ++        SG     A D F   +R  E   
Sbjct: 281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVE 340

Query: 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV 407
           Q +   +  +  GS  +   P++L++SP    V +  D   G Y +Y           ++
Sbjct: 341 QDEPLSLQTKELGSVDV--FPQSLAHSPNGRFVTVVGD---GEYVIYT----------AL 385

Query: 408 QDAKKGLGGSAIFI---ARNRFAVLDKSSNQXXXXXXXXXXXXXSILPIAADAIFYAGTG 464
               K  G    F+     N +A++D++                  +  A D +F   +G
Sbjct: 386 AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLF---SG 442

Query: 465 NLL-CRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVA----------------L 507
            LL  +++  V  FD     ++  +     K V+WS++ E V                 L
Sbjct: 443 ALLGVKSDGFVYFFDWDNGTLVRRIDVN-AKDVIWSDNGELVMIVNTNSNGDEASGYTLL 501

Query: 508 LSKHAIIIASK-------KLVHQC--TLHE-TIRVKSGAWDDNGVFIYTT-LNHIKYCLP 556
            +K A + A+        + V +    L+E +  + SG W  + VFI+TT  N + Y + 
Sbjct: 502 FNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGD-VFIFTTATNRLNYFVG 560

Query: 557 NGDSGIIR-TLDVPIYITKVSGNTIFCLDRDGK--NRAIVIDATEYD------HVMSMIR 607
                +   T ++ +       N ++  DR+       I ++  E+        +   I 
Sbjct: 561 GKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIE 620

Query: 608 N--SQLCGQAMIA----YLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDE 661
           N    + G+  +     +L+ + + E AL+   D+  +F LAL+ G + +A     +   
Sbjct: 621 NVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESA 680

Query: 662 KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVM 721
           +  W  LG  +L++ N  +   A+    + E L  L+    N + L  + K AE      
Sbjct: 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFN 740

Query: 722 GQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQD 760
             F+     GD++    +L  +     A    S +GL D
Sbjct: 741 LAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779


>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
          Length = 604

 Score =  213 bits (543), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 251/529 (47%), Gaps = 68/529 (12%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F  +S+RVKG+ FH   PW+L +L+SG ++LW+Y     +      + PVR   F   + 
Sbjct: 9   FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
             + G DD++I+V+NY     +     H DYIR++  H   P+++S SDD T+++WNW++
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128

Query: 125 RTCIS-VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182
              +     GH H+VMC +F+PK+     S  LD+TV+VW +G                S
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---------------S 173

Query: 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNETKAWE 240
             N  L             G +RGVN+  ++  P  P +++ +DD  +K+W   +TK+  
Sbjct: 174 TPNFTL-----------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKS-C 220

Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
           V TL GHM+NVS  +FH    II+S SED ++++W+ +     +T     +R W +A+HP
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280

Query: 301 --EMNLLAAGHDSGMIVFKLERERPAFAV--------SGDSLFYAKDRF---LRYYEFST 347
               N +A+G D+G  V  L  + P  ++        SG     A D F   +R  E   
Sbjct: 281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVE 340

Query: 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV 407
           Q +   +  +  GS  +   P++L++SP    V +  D   G Y +Y           ++
Sbjct: 341 QDEPLSLQTKELGSVDV--FPQSLAHSPNGRFVTVVGD---GEYVIYT----------AL 385

Query: 408 QDAKKGLGGSAIFI---ARNRFAVLDKSSNQXXXXXXXXXXXXXSILPIAADAIFYAGTG 464
               K  G    F+     N +A++D++                  +  A D +F   +G
Sbjct: 386 AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLF---SG 442

Query: 465 NLL-CRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHA 512
            LL  +++  V  FD     ++  +     K V+WS++ E V +++ ++
Sbjct: 443 ALLGVKSDGFVYFFDWDNGTLVRRIDVN-AKDVIWSDNGELVMIVNTNS 490


>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
 pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
          Length = 310

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/320 (33%), Positives = 171/320 (53%), Gaps = 34/320 (10%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F  +S+RVKG+ FH   PW+L +L+SG ++LW+Y     +      + PVR   F   + 
Sbjct: 9   FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
             + G DD++I+V+NY     +     H DYIR++  H   P+++S SDD T+++WNW++
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128

Query: 125 RTCIS-VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182
              +     GH H+VMC +F+PK+     S  LD+TV+VW +G                S
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---------------S 173

Query: 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNETKAWE 240
             N  L             G +RGVN+  ++  P  P +++ +DD  +K+W   +TK+  
Sbjct: 174 TPNFTL-----------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKS-C 220

Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
           V TL GHM+NVS  +FH    II+S SED ++++W+ +     +T     +R W +A+HP
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280

Query: 301 --EMNLLAAGHDSGMIVFKL 318
               N +A+G D+G  V  L
Sbjct: 281 TGRKNYIASGFDNGFTVLSL 300


>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
          Length = 304

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/320 (33%), Positives = 171/320 (53%), Gaps = 34/320 (10%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F  +S+RVKG+ FH   PW+L +L+SG ++LW+Y     +      + PVR   F   + 
Sbjct: 9   FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
             + G DD++I+V+NY     +     H DYIR++  H   P+++S SDD T+++WNW++
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128

Query: 125 RTCIS-VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182
              +     GH H+VMC +F+PK+     S  LD+TV+VW +G                S
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ---------------S 173

Query: 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNETKAWE 240
             N  L             G +RGVN+  ++  P  P +++ +DD  +K+W   +TK+  
Sbjct: 174 TPNFTL-----------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY-QTKS-C 220

Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
           V TL GHM+NVS  +FH    II+S SED ++++W+ +     +T     +R W +A+HP
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280

Query: 301 --EMNLLAAGHDSGMIVFKL 318
               N +A+G D+G  V  L
Sbjct: 281 TGRKNYIASGFDNGFTVLSL 300


>pdb|3MV2|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop
 pdb|3MV2|C Chain C, Crystal Structure Of A-Cop In Complex With E-Cop
 pdb|3MV2|E Chain E, Crystal Structure Of A-Cop In Complex With E-Cop
          Length = 325

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 157/300 (52%), Gaps = 4/300 (1%)

Query: 902  SQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSA 961
            + IWI+ S L A   AAG FD A++ L++Q+G+    PLK  F +++ G  TY+ +    
Sbjct: 25   TAIWIKNSKLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCE 84

Query: 962  PVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILH 1021
                L   R ++++ S +   P   V     + EK+   YK     K   A+  F   ++
Sbjct: 85   LPAQLGYVRAYDDTVSEDQILP--YVPGLDVVNEKMNEGYKNFKLNKPDIAIECFREAIY 142

Query: 1022 TIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKD-DPVRQQELAAYFTHCNLQ 1080
             I L++VD   +     +++   +EY+LGL +EL+RR LK+ + VR  ELAAYFT   L 
Sbjct: 143  RITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLS 202

Query: 1081 MPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDAT 1140
              H   AL  AMS  FK+KN   A  FA   L+   +   +++ AR++   A+   +DA 
Sbjct: 203  PIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS-GPRAEQARKIKNKADSMASDAI 261

Query: 1141 QLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGL 1200
             +++D    F IC AT+ PIY     VS P   +++V +++ ++  +  ++ +G  ASGL
Sbjct: 262  PIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGAPASGL 321


>pdb|3MV3|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop
 pdb|3MV3|C Chain C, Crystal Structure Of A-Cop In Complex With E-Cop
 pdb|3MV3|E Chain E, Crystal Structure Of A-Cop In Complex With E-Cop
          Length = 325

 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 154/300 (51%), Gaps = 4/300 (1%)

Query: 902  SQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSA 961
            + IWI+ S L A   AAG FD A++ L++Q+G+    PLK  F +++ G  TY+ +    
Sbjct: 25   TAIWIKNSKLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCE 84

Query: 962  PVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILH 1021
                L   R ++++ S +   P   V     + EK    YK     K   A+  F   ++
Sbjct: 85   LPAQLGYVRAYDDTVSEDQILP--YVPGLDVVNEKXNEGYKNFKLNKPDIAIECFREAIY 142

Query: 1022 TIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKD-DPVRQQELAAYFTHCNLQ 1080
             I L+ VD   +     +++   +EY+LGL +EL+RR LK+ + VR  ELAAYFT   L 
Sbjct: 143  RITLLXVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRXLELAAYFTKAKLS 202

Query: 1081 MPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDAT 1140
              H   AL  A S  FK+KN   A  FA   L+   +   +++ AR++   A+   +DA 
Sbjct: 203  PIHRTNALQVAXSQHFKHKNFLQASYFAGEFLKIISS-GPRAEQARKIKNKADSXASDAI 261

Query: 1141 QLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGL 1200
             +++D    F IC AT+ PIY     VS P   +++V +++ ++  +  ++ +G  ASGL
Sbjct: 262  PIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAXISKIGAPASGL 321


>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
 pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
          Length = 577

 Score =  133 bits (335), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 153/330 (46%), Gaps = 40/330 (12%)

Query: 4   KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQ 63
           + E  S+ V+G++F      I ++     ++LW+ R G L+     H   V GV F    
Sbjct: 11  RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 69

Query: 64  PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
               S  DD  +K+WN +  + L TL GH   +R V F  +   I SASDD+T+++WN +
Sbjct: 70  QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 127

Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD-IGALRK------------- 169
           +   +  LTGH+  V   +F P    + SAS D+TV++W+  G L +             
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 187

Query: 170 -----KTVSPADD--ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG 222
                +T++ A D   ++L   N  L           L GH   V   AF P    I S 
Sbjct: 188 FSPDGQTIASASDDKTVKLWNRNGQLL--------QTLTGHSSSVRGVAFSPDGQTIASA 239

Query: 223 ADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282
           +DD+ VKLW  N      + TL GH ++V+ V F      I S S+DK++++W+   R G
Sbjct: 240 SDDKTVKLWNRNGQ---LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN---RNG 293

Query: 283 --VQTFRREHDRFWILASHPEMNLLAAGHD 310
             +QT        W +A  P+   +A+  D
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASD 323



 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 138/309 (44%), Gaps = 39/309 (12%)

Query: 1   MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
           +L      S+ V G++F      I ++     ++LW+ R G  +     H   V GV F 
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFS 353

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
                  S  DD  +K+WN +  + L TL GH   +R V F  +   I SASDD+T+++W
Sbjct: 354 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412

Query: 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
           N ++   +  LTGH+  V   +F P +  + SAS D+TV++W+                 
Sbjct: 413 N-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN----------------- 454

Query: 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240
               N  L           L GH   V   AF P    I S +DD+ VKLW  N      
Sbjct: 455 ---RNGQLL--------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ---L 500

Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG--VQTFRREHDRFWILAS 298
           + TL GH ++V  V F      I S S+DK++++W+   R G  +QT        W +A 
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAF 557

Query: 299 HPEMNLLAA 307
            P+   +A+
Sbjct: 558 SPDGQTIAS 566



 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 147/325 (45%), Gaps = 24/325 (7%)

Query: 1   MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
           +L      S+ V+G++F      I ++     ++LW+ R G L+     H   V GV F 
Sbjct: 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR 271

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
                  S  DD  +K+WN +  + L TL GH   +  V F  +   I SASDD+T+++W
Sbjct: 272 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330

Query: 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180
           N ++   +  LTGH+  V   +F P    + SAS D+TV++W+      +T++     +R
Sbjct: 331 N-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 389

Query: 181 LSQMNTD----LFGGVDAVVK---------YVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227
               + D         D  VK           L GH   V   AF P    I S +DD+ 
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449

Query: 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG--VQT 285
           VKLW  N      + TL GH ++V  V F      I S S+DK++++W+   R G  +QT
Sbjct: 450 VKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQT 503

Query: 286 FRREHDRFWILASHPEMNLLAAGHD 310
                     +A  P+   +A+  D
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASD 528



 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 132/289 (45%), Gaps = 39/289 (13%)

Query: 45  DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE 104
           +R + H   VRGV F        S  DD  +K+WN +  + L TL GH   +  V F  +
Sbjct: 10  NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 68

Query: 105 YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD- 163
              I SASDD+T+++WN ++   +  LTGH+  V   +F P    + SAS D+TV++W+ 
Sbjct: 69  GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127

Query: 164 IGALRK------------------KTVSPADD--ILRLSQMNTDLFGGVDAVVKYVLEGH 203
            G L +                  +T++ A D   ++L   N  L           L GH
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--------QTLTGH 179

Query: 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDII 263
              V   AF P    I S +DD+ VKLW  N      + TL GH ++V  V F      I
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTI 236

Query: 264 VSNSEDKSIRVWDVTKRTG--VQTFRREHDRFWILASHPEMNLLAAGHD 310
            S S+DK++++W+   R G  +QT          +A  P+   +A+  D
Sbjct: 237 ASASDDKTVKLWN---RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASD 282



 Score = 35.0 bits (79), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG--VQTFRREHDRFWILA 297
           E + L  H ++V  V F      I S S+DK++++W+   R G  +QT        W +A
Sbjct: 8   ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVA 64

Query: 298 SHPEMNLLAAGHD 310
             P+   +A+  D
Sbjct: 65  FSPDGQTIASASD 77


>pdb|3MKQ|B Chain B, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
 pdb|3MKQ|D Chain D, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
 pdb|3MKQ|F Chain F, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
           Of The Copi Vesicular Coat
          Length = 177

 Score =  121 bits (303), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/175 (40%), Positives = 97/175 (55%), Gaps = 5/175 (2%)

Query: 629 ALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRT 688
           AL FV+D   RF+LALE GN+  A+  AK++++   W RL  EAL QGNA + E  YQ  
Sbjct: 1   ALQFVQDPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQ 60

Query: 689 KNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPL 748
            +F++LSFLYL+TG+++KLSKM  IA+ + D      N  Y    KER  I    G LPL
Sbjct: 61  HSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL 120

Query: 749 AYITASVHGLQDVAERL--AAELGDNVPSVPEGKAPSLLMPPSPVVCS--GDWPL 799
           AY  A  +G +  A      AE+ +   ++P+    S  +   PV+      WPL
Sbjct: 121 AYAVAKANGDEAAASAFLEQAEVDEQDVTLPDQMDASNFV-QRPVISKPLEKWPL 174


>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
          Length = 315

 Score =  119 bits (297), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 24/290 (8%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG---HDSGMIVFK 317
            + +W++  +  VQ  +   D     A HP  N++A+    +D  + +FK
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFK 312



 Score = 89.4 bits (220), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 251 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 283

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I+++
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLF 311



 Score = 87.0 bits (214), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 112

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 170

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 171 SYDGLCRIWDTASGQCLKTL 190



 Score = 79.3 bits (194), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 268

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KL++
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLFK 312



 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 75

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128


>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
          Length = 315

 Score =  118 bits (295), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG-ALR 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300



 Score = 89.7 bits (221), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K   CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD  +++WD    +  KT +   +       N  + 
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 251 GG----------------KW---------IVSGSEDNMVYIWNLQTKEI--VQKLQGHTD 283

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLW 311



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311



 Score = 85.1 bits (209), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 32/208 (15%)

Query: 79  NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV 138
           NY +   +FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +
Sbjct: 15  NYAL---MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71

Query: 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198
              ++    +L+VSAS D+T+++WD+ + +                              
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------------------------CLK 104

Query: 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258
            L+GH   V    F+P   LIVSG+ D  V++W +       + TL  H + VS V F+ 
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC--LKTLPAHSDPVSAVHFNR 162

Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
              +IVS+S D   R+WD      ++T 
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTL 190



 Score = 80.9 bits (198), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D  +++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN-------------- 268

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 312



 Score = 60.1 bits (144), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
           + L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V + 
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWS 77

Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128


>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
           Angstrom
 pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
          Length = 315

 Score =  118 bits (295), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG-ALR 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 263 MVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300



 Score = 92.0 bits (227), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K   CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 251 GG----------------KW---------IVSGSEDNMVYIWNLQTKEI--VQKLQGHTD 283

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLW 311



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311



 Score = 85.1 bits (209), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 32/208 (15%)

Query: 79  NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV 138
           NY +   +FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +
Sbjct: 15  NYAL---MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71

Query: 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198
              ++    +L+VSAS D+T+++WD+ + +                              
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------------------------CLK 104

Query: 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258
            L+GH   V    F+P   LIVSG+ D  V++W +       + TL  H + VS V F+ 
Sbjct: 105 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC--LKTLPAHSDPVSAVHFNR 162

Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
              +IVS+S D   R+WD      ++T 
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTL 190



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN-------------- 268

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 312



 Score = 60.1 bits (144), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
           + L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V + 
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWS 77

Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128


>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
          Length = 315

 Score =  118 bits (295), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300



 Score = 89.7 bits (221), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 68/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 251 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 283

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I+++
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLY 311



 Score = 87.0 bits (214), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 112

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 170

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 171 SYDGLCRIWDTASGQCLKTL 190



 Score = 82.4 bits (202), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T++++
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311



 Score = 79.7 bits (195), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 268

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KL++
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLYK 312



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 75

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128


>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
          Length = 311

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 21  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 81  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 140

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 259 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 296



 Score = 92.8 bits (229), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 67  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 127 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 187 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 246

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 247 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 279

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 280 VVISTACHPTENIIASAALENDKTIKLW 307



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 16  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 108

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 166

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 167 SYDGLCRIWDTASGQCLKTL 186



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 260

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 261 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 99  LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 264

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 265 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 308



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 14  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 71

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 72  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 124


>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
           Activity By A Histone H3 Based Peptide Mimetic
 pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
           Activity By A Histone H3 Based Peptide Mimetic
 pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll2
 pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll3
 pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll4
 pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1a
 pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1a
 pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1b
          Length = 318

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 88  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303



 Score = 92.8 bits (229), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 254 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 286

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLW 314



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 115

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 173

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 174 SYDGLCRIWDTASGQCLKTL 193



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 271

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 272 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 315



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 78

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 79  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131


>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
           Histone Mark That Supports Euchromatin Maintenance
          Length = 318

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 88  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 254 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 286

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLW 314



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 115

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 173

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 174 SYDGLCRIWDTASGQCLKTL 193



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314



 Score = 82.8 bits (203), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 271

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 272 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 315



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 78

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 79  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131


>pdb|2H9L|A Chain A, Wdr5delta23
 pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
          Length = 329

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 39  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 99  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 158

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 277 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 314



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 85  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 145 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 205 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 264

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 265 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 297

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 298 VVISTACHPTENIIASAALENDKTIKLW 325



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 126

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 184

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 185 SYDGLCRIWDTASGQCLKTL 204



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 279 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 282

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 283 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 326



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 32  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 89

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 90  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 142


>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
           With 2-
           Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
           5- Nitrophenyl]benzamide
          Length = 312

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 22  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 82  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 68  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 248 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 280

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 281 VVISTACHPTENIIASAALENDKTIKLW 308



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 109

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 167

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 168 SYDGLCRIWDTASGQCLKTL 187



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 265

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 266 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 309



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 72

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 73  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125


>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
          Length = 318

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 88  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 266 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 74  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 254 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 286

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 287 VVISTACHPTENIIASAALENDKTIKLW 314



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 115

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 173

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 174 SYDGLCRIWDTASGQCLKTL 193



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 271

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 272 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 315



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 78

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 79  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 131


>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
 pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
          Length = 308

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 18  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 78  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 137

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 256 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 293



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 64  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 124 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 184 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 243

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 244 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 276

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 277 VVISTACHPTENIIASAALENDKTIKLW 304



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 105

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 163

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 164 SYDGLCRIWDTASGQCLKTL 183



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 257

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 258 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 96  LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 261

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 262 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 305



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 11  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 68

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 69  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121


>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
 pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
 pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
           Assembly And Regulation
          Length = 317

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 27  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 87  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 146

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 265 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 302



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 73  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 133 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 193 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 252

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 253 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 285

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 286 VVISTACHPTENIIASAALENDKTIKLW 313



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 114

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 172

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 173 SYDGLCRIWDTASGQCLKTL 192



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 266

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 267 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 270

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 271 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 314



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 20  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 77

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 78  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 130


>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
 pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
 pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
 pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
 pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
 pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
          Length = 313

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 23  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 83  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 142

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 261 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 298



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 69  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 129 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 189 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 248

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 249 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 281

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 282 VVISTACHPTENIIASAALENDKTIKLW 309



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 110

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 168

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 169 SYDGLCRIWDTASGQCLKTL 188



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 262

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 263 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309



 Score = 82.8 bits (203), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 266

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 267 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 310



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 16  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 73

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 74  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 126


>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
 pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
           Complex
 pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
           Complex
 pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
           Complex
 pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
           Complex
          Length = 312

 Score =  117 bits (294), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 22  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 82  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 260 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 68  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 248 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 280

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 281 VVISTACHPTENIIASAALENDKTIKLW 308



 Score = 86.7 bits (213), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 109

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 167

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 168 SYDGLCRIWDTASGQCLKTL 187



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308



 Score = 82.8 bits (203), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 265

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 266 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 309



 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 72

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 73  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125


>pdb|2GNQ|A Chain A, Structure Of Wdr5
          Length = 336

 Score =  117 bits (293), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 46  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 106 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 165

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 284 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 321



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 92  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 152 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 212 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 271

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 272 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 304

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 305 VVISTACHPTENIIASAALENDKTIKLW 332



 Score = 86.7 bits (213), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 133

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 191

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 192 SYDGLCRIWDTASGQCLKTL 211



 Score = 85.5 bits (210), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 285

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 286 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332



 Score = 82.8 bits (203), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 289

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 290 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 333



 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 39  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 96

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 97  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 149


>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
           Site
 pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
           Site
 pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
           Peptide
 pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
           Peptide
          Length = 334

 Score =  117 bits (293), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     S   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 44  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 282 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 319



 Score = 92.4 bits (228), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 90  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 150 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 269

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 270 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 302

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 303 VVISTACHPTENIIASAALENDKTIKLW 330



 Score = 86.3 bits (212), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ S+S D+ I+IW          ++GH   +   ++   
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 131

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 189

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 190 SYDGLCRIWDTASGQCLKTL 209



 Score = 85.5 bits (210), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330



 Score = 82.4 bits (202), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 287

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 288 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 331



 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + S + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 37  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 94

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 95  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 147


>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
          Length = 315

 Score =  117 bits (292), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 21/278 (7%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   V  V F  +     +   D  IK+W     +   T+ GH   I  V +  +   +V
Sbjct: 25  HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168
           SASDD+T++IW+  S  C+  L GH++YV C +F+P+ +L+VS S D++VR+WD+   + 
Sbjct: 85  SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144

Query: 169 KKTVSPADDILRLSQMNTD----LFGGVDAV-----------VKYVLEGHDRGVNWAAFH 213
            KT+    D +     N D    +    D +           +K +++  +  V++  F 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204

Query: 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270
           P    I++   D  +KLW  ++ K   + T  GH N   C+  +        IVS SED 
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
            + +W++  +  VQ  +   D     A HP  N++A+ 
Sbjct: 263 LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300



 Score = 93.2 bits (230), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 118/268 (44%), Gaps = 31/268 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           +  +++ S    ++++     +++WD   G  +     H   V   +F+    L VSG  
Sbjct: 71  ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  +++W+ K  +CL TL  H D +  V F+ +   IVS+S D   RIW+  S  C+  L
Sbjct: 131 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190

Query: 132 T-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR-KKTVSPADDILRLSQMNTDLF 189
               N  V    F P    +++A+LD T+++WD    +  KT +   +       N  + 
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           GG                 W         IVSG++D  V +W +   +   V  L+GH +
Sbjct: 251 GG----------------KW---------IVSGSEDNLVYIWNLQTKEI--VQKLQGHTD 283

Query: 250 NVSCVMFHAKQDIIVSNS--EDKSIRVW 275
            V     H  ++II S +   DK+I++W
Sbjct: 284 VVISTACHPTENIIASAALENDKTIKLW 311



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFH 60
           L      S+ V  + F+     I++S + G+ ++WD   G  +    D+ + PV  V F 
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFH-HEYPWIVSASDDQTI 117
            +    ++   D  +K+W+Y   +CL T  GH +  Y     F      WIVS S+D  +
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264

Query: 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVW 162
            IWN Q++  +  L GH   V+  + HP E+++ SA+L  D+T+++W
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           FTL GH   + +V+F     W+ ++S D+ I+IW          ++GH   +   ++   
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
            +L+VSAS D+T+++WD+ + +                               L+GH   
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHSNY 112

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V    F+P   LIVSG+ D  V++W +   K   + TL  H + VS V F+    +IVS+
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSS 170

Query: 267 SEDKSIRVWDVTKRTGVQTF 286
           S D   R+WD      ++T 
Sbjct: 171 SYDGLCRIWDTASGQCLKTL 190



 Score = 83.2 bits (204), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 33/237 (13%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  SN V   +F+ +   I++      +++WD + G  +     H  PV  VHF++
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQTIRIW 120
              L VS   D   ++W+    +CL TL+   +  +  V+F     +I++A+ D T+++W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222

Query: 121 NWQSRTCISVLTGHNH--YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
           ++    C+   TGH +  Y + A+F       +VS S D  V +W+              
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN-------------- 268

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWR 232
            L+  ++   L G  D V+              A HPT  +I S A  +D+ +KLW+
Sbjct: 269 -LQTKEIVQKLQGHTDVVIS------------TACHPTENIIASAALENDKTIKLWK 312



 Score = 61.2 bits (147), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 63/113 (55%), Gaps = 2/113 (1%)

Query: 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
           +K+ L GH + V+   F P    + + + D+ +K+W   + K  +  T+ GH   +S V 
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK--TISGHKLGISDVA 75

Query: 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG 308
           + +  +++VS S+DK++++WDV+    ++T +   +  +    +P+ NL+ +G
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128


>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
 pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
          Length = 410

 Score =  116 bits (290), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 38/279 (13%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H  PV  V FH    + VS  +D  IKVW+Y+      TL GH D ++ + F H    + 
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI--GAL 167
           S S D TI++W++Q   CI  + GH+H V   S  P  D +VSAS D+T+++W++  G  
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226

Query: 168 RK---------KTVSPADDILRLSQMNTDLFGGVDAV----VKYVLEGHDRGVNWAAFHP 214
            K         + V P  D   ++  + D    V  V     K  L  H   V   ++ P
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286

Query: 215 TL--------------------PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
                                 P ++SG+ D+ +K+W ++      + TL GH N V  V
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGV 344

Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293
           +FH+    I+S ++DK++RVWD   +  ++T    H+ F
Sbjct: 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHF 382



 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 133/271 (49%), Gaps = 15/271 (5%)

Query: 9   SNRVKGLSF-HSKRPWILASLHSGV-IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF 66
           ++ V+ +SF HS +  +LAS  + + I+LWD++    I     HD  V  V    +    
Sbjct: 150 TDSVQDISFDHSGK--LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207

Query: 67  VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126
           VS   D  IK+W  +   C+ T  GH +++R V+ + +   I S S+DQT+R+W   ++ 
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267

Query: 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNT 186
           C + L  H H V C S+ P+      +S+ +       G+  KK+  P   +L  S+  T
Sbjct: 268 CKAELREHRHVVECISWAPESSY---SSISEAT-----GSETKKSGKPGPFLLSGSRDKT 319

Query: 187 -DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245
             ++     +    L GHD  V    FH     I+S ADD+ +++W     +   + TL 
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--MKTLN 377

Query: 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
            H + V+ + FH     +V+ S D++++VW+
Sbjct: 378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408



 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 35/261 (13%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           + L GH   +  V FH  +  +VSAS+D TI++W++++      L GH   V   SF   
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161

Query: 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206
             L+ S S D T+++WD                         F G + +    + GHD  
Sbjct: 162 GKLLASCSADMTIKLWD-------------------------FQGFECI--RTMHGHDHN 194

Query: 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266
           V+  +  P    IVS + D+ +K+W +     + V T  GH   V  V  +    +I S 
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQ--TGYCVKTFTGHREWVRMVRPNQDGTLIASC 252

Query: 267 SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFA 326
           S D+++RVW V  +      R        ++  PE +  +    +G    K  +  P F 
Sbjct: 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FL 311

Query: 327 VSGDSLFYAKDRFLRYYEFST 347
           +SG     ++D+ ++ ++ ST
Sbjct: 312 LSG-----SRDKTIKMWDVST 327



 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256
           KY L GH   V    FHP   ++VS ++D  +K+W   ET  +E  TL+GH ++V  + F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY-ETGDFE-RTLKGHTDSVQDISF 158

Query: 257 HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290
                ++ S S D +I++WD     G +  R  H
Sbjct: 159 DHSGKLLASCSADMTIKLWDF---QGFECIRTMH 189


>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
 pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
 pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
          Length = 445

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 115/257 (44%), Gaps = 44/257 (17%)

Query: 66  FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
            VSG DD  +KVW+    +CL TL+GH   + + Q       I+S S D+T+++WN ++ 
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNAETG 189

Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
            CI  L GH   V C   H K   VVS S D T+RVWDI                  Q  
Sbjct: 190 ECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI---------------ETGQCL 232

Query: 186 TDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245
             L G V AV     +G                +VSGA D  VK+W         + TL+
Sbjct: 233 HVLMGHVAAVRCVQYDGRR--------------VVSGAYDFMVKVWDPETETC--LHTLQ 276

Query: 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEM--N 303
           GH N V  + F      +VS S D SIRVWDV     + T          L S  E+  N
Sbjct: 277 GHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQS----LTSGMELKDN 330

Query: 304 LLAAGH-DSGMIVFKLE 319
           +L +G+ DS + ++ ++
Sbjct: 331 ILVSGNADSTVKIWDIK 347



 Score = 90.1 bits (222), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 41/273 (15%)

Query: 15  LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74
           L F   R  I++      +++W    G  +     H G V       +  + +SG  D  
Sbjct: 125 LQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT 180

Query: 75  IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH 134
           +KVWN +   C+ TL GH   +R +  H +   +VS S D T+R+W+ ++  C+ VL GH
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGH 238

Query: 135 NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194
              V C  +  +   VVS + D  V+VWD                   +  T L      
Sbjct: 239 VAAVRCVQYDGRR--VVSGAYDFMVKVWD------------------PETETCL------ 272

Query: 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254
              + L+GH   V    F      +VSG+ D  +++W +       + TL GH +  S +
Sbjct: 273 ---HTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGM 325

Query: 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287
               K +I+VS + D ++++WD+     +QT +
Sbjct: 326 EL--KDNILVSGNADSTVKIWDIKTGQCLQTLQ 356



 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 145/335 (43%), Gaps = 54/335 (16%)

Query: 89  LLGHLDYIRT-VQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
           L GH D++ T +QF      IVS SDD T+++W+  +  C+  L GH   V   S   ++
Sbjct: 114 LKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW--SSQMRD 169

Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
           ++++S S D+T++VW+            + I                   + L GH   V
Sbjct: 170 NIIISGSTDRTLKVWN--------AETGECI-------------------HTLYGHTSTV 202

Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
                H     +VSG+ D  +++W +   +   V  L GH+  V CV +  ++  +VS +
Sbjct: 203 RCMHLHE--KRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQYDGRR--VVSGA 256

Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327
            D  ++VWD    T + T +   +R + L     +++++   D+ + V+ +E       +
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSL-QFDGIHVVSGSLDTSIRVWDVETGNCIHTL 315

Query: 328 SG-----------DSLFYA--KDRFLRYYEFSTQKDTQVI--PIRRPGSTSLNQSPRTLS 372
           +G           D++  +   D  ++ ++  T +  Q +  P +   + +  Q  +   
Sbjct: 316 TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 375

Query: 373 YSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV 407
            + +++  +   D+  G +   ++  +S G G  V
Sbjct: 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 410



 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 11/156 (7%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           V+ + +  +R  +++  +  ++++WD    T +     H   V  + F       VSG  
Sbjct: 242 VRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH--VVSGSL 297

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
           D  I+VW+ +   C+ TL GH      ++       +VS + D T++IW+ ++  C+  L
Sbjct: 298 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTL 355

Query: 132 TG---HNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
            G   H   V C  F+  ++ V+++S D TV++WD+
Sbjct: 356 QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389



 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 9/123 (7%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK 61
           L   +  +NRV  L F      +  SL +  I++WD   G  I     H     G+    
Sbjct: 272 LHTLQGHTNRVYSLQFDGIHV-VSGSLDTS-IRVWDVETGNCIHTLTGHQSLTSGMELKD 329

Query: 62  SQPLFVSGGDDYKIKVWNYKMHRCLFTLLG---HLDYIRTVQFHHEYPWIVSASDDQTIR 118
           +  + VSG  D  +K+W+ K  +CL TL G   H   +  +QF+  +  ++++SDD T++
Sbjct: 330 N--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF--VITSSDDGTVK 385

Query: 119 IWN 121
           +W+
Sbjct: 386 LWD 388



 Score = 40.0 bits (92), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258
           VL+GHD  V           IVSG+DD  +K+W     K   + TL GH   V       
Sbjct: 113 VLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKC--LRTLVGHTGGVWSSQM-- 167

Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318
           + +II+S S D++++VW+      + T          +  H E  +++   D+ + V+ +
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDI 226

Query: 319 E 319
           E
Sbjct: 227 E 227


>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
           Murine Apaf-1
          Length = 1256

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 24/283 (8%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHF-H 60
           L   +   + V   +F S   +I        +++WD   G L+  +DEH   V   HF +
Sbjct: 657 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 716

Query: 61  KSQPLFV-SGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119
           KS  L + +G +D+ +K+W+     C  T+ GH + +   +F  +   + S S D T+R+
Sbjct: 717 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776

Query: 120 WNWQS---RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
           W+ +S   R  I+V          +S  P ED+ V       V+     A   K +  A 
Sbjct: 777 WDVRSANERKSINV-----KRFFLSSEDPPEDVEV------IVKCCSWSADGDKIIVAAK 825

Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236
           + + L  ++T        ++  +  GH   + +  F P   L V       V+LW ++  
Sbjct: 826 NKVLLFDIHT------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 879

Query: 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279
              +V   RGH++ V  VMF       ++ S+D++IRVW+  K
Sbjct: 880 --LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920



 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 33/211 (15%)

Query: 92  HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151
           H D +    F  +   I S   D+T++++  ++   +  +  H   V+C +F   +  + 
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680

Query: 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211
           + S D+ V++WD  +   K V   D+                         H   VN   
Sbjct: 681 TCSADKKVKIWD--SATGKLVHTYDE-------------------------HSEQVNCCH 713

Query: 212 F--HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269
           F       L+ +G++D  +KLW +N+ +    +T+ GH N+V+   F    +++ S S D
Sbjct: 714 FTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSPDDELLASCSAD 771

Query: 270 KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
            ++R+WDV  R+  +       RF++ +  P
Sbjct: 772 GTLRLWDV--RSANERKSINVKRFFLSSEDP 800



 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 19/183 (10%)

Query: 69   GGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128
            G +D  IK+     +R   + +GH   +R +QF  +   ++S+S+D  I++WNWQ+   +
Sbjct: 986  GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045

Query: 129  SVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDI--GALRKK---------TVSPAD 176
              L  H   V    F   +D  ++S S D TV+VW++  G + +          + + + 
Sbjct: 1046 -FLQAHQETV--KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1102

Query: 177  DILRLSQMNTDLFGGV---DAVVK-YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232
            D  + S  + D    +   D +   + L+GH+  V  +AF     L+ +G D+ ++++W 
Sbjct: 1103 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162

Query: 233  MNE 235
            +++
Sbjct: 1163 VSD 1165



 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 36/279 (12%)

Query: 12   VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
            VK  S+ +    I+ +  + V+    +  G L +    H   ++   F     L V    
Sbjct: 808  VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867

Query: 72   DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
             Y +++WN      +    GHL ++  V F  +    ++ASDDQTIR+W    + C    
Sbjct: 868  QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVC---- 922

Query: 132  TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGG 191
                          K   +V   L Q +   D+     +T+  A D +R  Q    L  G
Sbjct: 923  --------------KNSAIV---LKQEI---DVVFQENETMVLAVDNIRGLQ----LIAG 958

Query: 192  VDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV 251
                + Y+ E     V+     P L  +  G +D  +K+  +   + +      GH   V
Sbjct: 959  KTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAV 1013

Query: 252  SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290
              + F A    ++S+SED  I+VW+   +TG   F + H
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNW--QTGDYVFLQAH 1050



 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 2/153 (1%)

Query: 12   VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
            V+ + F +    +++S    VIQ+W+++ G  +     H   V+     +   L +S   
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRL-LSWSF 1070

Query: 72   DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
            D  +KVWN    R       H   + +     +     S S D+T +IW++   + +  L
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1130

Query: 132  TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
             GHN  V C++F     L+ +   +  +R+W++
Sbjct: 1131 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163



 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 31   GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90
            G +++W+   G +   F  H G V           F S   D   K+W++ +   L  L 
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1131

Query: 91   GHLDYIRTVQFHHEYPWIVSASDDQTIRIWN------WQSRTCISVLTG---HNHYVMCA 141
            GH   +R   F  +   + +  D+  IRIWN        S   ISV  G   H  +V   
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1191

Query: 142  SFHPKEDLVVSA 153
             F P    +VSA
Sbjct: 1192 CFSPDSKTLVSA 1203



 Score = 34.7 bits (78), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256
           + V+  H   V  A F      I S   D+ +++++  ET    +D ++ H + V C  F
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA-ETGEKLLD-IKAHEDEVLCCAF 672

Query: 257 HAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
            +    I + S DK +++WD      V T+
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTY 702


>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
           Destruction Motif Binding And Lysine Specificity On The
           Scfbeta-Trcp1 Ubiquitin Ligase
          Length = 435

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 24/186 (12%)

Query: 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI--G 165
           IVS   D TI+IW+  +  C  +LTGH   V+C  +   E ++++ S D TVRVWD+  G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203

Query: 166 ALRKKTVSPADDILRLSQMNT--------------DLFGGVDAVVKYVLEGHDRGVNWAA 211
            +    +   + +L L   N               D+    D  ++ VL GH   VN   
Sbjct: 204 EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263

Query: 212 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS 271
           F      IVS + DR +K+W  N +    V TL GH   ++C+ +  +  ++VS S D +
Sbjct: 264 FDD--KYIVSASGDRTIKVW--NTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNT 317

Query: 272 IRVWDV 277
           IR+WD+
Sbjct: 318 IRLWDI 323



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 141/327 (43%), Gaps = 64/327 (19%)

Query: 2   LTKFETKSNRVKG---LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVH 58
           L +   +S   KG   L +  ++  I++ L    I++WD            H G V  + 
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 180

Query: 59  FHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIR 118
           +   + + ++G  D  ++VW+      L TL+ H + +  ++F++    +V+ S D++I 
Sbjct: 181 Y--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIA 236

Query: 119 IWNWQSRTCIS---VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPA 175
           +W+  S T I+   VL GH   V    F  K   +VSAS D+T++VW+            
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTC-------- 286

Query: 176 DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235
            + +R                   L GH RG+  A       L+VSG+ D  ++LW +  
Sbjct: 287 -EFVR------------------TLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIEC 325

Query: 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-------------RTG 282
                V  L GH   V C+ F  K+  IVS + D  I+VWD+               RT 
Sbjct: 326 GACLRV--LEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381

Query: 283 VQ----TFRREHDRFWILASHPEMNLL 305
           V+     FR + D F I++S  +  +L
Sbjct: 382 VEHSGRVFRLQFDEFQIVSSSHDDTIL 408



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 23  WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82
           +I+++     I++W+      +   + H   +  + +     L VSG  D  I++W+ + 
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIEC 325

Query: 83  HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW---------QSRTCISVLTG 133
             CL  L GH + +R ++F ++   IVS + D  I++W+              C+  L  
Sbjct: 326 GACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 383

Query: 134 HNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
           H+  V    F   E  +VS+S D T+ +WD
Sbjct: 384 HSGRVFRLQF--DEFQIVSSSHDDTILIWD 411


>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
          Length = 1249

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 24/283 (8%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHF-H 60
           L   +   + V   +F S   +I        +++WD   G L+  +DEH   V   HF +
Sbjct: 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 709

Query: 61  KSQPLFV-SGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119
           KS  L + +G +D+ +K+W+     C  T+ GH + +   +F  +   + S S D T+R+
Sbjct: 710 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769

Query: 120 WNWQS---RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176
           W+ +S   R  I+V          +S  P ED+ V       V+     A   K +  A 
Sbjct: 770 WDVRSANERKSINV-----KRFFLSSEDPPEDVEV------IVKCCSWSADGDKIIVAAK 818

Query: 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236
           + + L  ++T        ++  +  GH   + +  F P   L V       V+LW ++  
Sbjct: 819 NKVLLFDIHT------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 872

Query: 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279
              +V   RGH++ V  VMF       ++ S+D++IRVW+  K
Sbjct: 873 --LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913



 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 33/211 (15%)

Query: 92  HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151
           H D +    F  +   I S   D+T++++  ++   +  +  H   V+C +F   +  + 
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673

Query: 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211
           + S D+ V++WD  +   K V   D+                         H   VN   
Sbjct: 674 TCSADKKVKIWD--SATGKLVHTYDE-------------------------HSEQVNCCH 706

Query: 212 F--HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269
           F       L+ +G++D  +KLW +N+ +    +T+ GH N+V+   F    +++ S S D
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSPDDELLASCSAD 764

Query: 270 KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
            ++R+WDV  R+  +       RF++ +  P
Sbjct: 765 GTLRLWDV--RSANERKSINVKRFFLSSEDP 793



 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 19/183 (10%)

Query: 69   GGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128
            G +D  IK+     +R   + +GH   +R +QF  +   ++S+S+D  I++WNWQ+   +
Sbjct: 979  GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038

Query: 129  SVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDI--GALRKK---------TVSPAD 176
              L  H   V    F   +D  ++S S D TV+VW++  G + +          + + + 
Sbjct: 1039 -FLQAHQETV--KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095

Query: 177  DILRLSQMNTDLFGGV---DAVVK-YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232
            D  + S  + D    +   D +   + L+GH+  V  +AF     L+ +G D+ ++++W 
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155

Query: 233  MNE 235
            +++
Sbjct: 1156 VSD 1158



 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 36/279 (12%)

Query: 12   VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
            VK  S+ +    I+ +  + V+    +  G L +    H   ++   F     L V    
Sbjct: 801  VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860

Query: 72   DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
             Y +++WN      +    GHL ++  V F  +    ++ASDDQTIR+W    + C    
Sbjct: 861  QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE-TKKVC---- 915

Query: 132  TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGG 191
                          K   +V   L Q +   D+     +T+  A D +R  Q    L  G
Sbjct: 916  --------------KNSAIV---LKQEI---DVVFQENETMVLAVDNIRGLQ----LIAG 951

Query: 192  VDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV 251
                + Y+ E     V+     P L  +  G +D  +K+  +   + +      GH   V
Sbjct: 952  KTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAV 1006

Query: 252  SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290
              + F A    ++S+SED  I+VW+   +TG   F + H
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNW--QTGDYVFLQAH 1043



 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 2/153 (1%)

Query: 12   VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
            V+ + F +    +++S    VIQ+W+++ G  +     H   V+     +   L +S   
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRL-LSWSF 1063

Query: 72   DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131
            D  +KVWN    R       H   + +     +     S S D+T +IW++   + +  L
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123

Query: 132  TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
             GHN  V C++F     L+ +   +  +R+W++
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156



 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 31   GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90
            G +++W+   G +   F  H G V           F S   D   K+W++ +   L  L 
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124

Query: 91   GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS----RTC--ISVLTG---HNHYVMCA 141
            GH   +R   F  +   + +  D+  IRIWN        +C  ISV  G   H  +V   
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184

Query: 142  SFHPKEDLVVSA 153
             F P    +VSA
Sbjct: 1185 CFSPDSKTLVSA 1196



 Score = 34.7 bits (78), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256
           + V+  H   V  A F      I S   D+ +++++  ET    +D ++ H + V C  F
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA-ETGEKLLD-IKAHEDEVLCCAF 665

Query: 257 HAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286
            +    I + S DK +++WD      V T+
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTY 695


>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
           A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
           Translating 80s Ribosome
 pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
           Of The First 80s In The Asymmetric Unit.
 pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
           Of The Second 80s In The Asymmetric Unit.
 pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome A
 pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome B
          Length = 319

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F+  S+ V+  +  +   + L++     ++LWD   G    RF  H   V  V   K   
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
           + +SG  D  IKVW  K  +CL TLLGH D++  V+         +   I+SA +D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179

Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
            WN       +   GHN  +   +  P   L+ SA  D  + +W++ A +   T+S  D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239

Query: 178 ILRLS 182
           +  L+
Sbjct: 240 VFSLA 244



 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)

Query: 47  FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
            + H+G V  +     QP L +S   D  +  W     + K    + +  GH   ++   
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72

Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
              +  + +SAS D+T+R+W+  +        GH   VM      K  +++S S D+T++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132

Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
           VW I      T+   +D +   ++  +     D+V                       I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170

Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
           S  +D+ VK W +N+ +  E D + GH +N++ +       +I S  +D  I +W++  +
Sbjct: 171 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228

Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
             + T   + + F  LA  P    LAA   +G+ VF L+ +      RP FA
Sbjct: 229 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279



 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)

Query: 37  DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
           D + G  +  F  H   V+           +S   D  +++W+          +GH   +
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110

Query: 97  RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
            +V    +   I+S S D+TI++W  + + C++ L GHN +V      P E        +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169

Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
           +SA  D+ V+ W++                  Q+  D              GH+  +N  
Sbjct: 170 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202

Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
              P   LI S   D ++ LW +   KA
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKA 230


>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P63
 pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P63
          Length = 319

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F+  S+ V+  +  +   + L++     ++LWD   G    RF  H   V  V   K   
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
           + +SG  D  IKVW  K  +CL TLLGH D++  V+         +   I+SA +D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179

Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
            WN       +   GHN  +   +  P   L+ SA  D  + +W++ A +   T+S  D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239

Query: 178 ILRLS 182
           +  L+
Sbjct: 240 VFSLA 244



 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)

Query: 47  FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
            + H+G V  +     QP L +S   D  +  W     + K    + +  GH   ++   
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72

Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
              +  + +SAS D+T+R+W+  +        GH   VM      K  +++S S D+T++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132

Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
           VW I      T+   +D +   ++  +     D+V                       I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170

Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
           S  +D+ VK W +N+ +  E D + GH +N++ +       +I S  +D  I +W++  +
Sbjct: 171 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228

Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
             + T   + + F  LA  P    LAA   +G+ VF L+ +      RP FA
Sbjct: 229 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279



 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)

Query: 37  DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
           D + G  +  F  H   V+           +S   D  +++W+          +GH   +
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110

Query: 97  RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
            +V    +   I+S S D+TI++W  + + C++ L GHN +V      P E        +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169

Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
           +SA  D+ V+ W++                  Q+  D              GH+  +N  
Sbjct: 170 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202

Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
              P   LI S   D ++ LW +   KA
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKA 230


>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
 pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
 pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
 pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
           P21
          Length = 319

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F+  S+ V+  +  +   + L++     ++LWD   G    RF  H   V  V   K   
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
           + +SG  D  IKVW  K  +CL TLLGH D++  V+         +   I+SA +D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179

Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
            WN       +   GHN  +   +  P   L+ SA  D  + +W++ A +   T+S  D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239

Query: 178 ILRLS 182
           +  L+
Sbjct: 240 VFSLA 244



 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)

Query: 47  FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
            + H+G V  +     QP L +S   D  +  W     + K    + +  GH   ++   
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72

Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
              +  + +SAS D+T+R+W+  +        GH   VM      K  +++S S D+T++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132

Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
           VW I      T+   +D +   ++  +     D+V                       I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170

Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
           S  +D+ VK W +N+ +  E D + GH +N++ +       +I S  +D  I +W++  +
Sbjct: 171 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228

Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
             + T   + + F  LA  P    LAA   +G+ VF L+ +      RP FA
Sbjct: 229 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279



 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)

Query: 37  DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
           D + G  +  F  H   V+           +S   D  +++W+          +GH   +
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110

Query: 97  RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
            +V    +   I+S S D+TI++W  + + C++ L GHN +V      P E        +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169

Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
           +SA  D+ V+ W++                  Q+  D              GH+  +N  
Sbjct: 170 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202

Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
              P   LI S   D ++ LW +   KA
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKA 230


>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
           Cryo-em Map Of Yeast 80s Ribosome
          Length = 314

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F+  S+ V+  +  +   + L++     ++LWD   G    RF  H   V  V   K   
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
           + +SG  D  IKVW  K  +CL TLLGH D++  V+         +   I+SA +D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179

Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
            WN       +   GHN  +   +  P   L+ SA  D  + +W++ A +   T+S  D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 239

Query: 178 ILRLS 182
           +  L+
Sbjct: 240 VFSLA 244



 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)

Query: 47  FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
            + H+G V  +     QP L +S   D  +  W     + K    + +  GH   ++   
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72

Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
              +  + +SAS D+T+R+W+  +        GH   VM      K  +++S S D+T++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132

Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
           VW I      T+   +D +   ++  +     D+V                       I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170

Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
           S  +D+ VK W +N+ +  E D + GH +N++ +       +I S  +D  I +W++  +
Sbjct: 171 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228

Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
             + T   + + F  LA  P    LAA   +G+ VF L+ +      RP FA
Sbjct: 229 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279



 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)

Query: 37  DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
           D + G  +  F  H   V+           +S   D  +++W+          +GH   +
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110

Query: 97  RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
            +V    +   I+S S D+TI++W  + + C++ L GHN +V      P E        +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169

Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
           +SA  D+ V+ W++                  Q+  D              GH+  +N  
Sbjct: 170 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202

Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
              P   LI S   D ++ LW +   KA
Sbjct: 203 TASPDGTLIASAGKDGEIMLWNLAAKKA 230


>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
           EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
           Lanuginosus Ribosome At 8.9a Resolution
          Length = 313

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F+  S+ V+  +  +   + L++     ++LWD   G    RF  H   V  V   K   
Sbjct: 55  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
           + +SG  D  IKVW  K  +CL TLLGH D++  V+         +   I+SA +D+ ++
Sbjct: 115 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 173

Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
            WN       +   GHN  +   +  P   L+ SA  D  + +W++ A +   T+S  D+
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 233

Query: 178 ILRLS 182
           +  L+
Sbjct: 234 VFSLA 238



 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 37/292 (12%)

Query: 47  FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
            + H+G V  +     QP L +S   D  +  W     + K    + +  GH   ++   
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66

Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
              +  + +SAS D+T+R+W+  +        GH   VM      K  +++S S D+T++
Sbjct: 67  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126

Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
           VW I      T+   +D +   ++  +     D+V                       I+
Sbjct: 127 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 164

Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
           S  +D+ VK W +N+ +  E D + GH +N++ +       +I S  +D  I +W++  +
Sbjct: 165 SAGNDKMVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222

Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
             + T   + + F  LA  P    LAA   +G+ VF L+ +      RP FA
Sbjct: 223 KAMYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 273



 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)

Query: 37  DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
           D + G  +  F  H   V+           +S   D  +++W+          +GH   +
Sbjct: 45  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 104

Query: 97  RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
            +V    +   I+S S D+TI++W  + + C++ L GHN +V      P E        +
Sbjct: 105 MSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 163

Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
           +SA  D+ V+ W++                  Q+  D              GH+  +N  
Sbjct: 164 ISAGNDKMVKAWNLNQF---------------QIEADFI------------GHNSNINTL 196

Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
              P   LI S   D ++ LW +   KA
Sbjct: 197 TASPDGTLIASAGKDGEIMLWNLAAKKA 224


>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
          Length = 694

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 9   SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS 68
           S+ V+ +   S   + L+    G ++LWD   G    RF  H   V  V F       VS
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS 489

Query: 69  GGDDYKIKVWNYKMHRCLFTLL----GHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNW 122
              D  IK+WN  +  C +T+     GH D++  V+F      P IVSAS D+T+++WN 
Sbjct: 490 ASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548

Query: 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
            +    S L GH  YV   +  P   L  S   D  V +WD+   +K
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595



 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 111/274 (40%), Gaps = 41/274 (14%)

Query: 24  ILASLHSGVIQLW-----DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78
           I+++     I LW     D   G    R   H   V  V         +SG  D ++++W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457

Query: 79  NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TGHN 135
           +          +GH   + +V F  +   IVSAS D+TI++WN       ++     GH 
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517

Query: 136 HYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVD 193
            +V C  F P   +  +VSAS D+TV+VW++   +                         
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK------------------------- 552

Query: 194 AVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSC 253
             ++  L GH   V+  A  P   L  SG  D  V LW + E K  ++ +L    N+V  
Sbjct: 553 --LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEA--NSVIH 606

Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287
            +  +     +  + +  I++WD+  ++ V+  +
Sbjct: 607 ALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640



 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 36/265 (13%)

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFT-----LLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119
           + VS   D  I +W        +      L GH  ++  V    +  + +S S D  +R+
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456

Query: 120 WNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179
           W+  +        GH   V+  +F      +VSAS D+T+++W+     K T+S      
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE----- 511

Query: 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETK 237
                     GG         EGH   V+   F P    P IVS + D+ VK+W ++  K
Sbjct: 512 ----------GG---------EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552

Query: 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR-FWIL 296
                TL GH   VS V       +  S  +D  + +WD+ +  G + +  E +     L
Sbjct: 553 L--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE--GKKLYSLEANSVIHAL 608

Query: 297 ASHPEMNLLAAGHDSGMIVFKLERE 321
              P    L A  + G+ ++ LE +
Sbjct: 609 CFSPNRYWLCAATEHGIKIWDLESK 633



 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 24/212 (11%)

Query: 148 DLVVSASLDQTVRVWDI-------GALRKKTVSPA---DDILRLSQMNTDLFGGVDAVVK 197
           D++VSAS D+++ +W +       G  +++    +   +D++  S     L G  D  ++
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455

Query: 198 YV----------LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR-MNETKAWEVDTLRG 246
                         GH + V   AF      IVS + DR +KLW  + E K    +   G
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG 515

Query: 247 HMNNVSCVMFHAK--QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNL 304
           H + VSCV F     Q  IVS S DK+++VW+++      T          +A  P+ +L
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575

Query: 305 LAAGHDSGMI-VFKLERERPAFAVSGDSLFYA 335
            A+G   G++ ++ L   +  +++  +S+ +A
Sbjct: 576 CASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607



 Score = 31.6 bits (70), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 243 TLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTK 279
           T+R H + V+ +       DIIVS S DKSI +W +TK
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTK 414


>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
 pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
 pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
 pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
          Length = 319

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 8/185 (4%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
           F+  S+ V+  +  +   + L++     ++LWD   G    RF  H   V  V   K   
Sbjct: 61  FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIR 118
             +SG  D  IKVW  K  +CL TLLGH D++  V+         +   I+SA +D+ ++
Sbjct: 121 XIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVK 179

Query: 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK-TVSPADD 177
            WN       +   GHN  +   +  P   L+ SA  D  + +W++ A +   T+S  D+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE 239

Query: 178 ILRLS 182
           +  L+
Sbjct: 240 VFSLA 244



 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 37/292 (12%)

Query: 47  FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVW-----NYKMHRCLFTLLGHLDYIRTVQ 100
            + H+G V  +     QP L +S   D  +  W     + K    + +  GH   ++   
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72

Query: 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160
              +  + +SAS D+T+R+W+  +        GH   V       K   ++S S D+T++
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132

Query: 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220
           VW I      T+   +D +   ++  +     D+V                       I+
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT----------------------II 170

Query: 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280
           S  +D+ VK W +N+ +  E D + GH +N++ +       +I S  +D  I +W++  +
Sbjct: 171 SAGNDKXVKAWNLNQFQI-EADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228

Query: 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE------RPAFA 326
               T   + + F  LA  P    LAA   +G+ VF L+ +      RP FA
Sbjct: 229 KAXYTLSAQDEVF-SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFA 279



 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 78/208 (37%), Gaps = 34/208 (16%)

Query: 37  DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI 96
           D + G  +  F  H   V+           +S   D  +++W+          +GH   +
Sbjct: 51  DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110

Query: 97  RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED------LV 150
            +V    +   I+S S D+TI++W  + + C++ L GHN +V      P E        +
Sbjct: 111 XSVDIDKKASXIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTI 169

Query: 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210
           +SA  D+ V+ W++                  Q+  D              GH+  +N  
Sbjct: 170 ISAGNDKXVKAWNLNQF---------------QIEADFI------------GHNSNINTL 202

Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKA 238
              P   LI S   D ++ LW +   KA
Sbjct: 203 TASPDGTLIASAGKDGEIXLWNLAAKKA 230


>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
 pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
 pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
          Length = 393

 Score = 76.3 bits (186), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 120/271 (44%), Gaps = 45/271 (16%)

Query: 95  YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154
           YIR+V F  +  ++ + ++D+ IRIW+ ++R  + +L GH   +    + P  D +VS S
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184

Query: 155 LDQTVRVWDIGALR-KKTVSPADDILRLSQMNTD----LFGGVDAVVK-------YVLE- 201
            D+TVR+WD+   +   T+S  D +  ++    D      G +D  V+       +++E 
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244

Query: 202 ---------GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-----------ETKAWEV 241
                    GH   V    F      +VSG+ DR VKLW +             +   EV
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304

Query: 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASH-- 299
            T  GH + V  V      + I+S S+D+ +  WD  K++G      +  R  +++    
Sbjct: 305 -TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD--KKSGNPLLMLQGHRNSVISVAVA 361

Query: 300 ------PEMNLLAAGH-DSGMIVFKLERERP 323
                 PE N+ A G  D    ++K ++  P
Sbjct: 362 NGSSLGPEYNVFATGSGDCKARIWKYKKIAP 392



 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 32/282 (11%)

Query: 12  VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD 71
           ++ + F     ++       +I++WD     ++     H+  +  + +  S    VSG  
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185

Query: 72  DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFH-HEYPWIVSASDDQTIRIWNWQSRTCISV 130
           D  +++W+ +  +C  TL    D + TV     +  +I + S D+ +R+W+ ++   +  
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244

Query: 131 L-------TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183
           L       TGH   V    F      VVS SLD++V++W++     K           S 
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK-----------SD 293

Query: 184 MNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243
             T   G  +  V Y+  GH   V   A       I+SG+ DR V  W  ++     +  
Sbjct: 294 SKTPNSGTCE--VTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFW--DKKSGNPLLM 347

Query: 244 LRGHMNNVSCVM------FHAKQDIIVSNSEDKSIRVWDVTK 279
           L+GH N+V  V          + ++  + S D   R+W   K
Sbjct: 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389



 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 12/133 (9%)

Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK 270
            F P    + +GA+DR +++W +   K   V  L+GH  ++  + +    D +VS S D+
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187

Query: 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG----------HDSGMIVFKLER 320
           ++R+WD+       T   E     +  S  +   +AAG           ++G +V +L+ 
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247

Query: 321 ERPAFAVSGDSLF 333
           E  +     DS++
Sbjct: 248 ENESGTGHKDSVY 260


>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
 pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
          Length = 464

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%)

Query: 67  VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126
           ++G DD  I+V++    + L  L GH   +  +++ H    +VS S D+T+R+W+ +   
Sbjct: 136 ITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC 194

Query: 127 CISVLTGHNHYVMCASFHPKEDL--VVSASLDQTVRVWDIGALRKKTVSPADD------- 177
           C  V  GHN  V C      +++  +V+ S D T+ VW    L K++  P          
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW---KLPKESSVPDHGEEHDYPL 251

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237
           +    + N    G        VL GH   V   + H    ++VSG+ D  + +W + + K
Sbjct: 252 VFHTPEENPYFVG--------VLRGHXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXK 301

Query: 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277
              +  L GH + +   ++  ++   +S S D +IR+WD+
Sbjct: 302 CLYI--LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339



 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   VR V  H +  + VSG  D  + VW+    +CL+ L GH D I +  + HE    +
Sbjct: 269 HXASVRTVSGHGN--IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI 326

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
           SAS D TIRIW+ ++      L GH   V       K   +VSA+ D ++R WD     +
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSR 384

Query: 170 K 170
           K
Sbjct: 385 K 385



 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 118/320 (36%), Gaps = 62/320 (19%)

Query: 33  IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH 92
           I+++D      + +   HDG V  + +     + VSG  D  ++VW+ K   C     GH
Sbjct: 144 IRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGH 202

Query: 93  LDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTC----------------------- 127
              +R +    +    +IV+ S D T+ +W     +                        
Sbjct: 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262

Query: 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187
           + VL GH   V   S H   ++VVS S D T+ VWD+   +                   
Sbjct: 263 VGVLRGHXASVRTVSGHG--NIVVSGSYDNTLIVWDVAQXK------------------- 301

Query: 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247
                     Y+L GH   +    +       +S + D  +++W +   +     TL+GH
Sbjct: 302 --------CLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL--XYTLQGH 351

Query: 248 MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS-HPEMNLLA 306
              V  +    K   +VS + D SIR WD    +  + F   H     + + +   N+L 
Sbjct: 352 TALVGLLRLSDK--FLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILV 407

Query: 307 AGHDSGMIVFKLERERPAFA 326
           +G ++   ++ L   +   A
Sbjct: 408 SGSENQFNIYNLRSGKLVHA 427



 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 36/183 (19%)

Query: 129 SVLTGHNHYVM-CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187
           + L GH   V+ C  F  +++ V++ + D+ +RV+D  ++ KK       +L+LS     
Sbjct: 115 TTLRGHXTSVITCLQF--EDNYVITGADDKXIRVYD--SINKKF------LLQLS----- 159

Query: 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247
                         GHD GV WA  +    ++VSG+ DR V++W +   K        GH
Sbjct: 160 --------------GHDGGV-WALKYAHGGILVSGSTDRTVRVWDIK--KGCCTHVFEGH 202

Query: 248 MNNVSCVMFHAKQDI--IVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLL 305
            + V C+     ++I  IV+ S D ++ VW + K + V     EHD + ++   PE N  
Sbjct: 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPY 261

Query: 306 AAG 308
             G
Sbjct: 262 FVG 264



 Score = 39.3 bits (90), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 219 IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278
           +++GADD+ ++++     K   +  L GH   V  + + A   I+VS S D+++RVWD+ 
Sbjct: 135 VITGADDKXIRVYDSINKKF--LLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191

Query: 279 KRTGVQTFRREHD--RFWILASHPEMNLLAAG-HDSGMIVFKLERE 321
           K      F   +   R   +  +  +  +  G  D+ + V+KL +E
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237


>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 127/312 (40%), Gaps = 41/312 (13%)

Query: 32  VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91
            +Q++    G  +     H+  V    F        +   D K+K+WN      + T   
Sbjct: 644 TLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDE 703

Query: 92  HLDYIRTVQF----HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
           H + +    F    HH    + + S D  +++W+   + C + + GH + V    F P +
Sbjct: 704 HSEQVNCCHFTNSSHHLL--LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 761

Query: 148 DLVVSASLDQTVRVWD-IGALRKKTVS----------PADD---ILRLSQMNTD------ 187
            L+ S S D T+++WD   A  +K+++          P +D   I++    + D      
Sbjct: 762 KLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMV 821

Query: 188 -------LFG-GVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239
                  LF      ++  +  GH   + +  F P   L V       V+LW  +     
Sbjct: 822 AAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRS-- 879

Query: 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK--RTGVQTFRREHDRFWILA 297
           +V   RGH++ V  VMF       +++S+D++IR+W+  K  +      ++E D   ++ 
Sbjct: 880 KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVD---VVF 936

Query: 298 SHPEMNLLAAGH 309
              E+ +LA  H
Sbjct: 937 QENEVMVLAVDH 948



 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 22/234 (9%)

Query: 17   FHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76
            F      +LA  H   +QL + R G  ID   E       +  H     F  G ++  I+
Sbjct: 936  FQENEVMVLAVDHIRRLQLINGRTGQ-IDYLTEAQVSCCCLSPHLQYIAF--GDENGAIE 992

Query: 77   VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH 136
            +     +R   +   H   +  +QF  +   ++S+SDD  I++WNWQ   CI  L GH  
Sbjct: 993  ILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQE 1051

Query: 137  YVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKK--------TVSPAD---DILRLSQM 184
             V    F   K   ++S S D TV+VW+I    K+        TV   D   D  + S  
Sbjct: 1052 TV--KDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSST 1109

Query: 185  NTDLFGGV---DAVVK-YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234
            + D    +   D ++  + L GH+  V  +AF     L+ +G D+ ++++W ++
Sbjct: 1110 SADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163



 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 31/189 (16%)

Query: 92  HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151
           H D +    F  +   I S   D+T++++  ++   +  +  H   V+C +F   +  + 
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679

Query: 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211
           + S+D+ V++W+                    M  +L    D         H   VN   
Sbjct: 680 TCSVDKKVKIWN-------------------SMTGELVHTYDE--------HSEQVNCCH 712

Query: 212 FHPTLP--LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269
           F  +    L+ +G+ D  +KLW +N+ +    +T+ GH N+V+   F     ++ S S D
Sbjct: 713 FTNSSHHLLLATGSSDCFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSPDDKLLASCSAD 770

Query: 270 KSIRVWDVT 278
            ++++WD T
Sbjct: 771 GTLKLWDAT 779



 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 34/227 (14%)

Query: 50   HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
            H   ++   F     L V     Y +++WN      +    GHL ++  V F  +    +
Sbjct: 845  HHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFL 904

Query: 110  SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
            ++SDDQTIR+W    + C       N  VM               L Q V V  +    +
Sbjct: 905  TSSDDQTIRLWE-TKKVC------KNSAVM---------------LKQEVDV--VFQENE 940

Query: 170  KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
              V   D I RL  +N     G    + Y+ E     V+     P L  I  G ++  ++
Sbjct: 941  VMVLAVDHIRRLQLIN-----GRTGQIDYLTEAQ---VSCCCLSPHLQYIAFGDENGAIE 992

Query: 230  LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
            +  +   + ++  +   H   V  + F A +  ++S+S+D  I+VW+
Sbjct: 993  ILELVNNRIFQ--SRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037


>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
           ALLOSTERIC Inhibitor Scf-I2
 pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
           ALLOSTERIC Inhibitor Scf-I2
 pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
 pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
          Length = 464

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%)

Query: 67  VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126
           ++G DD  I+V++    + L  L GH   +  +++ H    +VS S D+T+R+W+ +   
Sbjct: 136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC 194

Query: 127 CISVLTGHNHYVMCASFHPKEDL--VVSASLDQTVRVWDIGALRKKTVSPADD------- 177
           C  V  GHN  V C      +++  +V+ S D T+ VW    L K++  P          
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW---KLPKESSVPDHGEEHDYPL 251

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237
           +    + N    G        VL GH   V   + H    ++VSG+ D  + +W + + K
Sbjct: 252 VFHTPEENPYFVG--------VLRGHMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMK 301

Query: 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277
              +  L GH + +   ++  ++   +S S D +IR+WD+
Sbjct: 302 CLYI--LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339



 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H   VR V  H +  + VSG  D  + VW+    +CL+ L GH D I +  + HE    +
Sbjct: 269 HMASVRTVSGHGN--IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
           SAS D TIRIW+ ++   +  L GH   V       K   +VSA+ D ++R WD     +
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSR 384

Query: 170 K 170
           K
Sbjct: 385 K 385



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 124/330 (37%), Gaps = 62/330 (18%)

Query: 23  WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82
           +++      +I+++D      + +   HDG V  + +     + VSG  D  ++VW+ K 
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKK 192

Query: 83  HRCLFTLLGHLDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTC------------- 127
             C     GH   +R +    +    +IV+ S D T+ +W     +              
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252

Query: 128 ----------ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177
                     + VL GH   V   S H   ++VVS S D T+ VWD+  ++         
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSYDNTLIVWDVAQMK--------- 301

Query: 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237
                               Y+L GH   +    +       +S + D  +++W +   +
Sbjct: 302 ------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343

Query: 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILA 297
              + TL+GH   V  +    K   +VS + D SIR WD    +  + F   H     + 
Sbjct: 344 L--MYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAIT 397

Query: 298 S-HPEMNLLAAGHDSGMIVFKLERERPAFA 326
           + +   N+L +G ++   ++ L   +   A
Sbjct: 398 TFYVSDNILVSGSENQFNIYNLRSGKLVHA 427



 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 36/183 (19%)

Query: 129 SVLTGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187
           + L GH    + C  F  +++ V++ + D+ +RV+D  ++ KK       +L+LS     
Sbjct: 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYD--SINKKF------LLQLS----- 159

Query: 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247
                         GHD GV WA  +    ++VSG+ DR V++W +   K        GH
Sbjct: 160 --------------GHDGGV-WALKYAHGGILVSGSTDRTVRVWDIK--KGCCTHVFEGH 202

Query: 248 MNNVSCVMFHAKQDI--IVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLL 305
            + V C+     ++I  IV+ S D ++ VW + K + V     EHD + ++   PE N  
Sbjct: 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPY 261

Query: 306 AAG 308
             G
Sbjct: 262 FVG 264


>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 1
 pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
           In Complex With Initiation Factor 1. This File Contains
           The 40s Subunit And Initiation Factor For Molecule 2
          Length = 343

 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 125/277 (45%), Gaps = 35/277 (12%)

Query: 60  HKSQPLFVSGGDDYKIKVWN-YKMHRCLF------TLLGHLDYIRTVQFHHEYPWIVSAS 112
           ++  P+ +SG  D  + +W  Y+  +  +       L GH  ++  +    E  + +S+S
Sbjct: 36  NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95

Query: 113 DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172
            D+T+R+W+ ++ T      GH   V   +F P    ++SA  ++ +++W+I  L +   
Sbjct: 96  WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI--LGECKF 153

Query: 173 SPADDILRLSQMNTDLFGGVDAVVKY--VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230
           S A+      + ++D      + V+Y  +++  ++        P  P   S   D ++K+
Sbjct: 154 SSAE-----KENHSDWV----SCVRYSPIMKSANK------VQPFAPYFASVGWDGRLKV 198

Query: 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290
           W  N    +   T + H +NV+ +        I +  +DK + +WD+   T  Q   RE 
Sbjct: 199 WNTNFQIRY---TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ---REF 252

Query: 291 D---RFWILASHPEMNLLAAGHDSGMIVFKLERERPA 324
           D       +A +P++  +A G D G+ +F L  +  A
Sbjct: 253 DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKA 289



 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 21/159 (13%)

Query: 192 VDAVVKYVLEGHDRGVNW--AAF----HPTLPLIVSGADDRQVKLWRMNETK-----AWE 240
           +  V + +LEGH   V    A F    +   P+++SG+ D+ V +W++ E +        
Sbjct: 9   IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP 68

Query: 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300
              L GH + VS +    +    +S+S DK++R+WD+   T  + F       + +A  P
Sbjct: 69  HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128

Query: 301 E-MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDR 338
           +   +L+AG          ERE   + + G+  F + ++
Sbjct: 129 DNRQILSAG---------AEREIKLWNILGECKFSSAEK 158



 Score = 42.7 bits (99), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 28/172 (16%)

Query: 130 VLTGHNHYV--MCASFHPKED----LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183
           +L GH+ +V  + A F  KE+    +++S S D+TV +W +                  +
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL----------------YEE 59

Query: 184 MNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243
                FG    +    L GH+  V+  A        +S + D+ ++LW +     ++   
Sbjct: 60  EQNGYFG----IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK--R 113

Query: 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWI 295
             GH + V  V F      I+S   ++ I++W++       +  +E+   W+
Sbjct: 114 FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165



 Score = 30.8 bits (68), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 64  PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
           P F S G D ++KVWN    +  +T   H   +  +       +I +   D+ + IW+  
Sbjct: 185 PYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243

Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172
           + T           +   +F+PK   V   + DQ V+++++    K  V
Sbjct: 244 NLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPV 291


>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
          Length = 345

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 29/216 (13%)

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLL---GHLDYIRTVQFHHEYPWIVSASDDQTIRIW- 120
           L  S G D +I++W  +    +   +   GH   +R V +     ++ SAS D T  IW 
Sbjct: 30  LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89

Query: 121 -NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179
            N     C++ L GH + V   ++ P  +L+ + S D++V VW++               
Sbjct: 90  KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD-------------- 135

Query: 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239
                  D +  V      VL  H + V    +HP+  L+ S + D  VKL+R  E    
Sbjct: 136 -----EEDEYECVS-----VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV 185

Query: 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275
              TL GH + V  + F      + S S+D+++R+W
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221



 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 30/189 (15%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVW--NYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107
           H   VR V +        S   D    +W  N     C+ TL GH + +++V +      
Sbjct: 60  HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119

Query: 108 IVSASDDQTIRIWNWQSR---TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
           + + S D+++ +W         C+SVL  H   V    +HP ++L+ SAS D TV+    
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK---- 175

Query: 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224
                           L +   D     D V    LEGH+  V   AF P+   + S +D
Sbjct: 176 ----------------LYREEED-----DWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214

Query: 225 DRQVKLWRM 233
           DR V++WR 
Sbjct: 215 DRTVRIWRQ 223



 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 191 GVDAVVKYVL-EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249
           G   + K VL EGH R V   A+ P    + S + D    +W+ N+     V TL GH N
Sbjct: 47  GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN 106

Query: 250 NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR---TGVQTFRREHDRFWILASHPEMNLLA 306
            V  V +    +++ + S DKS+ VW+V +      V            +  HP   LLA
Sbjct: 107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166

Query: 307 -AGHDSGMIVFKLERE 321
            A +D  + +++ E +
Sbjct: 167 SASYDDTVKLYREEED 182



 Score = 33.9 bits (76), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 211 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL--RGHMNNVSCVMFHAKQDIIVSNSE 268
           A++P   L+ S   DR++++W   E  +W   ++   GH   V  V +    + + S S 
Sbjct: 23  AWNPAGTLLASCGGDRRIRIW-GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81

Query: 269 DKSIRVWDVTKR--TGVQTFRREHDRFWILASHPEMNLLA-AGHDSGMIVFKLERERPAF 325
           D +  +W   +     V T     +    +A  P  NLLA    D  + V++++ E    
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141

Query: 326 AVS 328
            VS
Sbjct: 142 CVS 144


>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
           Trypanosoma Brucei Ribosome
          Length = 318

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 33  IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-- 90
           ++LW+ + G    +F  H   V  V F       VSGG D  ++VWN K   C+ TL   
Sbjct: 91  LRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRG 149

Query: 91  GHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148
            H D++  V+F    + P IVS   D  +++W+  +   ++ L GH +YV   +  P   
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209

Query: 149 LVVSASLDQTVRVWDI 164
           L  S+  D   R+WD+
Sbjct: 210 LCASSDKDGVARLWDL 225



 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 36/249 (14%)

Query: 46  RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY 105
           R + H   V  V    +    VS   D+ +++WN +  +C +  LGH   + +V F  + 
Sbjct: 62  RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121

Query: 106 PWIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVMCASFHPKED--LVVSASLDQTVRV 161
             IVS   D  +R+WN +   C+  L+   H  +V C  F P  D  ++VS   D  V+V
Sbjct: 122 RQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180

Query: 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS 221
           WD+   R               + TD            L+GH   V      P   L  S
Sbjct: 181 WDLATGR---------------LVTD------------LKGHTNYVTSVTVSPDGSLCAS 213

Query: 222 GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281
              D   +LW + + +A         +N    + F   +  + + +E K IR++D+  + 
Sbjct: 214 SDKDGVARLWDLTKGEALSEMAAGAPINQ---ICFSPNRYWMCAATE-KGIRIFDLENKD 269

Query: 282 GVQTFRREH 290
            +     EH
Sbjct: 270 IIVELAPEH 278


>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
           Resolution Of 2.45 Angstrom
 pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
           Resolution Of 2.45 Angstrom
 pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
           Resolution Of 2.45 Angstrom
          Length = 340

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 25  LASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84
           L+    G ++LWD   GT   RF  H   V  V F       VSG  D  IK+WN  +  
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGV 160

Query: 85  CLFTLL--GHLDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMC 140
           C +T+    H +++  V+F  +   P IVS   D+ +++WN  +    +   GH  Y+  
Sbjct: 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 220

Query: 141 ASFHPKEDLVVSASLDQTVRVWDI 164
            +  P   L  S   D    +WD+
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWDL 244



 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 123/299 (41%), Gaps = 29/299 (9%)

Query: 42  TLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLF-----TLLGHLDY 95
           TL      H+G V  +      P + +S   D  I +W        +      L GH  +
Sbjct: 29  TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88

Query: 96  IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155
           +  V    +  + +S S D T+R+W+  + T      GH   V+  +F      +VS S 
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148

Query: 156 DQTVRVWDIGALRKKTV-----SPADDILRLSQMNTD---LFGGVDAVVK-YVLE----- 201
           D+T+++W+   + K TV     S     +R S  +++   +  G D +VK + L      
Sbjct: 149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208

Query: 202 ----GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
               GH   +N     P   L  SG  D Q  LW +NE K   + TL G  + ++ + F 
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGG-DIINALCFS 265

Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF 316
             +  + + +   SI++WD+  +  V   ++E       A  P+   LA   D G  +F
Sbjct: 266 PNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD-GQTLF 322



 Score = 41.6 bits (96), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 25/174 (14%)

Query: 4   KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVHF--H 60
           +F   +  V  ++F S    I++      I+LW+          DE H   V  V F  +
Sbjct: 123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
            S P+ VS G D  +KVWN    +     +GH  Y+ TV    +     S   D    +W
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242

Query: 121 NWQSRTCISVLTGH----------NHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
           +      +  L G           N Y +CA+  P            ++++WD+
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGP------------SIKIWDL 284


>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
           80s Complex Obtained By Docking Homology Models Of The
           Rna And Proteins Into An 8.7 A Cryo-Em Map
          Length = 317

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 25  LASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84
           L+    G ++LWD   GT   RF  H   V  V F       VSG  D  IK+WN  +  
Sbjct: 79  LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGV 137

Query: 85  CLFTLL--GHLDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMC 140
           C +T+    H +++  V+F  +   P IVS   D+ +++WN  +    +   GH  Y+  
Sbjct: 138 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT 197

Query: 141 ASFHPKEDLVVSASLDQTVRVWDI 164
            +  P   L  S   D    +WD+
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWDL 221



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 120/299 (40%), Gaps = 29/299 (9%)

Query: 42  TLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLF-----TLLGHLDY 95
           TL      H+G V  +      P + +S   D  I +W        +      L GH  +
Sbjct: 6   TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 65

Query: 96  IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155
           +  V    +  + +S S D T+R+W+  + T      GH   V+  +F      +VS S 
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125

Query: 156 DQTVRVWDIGALRKKTV-----SPADDILRLSQMNTD---LFGGVDAVVK-YVLE----- 201
           D+T+++W+   + K TV     S     +R S  +++   +  G D +VK + L      
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185

Query: 202 ----GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
               GH   +N     P   L  SG  D Q  LW +NE K   + TL G   ++   +  
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--HLYTLDG--GDIINALCF 241

Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF 316
           +     +  +   SI++WD+  +  V   ++E       A  P+   LA   D G  +F
Sbjct: 242 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD-GQTLF 299



 Score = 41.2 bits (95), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 25/174 (14%)

Query: 4   KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVHF--H 60
           +F   +  V  ++F S    I++      I+LW+          DE H   V  V F  +
Sbjct: 100 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 159

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
            S P+ VS G D  +KVWN    +     +GH  Y+ TV    +     S   D    +W
Sbjct: 160 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219

Query: 121 NWQSRTCISVLTGH----------NHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
           +      +  L G           N Y +CA+  P            ++++WD+
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGP------------SIKIWDL 261


>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
          Length = 330

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 42/207 (20%)

Query: 42  TLIDRFDE--HDGPVRGVHFHKSQPLFVSGGDDYKIKVW--------NYKMHRCLFTLLG 91
           TLID  DE  H   +R V +     L  +G  D  + +W         ++M   L  + G
Sbjct: 47  TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD-LLAIIEG 105

Query: 92  HLDYIRTVQFHHEYPWIVSASDDQTIRIW----NWQSRTCISVLTGHNHYVMCASFHPKE 147
           H + ++ V + ++  ++ + S D+++ IW    + +   CISVL  H+  V    +HP E
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165

Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
            L+ S+S D TVR+W             DD               D     VL GH+  V
Sbjct: 166 ALLASSSYDDTVRIW----------KDYDD---------------DWECVAVLNGHEGTV 200

Query: 208 NWAAFHPTLPL--IVSGADDRQVKLWR 232
             + F  T  +  + SG+DD  V++W+
Sbjct: 201 WSSDFDKTEGVFRLCSGSDDSTVRVWK 227



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 42/233 (18%)

Query: 59  FHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD------YIRTVQFHHEYPWIVSAS 112
           F  SQ +  +G  D KIK+ + K     FTL+  LD       IR+V +      + + S
Sbjct: 20  FDFSQGILATGSTDRKIKLVSVKYDD--FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77

Query: 113 DDQTIRIWNWQS---RT----CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165
            D T+ IW  +    RT     ++++ GH + V   ++      + + S D++V +W+  
Sbjct: 78  FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE-- 135

Query: 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225
                               TD  G     +  VL+ H + V    +HP+  L+ S + D
Sbjct: 136 --------------------TDESGEEYECIS-VLQEHSQDVKHVIWHPSEALLASSSYD 174

Query: 226 RQVKLWRMNETKAWE-VDTLRGHMNNVSCVMFHAKQDI--IVSNSEDKSIRVW 275
             V++W+ +    WE V  L GH   V    F   + +  + S S+D ++RVW
Sbjct: 175 DTVRIWK-DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226



 Score = 38.5 bits (88), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 1   MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRG 56
           +L   E   N VKG+++ +   ++        + +W+          I    EH   V+ 
Sbjct: 99  LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158

Query: 57  VHFHKSQPLFVSGGDDYKIKVW-NYKMH-RCLFTLLGHLDYIRTVQFHHEYPW--IVSAS 112
           V +H S+ L  S   D  +++W +Y     C+  L GH   + +  F        + S S
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218

Query: 113 DDQTIRIW 120
           DD T+R+W
Sbjct: 219 DDSTVRVW 226



 Score = 38.1 bits (87), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 23/159 (14%)

Query: 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233
             D  ++L  +  D F  +D + +     H + +   A+ P   L+ +G+ D  V +W  
Sbjct: 31  STDRKIKLVSVKYDDFTLIDVLDE---TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87

Query: 234 NET--KAWEVDTL---RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ---- 284
            E+  + +E+D L    GH N V  V +      + + S DKS+ +W+ T  +G +    
Sbjct: 88  EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE-TDESGEEYECI 146

Query: 285 TFRREHDR-----FWILASHPEMNLLA-AGHDSGMIVFK 317
           +  +EH +      W    HP   LLA + +D  + ++K
Sbjct: 147 SVLQEHSQDVKHVIW----HPSEALLASSSYDDTVRIWK 181


>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
           CRYSTAL Structure
 pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
           CRYSTAL Structure
          Length = 354

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 110/307 (35%), Gaps = 35/307 (11%)

Query: 10  NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG 69
           N+V  + +   +  I++S   G + +WD                V    +  S      G
Sbjct: 65  NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACG 124

Query: 70  GDDYKIKVW------NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
           G D K  V+      N  M     ++  H +Y+    F +    I++AS D T  +W+ +
Sbjct: 125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE 184

Query: 124 SRTCISVLTGHNHYVMCASFHPKE--DLVVSASLDQTVRVWDIGALRKKTVSPADDILRL 181
           S   +    GH   V+C    P E  +  VS   D+   VWD               +R 
Sbjct: 185 SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD---------------MRS 229

Query: 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241
            Q                 E H+  VN   ++P+     SG+DD   +L+ +   +   +
Sbjct: 230 GQ------------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277

Query: 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301
            +    +   S V F     ++ +   D +I VWDV K + V       +R   L   P+
Sbjct: 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337

Query: 302 MNLLAAG 308
                +G
Sbjct: 338 GTAFCSG 344



 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 31/227 (13%)

Query: 9   SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LF 66
           +N +   SF +    IL +   G   LWD   G L+  F  H   V  +    S+    F
Sbjct: 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213

Query: 67  VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126
           VSGG D K  VW+ +  +C+     H   + +V+++       S SDD T R+++ ++  
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273

Query: 127 CISVLTGHNHYVMCAS--FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184
            +++ +  +     +S  F     L+ +   D T+ VWD+  L+   VS           
Sbjct: 274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV--LKGSRVS----------- 320

Query: 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231
                         +L GH+  V+     P      SG+ D  +++W
Sbjct: 321 --------------ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353



 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK--TVSPADDILRLSQMNTD 187
            L GH + V+C  +   +  +VS+S D  V VWD     K+     P   ++  +   + 
Sbjct: 59  TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118

Query: 188 L---FGGVDAVVKYVLEGHDRGVNWAAFHPTLPL----------------IVSGADDRQV 228
                GG+D          D+  N AA   ++ +                I++ + D   
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 178

Query: 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ--DIIVSNSEDKSIRVWDVTKRTGVQTF 286
            LW +   +   + +  GH  +V C+     +  +  VS   DK   VWD+     VQ F
Sbjct: 179 ALWDVESGQL--LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236

Query: 287 RREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFAVSGDSLFYA 335
                    +  +P  +  A+G D     ++ L  +R     S +S+ + 
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286


>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 380

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 101/260 (38%), Gaps = 48/260 (18%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H G V  + +   +   VS   D ++ VWN    +    +  H  ++    F      + 
Sbjct: 65  HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA 124

Query: 110 SASDDQTIRIWNWQSRT-------CISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRV 161
               D    I+N  S+           VLTGH  Y     + P +E  +++ S DQT  +
Sbjct: 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVL 184

Query: 162 WDIGALRKKTVSPAD-------DILRLS--QMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212
           WD+   ++ ++  ++       D+L LS   +N ++F                       
Sbjct: 185 WDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF----------------------- 221

Query: 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSI 272
                  +SG+ D  V+LW +  T    V T  GH  +++ V F        + S+D + 
Sbjct: 222 -------ISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273

Query: 273 RVWDVTKRTGVQTFRREHDR 292
           R++D+     +Q + RE DR
Sbjct: 274 RLFDMRTGHQLQVYNREPDR 293



 Score = 35.4 bits (80), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 52/258 (20%)

Query: 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK----KTVSP-ADDILRL 181
           C   L GH+  V    + P+++ +VSAS D  + VW+    +K    K   P   +    
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117

Query: 182 SQMNTDLFGGVDAV-----------------VKYVLEGHDRGVNWAAFHPTLPL-IVSGA 223
               +   GG+D+                  V  VL GH    +   + P     +++G+
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177

Query: 224 DDRQVKLWRMNETKAWEV---DTLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWD--V 277
            D+   LW +   +   +   +   GH  +V  +  ++   ++ +S S D ++R+WD  +
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237

Query: 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG------------MIVFKLERERP-- 323
           T R  V+T+         +   P+      G D G            + V+  E +R   
Sbjct: 238 TSR-AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296

Query: 324 --------AFAVSGDSLF 333
                   AF++SG  LF
Sbjct: 297 ELPIVTSVAFSISGRLLF 314


>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
          Length = 321

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 23/277 (8%)

Query: 39  RMGTLIDRFDEHDGPVR----GVHFHKSQPLFVSGGDDYKIKVWNYKMHRC--LFTLLGH 92
           + G L  +   HD  +     G +  ++    V+G  D  +KVW ++  R    ++L GH
Sbjct: 20  QYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH 79

Query: 93  LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152
              + +V   H  P   S+S D  IR+W+ ++   I  +          +F P    + +
Sbjct: 80  QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139

Query: 153 ASLDQTVRVWDIGALRKK-------------TVSPADDILRLSQMN--TDLFGGVDAVVK 197
            +    V ++ + + +K+               SP    L    ++   ++F      + 
Sbjct: 140 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199

Query: 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257
           + LEGH   +    F P   L+V+ +DD  +K++ +         TL GH + V  V F 
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL--AGTLSGHASWVLNVAFC 257

Query: 258 AKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW 294
                 VS+S DKS++VWDV  RT V TF    D+ W
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294



 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 76/159 (47%)

Query: 5   FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP 64
            +T+   +  +++     ++ +    G+I ++D   G L+   + H  P+R + F     
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219

Query: 65  LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
           L V+  DD  IK+++ +      TL GH  ++  V F  +    VS+S D+++++W+  +
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279

Query: 125 RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
           RTC+     H   V    ++     +VS   DQ + ++D
Sbjct: 280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318



 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%)

Query: 15  LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74
           L+F     ++    H G + ++    G      D     +  + +        SG  D  
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187

Query: 75  IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH 134
           I +++    + L TL GH   IR++ F  +   +V+ASDD  I+I++ Q       L+GH
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247

Query: 135 NHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165
             +V+  +F P +   VS+S D++V+VWD+G
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278



 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 33/188 (17%)

Query: 219 IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278
           +V+G+ D  VK+W+  + +     +L GH   V  V       I  S+S D  IR+WD+ 
Sbjct: 51  VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110

Query: 279 KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAF------------ 325
               +++        W LA  P+   LA G   G + +F +E  +  +            
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170

Query: 326 AVSGDSLFYAK---DRFLRYYEFSTQK-----DTQVIPIRRPGSTSLNQSPRTLSYSPTE 377
           A S D  + A    D  +  ++ +T K     +   +PI            R+L++SP  
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI------------RSLTFSPDS 218

Query: 378 NAVLICSD 385
             ++  SD
Sbjct: 219 QLLVTASD 226



 Score = 39.7 bits (91), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%)

Query: 1   MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH 60
           +L   E  +  ++ L+F      ++ +   G I+++D +   L      H   V  V F 
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257

Query: 61  KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120
                FVS   D  +KVW+     C+ T   H D +  V+++     IVS  DDQ I I+
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317

Query: 121 N 121
           +
Sbjct: 318 D 318


>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
           Protein Complex
          Length = 351

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H G +    F     +  S GD     +W+ +  +   T  GH   + ++    +    V
Sbjct: 153 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 211

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
           S + D + ++W+ +   C    TGH   +    F P  +   + S D T R++D+ A ++
Sbjct: 212 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271

Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
                 D+I+                          G+   +F  +  L+++G DD    
Sbjct: 272 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 306

Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
           +W  +  KA     L GH N VSC+        + + S D  +++W+
Sbjct: 307 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 34  QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
           +LWD R G     F  H+  +  + F  +   F +G DD   ++++ +  + L T   H 
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 278

Query: 94  DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
           +    I +V F      +++  DD    +W+        VL GH++ V C         V
Sbjct: 279 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 338

Query: 151 VSASLDQTVRVWD 163
            + S D  +++W+
Sbjct: 339 ATGSWDSFLKIWN 351



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)

Query: 24  ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
           I+ S       LWD   G     F  H G V  +       LFVSG  D   K+W+ +  
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227

Query: 84  RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
            C  T  GH   I  + F        + SDD T R+++ ++     ++T  +  ++C   
Sbjct: 228 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 285

Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
             SF     L+++   D    VWD
Sbjct: 286 SVSFSKSGRLLLAGYDDFNCNVWD 309



 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)

Query: 88  TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
           TL GHL  I  + +  +   +VSAS D  + IW+  +   +  +   + +VM  ++ P  
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120

Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
           + V    LD    ++++   R+  V                       V   L GH   +
Sbjct: 121 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 157

Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
           +   F      IV+ + D    LW +   +     T  GH  +V  +       + VS +
Sbjct: 158 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 214

Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
            D S ++WDV +    QTF         +   P  N  A G D     +F L  ++    
Sbjct: 215 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274

Query: 327 VSGDSLF 333
            S D++ 
Sbjct: 275 YSHDNII 281


>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
           The Gt-Beta-Gamma Subunits
 pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
 pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
           Regulated Interaction With Transducin
 pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
           Regulated Interaction With Transducin Beta-Gamma
          Length = 340

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H G +    F     +  S GD     +W+ +  +   T  GH   + ++    +    V
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
           S + D + ++W+ +   C    TGH   +    F P  +   + S D T R++D+ A ++
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
                 D+I+                          G+   +F  +  L+++G DD    
Sbjct: 261 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
           +W  +  KA     L GH N VSC+        + + S D  +++W+
Sbjct: 296 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 34  QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
           +LWD R G     F  H+  +  + F  +   F +G DD   ++++ +  + L T   H 
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 267

Query: 94  DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
           +    I +V F      +++  DD    +W+        VL GH++ V C         V
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327

Query: 151 VSASLDQTVRVWD 163
            + S D  +++W+
Sbjct: 328 ATGSWDSFLKIWN 340



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)

Query: 24  ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
           I+ S       LWD   G     F  H G V  +       LFVSG  D   K+W+ +  
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216

Query: 84  RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
            C  T  GH   I  + F        + SDD T R+++ ++     ++T  +  ++C   
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 274

Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
             SF     L+++   D    VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298



 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)

Query: 88  TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
           TL GHL  I  + +  +   ++SAS D  + IW+  +   +  +   + +VM  ++ P  
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
           + V    LD    ++++   R+  V                       V   L GH   +
Sbjct: 110 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 146

Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
           +   F      IV+ + D    LW +   +     T  GH  +V  +       + VS +
Sbjct: 147 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 203

Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
            D S ++WDV +    QTF         +   P  N  A G D     +F L  ++    
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 327 VSGDSLF 333
            S D++ 
Sbjct: 264 YSHDNII 270


>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
          Length = 340

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H G +    F     +  S GD     +W+ +  +   T  GH   + ++    +    V
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
           S + D + ++W+ +   C    TGH   +    F P  +   + S D T R++D+ A ++
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
                 D+I+                          G+   +F  +  L+++G DD    
Sbjct: 261 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
           +W  +  KA     L GH N VSC+        + + S D  +++W+
Sbjct: 296 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 34  QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
           +LWD R G     F  H+  +  + F  +   F +G DD   ++++ +  + L T   H 
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 267

Query: 94  DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
           +    I +V F      +++  DD    +W+        VL GH++ V C         V
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327

Query: 151 VSASLDQTVRVWD 163
            + S D  +++W+
Sbjct: 328 ATGSWDSFLKIWN 340



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)

Query: 24  ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
           I+ S       LWD   G     F  H G V  +       LFVSG  D   K+W+ +  
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216

Query: 84  RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
            C  T  GH   I  + F        + SDD T R+++ ++     ++T  +  ++C   
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 274

Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
             SF     L+++   D    VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298



 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)

Query: 88  TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
           TL GHL  I  + +  +   ++SAS D  + IW+  +   +  +   + +VM  ++ P  
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
           + V    LD    ++++   R+  V                       V   L GH   +
Sbjct: 110 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 146

Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
           +   F      IV+ + D    LW +   +     T  GH  +V  +       + VS +
Sbjct: 147 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 203

Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
            D S ++WDV +    QTF         +   P  N  A G D     +F L  ++    
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 327 VSGDSLF 333
            S D++ 
Sbjct: 264 YSHDNII 270


>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
           Gamma_2 With Gdp Bound
 pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
           Bound
 pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
           Transducin
 pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
           Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
           And Gamma 2 Subunits
 pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
           (Sigk) Bound To A G Protein Beta:gamma Heterodimer
 pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
 pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
           (Soak)
 pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
           (Co-Crystal)
 pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
           In Complex With An Inhibitor Ym-254890
 pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
 pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
           Selective Kinase Inhibitor (Cmpd101)
 pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
           Selective Kinase Inhibitor (Cmpd103a)
 pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
           Protein-Coupled Receptor Kinase 2-Heterotrimeric G
           Protein Beta 1 And Gamma 2 Subunit Complex
 pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
           Soluble Gbetagamma Subunits And Paroxetine
          Length = 340

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H G +    F     +  S GD     +W+ +  +   T  GH   + ++    +    V
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
           S + D + ++W+ +   C    TGH   +    F P  +   + S D T R++D+ A ++
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
                 D+I+                          G+   +F  +  L+++G DD    
Sbjct: 261 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
           +W  +  KA     L GH N VSC+        + + S D  +++W+
Sbjct: 296 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 34  QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
           +LWD R G     F  H+  +  + F  +   F +G DD   ++++ +  + L T   H 
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 267

Query: 94  DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
           +    I +V F      +++  DD    +W+        VL GH++ V C         V
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327

Query: 151 VSASLDQTVRVWD 163
            + S D  +++W+
Sbjct: 328 ATGSWDSFLKIWN 340



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)

Query: 24  ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
           I+ S       LWD   G     F  H G V  +       LFVSG  D   K+W+ +  
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216

Query: 84  RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
            C  T  GH   I  + F        + SDD T R+++ ++     ++T  +  ++C   
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 274

Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
             SF     L+++   D    VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298



 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)

Query: 88  TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
           TL GHL  I  + +  +   +VSAS D  + IW+  +   +  +   + +VM  ++ P  
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
           + V    LD    ++++   R+  V                       V   L GH   +
Sbjct: 110 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 146

Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
           +   F      IV+ + D    LW +   +     T  GH  +V  +       + VS +
Sbjct: 147 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 203

Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
            D S ++WDV +    QTF         +   P  N  A G D     +F L  ++    
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 327 VSGDSLF 333
            S D++ 
Sbjct: 264 YSHDNII 270


>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
           In Complex With Galpha-q And Gbetagamma Subunits
          Length = 340

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 28/227 (12%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H G +    F     +  S GD     +W+ +  +   T  GH   + ++    +    V
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
           S + D + ++W+ +   C    TGH   +    F P  +   + S D T R++D+ A ++
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

Query: 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229
                 D+I+                          G+   +F  +  L+++G DD    
Sbjct: 261 LMTYSHDNII-------------------------CGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
           +W  +  KA     L GH N VSC+        + + S D  +++W+
Sbjct: 296 VW--DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 34  QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93
           +LWD R G     F  H+  +  + F  +   F +G DD   ++++ +  + L T   H 
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YSHD 267

Query: 94  DY---IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150
           +    I +V F      +++  DD    +W+        VL GH++ V C         V
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327

Query: 151 VSASLDQTVRVWD 163
            + S D  +++W+
Sbjct: 328 ATGSWDSFLKIWN 340



 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 6/144 (4%)

Query: 24  ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
           I+ S       LWD   G     F  H G V  +       LFVSG  D   K+W+ +  
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216

Query: 84  RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-- 141
            C  T  GH   I  + F        + SDD T R+++ ++     ++T  +  ++C   
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGIT 274

Query: 142 --SFHPKEDLVVSASLDQTVRVWD 163
             SF     L+++   D    VWD
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWD 298



 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 27/247 (10%)

Query: 88  TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
           TL GHL  I  + +  +   +VSAS D  + IW+  +   +  +   + +VM  ++ P  
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
           + V    LD    ++++   R+  V                       V   L GH   +
Sbjct: 110 NYVACGGLDNICSIYNL-KTREGNVR----------------------VSRELAGHTGYL 146

Query: 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267
           +   F      IV+ + D    LW +   +     T  GH  +V  +       + VS +
Sbjct: 147 SCCRFLDD-NQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGA 203

Query: 268 EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLERERPAFA 326
            D S ++WDV +    QTF         +   P  N  A G D     +F L  ++    
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 327 VSGDSLF 333
            S D++ 
Sbjct: 264 YSHDNII 270


>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
 pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
          Length = 313

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 123/301 (40%), Gaps = 46/301 (15%)

Query: 31  GVIQLW---DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK---VWNYKMHR 84
           G ++LW   D  +GT++       G +  V +   + L + GG D  I    ++      
Sbjct: 39  GTVRLWSKDDQWLGTVVYT---GQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGED 95

Query: 85  CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144
            L+TL+GH   + ++ F      ++S S D+T ++W  +  + +  L  HN  V  A   
Sbjct: 96  PLYTLIGHQGNVCSLSFQDGV--VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVV 151

Query: 145 P-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203
              E+  ++AS D+T+++W    + K      +D++R               +  V +GH
Sbjct: 152 SFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRH--------------LAVVDDGH 197

Query: 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDII 263
                           +S ++D  +KL   +      + T  GH + V C+      DI 
Sbjct: 198 ---------------FISCSNDGLIKLVDXHTGDV--LRTYEGHESFVYCIKLLPNGDI- 239

Query: 264 VSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323
           VS  ED+++R+W     +  Q         W +      +++    D+ + +F  E+ R 
Sbjct: 240 VSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKSRW 299

Query: 324 A 324
           A
Sbjct: 300 A 300



 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 38  YRMGTLIDRFDEHDGPV---RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG-HL 93
           ++ G+L+     H+  V   + V F  S+  F++   D  IK+W  +  + + T  G H 
Sbjct: 129 WKEGSLVYNLQAHNASVWDAKVVSF--SENKFLTASADKTIKLW--QNDKVIKTFSGIHN 184

Query: 94  DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153
           D +R +    +  +I S S+D  I++ +  +   +    GH  +V C    P  D +VS 
Sbjct: 185 DVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSC 242

Query: 154 SLDQTVRVW--DIGALRKKTVSPADDILRLS-QMNTDLF-GGVDAVVKYVLEGHDRGVNW 209
             D+TVR+W  + G+L++    PA  I  +    N D+  G  D +V+   +   R   W
Sbjct: 243 GEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKSR---W 299

Query: 210 AA 211
           A+
Sbjct: 300 AS 301


>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
           Histone H4
          Length = 414

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 43/238 (18%)

Query: 108 IVSASDDQTIRIWNWQSR-------TCISVLTGHNHYVMCASFH-PKEDLVVSASLDQTV 159
           ++SASDD T+ +W+  +           ++ TGH+  V   ++H   E L  S + DQ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254

Query: 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219
            +WD    R  T S                        ++++ H   VN  +F+P    I
Sbjct: 255 MIWDT---RSNTTSKP---------------------SHLVDAHTAEVNCLSFNPYSEFI 290

Query: 220 V-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDV 277
           + +G+ D+ V LW +   K  ++ T   H + +  V +    + I+ S+  D+ + VWD+
Sbjct: 291 LATGSADKTVALWDLRNLKL-KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

Query: 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF--AVSGDSLF 333
           +K    Q+     D        PE+  +  GH + +  F      P    +VS D++ 
Sbjct: 350 SKIGEEQSAEDAED------GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 401



 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 56/243 (23%)

Query: 66  FVSGGDDYKIKVWNYKM---------HRCLFTLLGHLDYIRTVQFH--HEYPWIVSASDD 114
            +S  DD+ + +W+             + +FT  GH   +  V +H  HE     S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHESL-FGSVADD 251

Query: 115 QTIRIWNWQSRTCIS---VLTGHNHYVMCASFHPKEDLVV-SASLDQTVRVWDIGALRKK 170
           Q + IW+ +S T      ++  H   V C SF+P  + ++ + S D+TV +WD+  L+ K
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311

Query: 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230
                  +        ++F                 V+W+  + T  ++ S   DR++ +
Sbjct: 312 -------LHTFESHKDEIF----------------QVHWSPHNET--ILASSGTDRRLNV 346

Query: 231 WRMN----ETKAWEVDT--------LRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDV 277
           W ++    E  A + +           GH   +S   ++  +  +I S SED  +++W +
Sbjct: 347 WDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406

Query: 278 TKR 280
            + 
Sbjct: 407 AEN 409



 Score = 40.8 bits (94), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 109/239 (45%), Gaps = 29/239 (12%)

Query: 14  GLSFHSK-RPWILASLHSGVIQLWDY----RMGTLIDR---FDEHDGPVRGVHFHK-SQP 64
           GLS++S     +L++     + LWD     + G ++D    F  H   V  V +H   + 
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243

Query: 65  LFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
           LF S  DD K+ +W+ + +   +    +  H   +  + F+    +I+ + S D+T+ +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303

Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
           + ++ +  +     H   +    + P  E ++ S+  D+ + VWD+  + ++        
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-------- 355

Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET 236
               Q   D   G   ++ ++  GH   ++  +++P  P +I S ++D  +++W+M E 
Sbjct: 356 ----QSAEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409


>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
           Histone H4
 pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
           Histone H4
          Length = 414

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 41/226 (18%)

Query: 108 IVSASDDQTIRIWNWQSR-------TCISVLTGHNHYVMCASFH-PKEDLVVSASLDQTV 159
           ++SASDD T+ +W+  +           ++ TGH+  V   ++H   E L  S + DQ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254

Query: 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219
            +WD    R  T S                        ++++ H   VN  +F+P    I
Sbjct: 255 XIWDT---RSNTTSKP---------------------SHLVDAHTAEVNCLSFNPYSEFI 290

Query: 220 V-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDV 277
           + +G+ D+ V LW +   K  ++ T   H + +  V +    + I+ S+  D+ + VWD+
Sbjct: 291 LATGSADKTVALWDLRNLKL-KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349

Query: 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323
           +K    Q+     D        PE+  +  GH + +  F      P
Sbjct: 350 SKIGEEQSAEDAED------GPPELLFIHGGHTAKISDFSWNPNEP 389



 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 18/120 (15%)

Query: 66  FVSGGDDYKIKVWNYKM---------HRCLFTLLGHLDYIRTVQFH--HEYPWIVSASDD 114
            +S  DD+ + +W+             + +FT  GH   +  V +H  HE     S +DD
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHESL-FGSVADD 251

Query: 115 QTIRIWNWQSRTCIS---VLTGHNHYVMCASFHPKEDLVV-SASLDQTVRVWDIGALRKK 170
           Q + IW+ +S T      ++  H   V C SF+P  + ++ + S D+TV +WD+  L+ K
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311



 Score = 37.7 bits (86), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 107/239 (44%), Gaps = 29/239 (12%)

Query: 14  GLSFHSK-RPWILASLHSGVIQLWDY----RMGTLIDR---FDEHDGPVRGVHFHK-SQP 64
           GLS++S     +L++     + LWD     + G ++D    F  H   V  V +H   + 
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243

Query: 65  LFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
           LF S  DD K+ +W+ + +   +    +  H   +  + F+    +I+ + S D+T+ +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303

Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
           + ++ +  +     H   +    + P  E ++ S+  D+ + VWD+  + ++        
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-------- 355

Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET 236
               Q   D   G   ++ ++  GH   ++  +++P  P +I S ++D   ++W+  E 
Sbjct: 356 ----QSAEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAEN 409


>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
 pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
 pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
          Length = 422

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 43/239 (17%)

Query: 107 WIVSASDDQTIRIWNWQSR-------TCISVLTGHNHYVMCASFH-PKEDLVVSASLDQT 158
           +++SASDD TI +W+  +           ++ TGH   V   ++H   E L  S + DQ 
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259

Query: 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218
           + +WD       T  P+                      + ++ H   VN  +F+P    
Sbjct: 260 LMIWD--TRNNNTSKPS----------------------HTVDAHTAEVNCLSFNPYSEF 295

Query: 219 IV-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWD 276
           I+ +G+ D+ V LW +   K  ++ +   H + +  V +    + I+ S+  D+ + VWD
Sbjct: 296 ILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354

Query: 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF--AVSGDSLF 333
           ++K    Q+     D        PE+  +  GH + +  F      P    +VS D++ 
Sbjct: 355 LSKIGEEQSTEDAED------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407



 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 29/198 (14%)

Query: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKK-TVSPADDILRLSQMNTDL 188
           L GH       S++P     ++SAS D T+ +WDI A  K+  V  A +I          
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI---------- 230

Query: 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW--RMNETKAWEVDTLRG 246
           F G  AVV+         V W   H +  L  S ADD+++ +W  R N T      T+  
Sbjct: 231 FTGHTAVVE--------DVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSK-PSHTVDA 279

Query: 247 HMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWIL--ASHPEM 302
           H   V+C+ F+   + I+ + S DK++ +WD+   +  + +F    D  + +  + H E 
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 339

Query: 303 NLLAAGHDSGMIVFKLER 320
            L ++G D  + V+ L +
Sbjct: 340 ILASSGTDRRLHVWDLSK 357



 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 29/239 (12%)

Query: 14  GLSFHSK-RPWILASLHSGVIQLWD-------YRMGTLIDRFDEHDGPVRGVHFHK-SQP 64
           GLS++     ++L++     I LWD       +R+    + F  H   V  V +H   + 
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 249

Query: 65  LFVSGGDDYKIKVW---NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
           LF S  DD K+ +W   N    +   T+  H   +  + F+    +I+ + S D+T+ +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309

Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
           + ++ +  +     H   +    + P  E ++ S+  D+ + VWD+  + ++        
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-------- 361

Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV-SGADDRQVKLWRMNET 236
               Q   D   G   ++ ++  GH   ++  +++P  P I+ S ++D  +++W+M E 
Sbjct: 362 ----QSTEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415


>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
 pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
          Length = 432

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 43/239 (17%)

Query: 107 WIVSASDDQTIRIWNWQSR-------TCISVLTGHNHYVMCASFH-PKEDLVVSASLDQT 158
           +++SASDD TI +W+  +           ++ TGH   V   ++H   E L  S + DQ 
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257

Query: 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218
           + +WD       T  P+                      + ++ H   VN  +F+P    
Sbjct: 258 LMIWD--TRNNNTSKPS----------------------HTVDAHTAEVNCLSFNPYSEF 293

Query: 219 IV-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWD 276
           I+ +G+ D+ V LW +   K  ++ +   H + +  V +    + I+ S+  D+ + VWD
Sbjct: 294 ILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352

Query: 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF--AVSGDSLF 333
           ++K    Q+     D        PE+  +  GH + +  F      P    +VS D++ 
Sbjct: 353 LSKIGEEQSTEDAED------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405



 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 29/198 (14%)

Query: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKK-TVSPADDILRLSQMNTDL 188
           L GH       S++P     ++SAS D T+ +WDI A  K+  V  A +I          
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI---------- 228

Query: 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW--RMNETKAWEVDTLRG 246
           F G  AVV+         V W   H +  L  S ADD+++ +W  R N T      T+  
Sbjct: 229 FTGHTAVVE--------DVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSK-PSHTVDA 277

Query: 247 HMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWIL--ASHPEM 302
           H   V+C+ F+   + I+ + S DK++ +WD+   +  + +F    D  + +  + H E 
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 337

Query: 303 NLLAAGHDSGMIVFKLER 320
            L ++G D  + V+ L +
Sbjct: 338 ILASSGTDRRLHVWDLSK 355



 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 29/239 (12%)

Query: 14  GLSFHSK-RPWILASLHSGVIQLWD-------YRMGTLIDRFDEHDGPVRGVHFHK-SQP 64
           GLS++     ++L++     I LWD       +R+    + F  H   V  V +H   + 
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 247

Query: 65  LFVSGGDDYKIKVW---NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
           LF S  DD K+ +W   N    +   T+  H   +  + F+    +I+ + S D+T+ +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307

Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
           + ++ +  +     H   +    + P  E ++ S+  D+ + VWD+  + ++        
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-------- 359

Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV-SGADDRQVKLWRMNET 236
               Q   D   G   ++ ++  GH   ++  +++P  P I+ S ++D  +++W+M E 
Sbjct: 360 ----QSTEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413


>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
          Length = 430

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 43/239 (17%)

Query: 107 WIVSASDDQTIRIWNWQSR-------TCISVLTGHNHYVMCASFH-PKEDLVVSASLDQT 158
           +++SASDD TI +W+  +           ++ TGH   V   ++H   E L  S + DQ 
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255

Query: 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218
           + +WD       T  P+                      + ++ H   VN  +F+P    
Sbjct: 256 LMIWD--TRNNNTSKPS----------------------HTVDAHTAEVNCLSFNPYSEF 291

Query: 219 IV-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWD 276
           I+ +G+ D+ V LW +   K  ++ +   H + +  V +    + I+ S+  D+ + VWD
Sbjct: 292 ILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350

Query: 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF--AVSGDSLF 333
           ++K    Q+     D        PE+  +  GH + +  F      P    +VS D++ 
Sbjct: 351 LSKIGEEQSTEDAED------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403



 Score = 50.4 bits (119), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 29/198 (14%)

Query: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKK-TVSPADDILRLSQMNTDL 188
           L GH       S++P     ++SAS D T+ +WDI A  K+  V  A +I          
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNI---------- 226

Query: 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW--RMNETKAWEVDTLRG 246
           F G  AVV+         V W   H +  L  S ADD+++ +W  R N T      T+  
Sbjct: 227 FTGHTAVVE--------DVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSK-PSHTVDA 275

Query: 247 HMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWIL--ASHPEM 302
           H   V+C+ F+   + I+ + S DK++ +WD+   +  + +F    D  + +  + H E 
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335

Query: 303 NLLAAGHDSGMIVFKLER 320
            L ++G D  + V+ L +
Sbjct: 336 ILASSGTDRRLHVWDLSK 353



 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 29/239 (12%)

Query: 14  GLSFHSK-RPWILASLHSGVIQLWD-------YRMGTLIDRFDEHDGPVRGVHFHK-SQP 64
           GLS++     ++L++     I LWD       +R+    + F  H   V  V +H   + 
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245

Query: 65  LFVSGGDDYKIKVW---NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIW 120
           LF S  DD K+ +W   N    +   T+  H   +  + F+    +I+ + S D+T+ +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305

Query: 121 NWQS-RTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178
           + ++ +  +     H   +    + P  E ++ S+  D+ + VWD+  + ++        
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-------- 357

Query: 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV-SGADDRQVKLWRMNET 236
               Q   D   G   ++ ++  GH   ++  +++P  P I+ S ++D  +++W+M E 
Sbjct: 358 ----QSTEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411


>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
          Length = 425

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 89  LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148
           L+GH   I  ++F+     ++SASDD T+RIW+  +    +   GH+  ++ AS+   +D
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW-VGDD 301

Query: 149 LVVSASLDQTVRVWDIGALRKKTV 172
            V+S S+D +VR+W   +L++ T+
Sbjct: 302 KVISCSMDGSVRLW---SLKQNTL 322



 Score = 41.2 bits (95), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVW---NYKMHRCLFTLLGHLDYIRTVQFHHEYP 106
           H GP+  + F+ +  L +S  DD  +++W   N     C +   GH   I +  +  +  
Sbjct: 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY---GHSQSIVSASWVGDDK 302

Query: 107 WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA 166
            ++S S D ++R+W+ +  T +++       +              A +D  V V+D+  
Sbjct: 303 -VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361

Query: 167 LRKKTVS 173
           L  K+ S
Sbjct: 362 LNSKSRS 368



 Score = 32.7 bits (73), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 21/91 (23%)

Query: 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259
           L GH   ++   F+ T  L++S +DD  +++W              G+ N+ +C   H++
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH------------GGNGNSQNCFYGHSQ 290

Query: 260 Q---------DIIVSNSEDKSIRVWDVTKRT 281
                     D ++S S D S+R+W + + T
Sbjct: 291 SIVSASWVGDDKVISCSMDGSVRLWSLKQNT 321


>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
 pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
 pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
          Length = 425

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 31/210 (14%)

Query: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189
           L GH       S++P     ++SAS D T+ +WDI A+ K+         ++    T +F
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEG--------KVVDAKT-IF 223

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW--RMNETKAWEVDTLRGH 247
            G  AVV+         V+W   H +  L  S ADD+++ +W  R N T      ++  H
Sbjct: 224 TGHTAVVE--------DVSWHLLHES--LFGSVADDQKLMIWDTRSNNTSK-PSHSVDAH 272

Query: 248 MNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWIL--ASHPEMN 303
              V+C+ F+   + I+ + S DK++ +WD+   +  + +F    D  + +  + H E  
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 332

Query: 304 LLAAGHDSGMIVFKL----ERERPAFAVSG 329
           L ++G D  + V+ L    E + P  A  G
Sbjct: 333 LASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362



 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 41/226 (18%)

Query: 108 IVSASDDQTIRIWNWQS-------RTCISVLTGHNHYVMCASFH-PKEDLVVSASLDQTV 159
           ++SASDD TI +W+  +           ++ TGH   V   S+H   E L  S + DQ +
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252

Query: 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219
            +WD  +    T  P+                      + ++ H   VN  +F+P    I
Sbjct: 253 MIWDTRS--NNTSKPS----------------------HSVDAHTAEVNCLSFNPYSEFI 288

Query: 220 V-SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDV 277
           + +G+ D+ V LW +   K  ++ +   H + +  V +    + I+ S+  D+ + VWD+
Sbjct: 289 LATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347

Query: 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323
           +K    Q+     D        PE+  +  GH + +  F      P
Sbjct: 348 SKIGEEQSPEDAED------GPPELLFIHGGHTAKISDFSWNPNEP 387



 Score = 42.7 bits (99), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 104/228 (45%), Gaps = 28/228 (12%)

Query: 24  ILASLHSGVIQLWDY----RMGTLIDR---FDEHDGPVRGVHFHK-SQPLFVSGGDDYKI 75
           +L++     I LWD     + G ++D    F  H   V  V +H   + LF S  DD K+
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252

Query: 76  KVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIWNWQS-RTCISV 130
            +W+ + +   +   ++  H   +  + F+    +I+ + S D+T+ +W+ ++ +  +  
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312

Query: 131 LTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189
              H   +    + P  E ++ S+  D+ + VWD+  + ++            Q   D  
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEE------------QSPEDAE 360

Query: 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET 236
            G   ++ ++  GH   ++  +++P  P +I S ++D  +++W+M E 
Sbjct: 361 DGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407


>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
           Degron Recognition By ApcC.
 pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
           Degron Recognition By ApcC
          Length = 431

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 44  IDRFDEHDGPVRGVHF--HKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100
           +  F +H G V+ V +   +S  L   GG  D  I++WN     CL  +  H   + ++ 
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 338

Query: 101 FHHEYPWIVSA---SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157
           +   Y  ++S    + +Q + IW + +   ++ L GH   V+  +  P    V SA+ D+
Sbjct: 339 WSPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 397

Query: 158 TVRVW 162
           T+R+W
Sbjct: 398 TLRLW 402



 Score = 36.2 bits (82), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 88/249 (35%), Gaps = 50/249 (20%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILAS-LHSGVIQLWDYRMGTL-IDRFDEHDGPVRGVHF 59
           L    + S RV  LS++S   +IL+S   SG I   D R+    +     H   V G+ +
Sbjct: 193 LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 249

Query: 60  HKSQPLFVSGGDDYKIKVWNYKMHRC----LFTLLGHLDYIRTVQFHHEYPW------IV 109
                   SGG+D  + VW           L T   H   ++ V +    PW        
Sbjct: 250 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW---CPWQSNVLATG 306

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCA---SFHPKEDLVVSASLDQTVRVWDIGA 166
             + D+ IRIWN  S  C+S +  H+   +C+   S H KE +         + +W    
Sbjct: 307 GGTSDRHIRIWNVCSGACLSAVDAHSQ--VCSILWSPHYKELISGHGFAQNQLVIWKYPT 364

Query: 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226
           + K                              L+GH   V      P    + S A D 
Sbjct: 365 MAKVA---------------------------ELKGHTSRVLSLTMSPDGATVASAAADE 397

Query: 227 QVKLWRMNE 235
            ++LWR  E
Sbjct: 398 TLRLWRCFE 406


>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
           Degron Recognition By ApcC
          Length = 420

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 44  IDRFDEHDGPVRGVHF--HKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100
           +  F +H G V+ V +   +S  L   GG  D  I++WN     CL  +  H   + ++ 
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 327

Query: 101 FHHEYPWIVSA---SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157
           +   Y  ++S    + +Q + IW + +   ++ L GH   V+  +  P    V SA+ D+
Sbjct: 328 WSPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386

Query: 158 TVRVW 162
           T+R+W
Sbjct: 387 TLRLW 391



 Score = 36.2 bits (82), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 88/249 (35%), Gaps = 50/249 (20%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILAS-LHSGVIQLWDYRMGTL-IDRFDEHDGPVRGVHF 59
           L    + S RV  LS++S   +IL+S   SG I   D R+    +     H   V G+ +
Sbjct: 182 LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 238

Query: 60  HKSQPLFVSGGDDYKIKVWNYKMHRC----LFTLLGHLDYIRTVQFHHEYPW------IV 109
                   SGG+D  + VW           L T   H   ++ V +    PW        
Sbjct: 239 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW---CPWQSNVLATG 295

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCA---SFHPKEDLVVSASLDQTVRVWDIGA 166
             + D+ IRIWN  S  C+S +  H+   +C+   S H KE +         + +W    
Sbjct: 296 GGTSDRHIRIWNVCSGACLSAVDAHSQ--VCSILWSPHYKELISGHGFAQNQLVIWKYPT 353

Query: 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226
           + K                              L+GH   V      P    + S A D 
Sbjct: 354 MAKVA---------------------------ELKGHTSRVLSLTMSPDGATVASAAADE 386

Query: 227 QVKLWRMNE 235
            ++LWR  E
Sbjct: 387 TLRLWRCFE 395


>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
           Structure Of A C. Elegans Homologue Of Yeast Actin
           Interacting Protein 1 (Aip1).
 pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
           Caenorhabditis Elegans
          Length = 611

 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 54  VRGVHFHKSQPL-FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS 112
           +  V F  S+P   +SG DD  + ++     +   T   H  ++ +V+++ +     S  
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209

Query: 113 DDQTIRIWNWQSRTCISVL-------TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165
            D TI ++N    T   V          H+  V   ++ P    + SAS D+T+++W++ 
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269

Query: 166 ALRKKTVSPADDILRLSQM 184
            L+ +   P    +   Q+
Sbjct: 270 TLKVEKTIPVGTRIEDQQL 288



 Score = 34.7 bits (78), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA---LRKKTV----SPAD 176
           S T   + T H+H    A   P      S  +   VR+WD      + K T+     P  
Sbjct: 48  SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 107

Query: 177 DILRLSQM--------NTDLFGGV----DAVVKYVLEGHDRGVNWAAFHPTLPL-IVSGA 223
           DI   S+           + FG V           L G  R +N   F P+ P  I+SG+
Sbjct: 108 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167

Query: 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283
           DD  V ++     K     T   H   V  V ++    +  S   D +I +++    T  
Sbjct: 168 DDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225

Query: 284 QTFRRE 289
             F  +
Sbjct: 226 GVFEDD 231



 Score = 30.0 bits (66), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH-MNNVSCVMFHAKQD 261
           H   V   ++ P    + +G+ D  V +W MN+     +     H M++V+ V++   + 
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNET 593

Query: 262 IIVSNSEDKSIRVWDV 277
            IVS  +D +I+ W+V
Sbjct: 594 TIVSAGQDSNIKFWNV 609


>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
           Degron Recognition By ApcC
          Length = 318

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 44  IDRFDEHDGPVRGVHF--HKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100
           +  F +H G V+ V +   +S  L   GG  D  I++WN     CL  +  H   + ++ 
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL 247

Query: 101 FHHEYPWIVSA---SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157
           +   Y  ++S    + +Q + IW + +   ++ L GH   V+  +  P    V SA+ D+
Sbjct: 248 WSPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 306

Query: 158 TVRVW 162
           T+R+W
Sbjct: 307 TLRLW 311



 Score = 34.3 bits (77), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 88/249 (35%), Gaps = 50/249 (20%)

Query: 2   LTKFETKSNRVKGLSFHSKRPWILAS-LHSGVIQLWDYRMGTL-IDRFDEHDGPVRGVHF 59
           L    + S RV  LS++S   +IL+S   SG I   D R+    +     H   V G+ +
Sbjct: 102 LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158

Query: 60  HKSQPLFVSGGDDYKIKVWNYKMHRC----LFTLLGHLDYIRTVQFHHEYPW------IV 109
                   SGG+D  + VW           L T   H   ++ V +    PW        
Sbjct: 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW---CPWQSNVLATG 215

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCA---SFHPKEDLVVSASLDQTVRVWDIGA 166
             + D+ IRIWN  S  C+S +  H+   +C+   S H KE +         + +W    
Sbjct: 216 GGTSDRHIRIWNVCSGACLSAVDAHSQ--VCSILWSPHYKELISGHGFAQNQLVIWKYPT 273

Query: 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226
           + K                              L+GH   V      P    + S A D 
Sbjct: 274 MAKVA---------------------------ELKGHTSRVLSLTMSPDGATVASAAADE 306

Query: 227 QVKLWRMNE 235
            ++LWR  E
Sbjct: 307 TLRLWRCFE 315


>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
           Reg Particle Of The Proteasome
          Length = 417

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 27/164 (16%)

Query: 66  FVSGGDDYKIKVW--NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
           F+ G  +  IKV   N+ + R +     H+  I  ++F      ++S+S D  ++IW+ +
Sbjct: 109 FILGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166

Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA-----LRKKTVSPADDI 178
             +    L GH   V   +   +   V+SASLD T+R+W+ G         +  +P D +
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 226

Query: 179 ---------------LRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
                          +  S+ N   FG      KYV+ GH  GV
Sbjct: 227 NSIALFVGTDRQLHEISTSKKNNLEFG---TYGKYVIAGHVSGV 267



 Score = 40.4 bits (93), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260
           + H   +    F P+   ++S + D Q+K+W + +       TL GH   V+ +    + 
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--GSNPRTLIGHRATVTDIAIIDRG 190

Query: 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
             ++S S D +IR+W+    T + TF R+ +
Sbjct: 191 RNVLSASLDGTIRLWECGTGTTIHTFNRKEN 221



 Score = 38.1 bits (87), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 21  RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
           R +IL +   G I++ D       +    H   +  + F  S    +S   D ++K+W+ 
Sbjct: 107 RRFILGTTE-GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165

Query: 81  KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128
           K      TL+GH   +  +        ++SAS D TIR+W   + T I
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213



 Score = 29.6 bits (65), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 19/127 (14%)

Query: 24  ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83
           +L++   G I+LW+   GT I  F+  + P  GV+   S  LFV G D    ++   K +
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN---SIALFV-GTDRQLHEISTSKKN 248

Query: 84  RCLF------TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHNH 136
              F       + GH+  + TV  H+ +      S +QTI++ +  + +C S+ + G+N 
Sbjct: 249 NLEFGTYGKYVIAGHVSGVITV--HNVF------SKEQTIQLPSKFTCSCNSLTVDGNNA 300

Query: 137 YVMCASF 143
             + A +
Sbjct: 301 NYIYAGY 307


>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
 pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
          Length = 420

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 27/164 (16%)

Query: 66  FVSGGDDYKIKVW--NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
           F+ G  +  IKV   N+ + R +     H+  I  ++F      ++S+S D  ++IW+ +
Sbjct: 112 FILGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169

Query: 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA-----LRKKTVSPADDI 178
             +    L GH   V   +   +   V+SASLD T+R+W+ G         +  +P D +
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229

Query: 179 ---------------LRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207
                          +  S+ N   FG      KYV+ GH  GV
Sbjct: 230 NSIALFVGTDRQLHEISTSKKNNLEFG---TYGKYVIAGHVSGV 270



 Score = 40.4 bits (93), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260
           + H   +    F P+   ++S + D Q+K+W + +       TL GH   V+ +    + 
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--GSNPRTLIGHRATVTDIAIIDRG 193

Query: 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
             ++S S D +IR+W+    T + TF R+ +
Sbjct: 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKEN 224



 Score = 38.1 bits (87), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 21  RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
           R +IL +   G I++ D       +    H   +  + F  S    +S   D ++K+W+ 
Sbjct: 110 RRFILGTTE-GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168

Query: 81  KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128
           K      TL+GH   +  +        ++SAS D TIR+W   + T I
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216


>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
           Eed-Ezh2 Polycomb Complex
 pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
 pdb|3JZH|A Chain A, Eed-H3k79me3
          Length = 402

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 38/204 (18%)

Query: 48  DEHDGPVRGVHFH----KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHH 103
           ++H+ P+ GV F+    +  PL  +     ++ ++       +  L  ++D      F+ 
Sbjct: 51  EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYT 110

Query: 104 ---------EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSA 153
                     +P +  A     IRI N  +  CI    GH + +    FHP++ +L++S 
Sbjct: 111 CAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV 170

Query: 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213
           S D  +R+W+I            D L        +FGGV        EGH   V  A + 
Sbjct: 171 SKDHALRLWNIQT----------DTL------VAIFGGV--------EGHRDEVLSADYD 206

Query: 214 PTLPLIVSGADDRQVKLWRMNETK 237
                I+S   D  +KLWR+N  +
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKR 230



 Score = 36.2 bits (82), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
           GH   +N   FHP  P L++S + D  ++LW +      + DTL        GH + V  
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 202

Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
             +    + I+S   D S+++W +  +  +   +  +D
Sbjct: 203 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 240



 Score = 35.0 bits (79), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)

Query: 10  NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
           N +  L FH + P +L S+     ++LW+ +  TL+  F   + H   V    +      
Sbjct: 152 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 211

Query: 66  FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
            +S G D+ +K+W     R +  +    DY          P+I      Q I   ++ +R
Sbjct: 212 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 263

Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
                   H +YV C  +    DL++S S +  +  W  G +         D ++ S+ N
Sbjct: 264 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 310

Query: 186 TDLFGGVD 193
             + G  D
Sbjct: 311 VTILGRFD 318


>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
 pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
 pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
          Length = 366

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 25/134 (18%)

Query: 105 YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWD 163
           +P +  A     IRI N  +  CI    GH + +    FHP++ +L++S S D  +R+W+
Sbjct: 85  HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144

Query: 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223
           I            D L        +FGGV        EGH   V  A +      I+S  
Sbjct: 145 IQT----------DTL------VAIFGGV--------EGHRDEVLSADYDLLGEKIMSCG 180

Query: 224 DDRQVKLWRMNETK 237
            D  +KLWR+N  +
Sbjct: 181 MDHSLKLWRINSKR 194



 Score = 36.2 bits (82), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
           GH   +N   FHP  P L++S + D  ++LW +      + DTL        GH + V  
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 166

Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
             +    + I+S   D S+++W +  +  +   +  +D
Sbjct: 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204



 Score = 33.9 bits (76), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)

Query: 10  NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
           N +  L FH + P +L S+     ++LW+ +  TL+  F   + H   V    +      
Sbjct: 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175

Query: 66  FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
            +S G D+ +K+W     R +  +    DY          P+I      Q I   ++ +R
Sbjct: 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 227

Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
                   H +YV C  +    DL++S S +  +  W  G +         D ++ S+ N
Sbjct: 228 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 274

Query: 186 TDLFGGVD 193
             + G  D
Sbjct: 275 VTILGRFD 282


>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H3k27 Peptide
          Length = 365

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 25/134 (18%)

Query: 105 YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWD 163
           +P +  A     IRI N  +  CI    GH + +    FHP++ +L++S S D  +R+W+
Sbjct: 84  HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 143

Query: 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223
           I            D L        +FGGV        EGH   V  A +      I+S  
Sbjct: 144 IQT----------DTL------VAIFGGV--------EGHRDEVLSADYDLLGEKIMSCG 179

Query: 224 DDRQVKLWRMNETK 237
            D  +KLWR+N  +
Sbjct: 180 MDHSLKLWRINSKR 193



 Score = 36.2 bits (82), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
           GH   +N   FHP  P L++S + D  ++LW +      + DTL        GH + V  
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 165

Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
             +    + I+S   D S+++W +  +  +   +  +D
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203



 Score = 33.9 bits (76), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)

Query: 10  NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
           N +  L FH + P +L S+     ++LW+ +  TL+  F   + H   V    +      
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174

Query: 66  FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
            +S G D+ +K+W     R +  +    DY          P+I      Q I   ++ +R
Sbjct: 175 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 226

Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
                   H +YV C  +    DL++S S +  +  W  G +         D ++ S+ N
Sbjct: 227 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 273

Query: 186 TDLFGGVD 193
             + G  D
Sbjct: 274 VTILGRFD 281


>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
          Length = 361

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 25/134 (18%)

Query: 105 YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWD 163
           +P +  A     IRI N  +  CI    GH + +    FHP++ +L++S S D  +R+W+
Sbjct: 80  HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 139

Query: 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223
           I            D L        +FGGV        EGH   V  A +      I+S  
Sbjct: 140 IQT----------DTL------VAIFGGV--------EGHRDEVLSADYDLLGEKIMSCG 175

Query: 224 DDRQVKLWRMNETK 237
            D  +KLWR+N  +
Sbjct: 176 MDHSLKLWRINSKR 189



 Score = 36.2 bits (82), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
           GH   +N   FHP  P L++S + D  ++LW +      + DTL        GH + V  
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 161

Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
             +    + I+S   D S+++W +  +  +   +  +D
Sbjct: 162 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 199



 Score = 33.9 bits (76), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)

Query: 10  NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
           N +  L FH + P +L S+     ++LW+ +  TL+  F   + H   V    +      
Sbjct: 111 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 170

Query: 66  FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
            +S G D+ +K+W     R +  +    DY          P+I      Q I   ++ +R
Sbjct: 171 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 222

Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
                   H +YV C  +    DL++S S +  +  W  G +         D ++ S+ N
Sbjct: 223 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 269

Query: 186 TDLFGGVD 193
             + G  D
Sbjct: 270 VTILGRFD 277


>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H1k26 Peptide
 pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H3k9 Peptide
 pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
           Histone H4k20 Peptide
 pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
          Length = 365

 Score = 43.9 bits (102), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 25/134 (18%)

Query: 105 YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWD 163
           +P +  A     IRI N  +  CI    GH + +    FHP++ +L++S S D  +R+W+
Sbjct: 84  HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 143

Query: 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223
           I            D L        +FGGV        EGH   V  A +      I+S  
Sbjct: 144 IQT----------DTL------VAIFGGV--------EGHRDEVLSADYDLLGEKIMSCG 179

Query: 224 DDRQVKLWRMNETK 237
            D  +KLWR+N  +
Sbjct: 180 MDHSLKLWRINSKR 193



 Score = 36.2 bits (82), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 202 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTL-------RGHMNNVSC 253
           GH   +N   FHP  P L++S + D  ++LW +      + DTL        GH + V  
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------QTDTLVAIFGGVEGHRDEVLS 165

Query: 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
             +    + I+S   D S+++W +  +  +   +  +D
Sbjct: 166 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203



 Score = 33.5 bits (75), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 25/188 (13%)

Query: 10  NRVKGLSFHSKRPWILASLHSG-VIQLWDYRMGTLIDRF---DEHDGPVRGVHFHKSQPL 65
           N +  L FH + P +L S+     ++LW+ +  TL+  F   + H   V    +      
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174

Query: 66  FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125
            +S G D+ +K+W     R +  +    DY          P+I      Q I   ++ +R
Sbjct: 175 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT---NRPFI-----SQKIHFPDFSTR 226

Query: 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185
                   H +YV C  +    DL++S S +  +  W  G +         D ++ S+ N
Sbjct: 227 DI------HRNYVDCVRW--LGDLILSKSCENAIVCWKPGKMEDDI-----DKIKPSESN 273

Query: 186 TDLFGGVD 193
             + G  D
Sbjct: 274 VTILGRFD 281


>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
          Length = 402

 Score = 41.2 bits (95), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 26/168 (15%)

Query: 128 ISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDI--GALRKKTVSPADDILRLSQM 184
           + ++ GH   V+  ++ P  D ++ S S D TV VW+I  G L      P          
Sbjct: 74  VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV--------- 124

Query: 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDT 243
                          LEGH + V   A+HPT   +++S   D  + +W +    A     
Sbjct: 125 -------------ITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLG 171

Query: 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
              H + +  V +     +I ++  DK +RV +  K T V    R H+
Sbjct: 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219



 Score = 37.7 bits (86), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 108 IVSASDDQTIRIWNWQS-------RTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQTV 159
           I S S+D T+ +W           R  +  L GH   V   ++HP  +++++SA  D  +
Sbjct: 97  IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156

Query: 160 RVWDIG 165
            VWD+G
Sbjct: 157 LVWDVG 162



 Score = 34.3 bits (77), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 23/113 (20%)

Query: 216 LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRV 274
           LPL  +G  D+ V L             + GH   V  + +    D +I S SED ++ V
Sbjct: 62  LPLGKTGRVDKNVPL-------------VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMV 108

Query: 275 WDVTK-------RTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMIVFKL 318
           W++         R  V T      R  I+A HP     LL+AG D+ ++V+ +
Sbjct: 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161


>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
          Length = 402

 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 26/168 (15%)

Query: 128 ISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDI--GALRKKTVSPADDILRLSQM 184
           + ++ GH   V+  ++ P  D ++ S S D TV VW+I  G L      P          
Sbjct: 74  VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV--------- 124

Query: 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDT 243
                          LEGH + V   A+HPT   +++S   D  + +W +    A     
Sbjct: 125 -------------ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171

Query: 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
              H + +  V +     +I ++  DK +RV +  K T V    R H+
Sbjct: 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219



 Score = 37.7 bits (86), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 108 IVSASDDQTIRIWNWQS-------RTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQTV 159
           I S S+D T+ +W           R  +  L GH   V   ++HP  +++++SA  D  +
Sbjct: 97  IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156

Query: 160 RVWDIG 165
            VWD+G
Sbjct: 157 LVWDVG 162



 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 23/113 (20%)

Query: 216 LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRV 274
           LPL  +G  D+ V L             + GH   V  + +    D +I S SED ++ V
Sbjct: 62  LPLGKTGRVDKNVPL-------------VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108

Query: 275 WDVTK-------RTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMIVFKL 318
           W++         R  V T      R  I+A HP     LL+AG D+ ++V+ +
Sbjct: 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161


>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
          Length = 344

 Score = 40.4 bits (93), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 24  ILASLHSGVIQLW--DYRMGTLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79
           IL +  SG ++LW  D     ++ +F   EHD  V  V    S    VSG  D  IKVW+
Sbjct: 96  ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155

Query: 80  YKMHRCLFTLLGHLDYIRTVQFH-HEYPWIVSASDDQTIRIWN 121
                 L +   H   +  V    H+    +S S+D  I +W+
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198



 Score = 39.3 bits (90), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 219 IVSGADDRQVKLWRMNETKAWEVDTL--RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
           I+  +D   V+LW ++E +   V       H + VS V   +     VS S+D  I+VWD
Sbjct: 96  ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155

Query: 277 VTKRTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334
           + ++  + ++R    +   +A+ P  +   L+   D+ ++++     +PA  +   +  Y
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215



 Score = 38.1 bits (87), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 69  GGDDYKIKVWNYKMHRCL----FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124
             D   +++W    +  L    F    H D + TV         VS S D  I++W+   
Sbjct: 99  ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158

Query: 125 RTCISVLTGHNHYVMCASFHPKEDLV-VSASLDQTVRVWD 163
           +  +S    H   V C +  P +D V +S S D  + +WD
Sbjct: 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198


>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
 pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
           From Xenopus Laevis
          Length = 357

 Score = 38.9 bits (89), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 24  ILASLHSGVIQLWDY--RMGTLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79
           IL +  SG ++LW+   +   L+++F   EHD  V+ +         VSGG D+ +KVW+
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167

Query: 80  YKMHRCLFTLLGHLDYIRTV 99
                 L +   H   +  V
Sbjct: 168 LSQKAVLKSYNAHSSEVNCV 187



 Score = 33.9 bits (76), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 87  FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146
           F    H D ++T+    +    VS   D ++++W+   +  +     H+  V C +  P 
Sbjct: 133 FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192

Query: 147 EDLV-VSASLDQTVRVWD 163
           +D + +S   D  + +WD
Sbjct: 193 KDTIFLSCGEDGRILLWD 210



 Score = 33.5 bits (75), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVT 278
           VSG  D  VK+W +++     + +   H + V+CV     +D I +S  ED  I +WD  
Sbjct: 155 VSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212

Query: 279 K 279
           K
Sbjct: 213 K 213


>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
          Length = 753

 Score = 38.1 bits (87), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 49  EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
           E DG   G    K    FV+GG D  +K+W Y      +    TL GH D++R V +   
Sbjct: 159 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215

Query: 105 Y---PWIVSASDDQTIRIW 120
                ++ S S D+T  IW
Sbjct: 216 VLLRSYLASVSQDRTCIIW 234



 Score = 35.0 bits (79), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 55/262 (20%)

Query: 108 IVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD 163
           + + S D+TI+I+  +  T   I  LTGH   V    + HPK   ++ S S D  V +W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83

Query: 164 ----------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------V 199
                     + A+   +V     +P +    L   ++D   G  +VV++         +
Sbjct: 84  EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKENGTTSPII 140

Query: 200 LEGHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTL 244
           ++ H  GVN A++ P                  V+G  D  VK+W+ N      V   TL
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200

Query: 245 RGHMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREH---DRFWIL 296
            GH + V  V +      +  + S S+D++  +W      G   +T  +E    D  W  
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260

Query: 297 ASHPEMNLLA-AGHDSGMIVFK 317
           +     N+LA +G D+ + ++K
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWK 282


>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
          Length = 379

 Score = 38.1 bits (87), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 49  EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
           E DG   G    K    FV+GG D  +K+W Y      +    TL GH D++R V +   
Sbjct: 161 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 217

Query: 105 Y---PWIVSASDDQTIRIW 120
                ++ S S D+T  IW
Sbjct: 218 VLLRSYLASVSQDRTCIIW 236



 Score = 33.5 bits (75), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 55/262 (20%)

Query: 108 IVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD 163
           + + S D+TI+I+  +  T   I  LTGH   V    + HPK   ++ S S D  V +W 
Sbjct: 26  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85

Query: 164 ----------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------V 199
                     + A+   +V     +P +    L   ++D   G  +VV++         +
Sbjct: 86  EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKENGTTSPII 142

Query: 200 LEGHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTL 244
           ++ H  GVN A++ P                  V+G  D  VK+W+ N      V   TL
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202

Query: 245 RGHMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREH---DRFWIL 296
            GH + V  V +      +  + S S+D++  +W      G   +T  +E    D  W  
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 262

Query: 297 ASHPEMNLLA-AGHDSGMIVFK 317
           +     N+LA +G D+ + ++K
Sbjct: 263 SWSLSGNVLALSGGDNKVTLWK 284


>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
           Copii Vesicular Coat, Native Version
 pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
           Copii Vesicular Coat, Native Version
 pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
           Sec13-Nup145c-Nup84 Nucleoporin Complex
 pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
           Sec13-Nup145c-Nup84 Nucleoporin Complex
 pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
           Sec13-Nup145c-Nup84 Nucleoporin Complex
 pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
 pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
 pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
 pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
 pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
 pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
          Length = 297

 Score = 37.0 bits (84), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 49  EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
           E DG   G    K    FV+GG D  +K+W Y      +    TL GH D++R V +   
Sbjct: 159 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215

Query: 105 Y---PWIVSASDDQTIRIW 120
                ++ S S D+T  IW
Sbjct: 216 VLLRSYLASVSQDRTCIIW 234



 Score = 32.0 bits (71), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 55/262 (20%)

Query: 108 IVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD 163
           + + S D+TI+I+  +  T   I  LTGH   V    + HPK   ++ S S D  V +W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83

Query: 164 ----------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------V 199
                     + A+   +V     +P +    L   ++D   G  +VV++         +
Sbjct: 84  EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD---GKVSVVEFKENGTTSPII 140

Query: 200 LEGHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTL 244
           ++ H  GVN A++ P                  V+G  D  VK+W+ N      V   TL
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200

Query: 245 RGHMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREH---DRFWIL 296
            GH + V  V +      +  + S S+D++  +W      G   +T  +E    D  W  
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260

Query: 297 ASHPEMNLLA-AGHDSGMIVFK 317
           +     N+LA +G D+ + ++K
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWK 282


>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
           Copii Vesicular Coat
          Length = 297

 Score = 37.0 bits (84), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 49  EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
           E DG   G    K    FV+GG D  +K+W Y      +    TL GH D++R V +   
Sbjct: 159 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215

Query: 105 Y---PWIVSASDDQTIRIW 120
                ++ S S D+T  IW
Sbjct: 216 VLLRSYMASVSQDRTCIIW 234



 Score = 32.0 bits (71), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 55/262 (20%)

Query: 108 IVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD 163
           + + S D+TI+I+  +  T   I  LTGH   V    + HPK   ++ S S D  V +W 
Sbjct: 24  MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83

Query: 164 ----------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------V 199
                     + A+   +V     +P +    L   ++D   G  +VV++         +
Sbjct: 84  EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD---GKVSVVEFKENGTTSPII 140

Query: 200 LEGHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTL 244
           ++ H  GVN A++ P                  V+G  D  VK+W+ N      V   TL
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200

Query: 245 RGHMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREH---DRFWIL 296
            GH + V  V +      +  + S S+D++  +W      G   +T  +E    D  W  
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260

Query: 297 ASHPEMNLLA-AGHDSGMIVFK 317
           +     N+LA +G D+ + ++K
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWK 282


>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
           Copii Vesicular Coat, Selenomethionine Version
 pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
           Copii Vesicular Coat, Selenomethionine Version
          Length = 297

 Score = 37.0 bits (84), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 49  EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----TLLGHLDYIRTVQFHHE 104
           E DG   G    K    FV+GG D  +K+W Y      +    TL GH D++R V +   
Sbjct: 159 EEDGEHNGT---KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT 215

Query: 105 Y---PWIVSASDDQTIRIW 120
                +  S S D+T  IW
Sbjct: 216 VLLRSYXASVSQDRTCIIW 234



 Score = 35.8 bits (81), Expect = 0.16,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 55/260 (21%)

Query: 110 SASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASF-HPK-EDLVVSASLDQTVRVWD-- 163
           + S D+TI+I+  +  T   I  LTGH   V    + HPK   ++ S S D  V +W   
Sbjct: 26  TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEE 85

Query: 164 --------IGALRKKTV-----SPADDILRLSQMNTDLFGGVDAVVKY---------VLE 201
                   + A+   +V     +P +    L   ++D   G  +VV++         +++
Sbjct: 86  NGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD---GKVSVVEFKENGTTSPIIID 142

Query: 202 GHDRGVNWAAFHPTL-------------PLIVSGADDRQVKLWRMNETKAWEV--DTLRG 246
            H  GVN A++ P                  V+G  D  VK+W+ N      V   TL G
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202

Query: 247 HMNNVSCVMFHAK---QDIIVSNSEDKSIRVWDVTKRTG--VQTFRREH---DRFWILAS 298
           H + V  V +      +    S S+D++  +W      G   +T  +E    D  W  + 
Sbjct: 203 HSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262

Query: 299 HPEMNLLA-AGHDSGMIVFK 317
               N+LA +G D+ + ++K
Sbjct: 263 SLSGNVLALSGGDNKVTLWK 282


>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
           Eif3i Complex With Eif3b C-Terminus (655-700)
 pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
           Eif3i Complex With Eif3b C-Terminus (655-700)
          Length = 369

 Score = 36.6 bits (83), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW-RMNETKAWEVDTLRGHMNNVSCVMFHA 258
           L GH+R +    ++    L+ S + D    +W  +N  +   + TL GH   +  +    
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---LGTLDGHTGTIWSIDVDC 84

Query: 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287
                V+ S D SI++WDV+    V T++
Sbjct: 85  FTKYCVTGSADYSIKLWDVSNGQCVATWK 113



 Score = 36.2 bits (82), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 93/242 (38%), Gaps = 37/242 (15%)

Query: 50  HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109
           H+ P+  V ++K   L  S   D    VW       L TL GH   I ++       + V
Sbjct: 31  HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV 90

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ------TVRVWD 163
           + S D +I++W+  +  C++        V    F P  +  + A LD       ++ +++
Sbjct: 91  TGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYFL-AILDNVMKNPGSINIYE 148

Query: 164 IG------ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP 217
           I        L K +  P   I+    ++     G     KY++ GH  G           
Sbjct: 149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG----------- 197

Query: 218 LIVSGADDRQVKLWRMNETKAWE-VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276
                      K+ + + +  +E VD++  H  ++S + F       +++S D +  + D
Sbjct: 198 -----------KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246

Query: 277 VT 278
           V+
Sbjct: 247 VS 248



 Score = 32.7 bits (73), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 34/82 (41%)

Query: 83  HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142
           H     L GH   +  V+++ E   + S S D +  +W   +   +  L GH   +    
Sbjct: 22  HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID 81

Query: 143 FHPKEDLVVSASLDQTVRVWDI 164
                   V+ S D ++++WD+
Sbjct: 82  VDCFTKYCVTGSADYSIKLWDV 103


>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
 pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
 pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
          Length = 401

 Score = 34.7 bits (78), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 21/167 (12%)

Query: 88  TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147
           TL GH   +  + +  +   + S  +D  ++IW+ +S       T HN  V   ++ P +
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271

Query: 148 DLVVS---ASLDQTVRVWDIG-ALRKKTVSPADDILRL-------SQMNTDLFGGVD-AV 195
             +++    ++D+ +  W+     R  TV     +  L         M+T  F   + ++
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331

Query: 196 VKYVLEG---------HDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233
             Y   G         HD  V ++A  P   ++ + A D  +K WR+
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378



 Score = 30.8 bits (68), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 38/201 (18%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 95  YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154
           Y+ +V++ H+  ++     +  + I++ +S+T +  + GH   V C S++    ++ S S
Sbjct: 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGS 193

Query: 155 LDQTVRVWD-------IGALRKKT-----VSPADDILRLSQMNTD----LFGGVDAVVKY 198
               +   D       IG L+  +     ++   D L+L+    D    ++    ++ K+
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF 253

Query: 199 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255
               H+   + V W  +   L     G  D+Q+  W  N      V+T+       S + 
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW--NAATGARVNTVDAGSQVTSLIW 311

Query: 256 F-HAKQDIIVSNSEDKSIRVW 275
             H+K+ +      D ++ +W
Sbjct: 312 SPHSKEIMSTHGFPDNNLSIW 332


>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
           Crystal Form
          Length = 615

 Score = 34.3 bits (77), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 16/146 (10%)

Query: 33  IQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---QPLFVSGGDDYKIKVWNYKMHRCL--F 87
           I  +D + G  +   ++   PV+G  F  S      F + G D  I+VW+    +C+  +
Sbjct: 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 290

Query: 88  TL----LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASF 143
           TL    LG+         +     I+S S D T+  +       +  ++GHN  +   + 
Sbjct: 291 TLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347

Query: 144 HPKEDLVVSASLDQTVRVWDIGALRK 169
           +P    ++S S D  +  W   ++ +
Sbjct: 348 NP----LISGSYDGRIMEWSSSSMHQ 369


>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
           Monoclinic Crystal Form
 pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
           Monoclinic Crystal Form
          Length = 615

 Score = 33.9 bits (76), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 16/139 (11%)

Query: 33  IQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---QPLFVSGGDDYKIKVWNYKMHRCL--F 87
           I  +D + G  +   ++   PV+G  F  S      F + G D  I+VW+    +C+  +
Sbjct: 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 290

Query: 88  TL----LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASF 143
           TL    LG+         +     I+S S D T+  +       +  ++GHN  +   + 
Sbjct: 291 TLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347

Query: 144 HPKEDLVVSASLDQTVRVW 162
           +P    ++S S D  +  W
Sbjct: 348 NP----LISGSYDGRIXEW 362


>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
          Length = 408

 Score = 33.1 bits (74), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 29/160 (18%)

Query: 134 HNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192
           H + V    ++P +  +  S+S D+T++VWD   L+                  D+F   
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ----------------TADVFNFE 141

Query: 193 DAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVS 252
           + V  + +         +       L+  G    +V+L  +       +  L+GH   + 
Sbjct: 142 ETVYSHHM---------SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEIL 190

Query: 253 CVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291
            V +  + D I+ + S D  +++WDV + +G      +H+
Sbjct: 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230



 Score = 32.0 bits (71), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 30/200 (15%)

Query: 11  RVKGLSFHSKRPWILASLHSGV-IQLWDYR--MGTLI--DRFD------------EHDGP 53
            +  +S+  +  +ILA+  +   ++LWD R   G LI  D+ +             H+G 
Sbjct: 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247

Query: 54  VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH--------LDYIRTVQFHHEY 105
           V G+ F       ++ G D ++++WN           G         L +  +     E+
Sbjct: 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF 307

Query: 106 PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165
            ++   S   TI ++   S   I++L GH   V C  F      + S S D  +  W + 
Sbjct: 308 VFVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW-VP 363

Query: 166 ALRKKTVSPADDILRLSQMN 185
           +L +  V   D+    SQ+N
Sbjct: 364 SLYEP-VPDDDETTTKSQLN 382


>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
           Copii Vesicular Coat
          Length = 416

 Score = 33.1 bits (74), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 71  DDYKIKVWNYKMHRCLFTLL--GHLDYIRTVQF-HHEYPWIVSASDDQTIRIWNWQSRTC 127
           +D  I +W+ +        L  GH   I ++ + H +   ++S+  D T+ +WN +S   
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297

Query: 128 ISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNT 186
           +S      ++     F P+  DL   AS D  + V  +  L   T+   +   +  +  T
Sbjct: 298 LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT-NTLDEQETETKQQESET 356

Query: 187 DLFGGV 192
           D +  V
Sbjct: 357 DFWNNV 362



 Score = 32.0 bits (71), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 6/68 (8%)

Query: 219 IVSGA-DDRQVKLWRMNETKAWEVDTL---RGHMNNVSCVMFHAKQD-IIVSNSEDKSIR 273
           I++GA D+  ++L+  NE     ++++     H ++V  V F+AKQD ++ S   +  I 
Sbjct: 81  IIAGALDNGSLELYSTNEANN-AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139

Query: 274 VWDVTKRT 281
           +WD+ K T
Sbjct: 140 IWDMNKCT 147


>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
 pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
 pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
 pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
          Length = 337

 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169
           S   D  I +W+  ++T +    GH     C         + +  LD TVR WD+   R+
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217


>pdb|3U7W|L Chain L, Crystal Structure Of Nih45-46 Fab
 pdb|3U7Y|L Chain L, Structure Of Nih45-46 Fab In Complex With Gp120 Of 93th057
           Hiv
          Length = 210

 Score = 32.7 bits (73), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELY 394
           L QSP TLS SP E A++ C     GS   Y
Sbjct: 4   LTQSPATLSLSPGETAIISCRTSQSGSLAWY 34


>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
 pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
          Length = 399

 Score = 32.0 bits (71), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 31  GVIQLWDYRMGTL-IDRFDEHDGPVRGVHFHKSQP--LFVSGGD 71
           G++ +WD R GT+ +     H+  +  VHFH S P  LF    D
Sbjct: 259 GMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSED 302


>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
           Repeat Domain
          Length = 437

 Score = 32.0 bits (71), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 31  GVIQLWDYRMGTLID--RFDEHDGPVRGVH----FHKSQPLFVSGGDDYKIKVWNYKMHR 84
           G+I +WD R   LI    F +H  P+  V     + K+  + V G     + +WN+    
Sbjct: 236 GIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294

Query: 85  CLFTLL 90
           C +  +
Sbjct: 295 CQYAFI 300


>pdb|1IT9|L Chain L, Crystal Structure Of An Antigen-Binding Fragment From A
           Humanized Version Of The Anti-Human Fas Antibody Hfe7a
          Length = 214

 Score = 31.6 bits (70), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 364 LNQSPRTLSYSPTENAVLICS-----DVDGGSY 391
           L QSP TLS SP E A L C      D DG SY
Sbjct: 4   LTQSPGTLSLSPGERATLSCKASQSVDYDGDSY 36


>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
            Porcine (spp-40) At 2.89a Resolution
 pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling Protein
            From Porcine (Spp-40) At 2.1a Resolution.
 pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein Liganded
            With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A Resolution
 pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
            Porcine Mammary Gland (Spp-40): Crystal Structure Of The
            Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
            Resolution
          Length = 361

 Score = 31.6 bits (70), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 1142 LNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASG 1199
            L YDF   +      H P++RGQ+D S  +    +  S   +L +  +  V+G+   G
Sbjct: 183  LTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFG 240


>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
 pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
          Length = 349

 Score = 31.6 bits (70), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 43  LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78
           L+   D+H+G V  V ++ +  +  S GDD K+++W
Sbjct: 296 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331



 Score = 30.4 bits (67), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKAWEV-DTLRGHMNNVSCVMFHAK 259
           GHD  V+   +      + + + D+ +K+++++ +T  WE+ D+ R H +++  + + + 
Sbjct: 7   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66

Query: 260 Q--DIIVSNSEDKSIRVWD 276
           +   II S S DK++++W+
Sbjct: 67  EYGRIIASASYDKTVKLWE 85


>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
 pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
 pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
 pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
          Length = 351

 Score = 31.6 bits (70), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 43  LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78
           L+   D+H+G V  V ++ +  +  S GDD K+++W
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333



 Score = 30.4 bits (67), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKAWEV-DTLRGHMNNVSCVMFHAK 259
           GHD  V+   +      + + + D+ +K+++++ +T  WE+ D+ R H +++  + + + 
Sbjct: 9   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68

Query: 260 Q--DIIVSNSEDKSIRVWD 276
           +   II S S DK++++W+
Sbjct: 69  EYGRIIASASYDKTVKLWE 87


>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
          Length = 351

 Score = 31.2 bits (69), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 43  LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78
           L+   D+H+G V  V ++ +  +  S GDD K+++W
Sbjct: 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333



 Score = 30.4 bits (67), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKAWEV-DTLRGHMNNVSCVMFHAK 259
           GHD  V+   +      + + + D+ +K+++++ +T  WE+ D+ R H +++  + + + 
Sbjct: 9   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68

Query: 260 Q--DIIVSNSEDKSIRVWD 276
           +   II S S DK++++W+
Sbjct: 69  EYGRIIASASYDKTVKLWE 87


>pdb|3NGB|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
           Antibody Vrc01 In Complex With Hiv-1 Gp120
 pdb|3NGB|C Chain C, Crystal Structure Of Broadly And Potently Neutralizing
           Antibody Vrc01 In Complex With Hiv-1 Gp120
 pdb|3NGB|F Chain F, Crystal Structure Of Broadly And Potently Neutralizing
           Antibody Vrc01 In Complex With Hiv-1 Gp120
 pdb|3NGB|K Chain K, Crystal Structure Of Broadly And Potently Neutralizing
           Antibody Vrc01 In Complex With Hiv-1 Gp120
          Length = 210

 Score = 31.2 bits (69), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELY 394
           L QSP TLS SP E A++ C     GS   Y
Sbjct: 4   LTQSPGTLSLSPGETAIISCRTSQYGSLAWY 34


>pdb|3SE8|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
           Antibody Vrc03 In Complex With Hiv-1 Gp120
          Length = 209

 Score = 30.8 bits (68), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 11/74 (14%)

Query: 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYV------IPK----DSIGRGDSVQDAKKG 413
           L QSP  LS SP E A L C    GG+   +       +P+    D+  R   V D   G
Sbjct: 4   LTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVG 63

Query: 414 LG-GSAIFIARNRF 426
            G G+  F+  N+ 
Sbjct: 64  SGSGTDFFLTINKL 77


>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
 pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
 pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
          Length = 436

 Score = 30.8 bits (68), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 76  KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNW-QSRTCISVLTG 133
           ++WN +MH+           +  V  +    W + +AS DQT++IW+  Q R   S L  
Sbjct: 243 ELWNLRMHK---------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 293

Query: 134 --HNHYVMCASFHPKEDLVVSASLDQTVRVW 162
             H H V  A F P    +++      +RV+
Sbjct: 294 LPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324


>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
           Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
 pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
           (Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
 pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
 pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
 pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
 pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
 pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
 pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
          Length = 382

 Score = 30.8 bits (68), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 27/84 (32%)

Query: 134 HNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192
           H   V  A F+P+ D L+ ++S+D TV++WD+  ++ K                      
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--------------------- 240

Query: 193 DAVVKYVLE-GHDRGVNWAAFHPT 215
                Y+ E  H++ VN A F+PT
Sbjct: 241 ----SYIAEMPHEKPVNAAYFNPT 260


>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
           Photoproduct Containing Dna-Duplex
 pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
           Containing Dna-Duplex
 pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
          Length = 383

 Score = 30.4 bits (67), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 27/84 (32%)

Query: 134 HNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192
           H   V  A F+P+ D L+ ++S+D TV++WD+  ++ K                      
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--------------------- 241

Query: 193 DAVVKYVLE-GHDRGVNWAAFHPT 215
                Y+ E  H++ VN A F+PT
Sbjct: 242 ----SYIAEMPHEKPVNAAYFNPT 261


>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
           (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
           Repair
          Length = 436

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 76  KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNW-QSRTCISVLTG 133
           ++WN +MH+           +  V  +    W + +AS DQT++IW+  Q R   S L  
Sbjct: 242 ELWNLRMHK---------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292

Query: 134 --HNHYVMCASFHPKEDLVVSASLDQTVRVW 162
             H H V  A F P    +++      +RV+
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323


>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
 pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
 pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
 pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
          Length = 400

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 705 DKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAER 764
           +   +++ +  +K  V G    A    D KE V ILES GH+ +A     + G+  +A  
Sbjct: 12  EPFQRLVAVTALKKVVPGSILEA---ADGKEAVAILESCGHVDIAICDLQMSGMDGLAFL 68

Query: 765 LAAELGDNVPSV 776
             A L   V SV
Sbjct: 69  RHASLSGKVHSV 80


>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
           (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
           Repair
          Length = 435

 Score = 30.4 bits (67), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 76  KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNW-QSRTCISVLTG 133
           ++WN +MH+           +  V  +    W + +AS DQT++IW+  Q R   S L  
Sbjct: 242 ELWNLRMHK---------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292

Query: 134 --HNHYVMCASFHPKEDLVVSASLDQTVRVW 162
             H H V  A F P    +++      +RV+
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323


>pdb|2GHW|B Chain B, Crystal Structure Of Sars Spike Protein Receptor Binding
           Domain In Complex With A Neutralizing Antibody, 80r
 pdb|2GHW|D Chain D, Crystal Structure Of Sars Spike Protein Receptor Binding
           Domain In Complex With A Neutralizing Antibody, 80r
          Length = 247

 Score = 30.4 bits (67), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 14/22 (63%), Positives = 15/22 (68%)

Query: 362 TSLNQSPRTLSYSPTENAVLIC 383
           T+L QSP TLS SP E A L C
Sbjct: 136 TTLTQSPATLSLSPGERATLSC 157


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,183,196
Number of Sequences: 62578
Number of extensions: 1398443
Number of successful extensions: 4521
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3143
Number of HSP's gapped (non-prelim): 522
length of query: 1208
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1098
effective length of database: 8,089,757
effective search space: 8882553186
effective search space used: 8882553186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)