Query 000961
Match_columns 1208
No_of_seqs 1124 out of 3606
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 11:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0292 Vesicle coat complex C 100.0 6E-251 1E-255 2087.1 102.1 1184 1-1204 1-1202(1202)
2 PF06957 COPI_C: Coatomer (COP 100.0 2E-119 5E-124 1001.5 23.3 346 860-1208 71-422 (422)
3 KOG0276 Vesicle coat complex C 100.0 1.4E-80 3.1E-85 681.7 66.1 705 3-760 7-764 (794)
4 PF04053 Coatomer_WDAD: Coatom 100.0 1.3E-56 2.7E-61 517.3 37.3 402 338-758 2-443 (443)
5 KOG0271 Notchless-like WD40 re 100.0 2.8E-46 6.1E-51 390.4 30.3 329 3-395 109-479 (480)
6 KOG0318 WD40 repeat stress pro 100.0 2.2E-41 4.8E-46 367.5 53.5 479 3-518 53-601 (603)
7 KOG0319 WD40-repeat-containing 100.0 1.7E-41 3.7E-46 382.5 52.7 482 8-523 61-581 (775)
8 KOG0291 WD40-repeat-containing 100.0 4.7E-40 1E-44 370.3 54.0 450 9-524 96-617 (893)
9 KOG0271 Notchless-like WD40 re 100.0 1.1E-42 2.4E-47 363.5 29.9 330 43-440 107-479 (480)
10 KOG0319 WD40-repeat-containing 100.0 3.9E-41 8.4E-46 379.6 40.4 477 3-515 98-614 (775)
11 KOG0306 WD40-repeat-containing 100.0 9.9E-40 2.1E-44 367.5 46.8 477 10-524 66-669 (888)
12 KOG0318 WD40 repeat stress pro 100.0 9.2E-39 2E-43 347.2 50.7 462 3-480 97-602 (603)
13 KOG0292 Vesicle coat complex C 100.0 2.7E-39 5.9E-44 368.3 44.6 655 1-745 43-781 (1202)
14 KOG0291 WD40-repeat-containing 100.0 9.7E-38 2.1E-42 351.7 54.2 422 3-490 139-622 (893)
15 KOG1538 Uncharacterized conser 100.0 2.3E-39 5E-44 357.6 37.6 621 11-773 14-688 (1081)
16 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-40 2.5E-45 353.8 24.0 274 7-309 173-449 (459)
17 KOG0276 Vesicle coat complex C 100.0 3.4E-36 7.4E-41 332.2 52.1 655 45-768 7-746 (794)
18 KOG0286 G-protein beta subunit 100.0 2.8E-37 6.1E-42 313.5 33.8 279 3-309 49-334 (343)
19 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-37 3.9E-42 329.5 24.5 232 49-309 173-407 (459)
20 KOG0306 WD40-repeat-containing 100.0 2E-34 4.4E-39 324.8 42.7 409 2-482 100-666 (888)
21 KOG0279 G protein beta subunit 100.0 7.2E-35 1.6E-39 294.7 32.9 284 2-317 8-311 (315)
22 KOG0279 G protein beta subunit 100.0 2.9E-34 6.2E-39 290.3 33.0 297 42-397 6-313 (315)
23 KOG0286 G-protein beta subunit 100.0 9.7E-34 2.1E-38 287.9 34.1 287 44-395 48-343 (343)
24 KOG0295 WD40 repeat-containing 100.0 5.5E-35 1.2E-39 305.3 24.8 280 2-310 101-396 (406)
25 KOG0273 Beta-transducin family 100.0 1.5E-33 3.2E-38 303.3 33.8 324 6-396 175-522 (524)
26 KOG1524 WD40 repeat-containing 100.0 5.4E-32 1.2E-36 293.9 43.5 631 7-767 12-694 (737)
27 KOG0263 Transcription initiati 100.0 3.7E-34 8E-39 327.8 27.5 248 4-280 373-651 (707)
28 KOG0285 Pleiotropic regulator 100.0 7.2E-34 1.6E-38 295.2 26.0 276 3-309 145-428 (460)
29 KOG0273 Beta-transducin family 100.0 5.2E-33 1.1E-37 299.1 31.7 269 9-309 235-512 (524)
30 KOG0645 WD40 repeat protein [G 100.0 4E-32 8.7E-37 273.6 34.6 279 2-312 7-303 (312)
31 KOG0284 Polyadenylation factor 100.0 1.5E-34 3.3E-39 305.7 17.2 271 10-310 97-370 (464)
32 KOG0315 G-protein beta subunit 100.0 1.9E-32 4.1E-37 272.2 30.6 278 22-353 11-295 (311)
33 KOG1408 WD40 repeat protein [F 100.0 2E-31 4.3E-36 297.5 39.5 507 5-527 74-721 (1080)
34 KOG0296 Angio-associated migra 100.0 6.9E-32 1.5E-36 282.5 33.6 307 2-312 57-390 (399)
35 cd00200 WD40 WD40 domain, foun 100.0 2.6E-31 5.6E-36 298.1 38.7 282 1-311 1-282 (289)
36 KOG2041 WD40 repeat protein [G 100.0 9.8E-30 2.1E-34 283.6 46.4 684 9-774 14-791 (1189)
37 KOG0285 Pleiotropic regulator 100.0 7.4E-32 1.6E-36 280.2 25.8 301 42-401 142-443 (460)
38 KOG0265 U5 snRNP-specific prot 100.0 2.5E-31 5.4E-36 271.6 28.8 280 3-310 41-328 (338)
39 KOG0645 WD40 repeat protein [G 100.0 2.4E-30 5.1E-35 260.9 34.5 294 43-397 6-311 (312)
40 KOG0266 WD40 repeat-containing 100.0 3.7E-31 8.1E-36 315.1 33.9 279 4-309 153-441 (456)
41 KOG0316 Conserved WD40 repeat- 100.0 4.4E-31 9.6E-36 260.2 27.1 283 2-317 10-297 (307)
42 KOG0315 G-protein beta subunit 100.0 1.2E-30 2.6E-35 259.4 29.9 273 3-299 34-309 (311)
43 KOG0263 Transcription initiati 100.0 1.8E-31 3.8E-36 305.9 27.4 235 46-309 373-638 (707)
44 KOG1539 WD repeat protein [Gen 100.0 4.7E-29 1E-33 285.3 46.5 476 4-518 109-647 (910)
45 KOG0284 Polyadenylation factor 100.0 2.2E-32 4.8E-37 289.4 16.8 285 50-398 95-381 (464)
46 KOG2048 WD40 repeat protein [G 100.0 3.3E-28 7.1E-33 273.4 50.1 487 6-524 22-553 (691)
47 KOG0296 Angio-associated migra 100.0 6.2E-30 1.3E-34 267.9 32.8 333 41-442 54-398 (399)
48 KOG0282 mRNA splicing factor [ 100.0 1.2E-31 2.6E-36 290.2 17.8 282 1-309 206-494 (503)
49 KOG0295 WD40 repeat-containing 100.0 1.6E-30 3.5E-35 271.9 24.6 291 42-396 99-405 (406)
50 KOG2106 Uncharacterized conser 100.0 2.4E-28 5.3E-33 264.5 40.5 468 3-517 98-624 (626)
51 KOG1539 WD repeat protein [Gen 100.0 6.7E-29 1.5E-33 284.0 37.2 430 1-478 194-646 (910)
52 KOG0275 Conserved WD40 repeat- 100.0 4.3E-31 9.2E-36 270.3 16.0 279 7-313 211-502 (508)
53 KOG1063 RNA polymerase II elon 100.0 1.3E-27 2.9E-32 268.4 44.2 485 2-518 47-762 (764)
54 KOG0281 Beta-TrCP (transducin 100.0 2.9E-31 6.2E-36 274.3 13.6 269 8-318 196-476 (499)
55 KOG0265 U5 snRNP-specific prot 100.0 4E-29 8.7E-34 255.5 27.8 285 44-393 40-334 (338)
56 PLN00181 protein SPA1-RELATED; 100.0 2.4E-28 5.2E-33 313.2 42.3 277 5-310 479-783 (793)
57 KOG1408 WD40 repeat protein [F 100.0 5.8E-28 1.3E-32 269.9 38.6 491 14-520 42-672 (1080)
58 KOG0293 WD40 repeat-containing 100.0 1.1E-29 2.3E-34 268.7 22.8 277 3-310 218-503 (519)
59 cd00200 WD40 WD40 domain, foun 100.0 3.5E-28 7.5E-33 272.7 36.6 288 44-395 2-289 (289)
60 KOG0266 WD40 repeat-containing 100.0 1.8E-28 3.8E-33 292.2 33.5 294 45-397 152-454 (456)
61 KOG2106 Uncharacterized conser 100.0 1.4E-26 2.9E-31 251.0 43.4 428 7-479 152-625 (626)
62 KOG0313 Microtubule binding pr 100.0 3E-28 6.5E-33 256.2 26.1 279 7-317 103-416 (423)
63 KOG2041 WD40 repeat protein [G 100.0 2.4E-27 5.1E-32 264.7 33.4 705 1-770 63-905 (1189)
64 KOG0316 Conserved WD40 repeat- 100.0 1E-27 2.2E-32 236.6 26.0 287 43-395 9-297 (307)
65 KOG1407 WD40 repeat protein [F 100.0 2.1E-27 4.7E-32 238.2 27.7 277 4-312 15-294 (313)
66 KOG2048 WD40 repeat protein [G 100.0 5.8E-25 1.3E-29 247.4 50.1 484 5-522 64-604 (691)
67 PLN00181 protein SPA1-RELATED; 100.0 1.8E-26 3.9E-31 295.9 42.4 305 30-396 457-792 (793)
68 KOG1063 RNA polymerase II elon 100.0 1E-25 2.3E-30 253.3 41.7 494 15-519 20-699 (764)
69 KOG0643 Translation initiation 100.0 1.7E-27 3.7E-32 239.5 24.4 279 4-312 5-309 (327)
70 KOG0282 mRNA splicing factor [ 100.0 2.1E-28 4.6E-33 265.1 18.8 291 42-395 205-503 (503)
71 KOG0278 Serine/threonine kinas 100.0 2.6E-28 5.6E-33 242.6 17.9 288 4-350 9-301 (334)
72 KOG1538 Uncharacterized conser 100.0 3.4E-26 7.4E-31 253.8 36.3 420 1-475 45-519 (1081)
73 KOG1274 WD40 repeat protein [G 100.0 9.1E-24 2E-28 245.2 54.6 276 6-307 10-287 (933)
74 KOG0643 Translation initiation 100.0 1.9E-26 4.1E-31 232.0 27.9 307 47-399 6-319 (327)
75 KOG0281 Beta-TrCP (transducin 100.0 2.3E-28 5E-33 252.8 14.4 280 49-401 195-481 (499)
76 KOG1407 WD40 repeat protein [F 100.0 2.1E-26 4.5E-31 231.1 27.5 277 45-386 14-293 (313)
77 KOG0310 Conserved WD40 repeat- 100.0 7.3E-27 1.6E-31 253.9 25.8 278 8-315 25-304 (487)
78 KOG0293 WD40 repeat-containing 100.0 3.3E-27 7.2E-32 249.9 22.0 291 43-398 216-514 (519)
79 KOG1446 Histone H3 (Lys4) meth 100.0 2.9E-25 6.4E-30 230.3 33.9 280 3-309 8-294 (311)
80 KOG0308 Conserved WD40 repeat- 99.9 4.2E-27 9.2E-32 262.5 19.6 360 56-489 29-402 (735)
81 PTZ00421 coronin; Provisional 99.9 3.3E-25 7.2E-30 262.5 36.1 266 8-301 19-314 (493)
82 KOG0278 Serine/threonine kinas 99.9 2.5E-27 5.5E-32 235.6 14.8 247 2-281 52-300 (334)
83 KOG0274 Cdc4 and related F-box 99.9 1E-25 2.2E-30 266.6 30.7 280 8-353 207-489 (537)
84 KOG0973 Histone transcription 99.9 6.6E-26 1.4E-30 268.9 28.3 291 8-321 12-357 (942)
85 KOG0275 Conserved WD40 repeat- 99.9 1.2E-26 2.5E-31 237.9 17.6 284 49-395 211-507 (508)
86 KOG0288 WD40 repeat protein Ti 99.9 8.6E-27 1.9E-31 247.7 17.2 277 3-310 169-451 (459)
87 KOG0283 WD40 repeat-containing 99.9 5.5E-26 1.2E-30 263.5 25.0 254 2-279 259-577 (712)
88 KOG0300 WD40 repeat-containing 99.9 6E-26 1.3E-30 232.2 20.9 290 1-319 140-476 (481)
89 KOG0299 U3 snoRNP-associated p 99.9 1.9E-25 4E-30 241.1 25.5 278 3-310 136-445 (479)
90 KOG0772 Uncharacterized conser 99.9 2.5E-25 5.5E-30 241.8 25.8 285 3-312 161-479 (641)
91 KOG0313 Microtubule binding pr 99.9 2.2E-25 4.9E-30 234.7 24.7 249 2-278 137-418 (423)
92 KOG0283 WD40 repeat-containing 99.9 1.7E-25 3.7E-30 259.4 25.2 238 43-310 258-566 (712)
93 PTZ00420 coronin; Provisional 99.9 4.8E-24 1E-28 253.1 37.5 247 27-302 50-318 (568)
94 KOG0308 Conserved WD40 repeat- 99.9 7.1E-26 1.5E-30 252.8 20.3 263 8-299 20-306 (735)
95 KOG0301 Phospholipase A2-activ 99.9 4.3E-25 9.3E-30 248.6 26.5 278 3-320 8-289 (745)
96 KOG0289 mRNA splicing factor [ 99.9 7.9E-25 1.7E-29 233.8 26.8 275 10-312 220-498 (506)
97 PTZ00421 coronin; Provisional 99.9 1.9E-24 4.2E-29 255.9 33.2 229 4-260 70-315 (493)
98 KOG0305 Anaphase promoting com 99.9 7.2E-25 1.6E-29 249.0 28.0 261 15-309 183-450 (484)
99 KOG0274 Cdc4 and related F-box 99.9 6.5E-25 1.4E-29 259.8 28.8 248 2-286 242-490 (537)
100 KOG0294 WD40 repeat-containing 99.9 1.1E-24 2.4E-29 224.4 26.6 244 2-280 36-283 (362)
101 KOG0647 mRNA export protein (c 99.9 7.4E-25 1.6E-29 224.5 25.0 273 8-309 26-312 (347)
102 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-23 2.4E-28 218.6 33.4 292 42-398 5-304 (311)
103 KOG0640 mRNA cleavage stimulat 99.9 2.8E-25 6E-30 227.2 21.0 293 45-396 106-425 (430)
104 KOG0640 mRNA cleavage stimulat 99.9 5.1E-25 1.1E-29 225.3 22.8 282 4-311 107-417 (430)
105 KOG0277 Peroxisomal targeting 99.9 5.8E-25 1.3E-29 219.8 22.0 270 12-309 11-298 (311)
106 KOG0289 mRNA splicing factor [ 99.9 9.6E-25 2.1E-29 233.2 24.7 251 1-277 253-505 (506)
107 KOG0641 WD40 repeat protein [G 99.9 2.9E-23 6.4E-28 203.2 32.4 276 8-309 31-338 (350)
108 KOG0277 Peroxisomal targeting 99.9 2.7E-25 5.9E-30 222.2 18.6 242 9-277 60-308 (311)
109 KOG0310 Conserved WD40 repeat- 99.9 8.9E-25 1.9E-29 237.8 23.3 238 7-275 66-306 (487)
110 KOG0300 WD40 repeat-containing 99.9 1.4E-24 3E-29 222.3 22.9 296 42-398 139-477 (481)
111 PTZ00420 coronin; Provisional 99.9 1.4E-23 3.1E-28 249.1 34.2 233 2-260 67-318 (568)
112 KOG0268 Sof1-like rRNA process 99.9 1.5E-25 3.3E-30 234.2 15.2 274 2-310 59-335 (433)
113 KOG0299 U3 snoRNP-associated p 99.9 6.3E-24 1.4E-28 229.3 27.2 281 44-387 135-447 (479)
114 KOG0973 Histone transcription 99.9 4.7E-24 1E-28 253.3 28.6 305 50-404 12-362 (942)
115 KOG0288 WD40 repeat protein Ti 99.9 4.2E-25 9.1E-30 234.9 16.6 286 43-394 167-458 (459)
116 KOG0305 Anaphase promoting com 99.9 7.5E-24 1.6E-28 240.7 27.8 281 97-444 181-463 (484)
117 KOG1036 Mitotic spindle checkp 99.9 3E-23 6.5E-28 214.0 27.2 271 9-310 13-294 (323)
118 KOG0772 Uncharacterized conser 99.9 1.9E-23 4.2E-28 227.2 24.9 302 45-397 161-487 (641)
119 KOG2096 WD40 repeat protein [G 99.9 4.6E-23 1E-27 212.0 25.8 295 2-317 79-400 (420)
120 KOG0294 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 208.9 28.4 251 24-309 4-270 (362)
121 KOG1332 Vesicle coat complex C 99.9 1.7E-23 3.6E-28 208.4 17.9 250 4-278 6-286 (299)
122 KOG1332 Vesicle coat complex C 99.9 2.4E-23 5.2E-28 207.3 18.0 239 48-310 8-276 (299)
123 KOG0264 Nucleosome remodeling 99.9 5.6E-23 1.2E-27 222.7 20.9 247 6-278 121-404 (422)
124 KOG2096 WD40 repeat protein [G 99.9 7E-22 1.5E-26 203.4 26.8 309 33-440 63-400 (420)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.7E-21 2.1E-25 215.5 38.5 287 22-375 2-300 (300)
126 KOG0641 WD40 repeat protein [G 99.9 1.8E-21 3.8E-26 190.8 26.7 247 4-278 84-349 (350)
127 KOG0301 Phospholipase A2-activ 99.9 7E-22 1.5E-26 222.9 26.6 283 41-399 4-290 (745)
128 KOG1445 Tumor-specific antigen 99.9 9.3E-21 2E-25 210.0 34.3 478 3-512 73-786 (1012)
129 KOG0639 Transducin-like enhanc 99.9 2.2E-22 4.7E-27 217.8 20.9 272 7-311 417-695 (705)
130 KOG3617 WD40 and TPR repeat-co 99.9 1.6E-21 3.4E-26 222.0 28.5 695 11-768 61-851 (1416)
131 KOG0268 Sof1-like rRNA process 99.9 1.8E-22 3.8E-27 211.5 16.8 286 44-399 59-347 (433)
132 KOG2055 WD40 repeat protein [G 99.9 1.8E-21 3.8E-26 210.2 24.9 291 93-442 213-512 (514)
133 KOG4283 Transcription-coupled 99.9 2.1E-21 4.5E-26 197.9 23.9 291 6-310 40-355 (397)
134 KOG0647 mRNA export protein (c 99.9 5.1E-21 1.1E-25 196.5 26.9 273 49-385 25-313 (347)
135 KOG0646 WD40 repeat protein [G 99.9 7.1E-22 1.5E-26 214.1 21.3 237 9-301 81-330 (476)
136 KOG2055 WD40 repeat protein [G 99.9 2.7E-21 5.9E-26 208.7 25.5 283 9-318 213-511 (514)
137 KOG1963 WD40 repeat protein [G 99.9 1.8E-19 3.9E-24 210.1 40.5 441 14-482 21-540 (792)
138 KOG0267 Microtubule severing p 99.9 4.8E-23 1E-27 232.8 9.8 259 21-314 4-262 (825)
139 KOG1524 WD40 repeat-containing 99.9 2.8E-19 6E-24 195.6 37.8 227 49-310 12-246 (737)
140 KOG0267 Microtubule severing p 99.9 5.5E-23 1.2E-27 232.4 8.9 239 3-270 22-260 (825)
141 KOG0269 WD40 repeat-containing 99.9 3.6E-22 7.8E-27 227.7 14.9 238 12-276 90-338 (839)
142 KOG0264 Nucleosome remodeling 99.9 5.3E-21 1.2E-25 207.4 22.4 234 49-308 122-391 (422)
143 KOG0650 WD40 repeat nucleolar 99.9 9.7E-21 2.1E-25 209.8 24.4 277 4-310 395-725 (733)
144 KOG0646 WD40 repeat protein [G 99.9 1E-20 2.3E-25 205.1 23.5 294 30-378 17-332 (476)
145 KOG1036 Mitotic spindle checkp 99.9 6.5E-20 1.4E-24 189.6 27.4 270 50-385 12-294 (323)
146 COG2319 FOG: WD40 repeat [Gene 99.9 5.7E-18 1.2E-22 201.3 48.6 374 4-443 60-443 (466)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.5E-19 7.5E-24 202.7 35.5 268 2-300 24-300 (300)
148 KOG1273 WD40 repeat protein [G 99.9 8.4E-20 1.8E-24 188.1 26.6 278 12-318 26-321 (405)
149 KOG1273 WD40 repeat protein [G 99.9 3.9E-20 8.4E-25 190.5 22.7 285 54-398 26-323 (405)
150 KOG0321 WD40 repeat-containing 99.9 4E-20 8.8E-25 206.8 24.5 298 7-320 45-392 (720)
151 KOG0269 WD40 repeat-containing 99.9 9.6E-21 2.1E-25 216.2 19.7 262 11-300 41-319 (839)
152 KOG4328 WD40 protein [Function 99.9 3.6E-20 7.8E-25 200.1 22.7 291 3-316 180-490 (498)
153 KOG2445 Nuclear pore complex c 99.9 1.9E-19 4.2E-24 185.4 25.4 249 6-278 10-318 (361)
154 KOG0639 Transducin-like enhanc 99.8 1.2E-20 2.5E-25 204.6 16.2 238 8-277 464-703 (705)
155 KOG1274 WD40 repeat protein [G 99.8 4.5E-19 9.8E-24 206.6 29.4 264 49-380 11-285 (933)
156 KOG0650 WD40 repeat nucleolar 99.8 3E-19 6.5E-24 198.1 25.4 294 45-395 394-733 (733)
157 KOG2445 Nuclear pore complex c 99.8 1.1E-18 2.4E-23 179.8 26.5 248 48-310 10-308 (361)
158 KOG1963 WD40 repeat protein [G 99.8 1E-17 2.2E-22 195.6 37.4 455 2-489 50-592 (792)
159 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-16 4.1E-21 188.2 48.3 369 46-481 60-443 (466)
160 KOG1445 Tumor-specific antigen 99.8 6.8E-19 1.5E-23 195.3 24.8 207 205-443 628-845 (1012)
161 KOG0302 Ribosome Assembly prot 99.8 3.6E-19 7.9E-24 187.8 21.4 244 49-317 149-436 (440)
162 KOG4328 WD40 protein [Function 99.8 6E-19 1.3E-23 190.7 23.4 299 40-397 175-495 (498)
163 KOG0302 Ribosome Assembly prot 99.8 4.3E-19 9.2E-24 187.3 21.0 246 5-276 147-436 (440)
164 KOG1034 Transcriptional repres 99.8 1.6E-18 3.5E-23 180.0 24.2 303 5-312 34-375 (385)
165 KOG0270 WD40 repeat-containing 99.8 3E-19 6.5E-24 192.7 18.8 245 13-283 177-454 (463)
166 KOG1009 Chromatin assembly com 99.8 2.9E-18 6.3E-23 183.1 24.7 296 9-314 13-366 (434)
167 KOG2919 Guanine nucleotide-bin 99.8 4.2E-18 9.1E-23 176.3 22.6 273 10-311 50-361 (406)
168 KOG4378 Nuclear protein COP1 [ 99.8 1.5E-18 3.2E-23 188.4 20.0 260 10-302 35-305 (673)
169 KOG0307 Vesicle coat complex C 99.8 2E-19 4.4E-24 214.9 12.6 245 9-281 64-330 (1049)
170 KOG4378 Nuclear protein COP1 [ 99.8 4.3E-18 9.3E-23 184.8 21.1 287 27-377 8-305 (673)
171 KOG0321 WD40 repeat-containing 99.8 3E-18 6.5E-23 192.0 19.9 252 3-280 94-393 (720)
172 KOG1034 Transcriptional repres 99.8 4.1E-18 8.8E-23 177.1 17.9 254 8-278 88-383 (385)
173 KOG0644 Uncharacterized conser 99.8 3.3E-19 7.1E-24 204.1 10.5 275 1-314 182-462 (1113)
174 KOG1009 Chromatin assembly com 99.8 1.4E-16 3.1E-21 170.3 29.2 325 135-512 13-364 (434)
175 KOG4283 Transcription-coupled 99.8 2.6E-17 5.6E-22 168.3 22.1 247 6-277 98-364 (397)
176 KOG0642 Cell-cycle nuclear pro 99.8 2E-18 4.3E-23 191.6 14.8 264 4-289 289-572 (577)
177 KOG0307 Vesicle coat complex C 99.8 1.9E-18 4.1E-23 206.7 13.6 271 12-309 9-316 (1049)
178 KOG0270 WD40 repeat-containing 99.8 3.2E-17 7E-22 177.1 19.5 267 14-309 130-438 (463)
179 KOG1912 WD40 repeat protein [G 99.7 3.3E-14 7.1E-19 162.5 42.6 420 10-442 16-551 (1062)
180 KOG2919 Guanine nucleotide-bin 99.7 4.1E-16 9E-21 161.7 24.2 288 54-402 52-372 (406)
181 KOG3616 Selective LIM binding 99.7 7.4E-16 1.6E-20 173.9 28.1 527 204-818 14-606 (1636)
182 KOG4497 Uncharacterized conser 99.7 1.8E-16 3.8E-21 164.5 20.9 404 14-516 13-428 (447)
183 PF04762 IKI3: IKI3 family; I 99.7 1.7E-12 3.6E-17 164.8 61.3 508 8-593 74-692 (928)
184 KOG0322 G-protein beta subunit 99.7 9.9E-17 2.1E-21 162.1 16.4 248 3-277 8-322 (323)
185 KOG0303 Actin-binding protein 99.7 3.7E-16 8E-21 166.1 20.4 230 4-260 76-321 (472)
186 KOG1007 WD repeat protein TSSC 99.7 7E-16 1.5E-20 157.7 21.1 257 22-307 27-347 (370)
187 KOG1007 WD repeat protein TSSC 99.7 3.6E-16 7.8E-21 159.8 18.8 247 4-278 58-361 (370)
188 KOG4227 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 160.8 22.8 284 4-309 51-376 (609)
189 KOG1517 Guanine nucleotide bin 99.7 1.6E-15 3.4E-20 178.5 25.7 276 9-310 1064-1371(1387)
190 KOG0290 Conserved WD40 repeat- 99.7 1.9E-15 4.2E-20 154.7 22.8 276 11-314 46-360 (364)
191 KOG4497 Uncharacterized conser 99.7 9.2E-16 2E-20 159.2 20.6 217 56-312 13-232 (447)
192 KOG0642 Cell-cycle nuclear pro 99.7 2.2E-16 4.8E-21 175.5 16.2 238 46-309 289-550 (577)
193 KOG1188 WD40 repeat protein [G 99.7 9E-16 1.9E-20 160.9 19.6 289 106-442 41-346 (376)
194 KOG0644 Uncharacterized conser 99.7 1.9E-17 4.1E-22 189.9 7.4 246 43-323 182-430 (1113)
195 KOG0649 WD40 repeat protein [G 99.7 1.8E-14 3.9E-19 144.0 26.5 260 11-300 12-295 (325)
196 KOG1188 WD40 repeat protein [G 99.7 1.6E-15 3.6E-20 159.0 18.4 263 22-310 41-336 (376)
197 KOG4227 WD40 repeat protein [G 99.7 3.5E-15 7.5E-20 157.7 20.5 258 87-400 50-325 (609)
198 PRK11028 6-phosphogluconolacto 99.7 1.5E-13 3.3E-18 158.7 35.4 259 26-309 7-292 (330)
199 KOG0649 WD40 repeat protein [G 99.7 4.1E-14 8.9E-19 141.5 25.7 245 96-398 13-275 (325)
200 KOG0303 Actin-binding protein 99.7 5.3E-15 1.1E-19 157.4 20.1 218 130-400 76-297 (472)
201 KOG1587 Cytoplasmic dynein int 99.7 8.3E-15 1.8E-19 172.5 23.0 245 9-279 242-517 (555)
202 KOG1517 Guanine nucleotide bin 99.6 1.8E-14 3.8E-19 169.8 25.4 294 50-399 1063-1383(1387)
203 KOG1523 Actin-related protein 99.6 1.2E-14 2.5E-19 151.4 21.0 248 47-317 6-276 (361)
204 KOG1587 Cytoplasmic dynein int 99.6 5.4E-14 1.2E-18 165.6 28.9 280 73-399 222-518 (555)
205 KOG2110 Uncharacterized conser 99.6 3.1E-13 6.7E-18 143.7 30.3 314 51-405 5-338 (391)
206 PRK01742 tolB translocation pr 99.6 2.2E-14 4.8E-19 170.9 24.7 233 30-301 183-426 (429)
207 KOG3617 WD40 and TPR repeat-co 99.6 1.8E-13 4E-18 157.1 30.3 205 563-771 741-1021(1416)
208 PRK11028 6-phosphogluconolacto 99.6 8.8E-13 1.9E-17 152.3 36.7 275 66-398 5-305 (330)
209 KOG1334 WD40 repeat protein [G 99.6 2.9E-15 6.3E-20 163.5 13.3 300 2-316 135-463 (559)
210 KOG0322 G-protein beta subunit 99.6 8.3E-15 1.8E-19 148.3 14.7 248 44-310 7-313 (323)
211 KOG1523 Actin-related protein 99.6 4E-14 8.6E-19 147.5 19.7 255 3-270 4-270 (361)
212 KOG2139 WD40 repeat protein [G 99.6 3.7E-13 7.9E-18 142.1 26.1 252 10-313 99-368 (445)
213 KOG1240 Protein kinase contain 99.6 2E-13 4.4E-18 163.8 25.7 227 36-289 1034-1284(1431)
214 KOG1912 WD40 repeat protein [G 99.6 1.3E-12 2.8E-17 149.7 30.0 480 2-503 48-726 (1062)
215 KOG1272 WD40-repeat-containing 99.6 6.7E-15 1.4E-19 159.7 11.1 268 11-314 131-403 (545)
216 PF02239 Cytochrom_D1: Cytochr 99.6 4.6E-12 9.9E-17 146.0 35.2 320 22-398 6-348 (369)
217 PRK01742 tolB translocation pr 99.6 7.4E-14 1.6E-18 166.3 21.1 218 3-259 197-426 (429)
218 KOG1240 Protein kinase contain 99.6 3E-13 6.5E-18 162.3 24.7 256 1-282 1040-1338(1431)
219 KOG0290 Conserved WD40 repeat- 99.6 1.5E-13 3.3E-18 141.0 19.0 234 7-269 94-357 (364)
220 KOG0771 Prolactin regulatory e 99.6 3.3E-14 7.2E-19 153.9 14.8 197 13-236 148-356 (398)
221 KOG0771 Prolactin regulatory e 99.6 4.6E-14 1E-18 152.8 15.0 200 55-278 148-354 (398)
222 KOG2110 Uncharacterized conser 99.5 1.6E-12 3.5E-17 138.3 25.9 239 7-281 3-251 (391)
223 KOG1310 WD40 repeat protein [G 99.5 4.9E-14 1.1E-18 155.3 13.5 236 3-238 44-307 (758)
224 PRK03629 tolB translocation pr 99.5 3.5E-12 7.7E-17 151.6 29.7 235 31-301 179-428 (429)
225 KOG1310 WD40 repeat protein [G 99.5 1.1E-13 2.4E-18 152.6 14.6 226 44-286 43-311 (758)
226 KOG1920 IkappaB kinase complex 99.5 1.4E-09 3.1E-14 132.0 50.2 307 8-347 17-393 (1265)
227 KOG2139 WD40 repeat protein [G 99.5 3.7E-12 8E-17 134.7 24.9 265 94-387 99-367 (445)
228 COG5354 Uncharacterized protei 99.5 2.2E-11 4.7E-16 134.6 31.6 373 34-509 15-418 (561)
229 KOG2111 Uncharacterized conser 99.5 3.4E-11 7.3E-16 126.0 30.6 239 10-280 6-258 (346)
230 PRK05137 tolB translocation pr 99.5 7E-12 1.5E-16 150.0 29.7 233 31-300 182-432 (435)
231 KOG2111 Uncharacterized conser 99.5 6.3E-11 1.4E-15 124.0 32.5 239 53-321 7-258 (346)
232 KOG1272 WD40-repeat-containing 99.5 5.4E-14 1.2E-18 152.8 10.2 229 54-317 132-360 (545)
233 PRK04922 tolB translocation pr 99.5 4.6E-12 9.9E-17 151.4 27.7 234 31-300 184-432 (433)
234 PF02239 Cytochrom_D1: Cytochr 99.5 2.6E-10 5.7E-15 131.5 39.8 323 108-490 9-357 (369)
235 PRK03629 tolB translocation pr 99.5 6.3E-12 1.4E-16 149.4 26.8 221 4-259 193-428 (429)
236 COG4946 Uncharacterized protei 99.5 1E-09 2.2E-14 120.0 40.7 152 200-384 355-507 (668)
237 PRK02889 tolB translocation pr 99.5 5.3E-12 1.1E-16 150.3 25.9 235 31-301 176-425 (427)
238 KOG2315 Predicted translation 99.5 3.6E-11 7.9E-16 134.7 28.3 321 204-538 34-409 (566)
239 KOG1334 WD40 repeat protein [G 99.4 8.9E-13 1.9E-17 144.4 14.4 310 85-442 134-466 (559)
240 KOG2315 Predicted translation 99.4 1.5E-10 3.3E-15 129.8 32.1 361 74-500 12-410 (566)
241 PRK04922 tolB translocation pr 99.4 1.2E-11 2.5E-16 147.9 25.0 221 3-258 197-432 (433)
242 PRK05137 tolB translocation pr 99.4 2.2E-11 4.8E-16 145.7 27.1 221 3-259 195-433 (435)
243 KOG0974 WD-repeat protein WDR6 99.4 3.1E-10 6.7E-15 135.9 34.8 199 9-237 87-291 (967)
244 COG5354 Uncharacterized protei 99.4 8.4E-11 1.8E-15 130.0 27.7 347 5-433 28-420 (561)
245 PRK02889 tolB translocation pr 99.4 1.3E-11 2.7E-16 147.0 23.2 222 3-259 189-425 (427)
246 KOG2314 Translation initiation 99.4 6.4E-11 1.4E-15 131.7 26.6 322 13-399 214-575 (698)
247 KOG2314 Translation initiation 99.4 9.1E-11 2E-15 130.5 27.0 351 96-502 213-594 (698)
248 KOG3881 Uncharacterized conser 99.4 2.6E-11 5.6E-16 130.1 21.6 263 8-301 54-342 (412)
249 KOG1354 Serine/threonine prote 99.4 2.8E-11 6.1E-16 127.3 21.1 257 9-281 25-362 (433)
250 KOG2321 WD40 repeat protein [G 99.4 4.4E-11 9.6E-16 133.5 23.8 279 7-312 49-335 (703)
251 PF04762 IKI3: IKI3 family; I 99.4 4.7E-08 1E-12 124.7 53.1 259 52-317 22-331 (928)
252 KOG1409 Uncharacterized conser 99.4 2E-11 4.4E-16 128.5 17.9 209 1-235 16-271 (404)
253 PF08662 eIF2A: Eukaryotic tra 99.4 5E-11 1.1E-15 124.9 20.8 150 13-167 9-181 (194)
254 KOG2394 WD40 protein DMR-N9 [G 99.4 7E-12 1.5E-16 138.9 14.0 137 9-145 219-384 (636)
255 KOG3881 Uncharacterized conser 99.3 5.4E-11 1.2E-15 127.7 19.7 220 8-259 104-342 (412)
256 KOG2321 WD40 repeat protein [G 99.3 2.3E-10 4.9E-15 128.0 24.4 282 49-397 49-343 (703)
257 KOG2394 WD40 protein DMR-N9 [G 99.3 4.3E-11 9.2E-16 132.8 18.5 240 54-300 126-384 (636)
258 PF10282 Lactonase: Lactonase, 99.3 7.4E-09 1.6E-13 119.8 38.1 266 203-498 35-345 (345)
259 PF10282 Lactonase: Lactonase, 99.3 3.3E-08 7.2E-13 114.4 42.4 264 24-310 2-311 (345)
260 KOG0974 WD-repeat protein WDR6 99.3 1.2E-09 2.7E-14 130.8 30.6 196 53-279 89-289 (967)
261 TIGR02800 propeller_TolB tol-p 99.3 5.4E-10 1.2E-14 133.8 28.1 223 31-289 170-407 (417)
262 PRK00178 tolB translocation pr 99.3 8.7E-10 1.9E-14 132.2 28.4 234 32-301 180-428 (430)
263 PRK04792 tolB translocation pr 99.3 7.8E-10 1.7E-14 132.1 27.2 233 32-300 199-446 (448)
264 KOG2114 Vacuolar assembly/sort 99.3 4.6E-09 9.9E-14 123.4 32.3 230 255-512 30-275 (933)
265 PRK00178 tolB translocation pr 99.3 8.2E-10 1.8E-14 132.4 26.7 222 3-259 192-428 (430)
266 KOG1354 Serine/threonine prote 99.3 3.8E-10 8.1E-15 118.9 20.1 188 92-280 24-246 (433)
267 COG4946 Uncharacterized protei 99.3 4.5E-08 9.7E-13 107.4 36.5 407 50-512 35-510 (668)
268 TIGR02800 propeller_TolB tol-p 99.3 7.6E-10 1.6E-14 132.5 25.6 201 3-235 183-398 (417)
269 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.1E-08 8.8E-13 110.6 35.7 281 20-353 11-337 (352)
270 PF08662 eIF2A: Eukaryotic tra 99.2 7.6E-10 1.6E-14 116.0 20.6 151 55-237 9-182 (194)
271 PRK01029 tolB translocation pr 99.2 4.3E-09 9.3E-14 124.7 29.0 239 31-301 165-425 (428)
272 COG2706 3-carboxymuconate cycl 99.2 3.6E-08 7.8E-13 106.3 32.7 287 225-537 15-341 (346)
273 PRK01029 tolB translocation pr 99.2 2.7E-09 5.9E-14 126.4 26.3 224 5-260 180-426 (428)
274 PRK04792 tolB translocation pr 99.2 2E-09 4.4E-14 128.5 25.2 219 6-259 214-447 (448)
275 COG2706 3-carboxymuconate cycl 99.2 1E-07 2.2E-12 102.8 33.9 274 72-400 15-324 (346)
276 TIGR02658 TTQ_MADH_Hv methylam 99.1 5.4E-07 1.2E-11 101.6 37.1 240 212-488 53-338 (352)
277 KOG1409 Uncharacterized conser 99.1 1E-08 2.3E-13 108.5 21.6 251 42-322 15-273 (404)
278 KOG4547 WD40 repeat-containing 99.1 8.3E-09 1.8E-13 117.2 22.3 189 18-235 2-221 (541)
279 KOG1064 RAVE (regulator of V-A 99.1 8.6E-10 1.9E-14 137.2 14.0 191 6-238 2205-2402(2439)
280 KOG0280 Uncharacterized conser 99.1 1.5E-08 3.3E-13 105.2 20.3 243 10-279 70-334 (339)
281 KOG4547 WD40 repeat-containing 99.1 2.5E-08 5.5E-13 113.3 23.8 187 61-278 3-220 (541)
282 KOG1920 IkappaB kinase complex 99.1 1.6E-05 3.5E-10 97.7 48.8 221 93-318 68-321 (1265)
283 KOG1064 RAVE (regulator of V-A 99.0 1.1E-09 2.4E-14 136.4 13.4 218 29-289 2188-2409(2439)
284 KOG3616 Selective LIM binding 99.0 2.7E-07 5.8E-12 105.9 29.0 53 721-773 769-821 (1636)
285 PLN02919 haloacid dehalogenase 99.0 3.9E-07 8.5E-12 118.8 33.6 261 13-282 571-892 (1057)
286 KOG0280 Uncharacterized conser 99.0 1.6E-07 3.5E-12 97.8 23.7 269 10-308 15-319 (339)
287 TIGR03300 assembly_YfgL outer 98.9 7.4E-07 1.6E-11 105.0 31.0 263 20-293 64-353 (377)
288 PF04053 Coatomer_WDAD: Coatom 98.9 3.1E-07 6.7E-12 107.5 25.9 351 292-712 34-439 (443)
289 PLN02919 haloacid dehalogenase 98.9 2.4E-06 5.2E-11 111.5 34.6 262 55-357 571-899 (1057)
290 KOG4190 Uncharacterized conser 98.9 1.4E-08 3.1E-13 112.4 11.9 183 85-292 727-920 (1034)
291 KOG4190 Uncharacterized conser 98.9 9.1E-09 2E-13 114.0 10.1 215 44-287 728-957 (1034)
292 KOG0309 Conserved WD40 repeat- 98.8 1.9E-08 4.2E-13 115.4 13.0 263 9-300 24-309 (1081)
293 KOG4532 WD40-like repeat conta 98.8 8.5E-07 1.8E-11 91.2 23.2 232 29-291 50-295 (344)
294 KOG2114 Vacuolar assembly/sort 98.8 2.1E-06 4.6E-11 101.5 29.7 196 210-444 29-245 (933)
295 KOG2066 Vacuolar assembly/sort 98.8 4E-06 8.7E-11 98.7 30.7 188 136-398 40-234 (846)
296 PRK04043 tolB translocation pr 98.8 3.1E-06 6.7E-11 99.8 30.6 211 31-279 169-401 (419)
297 PF15492 Nbas_N: Neuroblastoma 98.8 4.1E-06 8.8E-11 88.2 27.5 233 15-288 3-269 (282)
298 KOG4532 WD40-like repeat conta 98.8 8.2E-07 1.8E-11 91.3 21.7 241 14-279 72-332 (344)
299 PRK04043 tolB translocation pr 98.8 2E-06 4.3E-11 101.4 28.5 194 250-482 189-402 (419)
300 KOG0309 Conserved WD40 repeat- 98.8 3.1E-08 6.7E-13 113.8 11.4 241 12-279 70-340 (1081)
301 COG5170 CDC55 Serine/threonine 98.8 2.1E-07 4.5E-12 97.1 15.7 255 8-277 25-366 (460)
302 KOG3914 WD repeat protein WDR4 98.7 1.3E-07 2.8E-12 102.9 13.7 159 11-171 64-229 (390)
303 PF08450 SGL: SMP-30/Gluconola 98.7 3.9E-05 8.4E-10 84.5 33.1 218 56-308 4-243 (246)
304 PF08450 SGL: SMP-30/Gluconola 98.7 5.7E-05 1.2E-09 83.1 33.1 223 14-266 4-243 (246)
305 TIGR03300 assembly_YfgL outer 98.7 4.6E-05 1E-09 89.8 34.0 264 63-356 65-348 (377)
306 KOG0882 Cyclophilin-related pe 98.7 4.9E-07 1.1E-11 99.1 15.4 266 7-287 7-314 (558)
307 KOG1832 HIV-1 Vpr-binding prot 98.6 2E-08 4.4E-13 117.1 4.6 259 3-308 1095-1377(1516)
308 PF07433 DUF1513: Protein of u 98.6 3.8E-05 8.3E-10 83.6 27.5 236 10-273 5-280 (305)
309 PF13360 PQQ_2: PQQ-like domai 98.6 3.5E-05 7.5E-10 84.4 28.0 231 29-285 1-237 (238)
310 KOG3914 WD repeat protein WDR4 98.5 5.4E-07 1.2E-11 98.2 12.3 156 54-238 65-227 (390)
311 PF07433 DUF1513: Protein of u 98.5 6.1E-05 1.3E-09 82.1 28.0 252 208-513 8-279 (305)
312 KOG1832 HIV-1 Vpr-binding prot 98.5 7.8E-08 1.7E-12 112.4 5.7 224 42-307 1092-1318(1516)
313 KOG2066 Vacuolar assembly/sort 98.4 4.9E-06 1.1E-10 98.0 16.6 148 10-172 40-194 (846)
314 PRK11138 outer membrane biogen 98.4 0.00014 3.1E-09 86.1 29.7 261 20-289 68-364 (394)
315 PF11768 DUF3312: Protein of u 98.4 0.0041 8.9E-08 72.4 39.7 92 391-482 238-331 (545)
316 PF15492 Nbas_N: Neuroblastoma 98.4 0.00022 4.7E-09 75.5 26.6 146 57-224 3-167 (282)
317 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00021 4.6E-09 73.7 25.5 149 147-327 23-184 (354)
318 KOG0882 Cyclophilin-related pe 98.4 2.3E-06 5E-11 94.0 11.8 211 49-287 7-240 (558)
319 COG5170 CDC55 Serine/threonine 98.4 8.2E-06 1.8E-10 85.5 14.8 264 204-470 26-355 (460)
320 KOG4714 Nucleoporin [Nuclear s 98.3 5.6E-06 1.2E-10 85.1 11.9 150 16-166 96-255 (319)
321 PRK02888 nitrous-oxide reducta 98.3 0.00015 3.2E-09 86.1 25.3 304 149-470 68-449 (635)
322 KOG4714 Nucleoporin [Nuclear s 98.3 1.3E-05 2.7E-10 82.5 13.7 196 12-235 39-255 (319)
323 PRK11138 outer membrane biogen 98.3 0.00067 1.4E-08 80.4 30.9 265 63-356 69-363 (394)
324 KOG1897 Damage-specific DNA bi 98.3 0.031 6.7E-07 68.5 47.8 455 16-521 446-944 (1096)
325 KOG2695 WD40 repeat protein [G 98.3 1.9E-06 4.1E-11 91.7 7.7 168 1-174 205-385 (425)
326 KOG1645 RING-finger-containing 98.3 4.5E-05 9.7E-10 83.2 17.9 93 75-168 175-269 (463)
327 KOG1275 PAB-dependent poly(A) 98.2 3.9E-05 8.4E-10 91.4 18.6 182 63-276 147-340 (1118)
328 PF00400 WD40: WD domain, G-be 98.2 3.4E-06 7.4E-11 62.9 6.6 39 41-79 1-39 (39)
329 PF13360 PQQ_2: PQQ-like domai 98.2 0.00036 7.9E-09 76.3 25.3 184 71-284 1-197 (238)
330 KOG1275 PAB-dependent poly(A) 98.2 2.2E-05 4.7E-10 93.5 15.9 185 20-232 146-340 (1118)
331 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00032 7E-09 81.5 25.7 287 213-509 1-346 (353)
332 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0015 3.2E-08 76.0 31.1 315 102-469 1-344 (353)
333 PF14583 Pectate_lyase22: Olig 98.2 0.003 6.5E-08 71.2 31.3 333 37-397 16-381 (386)
334 KOG1645 RING-finger-containing 98.2 7.1E-05 1.5E-09 81.7 17.0 258 33-319 175-461 (463)
335 PF00400 WD40: WD domain, G-be 98.1 6E-06 1.3E-10 61.6 6.2 36 2-37 4-39 (39)
336 KOG3621 WD40 repeat-containing 98.1 0.00014 3E-09 85.1 20.1 137 8-144 32-179 (726)
337 PF14583 Pectate_lyase22: Olig 98.1 0.0013 2.9E-08 74.0 27.3 287 210-511 41-371 (386)
338 KOG1897 Damage-specific DNA bi 98.1 0.055 1.2E-06 66.5 53.6 496 9-516 306-895 (1096)
339 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.008 1.7E-07 62.5 30.2 143 21-165 23-165 (354)
340 KOG2695 WD40 repeat protein [G 98.1 3.6E-06 7.8E-11 89.6 6.2 126 8-134 251-387 (425)
341 PF08596 Lgl_C: Lethal giant l 98.0 0.0018 4E-08 75.2 26.1 276 11-317 3-333 (395)
342 KOG3621 WD40 repeat-containing 98.0 0.001 2.2E-08 78.2 23.3 139 135-299 33-179 (726)
343 COG5290 IkappaB kinase complex 97.9 0.02 4.3E-07 68.0 32.5 96 207-303 249-349 (1243)
344 PF06433 Me-amine-dh_H: Methyl 97.9 0.02 4.3E-07 63.6 31.1 269 31-353 17-327 (342)
345 cd00216 PQQ_DH Dehydrogenases 97.9 0.0064 1.4E-07 73.9 30.1 288 21-357 61-435 (488)
346 PF04841 Vps16_N: Vps16, N-ter 97.9 0.011 2.3E-07 69.9 30.5 245 74-347 62-315 (410)
347 PF00780 CNH: CNH domain; Int 97.8 0.015 3.2E-07 65.2 28.9 249 214-496 5-271 (275)
348 PF06433 Me-amine-dh_H: Methyl 97.8 0.018 4E-07 63.8 27.8 56 435-490 270-330 (342)
349 cd00216 PQQ_DH Dehydrogenases 97.8 0.016 3.5E-07 70.4 29.9 251 22-308 111-455 (488)
350 PF11768 DUF3312: Protein of u 97.8 0.03 6.5E-07 65.5 29.9 77 199-279 254-330 (545)
351 COG3391 Uncharacterized conser 97.7 0.031 6.8E-07 65.5 30.9 253 11-289 32-294 (381)
352 COG0823 TolB Periplasmic compo 97.7 0.00072 1.6E-08 79.4 16.6 164 338-512 218-391 (425)
353 PRK02888 nitrous-oxide reducta 97.7 0.0056 1.2E-07 73.1 23.8 235 259-520 140-405 (635)
354 PF06977 SdiA-regulated: SdiA- 97.7 0.0098 2.1E-07 64.3 23.6 203 88-311 16-242 (248)
355 KOG2280 Vacuolar assembly/sort 97.7 0.016 3.5E-07 69.0 26.2 355 389-752 64-568 (829)
356 PF04841 Vps16_N: Vps16, N-ter 97.7 0.032 6.9E-07 65.9 29.3 210 14-260 33-271 (410)
357 PF08596 Lgl_C: Lethal giant l 97.6 0.011 2.4E-07 68.9 23.8 289 53-398 3-336 (395)
358 COG0823 TolB Periplasmic compo 97.6 0.0038 8.2E-08 73.4 19.9 195 242-471 186-388 (425)
359 PF00780 CNH: CNH domain; Int 97.6 0.044 9.5E-07 61.3 27.5 241 19-290 5-267 (275)
360 PF06977 SdiA-regulated: SdiA- 97.5 0.043 9.3E-07 59.4 25.4 205 242-477 15-247 (248)
361 PF02897 Peptidase_S9_N: Proly 97.5 0.097 2.1E-06 62.5 31.5 244 12-283 126-409 (414)
362 PF03178 CPSF_A: CPSF A subuni 97.5 0.023 5.1E-07 65.1 24.2 216 31-275 2-262 (321)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.32 7E-06 59.5 34.2 109 21-132 69-198 (527)
364 PF02897 Peptidase_S9_N: Proly 97.4 0.052 1.1E-06 64.8 27.0 244 207-485 126-409 (414)
365 KOG1008 Uncharacterized conser 97.4 4.8E-05 1E-09 87.5 0.8 203 9-235 56-276 (783)
366 COG3391 Uncharacterized conser 97.4 0.31 6.7E-06 57.2 32.5 247 33-310 13-272 (381)
367 PF15390 DUF4613: Domain of un 97.3 0.16 3.4E-06 59.5 27.6 150 9-166 19-187 (671)
368 KOG1008 Uncharacterized conser 97.2 0.00015 3.3E-09 83.6 1.8 159 6-166 99-276 (783)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.43 9.3E-06 58.4 31.6 264 22-289 121-501 (527)
370 PRK13616 lipoprotein LpqB; Pro 97.1 0.038 8.3E-07 67.9 22.2 213 225-471 328-558 (591)
371 PRK10115 protease 2; Provision 97.1 1.4 3E-05 55.9 35.4 240 206-483 128-397 (686)
372 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.41 8.8E-06 55.8 27.9 271 14-288 6-408 (415)
373 PF08553 VID27: VID27 cytoplas 97.0 0.081 1.8E-06 65.9 23.2 142 63-233 493-646 (794)
374 KOG4640 Anaphase-promoting com 97.0 0.0031 6.7E-08 73.4 9.6 79 9-88 20-99 (665)
375 PF03178 CPSF_A: CPSF A subuni 96.9 0.11 2.4E-06 59.7 22.5 141 21-166 42-203 (321)
376 COG3386 Gluconolactonase [Carb 96.9 0.35 7.6E-06 54.4 25.4 231 210-470 30-274 (307)
377 COG3204 Uncharacterized protei 96.9 0.2 4.3E-06 53.9 21.6 207 89-314 81-307 (316)
378 COG3490 Uncharacterized protei 96.7 0.14 3E-06 54.4 18.8 161 209-381 72-241 (366)
379 COG3386 Gluconolactonase [Carb 96.7 0.41 8.8E-06 53.8 24.2 227 14-267 29-274 (307)
380 COG3490 Uncharacterized protei 96.7 0.44 9.5E-06 50.8 22.0 249 82-395 57-346 (366)
381 KOG4640 Anaphase-promoting com 96.7 0.006 1.3E-07 71.1 9.3 92 52-144 21-114 (665)
382 PRK13616 lipoprotein LpqB; Pro 96.7 0.11 2.5E-06 63.8 21.0 189 52-273 350-563 (591)
383 PF15390 DUF4613: Domain of un 96.7 0.96 2.1E-05 53.3 26.5 117 202-318 54-185 (671)
384 smart00320 WD40 WD40 repeats. 96.7 0.0041 8.9E-08 44.8 5.4 39 41-79 2-40 (40)
385 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.92 2E-05 52.9 26.8 107 56-164 6-145 (415)
386 PF05694 SBP56: 56kDa selenium 96.7 1.1 2.4E-05 51.5 26.4 213 20-238 86-346 (461)
387 KOG2079 Vacuolar assembly/sort 96.6 0.027 5.9E-07 69.6 14.4 101 20-122 98-202 (1206)
388 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.19 4.2E-06 46.3 15.9 100 54-160 2-109 (111)
389 PRK10115 protease 2; Provision 96.5 4.4 9.4E-05 51.5 34.7 111 52-164 127-254 (686)
390 PF14870 PSII_BNR: Photosynthe 96.4 2.2 4.7E-05 47.8 29.3 185 219-439 117-301 (302)
391 KOG0985 Vesicle coat protein c 96.4 0.11 2.5E-06 63.6 17.7 50 721-770 472-521 (1666)
392 PF10647 Gmad1: Lipoprotein Lp 96.4 0.67 1.4E-05 50.9 23.0 167 250-449 25-204 (253)
393 smart00320 WD40 WD40 repeats. 96.4 0.01 2.2E-07 42.6 5.8 39 83-121 2-40 (40)
394 PF12234 Rav1p_C: RAVE protein 96.3 0.45 9.8E-06 58.0 22.3 107 415-522 32-159 (631)
395 PF08553 VID27: VID27 cytoplas 96.3 0.065 1.4E-06 66.7 15.5 141 22-164 494-646 (794)
396 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.15 3.2E-06 47.0 13.8 100 12-118 2-109 (111)
397 COG3204 Uncharacterized protei 96.3 0.68 1.5E-05 50.0 20.6 174 47-237 81-266 (316)
398 KOG2079 Vacuolar assembly/sort 96.2 0.068 1.5E-06 66.2 14.7 103 61-165 97-203 (1206)
399 TIGR03118 PEPCTERM_chp_1 conse 96.1 2.2 4.7E-05 46.6 23.5 224 249-490 23-289 (336)
400 COG5290 IkappaB kinase complex 96.1 5.3 0.00011 48.6 33.4 44 726-769 931-974 (1243)
401 PHA02713 hypothetical protein; 96.1 0.31 6.7E-06 60.2 19.9 67 215-283 463-538 (557)
402 TIGR03074 PQQ_membr_DH membran 96.0 7 0.00015 49.8 37.6 111 21-132 194-353 (764)
403 PRK13684 Ycf48-like protein; P 96.0 3.6 7.8E-05 47.3 27.3 268 9-315 45-327 (334)
404 COG5276 Uncharacterized conser 96.0 2.9 6.3E-05 45.1 25.7 185 248-444 86-287 (370)
405 TIGR03118 PEPCTERM_chp_1 conse 96.0 3.2 7E-05 45.4 25.7 237 54-300 25-307 (336)
406 KOG2395 Protein involved in va 95.9 0.09 2E-06 60.3 13.0 143 20-165 344-500 (644)
407 PF14870 PSII_BNR: Photosynthe 95.9 3.9 8.5E-05 45.8 28.2 267 9-313 16-298 (302)
408 PF07995 GSDH: Glucose / Sorbo 95.9 4.7 0.0001 46.3 28.9 258 11-273 3-330 (331)
409 KOG1898 Splicing factor 3b, su 95.6 9.5 0.00021 48.2 36.6 190 339-538 854-1067(1205)
410 KOG4441 Proteins containing BT 95.5 0.87 1.9E-05 56.2 20.6 230 19-281 283-549 (571)
411 PLN03081 pentatricopeptide (PP 95.4 0.23 4.9E-06 63.7 15.8 130 641-770 267-418 (697)
412 KOG2395 Protein involved in va 95.3 0.21 4.7E-06 57.4 13.1 139 65-233 348-499 (644)
413 PLN03218 maturation of RBCL 1; 95.3 0.23 5.1E-06 65.3 15.5 156 614-769 476-675 (1060)
414 PF05096 Glu_cyclase_2: Glutam 95.2 3.3 7.1E-05 44.9 20.9 196 11-223 46-249 (264)
415 KOG0985 Vesicle coat protein c 95.2 0.22 4.7E-06 61.4 13.1 99 614-716 1052-1161(1666)
416 PLN03218 maturation of RBCL 1; 95.1 0.23 5E-06 65.4 14.6 157 614-770 546-746 (1060)
417 PF10647 Gmad1: Lipoprotein Lp 95.0 7 0.00015 42.9 23.8 153 53-226 25-187 (253)
418 smart00036 CNH Domain found in 95.0 8.3 0.00018 43.6 29.2 239 20-288 12-280 (302)
419 TIGR00990 3a0801s09 mitochondr 94.9 0.42 9.1E-06 60.3 15.8 43 645-687 445-492 (615)
420 KOG2247 WD40 repeat-containing 94.8 0.0076 1.6E-07 68.1 -0.0 297 12-313 37-361 (615)
421 TIGR02521 type_IV_pilW type IV 94.8 0.68 1.5E-05 49.4 15.5 129 641-769 73-229 (234)
422 PRK11788 tetratricopeptide rep 94.7 0.54 1.2E-05 55.5 15.4 156 614-769 73-275 (389)
423 KOG2444 WD40 repeat protein [G 94.6 0.094 2E-06 54.3 7.1 104 21-124 70-178 (238)
424 KOG4441 Proteins containing BT 94.6 2.2 4.9E-05 52.6 20.4 191 61-283 283-504 (571)
425 PLN03081 pentatricopeptide (PP 94.5 0.49 1.1E-05 60.7 15.3 129 641-769 368-520 (697)
426 PF11725 AvrE: Pathogenicity f 94.5 6.4 0.00014 52.3 24.3 414 50-510 361-815 (1774)
427 PF07995 GSDH: Glucose / Sorbo 94.5 11 0.00025 43.1 26.0 249 54-312 4-327 (331)
428 PF12894 Apc4_WD40: Anaphase-p 94.5 0.1 2.2E-06 40.3 5.4 34 9-43 11-44 (47)
429 PF05694 SBP56: 56kDa selenium 94.5 8 0.00017 44.8 22.5 152 18-169 138-346 (461)
430 TIGR03074 PQQ_membr_DH membran 94.3 21 0.00047 45.5 34.9 150 21-171 260-483 (764)
431 PF05096 Glu_cyclase_2: Glutam 94.3 9.7 0.00021 41.4 23.7 124 42-170 34-162 (264)
432 PHA02713 hypothetical protein; 94.2 0.98 2.1E-05 55.9 16.3 188 20-238 303-537 (557)
433 PRK13684 Ycf48-like protein; P 94.1 14 0.0003 42.6 29.3 145 367-517 174-329 (334)
434 PRK11788 tetratricopeptide rep 94.1 0.62 1.3E-05 55.0 14.1 154 616-769 113-308 (389)
435 KOG1898 Splicing factor 3b, su 94.1 23 0.0005 45.0 35.9 181 271-479 854-1047(1205)
436 PRK10049 pgaA outer membrane p 94.1 20 0.00044 46.4 28.7 111 994-1129 360-470 (765)
437 PF12894 Apc4_WD40: Anaphase-p 94.0 0.12 2.6E-06 39.9 5.0 35 50-85 10-44 (47)
438 KOG2444 WD40 repeat protein [G 94.0 0.16 3.4E-06 52.7 7.2 104 63-166 70-178 (238)
439 PHA03098 kelch-like protein; P 93.9 2.5 5.3E-05 52.4 19.4 145 20-168 294-467 (534)
440 PF13429 TPR_15: Tetratricopep 93.7 0.24 5.2E-06 55.6 9.0 130 615-745 83-242 (280)
441 KOG3630 Nuclear pore complex, 93.7 0.5 1.1E-05 59.3 11.9 154 13-166 45-229 (1405)
442 TIGR00990 3a0801s09 mitochondr 93.7 1.3 2.9E-05 55.8 16.6 153 616-768 337-533 (615)
443 PF07569 Hira: TUP1-like enhan 93.6 0.99 2.2E-05 48.2 12.9 48 491-538 67-115 (219)
444 PLN03077 Protein ECB2; Provisi 93.6 0.75 1.6E-05 60.6 14.7 130 641-770 331-482 (857)
445 KOG4499 Ca2+-binding protein R 93.6 11 0.00024 39.5 20.7 94 208-301 161-264 (310)
446 PF10168 Nup88: Nuclear pore c 93.4 17 0.00037 45.9 25.2 75 205-280 85-181 (717)
447 PF14761 HPS3_N: Hermansky-Pud 93.4 6.9 0.00015 40.9 17.8 169 324-517 22-212 (215)
448 KOG3630 Nuclear pore complex, 93.2 0.61 1.3E-05 58.5 11.6 145 95-266 102-261 (1405)
449 COG3063 PilF Tfp pilus assembl 93.1 0.34 7.3E-06 50.5 7.9 158 599-769 58-233 (250)
450 PF14727 PHTB1_N: PTHB1 N-term 93.1 23 0.00049 41.7 31.3 144 20-166 36-205 (418)
451 PLN03077 Protein ECB2; Provisi 93.0 1 2.3E-05 59.3 14.7 130 641-770 432-581 (857)
452 PHA03098 kelch-like protein; P 93.0 2.9 6.4E-05 51.7 17.8 104 61-168 293-417 (534)
453 PRK11447 cellulose synthase su 92.8 2 4.3E-05 58.5 17.1 127 643-769 583-737 (1157)
454 KOG2280 Vacuolar assembly/sort 92.4 8 0.00017 47.2 18.9 473 270-766 64-608 (829)
455 PF12234 Rav1p_C: RAVE protein 92.4 2.1 4.6E-05 52.3 14.7 116 5-122 25-155 (631)
456 TIGR02521 type_IV_pilW type IV 92.1 2.7 5.8E-05 44.8 14.1 127 643-769 41-195 (234)
457 PF04840 Vps16_C: Vps16, C-ter 92.0 3 6.5E-05 47.3 14.5 117 641-772 185-304 (319)
458 KOG4499 Ca2+-binding protein R 92.0 18 0.0004 38.0 19.9 213 23-258 29-263 (310)
459 TIGR02917 PEP_TPR_lipo putativ 91.8 2.7 5.9E-05 55.4 16.7 69 643-711 577-658 (899)
460 TIGR02604 Piru_Ver_Nterm putat 91.8 4.7 0.0001 47.1 16.5 141 10-154 14-202 (367)
461 TIGR02917 PEP_TPR_lipo putativ 91.8 2.5 5.3E-05 55.8 16.2 172 599-770 488-696 (899)
462 PRK12370 invasion protein regu 91.8 2 4.4E-05 53.3 14.2 124 647-770 318-468 (553)
463 COG3292 Predicted periplasmic 91.7 34 0.00075 40.7 24.2 267 9-314 164-441 (671)
464 KOG1916 Nuclear protein, conta 91.6 0.13 2.9E-06 62.3 3.4 114 48-164 129-264 (1283)
465 PRK15174 Vi polysaccharide exp 91.5 3.7 8E-05 52.1 16.3 150 620-769 52-238 (656)
466 KOG2377 Uncharacterized conser 91.5 2.5 5.5E-05 48.1 12.7 139 369-510 26-173 (657)
467 PF10168 Nup88: Nuclear pore c 91.4 19 0.00041 45.6 21.8 25 53-77 86-110 (717)
468 COG5010 TadD Flp pilus assembl 90.8 2.2 4.8E-05 45.5 11.0 77 641-717 108-197 (257)
469 PF12895 Apc3: Anaphase-promot 90.4 1.3 2.7E-05 39.3 7.8 75 646-742 2-83 (84)
470 PF13429 TPR_15: Tetratricopep 90.2 0.31 6.8E-06 54.6 4.5 127 642-769 17-172 (280)
471 PF14761 HPS3_N: Hermansky-Pud 90.0 11 0.00025 39.3 15.1 103 217-320 29-164 (215)
472 TIGR02604 Piru_Ver_Nterm putat 90.0 12 0.00025 43.9 17.5 149 94-266 14-201 (367)
473 PHA02790 Kelch-like protein; P 89.8 12 0.00026 45.6 18.0 184 61-280 270-472 (480)
474 PRK15359 type III secretion sy 89.8 2 4.3E-05 42.7 9.4 80 643-743 34-118 (144)
475 COG5276 Uncharacterized conser 89.7 35 0.00075 37.3 30.5 193 53-279 88-286 (370)
476 PRK10370 formate-dependent nit 89.7 1.8 3.9E-05 45.6 9.5 84 660-743 71-170 (198)
477 KOG2377 Uncharacterized conser 89.6 39 0.00084 39.0 19.7 139 13-154 26-172 (657)
478 PF10395 Utp8: Utp8 family; I 89.6 62 0.0013 40.0 24.0 65 423-489 242-314 (670)
479 PHA02790 Kelch-like protein; P 88.7 16 0.00035 44.3 18.1 140 20-168 271-426 (480)
480 PRK09782 bacteriophage N4 rece 88.4 4.7 0.0001 53.0 13.8 125 619-743 551-703 (987)
481 PF08728 CRT10: CRT10; InterP 88.4 7.2 0.00016 48.3 14.3 124 146-277 113-245 (717)
482 COG5167 VID27 Protein involved 88.3 5.5 0.00012 46.1 12.2 156 7-166 464-633 (776)
483 PF14853 Fis1_TPR_C: Fis1 C-te 87.8 0.91 2E-05 36.1 4.3 34 1095-1129 11-44 (53)
484 PF10602 RPN7: 26S proteasome 87.7 3.7 7.9E-05 42.3 9.9 96 649-744 19-140 (177)
485 PRK12370 invasion protein regu 87.6 7.3 0.00016 48.3 14.5 127 642-768 347-498 (553)
486 KOG4460 Nuclear pore complex, 87.6 29 0.00063 40.7 17.3 98 54-173 106-206 (741)
487 KOG1983 Tomosyn and related SN 87.6 33 0.00073 45.3 20.7 108 10-123 36-144 (993)
488 COG4257 Vgb Streptogramin lyas 87.5 46 0.001 36.0 21.3 236 206-482 63-307 (353)
489 PF08728 CRT10: CRT10; InterP 87.3 16 0.00035 45.4 16.4 142 21-164 49-245 (717)
490 PRK11447 cellulose synthase su 87.0 5.7 0.00012 54.2 14.0 128 616-743 579-737 (1157)
491 PF11725 AvrE: Pathogenicity f 87.0 58 0.0013 43.9 21.6 151 7-168 360-519 (1774)
492 COG4590 ABC-type uncharacteriz 86.8 2.6 5.6E-05 47.8 8.5 196 128-346 213-416 (733)
493 PF14781 BBS2_N: Ciliary BBSom 86.6 20 0.00043 34.6 13.1 116 13-132 2-134 (136)
494 PRK15174 Vi polysaccharide exp 86.4 11 0.00023 47.9 15.1 14 673-686 223-236 (656)
495 PF13414 TPR_11: TPR repeat; P 86.3 2.5 5.5E-05 35.5 6.7 62 661-743 2-64 (69)
496 PRK13614 lipoprotein LpqB; Pro 86.0 75 0.0016 39.2 21.1 177 292-473 344-550 (573)
497 PF10313 DUF2415: Uncharacteri 85.8 2.8 6E-05 31.6 5.5 31 10-40 1-34 (43)
498 PF13432 TPR_16: Tetratricopep 85.8 1.7 3.7E-05 36.1 5.3 47 642-688 6-57 (65)
499 KOG1916 Nuclear protein, conta 85.5 0.91 2E-05 55.5 4.6 118 10-128 181-328 (1283)
500 COG4257 Vgb Streptogramin lyas 85.4 60 0.0013 35.2 20.5 232 11-279 63-306 (353)
No 1
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-251 Score=2087.12 Aligned_cols=1184 Identities=67% Similarity=1.105 Sum_probs=1112.4
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
|+++|+..+++|++++|||..+|++++.++|.|++||++++.++.+|.+|++||++++|||++++|+|||+|..|+||++
T Consensus 1 mltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred CcchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
++.+|++++.||.++|+.+.||+..+||+|+|+|++|+||||++++++.+++||+++|+|.+|+|..+.++++|.|.+||
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCccccccCCC--cceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 161 VWDIGALRKKTVSPAD--DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|||+++.+++...|++ ..+...+.+..++|+.|.+++++++||+++|++++|+|.-++|++|++|+.|++|+++..+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 9999999999888772 34444556678999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 239 ~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l 318 (1208)
|++.++++|.++|+++.|||..++|++.|+|++|+|||+.+++.+++|+..++++|.++.+|..+++|+|+|+|++||++
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 319 ~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
++++|++.++++.|+|++++.|+.+|+.+.+...+.+++..+. ++.++++++|+|..+.+++++..+++.+.++.++.
T Consensus 321 eRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~--~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 321 ERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGT--LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred cccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCc--ccCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 9999999999999999999999999999999999999998775 37799999999999999999988999999999998
Q ss_pred CCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEEEEeCCeEEEEE
Q 000961 399 DSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFD 478 (1208)
Q Consensus 399 ~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las~dg~v~lwd 478 (1208)
...+... .....+++...+.|..+++|++...++.++.+.++.++..+++..+..+..|++..+|.+|+..+..|.+||
T Consensus 399 ~~~~~~~-~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~~~~v~lfd 477 (1202)
T KOG0292|consen 399 DSDGVSD-GKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRSPDSVTLFD 477 (1202)
T ss_pred cccccCC-chhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEEcCCeEEEEE
Confidence 8665543 245566778889999999999999999999999999999999998888999999999999999999999999
Q ss_pred cCCCeEEEEEeCCCeeEEEECCCCCEEEEEeCCeEEEEecCccceeeeecceeeeeeEEecCCeEEEecCCeeeeEecCC
Q 000961 479 LQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNG 558 (1208)
Q Consensus 479 l~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~~~~~~~~~~~~e~~~iks~~wd~~~~~iy~t~~~i~y~l~~g 558 (1208)
+++++.+.++..+.|++|.||+|++++|..++|.|+|++++++.++++||+++|||++||++++|||+|+|||||++.||
T Consensus 478 vQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihEtiriksgawde~gVfiYtT~nHikYal~~G 557 (1202)
T KOG0292|consen 478 VQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKYALENG 557 (1202)
T ss_pred eecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchhheecchheeEeeeceeccCceEEEEehhhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEcChhh-----------HHHHHhhcccccccchHHHHHHHhCCChh
Q 000961 559 DSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATE-----------YDHVMSMIRNSQLCGQAMIAYLQQKGFPE 627 (1208)
Q Consensus 559 ~~g~i~~l~~~~~l~~~~~~~l~~l~r~~~~~~~~ld~~e-----------~~~~l~~i~~~~~~~~~i~~yl~~~g~~e 627 (1208)
|.|+|++++.++|+++++++.+||++|+++++.+.||++| |++++++|++++++||+|++||+|+||||
T Consensus 558 D~GIikTLd~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaYLqKkgype 637 (1202)
T KOG0292|consen 558 DSGIIKTLDKPIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAYLQKKGYPE 637 (1202)
T ss_pred CcceEEecccceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999 78999999999999999999999999999
Q ss_pred hhhccccCcchhhHHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHH
Q 000961 628 VALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKL 707 (1208)
Q Consensus 628 ~Al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl 707 (1208)
+||+|++|+++||+||++|||+++|++.|++++++.+|++||+.||.|||+++||+|||++++|++|+|||+++||.+||
T Consensus 638 iAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 638 IALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCCCCCCCC-CCCCcCC
Q 000961 708 SKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVPEG-KAPSLLM 786 (1208)
Q Consensus 708 ~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~~~~~~~-~~~~~~~ 786 (1208)
+||++|++.|+|....+++++|+||++++++++.++|+.++||.+|++||+.+.|+++.++++.++..+|+. +++.+++
T Consensus 718 ~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~~~~~~~lP~~~~~a~ll~ 797 (1202)
T KOG0292|consen 718 SKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEELEKQVPSLPEVDPNASLLQ 797 (1202)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhhccccCCCCCCCCcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999877779987 7888999
Q ss_pred CCCcccCCCCCCcccccccccccccccCCCCCcccccccccCCCcc---ccccccccCCCCCcchhhcccCccccccccc
Q 000961 787 PPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGAVDEEEEAVEGDWGE---ELDMVDVDGLQNGDVAAILEDGEVAEEGEEE 863 (1208)
Q Consensus 787 ~~~~~~~~~~wp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1208)
||+|++...|||++.+++++|++++.+.+... .++.+.++.|++ +.+..+. ++... .++..++.++||
T Consensus 798 pP~p~~~l~nwPLl~~s~~~fe~~~~~~~~~~--av~~~~e~~~g~e~~~~e~~l~--ed~~~-----~~d~~g~~~~dE 868 (1202)
T KOG0292|consen 798 PPVPIMPLENWPLLSVSKGTFEGALLSRSSSL--AVDRDDEGDWGEEGWDVELMLG--EDGIL-----FNDGAGEVGEDE 868 (1202)
T ss_pred CCCccccccCCchhhhhhhhhhHhhhhhcccC--cccccccccccccchhhhhccc--ccccc-----ccccccccCccc
Confidence 99999888899999999999999998443322 233222222332 1111111 11111 111122234677
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCchhHHHHhcchHHHHHHcCCHHHHHHHHHhhcCcccccccHHH
Q 000961 864 EGGWDLEDLELPPEAETPKAPVNARSAVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSM 943 (1208)
Q Consensus 864 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f~~a~~~l~~~~~~~~~~p~~~~ 943 (1208)
++|||++|++++++++.++ ..+.+.|++|..|.+.+ .|.+||++||||||||+|++||++|++|+|++||.|||.+
T Consensus 869 ~~gWdv~d~~l~pe~~~~~---~~~~~~~~~p~~~~~~~-~W~~nS~L~adhvaAGsf~tA~~lL~dqvgvv~f~p~Kt~ 944 (1202)
T KOG0292|consen 869 GGGWDVGDLDLPPEEDTPK---GADDGEFVVPAQGMSVS-IWSNNSPLAADHVAAGSFETAMRLLHDQVGVVNFGPLKTH 944 (1202)
T ss_pred ccCcCcccccCCccccccc---cccccceecCCCCCcch-hccccCcchhhhhhcCchHHHHHHHHhhhcceecccHHhh
Confidence 8899999888887765554 33457789999997777 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcceeeeccCCCCCChhhhhhcCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHc
Q 000961 944 FLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTI 1023 (1208)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1023 (1208)
|+++|.+||+|+|+.|++| +.+++-|+|.|.+..+ .+|+++.++++|..+|++||++||.|||.+|+++||+||++|
T Consensus 945 fl~iy~~sR~~l~~~~~~~-~~~~~~R~~se~~~~~--~~P~v~~~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i 1021 (1202)
T KOG0292|consen 945 FLKIYAGSRTYLRATPCLP-VSLYPVRNWSETSSKQ--GLPAVGFKLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSI 1021 (1202)
T ss_pred hhhhccccceeccCCCCcc-cccccccccccchhhc--cCCcccccHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhhe
Confidence 9999999999999999999 7777788888887644 899999999999999999999999999999999999999999
Q ss_pred ceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCc-hhhhHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchH
Q 000961 1024 PLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDP-VRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLA 1102 (1208)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~-~r~~el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~ 1102 (1208)
|+++|++++|+++++++|+||||||+||+||++||+|+++. +|+||||||||||+|||.|++||||+||+++||+|||+
T Consensus 1022 ~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~k 1101 (1202)
T KOG0292|consen 1022 PLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLK 1101 (1202)
T ss_pred eEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchhHHHHHHHHHHHHhcCCCCceeecCCCCCCeeEeccccccccCCCccccCCCCCcccCCCCCC
Q 000961 1103 TAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEG 1182 (1208)
Q Consensus 1103 ~a~~~a~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~i~~~~~~~~c~~~~~~~~~~~~~ 1182 (1208)
||++||+|||++.|. +++|+|||||+++||++|+|+++|+|||+|||+||++||+|||+|.|.++||||||+|++.++|
T Consensus 1102 tAs~fa~rLlel~~~-~~~A~q~rki~~a~eknp~Da~~l~yd~~n~f~iC~~t~~Piy~g~p~~~cp~cga~y~~~~~g 1180 (1202)
T KOG0292|consen 1102 TAAEFARRLLELAPS-PPVAEQARKIKQAAEKNPTDAYELNYDPHNPFVICGATYVPIYRGRPDVSCPYCGACFVPSSKG 1180 (1202)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHHHHHhhcCcccccccCcccCCCeeEecccceeeecCCCCcCCCcccceeccccCC
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCcccccccCCCCcCccccC
Q 000961 1183 QLCSVCDLAVVGVDASGLLCSP 1204 (1208)
Q Consensus 1183 ~~c~~~~~~~~g~~~~g~~~~~ 1204 (1208)
++|+||.+++||++++||||++
T Consensus 1181 ~iCtvc~V~~ig~~~~Glris~ 1202 (1202)
T KOG0292|consen 1181 NICTVCDVGVIGADASGLRISA 1202 (1202)
T ss_pred ceeeeeeeeeecCcccceeecC
Confidence 9999999999999999999975
No 2
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=100.00 E-value=2.2e-119 Score=1001.47 Aligned_cols=346 Identities=58% Similarity=0.968 Sum_probs=255.3
Q ss_pred cccccCCCCCC-CCCCCCCCCCCC-CCccccccccccCCCCCCchhHHHHhcchHHHHHHcCCHHHHHHHHHhhcCcccc
Q 000961 860 GEEEEGGWDLE-DLELPPEAETPK-APVNARSAVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNF 937 (1208)
Q Consensus 860 ~~~~~~~w~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f~~a~~~l~~~~~~~~~ 937 (1208)
++||++||||| ||++|+|++.+. .....+.+.|++|++|.++.+.|++||++||||||||+||+||+|||||||||||
T Consensus 71 ~~~e~~gWD~ddDl~lp~e~d~~~~~~~~~~~~~~v~p~~g~~~~~~W~~nS~laadhvAAGsFetAm~LLnrQiGivnF 150 (422)
T PF06957_consen 71 DEDEEGGWDLDDDLDLPEELDVPDGVAGSAEDGYFVAPTPGSSESQIWVRNSSLAADHVAAGSFETAMQLLNRQIGIVNF 150 (422)
T ss_dssp ------------------------------------------HHHHHHHHH--SHHHHHHCT-HHHHHHHHHHHC-B---
T ss_pred ccccccccccccccCCCcccccccccccccccccccCCCCCCCHHHHHHHcCCcHHHHHHhCCHHHHHHHHHHHhCcccc
Confidence 35677799998 899998775554 2223356779999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhcceeeeccCCCCCChhhhhhcCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHhcccCCHHHHHHHHH
Q 000961 938 APLKSMFLDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFL 1017 (1208)
Q Consensus 938 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 1017 (1208)
+|||++|+++|.+|++|+|++|++|||..|++|||.+...++ .+|+++.++++|.++||.|||+||+|||+||++.||
T Consensus 151 ~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~--~lP~i~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr 228 (422)
T PF06957_consen 151 EPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKN--GLPAIPLSLSSLEERLKEGYKLFTAGKFEEAIEIFR 228 (422)
T ss_dssp GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCC--G-BB----HHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhceecccCCCCCCccccccCCcccccccc--CCCcCcCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999988776555 799999999999999999999999999999999999
Q ss_pred HHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC---c-hhhhHHHHHhcccCCChhhHHHHHHHHHH
Q 000961 1018 SILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDD---P-VRQQELAAYFTHCNLQMPHLRLALLNAMS 1093 (1208)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~---~-~r~~el~~yft~~~l~~~h~~l~l~~a~~ 1093 (1208)
+|||+|||++|++++|+++++++|+||||||+||+||++||+|+++ + ||+||||||||||+|||.|++||||+||+
T Consensus 229 ~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~ 308 (422)
T PF06957_consen 229 SILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMS 308 (422)
T ss_dssp HHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHH
T ss_pred HHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876 3 89999999999999999999999999999
Q ss_pred HHHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHHHHHhcCCCCceeecCCCCCCeeEeccccccccCCCccccCCCCC
Q 000961 1094 VCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCT 1173 (1208)
Q Consensus 1094 ~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~i~~~~~~~~c~~~~ 1173 (1208)
++||+|||+||++||||||+++|+ +++++|||||+++|||+|+|+|+||||++|||+||++||||||||++.|+|||||
T Consensus 309 ~~~K~KNf~tAa~FArRLLel~p~-~~~a~qArKil~~~e~~~tDa~~i~yD~~npF~ICa~s~tPIY~G~~~v~CP~cg 387 (422)
T PF06957_consen 309 QAFKLKNFITAASFARRLLELNPS-PEVAEQARKILQACERNPTDAHEIDYDERNPFDICAASYTPIYRGSPSVKCPYCG 387 (422)
T ss_dssp HCCCTTBHHHHHHHHHHHHCT--S-CHHHHHHHHHHHHHCCS--BSS--S--TTS-EEEBTTT--EEETTS-EEE-TTT-
T ss_pred HHHHhccHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCceecCCCCCCCceeeecccccccCCCCCeeCCCCC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccCcccccccCCCCcCccccCCCCC
Q 000961 1174 TRFVPSQEGQLCSVCDLAVVGVDASGLLCSPTQIR 1208 (1208)
Q Consensus 1174 ~~~~~~~~~~~c~~~~~~~~g~~~~g~~~~~~~~~ 1208 (1208)
|+|+|+|||++|+||+|++||++++||||+++|||
T Consensus 388 A~y~~~~kG~lC~vC~l~~IG~~a~GLris~~q~r 422 (422)
T PF06957_consen 388 AKYHPEYKGQLCPVCELSEIGADASGLRISPSQFR 422 (422)
T ss_dssp -EEEGGGTTSB-TTTTTBBTT---S----SGGG--
T ss_pred CccChhhCCCCCCCCcceeeCCcceeeEecccccC
Confidence 99999999999999999999999999999999998
No 3
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-80 Score=681.69 Aligned_cols=705 Identities=31% Similarity=0.561 Sum_probs=617.6
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
++|..|+.+|+++.|||..+|++++..+|.|+|||+++..+++.|.-.+-||++..|-+..+++++|++|..|+||++.+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVR 160 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~ 160 (1208)
++.+.++..|+++|++++.||..++++++|+|-+|++|||+. ..+.+++.||.+.|++++|+|.+ +.+++++.|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 999999999999999999999999999999999999999985 57889999999999999999965 8999999999999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCce
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
||.+.+.. ..+++++|..+|+|+.|-+.| ++|++|++|.+|++||..+..+
T Consensus 167 VWslgs~~---------------------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 167 VWSLGSPH---------------------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred EEEcCCCC---------------------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 99997633 345889999999999998854 7999999999999999999998
Q ss_pred eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 239 ~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l 318 (1208)
+.++.||.++|+.+.|||.-..|++||+||++|+|+..+.+...++....+++|+++..+.++.+++|.|.|.+..++
T Consensus 220 --V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 220 --VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred --HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 999999999999999999999999999999999999999888888888889999999999999999999999999999
Q ss_pred CCCcceEEecCCE-EEEEeCCeEEEEEccC---------CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCC
Q 000961 319 ERERPAFAVSGDS-LFYAKDRFLRYYEFST---------QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG 388 (1208)
Q Consensus 319 ~~~~~~~s~~~~~-L~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~ 388 (1208)
.++.|+.+++.+. ++.+..+.+.--++.+ |+.++ ++.+..|. . ...+..++.||+|+.+++|++
T Consensus 298 greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~-LsvKeLgs-~-eiyPq~L~hsPNGrfV~Vcgd--- 371 (794)
T KOG0276|consen 298 GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLP-LSVKELGS-V-EIYPQTLAHSPNGRFVVVCGD--- 371 (794)
T ss_pred cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCcccc-chhhhccc-c-ccchHHhccCCCCcEEEEecC---
Confidence 9999999998764 7766666666555544 33322 33444444 3 447788999999999998877
Q ss_pred CEEEEEEccCCCCCCCcccccccCCceEEEEEEeC-CcEEEEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEE
Q 000961 389 GSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIAR-NRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLL 467 (1208)
Q Consensus 389 g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d-~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~L 467 (1208)
|.+.||..-. ......+.....+|++| +.+.+-.+ ++.|.++ -+.+..+++........+ | .|.+|
T Consensus 372 GEyiIyTala--------~RnK~fG~~~eFvw~~dsne~avRes-~~~vki~-knfke~ksi~~~~~~e~i-~--gg~Ll 438 (794)
T KOG0276|consen 372 GEYIIYTALA--------LRNKAFGSGLEFVWAADSNEFAVRES-NGNVKIF-KNFKEHKSIRPDMSAEGI-F--GGPLL 438 (794)
T ss_pred ccEEEEEeee--------hhhcccccceeEEEcCCCCeEEEEec-CCceEEE-ecceeccccccccceeee-c--CCceE
Confidence 8999998443 23456778889999999 66666666 7778887 335566666655432222 2 24566
Q ss_pred -EEeCCeEEEEEcCCCeEEEEEeCCCeeEEEECCCCCEEEEEeCCeEEEEecCccceeee-------------------e
Q 000961 468 -CRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTL-------------------H 527 (1208)
Q Consensus 468 -as~dg~v~lwdl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~~~~~~~~~~~-------------------~ 527 (1208)
+.+++.+++||+++++++..+.. ..+.+.|+.+|..+++++++.+||+..+.+.+... .
T Consensus 439 g~~ss~~~~fydW~~~~lVrrI~v-~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLg 517 (794)
T KOG0276|consen 439 GVRSSDFLCFYDWESGELVRRIEV-TSKHVYWSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLG 517 (794)
T ss_pred EEEeCCeEEEEEcccceEEEEEee-ccceeEEecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHh
Confidence 44789999999999999999998 57899999999999999999999887664333211 1
Q ss_pred c-ceeeeeeEEecCCeEEEecC-CeeeeEecCCceeEEEeccccEEEEEE--eCCEEEEEecCCceEEEEcC--hhhHH-
Q 000961 528 E-TIRVKSGAWDDNGVFIYTTL-NHIKYCLPNGDSGIIRTLDVPIYITKV--SGNTIFCLDRDGKNRAIVID--ATEYD- 600 (1208)
Q Consensus 528 e-~~~iks~~wd~~~~~iy~t~-~~i~y~l~~g~~g~i~~l~~~~~l~~~--~~~~l~~l~r~~~~~~~~ld--~~e~~- 600 (1208)
| ++.++.+.|.. ++|||+|. |.+.|+ +.|+.-.+.+++.++|+++. +++++|+.|++..+..+.++ ..||+
T Consensus 518 E~sE~v~tg~Wvg-D~fiytts~nrlnY~-vgGe~~~v~h~~~~mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt 595 (794)
T KOG0276|consen 518 EVSESVKTGKWVG-DCFIYTTSNNRLNYL-VGGETYTVAHLDRIMYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQT 595 (794)
T ss_pred hhhhheeeceeee-eEEEEeecccceeEE-cCCceEEEEEeccchhheeeeecCCEEEEeecccceEeEeeehHHHHHHH
Confidence 1 55889999975 89999988 777776 79999999999999999986 79999999999999887775 44543
Q ss_pred -----------HHHhhcccccccchHHHHHHHhCCChhhhhccccCcchhhHHHHhcCCHHHHHHHHHHhCChhHHHHHH
Q 000961 601 -----------HVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLG 669 (1208)
Q Consensus 601 -----------~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~La 669 (1208)
.++..|+... ...++.||++.||.|.||++..||..||++|++.|+++.|.++|.+.+++.-|++||
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~~--rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg 673 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKEI--RTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLG 673 (794)
T ss_pred HhhhccccccccccccCchhh--hhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHH
Confidence 3445554333 378999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHH
Q 000961 670 VEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLA 749 (1208)
Q Consensus 670 ~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A 749 (1208)
+.|+..|++..|.+||.+.+|+..|..||...||-+-+.++++.++..|..+.+|.++..+|+++++.+++++.+|+++|
T Consensus 674 ~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 674 DAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred HHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChH
Q 000961 750 YITASVHGLQD 760 (1208)
Q Consensus 750 ~~~a~~~g~~~ 760 (1208)
..+|+++...+
T Consensus 754 al~ArtYlps~ 764 (794)
T KOG0276|consen 754 ALFARTYLPSQ 764 (794)
T ss_pred HHHHhhhChHH
Confidence 99999999854
No 4
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=1.3e-56 Score=517.34 Aligned_cols=402 Identities=41% Similarity=0.681 Sum_probs=312.4
Q ss_pred CeEEEEEccCC-----cceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccC
Q 000961 338 RFLRYYEFSTQ-----KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKK 412 (1208)
Q Consensus 338 ~~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~ 412 (1208)
+.|+.+|+.+. .....++.+..|. . +..+++++++|+|+.++|+++ |.+.||.... ......
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~-~-~~~p~~ls~npngr~v~V~g~---geY~iyt~~~--------~r~k~~ 68 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKELGS-C-EIYPQSLSHNPNGRFVLVCGD---GEYEIYTALA--------WRNKAF 68 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EEEEE---SS--SEEEE-TTSSEEEEEET---TEEEEEETTT--------TEEEEE
T ss_pred CceEEEECcCCCccCCCceeeEEeccCCC-C-CcCCeeEEECCCCCEEEEEcC---CEEEEEEccC--------Cccccc
Confidence 35666666654 2333344444443 2 447899999999999999766 8999999332 234556
Q ss_pred CceEEEEEEeCCcEEEEEcCCCEEEE-EecCCceeeeecCCcceEEEEEeCCccEEEE-eCCeEEEEEcCCCeEEEEEeC
Q 000961 413 GLGGSAIFIARNRFAVLDKSSNQVLV-KNLKNEVVKKSILPIAADAIFYAGTGNLLCR-AEDRVVIFDLQQRLVLGDLQT 490 (1208)
Q Consensus 413 ~~i~~~~fs~d~~~l~~~~~dg~I~I-wdl~~~~~~~l~~~~~v~~i~~s~dg~~Las-~dg~v~lwdl~~~~~l~~~~~ 490 (1208)
+....++|+++++|++..+ +++|.| .++++...++++.+..+..|+. |.+|.. +++.|.+||+++++.+.++..
T Consensus 69 G~g~~~vw~~~n~yAv~~~-~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 69 GSGLSFVWSSRNRYAVLES-SSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDV 144 (443)
T ss_dssp EE-SEEEE-TSSEEEEE-T-TS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS
T ss_pred CceeEEEEecCccEEEEEC-CCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEec
Confidence 7888999999999999988 788999 5777777677877777888887 777755 577899999999999999999
Q ss_pred CCeeEEEECCCCCEEEEEeCCeEEEEecCcc------------ceeeeec-ceeeeeeEEecCCeEEEecCCeeeeEecC
Q 000961 491 PFVKYVVWSNDMESVALLSKHAIIIASKKLV------------HQCTLHE-TIRVKSGAWDDNGVFIYTTLNHIKYCLPN 557 (1208)
Q Consensus 491 ~~v~~v~ws~dg~~la~~s~~~i~i~~~~~~------------~~~~~~e-~~~iks~~wd~~~~~iy~t~~~i~y~l~~ 557 (1208)
.+|+.|.||++|+++|+.+++.++|++.+++ .++.++| +.+|||++|+++ +|+|+|.+|++| +++
T Consensus 145 ~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~~lkY-l~~ 222 (443)
T PF04053_consen 145 SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSNHLKY-LVN 222 (443)
T ss_dssp -E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TTEEEE-EET
T ss_pred CCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCCeEEE-EEc
Confidence 7799999999999999999999999999999 9999999 999999999865 999999999999 789
Q ss_pred CceeEEEeccccEEEEEEeC--CEEEEEecCCceEEEEcChhh-----------HHHHHhhccccccc-------chHHH
Q 000961 558 GDSGIIRTLDVPIYITKVSG--NTIFCLDRDGKNRAIVIDATE-----------YDHVMSMIRNSQLC-------GQAMI 617 (1208)
Q Consensus 558 g~~g~i~~l~~~~~l~~~~~--~~l~~l~r~~~~~~~~ld~~e-----------~~~~l~~i~~~~~~-------~~~i~ 617 (1208)
|+.|+|++++.++|++++.+ +++|++||++++..+.||++| +++++++++.+.++ |++++
T Consensus 223 Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~ 302 (443)
T PF04053_consen 223 GETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIA 302 (443)
T ss_dssp TEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHH
T ss_pred CCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHH
Confidence 99999999999999999987 999999999999999999999 66888888878888 99999
Q ss_pred HHHHhCCChhhhhccccCcchhhHHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHH
Q 000961 618 AYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFL 697 (1208)
Q Consensus 618 ~yl~~~g~~e~Al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l 697 (1208)
+||+++||+|+||++++||++||+||+++||++.|+++|++++++..|++||+.||.+||+++||+||++++|+++|++|
T Consensus 303 ~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lL 382 (443)
T PF04053_consen 303 RFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLL 382 (443)
T ss_dssp HHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCC
Q 000961 698 YLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGL 758 (1208)
Q Consensus 698 ~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~ 758 (1208)
|.++||.++|++|+++++.+|+.+.+|++++++||+++++++|.++|++++|+.+|++||+
T Consensus 383 y~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 383 YSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-46 Score=390.36 Aligned_cols=329 Identities=26% Similarity=0.408 Sum_probs=293.9
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
..+.||.+.|.|++|+|+|..|++|+.|.++++||+.+...+.+.++|...|.|++|+|||+.||+|+.||+|++||.++
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEE-EEEccCCCCEEEEEEcC-----CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC
Q 000961 83 HRCL-FTLLGHLDYIRTVQFHH-----EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD 156 (1208)
Q Consensus 83 ~~~~-~~l~~h~~~I~~v~fs~-----d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D 156 (1208)
|+++ ..+.+|...|++++|.| ...+|++++.||+|+|||+..++++..+.+|+.+|+|+.|--+ .+|++||.|
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~D 267 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQD 267 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCC
Confidence 8766 57899999999999986 4569999999999999999999999999999999999999755 599999999
Q ss_pred CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEc-----------CCCC--------
Q 000961 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH-----------PTLP-------- 217 (1208)
Q Consensus 157 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-----------p~g~-------- 217 (1208)
++|++|+...+... ..+.+|...|+.++.+ |.++
T Consensus 268 rtIkvw~a~dG~~~---------------------------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 268 RTIKVWRALDGKLC---------------------------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred ceEEEEEccchhHH---------------------------HhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 99999998765433 2677888888887766 3333
Q ss_pred -----------------EEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 218 -----------------LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 218 -----------------~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
.+++|++|.++.+|+....+. ++..+.+|..-|..+.||||+++|+++|.|++|++||..+|
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence 599999999999999876653 37788999999999999999999999999999999999999
Q ss_pred eeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCC
Q 000961 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1208)
Q Consensus 281 ~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1208)
+.+.+|++|-..|+.++|+.|.+++++|+ +|.++++|++.+.+.. ..-+|
T Consensus 400 k~lasfRGHv~~VYqvawsaDsRLlVS~S--------------------------kDsTLKvw~V~tkKl~----~DLpG 449 (480)
T KOG0271|consen 400 KFLASFRGHVAAVYQVAWSADSRLLVSGS--------------------------KDSTLKVWDVRTKKLK----QDLPG 449 (480)
T ss_pred chhhhhhhccceeEEEEeccCccEEEEcC--------------------------CCceEEEEEeeeeeec----ccCCC
Confidence 99999999999999999999999999998 5889999999986653 23345
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
|.+ .|.++.|+|||..+ +++..|..+++|.
T Consensus 450 h~D---EVf~vDwspDG~rV--~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HAD---EVFAVDWSPDGQRV--ASGGKDKVLRLWR 479 (480)
T ss_pred CCc---eEEEEEecCCCcee--ecCCCceEEEeec
Confidence 534 99999999999955 6676788999885
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-41 Score=367.48 Aligned_cols=479 Identities=16% Similarity=0.276 Sum_probs=382.1
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--EEEEecccccCEEEEEEEcCCCEEEEEEC--CCeEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGD--DYKIKVW 78 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~--Dg~I~vW 78 (1208)
..+..|+..++-..|||.|-|+|+|...|.|+|||....+ +..+++...++|..++|++++++++..|+ ++..+++
T Consensus 53 ~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F 132 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVF 132 (603)
T ss_pred eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEE
Confidence 4678999999999999999999999999999999975532 33567788999999999999999888764 3334444
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCC
Q 000961 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
-+++|..+..+.||+..|.++.|-|..+ ++++|++|++|.+|+-.--+...++..|...|.|+.|+|||.++++++.||
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg 212 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG 212 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence 4447888999999999999999999888 799999999999999777777788889999999999999999999999999
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
+|.+||-.++++..... .-.+|.+.|.+++|+||+..+++++.|.+++|||..+.+
T Consensus 213 ki~iyDGktge~vg~l~------------------------~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELE------------------------DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred cEEEEcCCCccEEEEec------------------------CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 99999988866543211 134899999999999999999999999999999998754
Q ss_pred eeE-----------------------------------------EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000961 238 AWE-----------------------------------------VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 238 ~~~-----------------------------------------~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd 276 (1208)
... ...+.+|...|+++..+|++++|++|+.||.|.-|+
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 311 223468999999999999999999999999999999
Q ss_pred CCCCeeEEEe-ecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCc-------------ceEEe--cCCEEEEEeCCeE
Q 000961 277 VTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERER-------------PAFAV--SGDSLFYAKDRFL 340 (1208)
Q Consensus 277 ~~~~~~~~~~-~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~-------------~~~s~--~~~~L~~~~d~~i 340 (1208)
..++..-... +.|...|.+++.+..+.++.+|.|+.+.+..+.... ...+. ++..++.+-.+.|
T Consensus 349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 9988765544 568889999999999999999999999888653321 12222 3335555555555
Q ss_pred EEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEE
Q 000961 341 RYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIF 420 (1208)
Q Consensus 341 ~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~f 420 (1208)
.++.-.++- ...++ ...+.+++++|++..+++ +..|+.+++|.+.+....+.. ....|.+.+++++|
T Consensus 429 v~l~~~~~~--~~~~~--------~y~~s~vAv~~~~~~vaV--GG~Dgkvhvysl~g~~l~ee~-~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 429 VLLQDQTKV--SSIPI--------GYESSAVAVSPDGSEVAV--GGQDGKVHVYSLSGDELKEEA-KLLEHRAAITDVAY 495 (603)
T ss_pred EEEecCCcc--eeecc--------ccccceEEEcCCCCEEEE--ecccceEEEEEecCCccccee-eeecccCCceEEEE
Confidence 555422211 11111 127789999999998766 446889999999986543222 46789999999999
Q ss_pred EeCCcEEEEEcCCCEEEEEecCCceee--eecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEeC---CC
Q 000961 421 IARNRFAVLDKSSNQVLVKNLKNEVVK--KSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT---PF 492 (1208)
Q Consensus 421 s~d~~~l~~~~~dg~I~Iwdl~~~~~~--~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~~---~~ 492 (1208)
|||+.|++.+...+.+.+||+.....+ ....|. .|.+++|+|+.++++++ |..|.+|++......-.++. ..
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~g 575 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGG 575 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccC
Confidence 999999999999999999999955433 334444 99999999999999996 89999999987544333322 45
Q ss_pred eeEEEECCCCCEEEEEeCCeEEEEec
Q 000961 493 VKYVVWSNDMESVALLSKHAIIIASK 518 (1208)
Q Consensus 493 v~~v~ws~dg~~la~~s~~~i~i~~~ 518 (1208)
|..+.|-.+...+-++.+-.|.+|+.
T Consensus 576 Vn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 576 VNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ceeEEEecCceEEeccCcceeEEecc
Confidence 99999988877776666666888764
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-41 Score=382.51 Aligned_cols=482 Identities=16% Similarity=0.274 Sum_probs=395.6
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecc-cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~-h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1208)
-...+++++.+||+.+|++++..+.+++|++.+|+.++.++. |++||..++|+|.+.++++||.|+.|+|||+..+.+.
T Consensus 61 d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred chhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 346789999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEEcCCCC--EEEEEECCCcEEEEECCCCe-EEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEE
Q 000961 87 FTLLGHLDYIRTVQFHHEYP--WIVSASDDQTIRIWNWQSRT-CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 87 ~~l~~h~~~I~~v~fs~d~~--~l~s~s~Dg~I~iwd~~s~~-~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwd 163 (1208)
..+.||.+.|.++.|+|+-. .|++|..|+++++||+.+.. ++.++..|.+.|+++.|.+++..+++++.|..+.+||
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd 220 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWD 220 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEee
Confidence 99999999999999999865 58899999999999999544 5888899999999999999999999999999999999
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCce
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-----LPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
+...+.....|. ...+-++.+-++ |.++++.+.+|.+++||..+++.
T Consensus 221 ~~~~~~l~~lp~----------------------------ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~ 272 (775)
T KOG0319|consen 221 LVQYKKLKTLPL----------------------------YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKC 272 (775)
T ss_pred hhhhhhhheech----------------------------hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchh
Confidence 966554433221 122334444443 67999999999999999999886
Q ss_pred eEEEeecCc-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEe-CCCCEEEEEECC-Ceee
Q 000961 239 WEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASH-PEMNLLAAGHDS-GMIV 315 (1208)
Q Consensus 239 ~~~~~l~~h-~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~s-p~~~~la~g~~~-gi~v 315 (1208)
+...+.. ...+..+...+....++..+.|..+.++|..+.+....+-+.++.|..+.+- |+.+.+|++++. .+++
T Consensus 273 --~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 273 --VYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred --hhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence 3222221 3346677766666667777888999999999999999999999999998864 567788877655 4667
Q ss_pred EeeCCCcc---------eEE----ecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEE
Q 000961 316 FKLERERP---------AFA----VSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (1208)
Q Consensus 316 ~~l~~~~~---------~~s----~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ll 381 (1208)
++...... ..+ .+|..++++ +|+++++|.++++.......-...+| ...+.+++++..+..++
T Consensus 351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH---~~svgava~~~~~asff 427 (775)
T KOG0319|consen 351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH---TNSVGAVAGSKLGASFF 427 (775)
T ss_pred EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc---ccccceeeecccCccEE
Confidence 76554432 222 345577777 99999999996554433333344455 44999999988887776
Q ss_pred EEEecCCCEEEEEEccCCCCCCC------cccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-CceeeeecCCc-
Q 000961 382 ICSDVDGGSYELYVIPKDSIGRG------DSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI- 453 (1208)
Q Consensus 382 v~~~~~~g~v~l~~l~~~~~~~~------~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~l~~~~- 453 (1208)
++.+ .|+++++|.++....... ......|...|++++++|+.+++++++.|.+.+||+++ .....++.+|.
T Consensus 428 vsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEec-CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 6554 788999999987322111 11235688899999999999999999999999999999 67888999999
Q ss_pred ceEEEEEeCCccEEEE--eCCeEEEEEcCCCeEEEEEeC--CCeeEEEECCCCCEEEEEeCCe-EEEEecCccce
Q 000961 454 AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSKHA-IIIASKKLVHQ 523 (1208)
Q Consensus 454 ~v~~i~~s~dg~~Las--~dg~v~lwdl~~~~~l~~~~~--~~v~~v~ws~dg~~la~~s~~~-i~i~~~~~~~~ 523 (1208)
.|.++.|+|..+++++ +|.+|++|.+++..++.++.+ ..|..+.|-.+|+.+++++.++ +-+|+.+....
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 9999999999999977 599999999999999999997 6799999999999999998888 78898776543
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-40 Score=370.28 Aligned_cols=450 Identities=15% Similarity=0.246 Sum_probs=379.8
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC--------eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g--------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
..+|.|+.|||+|+++|++. .+.++||..... .+.+++.+|-..|+++.|+.|.++|++|+.|.++++|++
T Consensus 96 k~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 46899999999999999885 678999986432 345677899999999999999999999999999999999
Q ss_pred CCCeE--EEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-----------------------CeE-----EE-
Q 000961 81 KMHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-----------------------RTC-----IS- 129 (1208)
Q Consensus 81 ~~~~~--~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-----------------------~~~-----i~- 129 (1208)
+..+- ...+.+|.++|....|..+...+++.+.||.+.+|.... ++. ..
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 87665 567789999999999999999999999999999997651 111 11
Q ss_pred -----EEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccC
Q 000961 130 -----VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (1208)
Q Consensus 130 -----~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 204 (1208)
-+......|++..||+..+.|++|-..|...+|++.... +.+.+.-.+
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~---------------------------lih~LSis~ 307 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN---------------------------LIHSLSISD 307 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce---------------------------EEEEeeccc
Confidence 112233789999999999999999999999999987633 344566667
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 000961 205 RGVNWAAFHPTLPLIVSGADD-RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (1208)
Q Consensus 205 ~~V~~l~~sp~g~~L~sgs~d-g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~ 283 (1208)
.+|..++|+..|.+|+.|+.. |++-+|+..+..- +....+|...+++++++|||+++++|++||.|+|||..++.+.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 889999999999999999864 8999999998876 7888999999999999999999999999999999999999999
Q ss_pred EEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCC
Q 000961 284 QTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (1208)
Q Consensus 284 ~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 363 (1208)
.+|..|...++.+.|+..|+.+.+.+ -||+|+.||+...+....++.+.+.
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssS--------------------------LDGtVRAwDlkRYrNfRTft~P~p~--- 436 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSS--------------------------LDGTVRAWDLKRYRNFRTFTSPEPI--- 436 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEee--------------------------cCCeEEeeeecccceeeeecCCCce---
Confidence 99999999999999999999998887 4889999999988776666655422
Q ss_pred CCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-
Q 000961 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK- 442 (1208)
Q Consensus 364 ~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~- 442 (1208)
...+++..|.|..+ .+++-+.-.|.+|++.+ |+.+..+.+|.++|.+++|+|++..|++++.|.+|++||+-
T Consensus 437 ---QfscvavD~sGelV-~AG~~d~F~IfvWS~qT---GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 437 ---QFSCVAVDPSGELV-CAGAQDSFEIFVWSVQT---GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred ---eeeEEEEcCCCCEE-EeeccceEEEEEEEeec---CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 56778888888843 33444556788899886 55666789999999999999999999999999999999997
Q ss_pred -CceeeeecCCcceEEEEEeCCccEEEE--eCCeEEEEEcCCCeEEEEEeC----------------------CCeeEEE
Q 000961 443 -NEVVKKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT----------------------PFVKYVV 497 (1208)
Q Consensus 443 -~~~~~~l~~~~~v~~i~~s~dg~~Las--~dg~v~lwdl~~~~~l~~~~~----------------------~~v~~v~ 497 (1208)
...+.++.....+..+.|+|+|+-|++ -||.|.+||++.+..+..+.. ...+.+.
T Consensus 510 s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ 589 (893)
T KOG0291|consen 510 SSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC 589 (893)
T ss_pred cCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEE
Confidence 447888888889999999999999966 499999999998887765543 4578999
Q ss_pred ECCCCCEEEEEeCCe-EEEEecCcccee
Q 000961 498 WSNDMESVALLSKHA-IIIASKKLVHQC 524 (1208)
Q Consensus 498 ws~dg~~la~~s~~~-i~i~~~~~~~~~ 524 (1208)
+|+||..+..++... |.||+.....+.
T Consensus 590 ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 590 YSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred EcCCCCEEEecCCcccEEEEECchhhee
Confidence 999999988887754 888876654443
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=363.49 Aligned_cols=330 Identities=20% Similarity=0.331 Sum_probs=292.1
Q ss_pred EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000961 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1208)
+-..+.+|.++|.|+.|+|+|..|++|+.|.++++||+.+..+.++.++|...|.|++|+|||++|++|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEE-EEEecCCCCEEEEEEee-----CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceE
Q 000961 123 QSRTCI-SVLTGHNHYVMCASFHP-----KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1208)
Q Consensus 123 ~s~~~i-~~l~~h~~~V~~l~~~p-----~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1208)
.+|+++ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+. +
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~---------------------------~ 239 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT---------------------------C 239 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce---------------------------E
Confidence 988765 57899999999999987 45799999999999999987643 4
Q ss_pred EEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEc-----------cCC-----
Q 000961 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH-----------AKQ----- 260 (1208)
Q Consensus 197 ~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~s-----------p~g----- 260 (1208)
.+.+.+|..+|+|+.|-.+| +|++|+.|++|++|+...+.. ...+++|...|..++.+ |.+
T Consensus 240 ~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~--~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL--CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred EEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH--HHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 55889999999999998775 899999999999999999987 88999999999998876 223
Q ss_pred --------------------CEEEEEeCCCcEEEEeCCCC-eeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeC
Q 000961 261 --------------------DIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 261 --------------------~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~ 319 (1208)
..+++|+.|.++.+|+.... +++....+|..-|..+.||||++++|+++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS---------- 386 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS---------- 386 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee----------
Confidence 35999999999999997644 47778889999999999999999999998
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 320 RERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 320 ~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
.|+.|++|+-.+|+.+..+ + || -..|..++|+.|.+.+ ++++.|.++++|++...
T Consensus 387 ----------------FDkSVkLW~g~tGk~lasf--R--GH---v~~VYqvawsaDsRLl--VS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 387 ----------------FDKSVKLWDGRTGKFLASF--R--GH---VAAVYQVAWSADSRLL--VSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ----------------cccceeeeeCCCcchhhhh--h--hc---cceeEEEEeccCccEE--EEcCCCceEEEEEeeee
Confidence 5889999999999885543 3 33 3399999999998844 45667899999999876
Q ss_pred CCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEe
Q 000961 400 SIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKN 440 (1208)
Q Consensus 400 ~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwd 440 (1208)
.. ...+.+|.+.|.++.|+|||..+++++.|..+++|.
T Consensus 442 Kl---~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 KL---KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ee---cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 43 335789999999999999999999999999999995
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-41 Score=379.59 Aligned_cols=477 Identities=15% Similarity=0.242 Sum_probs=385.5
Q ss_pred eEeec-CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC--EEEEEECCCeEEEEE
Q 000961 3 TKFET-KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDYKIKVWN 79 (1208)
Q Consensus 3 ~~l~~-h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~--~Lasgs~Dg~I~vWd 79 (1208)
+.+++ |+++|..++|+|.+..|++|+.||.|+|||+..+.+.+.|++|.+.|.++.|+|+-. +|++|+.|+++++||
T Consensus 98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred HhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 34556 999999999999999999999999999999999999999999999999999999765 589999999999999
Q ss_pred CCCCe-EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeC-----CCEEEEE
Q 000961 80 YKMHR-CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-----EDLVVSA 153 (1208)
Q Consensus 80 ~~~~~-~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~-----~~~l~s~ 153 (1208)
+.++. |+.++..|.+.|+++.|++|+..+++++.|..+.|||+.+.+...++.. ...+-++.+-++ +.+++++
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhcCCcceEEEEe
Confidence 99554 5888899999999999999999999999999999999987777666653 345777778776 6799999
Q ss_pred ECCCeEEEEECCCCccccccCCC---c------------ceee-ccccccccccccceEEEEEeccCCCeEEEEEc-CCC
Q 000961 154 SLDQTVRVWDIGALRKKTVSPAD---D------------ILRL-SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH-PTL 216 (1208)
Q Consensus 154 s~Dg~V~vwdl~~~~~~~~~~~~---~------------~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~g 216 (1208)
+.+|.+++||..+.+........ . .+.+ ...+-.+.......+...+-|....|..++|- |+.
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 99999999999876543221111 1 0001 11111222233344444566777888888875 677
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEEeecCCCC
Q 000961 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREHDR 292 (1208)
Q Consensus 217 ~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~----~~~~~~~~~~~~ 292 (1208)
+++++++..+.+++|+..+..+ ..+.+|...|.++....+|-+|++|+.|+++++|.+.++ .++....+|...
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYC---QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred ceEEEEeCCCceEEEecCCCce---EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 8999999999999999988885 488999999999997778899999999999999977433 345556788888
Q ss_pred EEEEEEeCCCC-EEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcce---eeEeecCCCCCCCCcCC
Q 000961 293 FWILASHPEMN-LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT---QVIPIRRPGSTSLNQSP 368 (1208)
Q Consensus 293 i~~la~sp~~~-~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~i 368 (1208)
|.+++++..+- ++++++ .|.++++|++...+.. ..+..+.... .|...|
T Consensus 414 vgava~~~~~asffvsvS--------------------------~D~tlK~W~l~~s~~~~~~~~~~~~~t~~-aHdKdI 466 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVS--------------------------QDCTLKLWDLPKSKETAFPIVLTCRYTER-AHDKDI 466 (775)
T ss_pred cceeeecccCccEEEEec--------------------------CCceEEEecCCCcccccccceehhhHHHH-hhcccc
Confidence 99998866543 455555 5778888888762221 1121111111 234599
Q ss_pred eEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-Cceee
Q 000961 369 RTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVK 447 (1208)
Q Consensus 369 ~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~ 447 (1208)
.+++++|+.+.+ ++++.|.+.+||+++. ..+...+.+|+..+.++.|++..+.+++++.|.+|+||.++ ..+++
T Consensus 467 N~Vaia~ndkLi--AT~SqDktaKiW~le~---~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk 541 (775)
T KOG0319|consen 467 NCVAIAPNDKLI--ATGSQDKTAKIWDLEQ---LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK 541 (775)
T ss_pred cceEecCCCceE--EecccccceeeecccC---ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence 999999999844 5677889999999993 34445789999999999999999999999999999999999 78999
Q ss_pred eecCCc-ceEEEEEeCCccEEEE--eCCeEEEEEcCCCeEEEEEeC--CCeeEEEECCCCCEEEEEeCCeEEE
Q 000961 448 KSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSKHAIII 515 (1208)
Q Consensus 448 ~l~~~~-~v~~i~~s~dg~~Las--~dg~v~lwdl~~~~~l~~~~~--~~v~~v~ws~dg~~la~~s~~~i~i 515 (1208)
++.+|. .|....|-.+|+.|++ +||-+++|++.++.++.++.. ..|..++-+++..++++++.|+.++
T Consensus 542 T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 542 TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEE
Confidence 999988 8999999999999988 489999999999999999987 7799999999999999999988433
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.9e-40 Score=367.51 Aligned_cols=477 Identities=18% Similarity=0.296 Sum_probs=387.7
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
..|+|+.-+|+...||+|..||.|+||+..++....++.+|...|+++.|+..|.+|+|||.|+.|.|||+-...-+..+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCc-
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR- 168 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~- 168 (1208)
.||.+.|+...|..+.+++++.+.|+.|++||+.+..|..+.-.|.+.+..+++++ +.+++++.|+.+++|++....
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccc
Confidence 99999999999999889999999999999999999999999999999999999987 789999999999999981100
Q ss_pred -----------------------cccc-c-CCCcce------------ee------------------------------
Q 000961 169 -----------------------KKTV-S-PADDIL------------RL------------------------------ 181 (1208)
Q Consensus 169 -----------------------~~~~-~-~~~~~~------------~~------------------------------ 181 (1208)
.... . .....+ .+
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence 0000 0 000000 00
Q ss_pred -------------------------cccc-cc--c--c-----------------ccccceEEEEEeccCCCeEEEEEcC
Q 000961 182 -------------------------SQMN-TD--L--F-----------------GGVDAVVKYVLEGHDRGVNWAAFHP 214 (1208)
Q Consensus 182 -------------------------~~~~-~~--~--~-----------------~~~~~~~~~~~~~h~~~V~~l~~sp 214 (1208)
...+ .. + + ...+..-...+.||...|.+++++.
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 0000 00 0 0 0000111235678999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEE
Q 000961 215 TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW 294 (1208)
Q Consensus 215 ~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~ 294 (1208)
+...+++|+ .+.+++|+..+.++ +.++.. +.+.+..|-|.++++++|...|.+.+||+.+...+.+++.|.+.+|
T Consensus 384 d~~~~~Sga-~~SikiWn~~t~kc--iRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW 458 (888)
T KOG0306|consen 384 DSILLASGA-GESIKIWNRDTLKC--IRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIW 458 (888)
T ss_pred CceeeeecC-CCcEEEEEccCcce--eEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccccee
Confidence 876666654 67899999999987 666654 3788999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccC-----CcceeeEeecCCCCCCCCcCCe
Q 000961 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST-----QKDTQVIPIRRPGSTSLNQSPR 369 (1208)
Q Consensus 295 ~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~~~~~~~~i~ 369 (1208)
+++.+||+..+++|+. |++|++||+.- |.....+++.....-.+...+.
T Consensus 459 si~~~pD~~g~vT~sa--------------------------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGSA--------------------------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred eeeecCCCCceEEecC--------------------------CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 9999999999998873 56666666542 1111122222211112234899
Q ss_pred EEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-Cceeee
Q 000961 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKK 448 (1208)
Q Consensus 370 ~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~ 448 (1208)
++++||||++++++- -|.++.+|-++.-.. .-.+.+|.-+|.++..|||++++++++.|.+|+||-++ |.+.++
T Consensus 513 ~v~~Spdgk~LaVsL--LdnTVkVyflDtlKF---flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSL--LDNTVKVYFLDTLKF---FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred EEEEcCCCcEEEEEe--ccCeEEEEEecceee---eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh
Confidence 999999999887643 467999999886432 22578999999999999999999999999999999999 999999
Q ss_pred ecCCc-ceEEEEEeCCccEEEE--eCCeEEEEEcCCCeEEEEEeC--CCeeEEEECCCCCEEEEEeC-CeEEEEecCccc
Q 000961 449 SILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSK-HAIIIASKKLVH 522 (1208)
Q Consensus 449 l~~~~-~v~~i~~s~dg~~Las--~dg~v~lwdl~~~~~l~~~~~--~~v~~v~ws~dg~~la~~s~-~~i~i~~~~~~~ 522 (1208)
+-.|. .|.++.|-|...++.+ .|+.|+-||-..-+.+..+.. ..|.+++.+|+|.++++++. +.|.+|...-+.
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 98887 8999999998777755 389999999988888888877 67999999999999999988 558998877655
Q ss_pred ee
Q 000961 523 QC 524 (1208)
Q Consensus 523 ~~ 524 (1208)
+.
T Consensus 668 ~~ 669 (888)
T KOG0306|consen 668 LI 669 (888)
T ss_pred ee
Confidence 43
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.2e-39 Score=347.18 Aligned_cols=462 Identities=15% Similarity=0.279 Sum_probs=371.0
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecC----CeEEEEECCCCeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHS----GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKV 77 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~d----g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~v 77 (1208)
.+|+.-.++|+.++|++|+++|++.+.. |.+.+|| +|..+..+.+|...|.+++|-|..+ +++||++|++|.+
T Consensus 97 nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~f 174 (603)
T KOG0318|consen 97 NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAF 174 (603)
T ss_pred eeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEE
Confidence 3567778999999999999999988753 4566776 8999999999999999999999988 6999999999999
Q ss_pred EECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe---cCCCCEEEEEEeeCCCEEEEEE
Q 000961 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT---GHNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~---~h~~~V~~l~~~p~~~~l~s~s 154 (1208)
|.-...+...++..|+..|.++.|+|||.++++++.||.|.+||-.+++.+..+. +|.+.|.+++|+||+..+++++
T Consensus 175 feGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 175 FEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred eeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec
Confidence 9977778888889999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred CCCeEEEEECCCCccccccCCCcc---------------eeeccccc-cccccccceEEEEEeccCCCeEEEEEcCCCCE
Q 000961 155 LDQTVRVWDIGALRKKTVSPADDI---------------LRLSQMNT-DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218 (1208)
Q Consensus 155 ~Dg~V~vwdl~~~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 218 (1208)
.|.++++||+.+.+.....+.... +.++..+. ..+...+..+...+.||...|+++..+|++.+
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 999999999988766554433221 11111111 23344455577789999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEee--cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE--eecCCCCEE
Q 000961 219 IVSGADDRQVKLWRMNETKAWEVDTL--RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT--FRREHDRFW 294 (1208)
Q Consensus 219 L~sgs~dg~I~iwd~~~~~~~~~~~l--~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~--~~~~~~~i~ 294 (1208)
|++|+.||.|.-|+..++.. ..+ .+|.+.|.+++-+..+. +++.+.|.++++.++..+..... ++.... ..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q-P~ 409 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTS---DRLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ-PK 409 (603)
T ss_pred EEeeccCceEEEEecCCccc---cccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccceeecCCC-ce
Confidence 99999999999999998874 333 67999999999886554 77888899999998754433222 232333 34
Q ss_pred EEEEeCCCCEEEEEECCCeeeEeeCC-----------CcceEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCC
Q 000961 295 ILASHPEMNLLAAGHDSGMIVFKLER-----------ERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGST 362 (1208)
Q Consensus 295 ~la~sp~~~~la~g~~~gi~v~~l~~-----------~~~~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~ 362 (1208)
+++..+++.+++..+.+++.+.+-.+ ...+++++++.++++ .|+.+++|.+..+..........+
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h--- 486 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH--- 486 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc---
Confidence 89999999888888888888775222 223677788899988 999999999998765444333332
Q ss_pred CCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC
Q 000961 363 SLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1208)
Q Consensus 363 ~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1208)
..+|+.++||||+.+++++. ..+.+.+|++....... ....-|...|.+++|+|+++.+++++-|..|.||+++
T Consensus 487 --~a~iT~vaySpd~~yla~~D--a~rkvv~yd~~s~~~~~--~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 487 --RAAITDVAYSPDGAYLAAGD--ASRKVVLYDVASREVKT--NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred --cCCceEEEECCCCcEEEEec--cCCcEEEEEcccCceec--ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 33999999999999886643 45789999998765421 1345689999999999999999999999999999998
Q ss_pred Cc--eeeeecCCc-ceEEEEEeCCccEEEEe-CCeEEEEEcC
Q 000961 443 NE--VVKKSILPI-AADAIFYAGTGNLLCRA-EDRVVIFDLQ 480 (1208)
Q Consensus 443 ~~--~~~~l~~~~-~v~~i~~s~dg~~Las~-dg~v~lwdl~ 480 (1208)
.. .+.....|. .|+.+.|-.+..++-++ |..|++|.+.
T Consensus 561 kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 561 KPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 32 222222333 89999999887776554 8999999873
No 13
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-39 Score=368.35 Aligned_cols=655 Identities=20% Similarity=0.320 Sum_probs=440.0
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
+|.+|..|.++|++++|||+++++++|+.|-.|+||++++.+++.++.+|-.-|+.+.||+.-++++|+|+|.+|+|||+
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW 122 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-----------------------------eEEEEE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-----------------------------TCISVL 131 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-----------------------------~~i~~l 131 (1208)
.+++++..++||..+|.|..|+|....++|+|-|++|||||+..- -....+
T Consensus 123 qsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 123 QSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred cCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999999999999999999999999999999999999998521 112456
Q ss_pred ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE
Q 000961 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1208)
Q Consensus 132 ~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (1208)
.||...|..++|+|.-.+|++|+.|+.|++|.++..+... .-+..+|...|.++-
T Consensus 203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE-------------------------vDtcrgH~nnVssvl 257 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE-------------------------VDTCRGHYNNVSSVL 257 (1202)
T ss_pred cccccccceEEecCCcceEEecCCcceeeEEEecccccee-------------------------ehhhhcccCCcceEE
Confidence 7999999999999999999999999999999987644321 225679999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCC
Q 000961 212 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291 (1208)
Q Consensus 212 ~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 291 (1208)
|||..+++++.+.|++|++||+...+. +.+++......+.++-||..+++++|.. +-+.||.+....+...+.
T Consensus 258 fhp~q~lIlSnsEDksirVwDm~kRt~--v~tfrrendRFW~laahP~lNLfAAgHD-sGm~VFkleRErpa~~v~---- 330 (1202)
T KOG0292|consen 258 FHPHQDLILSNSEDKSIRVWDMTKRTS--VQTFRRENDRFWILAAHPELNLFAAGHD-SGMIVFKLERERPAYAVN---- 330 (1202)
T ss_pred ecCccceeEecCCCccEEEEecccccc--eeeeeccCCeEEEEEecCCcceeeeecC-CceEEEEEcccCceEEEc----
Confidence 999999999999999999999998887 8888888899999999999998887764 447777765433322211
Q ss_pred CEEEEEEeCCCCEEEEEECCCeeeEeeCC-----------Cc----c----eEEecCCEEEEE---eCCeEEEEEccCCc
Q 000961 292 RFWILASHPEMNLLAAGHDSGMIVFKLER-----------ER----P----AFAVSGDSLFYA---KDRFLRYYEFSTQK 349 (1208)
Q Consensus 292 ~i~~la~sp~~~~la~g~~~gi~v~~l~~-----------~~----~----~~s~~~~~L~~~---~d~~i~v~d~~~~~ 349 (1208)
++.+....+..++.+++.+ .. | .+.+..+.+..+ ..+...++.+....
T Consensus 331 ----------~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~ 400 (1202)
T KOG0292|consen 331 ----------GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDS 400 (1202)
T ss_pred ----------CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcc
Confidence 1111111122333333322 11 1 122222222222 33333344333211
Q ss_pred ceeeEeecCCCCCCCCcCCeEEEEcCCCCEE-------EEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEe
Q 000961 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAV-------LICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIA 422 (1208)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l-------lv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~ 422 (1208)
... . +.....=+|....+ ++... .+..+.+-++.......+. .. ..+..+-+..
T Consensus 401 ~~~----------~---~~~~~~k~tG~~a~fvarNrfavl~k-~~~~v~ik~l~N~vtkkl~----~~-~~~~~IF~ag 461 (1202)
T KOG0292|consen 401 DGV----------S---DGKDVKKGTGEGALFVARNRFAVLDK-SNEQVVIKNLKNKVTKKLL----LP-ESTDDIFYAG 461 (1202)
T ss_pred ccc----------C---CchhhhcCCCCceEEEEecceEEEEe-cCcceEEecccchhhhccc----Cc-ccccceeecc
Confidence 100 0 11111112222211 12111 1233444444433222211 10 1334455666
Q ss_pred CCcEEEEEcCCCEEEEEecC-CceeeeecCCcceEEEEEeCCccEEEE-eCCeEEEEEcCCCeEEEEEeC-CCeeEEEEC
Q 000961 423 RNRFAVLDKSSNQVLVKNLK-NEVVKKSILPIAADAIFYAGTGNLLCR-AEDRVVIFDLQQRLVLGDLQT-PFVKYVVWS 499 (1208)
Q Consensus 423 d~~~l~~~~~dg~I~Iwdl~-~~~~~~l~~~~~v~~i~~s~dg~~Las-~dg~v~lwdl~~~~~l~~~~~-~~v~~v~ws 499 (1208)
.|.+++... ..|.++|++ ...+..++.. .+.-+.||+|+..++. +..+|.+++. .-+.+.++.. -.|++-+|.
T Consensus 462 ~g~lll~~~--~~v~lfdvQq~~~~~si~~s-~vkyvvws~dm~~vAll~Kh~i~i~~k-kL~l~~sihEtiriksgawd 537 (1202)
T KOG0292|consen 462 TGNLLLRSP--DSVTLFDVQQKKKVGSIKVS-KVKYVVWSNDMSRVALLSKHTITIADK-KLELLCSIHETIRIKSGAWD 537 (1202)
T ss_pred CccEEEEcC--CeEEEEEeecceEEEEEecC-ceeEEEEcCccchhhhcccceEEEEec-chhheecchheeEeeeceec
Confidence 676666654 679999999 4455566544 8899999999888855 6788999986 3444555544 568999999
Q ss_pred CCCCEEEEEeCCe-EEEEecCccceeeeecceeeeeeEEecCCeEEEecCCeeeeEec-CCceeEEEeccccEEEEEE--
Q 000961 500 NDMESVALLSKHA-IIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLP-NGDSGIIRTLDVPIYITKV-- 575 (1208)
Q Consensus 500 ~dg~~la~~s~~~-i~i~~~~~~~~~~~~e~~~iks~~wd~~~~~iy~t~~~i~y~l~-~g~~g~i~~l~~~~~l~~~-- 575 (1208)
.+|-++.+..+|- ..+.+.+.+.+.++.-+ +.+..-.....|||. .++. .+-+++.+.|.++.
T Consensus 538 e~gVfiYtT~nHikYal~~GD~GIikTLd~~------------iyitkv~gn~V~cl~rd~~~-~~~~IDptEy~FKlAL 604 (1202)
T KOG0292|consen 538 EDGVFIYTTLNHIKYALENGDSGIIKTLDKP------------IYITKVKGNKVFCLNRDGEI-ECLTIDPTEYRFKLAL 604 (1202)
T ss_pred cCceEEEEehhhhhhhhccCCcceEEecccc------------eEEEEeeCCEEEEEecCCCe-EEEeechHHHHHHHHH
Confidence 9998888777765 33445555555555332 222222234445543 3333 34445555554432
Q ss_pred -eC--CEEEEEecCCceEEEEcChhh------HHHH-HhhcccccccchHHHHHHHhCCChhhhhcccc---Ccch--hh
Q 000961 576 -SG--NTIFCLDRDGKNRAIVIDATE------YDHV-MSMIRNSQLCGQAMIAYLQQKGFPEVALHFVK---DERT--RF 640 (1208)
Q Consensus 576 -~~--~~l~~l~r~~~~~~~~ld~~e------~~~~-l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~---~~~~--~f 640 (1208)
.. +.+.-+-+++++....+ .. |+++ ++.++.+.. -.......|..|+|++..+ |+.. |.
T Consensus 605 i~k~ydeVl~lI~ns~LvGqai--IaYLqKkgypeiAL~FVkD~~t----RF~LaLe~gnle~ale~akkldd~d~w~rL 678 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLVGQAI--IAYLQKKGYPEIALHFVKDERT----RFELALECGNLEVALEAAKKLDDKDVWERL 678 (1202)
T ss_pred HhhhhHHHHHHHHhcCcccHHH--HHHHHhcCCcceeeeeecCcch----heeeehhcCCHHHHHHHHHhcCcHHHHHHH
Confidence 00 11111112222221111 11 2222 344444331 0122345688888888765 3333 22
Q ss_pred -HHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhh---cCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 641 -NLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRT---KNFERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 641 -~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~---~d~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
+-|+..||-+.|--+.+..+ .|++|.-..+-.||.+.-.+....+ +|........+.+|+.+.-.++. +.
T Consensus 679 ge~Al~qgn~~IaEm~yQ~~k---nfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl---~n 752 (1202)
T KOG0292|consen 679 GEEALRQGNHQIAEMCYQRTK---NFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKIL---EN 752 (1202)
T ss_pred HHHHHHhcchHHHHHHHHHhh---hhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHH---Hh
Confidence 67899999998887766665 4999999889999988877755443 45555555555667777666554 46
Q ss_pred cCCchhhHHHHHhcCCHHHHHHHHHHcCC
Q 000961 717 KNDVMGQFHNALYLGDVKERVKILESAGH 745 (1208)
Q Consensus 717 ~~~~~~~~~~al~lgd~~~A~~i~~~~g~ 745 (1208)
-|....++..+.-.|.-++|+++..+.+.
T Consensus 753 ~g~~~laylta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 753 GGQLPLAYLTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred cCcccHHHHHHhhcCcHHHHHHHHHhhcc
Confidence 78888888899999999999999888774
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-38 Score=351.69 Aligned_cols=422 Identities=17% Similarity=0.248 Sum_probs=357.1
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeE--EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~--i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
+++.+|...|+++.|+.|.++|++|+.|-+++||+++..+- ...+.+|.++|.+.-|..++..+.+.+.||.+.+|..
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence 57889999999999999999999999999999999876655 5677899999999999999999999999999999987
Q ss_pred CC-----------------------CeE-----E------EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 000961 81 KM-----------------------HRC-----L------FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126 (1208)
Q Consensus 81 ~~-----------------------~~~-----~------~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~ 126 (1208)
.. ++. . .-+......|++.+||+....|+++-..|...+|.+..-.
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~ 298 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN 298 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce
Confidence 61 110 0 1112233679999999999999999999999999999999
Q ss_pred EEEEEecCCCCEEEEEEeeCCCEEEEEECC-CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC
Q 000961 127 CISVLTGHNHYVMCASFHPKEDLVVSASLD-QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR 205 (1208)
Q Consensus 127 ~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D-g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 205 (1208)
+++.+.-...+|..++|+..|++|+.|+.. |.+-||+..+.. ......+|..
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---------------------------YVlKQQgH~~ 351 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---------------------------YVLKQQGHSD 351 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc---------------------------eeeecccccc
Confidence 999999888999999999999999998865 899999987622 3446778999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 000961 206 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT 285 (1208)
Q Consensus 206 ~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~ 285 (1208)
.+++++++|||+++++|++||.|++||..++-+ ..++..|++.|+.+.|+..|+.+++.+-||+||.||+...+..++
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 999999999999999999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred eecCC-CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCC
Q 000961 286 FRREH-DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSL 364 (1208)
Q Consensus 286 ~~~~~-~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 364 (1208)
|..+. -.+.+++..|.|.++.+|..+. -.|.+|++++|+.+.+++ ||
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG~~d~-------------------------F~IfvWS~qTGqllDiLs----GH--- 477 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAGAQDS-------------------------FEIFVWSVQTGQLLDILS----GH--- 477 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEeeccce-------------------------EEEEEEEeecCeeeehhc----CC---
Confidence 88654 3578999999999999998643 247799999999877654 33
Q ss_pred CcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-C
Q 000961 365 NQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-N 443 (1208)
Q Consensus 365 ~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~ 443 (1208)
.++|.+++|+|++..+ ++++-|.+|++|++-.... .. ..-.+...+..+.|.|+|+-+++++-||.|.+||.+ +
T Consensus 478 EgPVs~l~f~~~~~~L--aS~SWDkTVRiW~if~s~~-~v--Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 478 EGPVSGLSFSPDGSLL--ASGSWDKTVRIWDIFSSSG-TV--ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred CCcceeeEEccccCeE--EeccccceEEEEEeeccCc-ee--eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 6699999999999944 5566889999999865421 11 122455678999999999999999999999999987 3
Q ss_pred ceeeeecC----------------C-----cceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEeC
Q 000961 444 EVVKKSIL----------------P-----IAADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT 490 (1208)
Q Consensus 444 ~~~~~l~~----------------~-----~~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~~ 490 (1208)
..+.++.+ . ...+.|++|+||..++++ ...|.+||+.++-++..+..
T Consensus 553 ~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 553 VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence 33322221 1 168899999999999885 58999999999988877755
No 15
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=2.3e-39 Score=357.60 Aligned_cols=621 Identities=16% Similarity=0.266 Sum_probs=430.1
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~ 90 (1208)
.|..++|-|||..|+.+. +..+.+||...|.+++++++|...|.|++|+.+|++|++|+.|..|.+|+-+-...+ . .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-Y 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-e
Confidence 799999999999998884 667999999999999999999999999999999999999999999999986533222 2 2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccc
Q 000961 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (1208)
Q Consensus 91 ~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~ 170 (1208)
.|.+.|.|+.|+|-...|++++-. ..-+|......... .+ ....+.+.+|..||.+++.|-.+|+|.+-+-.+..+.
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 499999999999999999998864 46788765443322 11 3467889999999999999999999999865442221
Q ss_pred cccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCceeEEEeec
Q 000961 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-----PLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (1208)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-----~~L~sgs~dg~I~iwd~~~~~~~~~~~l~ 245 (1208)
. .....|.+.+|.+++|+|.. ..+++.....++.+|.++... +..-+
T Consensus 168 ~-------------------------I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~---Igk~r 219 (1081)
T KOG1538|consen 168 K-------------------------IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ---IGKDR 219 (1081)
T ss_pred E-------------------------EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---ecccc
Confidence 1 11223567899999999953 478888888999999887654 33334
Q ss_pred CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCee-eEeeC-----
Q 000961 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLE----- 319 (1208)
Q Consensus 246 ~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~-v~~l~----- 319 (1208)
.-.-...|+.+.|+|.+++.|+.|+.+.+|. +.|..+.++......||.++.+|+++.++.|+.+|.+ .|++.
T Consensus 220 ~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH 298 (1081)
T KOG1538|consen 220 ALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVH 298 (1081)
T ss_pred cCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhh
Confidence 4455677999999999999999999999997 5677888877777899999999999999999988755 22221
Q ss_pred ---CCcc-----------------------------eEEecCCEEEEEeCCeEEEEEccCCcceeeEe-ecCCCCCCCCc
Q 000961 320 ---RERP-----------------------------AFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP-IRRPGSTSLNQ 366 (1208)
Q Consensus 320 ---~~~~-----------------------------~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~ 366 (1208)
.++. .+++..++|++.-...|.+|.+.+++..++.. ++..
T Consensus 299 ~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v~ek------- 371 (1081)
T KOG1538|consen 299 GLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRVKEK------- 371 (1081)
T ss_pred hhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHHHHH-------
Confidence 1111 33455677777767778899988766543321 1100
Q ss_pred CCeEEEEc---CCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEE--EEeCC-cEEEEEcCCCEEEEEe
Q 000961 367 SPRTLSYS---PTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAI--FIARN-RFAVLDKSSNQVLVKN 440 (1208)
Q Consensus 367 ~i~~l~~s---pdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~--fs~d~-~~l~~~~~dg~I~Iwd 440 (1208)
-...+.+| -.++.+++|.. ..++.++..+-...+-. . .+-|.-+. =.|-| .-++.|..+|.|.-.=
T Consensus 372 I~kkf~cSLlVVc~~HiVlCqe---krLqClDF~Gvk~ReW~--M---~S~iRYikV~GGP~gREgL~vGlknGqV~kiF 443 (1081)
T KOG1538|consen 372 IIKKFECSLLVVCANHIVLCQE---KRLQCLDFSGVKEREWQ--M---ESLIRYIKVIGGPPGREGLLVGLKNGQVLKIF 443 (1081)
T ss_pred HHhhccceEEEEEcCeEEEEcc---cceeeecccchhhhhhh--H---HHHHHhhhhhcCCCCcceeEEEecCCcEEEEE
Confidence 11112221 12344555444 56666665542211000 0 00011111 11223 2344444455543322
Q ss_pred cCCc-eeeeecCCcceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEeCCCeeEEEECCCCCE-EEEEeCCeEEEE
Q 000961 441 LKNE-VVKKSILPIAADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMES-VALLSKHAIIIA 516 (1208)
Q Consensus 441 l~~~-~~~~l~~~~~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~~~~v~~v~ws~dg~~-la~~s~~~i~i~ 516 (1208)
+++. .+.-.+....|.++.++.+.+.|++- .++..++|+.+++.+.+-+ ++.+|+|+....- ++..+...+.+
T Consensus 444 ~dN~~PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEp--g~nSV~wNT~~E~MlcfT~~g~L~V- 520 (1081)
T KOG1538|consen 444 VDNLFPILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEP--GANSVAWNTQCEDMLCFTGGGYLNV- 520 (1081)
T ss_pred ecCCchhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecC--CCceEEeeccccceEEEecCCceEE-
Confidence 3332 22222222378999999998888775 3788899999998876554 6888999765432 22222221111
Q ss_pred ecCccceeeeecceeeeeeEEecCCeEEEecCCeeeeEecCCceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEcCh
Q 000961 517 SKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDA 596 (1208)
Q Consensus 517 ~~~~~~~~~~~e~~~iks~~wd~~~~~iy~t~~~i~y~l~~g~~g~i~~l~~~~~l~~~~~~~l~~l~r~~~~~~~~ld~ 596 (1208)
+...+ ..+.-....|++++.++++||+.
T Consensus 521 ----------------R~~~~------------------------P~h~qk~~G~VvG~~gsk~FCL~------------ 548 (1081)
T KOG1538|consen 521 ----------------RASTF------------------------PVHRQKLQGFVVGYNGSKIFCLH------------ 548 (1081)
T ss_pred ----------------EeccC------------------------CcchhcceEEEEEecCceEEEEE------------
Confidence 11000 01112233577888999999983
Q ss_pred hhHHHHHhhcccccccchHHHHHHHhCCChhhhhccccCcchhhHHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcC
Q 000961 597 TEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQG 676 (1208)
Q Consensus 597 ~e~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g 676 (1208)
+..+...+.+.+..+.+|++..-|+|. +..|+-.+...+ |+.||+.||+..
T Consensus 549 -----~~~i~~~evp~~~~m~q~Ieag~f~ea--------------------~~iaclgVv~~D----W~~LA~~ALeAL 599 (1081)
T KOG1538|consen 549 -----VFSISAVEVPQSAPMYQYIERGLFKEA--------------------YQIACLGVTDTD----WRELAMEALEAL 599 (1081)
T ss_pred -----eeeeecccccccccchhhhhccchhhh--------------------hcccccceecch----HHHHHHHHHhhh
Confidence 112223334444555666655444443 334444444555 999999999999
Q ss_pred ChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhc
Q 000961 677 NAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVH 756 (1208)
Q Consensus 677 ~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~ 756 (1208)
++++|.++|.+.+|...|..+ .+|+++.+..+..++. ..+.+..|.|+|.||+++|.++|+-..|++|+..+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li-------~EL~~~k~rge~P~~i-LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDl 671 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELI-------SELEERKKRGETPNDL-LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDL 671 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHH-------HHHHHHHhcCCCchHH-HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHH
Confidence 999999999999999999999 8999987744444433 44588999999999999999999999999999999
Q ss_pred CChHHHHHHHHHcCCCC
Q 000961 757 GLQDVAERLAAELGDNV 773 (1208)
Q Consensus 757 g~~~~a~~l~~~~~~~~ 773 (1208)
.+.+.|++.+.+..+++
T Consensus 672 RMFD~aQE~~~~g~~~e 688 (1081)
T KOG1538|consen 672 RMFDYAQEFLGSGDPKE 688 (1081)
T ss_pred HHHHHHHHHhhcCChHH
Confidence 99999999999866555
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=353.81 Aligned_cols=274 Identities=23% Similarity=0.436 Sum_probs=263.4
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcC--CCEEEEEECCCeEEEEECCCCe
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS--QPLFVSGGDDYKIKVWNYKMHR 84 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~--~~~Lasgs~Dg~I~vWd~~~~~ 84 (1208)
|-+.+|..+.||+|+..|++|+-+|.++||+..++..+++|.+|.+.|.++.|+|. +..+|||+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45678999999999999999999999999999999999999999999999999997 5689999999999999999999
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEEC
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl 164 (1208)
++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++..+....||...|.+++|+|+|.++++|+.|..-+|||+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEee
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL 244 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l 244 (1208)
++++. ...+.+|...|..++|+|+|..|++|+.|++++|||++..+. +.++
T Consensus 333 Rtgr~---------------------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--ly~i 383 (459)
T KOG0272|consen 333 RTGRC---------------------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--LYTI 383 (459)
T ss_pred ccCcE---------------------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc--ceec
Confidence 99764 457889999999999999999999999999999999999887 8999
Q ss_pred cCcCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 245 RGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 245 ~~h~~~V~~l~~sp-~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
.+|.+-|+.+.|+| .|.+|++++.|+++++|...+..+++++.+|.+.|.++..+++++.+++++
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 99999999999999 789999999999999999999999999999999999999999999999887
No 17
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-36 Score=332.24 Aligned_cols=655 Identities=20% Similarity=0.280 Sum_probs=420.6
Q ss_pred EEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s 124 (1208)
+++..|..+|.++.|||..++++++-.+|.|.|||+++...+..+....-+|++..|-+..+|+++|++|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34556899999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccC
Q 000961 125 RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (1208)
Q Consensus 125 ~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 204 (1208)
++.+..+..|.++|.|++.||...+++++|.|-+|++||... ...+..+++||.
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--------------------------~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--------------------------EWACEQTFEGHE 140 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC--------------------------ceeeeeEEcCcc
Confidence 999999999999999999999999999999999999999876 334567899999
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCCe
Q 000961 205 RGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ--DIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 205 ~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g--~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
.-|.+++|+| |.+.+++++-|++|++|.+.+..+ ..++.+|...|.|+.+-+.| .+|++|+.|.+|+|||..+..
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~--nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP--NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCC--ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 9999999999 567999999999999999998887 88999999999999998744 699999999999999999999
Q ss_pred eEEEeecCCCCEEEEEEeCCCCEEEEEECCC-eeeEeeCCCcc--eEEecCCEEEEEeCCeEEEEEccCCcce-------
Q 000961 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSG-MIVFKLERERP--AFAVSGDSLFYAKDRFLRYYEFSTQKDT------- 351 (1208)
Q Consensus 282 ~~~~~~~~~~~i~~la~sp~~~~la~g~~~g-i~v~~l~~~~~--~~s~~~~~L~~~~d~~i~v~d~~~~~~~------- 351 (1208)
+++++.+|...|..+.|+|.-.++++|+.+| +++|.-.+-+. .+.... =++|.+...+..
T Consensus 219 CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl----------eRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 219 CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL----------ERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC----------ceEEEEeecCCCCeEEEec
Confidence 9999999999999999999999999998544 44554332211 111111 123333211100
Q ss_pred ----eeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC---CCCCCccccccc-----CCceEEEE
Q 000961 352 ----QVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD---SIGRGDSVQDAK-----KGLGGSAI 419 (1208)
Q Consensus 352 ----~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~---~~~~~~~~~~~~-----~~~i~~~~ 419 (1208)
.++.+ |. ....++..+.|+.+-...+ +-..+.+-.+... ..++.+ ++..+ .-....++
T Consensus 289 Deg~i~v~l---gr-----eeP~vsMd~~gKIiwa~~~-ei~~~~~ks~~~~~ev~DgErL-~LsvKeLgs~eiyPq~L~ 358 (794)
T KOG0276|consen 289 DEGSVTVKL---GR-----EEPAVSMDSNGKIIWAVHS-EIQAVNLKSVGAQKEVTDGERL-PLSVKELGSVEIYPQTLA 358 (794)
T ss_pred cCCcEEEEc---cC-----CCCceeecCCccEEEEcCc-eeeeeeceeccCcccccCCccc-cchhhhccccccchHHhc
Confidence 01111 00 2223344444432211111 1111111111111 001111 11100 11223577
Q ss_pred EEeCCcEEEEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEEEE--eCCeEEEEEcCCCeEEEEEeCCCeeEEE
Q 000961 420 FIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQTPFVKYVV 497 (1208)
Q Consensus 420 fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las--~dg~v~lwdl~~~~~l~~~~~~~v~~v~ 497 (1208)
-+|+||+++.++ ||.-.||..-.- +-+.-+......|++|....+. +++.|.++ ...+...++..... .-
T Consensus 359 hsPNGrfV~Vcg-dGEyiIyTala~---RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~--~e 430 (794)
T KOG0276|consen 359 HSPNGRFVVVCG-DGEYIIYTALAL---RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS--AE 430 (794)
T ss_pred cCCCCcEEEEec-CccEEEEEeeeh---hhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc--ee
Confidence 889999999998 888888763211 1112225677889998444444 37888888 67777777765322 22
Q ss_pred ECCCCCEEEEEeCCeEEEEecCccce-eeeecceeeeeeEEecCCeEEEecCCeeeeEec-CC-------ceeEEEeccc
Q 000961 498 WSNDMESVALLSKHAIIIASKKLVHQ-CTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLP-NG-------DSGIIRTLDV 568 (1208)
Q Consensus 498 ws~dg~~la~~s~~~i~i~~~~~~~~-~~~~e~~~iks~~wd~~~~~iy~t~~~i~y~l~-~g-------~~g~i~~l~~ 568 (1208)
.--.|.++.+.+.+.+++|+.+...+ ..+. +..|...|.+++.++-.....--|++- |- +.|+.-+.+.
T Consensus 431 ~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~--v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeG 508 (794)
T KOG0276|consen 431 GIFGGPLLGVRSSDFLCFYDWESGELVRRIE--VTSKHVYWSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEG 508 (794)
T ss_pred eecCCceEEEEeCCeEEEEEcccceEEEEEe--eccceeEEecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchh
Confidence 22347888899999999999665544 3342 356889999887665543222222210 10 1111111000
Q ss_pred ----------------------cEEEEEEeCCEEEEEecCCceEEEEcChhhH--------------HHHHhhccccccc
Q 000961 569 ----------------------PIYITKVSGNTIFCLDRDGKNRAIVIDATEY--------------DHVMSMIRNSQLC 612 (1208)
Q Consensus 569 ----------------------~~~l~~~~~~~l~~l~r~~~~~~~~ld~~e~--------------~~~l~~i~~~~~~ 612 (1208)
.-++..-..+++.++-.+..+....+|-..| ++-+..+....+
T Consensus 509 iedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy~~~~~rvYL~Dke~nVi~y~l~- 587 (794)
T KOG0276|consen 509 IEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGYVANDNRVYLHDKELNVISYKIL- 587 (794)
T ss_pred HHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccchhheeeeecCCEEEEeecccceEeEeee-
Confidence 0011112334444443444444555544331 111222222222
Q ss_pred chHHHHH--HHhCCChhhhhccc----cCcchhhHHHHh-cCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHH
Q 000961 613 GQAMIAY--LQQKGFPEVALHFV----KDERTRFNLALE-SGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAY 685 (1208)
Q Consensus 613 ~~~i~~y--l~~~g~~e~Al~~~----~~~~~~f~lal~-~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y 685 (1208)
.++..| +.-.|..+.|-..+ ++.+++-.-.++ .|=.+.|++.+..-++ -=+.|++.|++++|....
T Consensus 588 -l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~------rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 588 -LEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQ------RFELALKLGRLDIAFDLA 660 (794)
T ss_pred -hHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhh------hhhhhhhcCcHHHHHHHH
Confidence 222222 33344445544422 233444433333 3444556655322221 113456667777776655
Q ss_pred HhhcC---cchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCH---HHHHHHHHHcCCChHHHHHHHhcCCh
Q 000961 686 QRTKN---FERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDV---KERVKILESAGHLPLAYITASVHGLQ 759 (1208)
Q Consensus 686 ~~~~d---~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~---~~A~~i~~~~g~~~~A~~~a~~~g~~ 759 (1208)
++..+ ++.|..+.+..|++....+... ...|.....-.+...|+. ..+.+.-.+.|+...|+..+=..|+.
T Consensus 661 ~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~---~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~ 737 (794)
T KOG0276|consen 661 VEANSEVKWRQLGDAALSAGELPLASECFL---RARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDY 737 (794)
T ss_pred HhhcchHHHHHHHHHHhhcccchhHHHHHH---hhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCH
Confidence 55543 3344444445555554443333 222333333334445664 47778889999999999999999999
Q ss_pred HHHHHHHHH
Q 000961 760 DVAERLAAE 768 (1208)
Q Consensus 760 ~~a~~l~~~ 768 (1208)
+++.+|+.+
T Consensus 738 ~~C~~lLi~ 746 (794)
T KOG0276|consen 738 EECLELLIS 746 (794)
T ss_pred HHHHHHHHh
Confidence 999999986
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-37 Score=313.52 Aligned_cols=279 Identities=21% Similarity=0.392 Sum_probs=261.8
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
+.|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.+.-....|..++|+|.|+++|.||-|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 57999999999999999999999999999999999999999999988899999999999999999999999999999986
Q ss_pred C------eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee-CCCEEEEEEC
Q 000961 83 H------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASL 155 (1208)
Q Consensus 83 ~------~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~ 155 (1208)
. +....+.+|.+++.++.|.+|+ .|+++|.|.+..+||+++++.+..+.+|.+.|+++.++| +++.+++|+-
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 5 4567789999999999999866 699999999999999999999999999999999999999 8899999999
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~ 235 (1208)
|++.++||++... ....+.+|+..|+++.|+|+|.-+++|++|++.++||++.
T Consensus 208 D~~aklWD~R~~~---------------------------c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQ---------------------------CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ccceeeeeccCcc---------------------------eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 9999999998754 3458999999999999999999999999999999999999
Q ss_pred CceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 236 ~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
.+...+..-.....+|++++||..|++|.+|..|.++.+||.-+++.+..+.+|..+|.++..+|||..+++|+
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence 88765666556677899999999999999999999999999999999999999999999999999999999998
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=329.55 Aligned_cols=232 Identities=26% Similarity=0.451 Sum_probs=213.8
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEECCCCe
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSRT 126 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s~~ 126 (1208)
+.+.||..+.|+.++..|+||+.+|.++||+..+...+.++.+|...|.++.|+|. +..++||+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56789999999999999999999999999999999999999999999999999997 5689999999999999999999
Q ss_pred EEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCC
Q 000961 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (1208)
Q Consensus 127 ~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 206 (1208)
++..+.+|...|..++|||+|++|+|++.|.+-++||+++..... ..+||..+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL---------------------------~QEGHs~~ 305 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL---------------------------LQEGHSKG 305 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH---------------------------hhcccccc
Confidence 999999999999999999999999999999999999999865432 56799999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 000961 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 207 V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~ 286 (1208)
|.+++|+|||.++++|+.|..-+|||++++.+ +..+.+|..+|.++.|+|+|..|++||.|++++|||++....+.++
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec
Confidence 99999999999999999999999999999998 8899999999999999999999999999999999999998888888
Q ss_pred ecCCCCEEEEEEeC-CCCEEEEEE
Q 000961 287 RREHDRFWILASHP-EMNLLAAGH 309 (1208)
Q Consensus 287 ~~~~~~i~~la~sp-~~~~la~g~ 309 (1208)
..|.+-|+.+.++| .|.+|++++
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ccccchhhheEecccCCeEEEEcc
Confidence 88777777777766 444555544
No 20
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=324.84 Aligned_cols=409 Identities=17% Similarity=0.270 Sum_probs=333.7
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
+-+|.||...|+++.|+..|..|++|+.|+.|.+||+-...-+.++.+|+..|+..-|..+.+++++.+.|+.|++||++
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 45789999999999999999999999999999999998888889999999999999999988999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC------------------------------------
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR------------------------------------ 125 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~------------------------------------ 125 (1208)
+..|..+.-.|.+.|..+++++ +.+++++.|+.+++|++...
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred cceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 9999999999999999999998 68999999999999998100
Q ss_pred ----------------------------------------------------------------------------eE--
Q 000961 126 ----------------------------------------------------------------------------TC-- 127 (1208)
Q Consensus 126 ----------------------------------------------------------------------------~~-- 127 (1208)
..
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 00
Q ss_pred ----------E------------------EEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcce
Q 000961 128 ----------I------------------SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (1208)
Q Consensus 128 ----------i------------------~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~ 179 (1208)
. -.+.+|...|.+++++.+...+++|+ .+.+.+|+..+.+...
T Consensus 338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciR-------- 408 (888)
T KOG0306|consen 338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIR-------- 408 (888)
T ss_pred EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeE--------
Confidence 0 01224555666666665554444443 5567777766544321
Q ss_pred eeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
++ ..+.+.+..|-|.++++++|...|.+.+||+.+... +.+.+.|.+.|++++.+||
T Consensus 409 -------------------Ti--~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l--~Eti~AHdgaIWsi~~~pD 465 (888)
T KOG0306|consen 409 -------------------TI--TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL--VETIRAHDGAIWSISLSPD 465 (888)
T ss_pred -------------------Ee--ccccEEEEEecCCCceEEEeccCCceEEEEeehhhh--hhhhhccccceeeeeecCC
Confidence 22 234788899999999999999999999999999887 7788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCC-----CeeEEEee-------cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEe
Q 000961 260 QDIIVSNSEDKSIRVWDVTK-----RTGVQTFR-------REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (1208)
Q Consensus 260 g~~l~sgs~dg~I~vwd~~~-----~~~~~~~~-------~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~ 327 (1208)
+..+++||.|.+|++||..- +.....+. .-.+.+.++.+||||+++|++-
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL------------------ 527 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL------------------ 527 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe------------------
Confidence 99999999999999999641 21111111 1345689999999999999886
Q ss_pred cCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCccc
Q 000961 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV 407 (1208)
Q Consensus 328 ~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~ 407 (1208)
-|+++++|-+++-+. .+++ .|| .-+|.++..|||++.++. ++.|..|++|-++- |.|...
T Consensus 528 --------LdnTVkVyflDtlKF--flsL--YGH---kLPV~smDIS~DSklivT--gSADKnVKiWGLdF---GDCHKS 587 (888)
T KOG0306|consen 528 --------LDNTVKVYFLDTLKF--FLSL--YGH---KLPVLSMDISPDSKLIVT--GSADKNVKIWGLDF---GDCHKS 587 (888)
T ss_pred --------ccCeEEEEEecceee--eeee--ccc---ccceeEEeccCCcCeEEe--ccCCCceEEecccc---chhhhh
Confidence 367778887776443 2233 344 339999999999996654 44578999998875 555557
Q ss_pred ccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-CceeeeecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEcCCC
Q 000961 408 QDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQR 482 (1208)
Q Consensus 408 ~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl~~~ 482 (1208)
+-+|.+.|.++.|.|+..++.+++.|+.|+-||-. -+.++++.+|. .|.+++.+|+|.+++++ |.+|++|.-...
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 78999999999999999999999999999999988 67888888877 99999999999999885 799999986543
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-35 Score=294.66 Aligned_cols=284 Identities=25% Similarity=0.433 Sum_probs=244.1
Q ss_pred ceEeecCCCCEEEEEEeCC-CCEEEEEecCCeEEEEECC-----CCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeE
Q 000961 2 LTKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYR-----MGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspd-g~~Lasg~~dg~I~iWd~~-----~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1208)
.-++++|++.|+.++..+. ...+++++.|.+|.+|++. .|..++.+++|...|..+..+++|++.++++.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 3478999999999999996 5678888999999999864 578899999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCEEEEEEeeC--CCEEE
Q 000961 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH--NHYVMCASFHPK--EDLVV 151 (1208)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h--~~~V~~l~~~p~--~~~l~ 151 (1208)
++||+.+++....|.+|...|.+++|++|+..|++||.|.+|++||.... +..++..+ .+.|.|+.|+|+ ..+|+
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999998654 44444433 789999999998 58999
Q ss_pred EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 000961 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1208)
Q Consensus 152 s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iw 231 (1208)
+++.|++|++||+++.+... .+.+|.+.++.+++||||.++++|+.||.+.+|
T Consensus 167 s~s~DktvKvWnl~~~~l~~---------------------------~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRT---------------------------TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLW 219 (315)
T ss_pred EccCCceEEEEccCCcchhh---------------------------ccccccccEEEEEECCCCCEEecCCCCceEEEE
Confidence 99999999999999876543 567899999999999999999999999999999
Q ss_pred ECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC---------CCCEEEEEEeCCC
Q 000961 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE---------HDRFWILASHPEM 302 (1208)
Q Consensus 232 d~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~---------~~~i~~la~sp~~ 302 (1208)
|++.++. +.. .+|...|.+++|+|+.-.|+.+... .|+|||+.++..+..++.. .....+++|+++|
T Consensus 220 dL~~~k~--lys-l~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG 295 (315)
T KOG0279|consen 220 DLNEGKN--LYS-LEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG 295 (315)
T ss_pred EccCCce--eEe-ccCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC
Confidence 9999996 444 4578999999999998777766554 5999999998887765522 2235678899999
Q ss_pred CEEEEEE-CCCeeeEe
Q 000961 303 NLLAAGH-DSGMIVFK 317 (1208)
Q Consensus 303 ~~la~g~-~~gi~v~~ 317 (1208)
..|.+|. ++.+.+|.
T Consensus 296 ~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQ 311 (315)
T ss_pred cEEEeeecCCcEEEEE
Confidence 8888885 33344444
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-34 Score=290.34 Aligned_cols=297 Identities=21% Similarity=0.371 Sum_probs=249.5
Q ss_pred eEEEEecccccCEEEEEEEcCC-CEEEEEECCCeEEEEECC-----CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYK-----MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ 115 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~-----~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg 115 (1208)
.+..++++|++.|+.++..+.+ ..+++++.|.++.+|++. .|..++.+.||+..|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 3456788999999999999874 488899999999999875 4678899999999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 116 TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 116 ~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
++++||+.+++..+.+.+|...|++++|+|+.+.+++|+.|.+|.+|++.+..+.
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~------------------------- 140 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY------------------------- 140 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-------------------------
Confidence 9999999999999999999999999999999999999999999999998763321
Q ss_pred EEEEEeccCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000961 196 VKYVLEGHDRGVNWAAFHPT--LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIR 273 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp~--g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~ 273 (1208)
...-..+...|+|+.|+|+ .++|++++.|++|++||+++-+. ...+.+|++.++.+++||||.++++|+.||.+.
T Consensus 141 -t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 141 -TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred -EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 1122233788999999998 78999999999999999999887 778899999999999999999999999999999
Q ss_pred EEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 274 VWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 274 vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
+||+..++.+..+. +...|.+++|+|+...|+.+.+.++++|+++.. ..+..
T Consensus 218 LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~---------------------------~~v~~ 269 (315)
T KOG0279|consen 218 LWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESK---------------------------AVVEE 269 (315)
T ss_pred EEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccch---------------------------hhhhh
Confidence 99999999988765 778899999999999999988766665555443 33332
Q ss_pred EeecCCCCC---CCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 354 IPIRRPGST---SLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 354 ~~~~~~~~~---~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
+.++..+.. . .....+++|++||..++. +..++.|++|.+.
T Consensus 270 l~~d~~g~s~~~~-~~~clslaws~dG~tLf~--g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 LKLDGIGPSSKAG-DPICLSLAWSADGQTLFA--GYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccccC-CcEEEEEEEcCCCcEEEe--eecCCcEEEEEee
Confidence 222222210 0 014466799999998754 4457899999875
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.7e-34 Score=287.88 Aligned_cols=287 Identities=20% Similarity=0.340 Sum_probs=258.8
Q ss_pred EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000961 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1208)
.+++++|.+.|.++.|++|++++++++.||.+.|||.-+....+.+.-....|..++|+|.++++++|+.|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 37789999999999999999999999999999999999988888888889999999999999999999999999999998
Q ss_pred CC------eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEE
Q 000961 124 SR------TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1208)
Q Consensus 124 s~------~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1208)
+. +..+.+.+|.+++.|+.|.+ ...|+++|.|.+..+||+++++..
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~--------------------------- 179 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQT--------------------------- 179 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEE---------------------------
Confidence 65 45567899999999999997 467999999999999999986643
Q ss_pred EEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000961 198 YVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 198 ~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd 276 (1208)
..+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.. ++++.+|...|.++.|+|+|.-+++|+.|++.|+||
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c--~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC--VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce--eEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 37789999999999999 999999999999999999999987 999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeecCC--CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeE
Q 000961 277 VTKRTGVQTFRREH--DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (1208)
Q Consensus 277 ~~~~~~~~~~~~~~--~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~ 354 (1208)
++..+.+..+.... .+|++++||..|++|.+|. .|..+.+||.-.++....+
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy--------------------------~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY--------------------------DDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeee--------------------------cCCceeEeeccccceEEEe
Confidence 99999888887543 5799999999999999987 4778889999888776655
Q ss_pred eecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 355 PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 355 ~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
. || ...|+++..+|||. ++++++-|..++||.
T Consensus 312 ~----GH---eNRvScl~~s~DG~--av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 A----GH---ENRVSCLGVSPDGM--AVATGSWDSTLRIWA 343 (343)
T ss_pred e----cc---CCeeEEEEECCCCc--EEEecchhHheeecC
Confidence 4 44 34999999999997 557788889999983
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-35 Score=305.26 Aligned_cols=280 Identities=26% Similarity=0.463 Sum_probs=263.6
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
.+++.+|...|+.+-|||+...+++++.|++|++||+.+|++...+++|...|..|+|+..|+++++++.|-.+++||..
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999899999998
Q ss_pred C-CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 82 M-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 82 ~-~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
+ .+++..+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++-++.++.+|+..|..+..+.||..+++++.|.+|+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence 6 678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC---------------CCEEEEEeCC
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT---------------LPLIVSGADD 225 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---------------g~~L~sgs~d 225 (1208)
+|-+.+...+ ..+..|..+|.+++|-|. ++++.+++.|
T Consensus 261 vW~~~t~~~k---------------------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 261 VWVVATKQCK---------------------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred EEEeccchhh---------------------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 9998875433 256789999999999762 3589999999
Q ss_pred CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEE
Q 000961 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLL 305 (1208)
Q Consensus 226 g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~l 305 (1208)
++|++||+.++.+ +.++.+|.+.|..++|+|.|++|+++..|+++++||+.++++..++..|..-++++.|+.+..++
T Consensus 314 ktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 314 KTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred ceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 9999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEC
Q 000961 306 AAGHD 310 (1208)
Q Consensus 306 a~g~~ 310 (1208)
++|+-
T Consensus 392 vTGsV 396 (406)
T KOG0295|consen 392 VTGSV 396 (406)
T ss_pred Eeccc
Confidence 99873
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-33 Score=303.33 Aligned_cols=324 Identities=19% Similarity=0.324 Sum_probs=279.7
Q ss_pred ecCCCCEEEEEEeCCCC-EEEEEecCCeEEEEECCCC----eEEEEec----------ccccCEEEEEEEcCCCEEEEEE
Q 000961 6 ETKSNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMG----TLIDRFD----------EHDGPVRGVHFHKSQPLFVSGG 70 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~-~Lasg~~dg~I~iWd~~~g----~~i~~l~----------~h~~~V~~l~fsp~~~~Lasgs 70 (1208)
-.|.++|.+.+|+|-.. .+++|+.+...++|++... .....++ ..+..|++++|+.+|..||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999665 8999999999999998641 1111111 1345799999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEE
Q 000961 71 DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150 (1208)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l 150 (1208)
.||.+++|+. +|..+.++..|.++|.++.|+..|.+|++++.|+++.+||..+++..+.+.-|..+-..+.|-.+ +.+
T Consensus 255 ~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F 332 (524)
T KOG0273|consen 255 EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEF 332 (524)
T ss_pred cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceE
Confidence 9999999996 58888999999999999999999999999999999999999999999999999888788899754 579
Q ss_pred EEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 000961 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230 (1208)
Q Consensus 151 ~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~i 230 (1208)
++++.||.|+|+.+...+.. ..+.+|.+.|+++.|+|.|.+|+++++|++++|
T Consensus 333 ~ts~td~~i~V~kv~~~~P~---------------------------~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPV---------------------------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKI 385 (524)
T ss_pred eecCCCceEEEEEecCCCcc---------------------------eeeecccCceEEEEECCCCceEEEecCCCeeEe
Confidence 99999999999998764432 367789999999999999999999999999999
Q ss_pred EECCCCceeEEEeecCcCCCeEEEEEccCC---------CEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCC
Q 000961 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAKQ---------DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 231 wd~~~~~~~~~~~l~~h~~~V~~l~~sp~g---------~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
|++..... ...+..|...|..+.|+|.| ..+++++.|++|++||+..+.++.+|..|..+|++++|+|+
T Consensus 386 Ws~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 386 WSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred eecCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 99988776 88899999999999999964 47999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEE
Q 000961 302 MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (1208)
Q Consensus 302 ~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ll 381 (1208)
|+++|+|+ .|+.|.+|+..+++...... . ...|..++|+.+|..+.
T Consensus 464 g~ylAsGs--------------------------~dg~V~iws~~~~~l~~s~~--~------~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 464 GRYLASGS--------------------------LDGCVHIWSTKTGKLVKSYQ--G------TGGIFELCWNAAGDKLG 509 (524)
T ss_pred CcEEEecC--------------------------CCCeeEeccccchheeEeec--C------CCeEEEEEEcCCCCEEE
Confidence 99999998 47788999999987744322 1 22789999999999876
Q ss_pred EEEecCCCEEEEEEc
Q 000961 382 ICSDVDGGSYELYVI 396 (1208)
Q Consensus 382 v~~~~~~g~v~l~~l 396 (1208)
++.. ++.+.+.++
T Consensus 510 ~~~s--d~~vcvldl 522 (524)
T KOG0273|consen 510 ACAS--DGSVCVLDL 522 (524)
T ss_pred EEec--CCCceEEEe
Confidence 6554 566766654
No 26
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=100.00 E-value=5.4e-32 Score=293.88 Aligned_cols=631 Identities=17% Similarity=0.215 Sum_probs=407.4
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEE-E-------cCCCEEEEEECCCeEEEE
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHF-H-------KSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~f-s-------p~~~~Lasgs~Dg~I~vW 78 (1208)
-|+..|.|+.|+.....+.++ .|..+.+|.-.+......+.-.+.-|....+ - .....|+.++.||.+.+-
T Consensus 12 r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 467788899999888777666 4555666653333222222211111111111 1 123478899999999998
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
+ ++++.-..+..|.+.|.+-.|+|||.-|++++.||.|++|. ++|-...++-....+|.|++|.|+.+.++.+. .+.
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h 167 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGH 167 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCe
Confidence 8 56788888899999999999999999999999999999999 56766666666778999999999987666654 345
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
+.+=.+.... .......|++-|.++.|+|..+++++|+.|-..++||.....
T Consensus 168 ~~IKpL~~n~---------------------------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~- 219 (737)
T KOG1524|consen 168 ISIKPLAANS---------------------------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN- 219 (737)
T ss_pred EEEeeccccc---------------------------ceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-
Confidence 5554443311 123677899999999999999999999999999999987765
Q ss_pred eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 239 ~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l 318 (1208)
+.....|..+|++++|.|+ ..++.+|.+ ++|+= +...+.|..++||+||..+++|+..|.+++..
T Consensus 220 --Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 220 --LFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred --cccCChhccceeeeeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 6677889999999999999 666766653 45521 12345689999999999999999999887654
Q ss_pred CCCcceEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 319 ERERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 319 ~~~~~~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
.-++... .++.-++. ....|.+-|+.++.. .++..+. .+...+ -.-.+++++++ ..+.+|.-.
T Consensus 285 ~ieq~l~--~~n~~~t~~~r~~I~vrdV~~~v~-d~LE~p~--------rv~k~s--L~Y~hLvvaTs---~qvyiys~k 348 (737)
T KOG1524|consen 285 AIEQQLV--SGNLKATSKSRKSITVRDVATGVQ-DILEFPQ--------RVVKFS--LGYGHLVVATS---LQVYIYSEK 348 (737)
T ss_pred eehhhhh--hccceeEeeccceEEeehhhhhHH-HHhhCcc--------ceeeee--eceeEEEEEec---cEEEEEecC
Confidence 3332211 11222222 677788888887654 2222221 344444 33355666666 567777655
Q ss_pred CCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeeeecCCc------ceEEEEEeCCccEEEEe-
Q 000961 398 KDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI------AADAIFYAGTGNLLCRA- 470 (1208)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~------~v~~i~~s~dg~~Las~- 470 (1208)
...+.. ..++....+. +.--....|++.. ..+|.++..+++.......|+ .-..+.++.| .|+..
T Consensus 349 nwntpi---iidgre~tr~-lieq~ek~fli~d--gsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLand--tLaird 420 (737)
T KOG1524|consen 349 NWNTPI---IIDGREDTRN-LIEQGEKYFLILD--GSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLAND--TLAIRD 420 (737)
T ss_pred CccCcE---EEeccccchh-HhhhhhhheEEec--CcEEEEEEecCceecCCCCCCcccccccceeeecccc--eEEeec
Confidence 443321 1222222111 1111122344443 367888888887766666555 1233444443 45443
Q ss_pred ---CCeEEEEEc-CCCeEEEEEeC----CCeeEEEE----CCCCCEEEEEeCCe-EEEEe--------------------
Q 000961 471 ---EDRVVIFDL-QQRLVLGDLQT----PFVKYVVW----SNDMESVALLSKHA-IIIAS-------------------- 517 (1208)
Q Consensus 471 ---dg~v~lwdl-~~~~~l~~~~~----~~v~~v~w----s~dg~~la~~s~~~-i~i~~-------------------- 517 (1208)
...+.+||. .+|+....-.. ..+..++. .++.+.+++.++++ ++|..
T Consensus 421 ~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtL 500 (737)
T KOG1524|consen 421 NADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTL 500 (737)
T ss_pred CCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhh
Confidence 357889998 77776543331 22333333 34556777777765 55532
Q ss_pred ---cCccceeeeecceeeeeeEEecCCeEEEecCCeeeeEecCCceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEc
Q 000961 518 ---KKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVI 594 (1208)
Q Consensus 518 ---~~~~~~~~~~e~~~iks~~wd~~~~~iy~t~~~i~y~l~~g~~g~i~~l~~~~~l~~~~~~~l~~l~r~~~~~~~~l 594 (1208)
.....+|.++++. -..|..++ .+|..++-+.-.+..-+ +..+.+.+.++.+.++.+..-..+|.+..+.+
T Consensus 501 awndttNiLcglqDt~---fsVWy~pn-~vyvDrdiLpkTlierd---t~efgKnpqIvsFvgNqvtirrsdG~LlpisV 573 (737)
T KOG1524|consen 501 AWNDTTNILCGLQDTC---FSVWYYPN-EVYVDRDILPKTLIERD---TTEFGKNPQIVSFVGNQVTIRRSDGALLPISV 573 (737)
T ss_pred hhccccceeeeeccce---EEEEEcCC-cceecccccchhheecc---hhhccCCcceeeeeccEEEEEeccCceEeeec
Confidence 2223333333321 22343211 12222222211111111 12234566788888999888878888877766
Q ss_pred ChhhHHHHHhhcccccccchHHHHHHHhCCChhhhhccccCcchhhHHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHH
Q 000961 595 DATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALR 674 (1208)
Q Consensus 595 d~~e~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~ 674 (1208)
.+ |..+++. ++..+.|+.|+++|+...+..+|..||-.|..
T Consensus 574 ~p--y~~iL~e-------------------------------------~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~ 614 (737)
T KOG1524|consen 574 NP--YPEILHE-------------------------------------YLSSSKWEQAVRLCRFVQEQTMWATLAAVAVR 614 (737)
T ss_pred cc--cHHHHHH-------------------------------------HhccchHHHHHHHHHhccchHHHHHHHHHHHh
Confidence 44 3333221 23345699999999999999999999999999
Q ss_pred cCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHH
Q 000961 675 QGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITAS 754 (1208)
Q Consensus 675 ~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~ 754 (1208)
..+..++|.+|..+.+.++++++--+..-++|..+|++ +.+++|++.||+-++...|....|+.++-
T Consensus 615 ~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~-------------~~l~~G~~~eAe~iLl~~gl~~qav~lni 681 (737)
T KOG1524|consen 615 KHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAE-------------NSLMLGRMLEAETILLHGGLIEQAVGLNI 681 (737)
T ss_pred hccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHH-------------HHHHhccchhhhHHHHhcchHHHhhhhhh
Confidence 99999999999999999999999777777777777766 44555555555555555555555555555
Q ss_pred hcCChHHHHHHHH
Q 000961 755 VHGLQDVAERLAA 767 (1208)
Q Consensus 755 ~~g~~~~a~~l~~ 767 (1208)
....|+.|++|..
T Consensus 682 ~m~nW~RALEl~~ 694 (737)
T KOG1524|consen 682 RMHNWRRALELSQ 694 (737)
T ss_pred hhhhHHHHHHHHH
Confidence 5555555555554
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.7e-34 Score=327.82 Aligned_cols=248 Identities=27% Similarity=0.550 Sum_probs=230.0
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-------------------------------eEEEEeccccc
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-------------------------------TLIDRFDEHDG 52 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g-------------------------------~~i~~l~~h~~ 52 (1208)
++..-...++|..|++|+..||.|..|..|++|.+... ....++-+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 44455678999999999999999999999999997621 12344679999
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT 132 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~ 132 (1208)
||.++.|+|+.++|++++.|++|++|++.+..++..+.||..+|+.+.|+|-|-+++|+|.|++-++|......+.+.+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEE
Q 000961 133 GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212 (1208)
Q Consensus 133 ~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 212 (1208)
+|.+.|.|+.|||+.+++++||.|.+||+||+.++.. ...+.||.++|.+++|
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---------------------------VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---------------------------VRIFTGHKGPVTALAF 585 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCcE---------------------------EEEecCCCCceEEEEE
Confidence 9999999999999999999999999999999987543 3477899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 213 sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
+|+|++|++|+.||.|++||+.+++. +..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+...
T Consensus 586 Sp~Gr~LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 586 SPCGRYLASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCceEeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999987 8899999999999999999999999999999999998653
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.2e-34 Score=295.15 Aligned_cols=276 Identities=25% Similarity=0.469 Sum_probs=247.8
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
+-+.+|.+.|+|+++.|-..|+++|+.|++|.|||+.+|++..++.+|...|+.+++|+..+|+.+++.|+.|+.||++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
.+.++.+.||...|.+++.+|.-..|++|+.|.+++|||+++...+.++.||..+|.++.+.|.+..+++||.|++|++|
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~ 242 (1208)
|+..++.. ..+..|...|.+++.+|....+++++.|. |+-|++..+.. +.
T Consensus 305 Dl~agkt~---------------------------~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f--~~ 354 (460)
T KOG0285|consen 305 DLRAGKTM---------------------------ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF--LQ 354 (460)
T ss_pred eeccCcee---------------------------EeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccch--hh
Confidence 99886643 36778999999999999999999998775 89999999987 77
Q ss_pred eecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC--------CCCEEEEEEeCCCCEEEEEE
Q 000961 243 TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE--------HDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 243 ~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~--------~~~i~~la~sp~~~~la~g~ 309 (1208)
.+.+|...|.+++...|+ ++++|+.+|.+.+||..+|...+..... ...|.+.+|...|..|++|.
T Consensus 355 nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 355 NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 799999999999998775 7889999999999999998766654211 12355555555555555544
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-33 Score=299.12 Aligned_cols=269 Identities=21% Similarity=0.380 Sum_probs=247.6
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1208)
+..|++++|+.+|..||+|..||.++||+ .+|.++.++..|++||.++.|+.+|.+|++++.|+++.+||..++.....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 35799999999999999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 000961 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~ 168 (1208)
+.-|+.+-..+.|-.+. .+++++.||.|+|+.+....++.++.+|.+.|.++.|+|.+.+|+++|.|+++++|+.....
T Consensus 314 f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 98899987888997665 58999999999999999999999999999999999999999999999999999999976533
Q ss_pred cccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC---------EEEEEeCCCcEEEEECCCCcee
Q 000961 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP---------LIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~---------~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
. ...+..|...|..+.|+|+|+ .+++++.|++|++||+..+.+
T Consensus 393 ~---------------------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~- 444 (524)
T KOG0273|consen 393 S---------------------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP- 444 (524)
T ss_pred c---------------------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-
Confidence 2 225778999999999999765 689999999999999999997
Q ss_pred EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 240 ~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
+..+..|..+|++++|+|+|+++++|+.||.|.+|+..+++..+.+.. .+.|..++|+.+|+.+.++.
T Consensus 445 -i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 445 -IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred -eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEe
Confidence 889999999999999999999999999999999999999999988874 45589999999999887765
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4e-32 Score=273.62 Aligned_cols=279 Identities=25% Similarity=0.399 Sum_probs=238.0
Q ss_pred ceEeecCCCCEEEEEEeCC-CCEEEEEecCCeEEEEECCCC---eEEEEe-cccccCEEEEEEEcCCCEEEEEECCCeEE
Q 000961 2 LTKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYRMG---TLIDRF-DEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspd-g~~Lasg~~dg~I~iWd~~~g---~~i~~l-~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~ 76 (1208)
++++++|.++|..++|||- |..||+++.|..|++|+...+ .+...+ .+|+..|++++|+|.|++|++++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 5789999999999999997 889999999999999998743 334444 37999999999999999999999999999
Q ss_pred EEECCC--CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCEEEEEEeeCCCEEE
Q 000961 77 VWNYKM--HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYVMCASFHPKEDLVV 151 (1208)
Q Consensus 77 vWd~~~--~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~---~~i~~l~~h~~~V~~l~~~p~~~~l~ 151 (1208)
||.-.. .+++.++.||...|.+++|+++|.+||+++.|..|-||....+ .++..++.|...|..+.|||...+|+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 998653 4789999999999999999999999999999999999998743 67889999999999999999999999
Q ss_pred EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 000961 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1208)
Q Consensus 152 s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iw 231 (1208)
++|.|.+|++|+-.. ..+..+...+.+|...|.+++|+|.|..|+++++|++|+||
T Consensus 167 S~SYDnTIk~~~~~~------------------------dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDED------------------------DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred EeccCCeEEEEeecC------------------------CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 999999999998652 12455677899999999999999999999999999999999
Q ss_pred ECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee------E-EEeecCCCCEEEEEEeCC-CC
Q 000961 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG------V-QTFRREHDRFWILASHPE-MN 303 (1208)
Q Consensus 232 d~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~------~-~~~~~~~~~i~~la~sp~-~~ 303 (1208)
.....- ...|+..++.+.|. ...|++++.|+.|++|.-...-. + ..-..|...|.++.|.|. .+
T Consensus 223 ~~~~~~------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 223 RLYTDL------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSN 294 (312)
T ss_pred eeccCc------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCC
Confidence 865322 23477889999998 45799999999999997654211 1 122356678999999994 67
Q ss_pred EEEEEECCC
Q 000961 304 LLAAGHDSG 312 (1208)
Q Consensus 304 ~la~g~~~g 312 (1208)
+|++|+++|
T Consensus 295 ~L~s~~DDG 303 (312)
T KOG0645|consen 295 RLASGGDDG 303 (312)
T ss_pred ceeecCCCc
Confidence 788887644
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=305.73 Aligned_cols=271 Identities=26% Similarity=0.463 Sum_probs=242.0
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
..|..|.|.|+|+.|++|+..|.+.+|+..+......+..|+.+|+++.|++++.+++||+.+|.|++|+..- ..+..+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHh
Confidence 4788999999999999999999999999755444455678999999999999999999999999999999753 444445
Q ss_pred ccCC-CCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 000961 90 LGHL-DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1208)
Q Consensus 90 ~~h~-~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~ 168 (1208)
.+|. ..|++++|+|+...++++|+||+|+|||....+....+.+|.-.|.|+.|||...+|++++.|..|++||.+++.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 5554 899999999999999999999999999999888888999999999999999999999999999999999998866
Q ss_pred cccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcC
Q 000961 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248 (1208)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~ 248 (1208)
... .+.+|...|..+.|+|++++|++++.|..++++|+++.+. +..+++|.
T Consensus 256 cl~---------------------------tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--l~~~r~Hk 306 (464)
T KOG0284|consen 256 CLA---------------------------TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--LFTYRGHK 306 (464)
T ss_pred hhh---------------------------hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--HHHhhcch
Confidence 443 6778999999999999999999999999999999997665 88999999
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEee-cCCCCEEEEEEeCCCCEEEEEEC
Q 000961 249 NNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 249 ~~V~~l~~sp-~g~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
..|+++.||| ...+|.+|+.||.|..|.+...+++..+. .|...||+++|+|-|.+|++|+.
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence 9999999999 66788999999999999998666665544 56778999999999999999884
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=272.23 Aligned_cols=278 Identities=17% Similarity=0.373 Sum_probs=244.6
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe--EEEEEccCCCCEEEE
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTV 99 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~--~~~~l~~h~~~I~~v 99 (1208)
-+|++++.|.+|++|...+|.+..++...++.|+.+...|+++.||+++. ..|++||+.++. ++.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47899999999999999999999999988999999999999999999887 589999998764 688999999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcce
Q 000961 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (1208)
Q Consensus 100 ~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~ 179 (1208)
.|..+|+++++||+||+++|||+++..+.+.+. |..+|+++..+|+...|++|..+|.|++||+.......
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~-------- 160 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH-------- 160 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--------
Confidence 999999999999999999999999966666555 78999999999999999999999999999998743221
Q ss_pred eeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeEEEeecCcCCCeEEEE
Q 000961 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK----AWEVDTLRGHMNNVSCVM 255 (1208)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~----~~~~~~l~~h~~~V~~l~ 255 (1208)
.........|.++...|||.+++.+...|..++|++-+.. ..++..++.|.+.+..+.
T Consensus 161 ------------------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 161 ------------------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred ------------------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 1223344678999999999999999999999999987643 235677889999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCC-eeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEE
Q 000961 256 FHAKQDIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (1208)
Q Consensus 256 ~sp~g~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~ 334 (1208)
+||++++|+++|.|.+++||+..+. +....+.+++..+|..+||.||.+|++|+
T Consensus 223 lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTas------------------------- 277 (311)
T KOG0315|consen 223 LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTAS------------------------- 277 (311)
T ss_pred ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecC-------------------------
Confidence 9999999999999999999999887 55566788888999999999999999998
Q ss_pred EeCCeEEEEEccCCcceee
Q 000961 335 AKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 335 ~~d~~i~v~d~~~~~~~~~ 353 (1208)
.|+.+++|++..++.+..
T Consensus 278 -sd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 278 -SDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred -CCCceeecccccCceeee
Confidence 477888999988876443
No 33
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-31 Score=297.49 Aligned_cols=507 Identities=16% Similarity=0.226 Sum_probs=355.7
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEe--cCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC--CCeEEEEEC
Q 000961 5 FETKSNRVKGLSFHSKRPWILASL--HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD--DYKIKVWNY 80 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg~~Lasg~--~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~--Dg~I~vWd~ 80 (1208)
+..|..+++|++||++|+|+|+|- ....++||++..-..+..|..|+-.|+|++|+|.++|+++.|. |-.|.+||+
T Consensus 74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dW 153 (1080)
T KOG1408|consen 74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDW 153 (1080)
T ss_pred ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhh
Confidence 446778999999999999999984 6778999999998899999999999999999999999998774 567889988
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE-------------------------------
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS------------------------------- 129 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~------------------------------- 129 (1208)
+..-.... ..-...|..++|+.|+.++++++ ...|++|.++.++...
T Consensus 154 r~N~~~as-nkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA 231 (1080)
T KOG1408|consen 154 RVNSSGAS-NKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA 231 (1080)
T ss_pred hhcccccc-cccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence 74332222 22456799999999999999987 5789999887543110
Q ss_pred ----EE--ecC-----------------CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccc
Q 000961 130 ----VL--TGH-----------------NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNT 186 (1208)
Q Consensus 130 ----~l--~~h-----------------~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~ 186 (1208)
.+ .|| +....|++.+ .++|++|+.+|+|++|+..++......|....+.....+.
T Consensus 232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~ 309 (1080)
T KOG1408|consen 232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL 309 (1080)
T ss_pred cceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhc
Confidence 00 011 0112344443 5799999999999999998877665554433222111000
Q ss_pred cccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEeecCcCCCeEEEEEccC------
Q 000961 187 DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAK------ 259 (1208)
Q Consensus 187 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~-~~~~~l~~h~~~V~~l~~sp~------ 259 (1208)
.. ........-.+.-.....+.|+|....|.+...|..+++||+++-+. -....+--|..-|+.+.--|-
T Consensus 310 ~q---~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~ 386 (1080)
T KOG1408|consen 310 SQ---PEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPT 386 (1080)
T ss_pred cc---ccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcc
Confidence 00 00000001111223345789999999999999999999999987543 124455567777776655441
Q ss_pred -----CCEEEEEeCCCcEEEEeCCCCeeEEEee-------------------------------------cCCCCEEEEE
Q 000961 260 -----QDIIVSNSEDKSIRVWDVTKRTGVQTFR-------------------------------------REHDRFWILA 297 (1208)
Q Consensus 260 -----g~~l~sgs~dg~I~vwd~~~~~~~~~~~-------------------------------------~~~~~i~~la 297 (1208)
...++++++|++||+||+..+..-+.++ ...-.+.+++
T Consensus 387 ~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~ 466 (1080)
T KOG1408|consen 387 AACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA 466 (1080)
T ss_pred cccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE
Confidence 2358999999999999987532211111 1113489999
Q ss_pred EeCCCCEEEEEECC-CeeeEeeCCCcc------------eEEe-----cCCEEEEE-eCCeEEEEEccCCcceeeEeecC
Q 000961 298 SHPEMNLLAAGHDS-GMIVFKLERERP------------AFAV-----SGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRR 358 (1208)
Q Consensus 298 ~sp~~~~la~g~~~-gi~v~~l~~~~~------------~~s~-----~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~ 358 (1208)
.+|+|+.||+|... .+.++++..-+. ++.. ....|+.+ .|+-|++||....-. .+-++..
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-l~qtld~ 545 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-LVQTLDG 545 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-hhhhhcc
Confidence 99999999999654 467887765432 1111 12344555 899999999876432 2333433
Q ss_pred CCCCCCCcCCeEEEEcCCC--CEEEEEEecCCCEEEEEEccC-CCCCCCc--ccccccCCceEEEEEEeCCcEEEEEcCC
Q 000961 359 PGSTSLNQSPRTLSYSPTE--NAVLICSDVDGGSYELYVIPK-DSIGRGD--SVQDAKKGLGGSAIFIARNRFAVLDKSS 433 (1208)
Q Consensus 359 ~~~~~~~~~i~~l~~spdg--~~llv~~~~~~g~v~l~~l~~-~~~~~~~--~~~~~~~~~i~~~~fs~d~~~l~~~~~d 433 (1208)
+ ...|+++.|.-.| ..++.++. |..+ +|+... ...+... ..-......+..++..|..+++++++.|
T Consensus 546 H-----SssITsvKFa~~gln~~MiscGA--Dksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 546 H-----SSSITSVKFACNGLNRKMISCGA--DKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred c-----ccceeEEEEeecCCceEEEeccC--chhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 2 3399999998777 33443333 3333 333332 2222221 0111223467789999999999999999
Q ss_pred CEEEEEecC-CceeeeecCCc----ceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEeC--CCeeEEEECCCCCE
Q 000961 434 NQVLVKNLK-NEVVKKSILPI----AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMES 504 (1208)
Q Consensus 434 g~I~Iwdl~-~~~~~~l~~~~----~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~~--~~v~~v~ws~dg~~ 504 (1208)
..|+||+++ ++.++.+++.. ....+...|.|.+++++ |.++.+||..+|++++...+ .-|+.+.|++|.++
T Consensus 618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence 999999999 77888888654 67788999999999984 99999999999999999887 56999999999999
Q ss_pred EEEEeCCe-EEEEecCccceeeee
Q 000961 505 VALLSKHA-IIIASKKLVHQCTLH 527 (1208)
Q Consensus 505 la~~s~~~-i~i~~~~~~~~~~~~ 527 (1208)
|++.+.|+ |+||...++.+..+.
T Consensus 698 lISvsgDgCIFvW~lp~~mii~m~ 721 (1080)
T KOG1408|consen 698 LISVSGDGCIFVWKLPLTMIIRMV 721 (1080)
T ss_pred heeecCCceEEEEECchhHhHHHH
Confidence 99999988 999998887766553
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.9e-32 Score=282.45 Aligned_cols=307 Identities=17% Similarity=0.290 Sum_probs=261.6
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
++.|..|+..|.+++.+|+.+++++|+.|..-.||+..+|.....+.+|+..|+++.||.+|.+||||+-+|.|.||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
++.....+...-..|.=+.|||.+..|+.|+.||.+.+|.+.++...+.+.||+.++++-.|.|+|+.++++..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 99998888777788999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EECCCCccccccCCC-----cceeeccccc-----------cccccccceEEEEEe--------ccCCCeEE---EEEcC
Q 000961 162 WDIGALRKKTVSPAD-----DILRLSQMNT-----------DLFGGVDAVVKYVLE--------GHDRGVNW---AAFHP 214 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~-----~~~~~~~~~~-----------~~~~~~~~~~~~~~~--------~h~~~V~~---l~~sp 214 (1208)
|+..++......... ..+....... .+.+...+.+..... .+...+.+ +.++.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 999988765443211 1111111111 122222333333333 34444444 44555
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEE
Q 000961 215 TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW 294 (1208)
Q Consensus 215 ~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~ 294 (1208)
.-++.++|+-||+|.|||+...+ ++..-.|...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred ccchhhcccccceEEEEecccch---hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence 66789999999999999999877 566667889999999998 78899999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCC
Q 000961 295 ILASHPEMNLLAAGHDSG 312 (1208)
Q Consensus 295 ~la~sp~~~~la~g~~~g 312 (1208)
.++.+|+.++++++++++
T Consensus 373 ~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDN 390 (399)
T ss_pred EEEEcCCCcEEEEecCCC
Confidence 999999999999887643
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.6e-31 Score=298.10 Aligned_cols=282 Identities=31% Similarity=0.581 Sum_probs=257.4
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
++++|++|.++|++++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++++++++.||.|++||+
T Consensus 1 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred CchHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 46788999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
.+++.+..+..|...|.++.|++++.++++++.|+.|++||+.+++....+..|...+.++.|+|++.++++++.|+.|+
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 99888888999999999999999988888888899999999999999999999999999999999988888888899999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~ 240 (1208)
+||+.+.+.. ..+..|...+.++.|+|+++.+++++.++.|++||+...+.
T Consensus 161 i~d~~~~~~~---------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-- 211 (289)
T cd00200 161 LWDLRTGKCV---------------------------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-- 211 (289)
T ss_pred EEEccccccc---------------------------eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce--
Confidence 9999754322 24457888999999999999999999999999999998775
Q ss_pred EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECC
Q 000961 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS 311 (1208)
Q Consensus 241 ~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~ 311 (1208)
+..+..|...+.++.|+|++.++++++.||.|++||+.+++....+..+...+.+++|+|+++++++++.+
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 66676888999999999999889988889999999999999998888888899999999999999888753
No 36
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.8e-30 Score=283.61 Aligned_cols=684 Identities=11% Similarity=0.120 Sum_probs=443.5
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC---------------eEEEEecccccCEEEEEEEcCCCEEEEEECCC
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---------------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY 73 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g---------------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg 73 (1208)
.....|++|+....++|+|+.||.++|-.+.+. ..-+++.+|++.|.-+.|+.+.+.|-|...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456789999999999999999999999987543 12356789999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEE--ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEE
Q 000961 74 KIKVWNYKMHRCLFTL--LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151 (1208)
Q Consensus 74 ~I~vWd~~~~~~~~~l--~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~ 151 (1208)
.|.||-+-.+.....+ ....+.|.+++|+.||..|.....||.|.+=.++..+. ....-.......+.|++|...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecccHHHHH
Confidence 9999998877654433 23566899999999999999999999999888764432 22111122345788999999888
Q ss_pred EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEE--------cCCCCEEEEEe
Q 000961 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF--------HPTLPLIVSGA 223 (1208)
Q Consensus 152 s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--------sp~g~~L~sgs 223 (1208)
.+-..|.+.++|..+.-.......- .+. ..-.+......|..+.| -|+.+.|+++.
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c-~Vn---------------~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDC-EVN---------------GTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhce-EEe---------------eeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 8888999999998764322111000 000 00011111222344444 35889999999
Q ss_pred CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC---------cEEEEeCCCCeeEEEeecCCCCEE
Q 000961 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK---------SIRVWDVTKRTGVQTFRREHDRFW 294 (1208)
Q Consensus 224 ~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg---------~I~vwd~~~~~~~~~~~~~~~~i~ 294 (1208)
.+|.+.+.+-.+.... + +....-.+....|+++|..|++++.+. .|.+|. .-|..+.+++.+...|+
T Consensus 237 ~nGr~QiMR~eND~~P-v--v~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It 312 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEP-V--VVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCIT 312 (1189)
T ss_pred cCceehhhhhcCCCCC-e--EEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceee
Confidence 9999999876665532 1 122236788999999999999988643 466665 35788889999999999
Q ss_pred EEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEE------eCCeEEEEEccCCcceeeEeecCCCCCCCCcCC
Q 000961 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA------KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSP 368 (1208)
Q Consensus 295 ~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i 368 (1208)
+++|-..|-.+|.+-++.+.+-++ ++...|....+.++++ -...|.+||..+.+.. +..+. ..
T Consensus 313 ~lsWEg~gLriA~AvdsfiyfanI-RP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~-vK~V~---------~~ 381 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIAVDSFIYFANI-RPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKT-VKTVT---------HF 381 (1189)
T ss_pred eeEEcCCceEEEEEecceEEEEee-cccceEEEeeeEEEEEEccCCCcceEEEEEecccChhh-hhhhc---------ce
Confidence 999999999999888766554444 3444566666666666 2346889999886542 11111 34
Q ss_pred eEEEEcCCCCEEEEEEecCCCEEEEE----------Ecc-CCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEE
Q 000961 369 RTLSYSPTENAVLICSDVDGGSYELY----------VIP-KDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVL 437 (1208)
Q Consensus 369 ~~l~~spdg~~llv~~~~~~g~v~l~----------~l~-~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~ 437 (1208)
.+++++.+.-.+ ....+++.+.-+ .+. .++.|. +++.....|.-.-..-++.+++.++ ...+.
T Consensus 382 ~~~a~~~ehCvL--~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT---~lD~kytdirP~Fv~vn~~~vviAS-~e~~~ 455 (1189)
T KOG2041|consen 382 ENMAFYREHCVL--INRQDDGVIPEYSTLENRSRVYFLQLCNSIGT---SLDYKYTDIRPKFVCVNGICVVIAS-EERYF 455 (1189)
T ss_pred eehheecccEEE--EeccccCCCcchhhhhcccceEEEeeecccCC---cCCCCcceeeeeEEEecceEEEEec-cccEE
Confidence 456665543322 223333333322 110 011111 1222222222222223556677776 45678
Q ss_pred EEecCC----cee-----------------------------eeecCCc-ceEEEEEeCCccEEEEeCCeEEEEEcCCCe
Q 000961 438 VKNLKN----EVV-----------------------------KKSILPI-AADAIFYAGTGNLLCRAEDRVVIFDLQQRL 483 (1208)
Q Consensus 438 Iwdl~~----~~~-----------------------------~~l~~~~-~v~~i~~s~dg~~Las~dg~v~lwdl~~~~ 483 (1208)
+|.... ..+ +++.+.. +|..++.|..--+++...|.|+-|.+.+.-
T Consensus 456 iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sdk~l~vareSG~I~rySl~nv~ 535 (1189)
T KOG2041|consen 456 IWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISDKFLMVARESGGIYRYSLNNVV 535 (1189)
T ss_pred EEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecceEEEEEeccCceEEEEeccee
Confidence 887431 000 1111111 455555554422333357999999999888
Q ss_pred EEEEEeC-CCeeEEEECCCCCEEEEEeCCeE-EEEec----Cccceeeee--cceeeeeeEEecCCeEEEe-cCCeeeeE
Q 000961 484 VLGDLQT-PFVKYVVWSNDMESVALLSKHAI-IIASK----KLVHQCTLH--ETIRVKSGAWDDNGVFIYT-TLNHIKYC 554 (1208)
Q Consensus 484 ~l~~~~~-~~v~~v~ws~dg~~la~~s~~~i-~i~~~----~~~~~~~~~--e~~~iks~~wd~~~~~iy~-t~~~i~y~ 554 (1208)
....... ..+.++..+.+.+++|+..--++ .+.+. +-.++.-+. |...|....|+.++-.++. ....-.|+
T Consensus 536 l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyi 615 (1189)
T KOG2041|consen 536 LTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYI 615 (1189)
T ss_pred eeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEE
Confidence 8877776 66899999999999998887663 33322 233333222 2223444445433322222 22233344
Q ss_pred ecCCceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEcChhhHHHHHhhcccccccchHHHHHHHhCCChhhhhcccc
Q 000961 555 LPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVK 634 (1208)
Q Consensus 555 l~~g~~g~i~~l~~~~~l~~~~~~~l~~l~r~~~~~~~~ld~~e~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~ 634 (1208)
+.+.+. .-...++| -.|+..+..+..+.|| +++....+.+. ..|+++..+.-
T Consensus 616 frgndp---------eEp~s~sG--yIc~FedLeitsVlld-----~Il~~pE~pnk--~~ii~~~iksl---------- 667 (1189)
T KOG2041|consen 616 FRGNDP---------EEPSSVSG--YICLFEDLEITSVLLD-----KILLTPENPNK--TCIIEVMIKSL---------- 667 (1189)
T ss_pred ecCcCc---------cccccccc--eEEEeeceEEEEEEHh-----hHhcCcCCCCc--ceEEEEEehhh----------
Confidence 444332 11111111 2244445555555553 44443333332 11111111110
Q ss_pred CcchhhHHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHH
Q 000961 635 DERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIA 714 (1208)
Q Consensus 635 ~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~ 714 (1208)
..-.-.++.-.++.|.++++..++|++|+.||+.|+....++.||.+|.+++||.++-++ .+|+++....
T Consensus 668 ---rD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~v-------krl~~i~s~~ 737 (1189)
T KOG2041|consen 668 ---RDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLV-------KRLRTIHSKE 737 (1189)
T ss_pred ---hhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHH-------HHhhhhhhHH
Confidence 011122445558999999999999999999999999999999999999999999999999 8888876644
Q ss_pred HHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCCC
Q 000961 715 EVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVP 774 (1208)
Q Consensus 715 ~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~~ 774 (1208)
.. ++++..|.|.|+||+++|+++.|-++|++|++++|+|..+.+|....+.+.+
T Consensus 738 ~q------~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~d 791 (1189)
T KOG2041|consen 738 QQ------RAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDD 791 (1189)
T ss_pred HH------hHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcc
Confidence 43 4688899999999999999999999999999999999999999998655443
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.4e-32 Score=280.23 Aligned_cols=301 Identities=25% Similarity=0.461 Sum_probs=260.7
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
++.+.+++|.+.|+|+++.|.+.+|++|+.|++|+|||+.+|+...++.||...|+.+++|+-.+++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
+...+.++.+.||-+.|.|+..+|.-+.|++|+.|.++||||+++... ...+.
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---------------------------V~~l~ 274 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---------------------------VHVLS 274 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce---------------------------EEEec
Confidence 999999999999999999999999999999999999999999988443 34788
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 202 ~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
||..+|..+.+.|..+.+++|+.|++|++||+..++. ..++..|...|.+++.+|....+++++.|. |+-|++..+.
T Consensus 275 GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~ 351 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGE 351 (460)
T ss_pred CCCCcceeEEeecCCCceEEecCCceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccc
Confidence 9999999999999999999999999999999999997 888999999999999999999999999885 9999999999
Q ss_pred eEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEe-ecCCC
Q 000961 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP-IRRPG 360 (1208)
Q Consensus 282 ~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~-~~~~~ 360 (1208)
.++.+.+|+.-+.+++...|+-+ ++|++ ++.+.+||..+|-..+... ...+|
T Consensus 352 f~~nlsgh~~iintl~~nsD~v~-~~G~d--------------------------ng~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 352 FLQNLSGHNAIINTLSVNSDGVL-VSGGD--------------------------NGSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred hhhccccccceeeeeeeccCceE-EEcCC--------------------------ceEEEEEecCcCcccccccccccCC
Confidence 99999999999999999888754 45554 4456678887765543331 11222
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI 401 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~ 401 (1208)
+..-...|.+.+|...|..++.+ ..|.+|++|.-+...+
T Consensus 405 Sl~sEagI~as~fDktg~rlit~--eadKtIk~~keDe~aT 443 (460)
T KOG0285|consen 405 SLESEAGIFASCFDKTGSRLITG--EADKTIKMYKEDEHAT 443 (460)
T ss_pred ccccccceeEEeecccCceEEec--cCCcceEEEecccccC
Confidence 21113478888999999888654 3578999998776543
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.5e-31 Score=271.62 Aligned_cols=280 Identities=19% Similarity=0.358 Sum_probs=248.5
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEEC-CCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~-~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
..+.+|.+.|..+.|+|+|.++|+|+.|..|.+|++ ...+-...+++|.+.|..+.|.++++.++++|.|.+|+.||.+
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 357899999999999999999999999999999994 4556677888999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
+|++++.+++|.+.|..+.-+.-|. .+.++++|+++++||+++..+++++. ..-.++++.|..+++.+.+|+-|+.|+
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIK 199 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCcee
Confidence 9999999999999999998665565 56688999999999999998888875 346799999999999999999999999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-- 238 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~-- 238 (1208)
+||++... ..+++.||...|+.+..+|+|.++.+-+.|.++++||++....
T Consensus 200 vWd~r~~d---------------------------~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 200 VWDLRKND---------------------------GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred eeccccCc---------------------------ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence 99997644 3568999999999999999999999999999999999875322
Q ss_pred eEEEeecCcCC----CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 239 WEVDTLRGHMN----NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 239 ~~~~~l~~h~~----~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
..+..+.+|.. +...++|+|+++.+.+|+.|..+++||......+..+.+|.+.|..+.|+|...++.+++.
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 12555555543 4567899999999999999999999999999999999999999999999999998887764
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-30 Score=260.89 Aligned_cols=294 Identities=23% Similarity=0.412 Sum_probs=233.9
Q ss_pred EEEEecccccCEEEEEEEcC-CCEEEEEECCCeEEEEECCC---CeEEEEE-ccCCCCEEEEEEcCCCCEEEEEECCCcE
Q 000961 43 LIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKM---HRCLFTL-LGHLDYIRTVQFHHEYPWIVSASDDQTI 117 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~---~~~~~~l-~~h~~~I~~v~fs~d~~~l~s~s~Dg~I 117 (1208)
.++.+++|.++|..++|||- |..|+|||.|+.|++|+... ..+...+ .+|...|++++|+|.|++|+++|.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46778899999999999998 88999999999999999884 3444444 4799999999999999999999999999
Q ss_pred EEEECCC--CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 118 RIWNWQS--RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 118 ~iwd~~s--~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
.||.-.. -+++.++.||...|.|++|+++|++|++++.|..|-+|.+.... +..
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd------------------------Efe 141 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD------------------------EFE 141 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC------------------------cEE
Confidence 9997653 37899999999999999999999999999999999999987432 233
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000961 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~-~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~v 274 (1208)
+..++.+|...|..+.|||...+|++++.|.+|++|+-. ...-..+.++.+|.+.|.+++|+|.|..|++++.|++++|
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 556899999999999999999999999999999999987 4444457899999999999999999999999999999999
Q ss_pred EeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE-CCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 275 WDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 275 wd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~-~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
|-..+.- -..+...++.++|. ++ .+++++ ++.+++|. ...+-..+.
T Consensus 222 w~~~~~~----~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~---------------------------~s~~~d~p~ 268 (312)
T KOG0645|consen 222 WRLYTDL----SGMHSRALYDVPWD-NG-VIASGGGDDAIRLFK---------------------------ESDSPDEPS 268 (312)
T ss_pred eeeccCc----chhcccceEeeeec-cc-ceEeccCCCEEEEEE---------------------------ecCCCCCch
Confidence 9754221 12355678889998 44 455554 44444443 332111111
Q ss_pred E---eecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 354 I---PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 354 ~---~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
. .-.... |...|.++.|+|.+...+++++ +||.+++|.+.
T Consensus 269 ~~l~~~~~~a---He~dVNsV~w~p~~~~~L~s~~-DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 WNLLAKKEGA---HEVDVNSVQWNPKVSNRLASGG-DDGIVNFWELE 311 (312)
T ss_pred HHHHHhhhcc---cccccceEEEcCCCCCceeecC-CCceEEEEEec
Confidence 1 111122 2448999999997555555544 78999999874
No 40
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.7e-31 Score=315.08 Aligned_cols=279 Identities=31% Similarity=0.512 Sum_probs=251.7
Q ss_pred EeecC-CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 4 KFETK-SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 4 ~l~~h-~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
.+.+| ...|+++.||++|.++++++.++.+++|+..+++ ..+.+.+|...|++++|+|++.++++++.|++|+|||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34444 7899999999999999999999999999998777 77888899999999999999999999999999999999
Q ss_pred -CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 81 -KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 81 -~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
..+.++.++.+|...|++++|+|+++.+++|+.|++|+|||+.+++++..+.+|.+.|++++|++++++|++++.||.|
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccE
Confidence 5669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR--GVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
++||+.++... +...+.++.. .++++.|+|++.++++++.|+.+++||+....
T Consensus 313 ~vwd~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 313 RVWDLETGSKL-------------------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred EEEECCCCcee-------------------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 99999886632 1113334443 59999999999999999999999999999988
Q ss_pred eeEEEeecCcCCC---eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC-CCCEEEEEEeCCCCEEEEEE
Q 000961 238 AWEVDTLRGHMNN---VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-HDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 238 ~~~~~~l~~h~~~---V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-~~~i~~la~sp~~~~la~g~ 309 (1208)
. .....+|... +.+...++.+.++++|+.|+.|.+||..++..++.+.+| ...+..+.++|..+++++++
T Consensus 368 ~--~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 368 S--VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred c--eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 7 7778888775 334455789999999999999999999999999999999 88899999999999999886
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-31 Score=260.22 Aligned_cols=283 Identities=22% Similarity=0.357 Sum_probs=254.8
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
++.+..|.++|..+.|+-||+|.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|..|.+||+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR--TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~--~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
+|+.++.+.+|.+.|..+.|+.+...+++|+.|.++++||.++. ++++++......|.++..+ +..|++|+.||++
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtv 167 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTV 167 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcE
Confidence 99999999999999999999999999999999999999999854 6788888888899998886 5789999999999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
|.||++.++... .....+|++++|+++++..+.++.|+++++.|-.+++.
T Consensus 168 RtydiR~G~l~s-----------------------------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl- 217 (307)
T KOG0316|consen 168 RTYDIRKGTLSS-----------------------------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL- 217 (307)
T ss_pred EEEEeecceeeh-----------------------------hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH-
Confidence 999998765322 22356899999999999999999999999999999998
Q ss_pred EEEeecCcCCCeE--EEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCC-EEEEEEeCCCCEEEEEECCCeeeE
Q 000961 240 EVDTLRGHMNNVS--CVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR-FWILASHPEMNLLAAGHDSGMIVF 316 (1208)
Q Consensus 240 ~~~~l~~h~~~V~--~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~-i~~la~sp~~~~la~g~~~gi~v~ 316 (1208)
+....+|.+.-. ..+++.....+++|++||.|.+||+.....+..+..+... +.+++++|....+.++...+...|
T Consensus 218 -L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 218 -LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred -HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 778888877543 4467777889999999999999999999999999888777 899999999888887777776665
Q ss_pred e
Q 000961 317 K 317 (1208)
Q Consensus 317 ~ 317 (1208)
.
T Consensus 297 ~ 297 (307)
T KOG0316|consen 297 Y 297 (307)
T ss_pred e
Confidence 4
No 42
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-30 Score=259.39 Aligned_cols=273 Identities=18% Similarity=0.356 Sum_probs=238.6
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
.+++-..+.|+.+.+.||++.||+++ ...|++||+++++ .+.+|.+|...|+++.|..+|+++++||+||+++|||+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEec
Confidence 35566678899999999999999986 5679999998875 58899999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~-~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
+...+.+.+. |..+|.++..+|+...|++|..+|.|++||+....+...+. ....+|.++...|+|.+++.+...|+.
T Consensus 113 R~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 113 RSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred cCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 9977766665 77999999999999999999999999999999887766553 345689999999999999999999999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
.+|++-+..... .......+..|.+-+..+.+||++++|++++.|.+++||+..+. ..
T Consensus 192 yvW~l~~~~~~s---------------------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~k 249 (311)
T KOG0315|consen 192 YVWRLLNHQTAS---------------------ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FK 249 (311)
T ss_pred EEEEccCCCccc---------------------cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-ee
Confidence 999997633221 12234467889999999999999999999999999999999988 22
Q ss_pred EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEe
Q 000961 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASH 299 (1208)
Q Consensus 240 ~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~s 299 (1208)
....+.+|...+...+||.||++|++++.|+.+++||+..++.+..+.+|.....+++..
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 256788999999999999999999999999999999999999999999888876666543
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-31 Score=305.92 Aligned_cols=235 Identities=25% Similarity=0.501 Sum_probs=216.6
Q ss_pred EecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe-------------------------------EEEEEccCCC
Q 000961 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-------------------------------CLFTLLGHLD 94 (1208)
Q Consensus 46 ~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-------------------------------~~~~l~~h~~ 94 (1208)
++......++|..|++++.+||.|-.|..|++|.+...+ ...++.||.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 344445679999999999999999999999999986321 2335779999
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccC
Q 000961 95 YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (1208)
Q Consensus 95 ~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~ 174 (1208)
+|..+.|+|+.++|+++|.|+++|+|.+.+..++..++||..+|.++.|+|.|-+++|++.|++-++|........
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl---- 528 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL---- 528 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764322
Q ss_pred CCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEE
Q 000961 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254 (1208)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l 254 (1208)
..+.+|...|.|+.|||+..++++|+.|.+|++||..++.. +..+.||.++|+++
T Consensus 529 -----------------------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 529 -----------------------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTAL 583 (707)
T ss_pred -----------------------hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEE
Confidence 26778999999999999999999999999999999999998 88899999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 255 ~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
+|||+|.+|++|+.||.|.+||+.+++.+..+.+|.+.+.++.|+.+|..||+|+
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC
Confidence 9999999999999999999999999999999999999999999999999999987
No 44
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-29 Score=285.32 Aligned_cols=476 Identities=14% Similarity=0.235 Sum_probs=358.0
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eEE---EEe-cccccCEEEEEEEcCC--CEEEEEECCCeEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-TLI---DRF-DEHDGPVRGVHFHKSQ--PLFVSGGDDYKIK 76 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g-~~i---~~l-~~h~~~V~~l~fsp~~--~~Lasgs~Dg~I~ 76 (1208)
.+.+|...|.-+. |-|.+++++..++.+.||+..++ ... ..+ +...+-|+++ +||.. +.++.|+.+|.+.
T Consensus 109 ~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lq 185 (910)
T KOG1539|consen 109 TTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQ 185 (910)
T ss_pred EeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEE
Confidence 4556665666544 44788999999999999998774 111 122 2222227776 46643 4689999999999
Q ss_pred EEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCC-EEEEEEC
Q 000961 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASL 155 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~-~l~s~s~ 155 (1208)
+||+++++.+++++++.+.|+++.=+|--..++.|..+|+|.++|++.++.+.+++...+.|++++|..||+ .+++|+.
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~ 265 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS 265 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence 999999999999999999999999999988999999999999999999999999995569999999999995 6667777
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN- 234 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~- 234 (1208)
.|.+.+||++..+... .....|.++|....|.|..+.+++++.|..+++|=.+
T Consensus 266 ~G~m~~wDLe~kkl~~--------------------------v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLIN--------------------------VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred CceEEEEEcCCCeeee--------------------------eeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 7999999998755432 2445789999999999999999999999998888555
Q ss_pred -CCceeEEEeecCcCCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCee----EE-----------Ee---ecCCCCEE
Q 000961 235 -ETKAWEVDTLRGHMNNVSCVMFH-AKQDIIVSNSEDKSIRVWDVTKRTG----VQ-----------TF---RREHDRFW 294 (1208)
Q Consensus 235 -~~~~~~~~~l~~h~~~V~~l~~s-p~g~~l~sgs~dg~I~vwd~~~~~~----~~-----------~~---~~~~~~i~ 294 (1208)
++.+..+..-.||+.+..++.|. .+|.++.+++.|++++.+++..... -+ .+ ...-.+|.
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 34333355667999999999998 6889999999999999887643111 00 00 00112344
Q ss_pred EEEEeCC-----CCEEEEE-ECCCeeeEeeCCCc--------------------ceEEecCCEEEEE-eCCeEEEEEccC
Q 000961 295 ILASHPE-----MNLLAAG-HDSGMIVFKLERER--------------------PAFAVSGDSLFYA-KDRFLRYYEFST 347 (1208)
Q Consensus 295 ~la~sp~-----~~~la~g-~~~gi~v~~l~~~~--------------------~~~s~~~~~L~~~-~d~~i~v~d~~~ 347 (1208)
.+++... .+.+++- .+.....|++...+ .+.+..|+..+.+ +.|.|.+|++++
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 4444331 1222221 22334455444322 1567789999998 999999999999
Q ss_pred CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEE
Q 000961 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFA 427 (1208)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l 427 (1208)
|-....+. +...| ..+|+.++...-++.++. + +.+|.+.+|+..+..... .+ .-...+..+.++.....+
T Consensus 480 Gi~r~sf~-~~~ah---~~~V~gla~D~~n~~~vs-a-~~~Gilkfw~f~~k~l~~---~l-~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 480 GIHRKSFG-DSPAH---KGEVTGLAVDGTNRLLVS-A-GADGILKFWDFKKKVLKK---SL-RLGSSITGIVYHRVSDLL 549 (910)
T ss_pred Ceeecccc-cCccc---cCceeEEEecCCCceEEE-c-cCcceEEEEecCCcceee---ee-ccCCCcceeeeeehhhhh
Confidence 86544332 12222 449999998877764433 3 357899999998764211 11 223356778888778888
Q ss_pred EEEcCCCEEEEEecC-CceeeeecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEeC-CCeeEEEECCCC
Q 000961 428 VLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT-PFVKYVVWSNDM 502 (1208)
Q Consensus 428 ~~~~~dg~I~Iwdl~-~~~~~~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~~-~~v~~v~ws~dg 502 (1208)
+.+..|-.|+++|.. .+.++.+.+|. .|+++.|||||++|++. |++|++||+.++.++..+.. .+++++.|||+|
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPng 629 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNG 629 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCC
Confidence 888889999999998 56778888887 99999999999999885 89999999999999999888 778999999999
Q ss_pred CEEEEEeCC--eEEEEec
Q 000961 503 ESVALLSKH--AIIIASK 518 (1208)
Q Consensus 503 ~~la~~s~~--~i~i~~~ 518 (1208)
.+||+...+ +||+|..
T Consensus 630 D~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 630 DFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CEEEEEEecCceEEEEEc
Confidence 999998765 4787753
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=289.37 Aligned_cols=285 Identities=24% Similarity=0.439 Sum_probs=243.4
Q ss_pred cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 000961 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1208)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1208)
-+.+|..|.|.|+|+.|++|+..|.+.+|+..+......++.|.++|+++.|++++.+++||+.+|.|++|+..- ..+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhH
Confidence 456899999999999999999999999999865444455678999999999999999999999999999999754 3444
Q ss_pred EEec-CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 130 VLTG-HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 130 ~l~~-h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
.+.. |...|.+++|+|++..+++++.||+|+|||....+... ++.+|.-.|.
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~---------------------------vL~GHgwdVk 226 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER---------------------------VLRGHGWDVK 226 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh---------------------------eeccCCCCcc
Confidence 4544 44899999999999999999999999999987655432 5689999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec
Q 000961 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 209 ~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 288 (1208)
++.|||...+|++|+.|..|++||.+++.+ +.++.+|.+.|..+.|+|++++|+++|.|..++++|+++.+.+.++++
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~ 304 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSC--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG 304 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcch--hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence 999999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEeCC-CCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcC
Q 000961 289 EHDRFWILASHPE-MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQS 367 (1208)
Q Consensus 289 ~~~~i~~la~sp~-~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (1208)
|...+++++|+|- ..+|++|+ .|+.|..|.+...+.+.... .+ |...
T Consensus 305 Hkkdv~~~~WhP~~~~lftsgg--------------------------~Dgsvvh~~v~~~~p~~~i~---~A---Hd~~ 352 (464)
T KOG0284|consen 305 HKKDVTSLTWHPLNESLFTSGG--------------------------SDGSVVHWVVGLEEPLGEIP---PA---HDGE 352 (464)
T ss_pred chhhheeeccccccccceeecc--------------------------CCCceEEEeccccccccCCC---cc---cccc
Confidence 9999999999994 44666665 46667777776444333222 22 2559
Q ss_pred CeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 368 i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
|.+++|+|-|..+ ++++.|.++++|.-..
T Consensus 353 iwsl~~hPlGhil--~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 353 IWSLAYHPLGHIL--ATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeeeeccccceeE--eecCCCcceeeeccCC
Confidence 9999999999844 5677899999998654
No 46
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=3.3e-28 Score=273.44 Aligned_cols=487 Identities=13% Similarity=0.148 Sum_probs=355.4
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE-EEecc-cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-DRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i-~~l~~-h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1208)
.-..+.|+++||+.+.+.||++-.+|.|-||+++.+-.. ..+.+ .++.|.+++|++ +..|.+.+.+|.|.-||+.++
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC
Confidence 345789999999999999999999999999999887443 33444 456799999995 456888888999999999999
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EEecCCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS--VLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 84 ~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~--~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
+....+....+.|++++.+|.+..++.|++||.+..++...+.... .+....+.|.++.|+|++..|++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 9999999999999999999999999999999988888887776554 33445689999999999999999999999999
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~ 241 (1208)
||...+........ + +-..-.+...-|+++.|-.++ .|++|...|+|.+||...+.. +
T Consensus 181 wd~~~~~t~~~~~~---------~----------~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL--i 238 (691)
T KOG2048|consen 181 WDVKSGQTLHIITM---------Q----------LDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTL--I 238 (691)
T ss_pred EEcCCCceEEEeee---------c----------ccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcch--h
Confidence 99987654331100 0 000011122346777777654 799999999999999999987 8
Q ss_pred EeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee----EEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEe
Q 000961 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG----VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~----~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
+....|...|.+++..++++++++++.|+.|..|...+... ......|...+.+++..++ .+.+|+.+....+.
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 88889999999999999999999999999999988766533 2223456677899998877 56666655555443
Q ss_pred eCCCc-------c-------eEEe-cCCEEEEE-eCCeEEEEEccCC------cceeeEeecCCCCCCCCcCCeEEEEcC
Q 000961 318 LERER-------P-------AFAV-SGDSLFYA-KDRFLRYYEFSTQ------KDTQVIPIRRPGSTSLNQSPRTLSYSP 375 (1208)
Q Consensus 318 l~~~~-------~-------~~s~-~~~~L~~~-~d~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~sp 375 (1208)
..++. + ..+. ..++|+.. ....+.+|.+.+. ....++.+....+ . .|.+.+.||
T Consensus 317 ~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~-~---nIs~~aiSP 392 (691)
T KOG2048|consen 317 SSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK-E---NISCAAISP 392 (691)
T ss_pred cccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc-c---ceeeeccCC
Confidence 33221 1 1222 22455555 6888888888775 2223333333332 2 789999999
Q ss_pred CCCEEEEEEecCCCEEEEEEccCCCCCCCcc--cccccCCceEEEEEEeCCcEEEEEc-CCCEEEEEecCC---ceeeee
Q 000961 376 TENAVLICSDVDGGSYELYVIPKDSIGRGDS--VQDAKKGLGGSAIFIARNRFAVLDK-SSNQVLVKNLKN---EVVKKS 449 (1208)
Q Consensus 376 dg~~llv~~~~~~g~v~l~~l~~~~~~~~~~--~~~~~~~~i~~~~fs~d~~~l~~~~-~dg~I~Iwdl~~---~~~~~l 449 (1208)
+|+.+++.+- ..+++|.+.......... ......-....+.|+-|+..++..+ ....+.+.++.+ +.+..+
T Consensus 393 dg~~Ia~st~---~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~ 469 (691)
T KOG2048|consen 393 DGNLIAISTV---SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSI 469 (691)
T ss_pred CCCEEEEeec---cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcc
Confidence 9999988776 678899988754221110 1112222466788888886666665 567788888873 333333
Q ss_pred cCCc---ceEEEEEeCCccEEEE--eCCeEEEEEcCCCeEEEEEeC--CCeeEEEECC-CC-CEEEEEeCCeEEEEecCc
Q 000961 450 ILPI---AADAIFYAGTGNLLCR--AEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSN-DM-ESVALLSKHAIIIASKKL 520 (1208)
Q Consensus 450 ~~~~---~v~~i~~s~dg~~Las--~dg~v~lwdl~~~~~l~~~~~--~~v~~v~ws~-dg-~~la~~s~~~i~i~~~~~ 520 (1208)
.... .|..|+.|++|.+++. +.+.|.+|++++++.-..... ..++.+.++| +. +.++..+++.++-++...
T Consensus 470 ~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 470 QSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 3332 8999999999999966 579999999998865444322 5689999995 33 444555566688888755
Q ss_pred ccee
Q 000961 521 VHQC 524 (1208)
Q Consensus 521 ~~~~ 524 (1208)
.++.
T Consensus 550 ~~l~ 553 (691)
T KOG2048|consen 550 RNLT 553 (691)
T ss_pred hhhh
Confidence 5543
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=6.2e-30 Score=267.86 Aligned_cols=333 Identities=16% Similarity=0.244 Sum_probs=281.7
Q ss_pred CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iw 120 (1208)
...+.+|..|..+|.+++.+|+.++++|||.|..-.+|++.++.....+.+|.+.|+++.|+.+|.+|+||+.+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 121 d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
...++.....+...-..+.-+.|||.+..|+.|+.||.+.+|.+.+.. ....+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---------------------------~~kv~ 186 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---------------------------LCKVM 186 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc---------------------------eeeEe
Confidence 999999988887667788999999999999999999999999997632 23378
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecC-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~-h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
.||..++++-.|.|+|+.++++..||+|++|+..++++ +..+.+ .....+++.++..+..++.|+.++.+++-+..+
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP--LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCce--eEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 89999999999999999999999999999999999987 444432 244677889999999999999999999999888
Q ss_pred CeeEEEeec--------CCCC---EEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCC
Q 000961 280 RTGVQTFRR--------EHDR---FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ 348 (1208)
Q Consensus 280 ~~~~~~~~~--------~~~~---i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~ 348 (1208)
++.+..... +... +-.+.++..-.+.|+|+ -||+|.+||+...
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~--------------------------vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS--------------------------VDGTIAIYDLAAS 318 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc--------------------------ccceEEEEecccc
Confidence 888776652 2222 33344444555666666 5889999999987
Q ss_pred cceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEE
Q 000961 349 KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAV 428 (1208)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~ 428 (1208)
+....... ...|..+.|-+ ..+++.++ .+|.++.|+... |+++....+|...|.+++++|+.++++
T Consensus 319 ~~R~~c~h--------e~~V~~l~w~~-t~~l~t~c--~~g~v~~wDaRt---G~l~~~y~GH~~~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 319 TLRHICEH--------EDGVTKLKWLN-TDYLLTAC--ANGKVRQWDART---GQLKFTYTGHQMGILDFALSPQKRLVV 384 (399)
T ss_pred hhheeccC--------CCceEEEEEcC-cchheeec--cCceEEeeeccc---cceEEEEecCchheeEEEEcCCCcEEE
Confidence 66554433 33899999999 45554433 469999999875 566667899999999999999999999
Q ss_pred EEcCCCEEEEEecC
Q 000961 429 LDKSSNQVLVKNLK 442 (1208)
Q Consensus 429 ~~~~dg~I~Iwdl~ 442 (1208)
+++.|++.+|++..
T Consensus 385 T~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 385 TVSDDNTALVFEVP 398 (399)
T ss_pred EecCCCeEEEEecC
Confidence 99999999999764
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.2e-31 Score=290.24 Aligned_cols=282 Identities=18% Similarity=0.290 Sum_probs=247.0
Q ss_pred CceEeecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCC-CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEE
Q 000961 1 MLTKFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~-g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1208)
|+..+.||...|+++.|.| .+.+|++++.|+.|+||++.+ ++++++|.+|..+|+.++|+++|..|.|++.|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 4678999999999999999 899999999999999999876 89999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCC
Q 000961 79 NYKMHRCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
|.++|+++..+. ....+.++.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|.++++.+.|+
T Consensus 286 DtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 286 DTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999986 34578999999999 7889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
+++||+.+..-.. ++....+.....++..+|++++++.-+.|..|.++.+...-
T Consensus 365 s~riWe~~~~v~i--------------------------k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 365 SVRIWENRIPVPI--------------------------KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred cEEEEEcCCCccc--------------------------hhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 9999998764322 22344445567789999999999999999999999865432
Q ss_pred e-eEEEeecCcC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCC-EEEEEE
Q 000961 238 A-WEVDTLRGHM--NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN-LLAAGH 309 (1208)
Q Consensus 238 ~-~~~~~l~~h~--~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~-~la~g~ 309 (1208)
. -....+.+|. +.-..+.|||||.+|++|+.||.+.+||..+-+.+..++.|.+.+..+.|+|... .+|+++
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc
Confidence 1 1133456665 3456789999999999999999999999999999999999999999999999654 455554
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=271.87 Aligned_cols=291 Identities=23% Similarity=0.413 Sum_probs=261.0
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
.+.+.+.+|..+|+.+-|+|+-..++++++|++|++||+.++++...++||.+.+.++.|+..|+++++++.|-.+.+||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 122 WQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 122 ~~s-~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
.++ .+++..+.+|.+.|.++.|-|.|++|++++.|.+|+.|++.++. ...++
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~---------------------------cv~t~ 231 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY---------------------------CVKTF 231 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce---------------------------eEEec
Confidence 986 67888889999999999999999999999999999999998855 34578
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC---------------CCEEEE
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK---------------QDIIVS 265 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~---------------g~~l~s 265 (1208)
.+|...|..+..+.||.++++++.|.+|++|-..+.++ ...++.|..+|-+++|.|. ++++.+
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~--k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC--KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh--hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 89999999999999999999999999999999999876 6778999999999999762 358999
Q ss_pred EeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEc
Q 000961 266 NSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEF 345 (1208)
Q Consensus 266 gs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~ 345 (1208)
++.|++|++||+.++.++.++.+|...|..++|+|.|++|++..| |+++++||+
T Consensus 310 ~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD--------------------------Dktlrvwdl 363 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD--------------------------DKTLRVWDL 363 (406)
T ss_pred ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec--------------------------CCcEEEEEe
Confidence 999999999999999999999999999999999999999999885 789999999
Q ss_pred cCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEc
Q 000961 346 STQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (1208)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l 396 (1208)
++++....+. .+.+ .++++.|..+..++ .+|+-+..+++|..
T Consensus 364 ~~~~cmk~~~--ah~h-----fvt~lDfh~~~p~V--vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 364 KNLQCMKTLE--AHEH-----FVTSLDFHKTAPYV--VTGSVDQTVKVWEC 405 (406)
T ss_pred ccceeeeccC--CCcc-----eeEEEecCCCCceE--Eeccccceeeeeec
Confidence 9988755444 3233 88999999887744 55667778888863
No 50
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=2.4e-28 Score=264.50 Aligned_cols=468 Identities=17% Similarity=0.246 Sum_probs=308.5
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCC--------eEEEEECCCCeEEEEecccccCEEEEEEEcC--CCEEEEE--E
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSG--------VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS--QPLFVSG--G 70 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg--------~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~--~~~Lasg--s 70 (1208)
+.+-+|...|.|++.|||.-.+++|-..| .+++||..+-..++.+...+..|+|++|++. |.+|+.. +
T Consensus 98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s 177 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS 177 (626)
T ss_pred ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC
Confidence 35679999999999999998888775444 5999998888888888888889999999983 4455554 4
Q ss_pred CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE---Eec-CCCCEEEEEEeeC
Q 000961 71 DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV---LTG-HNHYVMCASFHPK 146 (1208)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~---l~~-h~~~V~~l~~~p~ 146 (1208)
.+..+.|||+..+............|....|+|..+-++.....+.+.+|+++.+..... +.. ....|.|++|.++
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en 257 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN 257 (626)
T ss_pred CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC
Confidence 556899999998888888877888999999999988777777789999999998866543 332 2367999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 000961 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (1208)
Q Consensus 147 ~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg 226 (1208)
|+ +++|..+|.|.||+..+.+.. +... .|+++|.+++.-.+|. |++|+.|+
T Consensus 258 gd-viTgDS~G~i~Iw~~~~~~~~--------------------------k~~~-aH~ggv~~L~~lr~Gt-llSGgKDR 308 (626)
T KOG2106|consen 258 GD-VITGDSGGNILIWSKGTNRIS--------------------------KQVH-AHDGGVFSLCMLRDGT-LLSGGKDR 308 (626)
T ss_pred CC-EEeecCCceEEEEeCCCceEE--------------------------eEee-ecCCceEEEEEecCcc-EeecCccc
Confidence 86 889999999999998764432 2234 8999999999999996 55599999
Q ss_pred cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEE
Q 000961 227 QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLA 306 (1208)
Q Consensus 227 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la 306 (1208)
.|..||-.-.+. .-..++...++|+.++=...+ |+.|...+.|..=.+.++..+ ...+|.+..|.++.+|+.+.++
T Consensus 309 ki~~Wd~~y~k~-r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~ 384 (626)
T KOG2106|consen 309 KIILWDDNYRKL-RETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLL 384 (626)
T ss_pred eEEecccccccc-ccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhhee
Confidence 999999432221 112223333344433322111 333333333333333333222 1223333444444444433333
Q ss_pred E-EECCCeeeEeeCCCcc-------------eEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEE
Q 000961 307 A-GHDSGMIVFKLERERP-------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (1208)
Q Consensus 307 ~-g~~~gi~v~~l~~~~~-------------~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (1208)
+ |.+..+.+|+ ..++ .|-+.| .++.+ ..|...+.|..+...+ +++... . +++.+
T Consensus 385 T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv---~~~~d~--~---~ls~v 453 (626)
T KOG2106|consen 385 TCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV---TIHTDN--E---QLSVV 453 (626)
T ss_pred eccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeE---EEEecC--C---ceEEE
Confidence 2 2233333333 1111 111222 33333 4566667777774433 333322 2 89999
Q ss_pred EEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCc-eeeeec
Q 000961 372 SYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE-VVKKSI 450 (1208)
Q Consensus 372 ~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~-~~~~l~ 450 (1208)
+|+|+|.++++. +.|+.+.||.++........ .-.-+...++.+.||+|++|+.+.+.|-.|..|..... .....+
T Consensus 454 ~ysp~G~~lAvg--s~d~~iyiy~Vs~~g~~y~r-~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 454 RYSPDGAFLAVG--SHDNHIYIYRVSANGRKYSR-VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred EEcCCCCEEEEe--cCCCeEEEEEECCCCcEEEE-eeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence 999999998774 45789999999876542221 11122368999999999999999999999999943311 111111
Q ss_pred C------------------Cc-ceEEEEEeCCccEEEEeC--CeEEEEEcCCCeEEEEEe---C--CCeeEEEECCCCCE
Q 000961 451 L------------------PI-AADAIFYAGTGNLLCRAE--DRVVIFDLQQRLVLGDLQ---T--PFVKYVVWSNDMES 504 (1208)
Q Consensus 451 ~------------------~~-~v~~i~~s~dg~~Las~d--g~v~lwdl~~~~~l~~~~---~--~~v~~v~ws~dg~~ 504 (1208)
. +. .+..++-+....+++++| |.|++|...--+..+.+. . +-|++|+|..+.+.
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~ 610 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSH 610 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCce
Confidence 0 11 344455566667777764 899999876544433332 2 56899999888777
Q ss_pred EEEEeCCe-EEEEe
Q 000961 505 VALLSKHA-IIIAS 517 (1208)
Q Consensus 505 la~~s~~~-i~i~~ 517 (1208)
+.+..+|. ++.|+
T Consensus 611 li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 611 LISTGKDTSIMQWR 624 (626)
T ss_pred EEecCCCceEEEEE
Confidence 76666554 55554
No 51
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=6.7e-29 Score=284.03 Aligned_cols=430 Identities=13% Similarity=0.216 Sum_probs=335.3
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEE
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWN 79 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd 79 (1208)
++.+|+++.++|+++.=+|--..+|.|..+|+|.|++++.++.+.+|+...++|++++|..||+ .+++|+..|.+.+||
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 4788999999999999999999999999999999999999999999975569999999999987 677777889999999
Q ss_pred CCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEEecCCCCEEEEEEe-eCCCEEEEE
Q 000961 80 YKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR----TCISVLTGHNHYVMCASFH-PKEDLVVSA 153 (1208)
Q Consensus 80 ~~~~~~~~~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~----~~i~~l~~h~~~V~~l~~~-p~~~~l~s~ 153 (1208)
++..+.+..+. .|.+.|....|.|..+.+++++.|+.+++|=.+++ +.++.-.||..+..|+.|. .+|..+.++
T Consensus 274 Le~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 274 LEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred cCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence 99888877665 89999999999999999999999999999965543 4455667999999999998 678999999
Q ss_pred ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-----CCEEEEEeCCCcE
Q 000961 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-----LPLIVSGADDRQV 228 (1208)
Q Consensus 154 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----g~~L~sgs~dg~I 228 (1208)
+.|++++.+++............ .. ..............-.-.+|..+++... .+.+++.-.+...
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~~---~~------~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~ 424 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQL---HN------KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA 424 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhccc---cc------ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence 99999999987653322111100 00 0000000000011122345666665542 2345555567889
Q ss_pred EEEECCCCceeE----EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe---ecCCCCEEEEEEeCC
Q 000961 229 KLWRMNETKAWE----VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF---RREHDRFWILASHPE 301 (1208)
Q Consensus 229 ~iwd~~~~~~~~----~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~---~~~~~~i~~la~sp~ 301 (1208)
+.|++.+...-. ...+......+++++.++-|++.+.|+..|.|-+|++.+|-....| ..|...|+.++...-
T Consensus 425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT 504 (910)
T ss_pred EEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence 999998765311 1112224578999999999999999999999999999999988888 478889999999988
Q ss_pred CCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEE
Q 000961 302 MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVL 381 (1208)
Q Consensus 302 ~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ll 381 (1208)
++.+++++. +|-+.+||+.+......+.+. + .+..+.++.....++
T Consensus 505 n~~~vsa~~--------------------------~Gilkfw~f~~k~l~~~l~l~---~-----~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 505 NRLLVSAGA--------------------------DGILKFWDFKKKVLKKSLRLG---S-----SITGIVYHRVSDLLA 550 (910)
T ss_pred CceEEEccC--------------------------cceEEEEecCCcceeeeeccC---C-----Ccceeeeeehhhhhh
Confidence 888887774 667889999886643333322 2 778888887776555
Q ss_pred EEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-CceeeeecCCcceEEEEE
Q 000961 382 ICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPIAADAIFY 460 (1208)
Q Consensus 382 v~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~l~~~~~v~~i~~ 460 (1208)
+. .++-.|.+++..+.. +...+.+|.+.+++++||||||++++++.|++|++||+. +..+-.+..+.++.++.|
T Consensus 551 ~~--~ddf~I~vvD~~t~k---vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~ 625 (910)
T KOG1539|consen 551 IA--LDDFSIRVVDVVTRK---VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSF 625 (910)
T ss_pred hh--cCceeEEEEEchhhh---hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEE
Confidence 43 356789999987543 333678999999999999999999999999999999999 677888888889999999
Q ss_pred eCCccEEEEe--C-CeEEEEE
Q 000961 461 AGTGNLLCRA--E-DRVVIFD 478 (1208)
Q Consensus 461 s~dg~~Las~--d-g~v~lwd 478 (1208)
||+|.+|++. | ..|++|.
T Consensus 626 SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 626 SPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCCCEEEEEEecCceEEEEE
Confidence 9999999985 4 7789995
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.3e-31 Score=270.27 Aligned_cols=279 Identities=25% Similarity=0.385 Sum_probs=245.8
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEe--------cccccCEEEEEEEcCCCEEEEEECCCeEEEE
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF--------DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l--------~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1208)
+..+.+.|..|||||++|++|+.||.|.+||+.+|++.+.+ --++.+|.|+.||.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 44567899999999999999999999999999999876544 3588999999999999999999999999999
Q ss_pred ECCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCC
Q 000961 79 NYKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 79 d~~~~~~~~~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
.+.+|.|+..+. .|+..|+++.||.|+..+++++.|.+++|.-+.+|+++..++||++.|+.+.|.++|..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999999996 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNET 236 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~L~sgs~dg~I~iwd~~~~ 236 (1208)
+|++|+..+.+.... +...+.+.+|+++-.-|. .+.++++...++|.+.++...
T Consensus 371 tvkvW~~KtteC~~T-------------------------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 371 TVKVWHGKTTECLST-------------------------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred cEEEecCcchhhhhh-------------------------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 999999988655432 122345677888887774 457888989999999998865
Q ss_pred ceeEEEeec---CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCe
Q 000961 237 KAWEVDTLR---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGM 313 (1208)
Q Consensus 237 ~~~~~~~l~---~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi 313 (1208)
- +..+. ...+...+.+.+|.|.++.+.++|+.++.|...+|+...++..|...+..++-+|..+++|+-+.+|+
T Consensus 426 v---VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 426 V---VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred E---EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccch
Confidence 4 34432 23456778899999999999999999999999999999999999999999999999999998776553
No 53
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.3e-27 Score=268.40 Aligned_cols=485 Identities=19% Similarity=0.300 Sum_probs=337.0
Q ss_pred ceEeecCCCCEEEEEEeCCCC---EEEEEecCCeEEEEECCCCe--EEEEecccccCEEEEEEEcCCCEEEEEECCCeEE
Q 000961 2 LTKFETKSNRVKGLSFHSKRP---WILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~---~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~ 76 (1208)
++.+.||..+|+|+.|-|+.. ++++|+.||.|.+|.++... .+..+.+|...+.|+ +.......+...|+.+.
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGTVS 124 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCceEE
Confidence 568999999999999999887 89999999999999988443 345566666555444 33222222235677777
Q ss_pred EEECCCC--------------------------------------------------eEEEEEccCCCCEEEEEEcCCCC
Q 000961 77 VWNYKMH--------------------------------------------------RCLFTLLGHLDYIRTVQFHHEYP 106 (1208)
Q Consensus 77 vWd~~~~--------------------------------------------------~~~~~l~~h~~~I~~v~fs~d~~ 106 (1208)
+||.+.. +.+..+.||.+.|++++|...+.
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 7776322 22335679999999999987554
Q ss_pred ---EEEEEECCCcEEEEECCCCe---------------------EEE----------EEecCCCCEEEEEEeeCCCEEEE
Q 000961 107 ---WIVSASDDQTIRIWNWQSRT---------------------CIS----------VLTGHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 107 ---~l~s~s~Dg~I~iwd~~s~~---------------------~i~----------~l~~h~~~V~~l~~~p~~~~l~s 152 (1208)
+|+|+|.|..||||.+.-+. ... .+.||.+.|+++.|+|.+..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 88999999999999764211 111 12389999999999999999999
Q ss_pred EECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE-EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 000961 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY-VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iw 231 (1208)
+|.|.++.+|......-.- ...++. ...+...+.....|+|+++.+++-+..|-.++|
T Consensus 285 ASaDksmiiW~pd~~tGiW---------------------v~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIW---------------------VDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cccCcceEEEecCCccceE---------------------EEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 9999999999876532111 001111 222456678899999999999999999999999
Q ss_pred ECCCCcee-EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEEeecCCCCEEEEEEeCCCCEEE
Q 000961 232 RMNETKAW-EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREHDRFWILASHPEMNLLA 306 (1208)
Q Consensus 232 d~~~~~~~-~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~----~~~~~~~~~~~~i~~la~sp~~~~la 306 (1208)
...+...| ......||...|+.+.|+|.|.+|++.|.|.+-|+|-.-.. ..+..-+.|...++++++-+....++
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence 95444433 24456799999999999999999999999999999864311 22333345667788999888555555
Q ss_pred EEECCCe-eeEeeCCC---------------------------------------------------------------c
Q 000961 307 AGHDSGM-IVFKLERE---------------------------------------------------------------R 322 (1208)
Q Consensus 307 ~g~~~gi-~v~~l~~~---------------------------------------------------------------~ 322 (1208)
+|.+..+ ++|+.... .
T Consensus 424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP 503 (764)
T KOG1063|consen 424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP 503 (764)
T ss_pred ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence 6555443 34432210 0
Q ss_pred c---------------------------eEEecCCEEEEE------eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCe
Q 000961 323 P---------------------------AFAVSGDSLFYA------KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPR 369 (1208)
Q Consensus 323 ~---------------------------~~s~~~~~L~~~------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~ 369 (1208)
| +.+++++.++++ ....|++|+..+-.... .+. +| ...|+
T Consensus 504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~--~L~--~H---sLTVT 576 (764)
T KOG1063|consen 504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ--ELE--GH---SLTVT 576 (764)
T ss_pred ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh--eec--cc---ceEEE
Confidence 0 334456777776 34568899988755444 232 22 34899
Q ss_pred EEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCc-ccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCc---e
Q 000961 370 TLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGD-SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE---V 445 (1208)
Q Consensus 370 ~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~-~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~---~ 445 (1208)
.++|||||++++.++. |.++.+|+.......... .....|..-|.++.|+|+++++++++.|.+|.||..... .
T Consensus 577 ~l~FSpdg~~LLsvsR--DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSR--DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEECCCCcEEEEeec--CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence 9999999999887654 789999998765443321 135678889999999999999999999999999999843 2
Q ss_pred eee---ecCCcceEEEEEeCC-----ccEEEEe--CCeEEEEEcCCC-e--E--EEEEeC---------CCeeEEEECCC
Q 000961 446 VKK---SILPIAADAIFYAGT-----GNLLCRA--EDRVVIFDLQQR-L--V--LGDLQT---------PFVKYVVWSND 501 (1208)
Q Consensus 446 ~~~---l~~~~~v~~i~~s~d-----g~~Las~--dg~v~lwdl~~~-~--~--l~~~~~---------~~v~~v~ws~d 501 (1208)
+.. ++....|+.+++.|- +.+++.+ .|.|.+|....- + . ...+.. ..|+.+.|+|-
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 222 233338888888774 2244444 799999986511 1 0 111111 56889999864
Q ss_pred --------C--CEEEEEeCCe-EEEEec
Q 000961 502 --------M--ESVALLSKHA-IIIASK 518 (1208)
Q Consensus 502 --------g--~~la~~s~~~-i~i~~~ 518 (1208)
. ..+++++++. +.|++.
T Consensus 735 ~~~~~~~~~~~l~la~~g~D~~vri~nv 762 (764)
T KOG1063|consen 735 CSDDWVEDKEWLNLAVGGDDESVRIFNV 762 (764)
T ss_pred cccccccccceeEEeeecccceeEEeec
Confidence 2 2346655544 555543
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.9e-31 Score=274.25 Aligned_cols=269 Identities=28% Similarity=0.542 Sum_probs=228.5
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
.+..|.|+.+. ...+++|..|.+|+|||..+..++..+.+|.+.|.|+.|. .+.+++|+.|.+|+|||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 35679999986 4568999999999999999999999999999999999985 4599999999999999999999999
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEEC
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC---ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~---i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl 164 (1208)
++-+|...|..+.|+. .+++++|.|.+|.+||+.+... ...+.||...|..+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 9999999999999985 4899999999999999987643 34667999999999996 569999999999999999
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEee
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL 244 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l 244 (1208)
.+.+.. .++.+|..+|.|+.+. ++++++|+.|.+|++||+..+.+ +..+
T Consensus 348 st~efv---------------------------Rtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~c--LRvL 396 (499)
T KOG0281|consen 348 STCEFV---------------------------RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC--LRVL 396 (499)
T ss_pred cceeee---------------------------hhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHH--HHHH
Confidence 886643 3788999999998884 68999999999999999999998 8889
Q ss_pred cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee---------EEEeecCCCCEEEEEEeCCCCEEEEEECCCeee
Q 000961 245 RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG---------VQTFRREHDRFWILASHPEMNLLAAGHDSGMIV 315 (1208)
Q Consensus 245 ~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~---------~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v 315 (1208)
.||..-|.++.|. .+.|++|+.||+|+|||+..+.. +.+...|.++|..+.|.. -+.+++.+++.+.+
T Consensus 397 eGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILi 473 (499)
T KOG0281|consen 397 EGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILI 473 (499)
T ss_pred hchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEE
Confidence 9999999999996 56799999999999999986542 334456777888887753 34455555554444
Q ss_pred Eee
Q 000961 316 FKL 318 (1208)
Q Consensus 316 ~~l 318 (1208)
|++
T Consensus 474 WdF 476 (499)
T KOG0281|consen 474 WDF 476 (499)
T ss_pred EEc
Confidence 443
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4e-29 Score=255.54 Aligned_cols=285 Identities=26% Similarity=0.432 Sum_probs=237.8
Q ss_pred EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC-CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000961 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY-KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~-~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1208)
+..+.+|++.|..+.|+|+|.+|||||.|..|.+|+. ...+-...+++|++.|..+.|.+|++.|++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 3445789999999999999999999999999999995 445566788899999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 123 QSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 123 ~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
++|+++..+++|...|.++.-+..| .++.+++.||++++||+++...... .
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t----------------------------~ 171 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT----------------------------F 171 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc----------------------------c
Confidence 9999999999999999998854445 5777899999999999987543321 1
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-
Q 000961 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR- 280 (1208)
Q Consensus 202 ~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~- 280 (1208)
.....++++.|..++..+.+|+-|+.|++||++.... ...+.||..+|+.+..+|+|.++.+.+.|.++++||++..
T Consensus 172 ~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred ccceeEEEEEecccccceeeccccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence 2345688999999999999999999999999998887 8999999999999999999999999999999999998743
Q ss_pred ---eeEEEeecCCC----CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 281 ---TGVQTFRREHD----RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 281 ---~~~~~~~~~~~----~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
+++..+.++.. .....+|+|++..+.+|+ .|+.+++||..+...+..
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags--------------------------~dr~vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS--------------------------ADRFVYVWDTTSRRILYK 303 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCcccccc--------------------------ccceEEEeecccccEEEE
Confidence 34566665543 245678999999998887 577888999877554322
Q ss_pred EeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEE
Q 000961 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYEL 393 (1208)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l 393 (1208)
-+|| ++.|..+.|+|....++.++. |.++.+
T Consensus 304 ----lpGh---~gsvn~~~Fhp~e~iils~~s--dk~i~l 334 (338)
T KOG0265|consen 304 ----LPGH---YGSVNEVDFHPTEPIILSCSS--DKTIYL 334 (338)
T ss_pred ----cCCc---ceeEEEeeecCCCcEEEEecc--CceeEe
Confidence 2344 569999999999997665443 556654
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.4e-28 Score=313.17 Aligned_cols=277 Identities=16% Similarity=0.286 Sum_probs=232.9
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC----e----EEEEecccccCEEEEEEEcC-CCEEEEEECCCeE
Q 000961 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----T----LIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKI 75 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g----~----~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I 75 (1208)
+..|.+.|.+++|+|+|++||+|+.||.|+|||..+. . ....+ .+...|.+++|+|. +.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 12223 24568999999874 7899999999999
Q ss_pred EEEECCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee-CCCEEEEE
Q 000961 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSA 153 (1208)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~v~fs~-d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p-~~~~l~s~ 153 (1208)
++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++.++..+..+ ..|.++.|++ ++.+|++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999999999999999999997 7889999999999999999999998888755 6799999964 68999999
Q ss_pred ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000961 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (1208)
Q Consensus 154 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~ 233 (1208)
+.||.|++||++..+.. ...+.+|...|.++.|. ++.+|++++.|+.|++||+
T Consensus 637 s~dg~I~iwD~~~~~~~--------------------------~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 637 SADHKVYYYDLRNPKLP--------------------------LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred eCCCeEEEEECCCCCcc--------------------------ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 99999999999764311 12456899999999997 6789999999999999999
Q ss_pred CCCc----eeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee-------------cCCCCEEEE
Q 000961 234 NETK----AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-------------REHDRFWIL 296 (1208)
Q Consensus 234 ~~~~----~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~-------------~~~~~i~~l 296 (1208)
.... ...+..+.+|...+.++.|+|++.+|++|+.|+.|++|+......+..+. .+...|.++
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v 769 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV 769 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE
Confidence 7531 11367888999999999999999999999999999999987655443321 233458999
Q ss_pred EEeCCCCEEEEEEC
Q 000961 297 ASHPEMNLLAAGHD 310 (1208)
Q Consensus 297 a~sp~~~~la~g~~ 310 (1208)
+|+|++..+++|+.
T Consensus 770 ~ws~~~~~lva~~~ 783 (793)
T PLN00181 770 CWRGQSSTLVAANS 783 (793)
T ss_pred EEcCCCCeEEEecC
Confidence 99999999988874
No 57
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.8e-28 Score=269.93 Aligned_cols=491 Identities=15% Similarity=0.192 Sum_probs=348.8
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEE--CCCeEEEEECCCCeEEEEEcc
Q 000961 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG--DDYKIKVWNYKMHRCLFTLLG 91 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs--~Dg~I~vWd~~~~~~~~~l~~ 91 (1208)
+++-+|-..++|. -....|.+||.+..+.-+.+..|..+++|++|+++|+|+++|- ....++||++.....+..+..
T Consensus 42 gLa~~p~Sgl~aY-pAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvd 120 (1080)
T KOG1408|consen 42 GLASVPCSGLCAY-PAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVD 120 (1080)
T ss_pred cccccccccceee-ccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhh
Confidence 3444554443332 2456899999998888888888999999999999999999984 677899999999889999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcc
Q 000961 92 HLDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (1208)
Q Consensus 92 h~~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~ 169 (1208)
|...|+|++|+|.++++++.+. |-.|.+|||+.......-+ -...|..++|+.+|.|+++.+ ...|++|.+...++
T Consensus 121 HKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~K 198 (1080)
T KOG1408|consen 121 HKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSK 198 (1080)
T ss_pred ccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEEccCCceeeeee-eeeEEEEEeecccc
Confidence 9999999999999999998776 5678899997554333222 356789999999999999988 68999999987663
Q ss_pred cccc---CCCcceeeccccccc---c-c---cccceEEEEEecc-----------------CCCeEEEEEcCCCCEEEEE
Q 000961 170 KTVS---PADDILRLSQMNTDL---F-G---GVDAVVKYVLEGH-----------------DRGVNWAAFHPTLPLIVSG 222 (1208)
Q Consensus 170 ~~~~---~~~~~~~~~~~~~~~---~-~---~~~~~~~~~~~~h-----------------~~~V~~l~~sp~g~~L~sg 222 (1208)
.... ++...+.-....... . + ..+......-.|| ....+|++.+ .++|++|
T Consensus 199 ykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cg 276 (1080)
T KOG1408|consen 199 YKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACG 276 (1080)
T ss_pred ccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEe
Confidence 2211 111111000000000 0 0 0011111111122 2334556655 4689999
Q ss_pred eCCCcEEEEECCCCceeEEEeec------------------------CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 223 ADDRQVKLWRMNETKAWEVDTLR------------------------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 223 s~dg~I~iwd~~~~~~~~~~~l~------------------------~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
+.+|.|++|+..+-.. ..+++ +..-...++.|+|....+.+...|.+++|||++
T Consensus 277 Ca~g~vrlFnp~tL~y--~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvr 354 (1080)
T KOG1408|consen 277 CAKGMVRLFNPETLDY--AGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVR 354 (1080)
T ss_pred eccceeeecCcchhhh--ccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecc
Confidence 9999999998765432 11110 011123467899999999999999999999998
Q ss_pred CCeeE---EEeecCCCCEEEEEEeC------------CCCEEEEEECCCeeeEeeCCCcc--------------------
Q 000961 279 KRTGV---QTFRREHDRFWILASHP------------EMNLLAAGHDSGMIVFKLERERP-------------------- 323 (1208)
Q Consensus 279 ~~~~~---~~~~~~~~~i~~la~sp------------~~~~la~g~~~gi~v~~l~~~~~-------------------- 323 (1208)
.-..+ ..+-.|...||.+..-| .+.++.+.+|+.+++|++.....
T Consensus 355 D~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d 434 (1080)
T KOG1408|consen 355 DVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYED 434 (1080)
T ss_pred ccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCcccc
Confidence 65443 33456777888876544 45566677888999998875210
Q ss_pred -------------------------------eEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEE
Q 000961 324 -------------------------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (1208)
Q Consensus 324 -------------------------------~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (1208)
+++++|++|+.+ ..|.+++|++.+-+....+. . |...|.++
T Consensus 435 ~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e--A-----HesEilcL 507 (1080)
T KOG1408|consen 435 STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME--A-----HESEILCL 507 (1080)
T ss_pred CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee--c-----ccceeEEE
Confidence 677888999999 89999999998865533322 1 24499999
Q ss_pred EEcC-CCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCC--cEEEEEcCCCEEEEEecC--Ccee
Q 000961 372 SYSP-TENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARN--RFAVLDKSSNQVLVKNLK--NEVV 446 (1208)
Q Consensus 372 ~~sp-dg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~--~~l~~~~~dg~I~Iwdl~--~~~~ 446 (1208)
.||- +-..-++++++.|..|++|++..+-. +.+++.+|...|+++.|...| +.+++++.|..|.+.... +...
T Consensus 508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~--l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~ 585 (1080)
T KOG1408|consen 508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYD--LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR 585 (1080)
T ss_pred eecCchhhhHhhhhccCCceEEEEecccccc--hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce
Confidence 9983 32222345566888999999886532 344788999999999999887 778888888888776554 1111
Q ss_pred eeecC-----CcceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEeC-----CCeeEEEECCCCCEEEEEeCCe-E
Q 000961 447 KKSIL-----PIAADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT-----PFVKYVVWSNDMESVALLSKHA-I 513 (1208)
Q Consensus 447 ~~l~~-----~~~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~~-----~~v~~v~ws~dg~~la~~s~~~-i 513 (1208)
...++ +..+.+|...|+.+++++. |..|++||+++|+....++. +....|...|.|.|||+...+. +
T Consensus 586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce
Confidence 11111 2278999999998888764 99999999999999999987 5567789999999999877655 6
Q ss_pred EEEecCc
Q 000961 514 IIASKKL 520 (1208)
Q Consensus 514 ~i~~~~~ 520 (1208)
.+++...
T Consensus 666 ~~~Df~s 672 (1080)
T KOG1408|consen 666 CFVDFVS 672 (1080)
T ss_pred EEEEecc
Confidence 6766543
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=268.69 Aligned_cols=277 Identities=16% Similarity=0.270 Sum_probs=237.3
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC---eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g---~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1208)
+.|+.|++.|.-+.||++|++||+++.|.+..+|++... ++.+++.+|..+|..+.||||.++|++++.|..+.+||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 467899999999999999999999999999999987544 45788899999999999999999999999999999999
Q ss_pred CCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecC-CCCEEEEEEeeCCCEEEEEECCC
Q 000961 80 YKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 80 ~~~~~~~~~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h-~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
..+|.+...+. +|...+.+++|.|||..+++|+.|++|..||+.. +......+- ...|.+++.++||+++++.+.|.
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence 99999887774 3568899999999999999999999999999864 444555443 35699999999999999999999
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
.|++++..+..... +.....+|++++.|.+++++++.-.+..+++||+...+
T Consensus 377 ~i~l~~~e~~~dr~----------------------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 377 KIRLYNREARVDRG----------------------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred ceeeechhhhhhhc----------------------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 99999987633221 22345789999999999999999999999999999877
Q ss_pred eeEEEeecCcCCC--eEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCC-CEEEEEEC
Q 000961 238 AWEVDTLRGHMNN--VSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEM-NLLAAGHD 310 (1208)
Q Consensus 238 ~~~~~~l~~h~~~--V~~l~~sp-~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~-~~la~g~~ 310 (1208)
. +....||... +..-+|.- +..++++||+|+.|+||+..+++++..+.+|...+.+++|+|.. .++|+++|
T Consensus 429 l--v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 429 L--VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred H--HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 6 7777787654 33345544 55899999999999999999999999999999999999999955 46777775
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.5e-28 Score=272.67 Aligned_cols=288 Identities=31% Similarity=0.542 Sum_probs=248.9
Q ss_pred EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000961 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1208)
+.++.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+++++.+++++.||.|++||+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 34577899999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc
Q 000961 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (1208)
Q Consensus 124 s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 203 (1208)
+++.+..+..|...+.++.|+|+++++++++.+|.|.+||+.+.+. ...+..|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~ 134 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC---------------------------LTTLRGH 134 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE---------------------------EEEeccC
Confidence 9888889999999999999999988888888899999999975332 2245578
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 000961 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (1208)
Q Consensus 204 ~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~ 283 (1208)
...+.+++|+|++.++++++.+|.|++||+.+.+. ...+..|...+.++.|+|+++.+++++.++.|++||+.+++.+
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 88999999999998888888899999999997776 6667788889999999999999999999999999999999888
Q ss_pred EEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCC
Q 000961 284 QTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (1208)
Q Consensus 284 ~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 363 (1208)
..+..+...+.++.|+|++.++++++ .++.+++|++.+++....+. ++
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~--------------------------~~~~i~i~~~~~~~~~~~~~----~~-- 260 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGS--------------------------EDGTIRVWDLRTGECVQTLS----GH-- 260 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEc--------------------------CCCcEEEEEcCCceeEEEcc----cc--
Confidence 88877888999999999988888776 25667788887765544333 22
Q ss_pred CCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 364 ~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
...+.+++|+|+++.++++ +.++.+++|+
T Consensus 261 -~~~i~~~~~~~~~~~l~~~--~~d~~i~iw~ 289 (289)
T cd00200 261 -TNSVTSLAWSPDGKRLASG--SADGTIRIWD 289 (289)
T ss_pred -CCcEEEEEECCCCCEEEEe--cCCCeEEecC
Confidence 2289999999998876553 3678999984
No 60
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=292.15 Aligned_cols=294 Identities=26% Similarity=0.426 Sum_probs=252.0
Q ss_pred EEecc-cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe--EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 45 DRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 45 ~~l~~-h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~--~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
..+.. |...|.++.|+++|..+++++.|+.+++|+..+.+ ....+.+|...|..++|+|++.++++++.|++|+|||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34434 47889999999999999999999999999998777 7778889999999999999999999999999999999
Q ss_pred C-CCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 122 W-QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 122 ~-~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
+ ..+.++.++.+|...|++++|+|+++++++|+.|++|++||+++.+ +...+
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~---------------------------~~~~l 284 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE---------------------------CVRKL 284 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe---------------------------EEEee
Confidence 9 5668999999999999999999999999999999999999998744 34488
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCC--eEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN--VSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~--V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
.+|..+|++++|++++.+|++++.|+.|++||+.++.......+.++... ++++.|+|++.++++++.|+.+++||+.
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 99999999999999999999999999999999999983214556666555 9999999999999999999999999999
Q ss_pred CCeeEEEeecCCCC---EEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEe
Q 000961 279 KRTGVQTFRREHDR---FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (1208)
Q Consensus 279 ~~~~~~~~~~~~~~---i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~ 355 (1208)
.+.....+..+... +.+...++.+.++.+|+ .|+.|.+|+..++..+..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~--------------------------~d~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS--------------------------EDGSVYVWDSSSGGILQRLE 418 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEe--------------------------CCceEEEEeCCccchhhhhc
Confidence 99999998887764 33444566777777777 58889999999876655443
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
... .. .+..+.++|..+.++..+...|+.+++|...
T Consensus 419 ~h~---~~---~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 419 GHS---KA---AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCC---CC---ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 221 13 7889999999998877766678899999764
No 61
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=1.4e-26 Score=251.04 Aligned_cols=428 Identities=15% Similarity=0.215 Sum_probs=317.7
Q ss_pred cCCCCEEEEEEeC--CCCEEEEEe--cCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 7 TKSNRVKGLSFHS--KRPWILASL--HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 7 ~h~~~V~~lafsp--dg~~Lasg~--~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
.-...|+|++||+ .|.+|.... .+..+.|||+..+......+..+..|....|+|.++.++.....|.+..|+.+.
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 4567899999998 355555542 346799999999988888888888999999999888777666779999999988
Q ss_pred CeEEEE---EccC-CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 83 HRCLFT---LLGH-LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 83 ~~~~~~---l~~h-~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
+....+ +..+ ...|.|++|.++|. +++|..+|.|.||+..+.+..+....|++.|.+++...+|. |++|+.|+.
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRk 309 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRK 309 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccce
Confidence 765543 3332 36899999999996 88999999999999988888777779999999999998886 556999999
Q ss_pred EEEEECCCCccccc--cC------------CCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 159 VRVWDIGALRKKTV--SP------------ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 159 V~vwdl~~~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
|..||- ..++... .| ....+.-...+..++|+..........+|......++.+|+.+++++++.
T Consensus 310 i~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq 388 (626)
T KOG2106|consen 310 IILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ 388 (626)
T ss_pred EEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC
Confidence 999993 2222111 01 11122223445566677777777788999999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCE
Q 000961 225 DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNL 304 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~ 304 (1208)
|+.+++|+ ..+. .--+....++.|+.|+|.| .++.|+..|...+.|..+...+.. +..+.++.++.++|+|.+
T Consensus 389 dk~v~lW~--~~k~---~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 389 DKHVRLWN--DHKL---EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI-HTDNEQLSVVRYSPDGAF 461 (626)
T ss_pred cceEEEcc--CCce---eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE-EecCCceEEEEEcCCCCE
Confidence 99999999 3332 2222335678999999999 999999999999999998655544 444889999999999999
Q ss_pred EEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEE
Q 000961 305 LAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICS 384 (1208)
Q Consensus 305 la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~ 384 (1208)
+|+|+. |+.|++|.+..+.......-+..+ . +|+.+.||+|++++...+
T Consensus 462 lAvgs~--------------------------d~~iyiy~Vs~~g~~y~r~~k~~g--s---~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 462 LAVGSH--------------------------DNHIYIYRVSANGRKYSRVGKCSG--S---PITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EEEecC--------------------------CCeEEEEEECCCCcEEEEeeeecC--c---eeEEeeecCCCceEEecc
Confidence 999984 666777777664443222222222 3 999999999999875544
Q ss_pred ecCCCEEEEEEccCCCCCCCcc----------------c-ccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-C---
Q 000961 385 DVDGGSYELYVIPKDSIGRGDS----------------V-QDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-N--- 443 (1208)
Q Consensus 385 ~~~~g~v~l~~l~~~~~~~~~~----------------~-~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~--- 443 (1208)
.|-.+-.| .+.... +... . ...+...+..++-+...++++++.+.|+|+++... .
T Consensus 511 --~d~eiLyW-~~~~~~-~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 511 --GDYEILYW-KPSECK-QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred --CceEEEEE-ccccCc-ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 45567778 332211 1100 0 01122234445555667889999989999999876 2
Q ss_pred ceeeeecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEc
Q 000961 444 EVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDL 479 (1208)
Q Consensus 444 ~~~~~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl 479 (1208)
.....+.+|+ .|.+++|..+...+++. |.+|..|++
T Consensus 587 A~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 APSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 2344555666 89999999988888774 889999986
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3e-28 Score=256.23 Aligned_cols=279 Identities=25% Similarity=0.455 Sum_probs=235.1
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC---EEEEEECCCeEEEEECCCC
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP---LFVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~---~Lasgs~Dg~I~vWd~~~~ 83 (1208)
-|.+.|.++... ++++++|+.||.+++|| ..|+....+.+|.++|.+++|.-..+ .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 477888888887 78999999999999999 68999999999999999999965444 5999999999999998876
Q ss_pred eEE----EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-------------------------CeEEEEEecC
Q 000961 84 RCL----FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-------------------------RTCISVLTGH 134 (1208)
Q Consensus 84 ~~~----~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-------------------------~~~i~~l~~h 134 (1208)
... ..-.||...|.++...+++..+++||.|.+|.||+..+ +.++.++.||
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 432 23359999999999999999999999999999999321 2456778899
Q ss_pred CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC
Q 000961 135 NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (1208)
Q Consensus 135 ~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (1208)
..+|.++.|++ ...+++++.|.+|++||+.++..... + .....++++.++|
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~---------------------------~-~~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST---------------------------L-TTNKSLNCISYSP 310 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceee---------------------------e-ecCcceeEeeccc
Confidence 99999999997 67899999999999999988664421 1 2346789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce-eEEEeecCcCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe-eEEEeecCCC
Q 000961 215 TLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRT-GVQTFRREHD 291 (1208)
Q Consensus 215 ~g~~L~sgs~dg~I~iwd~~~~~~-~~~~~l~~h~~~V~~l~~sp~g-~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~ 291 (1208)
...+|++|+.|..+++||.+++.. ....++.+|.+.|.++.|+|.. ..|++++.|+++++||+++.+ ++..+.+|.+
T Consensus 311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D 390 (423)
T KOG0313|consen 311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND 390 (423)
T ss_pred ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence 999999999999999999987643 3467889999999999999955 568899999999999999887 8999999999
Q ss_pred CEEEEEEeCCCCEEEEEECCCeeeEe
Q 000961 292 RFWILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 292 ~i~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
.|.++.|...+.++..|.|+.+.+++
T Consensus 391 Kvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 391 KVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred eEEEEeccCCceEEeccCcceEEEec
Confidence 99999999655444444555555543
No 63
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=264.73 Aligned_cols=705 Identities=15% Similarity=0.124 Sum_probs=464.3
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEe--cccccCEEEEEEEcCCCEEEEEECCCeEEEE
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF--DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l--~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1208)
|-++|+||+..|.-+.|+.+.+.|-++..+|.|.||-+-.|.-.... .-..+.|.+++|+.+|..++....||.|.|=
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 55789999999999999999999999999999999998777654433 2356679999999999999999999999988
Q ss_pred ECCCCeEE-EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-------eEEE----EEecCCCCEEEEEEe--
Q 000961 79 NYKMHRCL-FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-------TCIS----VLTGHNHYVMCASFH-- 144 (1208)
Q Consensus 79 d~~~~~~~-~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-------~~i~----~l~~h~~~V~~l~~~-- 144 (1208)
.++..+.- ..+++ .....+.|++|...++.+-..|.+.++|-+.. .+.. .+......+..+.|.
T Consensus 143 svdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g 220 (1189)
T KOG2041|consen 143 SVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG 220 (1189)
T ss_pred eeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence 87643321 11221 22347899999998888888999999997642 1211 122223346666664
Q ss_pred ------eCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCE
Q 000961 145 ------PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218 (1208)
Q Consensus 145 ------p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 218 (1208)
|+...++++...|.+.+-.-.+.... .+-...-.+..+.|+|+|..
T Consensus 221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P----------------------------vv~dtgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEP----------------------------VVVDTGMKIVGAKWNHNGAV 272 (1189)
T ss_pred ccccCCCCCCEEEEEEcCceehhhhhcCCCCC----------------------------eEEecccEeecceecCCCcE
Confidence 35578899998888877654332111 11122356788999999999
Q ss_pred EEEEeCC---------CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--------Ce
Q 000961 219 IVSGADD---------RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK--------RT 281 (1208)
Q Consensus 219 L~sgs~d---------g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~--------~~ 281 (1208)
|++++.+ +.|.+|..-... +.++......|++++|-..|-.++.+- |+.|.+=+++. .+
T Consensus 273 LAvcG~~~da~~~~d~n~v~Fysp~G~i---~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~T 348 (1189)
T KOG2041|consen 273 LAVCGNDSDADEPTDSNKVHFYSPYGHI---VGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEET 348 (1189)
T ss_pred EEEccCcccccCccccceEEEeccchhh---eEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeE
Confidence 9998754 356666554433 667777788899999987776665442 34443332221 11
Q ss_pred eEEEeecCC---------------------CCEEEEEEeCCCCEEEEEECCCeee-------------------------
Q 000961 282 GVQTFRREH---------------------DRFWILASHPEMNLLAAGHDSGMIV------------------------- 315 (1208)
Q Consensus 282 ~~~~~~~~~---------------------~~i~~la~sp~~~~la~g~~~gi~v------------------------- 315 (1208)
.+..+.... ....+++++.+.-.++.-.+++.+-
T Consensus 349 vVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD 428 (1189)
T KOG2041|consen 349 VVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLD 428 (1189)
T ss_pred EEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCC
Confidence 111111111 1234455555555555554444321
Q ss_pred EeeCCCcceE-EecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEE
Q 000961 316 FKLERERPAF-AVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELY 394 (1208)
Q Consensus 316 ~~l~~~~~~~-s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~ 394 (1208)
++...-+|.| .+.+..++.++...+.+|.+...+........+... . .-.++...|.| +.++++.
T Consensus 429 ~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rk-e---gr~h~Ddtp~g--------a~d~~l~-- 494 (1189)
T KOG2041|consen 429 YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRK-E---GRFHGDDTPEG--------AQDRTLE-- 494 (1189)
T ss_pred CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcc-c---ccccCCCCccc--------hhhceee--
Confidence 1122223433 344555555577888889877654433222111000 0 00112222322 1222221
Q ss_pred EccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCc-eeeeecCCcceEEEEEeCCccEEEEeC--
Q 000961 395 VIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE-VVKKSILPIAADAIFYAGTGNLLCRAE-- 471 (1208)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~-~~~~l~~~~~v~~i~~s~dg~~Las~d-- 471 (1208)
... .+..+.+++|..++.+ .+++..+...|.|.-+++.+. ...+......+.++.++.+.+.++.-|
T Consensus 495 -ys~-------kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~ 564 (1189)
T KOG2041|consen 495 -YST-------KTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLV 564 (1189)
T ss_pred -ccc-------eeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhh
Confidence 111 1355777788777765 568888888899999999854 444555555899999999988887754
Q ss_pred CeEEEEEcC---CCeEEEEEeC---CCeeEEEECCCCC-EEEEEeCCeEEEEecCc--------cceeeeecceeeeeeE
Q 000961 472 DRVVIFDLQ---QRLVLGDLQT---PFVKYVVWSNDME-SVALLSKHAIIIASKKL--------VHQCTLHETIRVKSGA 536 (1208)
Q Consensus 472 g~v~lwdl~---~~~~l~~~~~---~~v~~v~ws~dg~-~la~~s~~~i~i~~~~~--------~~~~~~~e~~~iks~~ 536 (1208)
|.+.+.|+. +|..+..+.. ..|..+.|..|+. .+|...+..+||++.+. +.++. .|...|+|+.
T Consensus 565 gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~s~sGyIc~-FedLeitsVl 643 (1189)
T KOG2041|consen 565 GVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPSSVSGYICL-FEDLEITSVL 643 (1189)
T ss_pred ceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccccccceEEE-eeceEEEEEE
Confidence 888888876 4555543332 6699999998874 66777888899987542 22222 2345566666
Q ss_pred EecCCeEEEecCCeeeeEecCCceeEEEeccccE----------EEEEEeCCEEEEEecCCceEEEEcChhh--------
Q 000961 537 WDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPI----------YITKVSGNTIFCLDRDGKNRAIVIDATE-------- 598 (1208)
Q Consensus 537 wd~~~~~iy~t~~~i~y~l~~g~~g~i~~l~~~~----------~l~~~~~~~l~~l~r~~~~~~~~ld~~e-------- 598 (1208)
.| .++.+..+.-|-++++-.....+....-+ |+-.-.++++|-+-.+..++.+.++..|
T Consensus 644 ld---~Il~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 644 LD---KILLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred Hh---hHhcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 54 12222222222222221111111111111 1111135667766666777777777777
Q ss_pred -----HHHHHhhcccccccchHHHHHHHhCCChhhhhccccCcchh---hHHHHhcCCHHHHHHHHHHhCC-------hh
Q 000961 599 -----YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTR---FNLALESGNIQIAVASAKEIDE-------KD 663 (1208)
Q Consensus 599 -----~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~~~~~~---f~lal~~g~~~~A~~~a~~~~~-------~~ 663 (1208)
+.+.++.+-+..+..+.|..|. |..|+|..++-|.+.| -+|.++.|||-+.+++.+.-.. ..
T Consensus 721 Y~Gik~vkrl~~i~s~~~q~aei~~~~---g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~ 797 (1189)
T KOG2041|consen 721 YAGIKLVKRLRTIHSKEQQRAEISAFY---GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKED 797 (1189)
T ss_pred ccchhHHHHhhhhhhHHHHhHhHhhhh---cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHH
Confidence 3455666655555556677765 7779999988877655 3788889999999999887321 57
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCc-hhhHHHHHhcCCHHHHHHHHHH
Q 000961 664 HWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDV-MGQFHNALYLGDVKERVKILES 742 (1208)
Q Consensus 664 ~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~-~~~~~~al~lgd~~~A~~i~~~ 742 (1208)
.|+.+|+.......|+.|.++|.++++.+...-+|....+++.|++++...-..... ...++.+..-|+.++|++.|++
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999998855443333 2455677888999999999999
Q ss_pred cCCChHHHHHHHhcCChHHHHHHHHHcC
Q 000961 743 AGHLPLAYITASVHGLQDVAERLAAELG 770 (1208)
Q Consensus 743 ~g~~~~A~~~a~~~g~~~~a~~l~~~~~ 770 (1208)
.+++..|+.+...+++|.+|.+|++.+.
T Consensus 878 ~s~pkaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 878 RSLPKAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999864
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-27 Score=236.62 Aligned_cols=287 Identities=17% Similarity=0.291 Sum_probs=241.4
Q ss_pred EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000961 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1208)
..+.+..|.++|+.+.|+-+|+|.++++.|.+|++||...+.++.++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 123 ~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
.+|+.++.+.+|...|..+.|+.+...+++|+.|.++++||.++..... ..++..
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-------------------------iQilde 143 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-------------------------IQILDE 143 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-------------------------cchhhh
Confidence 9999999999999999999999999999999999999999998755432 224555
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 000961 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~ 282 (1208)
...+|.++..+. ..|+.|+.||+++.||++.+.. . ..-...+|++++|+++++..+.++-|+++++.|-.+|+.
T Consensus 144 a~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l--~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 144 AKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTL--S--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred hcCceeEEEecc--cEEEeeccCCcEEEEEeeccee--e--hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 667788887764 5799999999999999999875 2 223456899999999999999999999999999999999
Q ss_pred EEEeecCCCCEEEE--EEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCC
Q 000961 283 VQTFRREHDRFWIL--ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1208)
Q Consensus 283 ~~~~~~~~~~i~~l--a~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1208)
++.+++|...-..+ +++.....+++|+ .||.+.+||+..+..+..++.. +
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sgS--------------------------EDG~Vy~wdLvd~~~~sk~~~~--~ 269 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGS--------------------------EDGKVYFWDLVDETQISKLSVV--S 269 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEecc--------------------------CCceEEEEEeccceeeeeeccC--C
Confidence 99999988764443 3444444556665 5888999999987765444332 2
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
. . .+.++++.|.-..++++++ +....|.
T Consensus 270 ~-v---~v~dl~~hp~~~~f~~A~~---~~~~~~~ 297 (307)
T KOG0316|consen 270 T-V---IVTDLSCHPTMDDFITATG---HGDLFWY 297 (307)
T ss_pred c-e---eEEeeecccCccceeEecC---Cceecee
Confidence 2 1 4789999999888888776 4555554
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=238.15 Aligned_cols=277 Identities=16% Similarity=0.279 Sum_probs=242.4
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEE--ecccccCEEEEEEEcCC-CEEEEEECCCeEEEEEC
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~--l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~ 80 (1208)
.+++|...|.+++|+-+|..|++|+.|+++.+|++..++.... ..+|.+.|-.++|+|.. ++|++++.|.+|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 5678999999999999999999999999999999987765544 35899999999998855 48999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
.++++........+.| -+.|+|+|.+++.++.|..|.+.|.++.+.....+ ....+.-++|+-++++++..+..|+|.
T Consensus 95 r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 95 RSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred ccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999998887544444 57899999999999999999999998887766554 345677889997778888777789999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~ 240 (1208)
|.....++.. ..+..|.....|+.|+|+|+++++|+.|..+.+||+..--+
T Consensus 173 ILsypsLkpv---------------------------~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC-- 223 (313)
T KOG1407|consen 173 ILSYPSLKPV---------------------------QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC-- 223 (313)
T ss_pred EEeccccccc---------------------------cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh--
Confidence 9988765543 36778999999999999999999999999999999998776
Q ss_pred EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCC
Q 000961 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (1208)
Q Consensus 241 ~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~g 312 (1208)
+..+..+.-+|..++|+-+|++||++|+|..|-|=++.+|..+..++ ..++...++|+|...+||.++++.
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 78888899999999999999999999999999999999999998887 556788999999999999887654
No 66
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.8e-25 Score=247.44 Aligned_cols=484 Identities=16% Similarity=0.206 Sum_probs=351.8
Q ss_pred eecC-CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC
Q 000961 5 FETK-SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 5 l~~h-~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1208)
+.++ ...|.+++|++ +..|.+.+.+|.|.-||+.+++....++...++|.+++.+|.+..++.|++||.+...+...+
T Consensus 64 i~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 64 IHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred EecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence 4444 46799999995 556788889999999999999999999999999999999999999999999998888888877
Q ss_pred eEEE--EEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe--------cCCCCEEEEEEeeCCCEEEEE
Q 000961 84 RCLF--TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT--------GHNHYVMCASFHPKEDLVVSA 153 (1208)
Q Consensus 84 ~~~~--~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~--------~h~~~V~~l~~~p~~~~l~s~ 153 (1208)
+..+ .+...++.|.++.|+|++..|++|+.||.|++||..++..+...+ +..--|+++.|-.+ ..|++|
T Consensus 143 ~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sg 221 (691)
T KOG2048|consen 143 KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASG 221 (691)
T ss_pred eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEe
Confidence 6554 344567899999999999999999999999999999988776332 12334777777754 579999
Q ss_pred ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000961 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (1208)
Q Consensus 154 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~ 233 (1208)
+..|+|.+||...+.... ....|...|.+++..+++.++++++.|+.|.-|..
T Consensus 222 DS~G~V~FWd~~~gTLiq---------------------------S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQ---------------------------SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred cCCceEEEEcccCcchhh---------------------------hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 999999999987655432 45678999999999999999999999999999988
Q ss_pred CCCce-eE-EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe-ecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 234 NETKA-WE-VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 234 ~~~~~-~~-~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~-~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
.+.+. |. ......|...|.+++..++ .+++|+.|..+.+-........... ......-..+...|..+++..-..
T Consensus 275 ~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~ 352 (691)
T KOG2048|consen 275 TTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKA 352 (691)
T ss_pred cCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecc
Confidence 77654 32 2334578889999999876 7999999998888655431111000 000000112334444455555555
Q ss_pred CCeeeEeeCCC-----------------c------ceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcC
Q 000961 311 SGMIVFKLERE-----------------R------PAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQS 367 (1208)
Q Consensus 311 ~gi~v~~l~~~-----------------~------~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (1208)
.++.+|.+... . .+.+++|+.+++..-..+++|.++....+....++.... . ...
T Consensus 353 h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~-~-~~~ 430 (691)
T KOG2048|consen 353 HGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPL-A-LLD 430 (691)
T ss_pred ccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchh-h-hcc
Confidence 55555555443 1 167889999999988888888887744444443333221 1 226
Q ss_pred CeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccc-cccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCcee
Q 000961 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQ-DAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVV 446 (1208)
Q Consensus 368 i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~-~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~ 446 (1208)
...+.|+-|++.+++++. +...+..+++......+..... ......|..++.|++|.+++..+..|.|.+|++++...
T Consensus 431 a~~i~ftid~~k~~~~s~-~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 431 ASAISFTIDKNKLFLVSK-NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLES 509 (691)
T ss_pred ceeeEEEecCceEEEEec-ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEccccee
Confidence 678899999998888773 5567888887766554443211 23456788999999999999999899999999997766
Q ss_pred eeec--CCcceEEEEEeCC--ccEE-EEeCCeEEEEEcCCCeEEE-------EEeC------CCeeEEEECCCC-CEEEE
Q 000961 447 KKSI--LPIAADAIFYAGT--GNLL-CRAEDRVVIFDLQQRLVLG-------DLQT------PFVKYVVWSNDM-ESVAL 507 (1208)
Q Consensus 447 ~~l~--~~~~v~~i~~s~d--g~~L-as~dg~v~lwdl~~~~~l~-------~~~~------~~v~~v~ws~dg-~~la~ 507 (1208)
+.+. .+..++.+.++|. ++++ ++++++++=||++..+... .+.. .++..+.|++.. ..+++
T Consensus 510 ~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~ 589 (691)
T KOG2048|consen 510 HLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIV 589 (691)
T ss_pred ecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEE
Confidence 6555 2348999999964 4444 4479999999995443211 1111 567778887644 56666
Q ss_pred EeCCeEEEEecCccc
Q 000961 508 LSKHAIIIASKKLVH 522 (1208)
Q Consensus 508 ~s~~~i~i~~~~~~~ 522 (1208)
-+.+-+++.+.+...
T Consensus 590 ~~a~w~~~id~~~~l 604 (691)
T KOG2048|consen 590 YDAHWSCLIDFSLPL 604 (691)
T ss_pred EcCcEEEEEecCCCC
Confidence 666777777666443
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.8e-26 Score=295.87 Aligned_cols=305 Identities=15% Similarity=0.268 Sum_probs=239.3
Q ss_pred CCeEEEEECCCCeEEEEe-----cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC----e----EEEEEccCCCCE
Q 000961 30 SGVIQLWDYRMGTLIDRF-----DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH----R----CLFTLLGHLDYI 96 (1208)
Q Consensus 30 dg~I~iWd~~~g~~i~~l-----~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~----~----~~~~l~~h~~~I 96 (1208)
+|.+++|+..+......+ ..|.+.|++++|+|++++|++|+.|+.|+||+..+. . ....+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677889998776554443 358999999999999999999999999999997531 1 222333 35679
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee-CCCEEEEEECCCeEEEEECCCCccccccC
Q 000961 97 RTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (1208)
Q Consensus 97 ~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~ 174 (1208)
.+++|++. +.+|++++.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.+....
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~---- 611 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI---- 611 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE----
Confidence 99999874 67999999999999999999999999999999999999997 6789999999999999999764321
Q ss_pred CCcceeeccccccccccccceEEEEEeccCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEE
Q 000961 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSC 253 (1208)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~ 253 (1208)
..+.. ...+.++.|+ +++.+|++|+.||.|++||+.+.+. .+..+.+|...|++
T Consensus 612 -----------------------~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~ 666 (793)
T PLN00181 612 -----------------------GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSY 666 (793)
T ss_pred -----------------------EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-cceEecCCCCCEEE
Confidence 12333 3578899995 5799999999999999999987652 25667899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCC------CeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEe
Q 000961 254 VMFHAKQDIIVSNSEDKSIRVWDVTK------RTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (1208)
Q Consensus 254 l~~sp~g~~l~sgs~dg~I~vwd~~~------~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~ 327 (1208)
+.|. ++.+|++++.|++|++||+.. ...+..+.+|...+..++++|++.++++|+.
T Consensus 667 v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~----------------- 728 (793)
T PLN00181 667 VRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE----------------- 728 (793)
T ss_pred EEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-----------------
Confidence 9997 678999999999999999874 3567788889899999999999999999984
Q ss_pred cCCEEEEEeCCeEEEEEccCCcceeeEeec---------CCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEc
Q 000961 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIR---------RPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (1208)
Q Consensus 328 ~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~---------~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l 396 (1208)
|+.+.+|+............. ...+ ...|.+++|+|++..++++ +.+|.|++|++
T Consensus 729 ---------D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~V~~v~ws~~~~~lva~--~~dG~I~i~~~ 792 (793)
T PLN00181 729 ---------TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA---SQFISSVCWRGQSSTLVAA--NSTGNIKILEM 792 (793)
T ss_pred ---------CCEEEEEECCCCCceEEEecccCCcccccccCCC---CcEEEEEEEcCCCCeEEEe--cCCCcEEEEec
Confidence 344445544332211111100 0111 2368999999999976543 35789999985
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1e-25 Score=253.27 Aligned_cols=494 Identities=16% Similarity=0.251 Sum_probs=338.6
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC---EEEEEECCCeEEEEECCC--CeEEEEE
Q 000961 15 LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP---LFVSGGDDYKIKVWNYKM--HRCLFTL 89 (1208)
Q Consensus 15 lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~---~Lasgs~Dg~I~vWd~~~--~~~~~~l 89 (1208)
.+|.|.+ .+|.| ....|.+||..+......+.+|..+|+|+.|-|+.. ++++|+.|+.|++|.++. -.++.++
T Consensus 20 ~sw~~~~-~vafG-a~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~ 97 (764)
T KOG1063|consen 20 SSWGPGG-LVAFG-AGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI 97 (764)
T ss_pred ccccccc-eEEec-CCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee
Confidence 3455544 34444 577899999888878888999999999999998887 899999999999999973 3456677
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC--------------------------------------------
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-------------------------------------------- 125 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-------------------------------------------- 125 (1208)
.+|...+.++ +.......+.+.|+++.+||.+..
T Consensus 98 ~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 98 QGHCKECVCV--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred cCcceeEEEE--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 7766555444 333333333367888888887432
Q ss_pred ------eEEEEEecCCCCEEEEEEeeCC---CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccc-c--
Q 000961 126 ------TCISVLTGHNHYVMCASFHPKE---DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV-D-- 193 (1208)
Q Consensus 126 ------~~i~~l~~h~~~V~~l~~~p~~---~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 193 (1208)
+.+..+.||.+.|.+++|...+ -+|+++|.|..||+|.+.-................. +...+... .
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~-~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLS-NLPVFMILEEIQ 254 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccccc-CCceeeeeeeEE
Confidence 2345567899999999998755 488999999999999975432111000000000000 01111100 0
Q ss_pred --ceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-e----EEEeecCcCCCeEEEEEccCCCEEEEE
Q 000961 194 --AVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W----EVDTLRGHMNNVSCVMFHAKQDIIVSN 266 (1208)
Q Consensus 194 --~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~-~----~~~~l~~h~~~V~~l~~sp~g~~l~sg 266 (1208)
......+.||+..|.++.|+|.+..|++++.|.++.+|...+..- | .+....+.........|+|+++.+++-
T Consensus 255 ~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence 011124569999999999999999999999999999999876632 2 122333445568899999999999999
Q ss_pred eCCCcEEEEeCCCC---eeEEEeecCCCCEEEEEEeCCCCEEEE-EECCCeeeEeeCC--------Ccc--------eEE
Q 000961 267 SEDKSIRVWDVTKR---TGVQTFRREHDRFWILASHPEMNLLAA-GHDSGMIVFKLER--------ERP--------AFA 326 (1208)
Q Consensus 267 s~dg~I~vwd~~~~---~~~~~~~~~~~~i~~la~sp~~~~la~-g~~~gi~v~~l~~--------~~~--------~~s 326 (1208)
+..|..++|..... .....+.+|-+.|..++|+|.|.++.+ |.|...++|.--. .|| +.+
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred cccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeee
Confidence 99999999983221 233446688899999999999997664 5666777765441 122 222
Q ss_pred e-cCCEEEEE--eCCeEEEEEccC----------C------------cceeeEee-------------------------
Q 000961 327 V-SGDSLFYA--KDRFLRYYEFST----------Q------------KDTQVIPI------------------------- 356 (1208)
Q Consensus 327 ~-~~~~L~~~--~d~~i~v~d~~~----------~------------~~~~~~~~------------------------- 356 (1208)
. .++.-++. .++.+|+|+... + ..++.+-+
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 2 22444443 777788887532 0 00000000
Q ss_pred -------------------------cCCCCCCCCcCCeEEEEcCCCCEEEEEEec---CCCEEEEEEccCCCCCCCcccc
Q 000961 357 -------------------------RRPGSTSLNQSPRTLSYSPTENAVLICSDV---DGGSYELYVIPKDSIGRGDSVQ 408 (1208)
Q Consensus 357 -------------------------~~~~~~~~~~~i~~l~~spdg~~llv~~~~---~~g~v~l~~l~~~~~~~~~~~~ 408 (1208)
+-.|| ...|.+++.+|+|+.++.+..+ +...|++|+........ .+
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH---GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---~L 568 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGH---GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---EL 568 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccC---ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---ee
Confidence 00111 3367899999999987766554 34578899877654322 47
Q ss_pred cccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCcee-----eeecCCc-ceEEEEEeCCccEEEE--eCCeEEEEEcC
Q 000961 409 DAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVV-----KKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQ 480 (1208)
Q Consensus 409 ~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~-----~~l~~~~-~v~~i~~s~dg~~Las--~dg~v~lwdl~ 480 (1208)
.+|.-.|+.++||||++||++.+.|.++.+|+...... ..++.|. -|.+..|+|++.++++ .|.+|.+|..+
T Consensus 569 ~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 79999999999999999999999999999999873322 2245566 6788889999998877 49999999998
Q ss_pred CC--eEEEEEeC----CCeeEEEECC-C----CCEEEEEeCCe-EEEEecC
Q 000961 481 QR--LVLGDLQT----PFVKYVVWSN-D----MESVALLSKHA-IIIASKK 519 (1208)
Q Consensus 481 ~~--~~l~~~~~----~~v~~v~ws~-d----g~~la~~s~~~-i~i~~~~ 519 (1208)
.. +.+..+.. ..|+.++|.+ + +..++++-..+ |++|+..
T Consensus 649 ~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 649 DLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred CchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 88 44444322 5688888865 2 23667777766 8888755
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-27 Score=239.49 Aligned_cols=279 Identities=14% Similarity=0.255 Sum_probs=239.6
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1208)
.++||..+++.+.|+.+|.+|.+++.|.++.||-..+|+.+.++.+|.+.|.|++.+-+.+++++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEECC-------CCeEEEEEecCCCCEEEEEEeeCCCEEE
Q 000961 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQ-------SRTCISVLTGHNHYVMCASFHPKEDLVV 151 (1208)
Q Consensus 84 ~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D-----g~I~iwd~~-------s~~~i~~l~~h~~~V~~l~~~p~~~~l~ 151 (1208)
+++.++. ...+|+.+.|++++++++.+.++ +.|.++|++ +.++...+..+.+.++.+.|.|-++.|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999997 56789999999999988877654 679999987 4566788888889999999999999999
Q ss_pred EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 000961 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1208)
Q Consensus 152 s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iw 231 (1208)
+|..||.|..||.+++... ......|...|+.++++|+..++++++.|.+-++|
T Consensus 164 ~Ghe~G~is~~da~~g~~~--------------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKEL--------------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred EecCCCcEEEEEcccCcee--------------------------eechhhhccccccccccCCcceEEecccCccceee
Confidence 9999999999999986532 22445688899999999999999999999999999
Q ss_pred ECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcE--------------EEEeCCCCeeEEEeecCCCCEEEEE
Q 000961 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSI--------------RVWDVTKRTGVQTFRREHDRFWILA 297 (1208)
Q Consensus 232 d~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I--------------~vwd~~~~~~~~~~~~~~~~i~~la 297 (1208)
|+.+-.. +.++ ....+|.+.+++|...+++.|+..... ++|++-..+.+..+++|-++|.+++
T Consensus 218 D~~tl~v--~Kty-~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA 294 (327)
T KOG0643|consen 218 DVRTLEV--LKTY-TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA 294 (327)
T ss_pred eccceee--EEEe-eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence 9998875 3333 346789999999988888777643222 2222222334556778999999999
Q ss_pred EeCCCCEEEEEECCC
Q 000961 298 SHPEMNLLAAGHDSG 312 (1208)
Q Consensus 298 ~sp~~~~la~g~~~g 312 (1208)
+||+|+..++|+.+|
T Consensus 295 fhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDG 309 (327)
T ss_pred ECCCCcccccCCCCc
Confidence 999999999998644
No 70
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.1e-28 Score=265.15 Aligned_cols=291 Identities=20% Similarity=0.370 Sum_probs=245.1
Q ss_pred eEEEEecccccCEEEEEEEc-CCCEEEEEECCCeEEEEECCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~-~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~i 119 (1208)
+.++.+.+|...|+++.|.| .+.+|++++-|+.|+||++.. +++++++.+|..+|+.++|+++|..++|+|.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 56778899999999999999 889999999999999999876 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 120 WNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 120 wd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++...
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq--------------------------- 336 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ--------------------------- 336 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---------------------------
Confidence 9999999999987 45678999999999 899999999999999999977544
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
....|-+.|..+.|-++|+++++.++|+.++||+....-... .....+.....++..+|++++++.-+.|+.|.++.+.
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-hhcchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 345688999999999999999999999999999998776421 1223334456789999999999999999999999865
Q ss_pred CCeeE---EEeecCC--CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 279 KRTGV---QTFRREH--DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 279 ~~~~~---~~~~~~~--~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
..-.. ..|.+|. +--..+.|||||.+|++|. .+|.+.+||..+.+....
T Consensus 416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd--------------------------sdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD--------------------------SDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred cccccCHhhhhcceeccCceeeEEEcCCCCeEEeec--------------------------CCccEEEeechhhhhhhc
Confidence 43222 2344443 3356788999999999998 477888999999776554
Q ss_pred EeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
+... ...+..+.|+|.....+++++ -+|.|.+|+
T Consensus 470 lkah-------~~~ci~v~wHP~e~Skvat~~-w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LKAH-------DQPCIGVDWHPVEPSKVATCG-WDGLIKIWD 503 (503)
T ss_pred cccC-------CcceEEEEecCCCcceeEecc-cCceeEecC
Confidence 4322 338899999999888777766 788999985
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2.6e-28 Score=242.58 Aligned_cols=288 Identities=18% Similarity=0.323 Sum_probs=254.9
Q ss_pred EeecCCCCEEEEEEeC---CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 4 KFETKSNRVKGLSFHS---KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 4 ~l~~h~~~V~~lafsp---dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
...||+.+|..++||| +|-+|++++.||.=.+-+-.+|.-+.+|.+|.+.|.+..++.+-.+-++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 5789999999999987 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
-+|..+.++. |..-|.+++|+.|.++|++|+.+..+||+|++.. .+...+.+|.+.|..+.|....+.|++++.|++|
T Consensus 89 ~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 89 VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 9999999887 9999999999999999999999999999999864 3556788999999999999999999999999999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
|+||.+++...+. + ....+|+++.++++|++|.++ ..+.|++||..+-..
T Consensus 168 RLWD~rTgt~v~s---------------------------L-~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~- 217 (334)
T KOG0278|consen 168 RLWDHRTGTEVQS---------------------------L-EFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL- 217 (334)
T ss_pred EEEEeccCcEEEE---------------------------E-ecCCCCcceeeccCCCEEEEe-cCceeEEeccccccc-
Confidence 9999998765431 1 245679999999999866554 467799999998774
Q ss_pred EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe-ecCCCCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 240 ~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~-~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l 318 (1208)
+ .-.....+|.+.+++|+...+++|++|..++.||..++..+..+ ++|.++|.++.|+|+|...|+|+.
T Consensus 218 -l-Ks~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE-------- 287 (334)
T KOG0278|consen 218 -L-KSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE-------- 287 (334)
T ss_pred -e-eeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC--------
Confidence 2 23334578999999999999999999999999999999999886 899999999999999999999994
Q ss_pred CCCcceEEecCCEEEEEeCCeEEEEEccCCcc
Q 000961 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (1208)
Q Consensus 319 ~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~ 350 (1208)
||+|++|....++.
T Consensus 288 ------------------DGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 288 ------------------DGTIRLWQTTPGKT 301 (334)
T ss_pred ------------------CceEEEEEecCCCc
Confidence 77888888776554
No 72
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.96 E-value=3.4e-26 Score=253.81 Aligned_cols=420 Identities=13% Similarity=0.190 Sum_probs=294.2
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
+++++++|.+.|.|++|+.||+++|+|+.|..|.+|+-+-.- +-.+ .|...|.|+.|+|-...|+|++-+ ..-+|+.
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 468899999999999999999999999999999999854222 2223 699999999999999999999864 5778987
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCEEEEEEeeCC-----CEEEE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMCASFHPKE-----DLVVS 152 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l---~~h~~~V~~l~~~p~~-----~~l~s 152 (1208)
....... . .....|.+++|..||++++.|-.+|+|.|-|- +++....+ .|.+++|.+++|+|.. +.+++
T Consensus 122 ~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 122 EQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 6543222 1 23457889999999999999999999999975 44433333 3578899999999963 57888
Q ss_pred EECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000961 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd 232 (1208)
.....++.++.+++..... -..-.-.-.|+.+.|+|.+++.|+.|+.+++|.
T Consensus 199 ~DW~qTLSFy~LsG~~Igk----------------------------~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSGKQIGK----------------------------DRALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred EeccceeEEEEecceeecc----------------------------cccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 8899999999887622110 011122346899999999999999999999997
Q ss_pred CCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe-------------------ecCCCCE
Q 000961 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF-------------------RREHDRF 293 (1208)
Q Consensus 233 ~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~-------------------~~~~~~i 293 (1208)
-..-. +.++......|+.++.+|++++++.|+.||+|..|++...+.-... .+...+|
T Consensus 251 R~Gvr---LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrI 327 (1081)
T KOG1538|consen 251 RDGVR---LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRI 327 (1081)
T ss_pred ecCeE---EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeee
Confidence 55433 6667677889999999999999999999999999987533211100 0011111
Q ss_pred EE------EEEeCCCCEEEEEECCCeeeEeeCCCcc------------------eEEecCCEEEEEeCCeEEEEEccCCc
Q 000961 294 WI------LASHPEMNLLAAGHDSGMIVFKLERERP------------------AFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1208)
Q Consensus 294 ~~------la~sp~~~~la~g~~~gi~v~~l~~~~~------------------~~s~~~~~L~~~~d~~i~v~d~~~~~ 349 (1208)
.+ ++. -.+.+|+--.+.+.++++..++. .....+++++.+.+..+..+|+..-+
T Consensus 328 kC~DLVkKiai--YrnrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk 405 (1081)
T KOG1538|consen 328 KCKDLVKKIAI--YRNRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVK 405 (1081)
T ss_pred eHHHHHHHHHh--hhhhheecccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchh
Confidence 11 111 13457777777888888876643 44557889999999999999998743
Q ss_pred ceeeEeecCCCCCCCCcCCeEEE--EcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEE
Q 000961 350 DTQVIPIRRPGSTSLNQSPRTLS--YSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFA 427 (1208)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~--~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l 427 (1208)
..... .+ +-|+-+. =.|-|+.-++.+-.+++.+++|--+.-+. .+......|.++..+...+.+
T Consensus 406 ~ReW~-M~--------S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~Pi-----Ll~~~~tAvrClDINA~R~kL 471 (1081)
T KOG1538|consen 406 EREWQ-ME--------SLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPI-----LLLKQATAVRCLDINASRKKL 471 (1081)
T ss_pred hhhhh-HH--------HHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchh-----heecccceeEEeeccCCcceE
Confidence 32110 00 0111111 13555555555555677777775332211 234555678999999888888
Q ss_pred EEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCC-ccEEEE-eCCeEE
Q 000961 428 VLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGT-GNLLCR-AEDRVV 475 (1208)
Q Consensus 428 ~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~d-g~~Las-~dg~v~ 475 (1208)
++..+.++..++|+.++.+. ++ ...+.++.|+.. ..+++. +.|.+.
T Consensus 472 AvVDD~~~c~v~DI~t~elL-~Q-Epg~nSV~wNT~~E~MlcfT~~g~L~ 519 (1081)
T KOG1538|consen 472 AVVDDNDTCLVYDIDTKELL-FQ-EPGANSVAWNTQCEDMLCFTGGGYLN 519 (1081)
T ss_pred EEEccCCeEEEEEccCCceE-ee-cCCCceEEeeccccceEEEecCCceE
Confidence 88887899999999965432 22 226788888865 455544 345443
No 73
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.1e-24 Score=245.25 Aligned_cols=276 Identities=17% Similarity=0.195 Sum_probs=227.3
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g-~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1208)
.+|...-+.|+|.|+|.+|.+++.||.|++|+.... +...++.-+...|.+++- ++.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 479999999999999999999999999999997655 444455447778888776 44599999999999999999888
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEEC
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl 164 (1208)
.-..+....-++++++|+.+|++++.||+|-.|++-+..+......+.+|..+|.++.|+|++++|++.+-||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 77666667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEec-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~ 243 (1208)
.++........- . + .... ....+..++|+|+|..+++.+.|+.|++|+..+........
T Consensus 168 ~~~~~~~tl~~v------------~-------k-~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 168 QDGILSKTLTGV------------D-------K-DNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred ccchhhhhcccC------------C-------c-cccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec
Confidence 876654432210 0 0 0111 14567789999998889999999999999999887632233
Q ss_pred ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEE
Q 000961 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAA 307 (1208)
Q Consensus 244 l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~ 307 (1208)
...+...++.+.|+|+|.|||+++.||.|.|||+.+... ......|.+++|.|+.+.+..
T Consensus 228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEE
Confidence 334555699999999999999999999999999987221 334467899999998876543
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-26 Score=231.97 Aligned_cols=307 Identities=16% Similarity=0.262 Sum_probs=247.9
Q ss_pred ecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 000961 47 FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126 (1208)
Q Consensus 47 l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~ 126 (1208)
+.+|+.|++.+.++.+|.+|.+++.|.+..||-..+|+.+.++.||.+.|+++....+.+.+++|+.|.++++||+.+|+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 56899999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCEEEEEEeeCCCEEEEEECC-----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 127 CISVLTGHNHYVMCASFHPKEDLVVSASLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 127 ~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D-----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
++..++ ...+|..+.|+++|++++..+.+ +.|.++|++....... ...+.+.+.
T Consensus 86 ~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--------------------s~ep~~kI~ 144 (327)
T KOG0643|consen 86 QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID--------------------SEEPYLKIP 144 (327)
T ss_pred EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc--------------------ccCceEEec
Confidence 999998 46789999999999988877643 5699999876332111 112344566
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 202 ~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
.+...++.+-|.|-++.|++|..||.|.+||.++++.. +..-..|...|+.+.++|+..++++++.|.+-++||+.+.+
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL-VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-eechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence 77899999999999999999999999999999998652 66678899999999999999999999999999999999999
Q ss_pred eEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCC--eEEEEEccCCcceeeEeecCC
Q 000961 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDR--FLRYYEFSTQKDTQVIPIRRP 359 (1208)
Q Consensus 282 ~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~--~i~v~d~~~~~~~~~~~~~~~ 359 (1208)
.+.++. ...++.+.+++|....++.|+....+-...... +.+ .-++|++--.+.+ -.++
T Consensus 224 v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~--------------r~GKFEArFyh~i~eEEi--grvk-- 284 (327)
T KOG0643|consen 224 VLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTST--------------RAGKFEARFYHLIFEEEI--GRVK-- 284 (327)
T ss_pred eEEEee-ecccccceecccccceEEecCCceeeeeeeecc--------------cccchhhhHHHHHHHHHh--cccc--
Confidence 999887 446799999999888888776433211110000 111 1233443322221 1122
Q ss_pred CCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 360 GSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 360 ~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
+ |.++|.+++|+|+|+.. +++.++|.|++......
T Consensus 285 G---HFGPINsvAfhPdGksY--sSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 285 G---HFGPINSVAFHPDGKSY--SSGGEDGYVRLHHFDSN 319 (327)
T ss_pred c---cccCcceeEECCCCccc--ccCCCCceEEEEEeccc
Confidence 2 36799999999999954 77889999999877643
No 75
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=2.3e-28 Score=252.80 Aligned_cols=280 Identities=24% Similarity=0.447 Sum_probs=232.6
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i 128 (1208)
.....|.|+.+ |...+++|..|.+|+|||..+..++..+.||++.|.|+.|.. ..|++||.|.+|+|||+++|+++
T Consensus 195 e~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 195 ENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred ccCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchh
Confidence 35567999988 455799999999999999999999999999999999999864 48999999999999999999999
Q ss_pred EEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 129 SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 129 ~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
.++-+|...|..+.|+ ..++++++.|.++.|||+...... .+..++.||...|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i------------------------t~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI------------------------TLRRVLVGHRAAVN 324 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH------------------------HHHHHHhhhhhhee
Confidence 9999999999999997 569999999999999999774422 23346789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec
Q 000961 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 209 ~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 288 (1208)
.+.|+. +++++++.|++|++|++.+... +.++.+|...|-|+.+. ++++++|++|.+|++||+..|.++..+.+
T Consensus 325 vVdfd~--kyIVsASgDRTikvW~~st~ef--vRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeG 398 (499)
T KOG0281|consen 325 VVDFDD--KYIVSASGDRTIKVWSTSTCEF--VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG 398 (499)
T ss_pred eecccc--ceEEEecCCceEEEEeccceee--ehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhc
Confidence 999975 5999999999999999999998 99999999999999874 89999999999999999999999999999
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCccee-------eEeecCCCC
Q 000961 289 EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ-------VIPIRRPGS 361 (1208)
Q Consensus 289 ~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~ 361 (1208)
|.+-|.++.|. .+.+++|. .||+|++||+..+.... +..+..
T Consensus 399 HEeLvRciRFd--~krIVSGa--------------------------YDGkikvWdl~aaldpra~~~~~Cl~~lv~--- 447 (499)
T KOG0281|consen 399 HEELVRCIRFD--NKRIVSGA--------------------------YDGKIKVWDLQAALDPRAPASTLCLRTLVE--- 447 (499)
T ss_pred hHHhhhheeec--Cceeeecc--------------------------ccceEEEEecccccCCcccccchHHHhhhh---
Confidence 99999999885 34566665 58899999998865431 111111
Q ss_pred CCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC
Q 000961 362 TSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI 401 (1208)
Q Consensus 362 ~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~ 401 (1208)
+.+.+..+.|. ...++. .+.+.+|-+|++.....
T Consensus 448 --hsgRVFrLQFD--~fqIvs--ssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 448 --HSGRVFRLQFD--EFQIIS--SSHDDTILIWDFLNGPP 481 (499)
T ss_pred --ccceeEEEeec--ceEEEe--ccCCCeEEEEEcCCCCc
Confidence 12366667664 344433 33456899999876543
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=231.11 Aligned_cols=277 Identities=20% Similarity=0.323 Sum_probs=238.1
Q ss_pred EEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE--EccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEE
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWN 121 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~--l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd 121 (1208)
+.+.+|.++|.+++|+-+|..|++|+.|+++.||+++..+.... ..+|.+.|-.++|+|..+ .+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45668999999999999999999999999999999987755543 468999999999998654 899999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
.++++++..+....+.+ -+.|+|+|.+++.++.|..|.+.|.++.+.... .
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~----------------------------~ 144 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNE----------------------------E 144 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeeh----------------------------h
Confidence 99999999887555554 478999999999999999999999988654322 1
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 202 ~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
.....++.++|+-++.+++.....|.|.|.....-+. +..+..|..+..|+.|+|+|+++|+|+.|..+.+||+...-
T Consensus 145 ~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp--v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 145 QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP--VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred cccceeeeeeecCCCCEEEEecCCceEEEEecccccc--ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh
Confidence 2334577889998888888888889999999998776 99999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCC
Q 000961 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGS 361 (1208)
Q Consensus 282 ~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 361 (1208)
+++.+....-+|..++|+.+|++||+++. |..|-+-++.+|..+..++..
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSE--------------------------Dh~IDIA~vetGd~~~eI~~~---- 272 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASE--------------------------DHFIDIAEVETGDRVWEIPCE---- 272 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCc--------------------------cceEEeEecccCCeEEEeecc----
Confidence 99999999999999999999999999995 666777888888776555443
Q ss_pred CCCCcCCeEEEEcCCCCEEEEEEec
Q 000961 362 TSLNQSPRTLSYSPTENAVLICSDV 386 (1208)
Q Consensus 362 ~~~~~~i~~l~~spdg~~llv~~~~ 386 (1208)
++..+++|+|....|+.+.+.
T Consensus 273 ----~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 273 ----GPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ----CCceeEEecCCCceeeEEecC
Confidence 277899999998877776654
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.3e-27 Score=253.93 Aligned_cols=278 Identities=25% Similarity=0.443 Sum_probs=241.0
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
..+.|++++|||..++=.+....-.++||+..+....+++.-....|.+++|-.||++|+.|+..|.|+|+|+++...+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 35789999999987765555567789999998888888888888999999999999999999999999999988877888
Q ss_pred EEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECC
Q 000961 88 TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~ 165 (1208)
.+.+|..+|..+.|+|.+. .+++|++|+.+++||+.+......+.+|+++|.|.+|+|.. ..+++|+.||+|++||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 8999999999999999765 67788999999999999998877899999999999999965 589999999999999998
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~ 245 (1208)
.... ...-..|..+|..+.+-|.|.+|++++. ..|++||+.++... +....
T Consensus 185 ~~~~---------------------------~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~ql-l~~~~ 235 (487)
T KOG0310|consen 185 SLTS---------------------------RVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQL-LTSMF 235 (487)
T ss_pred cCCc---------------------------eeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCcee-hhhhh
Confidence 7431 1134468999999999999999999874 57999999966542 44445
Q ss_pred CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeee
Q 000961 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIV 315 (1208)
Q Consensus 246 ~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v 315 (1208)
.|...|+|+.+..++..|++++-|+.+++||+.+.+.+..+. ..++|.+++.+|+++.+++|..+|+..
T Consensus 236 ~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 236 NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceee
Confidence 599999999999999999999999999999998888888876 567899999999999999998777543
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.3e-27 Score=249.93 Aligned_cols=291 Identities=16% Similarity=0.295 Sum_probs=239.8
Q ss_pred EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC---eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 000961 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~---~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~i 119 (1208)
..+.+..|...|.-+.||++|++|||++.|.+..+|.+... +..+++.+|..+|..+.||||.+++++|+.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34567789999999999999999999999999999987543 457889999999999999999999999999999999
Q ss_pred EECCCCeEEEEEe-cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 120 WNWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 120 wd~~s~~~i~~l~-~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
||+.+|.+...+. +|...+.+++|.|||..+++|+.|+++..||+.+.....
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~--------------------------- 348 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN--------------------------- 348 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc---------------------------
Confidence 9999999887774 456789999999999999999999999999998754321
Q ss_pred EEec-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000961 199 VLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 199 ~~~~-h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
.++ ....|.+++..+||+++++.+.|..|++++..+... ..+.....+|++++.|.+++++++.-.+..+++||+
T Consensus 349 -W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 349 -WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDL 424 (519)
T ss_pred -ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---hccccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence 111 235689999999999999999999999999877653 223445678999999999999999999999999999
Q ss_pred CCCeeEEEeecCCCCEEEE--EEeC-CCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeE
Q 000961 278 TKRTGVQTFRREHDRFWIL--ASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (1208)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~l--a~sp-~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~ 354 (1208)
.....++.+.+|......+ +|.. +..++++|+ .|+.|++|+..+|+.+..+
T Consensus 425 ~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS--------------------------ED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 425 EENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS--------------------------EDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred chhhHHHHhhcccccceEEEeccCCCCcceEEecC--------------------------CCceEEEEEccCCceeEee
Confidence 9888888888776543222 2222 334566665 5889999999999886655
Q ss_pred eecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 355 PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 355 ~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
+ || ...+.+++|+|....++++ +++||+|+||....
T Consensus 479 s----GH---s~~vNcVswNP~~p~m~AS-asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 S----GH---SKTVNCVSWNPADPEMFAS-ASDDGTIRIWGPSD 514 (519)
T ss_pred c----CC---cceeeEEecCCCCHHHhhc-cCCCCeEEEecCCc
Confidence 3 33 3389999999998877654 45899999998764
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-25 Score=230.29 Aligned_cols=280 Identities=16% Similarity=0.300 Sum_probs=239.6
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC--CCeEEEEEC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD--DYKIKVWNY 80 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~--Dg~I~vWd~ 80 (1208)
+.|..-.++|.++.|+++|.+|+++++|.+++|||..+|+.++++..++-.|..++|......++.++. |.+|+.-++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 345556789999999999999999999999999999999999999988889999999887777777765 889999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
.+.+.++.+.||...|.+++.+|-+..+++++.|++|++||++..++...+..... ..++|.|+|-+++++.....|+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEE
Confidence 99999999999999999999999999999999999999999998888877764433 3478999999999999888999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEE-eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL-EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
+||++...+.... .+.+ .+.....+.+.|+|+|+.++.++..+.+++.|.-++..
T Consensus 166 LyD~Rs~dkgPF~-----------------------tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~- 221 (311)
T KOG1446|consen 166 LYDLRSFDKGPFT-----------------------TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV- 221 (311)
T ss_pred EEEecccCCCCce-----------------------eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-
Confidence 9999875432210 1111 14456788999999999999999999999999999886
Q ss_pred EEEeecCcCCC---eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec-CCCCEEEEEEeCCCCEEEEEE
Q 000961 240 EVDTLRGHMNN---VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 240 ~~~~l~~h~~~---V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~-~~~~i~~la~sp~~~~la~g~ 309 (1208)
..++.++.+. .-+.+|+||++++++|+.||+|.+|++.++..+..+++ +..++.++.|+|.-.++++++
T Consensus 222 -~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 222 -KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred -eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence 5555555433 25779999999999999999999999999999999988 477899999999887777654
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.2e-27 Score=262.54 Aligned_cols=360 Identities=21% Similarity=0.375 Sum_probs=272.7
Q ss_pred EEEEE-cCCCEEEEEECCCeEEEEECCCC------eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC--e
Q 000961 56 GVHFH-KSQPLFVSGGDDYKIKVWNYKMH------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR--T 126 (1208)
Q Consensus 56 ~l~fs-p~~~~Lasgs~Dg~I~vWd~~~~------~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~--~ 126 (1208)
.+..+ |.+++|.|||.||.|++|+...- .++.++..|.+.|..+....+++.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34443 46678999999999999998632 247788899999999999999999999999999999999877 5
Q ss_pred EEEEEecCCCCEEEEEE-eeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe-ccC
Q 000961 127 CISVLTGHNHYVMCASF-HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHD 204 (1208)
Q Consensus 127 ~i~~l~~h~~~V~~l~~-~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 204 (1208)
|..++..|..+|.|++. .++...+++|+.|+.|.+||+.++..... .+.+......+. |+.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~-----------------~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV-----------------ASFNNVTVNSLGSGPK 171 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh-----------------hhccccccccCCCCCc
Confidence 78889999999999999 77888999999999999999987643111 011111111222 888
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 000961 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (1208)
Q Consensus 205 ~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~ 284 (1208)
.+|.+++-++.|..|++|+..+.+++||.++.+. +..+++|+.+|..+..++||+.++++|+||+|++||+...+++.
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k--imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK--IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccc--eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 9999999999999999999999999999999887 88899999999999999999999999999999999999999999
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCC-cceeeEeecCCCCCC
Q 000961 285 TFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ-KDTQVIPIRRPGSTS 363 (1208)
Q Consensus 285 ~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~ 363 (1208)
++..|.+.+|++..+|+-..+.+|+. ++.|..-|+.+. +...+..- .+
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~r--------------------------d~~i~~Tdl~n~~~~tlick~---da-- 298 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGR--------------------------DGNIYRTDLRNPAKSTLICKE---DA-- 298 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCC--------------------------CCcEEecccCCchhheEeecC---CC--
Confidence 99999999999999999888888874 555666666663 22222211 11
Q ss_pred CCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC
Q 000961 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (1208)
Q Consensus 364 ~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~ 443 (1208)
++..+..+...+.+-+ .+.++.|+-|..... ..+++.+++....+ +....+.+..+
T Consensus 299 ---Pv~~l~~~~~~~~~Wv--tTtds~I~rW~~~~~------------------~~l~~s~~~~~~~T-~~~~~~~~~~~ 354 (735)
T KOG0308|consen 299 ---PVLKLHLHEHDNSVWV--TTTDSSIKRWKLEPD------------------IALSVSGDLDFFST-DSNNHSCDLTN 354 (735)
T ss_pred ---chhhhhhccccCCcee--eeccccceecCCccc------------------cccccCCCCCcccc-cCCCccccccC
Confidence 6667777754444422 334567777765432 13333444433222 44444455444
Q ss_pred ceeeeecCCcceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEe
Q 000961 444 EVVKKSILPIAADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQ 489 (1208)
Q Consensus 444 ~~~~~l~~~~~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~ 489 (1208)
..-..+.+...+..-.+-.|.+.+++. .|.+.+||+-.+..+..+.
T Consensus 355 tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 355 TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 344445544467777777888888885 5999999997666555543
No 81
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.3e-25 Score=262.46 Aligned_cols=266 Identities=16% Similarity=0.228 Sum_probs=210.6
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE-------------EEecccccCEEEEEEEc-CCCEEEEEECCC
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-------------DRFDEHDGPVRGVHFHK-SQPLFVSGGDDY 73 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i-------------~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg 73 (1208)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.++|++++|+| ++.+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455667777778766777777777777875444322 13668999999999999 888999999999
Q ss_pred eEEEEECCCC-------eEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee
Q 000961 74 KIKVWNYKMH-------RCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP 145 (1208)
Q Consensus 74 ~I~vWd~~~~-------~~~~~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p 145 (1208)
+|++||+.++ .++..+.+|...|.+++|+|++ ++|++++.|++|+|||+.+++.+..+.+|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999764 3567889999999999999986 6999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCC-eEEEEEcCCCCEEEEEe-
Q 000961 146 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG-VNWAAFHPTLPLIVSGA- 223 (1208)
Q Consensus 146 ~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~g~~L~sgs- 223 (1208)
++++|++++.|++|++||+++.+. ...+.+|.+. +..+.|++++..+++++
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~---------------------------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTI---------------------------VSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcE---------------------------EEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 999999999999999999987442 2245667654 45678899888887764
Q ss_pred ---CCCcEEEEECCCCceeEEEeec-CcCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeEEEeec-CCCCEEEEE
Q 000961 224 ---DDRQVKLWRMNETKAWEVDTLR-GHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVTKRTGVQTFRR-EHDRFWILA 297 (1208)
Q Consensus 224 ---~dg~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~~sp~g~~l~sgs-~dg~I~vwd~~~~~~~~~~~~-~~~~i~~la 297 (1208)
.|+.|++||+++.... ..... .+...+....|+++++++++++ .|+.|++||+.+++.+..... ....+..++
T Consensus 232 s~s~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~ 310 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLC 310 (493)
T ss_pred CCCCCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceE
Confidence 4789999999875431 33332 2334566678999999999887 599999999998887765543 334566677
Q ss_pred EeCC
Q 000961 298 SHPE 301 (1208)
Q Consensus 298 ~sp~ 301 (1208)
+.|.
T Consensus 311 ~~pk 314 (493)
T PTZ00421 311 MMPK 314 (493)
T ss_pred eccc
Confidence 7764
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2.5e-27 Score=235.56 Aligned_cols=247 Identities=25% Similarity=0.431 Sum_probs=219.9
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
+-+|+||.+.|.+.+++.+-.+-|++..|=+-+|||.-+|..+++| .|..-|.+++|+.|.++|++|+.+..++|+|++
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 4579999999999999999999999999999999999999999999 599999999999999999999999999999998
Q ss_pred CC-eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 82 MH-RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 82 ~~-~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
.. .+...+.+|++.|+.+.|....+.|+++++|++||+||.++++.++++. .+++|+++..+++|++|.++. .+.|.
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~ 208 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVK 208 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeE
Confidence 64 4567789999999999999999999999999999999999999999997 467899999999998666654 78899
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~ 240 (1208)
+||..+...... ..-...|.+.+++|+...+++|+.|..++.||..++..
T Consensus 209 Fwdaksf~~lKs----------------------------~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE-- 258 (334)
T KOG0278|consen 209 FWDAKSFGLLKS----------------------------YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-- 258 (334)
T ss_pred Eeccccccceee----------------------------ccCccccccccccCCCceEEecCcceEEEEEeccCCce--
Confidence 999987554321 12345688999999999999999999999999999986
Q ss_pred EEe-ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 241 VDT-LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 241 ~~~-l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
+.. ..+|.++|.|+.|+|+|...++||+||+|++|.+..++
T Consensus 259 i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 259 IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 445 48999999999999999999999999999999876554
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1e-25 Score=266.61 Aligned_cols=280 Identities=27% Similarity=0.484 Sum_probs=246.4
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEE-ecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR-FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~-l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1208)
|...+.+..|+ ..++++++.+++|++||..++..+.. +.+|.+.|.+++|..-+.+|++|+.|.+++|||..+|.|.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 67788899998 55789999999999999999999888 9999999999999888889999999999999999999999
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCC
Q 000961 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA 166 (1208)
Q Consensus 87 ~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~ 166 (1208)
.++.+|.+.|+++...+. .+++|+.|.+|++|+++++.++..+.+|..+|.++..+ ++++++|+.|++|++||+.+
T Consensus 285 ~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred EEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 999999999999987654 68889999999999999999999999999999999998 78999999999999999986
Q ss_pred CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeec
Q 000961 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAWEVDTLR 245 (1208)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~-~~~~~~~l~ 245 (1208)
++ +...+.+|...|.++.+.+. +.+++|+.|+.|++||+.+. ++ +.++.
T Consensus 361 ~~---------------------------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c--~~tl~ 410 (537)
T KOG0274|consen 361 GK---------------------------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC--IHTLQ 410 (537)
T ss_pred ce---------------------------eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh--hhhhc
Confidence 54 34478899999999988776 79999999999999999999 76 88999
Q ss_pred CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec-CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcce
Q 000961 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPA 324 (1208)
Q Consensus 246 ~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~-~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~ 324 (1208)
+|..-+..+.+ .+++|++++.|++|++||..++++++++.. +...++.+++. ...+++++
T Consensus 411 ~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~--------------- 471 (537)
T KOG0274|consen 411 GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS--------------- 471 (537)
T ss_pred CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe---------------
Confidence 99999877665 478899999999999999999999999988 55777777665 22233333
Q ss_pred EEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 325 FAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 325 ~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
.++.+++||+.+++....
T Consensus 472 -----------~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 472 -----------DDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred -----------cCCeeEEEecccCchhhh
Confidence 578888999988776543
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.6e-26 Score=268.93 Aligned_cols=291 Identities=21% Similarity=0.300 Sum_probs=235.2
Q ss_pred CCCCEEEEEEeCCCCEEEEEe--cCCeEEEEECCC------------CeEEEEecccccCEEEEEEEcCCCEEEEEECCC
Q 000961 8 KSNRVKGLSFHSKRPWILASL--HSGVIQLWDYRM------------GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY 73 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~--~dg~I~iWd~~~------------g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg 73 (1208)
+...|.++..||||..+|+|+ .||.++||+... .+.+.+...|.+.|+|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 455689999999999999999 899999998531 234566678999999999999999999999999
Q ss_pred eEEEEECCC------------------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC
Q 000961 74 KIKVWNYKM------------------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN 135 (1208)
Q Consensus 74 ~I~vWd~~~------------------~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~ 135 (1208)
.|.||.... .++...+.+|...|..++|+|++.++++++.|++|.|||..+.+.+.++.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 24777889999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 136 HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 136 ~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
+.|..+.|.|-|++|++-+.|++|+||++.+....+.... .| .-..-...+..+.|+||
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~------------pf---------~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK------------PF---------EESPLTTFFLRLSWSPD 230 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeecc------------ch---------hhCCCcceeeecccCCC
Confidence 9999999999999999999999999999765322211000 00 00112234678999999
Q ss_pred CCEEEEEeC----CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC-----CC------------EEEEEeCCCcEEE
Q 000961 216 LPLIVSGAD----DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-----QD------------IIVSNSEDKSIRV 274 (1208)
Q Consensus 216 g~~L~sgs~----dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~-----g~------------~l~sgs~dg~I~v 274 (1208)
|.+|++... -.++.|.+-.+.+. -..+.||..++.++.|+|. .+ .+|+|+.|++|.|
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~--~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKV--DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCcee--eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 999998753 34577777766554 6778999999999999981 11 6789999999999
Q ss_pred EeCCCCeeEEEee-cCCCCEEEEEEeCCCCEEEEEE-CCCeeeEeeCCC
Q 000961 275 WDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGH-DSGMIVFKLERE 321 (1208)
Q Consensus 275 wd~~~~~~~~~~~-~~~~~i~~la~sp~~~~la~g~-~~gi~v~~l~~~ 321 (1208)
|.....+++.... ..+..|..++|+|||..|.+++ |+.+.++.++..
T Consensus 309 W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9988777766543 3456799999999998766655 555666666543
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=237.87 Aligned_cols=284 Identities=23% Similarity=0.352 Sum_probs=236.5
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE--------ccCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL--------LGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l--------~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iw 120 (1208)
+..+-+-|..|||||++|++|+.||.|.|||+.+|+....+ .-+.++|.|+.||.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34566889999999999999999999999999998765433 3478899999999999999999999999999
Q ss_pred ECCCCeEEEEEe-cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEE
Q 000961 121 NWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1208)
Q Consensus 121 d~~s~~~i~~l~-~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1208)
.+.+|.|++.+. .|+..|+|+.|+.|+..+++++.|.++|+.-+.+++... .
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---------------------------E 343 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---------------------------E 343 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---------------------------H
Confidence 999999999996 899999999999999999999999999999998876543 5
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 000961 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 200 ~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp-~g~~l~sgs~dg~I~vwd~~ 278 (1208)
+.||.+-|+.+.|.++|..+++++.||+|++|+..+..+.......+...+|.++..-| +...++++...++|.+.++.
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 77999999999999999999999999999999999998844444445666788888877 45688899899999999975
Q ss_pred CCeeEEEee---cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEe
Q 000961 279 KRTGVQTFR---REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (1208)
Q Consensus 279 ~~~~~~~~~---~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~ 355 (1208)
|+.+..+. ...+.+.+.+.+|.|.++.+.. .|+.++.+...+|+....++
T Consensus 424 -GQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--------------------------ED~vlYCF~~~sG~LE~tl~ 476 (508)
T KOG0275|consen 424 -GQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--------------------------EDGVLYCFSVLSGKLERTLP 476 (508)
T ss_pred -ceEEeeeccCCccCCceEEEEecCCCcEEEEEc--------------------------cCcEEEEEEeecCceeeeee
Confidence 77777765 3445677778888887776655 46677788888888766666
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
+.. . .+-.++.+|..+.+ ++-++||.+++|.
T Consensus 477 VhE----k---dvIGl~HHPHqNll--AsYsEDgllKLWk 507 (508)
T KOG0275|consen 477 VHE----K---DVIGLTHHPHQNLL--ASYSEDGLLKLWK 507 (508)
T ss_pred ccc----c---cccccccCcccchh--hhhcccchhhhcC
Confidence 543 2 67778889987744 3445788998884
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=8.6e-27 Score=247.68 Aligned_cols=277 Identities=19% Similarity=0.299 Sum_probs=238.2
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
..+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+..++|+.+.|.+++..+++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3578899999999999998999999999999999987665 67888899999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
.+.+...++.||.+.|+++.|......+++|+.|.+|+.||++...|..++.. .+.+..+..+ ...+++|..|++||
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceE
Confidence 99999999999999999999999888899999999999999999888877652 3445556555 45789999999999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~ 240 (1208)
+||+++..... ....+ +.|+++..+++|..+.+++.|.++.+.|+++.....
T Consensus 326 fwD~Rs~~~~~---------------------------sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~ 377 (459)
T KOG0288|consen 326 FWDIRSADKTR---------------------------SVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ 377 (459)
T ss_pred EEeccCCceee---------------------------EeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEE
Confidence 99998755432 33333 489999999999999999999999999999988632
Q ss_pred EEeecC--cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCC--EEEEEEeCCCCEEEEEEC
Q 000961 241 VDTLRG--HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR--FWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 241 ~~~l~~--h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~--i~~la~sp~~~~la~g~~ 310 (1208)
...-.+ .....+.+.|||++.|+++||.||.|+||++.++++...+...... |++++|+|.|..+++++.
T Consensus 378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 222222 2345889999999999999999999999999999998888766655 999999999998877764
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.5e-26 Score=263.48 Aligned_cols=254 Identities=17% Similarity=0.367 Sum_probs=207.6
Q ss_pred ceEee-cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC--------------------------------C-------
Q 000961 2 LTKFE-TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--------------------------------G------- 41 (1208)
Q Consensus 2 l~~l~-~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~--------------------------------g------- 41 (1208)
.+.+. .|.+.|.++.||+||+|||+||.||.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 45677 9999999999999999999999999999998754 0
Q ss_pred ---------------------eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEE
Q 000961 42 ---------------------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1208)
Q Consensus 42 ---------------------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~ 100 (1208)
++++.|.+|.+.|..+.||.++ +|++++-|.+|++|++....|+..|. |.+.|+||+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 1334567899999999999875 89999999999999999999999997 999999999
Q ss_pred EcC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcce
Q 000961 101 FHH-EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (1208)
Q Consensus 101 fs~-d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~ 179 (1208)
|+| |.+++++|+-||.||||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|+..+++......
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~----- 490 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH----- 490 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee-----
Confidence 999 56799999999999999998766654443 44789999999999999999999999999998876543211
Q ss_pred eeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeecCcCC--CeEEEEE
Q 000961 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMN--NVSCVMF 256 (1208)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~--~V~~l~~ 256 (1208)
+...+. .-..| +.|+.+.|.|... .+++.+.|..|+|||.++... +..+.|+.+ .-....|
T Consensus 491 -I~~~~~------------Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l--v~KfKG~~n~~SQ~~Asf 554 (712)
T KOG0283|consen 491 -IRLHNK------------KKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL--VHKFKGFRNTSSQISASF 554 (712)
T ss_pred -EeeccC------------ccccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhh--hhhhcccccCCcceeeeE
Confidence 000000 01112 2799999998544 588888999999999988776 666666543 3346689
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCC
Q 000961 257 HAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 257 sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
+.||++|+++++|..|++|+...
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCC
Confidence 99999999999999999999754
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6e-26 Score=232.24 Aligned_cols=290 Identities=23% Similarity=0.418 Sum_probs=245.8
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
+++.|.||.+.|..++-....+.+.+++.|.+-+||.+++|.++.++.+|.+.|+++.|++.+.++++++.|++-.||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred ------CC----------------------------------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000961 81 ------KM----------------------------------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 81 ------~~----------------------------------~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iw 120 (1208)
.. .-++..+.+|...|.+..|...++.+++++.|.+-.+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 00 01455778999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 121 d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
|++++..+..+.||.+..+.++-+|..+++++++.|.+.++||++..-. ...++
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~--------------------------sV~VF 353 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ--------------------------SVAVF 353 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc--------------------------eeeee
Confidence 9999999999999999999999999999999999999999999974111 13378
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
.||...|+++.|.-+. .+++|++|.+|++||+++... ++.+++ ...++..++.+..+..|+.--.+..|++||+...
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs-plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS-PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred cccccceeEEEEecCC-ceeecCCCceEEEeeeccccC-cceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 9999999999999875 699999999999999988764 244444 4567889999988888998888899999999754
Q ss_pred eeEE----EeecCCCCEEEEEEeCC---CCEEEEEECCCeeeEeeC
Q 000961 281 TGVQ----TFRREHDRFWILASHPE---MNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 281 ~~~~----~~~~~~~~i~~la~sp~---~~~la~g~~~gi~v~~l~ 319 (1208)
+... .-++|..-+.+.+|..+ .+++.+|.|..+.-|++.
T Consensus 431 RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 431 RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 3322 12355566889998754 456777776666666554
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=241.09 Aligned_cols=278 Identities=19% Similarity=0.330 Sum_probs=239.5
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE----EE------------e--cccccCEEEEEEEcCCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI----DR------------F--DEHDGPVRGVHFHKSQP 64 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i----~~------------l--~~h~~~V~~l~fsp~~~ 64 (1208)
+.+..|.-+|.|++++|+..++++++.+|+|.-|++.+|+.. .+ . +.|...|.+++.|+||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 457789999999999999999999999999999999888633 11 0 26888899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEe
Q 000961 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144 (1208)
Q Consensus 65 ~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~ 144 (1208)
+|++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....+++++.|++|++|+++....+.++.+|.+.|..+.-.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred eCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 145 p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
..++.+-+|+.|+++++|++... ...++.+|.+.+-|++|-.+ ..+++|++
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~ee----------------------------sqlifrg~~~sidcv~~In~-~HfvsGSd 346 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEE----------------------------SQLIFRGGEGSIDCVAFIND-EHFVSGSD 346 (479)
T ss_pred cccceEEeccccceeEEEecccc----------------------------ceeeeeCCCCCeeeEEEecc-cceeeccC
Confidence 88887888889999999999442 23467788999999999876 57999999
Q ss_pred CCcEEEEECCCCceeEEEeec----------CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEEeecCC
Q 000961 225 DRQVKLWRMNETKAWEVDTLR----------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREH 290 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~l~----------~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~----~~~~~~~~~~ 290 (1208)
+|.|.+|++...++..+.... .+...|++++..|..+++++|+.+|.|++|-+..+ .++..+. -.
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~ 425 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LV 425 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cc
Confidence 999999999988873322221 12237999999999999999999999999998877 3334443 56
Q ss_pred CCEEEEEEeCCCCEEEEEEC
Q 000961 291 DRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 291 ~~i~~la~sp~~~~la~g~~ 310 (1208)
+-|++++|+++|+.+++|..
T Consensus 426 GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cEEEEEEEccCCCEEEEecc
Confidence 77999999999998887754
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=241.82 Aligned_cols=285 Identities=15% Similarity=0.267 Sum_probs=228.2
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe----EEEEec-ccccCEEEEEEEcCCCEEEEEECCCeEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT----LIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKV 77 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~----~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~v 77 (1208)
.+|.+|+..|.++++.|.|-++++|+.|.+|++||+.... ..+.+. ....+|+++.|++.|..|++.+.....+|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 3688999999999999999999999999999999986331 112222 34557999999999999888888889999
Q ss_pred EECCCCeEEE------------EEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCe-EEEEEe-----cCCCCE
Q 000961 78 WNYKMHRCLF------------TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT-CISVLT-----GHNHYV 138 (1208)
Q Consensus 78 Wd~~~~~~~~------------~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~-~i~~l~-----~h~~~V 138 (1208)
+|-.....+. .-+||...++|.+|+|+.+ .+++++.||++||||+...+ ...+++ +..-++
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 9965433332 2258999999999999865 78999999999999997533 333332 334578
Q ss_pred EEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC--CeEEEEEcCCC
Q 000961 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR--GVNWAAFHPTL 216 (1208)
Q Consensus 139 ~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~g 216 (1208)
++++|+|++++|++|+.||.|.+|+..+..... ...+-..|.. .|+|+.||++|
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p------------------------~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP------------------------VMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCccccc------------------------ceEeeeccCCCCceeEEEecccc
Confidence 999999999999999999999999986533221 2345667877 89999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeecC--cCCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCCeeEEEeec
Q 000961 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRG--HMNNVSCVMFHAKQDIIVSNSE------DKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 217 ~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~--h~~~V~~l~~sp~g~~l~sgs~------dg~I~vwd~~~~~~~~~~~~ 288 (1208)
++|++-+.|+++++||++..+.. +....+ ...+-+.++|||+.++|++|+. .|++.+||..+...++.+..
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKP-LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred chhhhccCCCceeeeeccccccc-hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 99999999999999999986641 333332 2345678899999999999864 56899999999999999988
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCC
Q 000961 289 EHDRFWILASHPEMNLLAAGHDSG 312 (1208)
Q Consensus 289 ~~~~i~~la~sp~~~~la~g~~~g 312 (1208)
....|..+.|||.-+.+.+|+.+|
T Consensus 456 ~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 456 STASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred CCceEEEEeecchhhheeeecCCC
Confidence 888899999999988888887544
No 91
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=2.2e-25 Score=234.71 Aligned_cols=249 Identities=28% Similarity=0.465 Sum_probs=216.7
Q ss_pred ceEeecCCCCEEEEEEeCCCC---EEEEEecCCeEEEEECCCCeEE----EEecccccCEEEEEEEcCCCEEEEEECCCe
Q 000961 2 LTKFETKSNRVKGLSFHSKRP---WILASLHSGVIQLWDYRMGTLI----DRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~---~Lasg~~dg~I~iWd~~~g~~i----~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~ 74 (1208)
..++.||+++|.+++|....+ .+++++.|.++++|-++.+... +...+|...|-+++..++|.++++|+.|.+
T Consensus 137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTM 216 (423)
T ss_pred EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccce
Confidence 357899999999999876444 4999999999999998877543 344599999999999999999999999999
Q ss_pred EEEEECC-------------------------CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 000961 75 IKVWNYK-------------------------MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1208)
Q Consensus 75 I~vWd~~-------------------------~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1208)
|++|+.. ++.++.++.||..+|.++.|++ ...++++|.|.+|+.||+.++.++.
T Consensus 217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~ 295 (423)
T KOG0313|consen 217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS 295 (423)
T ss_pred eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee
Confidence 9999932 1235668899999999999998 6689999999999999999999999
Q ss_pred EEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEE
Q 000961 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1208)
Q Consensus 130 ~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 209 (1208)
.+.+ +..+.|+..+|..++|++|+.|..+++||.+++. ...+...+.+|...|.+
T Consensus 296 ~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~------------------------gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 296 TLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD------------------------GSVVSQSLIGHKNWVSS 350 (423)
T ss_pred eeec-CcceeEeecccccceeeecCCCCceeecCCCCCC------------------------CceeEEeeecchhhhhh
Confidence 8885 5679999999999999999999999999998743 33467789999999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 210 AAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 210 l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
+.|+|... .|++|+.|+++++||+++.+. ++..+.+|...|.++.|+ ++..|++|+.|++|+++.-.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~-plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCC-cceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999654 688999999999999999873 388999999999999998 56789999999999998643
No 92
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=259.44 Aligned_cols=238 Identities=21% Similarity=0.403 Sum_probs=195.4
Q ss_pred EEEEec-ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC--------------------------------C------
Q 000961 43 LIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM--------------------------------H------ 83 (1208)
Q Consensus 43 ~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~--------------------------------~------ 83 (1208)
..+.+. .|++.|.++.||+||+|||+||.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 8999999999999999999999999999998644 0
Q ss_pred ----------------------eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEE
Q 000961 84 ----------------------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA 141 (1208)
Q Consensus 84 ----------------------~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l 141 (1208)
+++..+.||.+.|..+.||.++ +|+++|.|.|||+|++...+|+.++. |+..|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 1223456899999999999876 89999999999999999999999998 99999999
Q ss_pred EEee-CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEE
Q 000961 142 SFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (1208)
Q Consensus 142 ~~~p-~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~ 220 (1208)
+|+| |++++++|+.||.||+|++...+.. ....-..-|++++|.|+|+..+
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv----------------------------~W~Dl~~lITAvcy~PdGk~av 467 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVV----------------------------DWNDLRDLITAVCYSPDGKGAV 467 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeE----------------------------eehhhhhhheeEEeccCCceEE
Confidence 9999 5589999999999999999774432 1222336799999999999999
Q ss_pred EEeCCCcEEEEECCCCceeEEEeecCc------CCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeeEEEeecCCC--
Q 000961 221 SGADDRQVKLWRMNETKAWEVDTLRGH------MNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-- 291 (1208)
Q Consensus 221 sgs~dg~I~iwd~~~~~~~~~~~l~~h------~~~V~~l~~sp~g-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-- 291 (1208)
+|+.+|.+++|+....+...-..+..| ...|+.+.|.|.. ..+++.+.|..|||+|.++..++..|++...
T Consensus 468 IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 468 IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred EEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 999999999999998876332222222 2279999999843 4588889999999999988888888886543
Q ss_pred CEEEEEEeCCCCEEEEEEC
Q 000961 292 RFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 292 ~i~~la~sp~~~~la~g~~ 310 (1208)
.-....|+.||++|+++++
T Consensus 548 SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASE 566 (712)
T ss_pred cceeeeEccCCCEEEEeec
Confidence 2356678889999988874
No 93
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=4.8e-24 Score=253.14 Aligned_cols=247 Identities=15% Similarity=0.222 Sum_probs=195.3
Q ss_pred EecCCeEEEEECCCCeEEEEecccccCEEEEEEEcC-CCEEEEEECCCeEEEEECCCCe--------EEEEEccCCCCEE
Q 000961 27 SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMHR--------CLFTLLGHLDYIR 97 (1208)
Q Consensus 27 g~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~~~--------~~~~l~~h~~~I~ 97 (1208)
|+.++.|++|+......+..+.+|.++|.+++|+|+ +.+|++|+.||+|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 456788999998777888899999999999999997 7899999999999999997542 3456789999999
Q ss_pred EEEEcCCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCC
Q 000961 98 TVQFHHEYPW-IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (1208)
Q Consensus 98 ~v~fs~d~~~-l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~ 176 (1208)
+++|+|++.. +++++.|++|+|||+.+++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++.+..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i------ 202 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA------ 202 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE------
Confidence 9999999875 4789999999999999998877776 6678999999999999999999999999999875432
Q ss_pred cceeeccccccccccccceEEEEEeccCCCeEE-----EEEcCCCCEEEEEeCCC----cEEEEECCC-CceeEEEeecC
Q 000961 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW-----AAFHPTLPLIVSGADDR----QVKLWRMNE-TKAWEVDTLRG 246 (1208)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-----l~~sp~g~~L~sgs~dg----~I~iwd~~~-~~~~~~~~l~~ 246 (1208)
..+.+|.+.+.. ..|++++.+|++++.|+ .|++||++. .+......+..
T Consensus 203 ---------------------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~ 261 (568)
T PTZ00420 203 ---------------------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN 261 (568)
T ss_pred ---------------------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC
Confidence 255677765433 34568889999988764 799999985 44422333444
Q ss_pred cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee--cCCCCEEEEEEeCCC
Q 000961 247 HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR--REHDRFWILASHPEM 302 (1208)
Q Consensus 247 h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~--~~~~~i~~la~sp~~ 302 (1208)
+.+.+......++|.++++|+.|++|++|++..+.. ..+. .+..++.+++|.|..
T Consensus 262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 445555555566789999999999999999987643 2222 144567778888864
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.1e-26 Score=252.85 Aligned_cols=263 Identities=20% Similarity=0.379 Sum_probs=223.7
Q ss_pred CCCCEE---EEEEeC-CCCEEEEEecCCeEEEEECCCCe------EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEE
Q 000961 8 KSNRVK---GLSFHS-KRPWILASLHSGVIQLWDYRMGT------LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKV 77 (1208)
Q Consensus 8 h~~~V~---~lafsp-dg~~Lasg~~dg~I~iWd~~~g~------~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~v 77 (1208)
|...|. .+..++ .+++|.+||.||.|++|++.... .+.+++.|...|+.+....+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 344444 455554 56789999999999999975432 36678899999999999999999999999999999
Q ss_pred EECCCC--eEEEEEccCCCCEEEEEE-cCCCCEEEEEECCCcEEEEECCCCeE--E--------EEEe-cCCCCEEEEEE
Q 000961 78 WNYKMH--RCLFTLLGHLDYIRTVQF-HHEYPWIVSASDDQTIRIWNWQSRTC--I--------SVLT-GHNHYVMCASF 143 (1208)
Q Consensus 78 Wd~~~~--~~~~~l~~h~~~I~~v~f-s~d~~~l~s~s~Dg~I~iwd~~s~~~--i--------~~l~-~h~~~V~~l~~ 143 (1208)
|+...+ -|..++..|.++|.|+++ -++...+++|+.|+.|.+||+.++.. + ..+. |+...|.+++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 999877 688889999999999999 88888999999999999999997722 2 2223 78889999999
Q ss_pred eeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe
Q 000961 144 HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1208)
Q Consensus 144 ~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs 223 (1208)
++.|..|++|+..+.+++||.++.++. ..+.||...|..+..++||..+++++
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~ki---------------------------mkLrGHTdNVr~ll~~dDGt~~ls~s 232 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKI---------------------------MKLRGHTDNVRVLLVNDDGTRLLSAS 232 (735)
T ss_pred CCcceEEEecCcccceEEeccccccce---------------------------eeeeccccceEEEEEcCCCCeEeecC
Confidence 999999999999999999999886643 25679999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEe
Q 000961 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASH 299 (1208)
Q Consensus 224 ~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~s 299 (1208)
.||+|++||+...++ +.++..|...|+++..+|+-..+.+|+.||.|..=|+++......+-....++..+..+
T Consensus 233 SDgtIrlWdLgqQrC--l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~ 306 (735)
T KOG0308|consen 233 SDGTIRLWDLGQQRC--LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLH 306 (735)
T ss_pred CCceEEeeeccccce--eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhc
Confidence 999999999999888 88899999999999999999999999999999999998854444444445555555555
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=4.3e-25 Score=248.63 Aligned_cols=278 Identities=22% Similarity=0.423 Sum_probs=240.9
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE--EEecccccCEEE-EEEEc-CCCEEEEEECCCeEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI--DRFDEHDGPVRG-VHFHK-SQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i--~~l~~h~~~V~~-l~fsp-~~~~Lasgs~Dg~I~vW 78 (1208)
+.++||+.-|+.+++.+.. ++++++.||++++|+-..++.+ +.+.+|.+-|.+ +++-+ ++-++++|+.|.+|.+|
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 5789999999999987654 7899999999999996555443 456788888887 88875 44579999999999999
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
...+..++.++.+|...|.++....++. ++|||.|.++++|.. +++...+.+|+..|+++.+.|++ .++|||.|.+
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt 162 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKT 162 (745)
T ss_pred ecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcce
Confidence 9999999999999999999999888886 999999999999975 66777799999999999999987 8999999999
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|++|.-.+ ...++.+|...|..+++-+++ .+++++.||.|++|++....
T Consensus 163 IklWk~~~-----------------------------~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~- 211 (745)
T KOG0301|consen 163 IKLWKGGT-----------------------------LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEV- 211 (745)
T ss_pred eeeccCCc-----------------------------hhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCce-
Confidence 99998643 233788999999999999985 58999999999999995444
Q ss_pred eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 239 ~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l 318 (1208)
+....+|++-|.++...+++..++++++|+++++|+.. .+.+.+..+...+|++.+-++|.+++.|+|+.++||..
T Consensus 212 --l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 212 --LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTV 287 (745)
T ss_pred --eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEe
Confidence 78899999999999988889999999999999999865 88889988888999999999999888887666655554
Q ss_pred CC
Q 000961 319 ER 320 (1208)
Q Consensus 319 ~~ 320 (1208)
..
T Consensus 288 ~k 289 (745)
T KOG0301|consen 288 DK 289 (745)
T ss_pred cc
Confidence 43
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=7.9e-25 Score=233.84 Aligned_cols=275 Identities=18% Similarity=0.269 Sum_probs=239.8
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
..++++...|..+.+++|+.|..+.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|+||......+....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888889999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCC
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH--NHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL 167 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h--~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~ 167 (1208)
..|..+|+.+..+|.|.||++++.||+..+.|++++.++...... .-.+++++|||||..+.+|+.||.|++||+...
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 999999999999999999999999999999999999988877642 345899999999999999999999999999875
Q ss_pred ccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCc
Q 000961 168 RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH 247 (1208)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h 247 (1208)
.... .+.+|.++|..++|+.+|-+|+++++|+.|++||++..+......+..
T Consensus 380 ~~~a---------------------------~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~- 431 (506)
T KOG0289|consen 380 TNVA---------------------------KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE- 431 (506)
T ss_pred cccc---------------------------cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-
Confidence 4322 567899999999999999999999999999999999887643333333
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--CCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCC
Q 000961 248 MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT--KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (1208)
Q Consensus 248 ~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~--~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~g 312 (1208)
...+.++.|.+.|.+|+.++.|=.|++++-. +.+.+..+..+.+..+.+.|....+++++++.+.
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence 2379999999999999999887666666532 4566677777777888999999999999887543
No 97
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.9e-24 Score=255.95 Aligned_cols=229 Identities=14% Similarity=0.272 Sum_probs=191.2
Q ss_pred EeecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCC-------eEEEEecccccCEEEEEEEcCC-CEEEEEECCCe
Q 000961 4 KFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYK 74 (1208)
Q Consensus 4 ~l~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g-------~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~ 74 (1208)
.+.+|++.|.+++|+| ++.+|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999765 3467788999999999999986 69999999999
Q ss_pred EEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-EEEEEEeeCCCEEEEE
Q 000961 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHY-VMCASFHPKEDLVVSA 153 (1208)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~-V~~l~~~p~~~~l~s~ 153 (1208)
|+|||+.+++.+..+.+|.+.|.+++|+|++.+|++++.|++|++||+++++.+..+.+|.+. +..+.|.+++..++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988765 4567899988888776
Q ss_pred E----CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe-ccCCCeEEEEEcCCCCEEEEEe-CCCc
Q 000961 154 S----LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHPTLPLIVSGA-DDRQ 227 (1208)
Q Consensus 154 s----~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~L~sgs-~dg~ 227 (1208)
+ .|+.|++||++...... .... .+...+....|++++++|++++ .|+.
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~--------------------------~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~ 283 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPY--------------------------STVDLDQSSALFIPFFDEDTNLLYIGSKGEGN 283 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCce--------------------------eEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence 4 47899999997643211 0111 2334566678999999999887 5999
Q ss_pred EEEEECCCCceeEEEee-cCcCCCeEEEEEccCC
Q 000961 228 VKLWRMNETKAWEVDTL-RGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~l-~~h~~~V~~l~~sp~g 260 (1208)
|++||+.+++. +... ..+..++..++|.|..
T Consensus 284 Iriwdl~~~~~--~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 284 IRCFELMNERL--TFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEEEeeCCce--EEEeeccCCCCCcceEecccc
Confidence 99999998875 3222 2245567788888753
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.2e-25 Score=249.00 Aligned_cols=261 Identities=20% Similarity=0.348 Sum_probs=227.5
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEcc-CC
Q 000961 15 LSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG-HL 93 (1208)
Q Consensus 15 lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~-h~ 93 (1208)
+.|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+.++.+ |.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 5677 455778775 55799999999987776666689999999999999999999999999999999999999998 99
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccc
Q 000961 94 DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172 (1208)
Q Consensus 94 ~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~-l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~ 172 (1208)
..|.+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++.++++|+.|+.+.|||.....
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~---- 334 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE---- 334 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc----
Confidence 999999999 55799999999999999998766555 88999999999999999999999999999999984433
Q ss_pred cCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEe--CCCcEEEEECCCCceeEEEeecCcCC
Q 000961 173 SPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGA--DDRQVKLWRMNETKAWEVDTLRGHMN 249 (1208)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs--~dg~I~iwd~~~~~~~~~~~l~~h~~ 249 (1208)
.++.+..|...|..++|+| ...+||+|+ .|+.|++||..++.. +.. .....
T Consensus 335 -----------------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~--i~~-vdtgs 388 (484)
T KOG0305|consen 335 -----------------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR--IDS-VDTGS 388 (484)
T ss_pred -----------------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--ecc-cccCC
Confidence 3457889999999999999 456788875 699999999999885 333 34567
Q ss_pred CeEEEEEccCCCEEEEE--eCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 250 NVSCVMFHAKQDIIVSN--SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 250 ~V~~l~~sp~g~~l~sg--s~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
.|.++.|++..+-|+++ ..++.|.||+..+.+.+..+.+|..+|..++++|||..+++|.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec
Confidence 89999999988767664 4567899999999999999999999999999999999999887
No 99
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=6.5e-25 Score=259.79 Aligned_cols=248 Identities=30% Similarity=0.532 Sum_probs=221.8
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
...|.||.+.|.+++|..-+.+|++|+.|.+++|||+.+|.+.+.+.+|.+.|+++... ..++++|+.|.+|+||+++
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 34599999999999999888899999999999999999999999999999999998874 4478889999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
++.++.++.+|.++|+++..+ ++.+++|+.|++|++||+.+++++.++++|.+.|.++.+.+. ..+++|+.|++|++
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKV 396 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEe
Confidence 999999999999999999998 779999999999999999999999999999999999988755 89999999999999
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~ 241 (1208)
||+.+.+. +...+.+|..-+..+.+ .++.|++++.|++|++||..+++. +
T Consensus 397 Wdl~~~~~--------------------------c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~--~ 446 (537)
T KOG0274|consen 397 WDLRTKRK--------------------------CIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGEC--L 446 (537)
T ss_pred ecCCchhh--------------------------hhhhhcCCccccccccc--ccceeEeccccccEEEeecccCce--e
Confidence 99998620 23367778887765555 457899999999999999999998 7
Q ss_pred EeecC-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 000961 242 DTLRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 242 ~~l~~-h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~ 286 (1208)
..+.+ |...|+++.+. ...+++++.||++.+||+++++....+
T Consensus 447 ~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 RTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 77777 67889888876 567999999999999999999888765
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=224.41 Aligned_cols=244 Identities=19% Similarity=0.338 Sum_probs=208.8
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC--EEEEEECCCeEEEEE
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDYKIKVWN 79 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~--~Lasgs~Dg~I~vWd 79 (1208)
+-.|+.|.+.|++++.+ ++|+|+|+.|-+|+|||+++...+..+-.|.+.|+++.|.+... .|++|++||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 34688999999999997 99999999999999999999999999999999999999998775 899999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 80 YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 80 ~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
.....++.++++|.+.|+.++.||.++.-++.+.|+.++.||+-.|+.-..+.- ...-+.+.|+|.|.+++.++.+ .|
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i 191 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KI 191 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EE
Confidence 999999999999999999999999999999999999999999998887666552 2334559999999988888754 58
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
-+|.+.+...... ......+.++.|.. +..|++|++|+.|.+||.++..+
T Consensus 192 ~i~q~d~A~v~~~----------------------------i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~- 241 (362)
T KOG0294|consen 192 DIYQLDNASVFRE----------------------------IENPKRILCATFLD-GSELLVGGDNEWISLKDTDSDTP- 241 (362)
T ss_pred EEEecccHhHhhh----------------------------hhccccceeeeecC-CceEEEecCCceEEEeccCCCcc-
Confidence 8998876432211 01124456666654 56899999999999999998776
Q ss_pred EEEeecCcCCCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 240 EVDTLRGHMNNVSCVMF--HAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 240 ~~~~l~~h~~~V~~l~~--sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
...+.+|.+.|-++.+ .|++.+|+++|+||.|+|||++..
T Consensus 242 -~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 -LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 7888999999999884 467889999999999999998755
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7.4e-25 Score=224.47 Aligned_cols=273 Identities=18% Similarity=0.303 Sum_probs=224.6
Q ss_pred CCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCC-CeEEE-EecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe
Q 000961 8 KSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRM-GTLID-RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1208)
Q Consensus 8 h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~-g~~i~-~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1208)
..+.|.+++||| ....+++|+-||+|++|+++. |..+. ....|.+||.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 457899999999 556666888999999999976 44443 345799999999999999999999999999999999984
Q ss_pred EEEEEccCCCCEEEEEEcCCCC--EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYP--WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~--~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
+..+..|.++|.++.|-+... .|++||.|.+|+.||.++..++.++. ....+.++..- ...++++..++.|.+|
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEE
Confidence 556777999999999988765 89999999999999999999988887 34567666553 4688999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~ 242 (1208)
++++...... .....-.-.+.|++..++....+.|+-+|.+.+..++.+....-.
T Consensus 182 nL~n~~te~k-------------------------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 182 NLENPPTEFK-------------------------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred EcCCCcchhh-------------------------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 9976432210 011112345788999999888999999999999999886332244
Q ss_pred eecCcCC---------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 243 TLRGHMN---------NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 243 ~l~~h~~---------~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
+++.|.. .|.+++|||....|++.+.||++.+||-..+..+.+...+..+|++.+|+.+|.++|.+.
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 5555542 477899999999999999999999999999999999999999999999999999988654
No 102
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-23 Score=218.58 Aligned_cols=292 Identities=18% Similarity=0.288 Sum_probs=239.2
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC--CCcEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD--DQTIRI 119 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~--Dg~I~i 119 (1208)
+..+.|....+.|.++.|+++|.++++++.|.++++||..+++++.++..+...+..++|......++.++. |.+||.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 444566667889999999999999999999999999999999999999988889999999888888887777 889999
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEE
Q 000961 120 WNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1208)
Q Consensus 120 wd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1208)
-++.+.+.++.+.||...|.++..+|-++.+++++.|++|++||++..+... .
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg---------------------------~ 137 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG---------------------------L 137 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce---------------------------E
Confidence 9999999999999999999999999999999999999999999998644321 1
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec---CcCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000961 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 200 ~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~---~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd 276 (1208)
+ +..+-..++|.|+|-++|++.....|++||++.-..-+..++. +.....+.+.|+|+|++|+.++..+.+++.|
T Consensus 138 l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 138 L--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred E--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 1 2233345899999999999998889999999875332233332 4466789999999999999999999999999
Q ss_pred CCCCeeEEEeecCCCC---EEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 277 VTKRTGVQTFRREHDR---FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 277 ~~~~~~~~~~~~~~~~---i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
.-+|..+.++..+... --..+++||++++.+|++ |++|.+|++.++..+..
T Consensus 216 Af~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~--------------------------dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 216 AFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD--------------------------DGTIHVWNLETGKKVAV 269 (311)
T ss_pred ccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC--------------------------CCcEEEEEcCCCcEeeE
Confidence 9999999988866543 257789999999999884 77899999999887655
Q ss_pred EeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
..-. + .++++++.|+|.-.+++. ++ ..+.+|-...
T Consensus 270 ~~~~---~---~~~~~~~~fnP~~~mf~s-a~---s~l~fw~p~~ 304 (311)
T KOG1446|consen 270 LRGP---N---GGPVSCVRFNPRYAMFVS-AS---SNLVFWLPDE 304 (311)
T ss_pred ecCC---C---CCCccccccCCceeeeee-cC---ceEEEEeccc
Confidence 4433 1 227888999996654433 22 5777886553
No 103
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=227.22 Aligned_cols=293 Identities=19% Similarity=0.363 Sum_probs=230.6
Q ss_pred EEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC------------------CeEEEEEccCCCCEEEEEEcCCCC
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM------------------HRCLFTLLGHLDYIRTVQFHHEYP 106 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~------------------~~~~~~l~~h~~~I~~v~fs~d~~ 106 (1208)
..+..|++++++.+|+|||.++++|+.|..|+|.|++. ...++++..|.+.|.++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34568999999999999999999999999999999861 135678889999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCeEEEE--EecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccc
Q 000961 107 WIVSASDDQTIRIWNWQSRTCISV--LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (1208)
Q Consensus 107 ~l~s~s~Dg~I~iwd~~s~~~i~~--l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~ 184 (1208)
.|++++.|++|+++|+........ ......+|.++.|+|.|.+|++|..-.++++||+.+.+.-...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa----------- 254 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA----------- 254 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-----------
Confidence 999999999999999874332221 1234578999999999999999999999999999885432110
Q ss_pred cccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec-CcC-CCeEEEEEccCCCE
Q 000961 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR-GHM-NNVSCVMFHAKQDI 262 (1208)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~-~h~-~~V~~l~~sp~g~~ 262 (1208)
..-.+|.+.|+++.+++.|++.++++.||.|++||--++++ +.++. .|. ..|.+..|..+|++
T Consensus 255 -------------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 255 -------------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred -------------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeE
Confidence 12356899999999999999999999999999999988887 54443 454 47999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCeeEEEeecCCCC-----EEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeC
Q 000961 263 IVSNSEDKSIRVWDVTKRTGVQTFRREHDR-----FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (1208)
Q Consensus 263 l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~-----i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d 337 (1208)
+++.+.|..+++|.+.+++++..+.+.... -+...|+....++..-.. ..
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE-------------------------as 374 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE-------------------------AS 374 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc-------------------------cc
Confidence 999999999999999999999988754211 111222222222222111 46
Q ss_pred CeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEc
Q 000961 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (1208)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l 396 (1208)
+.+.-||..++....+.++ || ++.++.+..||.+..++.|+ +|...++|--
T Consensus 375 ~slcsWdaRtadr~~l~sl---gH---n~a~R~i~HSP~~p~FmTcs--dD~raRFWyr 425 (430)
T KOG0640|consen 375 NSLCSWDARTADRVALLSL---GH---NGAVRWIVHSPVEPAFMTCS--DDFRARFWYR 425 (430)
T ss_pred Cceeeccccchhhhhhccc---CC---CCCceEEEeCCCCCceeeec--ccceeeeeee
Confidence 7788999999877666654 33 55999999999999776544 5788898864
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=5.1e-25 Score=225.31 Aligned_cols=282 Identities=18% Similarity=0.356 Sum_probs=228.1
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC------------C------eEEEEecccccCEEEEEEEcCCCE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM------------G------TLIDRFDEHDGPVRGVHFHKSQPL 65 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~------------g------~~i~~l~~h~~~V~~l~fsp~~~~ 65 (1208)
.+..|.+++.+-+|||||.++|+|+.|.+|+|.|++. | -.++++-.|..+|+++.|||....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4678999999999999999999999999999999861 1 356788899999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEE--EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCEEE
Q 000961 66 FVSGGDDYKIKVWNYKMHRCL--FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMC 140 (1208)
Q Consensus 66 Lasgs~Dg~I~vWd~~~~~~~--~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l---~~h~~~V~~ 140 (1208)
|++|+.|++|+++|+...... +..-....+|+++.|+|.|.+|+.|.+-.++++||+.+-+|...- .+|.+.|++
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~ 266 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ 266 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence 999999999999999743221 122235668999999999999999999999999999998886554 478999999
Q ss_pred EEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccC-CCeEEEEEcCCCCEE
Q 000961 141 ASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLI 219 (1208)
Q Consensus 141 l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~L 219 (1208)
+.+++.+++.++++.||.|++||--+.+.... .-..|. ..|.+..|..+|+++
T Consensus 267 V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t--------------------------~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 267 VRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT--------------------------IGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred EEecCCccEEEEeccCCcEEeeccccHHHHHH--------------------------HHhhcCCceeeeEEEccCCeEE
Confidence 99999999999999999999999766554322 223454 468899999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEEeecCcCC---CeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeeEEEee-cCCCCEE
Q 000961 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMN---NVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTGVQTFR-REHDRFW 294 (1208)
Q Consensus 220 ~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~---~V~~l~~sp~g~~l~sgs~-dg~I~vwd~~~~~~~~~~~-~~~~~i~ 294 (1208)
++.+.|..|++|.+.++......+--|.++ --+...|+....+++.-.+ .+.+.-||.++...+..+. +|++.+.
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R 400 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR 400 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCce
Confidence 999999999999999999843333222222 2244567766677666543 4679999998876655443 6888999
Q ss_pred EEEEeCCCCEEEEEECC
Q 000961 295 ILASHPEMNLLAAGHDS 311 (1208)
Q Consensus 295 ~la~sp~~~~la~g~~~ 311 (1208)
.+.-||.+..+.+++++
T Consensus 401 ~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 401 WIVHSPVEPAFMTCSDD 417 (430)
T ss_pred EEEeCCCCCceeeeccc
Confidence 99999999988888764
No 105
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.8e-25 Score=219.85 Aligned_cols=270 Identities=18% Similarity=0.319 Sum_probs=219.0
Q ss_pred EEEEEEeC-CCCEEEEEe-------cCCeEEEEECCCCeEEEEec--ccccCEEEEEEEcCC-CEEEEEECCCeEEEEEC
Q 000961 12 VKGLSFHS-KRPWILASL-------HSGVIQLWDYRMGTLIDRFD--EHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 12 V~~lafsp-dg~~Lasg~-------~dg~I~iWd~~~g~~i~~l~--~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~ 80 (1208)
=.++.||| -.++||++. .+|.+.|-++..++-+..+. .-...+..++|+++. +.+++++.||++++||.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 36889999 334455442 36899999986554444332 356679999999865 47888999999999996
Q ss_pred C-CCeEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeC-CCEEEEEECCC
Q 000961 81 K-MHRCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQ 157 (1208)
Q Consensus 81 ~-~~~~~~~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~-~~~l~s~s~Dg 157 (1208)
. ...++..++.|...|.++.|++.. ..++++|.|++|++|+..-++.+.++.+|+..|....|+|. .+.++++|.||
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 5 346788889999999999999854 46778899999999999999999999999999999999996 48999999999
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNET 236 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~ 236 (1208)
++++||++...+ ...++.|...+.++.|+. +...+++|+.|+.|+.||++.-
T Consensus 171 ~l~lwdvr~~gk---------------------------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 171 TLRLWDVRSPGK---------------------------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred eEEEEEecCCCc---------------------------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 999999876322 224788999999999997 5568899999999999999987
Q ss_pred ceeEEEeecCcCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCC-eeEEEeecCCCCEEEEEEeCC-CCEEEEEE
Q 000961 237 KAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPE-MNLLAAGH 309 (1208)
Q Consensus 237 ~~~~~~~l~~h~~~V~~l~~sp~-g~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~i~~la~sp~-~~~la~g~ 309 (1208)
+. ++..+.+|.-.|+.+.|||. ..+|++++.|-++|+||...+ ..+.+...|..-+..+.|++- ..++|..+
T Consensus 224 r~-pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 224 RT-PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred cc-cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 64 48888999999999999995 568899999999999998744 455566777777888888873 44555433
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=9.6e-25 Score=233.21 Aligned_cols=251 Identities=19% Similarity=0.322 Sum_probs=223.9
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
||..|+||...|+.+.|||+...+++++.|-.|+||.............|+++|+.+..+|+|.||++++.||+....|+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 57789999999999999999999999999999999999888888888899999999999999999999999999999999
Q ss_pred CCCeEEEEEccC--CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 81 KMHRCLFTLLGH--LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 81 ~~~~~~~~l~~h--~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
+++.++...... .-.+++.+|||||..+.+|+.||.|+|||+.++..+..+.+|.++|..++|+.+|-++++++.|+.
T Consensus 333 ~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 333 SSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred cCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence 999988776532 235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|++||++..+.... +.+. ...++.++.|.+.|.+|+.++.|=+|++++-.+...
T Consensus 413 V~lwDLRKl~n~kt-------------------------~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKT-------------------------IQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EEEEEehhhcccce-------------------------eecc-ccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 99999998663321 1222 234799999999999999998888888887666665
Q ss_pred eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000961 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 239 ~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
.++..+..|.+..+++.|....++++++|.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 567888889999999999999999999999999888754
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-23 Score=203.24 Aligned_cols=276 Identities=20% Similarity=0.313 Sum_probs=220.6
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC------C---------eEEEEecccccCEEEEEEEcCCCEEEEEECC
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM------G---------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD 72 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~------g---------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D 72 (1208)
.+..|.+++|+|.|.+-++|+...+.+|.-+.. + .+.++-+.|.+.|.|.+|+|.|.++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 467899999999999999999999999876532 1 1123345799999999999999999999999
Q ss_pred CeEEEEECCCCeEE-----EEEccCCCCEEEEEEcCC----CCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCEEEEE
Q 000961 73 YKIKVWNYKMHRCL-----FTLLGHLDYIRTVQFHHE----YPWIVSAS-DDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1208)
Q Consensus 73 g~I~vWd~~~~~~~-----~~l~~h~~~I~~v~fs~d----~~~l~s~s-~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~ 142 (1208)
.+|++.-+....+. ..+.-|.+.|+.++|..+ +..|++++ .|..|++-|...|+..+.+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 99999876543322 345669999999999754 33566654 36778888999999999999999999876
Q ss_pred EeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec---cCCCeEEEEEcCCCCEE
Q 000961 143 FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG---HDRGVNWAAFHPTLPLI 219 (1208)
Q Consensus 143 ~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~g~~L 219 (1208)
++-++-.+++|+.|.+|++||++-......... .+.+ ....|.+++..|.|++|
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-----------------------~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-----------------------DFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccC-----------------------cccCCCcccceeEEEEECCCccee
Confidence 455688999999999999999976443321110 0111 13568899999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEEeecCCCCEEE
Q 000961 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTFRREHDRFWI 295 (1208)
Q Consensus 220 ~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~----~~~~~~~~~~~~i~~ 295 (1208)
++|..|....+||++.+.. ++.+..|+..|.|+.|+|...++++++.|..|++-|+... -++.....|.+.+..
T Consensus 247 ~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~ 324 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQ 324 (350)
T ss_pred eeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEE
Confidence 9999999999999999997 8999999999999999999999999999999999998632 223345567888889
Q ss_pred EEEeCCCCEEEEEE
Q 000961 296 LASHPEMNLLAAGH 309 (1208)
Q Consensus 296 la~sp~~~~la~g~ 309 (1208)
+.|+|+.-.+.+.+
T Consensus 325 ~rwh~~d~sfisss 338 (350)
T KOG0641|consen 325 CRWHPQDFSFISSS 338 (350)
T ss_pred EEecCccceeeecc
Confidence 99999776555544
No 108
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.7e-25 Score=222.17 Aligned_cols=242 Identities=24% Similarity=0.458 Sum_probs=207.3
Q ss_pred CCCEEEEEEeCC-CCEEEEEecCCeEEEEECCC-CeEEEEecccccCEEEEEEEcC-CCEEEEEECCCeEEEEECCCCeE
Q 000961 9 SNRVKGLSFHSK-RPWILASLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMHRC 85 (1208)
Q Consensus 9 ~~~V~~lafspd-g~~Lasg~~dg~I~iWd~~~-g~~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1208)
.+.+..++|++. .+.+++++.||+++|||... ..+++.+++|...|.++.|++. +..+++++.|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 467889999984 56778888999999999643 3678899999999999999985 45688889999999999999999
Q ss_pred EEEEccCCCCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee-CCCEEEEEECCCeEEEEE
Q 000961 86 LFTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 86 ~~~l~~h~~~I~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg~V~vwd 163 (1208)
+.++.+|...|....|||. .+.++++|.|+++++||++..-....+..|...+.|+.|+. +.+.++||+.|+.|+.||
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 9999999999999999996 45899999999999999985444444889999999999987 447899999999999999
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEE
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAWEVD 242 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~L~sgs~dg~I~iwd~~~~~~~~~~ 242 (1208)
++..+.. ...+.+|.-.|..+.|||. ...|++++.|-+++|||...+.. .+.
T Consensus 220 ir~~r~p--------------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-~~e 272 (311)
T KOG0277|consen 220 IRNLRTP--------------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-AIE 272 (311)
T ss_pred hhhcccc--------------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-hhh
Confidence 9986632 3467899999999999995 45889999999999999885443 155
Q ss_pred eecCcCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeC
Q 000961 243 TLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 243 ~l~~h~~~V~~l~~sp-~g~~l~sgs~dg~I~vwd~ 277 (1208)
+...|+.-+..+.|++ ++.++++++.|+.+.||+.
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 6678899999999998 6778999999999999984
No 109
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.9e-25 Score=237.78 Aligned_cols=238 Identities=22% Similarity=0.363 Sum_probs=207.5
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeE
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRC 85 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~ 85 (1208)
--...|.++.|-.||++||+|...|.|+|+|+++...+..+.+|+.||..+.|+|+++ .|++|++|+.+++||+.+...
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 3456799999999999999999999999999888778889999999999999999655 788899999999999999888
Q ss_pred EEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCC-eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEE
Q 000961 86 LFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 86 ~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~-~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwd 163 (1208)
...+.+|+++|+|.+|+|-.. .++|||.||+|++||.++. ..+..+. |..+|..+.+-|.|..|++++ ...|+|||
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWD 223 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWD 223 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEE
Confidence 779999999999999999765 8899999999999999977 5555555 999999999999999999988 56899999
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~ 243 (1208)
+.++.+.. .....|...|+|+.+..++..|++|+-||.|++||+.+-+. +..
T Consensus 224 l~~G~qll--------------------------~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv--v~s 275 (487)
T KOG0310|consen 224 LTTGGQLL--------------------------TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV--VHS 275 (487)
T ss_pred ecCCceeh--------------------------hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE--EEe
Confidence 98654332 13345999999999999999999999999999999877774 444
Q ss_pred ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000961 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (1208)
Q Consensus 244 l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vw 275 (1208)
+ ...++|.+++.+|+++.++.|..||.+.+-
T Consensus 276 ~-~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 276 W-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred e-ecccceeeEEecCCCceEEEecccceeeee
Confidence 3 357899999999999999999999987765
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=222.31 Aligned_cols=296 Identities=24% Similarity=0.447 Sum_probs=242.3
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
++++.+.+|...|..++-....+.+.+++.|.+-+||.+++++|+.++.||.+.|.++.|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ------CCC----------------------------------CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 122 ------WQS----------------------------------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 122 ------~~s----------------------------------~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
+.+ +.++..+++|...|.+..|...|+.+++++.|.+-.+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 111 0345677899999999999999999999999999999
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~ 241 (1208)
||+.++... ..+.||+...+.++-+|..+++++.+.|-+.++||++..- ..+
T Consensus 299 wDVEtge~v---------------------------~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI-~sV 350 (481)
T KOG0300|consen 299 WDVETGEVV---------------------------NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-QSV 350 (481)
T ss_pred eeeccCcee---------------------------ccccCcchhccccccCCcceEEEEeccCceeEeccchhhc-cee
Confidence 999986643 3788999999999999999999999999999999999543 358
Q ss_pred EeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-eEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCC
Q 000961 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT-GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLER 320 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~ 320 (1208)
..+.||...|+++.|..+. .+++|+.|.+|+|||+++.+ ++.+++ ...++..++.+..+.+++.-+|
T Consensus 351 ~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhD---------- 418 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHD---------- 418 (481)
T ss_pred eeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccC----------
Confidence 8899999999999998764 58999999999999998754 455554 4456777777777777777664
Q ss_pred CcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCE--EEEEEecCCCEEEEEEccC
Q 000961 321 ERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENA--VLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 321 ~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~--llv~~~~~~g~v~l~~l~~ 398 (1208)
++.|++||++......+-...+.+| ...+++.+|..+... ++. .+ -|..+.-|.+..
T Consensus 419 ----------------NRqvRlfDlnG~RlaRlPrtsRqgH---rRMV~c~AW~eehp~cnLft-cG-FDR~v~gW~in~ 477 (481)
T KOG0300|consen 419 ----------------NRQVRLFDLNGNRLARLPRTSRQGH---RRMVTCCAWLEEHPACNLFT-CG-FDRMVAGWKINT 477 (481)
T ss_pred ----------------CceEEEEecCCCccccCCccccccc---ceeeeeeeccccCccccccc-cc-ccceeeeeEecc
Confidence 6789999998766544444445555 338899999854321 222 22 345666677653
No 111
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.4e-23 Score=249.08 Aligned_cols=233 Identities=11% Similarity=0.190 Sum_probs=187.2
Q ss_pred ceEeecCCCCEEEEEEeCC-CCEEEEEecCCeEEEEECCCCe--------EEEEecccccCEEEEEEEcCCCE-EEEEEC
Q 000961 2 LTKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYRMGT--------LIDRFDEHDGPVRGVHFHKSQPL-FVSGGD 71 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspd-g~~Lasg~~dg~I~iWd~~~g~--------~i~~l~~h~~~V~~l~fsp~~~~-Lasgs~ 71 (1208)
+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. |++++.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence 3578999999999999996 7899999999999999997642 34467899999999999999875 578999
Q ss_pred CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEE-----EEeeC
Q 000961 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA-----SFHPK 146 (1208)
Q Consensus 72 Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l-----~~~p~ 146 (1208)
|++|+|||+.+++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|.+.+.+. .|+++
T Consensus 147 DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 9999999999998887776 66889999999999999999999999999999999999999998765433 34578
Q ss_pred CCEEEEEECCC----eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEE
Q 000961 147 EDLVVSASLDQ----TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG 222 (1208)
Q Consensus 147 ~~~l~s~s~Dg----~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sg 222 (1208)
+.+|++++.|+ +|++||++...... ....+..+.+.+...-..++|.++++|
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl------------------------~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSAL------------------------VTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCce------------------------EEEEecCCccceEEeeeCCCCCEEEEE
Confidence 88999988774 79999998632110 111233344444444445678899999
Q ss_pred eCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC
Q 000961 223 ADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 223 s~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g 260 (1208)
+.|+.|++|++..+....+.... +..++.+++|.|+.
T Consensus 282 kGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 282 KGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 99999999999887643333333 56788899999965
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.5e-25 Score=234.24 Aligned_cols=274 Identities=20% Similarity=0.372 Sum_probs=230.1
Q ss_pred ceEeecCCCCEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 2 LTKFETKSNRVKGLSFHSKR-PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg-~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+.+..++.+|+.|.+.|++|+++. ..++++|+|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45789999999999999977 7899999999999999999999999999999999999987 67899999999999998
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTV 159 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V 159 (1208)
+- .++.++.+ ...+..+.-+..+..++|++. .|.|||.+-..+++.+.-....|.++.|+|.. ..|+++..|+.|
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 74 56677654 345667777777778888875 59999999889999998778889999999976 567777799999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
.+||++....... .++ ...-+.++|+|.+-.+++|+.|..++.||++.-+.
T Consensus 213 vLyD~R~~~Pl~K-------------------------Vi~---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~- 263 (433)
T KOG0268|consen 213 VLYDLRQASPLKK-------------------------VIL---TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR- 263 (433)
T ss_pred EEEecccCCccce-------------------------eee---eccccceecCccccceeeccccccceehhhhhhcc-
Confidence 9999988554321 111 23346799999888899999999999999987654
Q ss_pred EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee-cCCCCEEEEEEeCCCCEEEEEEC
Q 000961 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 240 ~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
++....+|.+.|.++.|||.|+-+++||.|.+|+||....+..-..+. ..-..|.++.||.|.+++.+|+|
T Consensus 264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC
Confidence 377788999999999999999999999999999999988765443322 12246899999999999999996
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=6.3e-24 Score=229.33 Aligned_cols=281 Identities=23% Similarity=0.361 Sum_probs=236.9
Q ss_pred EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE----E-------------E-ccCCCCEEEEEEcCCC
Q 000961 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF----T-------------L-LGHLDYIRTVQFHHEY 105 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~----~-------------l-~~h~~~I~~v~fs~d~ 105 (1208)
...+..|.-+|.+++++|+..+..+++.+|+|.-|++.+++... + - .+|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45566899999999999999999999999999999998876331 1 1 2688899999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeecccc
Q 000961 106 PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185 (1208)
Q Consensus 106 ~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~ 185 (1208)
++|++|+.|..|.||+.++.+.+..+++|.+.|.+++|-...+.+++++.|++|++|++.......
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve-------------- 280 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE-------------- 280 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH--------------
Confidence 999999999999999999999999999999999999999888899999999999999997654332
Q ss_pred ccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEE
Q 000961 186 TDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVS 265 (1208)
Q Consensus 186 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~s 265 (1208)
++.+|...|..+....-++.+-+|+.|+++++|++.... ...+++|.+.+.|++|-. ...+++
T Consensus 281 -------------tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---qlifrg~~~sidcv~~In-~~Hfvs 343 (479)
T KOG0299|consen 281 -------------TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFIN-DEHFVS 343 (479)
T ss_pred -------------HHhCCccceeeechhcccceEEeccccceeEEEeccccc---eeeeeCCCCCeeeEEEec-ccceee
Confidence 677899999999999888888888899999999997665 456788999999999974 567999
Q ss_pred EeCCCcEEEEeCCCCeeEEEeecCC------------CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEE
Q 000961 266 NSEDKSIRVWDVTKRTGVQTFRREH------------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLF 333 (1208)
Q Consensus 266 gs~dg~I~vwd~~~~~~~~~~~~~~------------~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~ 333 (1208)
||.+|.|.+|++.+.+++.+.+..+ ..|++++..|...++|+|+
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS------------------------ 399 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS------------------------ 399 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC------------------------
Confidence 9999999999999999888765321 1678899999999999988
Q ss_pred EEeCCeEEEEEccCC--cceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecC
Q 000961 334 YAKDRFLRYYEFSTQ--KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD 387 (1208)
Q Consensus 334 ~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~ 387 (1208)
.+|.|++|-+..+ ...++.+++ +.+.|.+++|+++|+.+++..+-+
T Consensus 400 --~~G~vrLW~i~~g~r~i~~l~~ls------~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 400 --WSGCVRLWKIEDGLRAINLLYSLS------LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred --CCCceEEEEecCCccccceeeecc------cccEEEEEEEccCCCEEEEecccc
Confidence 4677888888876 222333333 244899999999999888876633
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.7e-24 Score=253.29 Aligned_cols=305 Identities=21% Similarity=0.344 Sum_probs=238.8
Q ss_pred cccCEEEEEEEcCCCEEEEEE--CCCeEEEEECCC------------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC
Q 000961 50 HDGPVRGVHFHKSQPLFVSGG--DDYKIKVWNYKM------------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ 115 (1208)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs--~Dg~I~vWd~~~------------~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg 115 (1208)
++..|.+++.||++..++||| .||.++||+.+. .+.+.++..|.+.|.|+.|+|||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 445689999999999999999 899999998642 345677788999999999999999999999999
Q ss_pred cEEEEECCC------------------CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCc
Q 000961 116 TIRIWNWQS------------------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177 (1208)
Q Consensus 116 ~I~iwd~~s------------------~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~ 177 (1208)
.|.||.... .+++..+.+|...|..+.|+|++.++++++.|++|.+|+..+.+.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~-------- 163 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL-------- 163 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee--------
Confidence 999998762 247788899999999999999999999999999999999988632
Q ss_pred ceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCc------CCCe
Q 000961 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH------MNNV 251 (1208)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h------~~~V 251 (1208)
...+.+|.+.|..+.|.|-|++|++-++|++|++|+..+... .+.+.++ ...+
T Consensus 164 -------------------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i--~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 164 -------------------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI--EKSITKPFEESPLTTFF 222 (942)
T ss_pred -------------------eeeeecccccccceEECCccCeeeeecCCceEEEEEccccee--eEeeccchhhCCCccee
Confidence 337889999999999999999999999999999999777544 3333333 3357
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCC---CEEEEEECCCeeeEeeCCCcce
Q 000961 252 SCVMFHAKQDIIVSNS----EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEM---NLLAAGHDSGMIVFKLERERPA 324 (1208)
Q Consensus 252 ~~l~~sp~g~~l~sgs----~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~---~~la~g~~~gi~v~~l~~~~~~ 324 (1208)
..+.|||||.+|++.- .-.++.|.+-.+.+.-..+-+|..++.++.|+|.- +.- +|. ..++.
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~-----ng~------~~~~~ 291 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK-----NGT------STQPN 291 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc-----cCC------ccCCC
Confidence 8899999999998853 23468888888888888899999999999999831 000 000 00000
Q ss_pred EEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCC
Q 000961 325 FAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (1208)
Q Consensus 325 ~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~ 403 (1208)
..-..++++ .|++|.+|.....+ +++.+..... . .|..++|+|||..+++|+- ||+|.++.+.....|.
T Consensus 292 --~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~~lf~-~---SI~DmsWspdG~~LfacS~--DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 292 --CYYCIAAVGSQDRSLSVWNTALPR--PLFVIHNLFN-K---SIVDMSWSPDGFSLFACSL--DGTVALIHFEEKELGV 361 (942)
T ss_pred --cceEEEEEecCCccEEEEecCCCC--chhhhhhhhc-C---ceeeeeEcCCCCeEEEEec--CCeEEEEEcchHHhCc
Confidence 000122233 79999999985543 4555444332 3 8999999999999888764 7899999988766554
Q ss_pred C
Q 000961 404 G 404 (1208)
Q Consensus 404 ~ 404 (1208)
.
T Consensus 362 ~ 362 (942)
T KOG0973|consen 362 A 362 (942)
T ss_pred c
Confidence 4
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=4.2e-25 Score=234.91 Aligned_cols=286 Identities=25% Similarity=0.415 Sum_probs=239.7
Q ss_pred EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe--EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000961 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~--~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iw 120 (1208)
....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.|..+.|+.+.|.+++..+++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 344567899999999999999999999999999999987666 677888899999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 121 d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
++.+.+...++.+|.+.|+++.|.-....+++|+.|.+|+.||+........ .+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt--------------------------~l 300 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT--------------------------VL 300 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc--------------------------cc
Confidence 9999999999999999999999987776799999999999999987443221 11
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
. ...++.+..+ ...+++|..|+.|++||.++... ......+. .|+++..+++|..+.+++.|.++.+.|+++.
T Consensus 301 ~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~--~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 301 P--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK--TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred c--cccccceEec--ceeeeecccccceEEEeccCCce--eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 1 1233444444 45789999999999999999886 55555554 8999999999999999999999999999999
Q ss_pred eeEEEeecCC----CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEee
Q 000961 281 TGVQTFRREH----DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (1208)
Q Consensus 281 ~~~~~~~~~~----~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~ 356 (1208)
...+++.... ...+.+.|||++.|+++|+ .|+.|++|++.+++.......
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS--------------------------~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS--------------------------ADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeecc--------------------------CCCcEEEEEccCceEEEEecc
Confidence 8888877443 3477899999999999998 578899999999998776655
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEE
Q 000961 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELY 394 (1208)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~ 394 (1208)
.... + .|++++|+|.|..++.++. ++.+.+|
T Consensus 428 s~s~--~---aI~s~~W~~sG~~Llsadk--~~~v~lW 458 (459)
T KOG0288|consen 428 STSN--A---AITSLSWNPSGSGLLSADK--QKAVTLW 458 (459)
T ss_pred CCCC--c---ceEEEEEcCCCchhhcccC--CcceEec
Confidence 5422 2 7999999999998876543 5677777
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.5e-24 Score=240.73 Aligned_cols=281 Identities=19% Similarity=0.253 Sum_probs=239.0
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCC
Q 000961 97 RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (1208)
Q Consensus 97 ~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~ 176 (1208)
.-+.|+.. +.+++|. ...|++|+-.++........+...|+++.|+++|.+|++|..+|.|.+||....+...
T Consensus 181 nlldWss~-n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~----- 253 (484)
T KOG0305|consen 181 NLLDWSSA-NVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR----- 253 (484)
T ss_pred hHhhcccC-CeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-----
Confidence 34677743 3555554 5689999999998776666668999999999999999999999999999988755433
Q ss_pred cceeeccccccccccccceEEEEEec-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEE
Q 000961 177 DILRLSQMNTDLFGGVDAVVKYVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255 (1208)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~ 255 (1208)
.+.+ |...|.+++|. +..+.+|+.++.|..+|++..+.... ++.+|...|..+.
T Consensus 254 ----------------------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 254 ----------------------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLK 308 (484)
T ss_pred ----------------------cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeE
Confidence 3334 89999999998 56899999999999999998876322 5889999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeC-CCCEEEEEECCCeeeEeeCCCcceEEecCCEEEE
Q 000961 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (1208)
Q Consensus 256 ~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp-~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~ 334 (1208)
|++|+.++++|+.|+.+.|||.....+...+..|...|..++|+| ...+||+|+..
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs----------------------- 365 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS----------------------- 365 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC-----------------------
Confidence 999999999999999999999988899999999999999999999 56688887643
Q ss_pred EeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCc
Q 000961 335 AKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGL 414 (1208)
Q Consensus 335 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~ 414 (1208)
.|+.|++||..+++.+...... . .|.++.|++..+.++++.|...+.+.||.++... ....+.+|...
T Consensus 366 -~D~~i~fwn~~~g~~i~~vdtg-----s---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~---~~~~l~gH~~R 433 (484)
T KOG0305|consen 366 -ADRCIKFWNTNTGARIDSVDTG-----S---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK---LVAELLGHTSR 433 (484)
T ss_pred -cccEEEEEEcCCCcEecccccC-----C---ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc---eeeeecCCcce
Confidence 4999999999998875543322 2 8999999999999999988888899999998732 23367899999
Q ss_pred eEEEEEEeCCcEEEEEcCCCEEEEEecCCc
Q 000961 415 GGSAIFIARNRFAVLDKSSNQVLVKNLKNE 444 (1208)
Q Consensus 415 i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~ 444 (1208)
|..++++|||..+++++.|.++++|++-+.
T Consensus 434 Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 434 VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999999998753
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3e-23 Score=214.04 Aligned_cols=271 Identities=18% Similarity=0.305 Sum_probs=224.5
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1208)
...|++|.|+|.+..|++++-||++++||+....+...+ .|..|+.+++|.++ ..+++|+.||.|+.+|+.++... .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-Q 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-e
Confidence 678999999999999999999999999999888666666 59999999999874 46899999999999999987654 4
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 000961 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~ 168 (1208)
+..|..+|+++.+++....+++||.|++|++||.+.......+.. ...|.|+... ++.|++|+.|..|.+||+++..
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 556999999999999888999999999999999987666665553 3478888775 7889999999999999999865
Q ss_pred cccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEeecC
Q 000961 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTLRG 246 (1208)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~--~~~~~l~~ 246 (1208)
..... .-..-.-.+.++++.|++.-.++++-||.|.+=.++.... .....++.
T Consensus 167 ~~~q~-------------------------reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 167 EPFQR-------------------------RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred chhhh-------------------------ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 43210 1112234578999999888899999999998876665511 01334444
Q ss_pred cC---------CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 247 HM---------NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 247 h~---------~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
|. .+|.+++|||-...|+||+.||.|.+||..+.+.+..+......|.+++|+.+|..||+++.
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 43 36899999999999999999999999999999999999888888999999999999999874
No 118
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=227.24 Aligned_cols=302 Identities=19% Similarity=0.325 Sum_probs=225.0
Q ss_pred EEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC----eEEEEE-ccCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH----RCLFTL-LGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~----~~~~~l-~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~i 119 (1208)
-.+++|...|+++++.|.|-+|++|+.|.+|++||+... +....+ ......|.++.|++.+..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 456788999999999999999999999999999998742 222222 234558999999999999999999999999
Q ss_pred EECCCCeEEEE------------EecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccc
Q 000961 120 WNWQSRTCISV------------LTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNT 186 (1208)
Q Consensus 120 wd~~s~~~i~~------------l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~ 186 (1208)
+|-...+.... .+||...++|.+|+|.. ..+++++.||++|+||+...+....
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q-------------- 306 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ-------------- 306 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee--------------
Confidence 99654433322 35799999999999976 6899999999999999987543211
Q ss_pred cccccccceEEE-EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEeecCcCC--CeEEEEEccCCCE
Q 000961 187 DLFGGVDAVVKY-VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTLRGHMN--NVSCVMFHAKQDI 262 (1208)
Q Consensus 187 ~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~-~~~l~~h~~--~V~~l~~sp~g~~ 262 (1208)
+++. ...+..-+++.++|+|+|++|++|+.||.|.+|+..+....+ ...-..|.. .|+|+.||++|++
T Consensus 307 --------Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~ 378 (641)
T KOG0772|consen 307 --------VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY 378 (641)
T ss_pred --------EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch
Confidence 0111 122345578999999999999999999999999975543221 233345666 8999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCe-eEEEeecCCC--CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCe
Q 000961 263 IVSNSEDKSIRVWDVTKRT-GVQTFRREHD--RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRF 339 (1208)
Q Consensus 263 l~sgs~dg~I~vwd~~~~~-~~~~~~~~~~--~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~ 339 (1208)
|++-+.|+++++||++..+ ++....+-.. .-+.++|||+.+++++|+.-. ... ..+.
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~-------~~~-------------~~g~ 438 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP-------NGM-------------TAGT 438 (641)
T ss_pred hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc-------CCC-------------CCce
Confidence 9999999999999998643 4444333222 346789999999999986311 000 3567
Q ss_pred EEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 340 LRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 340 i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
+.+||..+-+.+..+.+.. . .+..+.|+|.=+.+.+.++ ||.+++|--+
T Consensus 439 L~f~d~~t~d~v~ki~i~~----a---Svv~~~WhpkLNQi~~gsg--dG~~~vyYdp 487 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDIST----A---SVVRCLWHPKLNQIFAGSG--DGTAHVYYDP 487 (641)
T ss_pred EEEEeccceeeEEEecCCC----c---eEEEEeecchhhheeeecC--CCceEEEECc
Confidence 8888888766655554442 2 7788899998888877555 4666665433
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.6e-23 Score=212.02 Aligned_cols=295 Identities=15% Similarity=0.186 Sum_probs=223.0
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE--EEe--cccccCEEEEEEEcCCCEEEEE-ECCCeEE
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI--DRF--DEHDGPVRGVHFHKSQPLFVSG-GDDYKIK 76 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i--~~l--~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~ 76 (1208)
+..|++|++.|++++|+.||++||+++.|++|+||++++.... +.+ .-.-+.-+.+.|+||-+-+++. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3468999999999999999999999999999999998764211 111 0111234789999998866554 4456899
Q ss_pred EEECCC---CeEEEE---------EccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEe
Q 000961 77 VWNYKM---HRCLFT---------LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144 (1208)
Q Consensus 77 vWd~~~---~~~~~~---------l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~ 144 (1208)
+|.+.. |..... -..|.-.|..+-...++.+|++++.|..|.+|++. |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 997642 221111 12456677778888889999999999999999998 88888887766777888999
Q ss_pred eCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 145 p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
|+|+++++++-.--|+||.+--.+..... .....+.+.||...|.+++|+|+...+++.+.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fq-------------------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQ-------------------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchh-------------------hhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 99999999999999999997332211110 11123578999999999999999999999999
Q ss_pred CCcEEEEECCCC-------ceeEEE--eecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee-cCCCCEE
Q 000961 225 DRQVKLWRMNET-------KAWEVD--TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFW 294 (1208)
Q Consensus 225 dg~I~iwd~~~~-------~~~~~~--~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~i~ 294 (1208)
||++++||.+-. +..... .+....+....+.++|+|+.|+.+.. ..+.++..++++....+. .|...|.
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCcee
Confidence 999999997632 111111 11222344558999999998887654 579999999888776665 5777899
Q ss_pred EEEEeCCCCEEEEEECCCeeeEe
Q 000961 295 ILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 295 ~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
+++|+++|++++++++..++++.
T Consensus 378 ~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred eEEecCCCcEEeeecceeeeeec
Confidence 99999999999999987777665
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-22 Score=208.86 Aligned_cols=251 Identities=22% Similarity=0.333 Sum_probs=203.8
Q ss_pred EEEEecCCeEEEEECCC------------CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEcc
Q 000961 24 ILASLHSGVIQLWDYRM------------GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (1208)
Q Consensus 24 Lasg~~dg~I~iWd~~~------------g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~ 91 (1208)
+++|+....|.=+++.- -..+..+..|.++|++++. +++++|+||.|-+|+|||+.+...+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 55666665555554321 1224556789999999998 688999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCC--EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcc
Q 000961 92 HLDYIRTVQFHHEYP--WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (1208)
Q Consensus 92 h~~~I~~v~fs~d~~--~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~ 169 (1208)
|.+.|+++.|.+... +|++|++||.|.+|+..+..++..+++|.+.|+.++.||.+++-++.+.|+.++.||+-.++.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999999876 999999999999999999999999999999999999999999999999999999999987664
Q ss_pred ccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCC
Q 000961 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249 (1208)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~ 249 (1208)
.... .+ .+ .-+.+.|+|.|.+++.++.++ |-+|.+.+.+. ........
T Consensus 162 a~v~-------------------------~L-~~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v---~~~i~~~~ 209 (362)
T KOG0294|consen 162 AFVL-------------------------NL-KN--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASV---FREIENPK 209 (362)
T ss_pred ceee-------------------------cc-CC--cceeeEEcCCCCEEEEEeccE-EEEEecccHhH---hhhhhccc
Confidence 3211 11 11 223389999999999988665 88999888774 22222224
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEE--eCCCCEEEEEE
Q 000961 250 NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS--HPEMNLLAAGH 309 (1208)
Q Consensus 250 ~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~--sp~~~~la~g~ 309 (1208)
.+.++.|. ++..+++|+.|+.|++||..+..+...+..|..+|..+.+ .|++.+|++.+
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEec
Confidence 56777776 5778999999999999999999999999999999999874 35666777666
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.7e-23 Score=208.39 Aligned_cols=250 Identities=20% Similarity=0.351 Sum_probs=210.4
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC---eEEEEecccccCEEEEEEEc--CCCEEEEEECCCeEEEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g---~~i~~l~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vW 78 (1208)
.-..|.+-|..+...--|++||++++|++|+|+.++.. +++.++.+|.+||..++|.. .|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34578999999888888999999999999999998754 57889999999999999965 78999999999999999
Q ss_pred ECCCCeE--EEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCEEEEEEeeC---C-
Q 000961 79 NYKMHRC--LFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYVMCASFHPK---E- 147 (1208)
Q Consensus 79 d~~~~~~--~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s~---~~i~~l~~h~~~V~~l~~~p~---~- 147 (1208)
..++++. ......|...|.+++|.|. |..|++++.||.|.|.+.++. ........|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 9988753 3456789999999999886 458999999999999988754 223445789999999999986 3
Q ss_pred ----------CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-
Q 000961 148 ----------DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL- 216 (1208)
Q Consensus 148 ----------~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g- 216 (1208)
+.|++|+.|..|+||+....+-. ....+.+|...|..++|.|.-
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-------------------------~e~~l~~H~dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-------------------------LERTLEGHKDWVRDVAWAPSVG 220 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchh-------------------------hhhhhhhcchhhhhhhhccccC
Confidence 56999999999999998774221 223588999999999999964
Q ss_pred ---CEEEEEeCCCcEEEEECCCC-ceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 217 ---PLIVSGADDRQVKLWRMNET-KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 217 ---~~L~sgs~dg~I~iwd~~~~-~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
.+|++++.||+|.||..... ..|....+......+..++||+.|+.|++++.|+.+.+|.-.
T Consensus 221 l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 221 LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 47999999999999987743 445555666677889999999999999999999999999643
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.4e-23 Score=207.27 Aligned_cols=239 Identities=22% Similarity=0.293 Sum_probs=197.9
Q ss_pred cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC---eEEEEEccCCCCEEEEEEcC--CCCEEEEEECCCcEEEEEC
Q 000961 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 48 ~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~---~~~~~l~~h~~~I~~v~fs~--d~~~l~s~s~Dg~I~iwd~ 122 (1208)
..|+..|..+...--|++|||++.|++|+|+..++. +.+.++.||.++|..++|.+ -|..|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 469999999999899999999999999999998753 57889999999999999987 7899999999999999998
Q ss_pred CCCe--EEEEEecCCCCEEEEEEeeCC--CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 123 QSRT--CISVLTGHNHYVMCASFHPKE--DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 123 ~s~~--~i~~l~~h~~~V~~l~~~p~~--~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
.+++ .......|...|++++|.|.+ -.|++++.||.|.|.+.+.... .....
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~------------------------w~t~k 143 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG------------------------WTTSK 143 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC------------------------ccchh
Confidence 8774 334557899999999999975 6889999999999999876311 11123
Q ss_pred EEeccCCCeEEEEEcCC---C-----------CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC----
Q 000961 199 VLEGHDRGVNWAAFHPT---L-----------PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ---- 260 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~sp~---g-----------~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g---- 260 (1208)
....|.-+|++++|.|. | +.|++|+.|..|+||+..++.-..-.++.+|.+.|+.++|.|.-
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCc
Confidence 56689999999999986 4 46999999999999999987433345599999999999999953
Q ss_pred CEEEEEeCCCcEEEEeCCCCee---EEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 261 DIIVSNSEDKSIRVWDVTKRTG---VQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 261 ~~l~sgs~dg~I~vwd~~~~~~---~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
.+|++++.||++.||....... ...+....+.++.++||+.|++|+++.+
T Consensus 224 s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 224 STIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG 276 (299)
T ss_pred eeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC
Confidence 5799999999999998663211 1223345678999999999999998763
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=5.6e-23 Score=222.68 Aligned_cols=247 Identities=23% Similarity=0.418 Sum_probs=204.9
Q ss_pred ecCCCCEEEEEEeCCCC-EEEEEecCCeEEEEECCCCe----------EEEEecccccCEEEEEEEcCCC-EEEEEECCC
Q 000961 6 ETKSNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMGT----------LIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDY 73 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~-~Lasg~~dg~I~iWd~~~g~----------~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg 73 (1208)
--|.+.|+.+.+-|+.+ .+|+.+..+.|.|||+.+-. .-.++.+|...=.+++|++... .|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 35888999999999665 55666788999999985421 1226778998888999998765 899999999
Q ss_pred eEEEEECCCC-------eEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECC--CCeEEEEEecCCCCEEEEEE
Q 000961 74 KIKVWNYKMH-------RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASF 143 (1208)
Q Consensus 74 ~I~vWd~~~~-------~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~--s~~~i~~l~~h~~~V~~l~~ 143 (1208)
+|++||+... .....+.+|.+.|..++|++-.. .++++++|+.+.|||.+ +.++.....+|...|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 9999999743 23456789999999999999654 78899999999999999 56667778899999999999
Q ss_pred eeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-CEEEE
Q 000961 144 HPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVS 221 (1208)
Q Consensus 144 ~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~L~s 221 (1208)
+|-+ ..|++||.|++|.+||++++... .+.+.+|...|..+.|+|.. ..|++
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~--------------------------lh~~e~H~dev~~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKP--------------------------LHTFEGHEDEVFQVEWSPHNETVLAS 334 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccC--------------------------ceeccCCCcceEEEEeCCCCCceeEe
Confidence 9955 78899999999999999987653 34789999999999999964 57889
Q ss_pred EeCCCcEEEEECCCCce------------eEEEeecCcCCCeEEEEEccCCCE-EEEEeCCCcEEEEeCC
Q 000961 222 GADDRQVKLWRMNETKA------------WEVDTLRGHMNNVSCVMFHAKQDI-IVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 222 gs~dg~I~iwd~~~~~~------------~~~~~l~~h~~~V~~l~~sp~g~~-l~sgs~dg~I~vwd~~ 278 (1208)
++.|+.+.+||+..-.. ..+..-.||...|..+.|+|+..+ |++.++|+.+.||.+.
T Consensus 335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999999999864221 124667899999999999998765 6778899999999976
No 124
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7e-22 Score=203.40 Aligned_cols=309 Identities=19% Similarity=0.295 Sum_probs=219.0
Q ss_pred EEEEECCCCeEEE-----EecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe-----EEEEEccCCCCEEEEEEc
Q 000961 33 IQLWDYRMGTLID-----RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-----CLFTLLGHLDYIRTVQFH 102 (1208)
Q Consensus 33 I~iWd~~~g~~i~-----~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-----~~~~l~~h~~~I~~v~fs 102 (1208)
++-|+.+..+..+ .+++|.+.|++++|+.||++|+|++.|++|++|+++... +++. .-.-+..+.+.|+
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFA 141 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEEC
Confidence 5556655544443 457999999999999999999999999999999987521 2211 1122356889999
Q ss_pred CCCCE-EEEEECCCcEEEEECCCCe---EEE---------EEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcc
Q 000961 103 HEYPW-IVSASDDQTIRIWNWQSRT---CIS---------VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (1208)
Q Consensus 103 ~d~~~-l~s~s~Dg~I~iwd~~s~~---~i~---------~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~ 169 (1208)
||-+- ++++-...++++|.+...+ ... .-..|.-.+..+-...++.+|++++.|..|.+|++++...
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L 221 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLL 221 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCcee
Confidence 99874 4555566789999764221 111 1123556677777777789999999999999999985221
Q ss_pred ccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eeEEEe
Q 000961 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK------AWEVDT 243 (1208)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~------~~~~~~ 243 (1208)
. .+......-...+.||+|+++++++..--|++|..--++ ...+..
T Consensus 222 ~----------------------------~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~ 273 (420)
T KOG2096|consen 222 Q----------------------------SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS 273 (420)
T ss_pred e----------------------------eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence 1 222333445568999999999999999999999864322 123677
Q ss_pred ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcc
Q 000961 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323 (1208)
Q Consensus 244 l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~ 323 (1208)
+.||...|..++|+|+...+++.|.||++++||..-. +.... |..+|-.
T Consensus 274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr-----Y~~~q----------Dpk~Lk~---------------- 322 (420)
T KOG2096|consen 274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR-----YEAGQ----------DPKILKE---------------- 322 (420)
T ss_pred eccchhheeeeeeCCCcceeEEEecCCcEEEeeccce-----EecCC----------CchHhhc----------------
Confidence 8999999999999999999999999999999997521 11111 1111111
Q ss_pred eEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCC
Q 000961 324 AFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (1208)
Q Consensus 324 ~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~ 403 (1208)
+. .++...+. .+..++.+|.|+.++++.+ ..+++|.........
T Consensus 323 ------------------------g~----~pl~aag~-----~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 323 ------------------------GS----APLHAAGS-----EPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYP 366 (420)
T ss_pred ------------------------CC----cchhhcCC-----CceEEEeCCCCcEEEeecC---CceEEEEcccCccch
Confidence 10 01111121 4558999999999998887 678888876543222
Q ss_pred CcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEe
Q 000961 404 GDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKN 440 (1208)
Q Consensus 404 ~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwd 440 (1208)
. .-..|.+.|.++.|+++|+++++++ |..+++..
T Consensus 367 ~--~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 367 E--LEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred h--HHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 2 2356888999999999999999999 78888865
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=9.7e-21 Score=215.54 Aligned_cols=287 Identities=15% Similarity=0.144 Sum_probs=215.7
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEE-EEEECCCeEEEEECCCCeEEEEEccCCCCEEEEE
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~ 100 (1208)
..+++++.|+.|.+||..+++.+..+..|.. +.+++|+|++..+ ++++.++.|++||..+++....+..+.. +..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5678888999999999999999888876654 6789999999976 5677889999999999988877765544 56789
Q ss_pred EcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCC-eEEEEECCCCccccccCCCcc
Q 000961 101 FHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ-TVRVWDIGALRKKTVSPADDI 178 (1208)
Q Consensus 101 fs~d~~~l~s~-s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg-~V~vwdl~~~~~~~~~~~~~~ 178 (1208)
|+|+++.++++ +.++.|++||+.+++.+..+.. ...+.+++|+|+++++++++.++ .+.+||..+.+...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~------- 151 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD------- 151 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE-------
Confidence 99999977655 5689999999999888877763 34468899999999999988765 46777876533211
Q ss_pred eeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCc-------CCC
Q 000961 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGH-------MNN 250 (1208)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h-------~~~ 250 (1208)
.. ........++|+|+++++++++ .++.|++||+.+++. +..+..+ ...
T Consensus 152 --------------------~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 152 --------------------NV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV--IKKITFEIPGVHPEAVQ 208 (300)
T ss_pred --------------------EE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee--eeeeeecccccccccCC
Confidence 11 1123456789999999886554 689999999998875 2322211 112
Q ss_pred eEEEEEccCCCEEEE-EeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecC
Q 000961 251 VSCVMFHAKQDIIVS-NSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSG 329 (1208)
Q Consensus 251 V~~l~~sp~g~~l~s-gs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~ 329 (1208)
...++|+|+++++++ .+.++.+.+||..+++.+..+. +...+++++|+|+++.|+++..
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~------------------- 268 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG------------------- 268 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC-------------------
Confidence 356889999998654 4556789999999888776553 3457889999999998877642
Q ss_pred CEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcC
Q 000961 330 DSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSP 375 (1208)
Q Consensus 330 ~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 375 (1208)
.++.|.+||+.+++.+..+.+.. .+..++++|
T Consensus 269 ------~~~~i~v~d~~~~~~~~~~~~~~--------~~~~~~~~~ 300 (300)
T TIGR03866 269 ------VSNDVSVIDVAALKVIKSIKVGR--------LPWGVVVRP 300 (300)
T ss_pred ------CCCeEEEEECCCCcEEEEEEccc--------ccceeEeCC
Confidence 36788999999988766655432 556777665
No 126
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.8e-21 Score=190.82 Aligned_cols=247 Identities=20% Similarity=0.349 Sum_probs=209.5
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeE-----EEEecccccCEEEEEEEc----CCCEEEEEE-CCC
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL-----IDRFDEHDGPVRGVHFHK----SQPLFVSGG-DDY 73 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~-----i~~l~~h~~~V~~l~fsp----~~~~Lasgs-~Dg 73 (1208)
+-+.|.+.|.|.+|||+|.+|++|+.|.+|++.-+..... -..|.-|++.|+.++|-. .+.+|++++ .|.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 3456899999999999999999999999999987653322 235678999999999954 345788775 578
Q ss_pred eEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEec--C-----CCCEEEEEEeeC
Q 000961 74 KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG--H-----NHYVMCASFHPK 146 (1208)
Q Consensus 74 ~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~--h-----~~~V~~l~~~p~ 146 (1208)
.|++-|..+|+....+.+|++-|.++ ++-++-.+++|+.|.+|++||++-..++.++.. | ++.|.+++..|.
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 88888999999999999999999887 344577899999999999999998888887742 2 367999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 000961 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (1208)
Q Consensus 147 ~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg 226 (1208)
|++|++|..|....+||+++++.. ..+..|...|.++.|+|...++++++.|.
T Consensus 243 grll~sg~~dssc~lydirg~r~i---------------------------q~f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMI---------------------------QRFHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred cceeeeccCCCceEEEEeeCCcee---------------------------eeeCCCccceeEEEeCCCceEEEEecccc
Confidence 999999999999999999987643 36778999999999999999999999999
Q ss_pred cEEEEECCCCc--eeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 227 QVKLWRMNETK--AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 227 ~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
.|++-|+...- ..++.....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 296 ~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999987643 23355667799999999999999889999999999999753
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=7e-22 Score=222.92 Aligned_cols=283 Identities=25% Similarity=0.388 Sum_probs=233.5
Q ss_pred CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE--EEccCCCCEEE-EEEcC-CCCEEEEEECCCc
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF--TLLGHLDYIRT-VQFHH-EYPWIVSASDDQT 116 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~--~l~~h~~~I~~-v~fs~-d~~~l~s~s~Dg~ 116 (1208)
-++.+.+.+|+..|+.+++.+.. .++++|.||++++|+-..++.+. .+.+|.+.|.. +++-+ ++-.+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 35667889999999999876554 89999999999999976665543 46778887777 88876 4446999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceE
Q 000961 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1208)
Q Consensus 117 I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1208)
|.+|...+..++.++.+|.+.|.|+....++. +++||.|.++++|-+.. +
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-----------------------------l 132 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-----------------------------L 132 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-----------------------------h
Confidence 99999999999999999999999999887776 99999999999998765 3
Q ss_pred EEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000961 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 197 ~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd 276 (1208)
...+.+|+..|+++..-|++ .+++|+.|.+|++|.- ++. +.++.+|...|+.+++-+++ .+++++.||.|+.|+
T Consensus 133 ~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~--l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~ 206 (745)
T KOG0301|consen 133 VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL--LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWD 206 (745)
T ss_pred hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch--hhhhccchhheeeeEEecCC-CeEeecCCceEEEEe
Confidence 34688999999999999997 8999999999999986 343 78899999999999999874 488999999999999
Q ss_pred CCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEee
Q 000961 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (1208)
Q Consensus 277 ~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~ 356 (1208)
+ ++..+..+.+|..-+++++..+++..+++++ .|+++++|+.. ...+.+.+
T Consensus 207 ~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g--------------------------EDrtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG--------------------------EDRTLRIWKKD--ECVQVITL 257 (745)
T ss_pred c-cCceeeeeeccceEEEEEEecCCCCeEEEec--------------------------CCceEEEeecC--ceEEEEec
Confidence 8 7899999999999999999777666666665 47788888876 44444444
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
+. . .+.++.+-++|..+ +++ .||.+++|.....
T Consensus 258 Pt--t-----siWsa~~L~NgDIv--vg~-SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 258 PT--T-----SIWSAKVLLNGDIV--VGG-SDGRVRVFTVDKD 290 (745)
T ss_pred Cc--c-----ceEEEEEeeCCCEE--Eec-cCceEEEEEeccc
Confidence 32 2 67788888888843 333 5689999998754
No 128
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=9.3e-21 Score=209.99 Aligned_cols=478 Identities=13% Similarity=0.210 Sum_probs=293.7
Q ss_pred eEeecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeEE------EEecccccCEEEEEEEcCCCEEEEEECCCeE
Q 000961 3 TKFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTLI------DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g~~i------~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1208)
-.+.+|++.|+.+.|+| +..+||+++.|..|+||.+..|... ..+.+.+-.|-|+.|||...-+...+.-|++
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 45789999999999999 5668999999999999998755222 1233445678999999987756666667999
Q ss_pred EEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCC-EEEEEEeeCCCEEEEE
Q 000961 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-SRTCISVLTGHNHY-VMCASFHPKEDLVVSA 153 (1208)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~-s~~~i~~l~~h~~~-V~~l~~~p~~~~l~s~ 153 (1208)
+|||+.+++.+..+.+|.+.|.+..|+.||..+++++.|..|+|||.+ +++.++...+|.+. =..+.|.-+-..|++.
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisT 232 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIST 232 (1012)
T ss_pred EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhc
Confidence 999999999999999999999999999999999999999999999987 56788888888653 2346676554466665
Q ss_pred ECC----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 000961 154 SLD----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQV 228 (1208)
Q Consensus 154 s~D----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I 228 (1208)
+-+ ..|++||.+...... ...--....+|.---|.||.++|+.++ .+.++
T Consensus 233 GF~~~R~reV~~~Dtr~f~~p~-------------------------~tleld~stGvLiPl~DpDt~llfLaGKG~~~l 287 (1012)
T KOG1445|consen 233 GFTTKRIREVRAYDTRKFGAPV-------------------------HTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKL 287 (1012)
T ss_pred ccchhhheeeeeeeccccCCcc-------------------------eeEEeecccceEeeeecCCCceEEEecCCcceE
Confidence 543 568999987632211 111112334566667888887665544 57778
Q ss_pred EEEECCCCceeEEEeec----------------------C--------cCCCeEEE----------EEccCCCEE--EEE
Q 000961 229 KLWRMNETKAWEVDTLR----------------------G--------HMNNVSCV----------MFHAKQDII--VSN 266 (1208)
Q Consensus 229 ~iwd~~~~~~~~~~~l~----------------------~--------h~~~V~~l----------~~sp~g~~l--~sg 266 (1208)
..+.+...+......++ + ..+.|.-+ .||.| ++ -.|
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~D--LfPeT~G 365 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSD--LFPETRG 365 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhh--hCccccC
Confidence 88887765432111110 0 00111100 01110 00 000
Q ss_pred eCCCc-EEEEeCCCCeeEEEee------cC-------------------------------CCCEEEEE-EeCCC-CEEE
Q 000961 267 SEDKS-IRVWDVTKRTGVQTFR------RE-------------------------------HDRFWILA-SHPEM-NLLA 306 (1208)
Q Consensus 267 s~dg~-I~vwd~~~~~~~~~~~------~~-------------------------------~~~i~~la-~sp~~-~~la 306 (1208)
..-+. -.-|=-.+.+.++... .| ...+.++. --|+- ..-+
T Consensus 366 ~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpa 445 (1012)
T KOG1445|consen 366 AEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPA 445 (1012)
T ss_pred CccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCC
Confidence 00000 0001000001110000 00 00000000 00000 0000
Q ss_pred E-------------------------------EECC--------CeeeEee-----C-----------------CCcc--
Q 000961 307 A-------------------------------GHDS--------GMIVFKL-----E-----------------RERP-- 323 (1208)
Q Consensus 307 ~-------------------------------g~~~--------gi~v~~l-----~-----------------~~~~-- 323 (1208)
+ |..+ .+.+.+- . .+++
T Consensus 446 V~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~ 525 (1012)
T KOG1445|consen 446 VPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPV 525 (1012)
T ss_pred cCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCc
Confidence 0 0000 0000000 0 0000
Q ss_pred ------------------------------------------------------------eEEecCCEEEEE---eCCeE
Q 000961 324 ------------------------------------------------------------AFAVSGDSLFYA---KDRFL 340 (1208)
Q Consensus 324 ------------------------------------------------------------~~s~~~~~L~~~---~d~~i 340 (1208)
-|..+..++++- ..|.|
T Consensus 526 ~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~i 605 (1012)
T KOG1445|consen 526 NFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVI 605 (1012)
T ss_pred ccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceE
Confidence 111122233332 57888
Q ss_pred EEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCC-CEEEEEEecCCCEEEEEEccCCCCCCCc----ccccccCCce
Q 000961 341 RYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTE-NAVLICSDVDGGSYELYVIPKDSIGRGD----SVQDAKKGLG 415 (1208)
Q Consensus 341 ~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~llv~~~~~~g~v~l~~l~~~~~~~~~----~~~~~~~~~i 415 (1208)
-+|+++..-.++--.+...-. -..|+.+.|.|-. ..++|+ .++|.|++|.+..+...+.. ..+..|...|
T Consensus 606 ai~el~~PGrLPDgv~p~l~N---gt~vtDl~WdPFD~~rLAVa--~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 606 AIYELNEPGRLPDGVMPGLFN---GTLVTDLHWDPFDDERLAVA--TDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred EEEEcCCCCCCCccccccccc---CceeeecccCCCChHHeeec--ccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 888887733322222222111 1278999999844 456553 36899999999877554332 2467889999
Q ss_pred EEEEEEeCC-cEEEEEcCCCEEEEEecC-CceeeeecCCc-ceEEEEEeCCccEEEE--eCCeEEEEEcCCCe-EEEEEe
Q 000961 416 GSAIFIARN-RFAVLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCR--AEDRVVIFDLQQRL-VLGDLQ 489 (1208)
Q Consensus 416 ~~~~fs~d~-~~l~~~~~dg~I~Iwdl~-~~~~~~l~~~~-~v~~i~~s~dg~~Las--~dg~v~lwdl~~~~-~l~~~~ 489 (1208)
+++.|+|=- ..|++++.|-+|++||+. .....++.+|. .|.+++|||+|+.+++ .||+|++|...+++ .+.+-.
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC
Confidence 999999854 678888889999999999 45566777777 9999999999999976 59999999987764 344333
Q ss_pred C---CCeeEEEECCCCCEEEEEeCCe
Q 000961 490 T---PFVKYVVWSNDMESVALLSKHA 512 (1208)
Q Consensus 490 ~---~~v~~v~ws~dg~~la~~s~~~ 512 (1208)
. ..--.|.|..||.++++.+-+.
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEecccc
Confidence 3 3446789999999888765443
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=2.2e-22 Score=217.84 Aligned_cols=272 Identities=15% Similarity=0.284 Sum_probs=231.7
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC---eEEEEec--ccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g---~~i~~l~--~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
.|..-|.++++|...+++.+|+ .|.|+|||+... ..+..+. ....-|+++.++|||+.|++||.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5888899999999999999997 677999998543 2333332 345679999999999999999999999999997
Q ss_pred CCeE--EEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 82 MHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 82 ~~~~--~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
.... ...+....-....++.+||.+..+++..||.|.|||+.+...++.+++|.+.+.|+..+++|..|.+|+.|.+|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 5433 33344344567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
|.||++.+++... ......|.++.++|++.++++|-.++.+.+.......
T Consensus 576 RcWDlregrqlqq----------------------------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-- 625 (705)
T KOG0639|consen 576 RCWDLREGRQLQQ----------------------------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-- 625 (705)
T ss_pred eehhhhhhhhhhh----------------------------hhhhhhheecccCCCccceeeecccCcEEEEecCCcc--
Confidence 9999998765431 1234678999999999999999999999988877766
Q ss_pred EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECC
Q 000961 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS 311 (1208)
Q Consensus 240 ~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~ 311 (1208)
...+..|..-|.++.|.+.|+++++.+.|..+..|.+.-|..+...+ +...|.+..+|.|.+++++|+.+
T Consensus 626 -kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 626 -KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred -ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCC
Confidence 56677899999999999999999999999999999988887776654 56779999999999999999864
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=222.00 Aligned_cols=695 Identities=12% Similarity=0.111 Sum_probs=365.3
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE-
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL- 89 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l- 89 (1208)
.+++++|||..-.|+.|..-|.+.+|...+.+.......|..+|..+.||++|..++|+..-|.|.+|.+.....+...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 4678999999999999999999999998777777777789999999999999999999999999999987632221111
Q ss_pred -ccCC--CCEEEEEE-------------------------------------------cCCCCEEEEEECCCcEEEEECC
Q 000961 90 -LGHL--DYIRTVQF-------------------------------------------HHEYPWIVSASDDQTIRIWNWQ 123 (1208)
Q Consensus 90 -~~h~--~~I~~v~f-------------------------------------------s~d~~~l~s~s~Dg~I~iwd~~ 123 (1208)
..|. +.++.++| .|+|..++.++.+|+|+-.| +
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvd-q 219 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVD-Q 219 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEc-C
Confidence 1111 11111111 23445555566666666555 3
Q ss_pred CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCC-CccccccCCCcceeeccc-cccccccccc----eEE
Q 000961 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA-LRKKTVSPADDILRLSQM-NTDLFGGVDA----VVK 197 (1208)
Q Consensus 124 s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~ 197 (1208)
.|++....+..+. ..+-|.+...-+++.-.+-++.++-... +................. +....+...+ ..+
T Consensus 220 ~g~~~~V~k~dS~--vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eK 297 (1416)
T KOG3617|consen 220 NGRQRTVHKLDSE--VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEK 297 (1416)
T ss_pred CCcEEEEEEccch--HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcc
Confidence 4444444332111 2233444333333333333333332211 100000000000000000 0000000111 111
Q ss_pred EEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------ceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC
Q 000961 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET--------KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269 (1208)
Q Consensus 198 ~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~--------~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d 269 (1208)
+-+ .....++|++++..+..+..|...|.+.+|.-... ..|.+...+...+.|+.+.|.|-.+.++..+..
T Consensus 298 yg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~ 376 (1416)
T KOG3617|consen 298 YGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEE 376 (1416)
T ss_pred hhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhh
Confidence 111 13467999999999999999999999999964332 234455555667889999999977777766654
Q ss_pred CcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCc
Q 000961 270 KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1208)
Q Consensus 270 g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~ 349 (1208)
..+.+=. + .. ...|....+.+.-+.+.-.|..+..+.....+++-....+......|++...++|..|++.+..
T Consensus 377 ~v~ll~E-~--~l---~~~h~~~~~A~q~ss~S~~L~hc~sGv~~~l~~~~~~~gi~l~e~~lvvwNgr~v~~y~lq~SG 450 (1416)
T KOG3617|consen 377 DVVLLGE-N--SL---TVKHRGKMAAIQTSSNSFTLLHCTSGVSQDLKLSIPSAGICLGEKQLVVWNGRTVVTYDLQTSG 450 (1416)
T ss_pred heeeecc-C--ch---HHHHhhhhHHhhhcCCceEEEeeccchhhhhhhccchhhheeccceEEEEcCceEEEEEecccc
Confidence 4322211 1 00 0112222222222222221222211111112222222233344445555578888888886532
Q ss_pred ceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEE
Q 000961 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL 429 (1208)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~ 429 (1208)
...+........ ...+++... ..+. |-++ ..|.++.+.+.....+ .+....+.+..+..+ |.+++.
T Consensus 451 ~la~~~~~tF~c-----et~~la~~n--qN~y-cies--~~Vfvrt~qGtv~q~i--~~seiEg~~~~ldi~--g~~l~v 516 (1416)
T KOG3617|consen 451 SLATIQCTTFSC-----ETTSLAIVN--QNLY-CIES--DKVFVRTLQGTVRQEI--SLSEIEGVVVLLDIM--GELLIV 516 (1416)
T ss_pred hhHHHhhhhhcc-----ccchHhHhh--cceE-Eecc--CcEEEEecchhhhhhc--cchhccCceehhhhc--cceeEE
Confidence 222222221111 222233322 2222 2222 3466666654322111 223333434333333 557777
Q ss_pred EcCCCEEEEEecCCceeeeec----------CCcceEEEEEeCCccEEE---E-e----CCeEEEEEcCCCeEEE--EEe
Q 000961 430 DKSSNQVLVKNLKNEVVKKSI----------LPIAADAIFYAGTGNLLC---R-A----EDRVVIFDLQQRLVLG--DLQ 489 (1208)
Q Consensus 430 ~~~dg~I~Iwdl~~~~~~~l~----------~~~~v~~i~~s~dg~~La---s-~----dg~v~lwdl~~~~~l~--~~~ 489 (1208)
....+.++-+|+.....+.+. ....+..+..+..|.-+. + . -.++.+||.++++... .+.
T Consensus 517 ~t~~~~~k~~dvsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE 596 (1416)
T KOG3617|consen 517 QTVSTVAKRLDVSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLE 596 (1416)
T ss_pred eehHHHHHHhhhhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccC
Confidence 665555566666532222111 111344555555444331 1 2 2789999998875321 111
Q ss_pred C----------CCeeEEEECCCCCEEEEEeCCeEEEEecCccceeeeecceeeeeeEEecCCeEEEecCCeeeeEecCCc
Q 000961 490 T----------PFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGD 559 (1208)
Q Consensus 490 ~----------~~v~~v~ws~dg~~la~~s~~~i~i~~~~~~~~~~~~e~~~iks~~wd~~~~~iy~t~~~i~y~l~~g~ 559 (1208)
. +....+.|..+..++.+..- +.+.-..+.+..+.... -+..+.+++.+- +...+
T Consensus 597 ~ETNakkEs~ts~pvr~fWD~~epRllv~E~--~~~~p~s~pQ~ns~QPs------~~~qskVvvLt~-------F~see 661 (1416)
T KOG3617|consen 597 PETNAKKESSTSPPVRFFWDENEPRLLVVEC--IHVEPESTPQRNSLQPS------HFVQSKVVVLTA-------FVSEE 661 (1416)
T ss_pred ccccccccccCCCCceeeecCCCCcEEEEEe--eecccccCcccccCCCc------cccccceEEEee-------ecccc
Confidence 1 23345778776554433211 11111111221111110 111223333221 23334
Q ss_pred eeEEEecccc-----EEEEEEeCCEEEEEecCCceEEEEcChhhHHHHHhhcccccccchHHHHHHHhCCChhhhhcccc
Q 000961 560 SGIIRTLDVP-----IYITKVSGNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVK 634 (1208)
Q Consensus 560 ~g~i~~l~~~-----~~l~~~~~~~l~~l~r~~~~~~~~ld~~e~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~ 634 (1208)
.|+.-....+ -.++++.-+..|++...+-.+.-..+. +.|.. .++.+.+-.|+.- |..-.-..
T Consensus 662 hG~ll~~~~q~~~~~~~Ll~~~VPn~yfvRk~~~d~ed~~ee-------~~i~~-~~~~~pLrdFvgl----e~Cd~~TR 729 (1416)
T KOG3617|consen 662 HGILLQGMQQKNLHCGKLLSVSVPNFYFVRKSGWDEEDNREE-------RTIGK-TLVAKPLRDFVGL----ENCDESTR 729 (1416)
T ss_pred cceeeeecccCCCCccceeeeecCceEEEecccccccccccc-------cccch-hhhhhhHHHhcCc----cccCHHHH
Confidence 4443333221 134455545555553332211111110 00000 0001111222100 00000011
Q ss_pred CcchhhHHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHH
Q 000961 635 DERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIA 714 (1208)
Q Consensus 635 ~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~ 714 (1208)
+.-..|++.+..|++|.|+...+.+++..+|..||.+|.+..++++|..|...+++.+++..|....-|.++.
T Consensus 730 kaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~------- 802 (1416)
T KOG3617|consen 730 KAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED------- 802 (1416)
T ss_pred HhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch-------
Confidence 2223689999999999999999999999999999999999999999999999999999998884333332211
Q ss_pred HHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHH
Q 000961 715 EVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 715 ~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~ 768 (1208)
....+-.|..+|++++|..+|++|.|+++--.++++.|+|++|.+++|.
T Consensus 803 -----eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 803 -----EAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred -----hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhh
Confidence 2223456888999999999999999999999999999999999999986
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.8e-22 Score=211.46 Aligned_cols=286 Identities=16% Similarity=0.309 Sum_probs=231.1
Q ss_pred EEEecccccCEEEEEEEcCC-CEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000961 44 IDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1208)
+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+..++.++..|.+.|+.+++.. ..++++++|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45668999999999999988 6899999999999999999999999999999999999987 57999999999999997
Q ss_pred CCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 123 ~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
.. .++.++-+ .+.+..+.-+..++.++|++. .|.|||..-..... .+.-
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~---------------------------smsw 185 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVS---------------------------SMSW 185 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccc---------------------------eeec
Confidence 65 35666654 345667777777788888874 69999986533221 3444
Q ss_pred cCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-
Q 000961 203 HDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR- 280 (1208)
Q Consensus 203 h~~~V~~l~~sp~g-~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~- 280 (1208)
....|.++.|+|.. ..|+++++|+.|.+||++.........+ ...-..++|+|.+-.++++++|..++.||++..
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee---eccccceecCccccceeeccccccceehhhhhhc
Confidence 56678999999965 4677777999999999999886322222 233457899998888999999999999999864
Q ss_pred eeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCC
Q 000961 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1208)
Q Consensus 281 ~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1208)
+++..+..|.+.+.++.|||.|+-+++|+ .|++|++|....+....+...++.
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~Efvsgs--------------------------yDksIRIf~~~~~~SRdiYhtkRM- 315 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGS--------------------------YDKSIRIFPVNHGHSRDIYHTKRM- 315 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhcccc--------------------------ccceEEEeecCCCcchhhhhHhhh-
Confidence 55677888889999999999999999998 588999999988776555444432
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
. .|.++.||.|.+++ .+|++++.+++|.....
T Consensus 316 --q---~V~~Vk~S~Dskyi--~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 316 --Q---HVFCVKYSMDSKYI--ISGSDDGNVRLWKAKAS 347 (433)
T ss_pred --h---eeeEEEEeccccEE--EecCCCcceeeeecchh
Confidence 1 78999999999976 45778999999986543
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=210.19 Aligned_cols=291 Identities=15% Similarity=0.263 Sum_probs=234.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEECCC--CeEEEEEecCCCCEEEEEEeeCCC-EEEEEECCCeEEEEECCCCcc
Q 000961 93 LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS--RTCISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRK 169 (1208)
Q Consensus 93 ~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s--~~~i~~l~~h~~~V~~l~~~p~~~-~l~s~s~Dg~V~vwdl~~~~~ 169 (1208)
.+.|++|.|||..+.+++++.|++++||.+.. ...++.+.-...+|.++.|+|+|. .+++++....+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998763 445666666778999999999997 899999999999999987665
Q ss_pred ccccCCCcceeeccccccccccccceEEEEEecc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcC
Q 000961 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248 (1208)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~ 248 (1208)
....+ ..++ ...+.....+|++++|+..+..|.|.+....++.. +.++. ..
T Consensus 293 ~k~~~-------------------------~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el--i~s~K-ie 344 (514)
T KOG2055|consen 293 TKLKP-------------------------PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL--ITSFK-IE 344 (514)
T ss_pred ccccC-------------------------CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh--hheee-ec
Confidence 44322 1122 34567788999999999999999999999988875 33333 45
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCC-CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEe
Q 000961 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (1208)
Q Consensus 249 ~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~ 327 (1208)
+.|+.++|+.+++.|++++.+|.|.+||+....++..+....+ .-++++.++++.++|+|++.|+
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-------------- 410 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-------------- 410 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce--------------
Confidence 7899999999999999999999999999999999988875543 2467888899999999998665
Q ss_pred cCCEEEEEeCCeEEEEEccC----CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCC
Q 000961 328 SGDSLFYAKDRFLRYYEFST----QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (1208)
Q Consensus 328 ~~~~L~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~ 403 (1208)
|-+||..+ ..+.++..+... ...|+++.|+||.+.+++++......+++..++.-..-.
T Consensus 411 ------------VNIYd~~s~~~s~~PkPik~~dNL-----tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 411 ------------VNIYDGNSCFASTNPKPIKTVDNL-----TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred ------------EEEeccchhhccCCCCchhhhhhh-----heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeec
Confidence 45666443 444455555432 338999999999999999998888899999988754433
Q ss_pred CcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC
Q 000961 404 GDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1208)
Q Consensus 404 ~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1208)
...+....-+.++|++|||.+-+++.|..+|.+.+|.+.
T Consensus 474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 332345556789999999999999999999999999864
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.1e-21 Score=197.88 Aligned_cols=291 Identities=18% Similarity=0.245 Sum_probs=221.6
Q ss_pred ecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCCe----------EEE-----EecccccCEEEEEEEc-CCCEEEE
Q 000961 6 ETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGT----------LID-----RFDEHDGPVRGVHFHK-SQPLFVS 68 (1208)
Q Consensus 6 ~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g~----------~i~-----~l~~h~~~V~~l~fsp-~~~~Las 68 (1208)
..|.+.|+++...+ .|+++++|+.||.|.|||++... .+. .-.+|.-.|..+.|-| |...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999998 78999999999999999987542 111 1136888999999998 5568999
Q ss_pred EECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCC---CEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee
Q 000961 69 GGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY---PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP 145 (1208)
Q Consensus 69 gs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~---~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p 145 (1208)
++.|.+++|||..+-+....++ ..+.|.+-++||-. .++++|..|-.|++.|+.+|.+..++.||.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999988877776 56778888888843 4888999999999999999999999999999999999999
Q ss_pred CCC-EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 146 KED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 146 ~~~-~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
... .|++|+.||.|++||++...-. ...+...+. ........-..|.+.|+.++|..++.++++++.
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgc-------f~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGC-------FRVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccce-------eEEeecccC-----ccCccccccccccceeeeeeecccchhhhhccC
Confidence 875 5678999999999999763110 000111110 000111145678999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEeec-CcCCCeEEEEE---ccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeC
Q 000961 225 DRQVKLWRMNETKAWEVDTLR-GHMNNVSCVMF---HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~~---sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp 300 (1208)
|..+++|++..+.......-+ .|.. -.+..+ +-+...++---.++.+.++++-.+..+..+..|..++.+.++.|
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~~~~n~-~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~ 345 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGPIIHNQ-TTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP 345 (397)
T ss_pred ccceEEeecccCcccccccccccccc-cccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC
Confidence 999999999887652111111 1111 111111 23344455555668899999999999999999988899999999
Q ss_pred CCCEEEEEEC
Q 000961 301 EMNLLAAGHD 310 (1208)
Q Consensus 301 ~~~~la~g~~ 310 (1208)
+-+...+|.-
T Consensus 346 ~fq~~~tg~~ 355 (397)
T KOG4283|consen 346 DFEQCFTGDM 355 (397)
T ss_pred chhhhhcccc
Confidence 8777777763
No 134
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=5.1e-21 Score=196.53 Aligned_cols=273 Identities=15% Similarity=0.232 Sum_probs=206.5
Q ss_pred ccccCEEEEEEEc-CCCEEEEEECCCeEEEEECCC-CeEE-EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 000961 49 EHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM-HRCL-FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125 (1208)
Q Consensus 49 ~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~-~~~~-~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~ 125 (1208)
..+..|.+++||| ...+++.|+.||+|++|+++. |..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 5677899999999 455666889999999999986 3433 334569999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEEeeCCC--EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc
Q 000961 126 TCISVLTGHNHYVMCASFHPKED--LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (1208)
Q Consensus 126 ~~i~~l~~h~~~V~~l~~~p~~~--~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 203 (1208)
+ +..+..|..+|.++.|-+... .|++||.|.+|+.||.+....... + .-
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t---------------------------~-~L 155 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT---------------------------L-QL 155 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee---------------------------e-ec
Confidence 5 566677999999999988665 899999999999999986443211 1 11
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--e
Q 000961 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR--T 281 (1208)
Q Consensus 204 ~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~--~ 281 (1208)
...+.++.. -.++++++..++.|.+|++.++....-.......-.++|++..++....+.|+-+|.+-+..+..+ +
T Consensus 156 PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 156 PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 233444433 346899999999999999987654212222234456899999999988999999999999998876 3
Q ss_pred eEEEeecCCC---------CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCccee
Q 000961 282 GVQTFRREHD---------RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ 352 (1208)
Q Consensus 282 ~~~~~~~~~~---------~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~ 352 (1208)
.-.+|+.|.. .|.+|+|+|....|++.+ .||++.+||-.....
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG--------------------------sDGtf~FWDkdar~k-- 285 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG--------------------------SDGTFSFWDKDARTK-- 285 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEec--------------------------CCceEEEecchhhhh--
Confidence 3445555542 366789999777777655 467777888765433
Q ss_pred eEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 353 VIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
+...+.. ..+|++.+|+.+|..++.+.+
T Consensus 286 Lk~s~~~-----~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 286 LKTSETH-----PQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred hhccCcC-----CCccceeEecCCCCEEEEEee
Confidence 2222222 339999999999998887766
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.1e-22 Score=214.09 Aligned_cols=237 Identities=22% Similarity=0.375 Sum_probs=202.5
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC-------
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK------- 81 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~------- 81 (1208)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|-.+|+|+.|+-||.+|+|||.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred --CCeEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCC
Q 000961 82 --MHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 82 --~~~~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
+-+++..+..|.-+|+++...+. ..+++|+|.|.++++||+..+..+.++. ....+++++.+|-++.+++|+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence 34678889999999999988765 3599999999999999999999988876 457899999999999999999999
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
.|.+.++.+.. +...+|+. +.++....+
T Consensus 240 ~I~~~~~~~~~---------------------------------~~~~~v~~-------------------k~~~~~~t~ 267 (476)
T KOG0646|consen 240 KIFQNLLFKLS---------------------------------GQSAGVNQ-------------------KGRHEENTQ 267 (476)
T ss_pred eEEeeehhcCC---------------------------------cccccccc-------------------cccccccce
Confidence 99998875421 11122221 122222222
Q ss_pred eeEEEeecCcCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCC
Q 000961 238 AWEVDTLRGHMN--NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 238 ~~~~~~l~~h~~--~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
+..+.+|.+ +|+|++++-||.+|++|+.||.++|||+.+.++++++....++|+.+.+.|-
T Consensus 268 ---~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 268 ---INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ---eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 556777877 9999999999999999999999999999999999988877788888888664
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=208.74 Aligned_cols=283 Identities=15% Similarity=0.280 Sum_probs=229.1
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECC--CCeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYR--MGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRC 85 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~--~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~ 85 (1208)
.++|++|.|||..+.|++++.||+++||.+. ....++.+.--..||.+.+|+|+|. .+++++.....+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999864 3456677767789999999999999 899999999999999988764
Q ss_pred EE--EEccCC-CCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 86 LF--TLLGHL-DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 86 ~~--~l~~h~-~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
.. ...++. ..+.....+|++++|+..+..|.|.+....+++.+.+++ -.+.|..+.|+.+++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 33 334444 367788899999999999999999999999999998887 46789999999999999999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----Cce
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----TKA 238 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~----~~~ 238 (1208)
|++...... ++.-.|. -.-++++.++++.+|++|+..|.|.|||..+ ...
T Consensus 372 nl~~~~~~~-------------------------rf~D~G~-v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 372 NLRQNSCLH-------------------------RFVDDGS-VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred ecCCcceEE-------------------------EEeecCc-cceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 998853321 1111111 1236788889999999999999999999654 233
Q ss_pred eEEEeecCcCCCeEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeeEEEeecCC---CCEEEEEEeCCCCEEEEEECCC-
Q 000961 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSE--DKSIRVWDVTKRTGVQTFRREH---DRFWILASHPEMNLLAAGHDSG- 312 (1208)
Q Consensus 239 ~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~--dg~I~vwd~~~~~~~~~~~~~~---~~i~~la~sp~~~~la~g~~~g- 312 (1208)
.++..+..-...|+++.|+|+.++|+.+|. +..+|+-.+.+.+....+...+ +.++|++|+|.+.++|+|.+.|
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 346667777788999999999999988775 5679999888877766666544 4589999999999999998544
Q ss_pred eeeEee
Q 000961 313 MIVFKL 318 (1208)
Q Consensus 313 i~v~~l 318 (1208)
+.+|++
T Consensus 506 v~l~kL 511 (514)
T KOG2055|consen 506 VHLFKL 511 (514)
T ss_pred eeeEee
Confidence 334443
No 137
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.8e-19 Score=210.07 Aligned_cols=441 Identities=14% Similarity=0.219 Sum_probs=298.5
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC---EEEEEECCCeEEEEECCCCeEEEEEc
Q 000961 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP---LFVSGGDDYKIKVWNYKMHRCLFTLL 90 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~---~Lasgs~Dg~I~vWd~~~~~~~~~l~ 90 (1208)
.-.||+|+++++... +..|.||...+|.++..+.+|..+++.+.+.|... ++.+++.||.|++||...+..+.++.
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 346999999888774 67899999999999999999999999999988655 67799999999999999999999887
Q ss_pred cCCCCEEEEEEcC---CCCEEEEEE-CCCcE-EEEECCCCeE-----EEE--------EecCCCCEEEEEEeeCCCEEEE
Q 000961 91 GHLDYIRTVQFHH---EYPWIVSAS-DDQTI-RIWNWQSRTC-----ISV--------LTGHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 91 ~h~~~I~~v~fs~---d~~~l~s~s-~Dg~I-~iwd~~s~~~-----i~~--------l~~h~~~V~~l~~~p~~~~l~s 152 (1208)
.+. ++..+.+.| +...++..+ .|..+ .-........ +.+ +..|.. -.++.+++.|.+...
T Consensus 100 ~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 100 NNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGI 177 (792)
T ss_pred cCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEE
Confidence 443 344444422 111122111 11111 0000111111 111 112222 356778877765555
Q ss_pred EECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000961 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd 232 (1208)
.. +..+.+|...... +...+ ...-..|...+++.++||+++++++|..||+|.+|+
T Consensus 178 ~~-~~~~~~~~v~~~~-~~~~~----------------------~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 178 VH-MCKIHIYFVPKHT-KHTSS----------------------RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR 233 (792)
T ss_pred EE-eeeEEEEEecccc-eeecc----------------------chhhhhhcccceeEEeccccceEEEeccCCcEEEEe
Confidence 54 5678888876643 11110 112234666689999999999999999999999997
Q ss_pred CCC--CceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEE-E
Q 000961 233 MNE--TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG-H 309 (1208)
Q Consensus 233 ~~~--~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g-~ 309 (1208)
-.. ........+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++ .+-+.+-..+|..+.++||+.+.+.. .
T Consensus 234 d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 234 DFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEec
Confidence 654 3333467788899999999999999999999999999999999988 55677788999999999999987765 4
Q ss_pred CCCeeeEeeCCCc------------------c-----eEEec--CCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCC-
Q 000961 310 DSGMIVFKLERER------------------P-----AFAVS--GDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGST- 362 (1208)
Q Consensus 310 ~~gi~v~~l~~~~------------------~-----~~s~~--~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~- 362 (1208)
|+.+.+.+...-. + .++.+ .+.+++. ..+.|++||+.+...+..+.+-.....
T Consensus 313 DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~ 392 (792)
T KOG1963|consen 313 DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD 392 (792)
T ss_pred CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccC
Confidence 5556655442110 0 22333 3455555 899999999998766544433221110
Q ss_pred ---CCCcCCeEEEEcCCCCEEEEEEec------CC--CEEEEEEccCCCCCCCcc--cccccCCceEEEEEEeCC--cEE
Q 000961 363 ---SLNQSPRTLSYSPTENAVLICSDV------DG--GSYELYVIPKDSIGRGDS--VQDAKKGLGGSAIFIARN--RFA 427 (1208)
Q Consensus 363 ---~~~~~i~~l~~spdg~~llv~~~~------~~--g~v~l~~l~~~~~~~~~~--~~~~~~~~i~~~~fs~d~--~~l 427 (1208)
.+...++.++.+..|.+++..... .+ -.+++|..........+. ....|...+...+|.+.. ..+
T Consensus 393 ~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~ 472 (792)
T KOG1963|consen 393 GDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRC 472 (792)
T ss_pred CcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccccee
Confidence 112356777788888877654321 12 356789887665433221 235677766666666433 267
Q ss_pred EEEcCCCEEEEEecCCc----------eeeeec--CCcceEEEEEeCCccEEEEe-CCeEEEEEcCCC
Q 000961 428 VLDKSSNQVLVKNLKNE----------VVKKSI--LPIAADAIFYAGTGNLLCRA-EDRVVIFDLQQR 482 (1208)
Q Consensus 428 ~~~~~dg~I~Iwdl~~~----------~~~~l~--~~~~v~~i~~s~dg~~Las~-dg~v~lwdl~~~ 482 (1208)
++++.||.++||-+.+. ..+.+. ...++...+|+.||++|+.+ ++.|.+||..+.
T Consensus 473 vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 473 VTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred EEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 88888999999998411 111111 12288999999999999764 999999999883
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.8e-23 Score=232.81 Aligned_cols=259 Identities=24% Similarity=0.490 Sum_probs=231.9
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~ 100 (1208)
+..++.+-..-.+++||.+ .+..|...|.++..-..++.+++|+.|-.+-+|.+.....+..+.+|..+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 3444555556667788853 3457888899998878888999999999999999988888888999999999999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCccee
Q 000961 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180 (1208)
Q Consensus 101 fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~ 180 (1208)
|+++...|+.|+.+|+|++||+...+.++++.+|...+.++.|+|-+.+.++|+.|+.+.+||++...
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G------------ 145 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG------------ 145 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999997522
Q ss_pred eccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC
Q 000961 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g 260 (1208)
+.+...+|...|..+.|+|+|+++++|++|..+++||...++. ...+..|.+.+.++.|||..
T Consensus 146 ---------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--~~ef~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 146 ---------------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--SKEFKSHEGKVQSLEFHPLE 208 (825)
T ss_pred ---------------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc--ccccccccccccccccCchh
Confidence 3446777999999999999999999999999999999999997 78899999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCee
Q 000961 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI 314 (1208)
Q Consensus 261 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~ 314 (1208)
-++++|+.|+++++||+++.+.+.........|.+.+|+|++..+.+|....+.
T Consensus 209 ~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 999999999999999999998888888888899999999999999998765544
No 139
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.88 E-value=2.8e-19 Score=195.58 Aligned_cols=227 Identities=15% Similarity=0.211 Sum_probs=168.6
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEE-c-------CCCCEEEEEECCCcEEEE
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQF-H-------HEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~f-s-------~d~~~l~s~s~Dg~I~iw 120 (1208)
-|...|.|+.|+.+...+.+++++..+.-||+.+ .....+.-..+.|....+ - .....++.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4667788999998887666665554444445433 222222222222221111 1 122378888999999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 121 d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
+ .+++....+..|.+.+.|..|+|+|.-|++++.||.|++|.-.+.-.. ++
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS----------------------------tl 141 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS----------------------------TV 141 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH----------------------------HH
Confidence 8 567777888999999999999999999999999999999997653322 33
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
.....+|.|++|.|+.+.++.+. .+.+.|=.+.-... +...+.|.+-|.++.|+|..+++++|++|-..+|||. -|
T Consensus 142 ~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k--~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G 217 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK--IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QG 217 (737)
T ss_pred hhcCceeEEEEECCCCCceEEec-CCeEEEeecccccc--eeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cC
Confidence 34567899999999987766654 34455555554443 6788999999999999999999999999999999995 47
Q ss_pred eeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 281 TGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 281 ~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
..+.+-..|..+|++++|.|+ ..++.|+-
T Consensus 218 ~~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 218 ANLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred cccccCChhccceeeeeeccc-cceeeeee
Confidence 777777888899999999999 66776663
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.5e-23 Score=232.35 Aligned_cols=239 Identities=24% Similarity=0.465 Sum_probs=219.2
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
+++..|+..|.|+..-..++.+++|+.+..+-+|.+..-..+..+.+|..+|.++.|++...+|+.|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 46678999999999977889999999999999999887777788999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
.+.++++.+|...+.++.|+|-+.+.++++.|+.+.+||.+...|...+.+|...|.++.|+|+|.++++++.|.++++|
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~ 242 (1208)
|...++.. ..+.+|.+.+..+.|+|..-++++|+.|++|++||+.+... +.
T Consensus 182 d~~agk~~---------------------------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--I~ 232 (825)
T KOG0267|consen 182 DLTAGKLS---------------------------KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--IS 232 (825)
T ss_pred cccccccc---------------------------cccccccccccccccCchhhhhccCCCCceeeeeccceeEE--ee
Confidence 99775543 25678999999999999999999999999999999998775 66
Q ss_pred eecCcCCCeEEEEEccCCCEEEEEeCCC
Q 000961 243 TLRGHMNNVSCVMFHAKQDIIVSNSEDK 270 (1208)
Q Consensus 243 ~l~~h~~~V~~l~~sp~g~~l~sgs~dg 270 (1208)
........|.+..|+|++..+++|....
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchhh
Confidence 6666788999999999999888887653
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.6e-22 Score=227.71 Aligned_cols=238 Identities=22% Similarity=0.437 Sum_probs=198.6
Q ss_pred EEEEEEeC-CCCEEEEEecCCeEEEEECCC---CeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEE
Q 000961 12 VKGLSFHS-KRPWILASLHSGVIQLWDYRM---GTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 12 V~~lafsp-dg~~Lasg~~dg~I~iWd~~~---g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~ 86 (1208)
+..|.|+. +.++||+++.+|.|.+||+.. .+++..|.+|+..|++++||+..+ +|++|+.||+|++||++..+-.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44567775 568999999999999999976 567778999999999999998765 7889999999999999999999
Q ss_pred EEEccCCCCEEEEEEcCC-CCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEEC
Q 000961 87 FTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 87 ~~l~~h~~~I~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s-~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl 164 (1208)
.++.+....|+.|.|+|. +..++++.+.|.+++||++. .++...+..|.++|.|+.|+|++.+|+||+.|++|+|||.
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 999999999999999995 55889999999999999974 5677788999999999999999999999999999999999
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCE-EEEEe--CCCcEEEEECCCCceeEE
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL-IVSGA--DDRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~-L~sgs--~dg~I~iwd~~~~~~~~~ 241 (1208)
.+.+.... ..-....+|.++.|-|..++ |++++ .|-.|+|||++..-. +.
T Consensus 250 t~~~~~~~--------------------------~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI-P~ 302 (839)
T KOG0269|consen 250 TDSRAKPK--------------------------HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI-PY 302 (839)
T ss_pred cCCCccce--------------------------eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc-cc
Confidence 87554321 11223568999999997664 55554 477899999987653 47
Q ss_pred EeecCcCCCeEEEEEcc-CCCEEEEEeCCCcEEEEe
Q 000961 242 DTLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp-~g~~l~sgs~dg~I~vwd 276 (1208)
.++..|...++.++|.. +...+.+++.||+|..-.
T Consensus 303 ~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 303 ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred eeeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence 78889999999999975 455677888888765443
No 142
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=5.3e-21 Score=207.44 Aligned_cols=234 Identities=23% Similarity=0.427 Sum_probs=190.2
Q ss_pred ccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCC----------eEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCc
Q 000961 49 EHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMH----------RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQT 116 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~----------~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~ 116 (1208)
.|.+.|+.+..-|+.+ ++++++..+.|.|||+.+. ++-.++.+|.+.-..++|++... .+++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5889999999999777 5666788899999998642 12237889999888899998755 8999999999
Q ss_pred EEEEECCCCe-------EEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccc
Q 000961 117 IRIWNWQSRT-------CISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDL 188 (1208)
Q Consensus 117 I~iwd~~s~~-------~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1208)
|++||+.... ....+.+|...|..++|+|.. +++.+++.|+.+.+||+++...+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~------------------ 263 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK------------------ 263 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC------------------
Confidence 9999997432 345678999999999999965 78899999999999999963111
Q ss_pred cccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC-CCEEEEE
Q 000961 189 FGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSN 266 (1208)
Q Consensus 189 ~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~-g~~l~sg 266 (1208)
......+|.+.|+|++|+| ++..||+|+.|++|.+||+++-.. ++.++.+|...|.++.|+|+ ...|+++
T Consensus 264 -------~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 264 -------PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred -------CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEec
Confidence 1235678999999999999 556889999999999999998765 58899999999999999995 4678899
Q ss_pred eCCCcEEEEeCCCCe--------------eEEEeecCCCCEEEEEEeCCCCEEEEE
Q 000961 267 SEDKSIRVWDVTKRT--------------GVQTFRREHDRFWILASHPEMNLLAAG 308 (1208)
Q Consensus 267 s~dg~I~vwd~~~~~--------------~~~~~~~~~~~i~~la~sp~~~~la~g 308 (1208)
+.|+.+.|||+..-. ++..-.+|...|..+.|+|+...++++
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEE
Confidence 999999999987422 234445677788888899887765544
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=9.7e-21 Score=209.82 Aligned_cols=277 Identities=17% Similarity=0.342 Sum_probs=217.7
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC--EEEEEECCC--------
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDY-------- 73 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~--~Lasgs~Dg-------- 73 (1208)
-|.||++.|.||+.+|.|.||++|+.||+|+||.+.+|+++.++. ..+.|+||+|+|.+. .||++-...
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 478999999999999999999999999999999999999999884 566899999999765 454443322
Q ss_pred ------------------------eEEEEECCCC----eEEEEEccCCCCEEEEEEcCCCCEEEEEECC---CcEEEEEC
Q 000961 74 ------------------------KIKVWNYKMH----RCLFTLLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNW 122 (1208)
Q Consensus 74 ------------------------~I~vWd~~~~----~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D---g~I~iwd~ 122 (1208)
.+..|.-... +-+...-.|...|+.+.||..|.+|++...+ ..|.|+++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 2233432210 1122334588899999999999999988664 57889999
Q ss_pred CCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 123 ~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
..+....-+....+.|.++.|+|...++++++ ...|++||+...+... .+..
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvK---------------------------kL~t 605 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVK---------------------------KLLT 605 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHH---------------------------HHhc
Confidence 87776666766678899999999999999888 5789999997744332 2223
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC----
Q 000961 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT---- 278 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~---- 278 (1208)
....|..++.||.|..|+.|+.|+.+..+|+.-... +..+++-|...+++++||+.-.++++|+.||++.|+.-.
T Consensus 606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 456688999999999999999999999999986543 277889999999999999999999999999999998522
Q ss_pred --CC---eeEEEeecCCCC----EEEEEEeCCCCEEEEEEC
Q 000961 279 --KR---TGVQTFRREHDR----FWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 279 --~~---~~~~~~~~~~~~----i~~la~sp~~~~la~g~~ 310 (1208)
.. .++..+++|... |....|||...+|.+++.
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA 725 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA 725 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC
Confidence 11 234455666544 788889999998776653
No 144
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1e-20 Score=205.10 Aligned_cols=294 Identities=14% Similarity=0.235 Sum_probs=228.2
Q ss_pred CCeEEEEECCCCeEEEEeccc-ccCEEEEEEEcCCCEEEEEE-CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000961 30 SGVIQLWDYRMGTLIDRFDEH-DGPVRGVHFHKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1208)
Q Consensus 30 dg~I~iWd~~~g~~i~~l~~h-~~~V~~l~fsp~~~~Lasgs-~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~ 107 (1208)
..++.+||+++|....++++. ...-.++..- .+.+++++. ....|.+|.+...........-.++|.+++-+|+|.+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 356999999999999888754 2222222211 224666664 4468999998765444433345678999999999999
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeecccccc
Q 000961 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 108 l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
++.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.||.+|++|+.||.|.+|++...-...
T Consensus 96 l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~---------------- 159 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD---------------- 159 (476)
T ss_pred EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc----------------
Confidence 9999899999999999999999999999999999999999999999999999999986532111
Q ss_pred ccccccceEEEEEeccCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEE
Q 000961 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPT--LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVS 265 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~s 265 (1208)
...+....+.+..|.-+|+.+...+. ..++++++.|.++++||+..+.. +.++ .....+.+++.+|-+..+.+
T Consensus 160 --~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L--Llti-~fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 160 --NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL--LLTI-TFPSSIKAVALDPAERVVYI 234 (476)
T ss_pred --cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee--eEEE-ecCCcceeEEEcccccEEEe
Confidence 01133456688899999999988765 45899999999999999999986 3332 24568999999999999999
Q ss_pred EeCCCcEEEEeCCCC----------------eeEEEeecCCC--CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEe
Q 000961 266 NSEDKSIRVWDVTKR----------------TGVQTFRREHD--RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (1208)
Q Consensus 266 gs~dg~I~vwd~~~~----------------~~~~~~~~~~~--~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~ 327 (1208)
|+++|.|.+.++.+. ..+..+.+|.+ .|++++.+-||.+|++|+
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd------------------ 296 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD------------------ 296 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC------------------
Confidence 999999998876532 23444566766 799999999999999988
Q ss_pred cCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCC
Q 000961 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTEN 378 (1208)
Q Consensus 328 ~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 378 (1208)
.||.+.+||+.+.+.+..+... .++|+.+.+.|-.+
T Consensus 297 --------~dg~VcvWdi~S~Q~iRtl~~~-------kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 297 --------EDGKVCVWDIYSKQCIRTLQTS-------KGPVTNLQINPLER 332 (476)
T ss_pred --------CCCCEEEEecchHHHHHHHhhh-------ccccceeEeecccc
Confidence 5888999999998776655421 23888888877544
No 145
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=6.5e-20 Score=189.58 Aligned_cols=270 Identities=17% Similarity=0.220 Sum_probs=212.6
Q ss_pred cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 000961 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1208)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1208)
....|+.|.|+|.+..|++++.||++++|+.........+. |..++.+++|.++. .+++|+.||.|+.+|+.+++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee
Confidence 46779999999999999999999999999998876555555 99999999999854 69999999999999999887644
Q ss_pred EEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEE
Q 000961 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1208)
Q Consensus 130 ~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 209 (1208)
+..|...|.|+.+++....+++|+.|++|++||.+...... .+ .....|.+
T Consensus 90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~---------------------------~~-d~~kkVy~ 140 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG---------------------------TF-DQGKKVYC 140 (323)
T ss_pred -eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---------------------------cc-ccCceEEE
Confidence 45599999999999988999999999999999998622111 11 12236766
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEE
Q 000961 210 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQT 285 (1208)
Q Consensus 210 l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~----~~~~~ 285 (1208)
+..+ |+.|++|+.+..|.+||+++........-..-...++|+++-|++.=+++++-||.|.+=.+... .....
T Consensus 141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 6654 56899999999999999998765333333445567899999998888999999999988766655 33334
Q ss_pred eecCC---------CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEee
Q 000961 286 FRREH---------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (1208)
Q Consensus 286 ~~~~~---------~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~ 356 (1208)
|+.|. -+|.+++|||-...+++|+. ||.|.+||+.+.+.+.. +
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs--------------------------DG~V~~Wd~~~rKrl~q--~ 270 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS--------------------------DGIVNIWDLFNRKRLKQ--L 270 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCC--------------------------CceEEEccCcchhhhhh--c
Confidence 55443 25889999999889999884 66778999988766433 3
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 357 RRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
.+. ...|.+++|+.||..|++++.
T Consensus 271 ~~~-----~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 271 AKY-----ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cCC-----CCceEEEEeccCCCeEEEEec
Confidence 322 227999999999999988766
No 146
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=5.7e-18 Score=201.32 Aligned_cols=374 Identities=24% Similarity=0.455 Sum_probs=287.4
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe-EEEEecccc-cCEEEEEE-EcCCC-EEEEEEC-CCeEEEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT-LIDRFDEHD-GPVRGVHF-HKSQP-LFVSGGD-DYKIKVW 78 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~-~i~~l~~h~-~~V~~l~f-sp~~~-~Lasgs~-Dg~I~vW 78 (1208)
.+..|...|.++.|++.+..++.++.++.+.+|+...+. .+..+..+. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 467899999999999999999999999999999998886 677776644 37888888 78887 5555444 9999999
Q ss_pred ECCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCC-EEEEEEC
Q 000961 79 NYKM-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASL 155 (1208)
Q Consensus 79 d~~~-~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~-~l~s~s~ 155 (1208)
+... ......+..|...|..+.|+|++..+++++. |+.+++|+...+..+..+.+|...|.++.|+|++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 7888889999999999999999998888885 99999999999899999999999999999999987 5555599
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~ 235 (1208)
|+.|++||....... ...+.+|.... ...|+|++..+++++.|+.+++|+...
T Consensus 220 d~~i~~wd~~~~~~~--------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 220 DGTIRLWDLSTGKLL--------------------------RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred CCcEEEEECCCCcEE--------------------------eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence 999999987632211 11456676665 448999998999999999999999987
Q ss_pred CceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee--cCCCCEEEEEEeCCCCEEEEEECCCe
Q 000961 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR--REHDRFWILASHPEMNLLAAGHDSGM 313 (1208)
Q Consensus 236 ~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~--~~~~~i~~la~sp~~~~la~g~~~gi 313 (1208)
... ......+|...+.++.|+|++..+++++.|+.+.+||..+........ .+...+..+.+.+++..+..+..
T Consensus 273 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 348 (466)
T COG2319 273 SSS-LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--- 348 (466)
T ss_pred CCc-EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec---
Confidence 664 123336788999999999988989889999999999998887766655 55556888888323234444421
Q ss_pred eeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEE
Q 000961 314 IVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYEL 393 (1208)
Q Consensus 314 ~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l 393 (1208)
.++.+.+|+..... ....... ...+..+.+++ . .........++.+.+
T Consensus 349 ----------------------~d~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 396 (466)
T COG2319 349 ----------------------DDGTIRLWDLRTGK--PLKTLEG------HSNVLSVSFSP-D-GRVVSSGSTDGTVRL 396 (466)
T ss_pred ----------------------CCCcEEeeecCCCc--eeEEecC------CceEEEEEECC-C-CCEEEEecCCCceEE
Confidence 34566677777655 1111111 11367888888 6 444443557789999
Q ss_pred EEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC
Q 000961 394 YVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (1208)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~ 443 (1208)
|+.......... ..+...+....+++++..++.+..++.+.+|+...
T Consensus 397 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 397 WDLSTGSLLRNL---DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EecccCeeeeec---cCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 998865432111 11116778888888998888877788999998876
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=3.5e-19 Score=202.74 Aligned_cols=268 Identities=12% Similarity=0.134 Sum_probs=200.2
Q ss_pred ceEeecCCCCEEEEEEeCCCCEE-EEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEE-ECCCeEEEEE
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWI-LASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWN 79 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~L-asg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd 79 (1208)
+..+.+|. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.|++||
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 34566554 47789999999977 5566789999999999988887765544 5678999999977554 5689999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC-cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEE-ECCC
Q 000961 80 YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ-TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA-SLDQ 157 (1208)
Q Consensus 80 ~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg-~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~-s~Dg 157 (1208)
+.+++.+..+.. ...+.+++|+|++.++++++.++ .+.+||..+++....... ...+.++.|+|+++.++++ ..++
T Consensus 102 ~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~ 179 (300)
T TIGR03866 102 IETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGG 179 (300)
T ss_pred CCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCC
Confidence 999888877753 33468899999999999988775 567789988887665543 3456789999999888655 4699
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE-ecc--CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEC
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL-EGH--DRGVNWAAFHPTLPLIVSG-ADDRQVKLWRM 233 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h--~~~V~~l~~sp~g~~L~sg-s~dg~I~iwd~ 233 (1208)
.|++||+.+.+...... ... ..+ ......++|+|+++.++++ +.++.+.+||.
T Consensus 180 ~v~i~d~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 180 TVSVIDVATRKVIKKIT-----------------------FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred EEEEEEcCcceeeeeee-----------------------ecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999998754321100 000 001 1123468899999986554 55678999999
Q ss_pred CCCceeEEEeecCcCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeC
Q 000961 234 NETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN-SEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 234 ~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sg-s~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp 300 (1208)
.+.+. .... .+...+.+++|+|+|++|+++ +.+|.|++||+.+++.+..+... ...+.++++|
T Consensus 237 ~~~~~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 237 KTYEV--LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcE--EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 88775 3222 244578999999999999886 46899999999999999988754 5558888765
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=8.4e-20 Score=188.08 Aligned_cols=278 Identities=12% Similarity=0.221 Sum_probs=211.2
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEcc
Q 000961 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~ 91 (1208)
..|+.||+.|.+||+|+.||.|.|||+.|...-+.+.+|..||++++||++|+.|+|++.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999999998887
Q ss_pred CCCCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCeEEEEEe-c----CCCCEEEEEEeeCCCEEEEEECCCeEEEEECC
Q 000961 92 HLDYIRTVQFHHEYPWI-VSASDDQTIRIWNWQSRTCISVLT-G----HNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 92 h~~~I~~v~fs~d~~~l-~s~s~Dg~I~iwd~~s~~~i~~l~-~----h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
...+|....|+|..... +..-.+..-.+-++..+... .+. . .+..-.+..|++.|+++++|...|.+.++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 67899999999965433 22223333444444432211 111 0 11122344689999999999999999999998
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEecc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eE
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA----WE 240 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~----~~ 240 (1208)
+.+... .+.-. ...|..+.++-.|+.|++-+.|+.|+.|++..-.. .+
T Consensus 184 t~e~va---------------------------s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 184 TLECVA---------------------------SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred hheeee---------------------------eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 865432 11112 36788899999999999999999999999873211 00
Q ss_pred E---EeecC--cCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeeEEEeecCC-CCEEEEEEeCCCCEEEEEECCCe
Q 000961 241 V---DTLRG--HMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTGVQTFRREH-DRFWILASHPEMNLLAAGHDSGM 313 (1208)
Q Consensus 241 ~---~~l~~--h~~~V~~l~~sp~g~~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~-~~i~~la~sp~~~~la~g~~~gi 313 (1208)
+ +.+.. ..-.=.+++|+.+|.+++.++. -..++||....|..++.+.+.. .....+.|+|-...+++-..+.+
T Consensus 237 ~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v 316 (405)
T KOG1273|consen 237 VEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVV 316 (405)
T ss_pred cChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCce
Confidence 1 11111 1112347899999999988764 4569999999999999998877 45778999999888887765555
Q ss_pred eeEee
Q 000961 314 IVFKL 318 (1208)
Q Consensus 314 ~v~~l 318 (1208)
.+|..
T Consensus 317 ~iw~~ 321 (405)
T KOG1273|consen 317 YIWAV 321 (405)
T ss_pred EEEEe
Confidence 55544
No 149
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.9e-20 Score=190.53 Aligned_cols=285 Identities=13% Similarity=0.264 Sum_probs=211.6
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEec
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~ 133 (1208)
-.|+.|++.|.+||+|+.||.|.|||+.|...-..+.+|..+|++++||+||+.|+++|.|..|.+||+..|.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999888999999999999999999999999999999999999999998887
Q ss_pred CCCCEEEEEEeeCCC-EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEE
Q 000961 134 HNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212 (1208)
Q Consensus 134 h~~~V~~l~~~p~~~-~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 212 (1208)
.+++|+.+.|+|... .+++.-.+..-.+-++....... .+. ..++. .+..-.+..|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~---------------d~d~d-------ln~sas~~~f 161 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPK---------------DDDGD-------LNSSASHGVF 161 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccC---------------CCccc-------cccccccccc
Confidence 578999999999763 33333333334444444321111 000 00000 0011122368
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-------ee--
Q 000961 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM-NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR-------TG-- 282 (1208)
Q Consensus 213 sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~-~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~-------~~-- 282 (1208)
++.|+++++|...|.+.+++..+.++ +..++-.. ..|.++.++..|+.|+..+.|..||.|++..- ++
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~--vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~ 239 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLEC--VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEP 239 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchhee--eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcCh
Confidence 89999999999999999999999887 66666555 78999999999999999999999999997621 11
Q ss_pred EEEeec--CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCC
Q 000961 283 VQTFRR--EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1208)
Q Consensus 283 ~~~~~~--~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1208)
.+.+.. ..-.-.+++|+.+|.++.+|+. +...+++|.-..|..+.++.-.+ |
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~-------------------------~aHaLYIWE~~~GsLVKILhG~k-g 293 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSA-------------------------RAHALYIWEKSIGSLVKILHGTK-G 293 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEeccc-------------------------cceeEEEEecCCcceeeeecCCc-h
Confidence 111110 1122456888999999888873 45678899988888776654322 1
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
.....+.|.|-...++.. ..|.+.+|....
T Consensus 294 -----E~l~DV~whp~rp~i~si---~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 294 -----EELLDVNWHPVRPIIASI---ASGVVYIWAVVQ 323 (405)
T ss_pred -----hheeecccccceeeeeec---cCCceEEEEeec
Confidence 145667888876655443 448999998654
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=4e-20 Score=206.77 Aligned_cols=298 Identities=16% Similarity=0.240 Sum_probs=220.0
Q ss_pred cCCCCEEE--EEEeC---CCCEEEEEecCCeEEEEECCCCeE------EEEecccccCEEEEEEEcCCCEEEEEECCCeE
Q 000961 7 TKSNRVKG--LSFHS---KRPWILASLHSGVIQLWDYRMGTL------IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1208)
Q Consensus 7 ~h~~~V~~--lafsp---dg~~Lasg~~dg~I~iWd~~~g~~------i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1208)
.|.-++.- ..|++ ....|+.+..+|.|.++|.+.... +..+..|...|..+.|-|....|++++.|.++
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence 34444444 56765 456889999999999999765432 24455799999999999977799999999999
Q ss_pred EEEECCCCeEEEE--EccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCe--------------------------
Q 000961 76 KVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT-------------------------- 126 (1208)
Q Consensus 76 ~vWd~~~~~~~~~--l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~-------------------------- 126 (1208)
++||+++.++... +.||...|.+++|++..+ .+++|+.||.|.|||++-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999876 77899999999999986321
Q ss_pred -EEEEEecCCCCEEE---EEEeeCCCEEEEEEC-CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 127 -CISVLTGHNHYVMC---ASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 127 -~i~~l~~h~~~V~~---l~~~p~~~~l~s~s~-Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
.+.....+...|.+ +.+..|...|++++. |+.|+|||++.............. ... .-.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~--------------~~~--t~s 268 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD--------------KYP--THS 268 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc--------------Ccc--Ccc
Confidence 11112234444444 555668889999888 999999999886543221110000 000 001
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCe--EEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV--SCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 202 ~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V--~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
....++.++.....|.+|.+.+.|+.|++|++.+....++..+.++...- ..-..+|++.++++|+.|....+|.+.+
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 22457888899999999999999999999999987755555555544321 2235689999999999999999999987
Q ss_pred Cee-EEEeecCCCCEEEEEEeC--CCCEEEEEECCCeeeEeeCC
Q 000961 280 RTG-VQTFRREHDRFWILASHP--EMNLLAAGHDSGMIVFKLER 320 (1208)
Q Consensus 280 ~~~-~~~~~~~~~~i~~la~sp--~~~~la~g~~~gi~v~~l~~ 320 (1208)
.+. ...+.+|.-.|++++|.| ....+.+..|.++.+|.+..
T Consensus 349 ~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 349 PEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 654 344567888899999987 45666676677888888854
No 151
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=9.6e-21 Score=216.18 Aligned_cols=262 Identities=20% Similarity=0.354 Sum_probs=209.1
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCC----eEEEEeccc---ccCEEEEEEEc-CCCEEEEEECCCeEEEEECCC
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEH---DGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g----~~i~~l~~h---~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
...+|+.+++...+++++ ...+.|+.+... ++...++.. .-.+..|.|+. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 356677789888888886 445777765432 222222211 12345677864 467999999999999999986
Q ss_pred ---CeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeC-CCEEEEEECCC
Q 000961 83 ---HRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK-EDLVVSASLDQ 157 (1208)
Q Consensus 83 ---~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~-~~~l~s~s~Dg 157 (1208)
.+.+..+..|...+.++.||+..+ +|++||.||+|++||++..+...++.+....|..+.|+|. ++.++++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 566678889999999999998765 7889999999999999999999999998999999999995 58999999999
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
.+++||++..... ...+..|.++|.|+.|||++.+|++|+.|++|+||++.+.+
T Consensus 200 ~lqlWDlRqp~r~--------------------------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 200 YLQLWDLRQPDRC--------------------------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred eEEEeeccCchhH--------------------------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 9999999875432 23577899999999999999999999999999999999877
Q ss_pred eeEEEeecCcCCCeEEEEEccCCCE-EEEEe--CCCcEEEEeCCCC-eeEEEeecCCCCEEEEEEeC
Q 000961 238 AWEVDTLRGHMNNVSCVMFHAKQDI-IVSNS--EDKSIRVWDVTKR-TGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 238 ~~~~~~l~~h~~~V~~l~~sp~g~~-l~sgs--~dg~I~vwd~~~~-~~~~~~~~~~~~i~~la~sp 300 (1208)
..+..++. ...+|.++.|-|..++ |++++ .|-.|+|||++.. -+..++..|.+.++.++|..
T Consensus 254 ~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 254 AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 64444443 4578999999997654 55554 4678999999754 34567888888899999976
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.6e-20 Score=200.10 Aligned_cols=291 Identities=20% Similarity=0.296 Sum_probs=224.9
Q ss_pred eEeecCCCCEEEEEEeCCC--CEEEEEecCCeEEEEECCCC----eEEEEecccccCEEEEEEEcCCC-EEEEEECCCeE
Q 000961 3 TKFETKSNRVKGLSFHSKR--PWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKI 75 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg--~~Lasg~~dg~I~iWd~~~g----~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I 75 (1208)
.....|..+|++++|||.. +.+|+|...|.|-+||+.+. .-+..+..|.++|.++.|+|... .+.+.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3567789999999999954 58888888999999999532 34566788999999999999654 78899999999
Q ss_pred EEEECCCCeE--EEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCEEEEEEeeCC-CEEE
Q 000961 76 KVWNYKMHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLTGHNHYVMCASFHPKE-DLVV 151 (1208)
Q Consensus 76 ~vWd~~~~~~--~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-i~~l~~h~~~V~~l~~~p~~-~~l~ 151 (1208)
+.-|+++... +.++......+..+.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++++|-. .+++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999986543 333333555778899999988888888888999999987654 66777899999999999965 6899
Q ss_pred EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 000961 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1208)
Q Consensus 152 s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iw 231 (1208)
+++.|++.+|||++....+.. .......|...|+++.|||++-.|++.+.|..|+||
T Consensus 340 T~s~D~T~kIWD~R~l~~K~s-----------------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKAS-----------------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred ecccCcceeeeehhhhcCCCC-----------------------cceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 999999999999998665432 123456799999999999998889999999999999
Q ss_pred ECCCC-ceeEEEeecCcCC------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCC-CEE-EEEEeCCC
Q 000961 232 RMNET-KAWEVDTLRGHMN------NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-RFW-ILASHPEM 302 (1208)
Q Consensus 232 d~~~~-~~~~~~~l~~h~~------~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-~i~-~la~sp~~ 302 (1208)
|..-- ...+......|.. ......|.|+.++|++|-.-..|-|+|-..++.+..+..... .|. ...|||-+
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 98410 0000111112222 233568999999999999988999999888887777654443 344 46899999
Q ss_pred CEEEEEECCCeeeE
Q 000961 303 NLLAAGHDSGMIVF 316 (1208)
Q Consensus 303 ~~la~g~~~gi~v~ 316 (1208)
..+++|+..+-.+|
T Consensus 477 ~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIY 490 (498)
T ss_pred cceeccCCccceEE
Confidence 97777765444443
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.9e-19 Score=185.35 Aligned_cols=249 Identities=17% Similarity=0.314 Sum_probs=196.3
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC----eEEEEecccccCEEEEEEEc--CCCEEEEEECCCeEEEEE
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g----~~i~~l~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd 79 (1208)
.+|.+-|.++.|.+-|+++|+++.|++|+|||..+. .+....+.|.+.|..|.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 578899999999999999999999999999996533 45566789999999999954 588999999999999997
Q ss_pred CC---------CCeEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEECCCC------eEEEEEe-------cCC
Q 000961 80 YK---------MHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSR------TCISVLT-------GHN 135 (1208)
Q Consensus 80 ~~---------~~~~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s~------~~i~~l~-------~h~ 135 (1208)
-. ......++......|+.+.|.|. |-.+++++.||++|||+...- +....+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 42 12344567778889999999996 458999999999999976432 2222222 356
Q ss_pred CCEEEEEEeeCC---CEEEEEECC-----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCe
Q 000961 136 HYVMCASFHPKE---DLVVSASLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1208)
Q Consensus 136 ~~V~~l~~~p~~---~~l~s~s~D-----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 207 (1208)
.+..|+.|+|.. .+|++|+.+ +.+.||.......+- ...-.+.+|..+|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw-----------------------~kva~L~d~~dpI 226 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW-----------------------LKVAELPDHTDPI 226 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee-----------------------eeehhcCCCCCcc
Confidence 678899999853 678888865 478888875533211 1122566899999
Q ss_pred EEEEEcCC----CCEEEEEeCCCcEEEEECCCC------------------ceeEEEeecCcCCCeEEEEEccCCCEEEE
Q 000961 208 NWAAFHPT----LPLIVSGADDRQVKLWRMNET------------------KAWEVDTLRGHMNNVSCVMFHAKQDIIVS 265 (1208)
Q Consensus 208 ~~l~~sp~----g~~L~sgs~dg~I~iwd~~~~------------------~~~~~~~l~~h~~~V~~l~~sp~g~~l~s 265 (1208)
+.++|.|+ ..+|++++.|| |+||.+... ....+..+.+|.+.|..+.|+-.|..|++
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 99999995 34799999999 999998731 11224557899999999999999999999
Q ss_pred EeCCCcEEEEeCC
Q 000961 266 NSEDKSIRVWDVT 278 (1208)
Q Consensus 266 gs~dg~I~vwd~~ 278 (1208)
.+.||.||+|...
T Consensus 306 tGdDG~VRLWkan 318 (361)
T KOG2445|consen 306 TGDDGCVRLWKAN 318 (361)
T ss_pred cCCCceeeehhhh
Confidence 9999999999753
No 154
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=1.2e-20 Score=204.56 Aligned_cols=238 Identities=16% Similarity=0.246 Sum_probs=207.3
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeE--EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~--i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1208)
..+-|+++.++|||+.|++|+.-.++.|||+...+. ...+....-...+++.+||.+...++..||.|.|||+.+...
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 456799999999999999999999999999875543 334444445678899999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECC
Q 000961 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 86 ~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
+..+.||.+.+.||..++||..|-+|+-|++||.||+++++.+.... ..+.|+++..+|+++++++|-.++.|.|-...
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999887765543 35789999999999999999999999888776
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~ 245 (1208)
..+ ++.+.-|+..|.++.|.+.|+++++.+.|..+..|++.-+.. +....
T Consensus 623 kp~----------------------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas--iFqsk 672 (705)
T KOG0639|consen 623 KPE----------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSK 672 (705)
T ss_pred Ccc----------------------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc--eeecc
Confidence 533 456778999999999999999999999999999999988775 44433
Q ss_pred CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000961 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 246 ~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
....|.++..+.|.++|++|+.|+.-.||.+
T Consensus 673 -E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 -ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4678999999999999999999988888864
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.5e-19 Score=206.55 Aligned_cols=264 Identities=16% Similarity=0.252 Sum_probs=212.1
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC-eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH-RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~-~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~ 127 (1208)
.|...-+.|+|.|+|..+++++.||.|++|+..+. ....++..+...|.+++.. +.+|++++.+++|.+|...+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 68888999999999999999999999999997655 3344444467777777654 44899999999999999998877
Q ss_pred EEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCe
Q 000961 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1208)
Q Consensus 128 i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 207 (1208)
-..+....-++.+++|+.+|++++.||.|-.|++-+...... ...+.+|+.+|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~---------------------------~~~lrgh~apV 141 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ---------------------------EKVLRGHDAPV 141 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch---------------------------heeecccCCce
Confidence 666666678899999999999999999999999999876433 34788999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecC--------cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG--------HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 208 ~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~--------h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
.++.|+|.+++|++.+.||.|++|++.++.. ..++.+ ....+..++|+|+|..++..+.|+.|++|+..+
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~--~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL--SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccchh--hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 9999999999999999999999999998775 333322 134567899999988899999999999999999
Q ss_pred CeeEEEeec--CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeec
Q 000961 280 RTGVQTFRR--EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (1208)
Q Consensus 280 ~~~~~~~~~--~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~ 357 (1208)
+.....++. +...+..++|+|+|.+||+++ .+|.|.+||..+-.. .
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~--------------------------~~g~I~vWnv~t~~~------~ 267 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAAST--------------------------LDGQILVWNVDTHER------H 267 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeec--------------------------cCCcEEEEecccchh------c
Confidence 888877764 334589999999999999987 366677777765111 1
Q ss_pred CCCCCCCCcCCeEEEEcCCCCEE
Q 000961 358 RPGSTSLNQSPRTLSYSPTENAV 380 (1208)
Q Consensus 358 ~~~~~~~~~~i~~l~~spdg~~l 380 (1208)
.. ...|.+++|.|+.+.+
T Consensus 268 ~~-----~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 268 EF-----KRAVCCEAWKPNANAI 285 (933)
T ss_pred cc-----cceeEEEecCCCCCee
Confidence 11 2267777777776644
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3e-19 Score=198.15 Aligned_cols=294 Identities=20% Similarity=0.317 Sum_probs=220.6
Q ss_pred EEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC--EEEEEECCCcEEEEEC
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP--WIVSASDDQTIRIWNW 122 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~--~l~s~s~Dg~I~iwd~ 122 (1208)
..+.+|++.|++|..+|.|.+|++|++||+|+||.+.+|+|+.++. ..+.|++++|+|.+. .|+++-... +.|-|.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence 4567999999999999999999999999999999999999999987 456899999999765 444443322 333332
Q ss_pred CCC-------------------------------------eEEEEEecCCCCEEEEEEeeCCCEEEEEECC---CeEEEE
Q 000961 123 QSR-------------------------------------TCISVLTGHNHYVMCASFHPKEDLVVSASLD---QTVRVW 162 (1208)
Q Consensus 123 ~s~-------------------------------------~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D---g~V~vw 162 (1208)
.-| .-++..-.|...|..+.||..|+||++...+ ..|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 111 1123344588899999999999999997654 468888
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~ 242 (1208)
+++..+... .+....+.|.++.|||..++|++++. ..|++||+..... +.
T Consensus 552 QLSK~~sQ~---------------------------PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel--vK 601 (733)
T KOG0650|consen 552 QLSKRKSQS---------------------------PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL--VK 601 (733)
T ss_pred ecccccccC---------------------------chhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH--HH
Confidence 887644321 23345677899999999999999884 6799999988765 66
Q ss_pred eecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-eeEEEeecCCCCEEEEEEeCCCCEEEEEECCCee-eEeeCC
Q 000961 243 TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI-VFKLER 320 (1208)
Q Consensus 243 ~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~-~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~-v~~l~~ 320 (1208)
.+......|++++.||.|.-|+.|+.|+.+..+|+.-. ++.++++.|...++++++|+.-.++++|+++|.+ ||.-
T Consensus 602 kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg-- 679 (733)
T KOG0650|consen 602 KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG-- 679 (733)
T ss_pred HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee--
Confidence 77777788999999999999999999999999999754 5677888899999999999999999999986533 3311
Q ss_pred CcceEEecCCEEEEEeCCeEEEEE-c-cCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 321 ERPAFAVSGDSLFYAKDRFLRYYE-F-STQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 321 ~~~~~s~~~~~L~~~~d~~i~v~d-~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
.+|+ + .+...+++..++.+.... ...|....|+|...++..++ .+|++++|.
T Consensus 680 --------------------~VY~Dl~qnpliVPlK~L~gH~~~~-~~gVLd~~wHP~qpWLfsAG--Ad~tirlfT 733 (733)
T KOG0650|consen 680 --------------------MVYNDLLQNPLIVPLKRLRGHEKTN-DLGVLDTIWHPRQPWLFSAG--ADGTIRLFT 733 (733)
T ss_pred --------------------eeehhhhcCCceEeeeeccCceeec-ccceEeecccCCCceEEecC--CCceEEeeC
Confidence 1221 1 222334444444332211 23577888999999886654 467999983
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-18 Score=179.83 Aligned_cols=248 Identities=19% Similarity=0.306 Sum_probs=189.0
Q ss_pred cccccCEEEEEEEcCCCEEEEEECCCeEEEEECC----CCeEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEE
Q 000961 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK----MHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 48 ~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~----~~~~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd 121 (1208)
.+|..-|+++.|.+.|+++|+|+.|++|+|||.+ +..+....+.|.+.|..+.|.+- |+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4789999999999999999999999999999964 34577778899999999999753 78999999999999997
Q ss_pred CCC---------CeEEEEEecCCCCEEEEEEeeC--CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccc
Q 000961 122 WQS---------RTCISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG 190 (1208)
Q Consensus 122 ~~s---------~~~i~~l~~h~~~V~~l~~~p~--~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1208)
-+. .....++....+.|+.+.|.|. |-.+++++.||.+|||+....-....-+- ...+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L---------q~Ei~- 159 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL---------QHEIQ- 159 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh---------hhhhh-
Confidence 521 1234566677889999999995 57899999999999999754222111000 00000
Q ss_pred cccceEEEEEeccCCCeEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCC--ceeEEEeecCcCCCeEEEEEccC-
Q 000961 191 GVDAVVKYVLEGHDRGVNWAAFHPT---LPLIVSGADD-----RQVKLWRMNET--KAWEVDTLRGHMNNVSCVMFHAK- 259 (1208)
Q Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~---g~~L~sgs~d-----g~I~iwd~~~~--~~~~~~~l~~h~~~V~~l~~sp~- 259 (1208)
.+......+..+..|+.|+|. .++|++|+.+ +.++||..... +...+.++.+|..+|+.++|.|+
T Consensus 160 ----~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 160 ----NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred ----hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 001122345667789999984 4688988876 57889887654 34457788999999999999995
Q ss_pred ---CCEEEEEeCCCcEEEEeCCCC--------------------eeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 260 ---QDIIVSNSEDKSIRVWDVTKR--------------------TGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 260 ---g~~l~sgs~dg~I~vwd~~~~--------------------~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
-.+|++++.|| |+||.+... +.+..+..|++.+|.+.|+-.|..|++.++
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 34789999999 999998731 124446678889999999999998887764
No 158
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1e-17 Score=195.60 Aligned_cols=455 Identities=15% Similarity=0.238 Sum_probs=293.8
Q ss_pred ceEeecCCCCEEEEEEeCCCC---EEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcC---CCEEE-EEECCCe
Q 000961 2 LTKFETKSNRVKGLSFHSKRP---WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---QPLFV-SGGDDYK 74 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~---~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~---~~~La-sgs~Dg~ 74 (1208)
++.|++|..+++.+.+.|... ++.+.+.+|.|++||...+.+++++..+ .+|..+.+.|. .+.++ .+..|..
T Consensus 50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~ 128 (792)
T KOG1963|consen 50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYS 128 (792)
T ss_pred hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC-CceeEEEechhHhCccceeEeecccce
Confidence 356899999999999988554 6778899999999999999999998643 34444444331 11222 2222221
Q ss_pred EE-EEECCCCeE-----EEEE--------ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE----EecCCC
Q 000961 75 IK-VWNYKMHRC-----LFTL--------LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV----LTGHNH 136 (1208)
Q Consensus 75 I~-vWd~~~~~~-----~~~l--------~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~----l~~h~~ 136 (1208)
+. -...+..+. +.+. ..|.. -.++.+++.+.+....- +..+.+|+..++..... -..|.-
T Consensus 129 ~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf 206 (792)
T KOG1963|consen 129 ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTF 206 (792)
T ss_pred eeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcc
Confidence 11 111111111 1111 12222 35678888887655554 56789999887541111 124666
Q ss_pred CEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC
Q 000961 137 YVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1208)
Q Consensus 137 ~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 216 (1208)
.++|.++||+++++++|..||.|.+|.--+.+. +......+.-|...|++++|+++|
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecccccceeEEecCC
Confidence 789999999999999999999999997543111 111223667799999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec--------
Q 000961 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-------- 288 (1208)
Q Consensus 217 ~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~-------- 288 (1208)
.+|++|+..|.+.+|.+.+++ ..-++.-.++|..+.++||+.+.+...+|..|.+....+.....++.+
T Consensus 264 ~~LlSGG~E~VLv~Wq~~T~~---kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~ 340 (792)
T KOG1963|consen 264 AYLLSGGREGVLVLWQLETGK---KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST 340 (792)
T ss_pred ceEeecccceEEEEEeecCCC---cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc
Confidence 999999999999999999988 455677788999999999999999999999999998766554433322
Q ss_pred ---CCCCEEEEEEeCC-CCEEEEEECCCeeeEeeCCCcc-------------------------eEEecCCEEEEE----
Q 000961 289 ---EHDRFWILASHPE-MNLLAAGHDSGMIVFKLERERP-------------------------AFAVSGDSLFYA---- 335 (1208)
Q Consensus 289 ---~~~~i~~la~sp~-~~~la~g~~~gi~v~~l~~~~~-------------------------~~s~~~~~L~~~---- 335 (1208)
..+-.+.++++|. +..+..|..+.+..|++.+... +.+..|+.+.+.
T Consensus 341 k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~ 420 (792)
T KOG1963|consen 341 KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARI 420 (792)
T ss_pred cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeee
Confidence 1334677888884 4445556666666776655432 122234455443
Q ss_pred -----e--CCeEEEEEccCCcceeeEeec-CCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC------
Q 000961 336 -----K--DRFLRYYEFSTQKDTQVIPIR-RPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI------ 401 (1208)
Q Consensus 336 -----~--d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~------ 401 (1208)
. ...+++|-.......-.+..+ ...| ...+...++.+..+.....+.+.||.+++|.+.....
T Consensus 421 d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH---~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s 497 (792)
T KOG1963|consen 421 DKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH---GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS 497 (792)
T ss_pred hhhhccCceEEEEEEEEcCCcceeEEEEEEecCC---CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence 1 345778887764443222221 1122 2234444444333332223334678999999844322
Q ss_pred -CCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC-ceeeeecCCc--ceEEEEEeC----CccEEEEeCCe
Q 000961 402 -GRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-EVVKKSILPI--AADAIFYAG----TGNLLCRAEDR 473 (1208)
Q Consensus 402 -~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~-~~~~~l~~~~--~v~~i~~s~----dg~~Las~dg~ 473 (1208)
..+.....-|..++++++|+.||..++.+. +++|.+||..+ ..+....... ++..+.+.. ++.+.......
T Consensus 498 ~W~c~~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (792)
T KOG1963|consen 498 NWTCKAIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQR 576 (792)
T ss_pred ceEEeeeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCce
Confidence 222212223677899999999999888887 89999999986 3332222222 344443333 45566667899
Q ss_pred EEEEEcCCCeEEEEEe
Q 000961 474 VVIFDLQQRLVLGDLQ 489 (1208)
Q Consensus 474 v~lwdl~~~~~l~~~~ 489 (1208)
+.+|++-+..+...+.
T Consensus 577 l~~WNll~~~l~w~~s 592 (792)
T KOG1963|consen 577 LSVWNLLSMSLIWNLS 592 (792)
T ss_pred EehHhhhhhheecchh
Confidence 9999998887776443
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.9e-16 Score=188.16 Aligned_cols=369 Identities=23% Similarity=0.410 Sum_probs=279.2
Q ss_pred EecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe-EEEEEccCCC-CEEEEEE-cCCCC-EEEEEEC-CCcEEEE
Q 000961 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-CLFTLLGHLD-YIRTVQF-HHEYP-WIVSASD-DQTIRIW 120 (1208)
Q Consensus 46 ~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-~~~~l~~h~~-~I~~v~f-s~d~~-~l~s~s~-Dg~I~iw 120 (1208)
.+..|...+.++.|++.+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999998876 6777776443 7888877 88887 5555455 9999999
Q ss_pred ECCC-CeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 121 NWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 121 d~~s-~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
+... ......+..|...|..+.|+|++..+++++. |+.+++|+..... ...
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~ 192 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------------------PLS 192 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---------------------------eEE
Confidence 9988 7888899999999999999999998888885 9999999997622 223
Q ss_pred EEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEE-eecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000961 199 VLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVD-TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~~~~-~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd 276 (1208)
.+.+|...|.+++|+|+++ .+++++.|+.|++||...+.. .. .+.+|.... ...|+|++.++++++.|+.+++|+
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~ 269 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL--LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD 269 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE--EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEee
Confidence 5556999999999999998 555558999999998886664 44 578888775 448999999999999999999999
Q ss_pred CCCCee-EEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEe
Q 000961 277 VTKRTG-VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (1208)
Q Consensus 277 ~~~~~~-~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~ 355 (1208)
...... ...+..|...+.++.++|++..+++++. ++.+.+|+..+........
T Consensus 270 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------------------d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS--------------------------DGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred ecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC--------------------------CCcEEEEEcCCCceEEEee
Confidence 986664 4444566788999999998887777653 3457788777655544333
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEE-EcCCC
Q 000961 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVL-DKSSN 434 (1208)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~-~~~dg 434 (1208)
...+ ...+..+.|++++..+.+.. ..++.+.+|++.... ... .......+..+.+++ ...... +..++
T Consensus 324 --~~~~---~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 324 --LKGH---EGPVSSLSFSPDGSLLVSGG-SDDGTIRLWDLRTGK--PLK--TLEGHSNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred --eccc---CCceEEEEECCCCCEEEEee-cCCCcEEeeecCCCc--eeE--EecCCceEEEEEECC-CCCEEEEecCCC
Confidence 1222 22588888843324554443 345788889888654 111 111111277788888 533333 56789
Q ss_pred EEEEEecC-CceeeeecCC-cceEEEEEeCCccEEEE--eCCeEEEEEcCC
Q 000961 435 QVLVKNLK-NEVVKKSILP-IAADAIFYAGTGNLLCR--AEDRVVIFDLQQ 481 (1208)
Q Consensus 435 ~I~Iwdl~-~~~~~~l~~~-~~v~~i~~s~dg~~Las--~dg~v~lwdl~~ 481 (1208)
.+.+|+.. .......... ..+....+++++..++. .++.+.+|+..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 99999999 4444445544 68889999999988876 578999999877
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=6.8e-19 Score=195.33 Aligned_cols=207 Identities=17% Similarity=0.207 Sum_probs=148.2
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce-----eEEEeecCcCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeC
Q 000961 205 RGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKA-----WEVDTLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 205 ~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~~-----~~~~~l~~h~~~V~~l~~sp-~g~~l~sgs~dg~I~vwd~ 277 (1208)
..|+.+.|.| |...|+++++||.|++|.+..+.. .+...+..|...|+++.||| -.+.|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4588899999 667899999999999999876533 22456788999999999999 4568999999999999999
Q ss_pred CCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeec
Q 000961 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (1208)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~ 357 (1208)
.+++....+.+|.+.|..++|||+|+.+|+-+ +|+++++|+..+++. ++..-+
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc--------------------------KDg~~rVy~Prs~e~-pv~Eg~ 760 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC--------------------------KDGTLRVYEPRSREQ-PVYEGK 760 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeee--------------------------cCceEEEeCCCCCCC-ccccCC
Confidence 99999999999999999999999999999877 688999999887654 222211
Q ss_pred CCCCCCCCcCCeEEEEcCCCCEEEEEEec--CCCEEEEEEccCCCCCCCcc-cccccCCceEEEEEEeC-CcEEEEEcCC
Q 000961 358 RPGSTSLNQSPRTLSYSPTENAVLICSDV--DGGSYELYVIPKDSIGRGDS-VQDAKKGLGGSAIFIAR-NRFAVLDKSS 433 (1208)
Q Consensus 358 ~~~~~~~~~~i~~l~~spdg~~llv~~~~--~~g~v~l~~l~~~~~~~~~~-~~~~~~~~i~~~~fs~d-~~~l~~~~~d 433 (1208)
. .....-..+.|.-||+++++++-. ....+.+|+...-..+.+.. .++... .+.--.|.+| +-++++|..|
T Consensus 761 g----pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 761 G----PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred C----CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-ccccccccCCCceEEEecCCC
Confidence 1 111245668899999987765432 23467777765432211100 011100 1111123344 3567788889
Q ss_pred CEEEEEecCC
Q 000961 434 NQVLVKNLKN 443 (1208)
Q Consensus 434 g~I~Iwdl~~ 443 (1208)
..|.+|.+-.
T Consensus 836 ~~v~~yEv~~ 845 (1012)
T KOG1445|consen 836 RFVNMYEVIY 845 (1012)
T ss_pred ceEEEEEecC
Confidence 9999998873
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=3.6e-19 Score=187.82 Aligned_cols=244 Identities=25% Similarity=0.420 Sum_probs=190.4
Q ss_pred ccccCEEEEEEEcCC--CEEEEEECCCeEEEEECC----------------CCeEEEEEccCCCCEEEEEEcCCCC-EEE
Q 000961 49 EHDGPVRGVHFHKSQ--PLFVSGGDDYKIKVWNYK----------------MHRCLFTLLGHLDYIRTVQFHHEYP-WIV 109 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~--~~Lasgs~Dg~I~vWd~~----------------~~~~~~~l~~h~~~I~~v~fs~d~~-~l~ 109 (1208)
.|.+.|+.+.-++-+ .+.++-+..|.|.||++. ..++++++.+|...=..++|||-.. .|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 577778777777654 466777889999999974 2467889999999999999999332 588
Q ss_pred EEECCCcEEEEECCCCeEE---EEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeecccc
Q 000961 110 SASDDQTIRIWNWQSRTCI---SVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN 185 (1208)
Q Consensus 110 s~s~Dg~I~iwd~~s~~~i---~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~ 185 (1208)
+|.--+.|++|...++.-. ..+.+|+..|-.++|+|.. ..|++||.||+|+|||++...++.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~-------------- 294 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA-------------- 294 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--------------
Confidence 8888899999998876532 3456799999999999976 789999999999999999864432
Q ss_pred ccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEeecCcCCCeEEEEEccC-CCEE
Q 000961 186 TDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAK-QDII 263 (1208)
Q Consensus 186 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~-~~~~~l~~h~~~V~~l~~sp~-g~~l 263 (1208)
......|.+.|+.+.|+...++|++|++||+++|||++.-+. .++..+.-|..+|+++.|+|. ...|
T Consensus 295 -----------~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 295 -----------AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred -----------eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceE
Confidence 123478999999999999999999999999999999987543 247789999999999999994 5678
Q ss_pred EEEeCCCcEEEEeCCCCee----------------EEEeecC--CCCEEEEEEeCCCC-EEEEEECCCeeeEe
Q 000961 264 VSNSEDKSIRVWDVTKRTG----------------VQTFRRE--HDRFWILASHPEMN-LLAAGHDSGMIVFK 317 (1208)
Q Consensus 264 ~sgs~dg~I~vwd~~~~~~----------------~~~~~~~--~~~i~~la~sp~~~-~la~g~~~gi~v~~ 317 (1208)
++++.|..|.+||+....- .+.+-.| ...+..+.|+++-. ++++..-+|+-||+
T Consensus 364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 8899999999999863211 1111122 34577788998654 55555667777765
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=6e-19 Score=190.71 Aligned_cols=299 Identities=16% Similarity=0.274 Sum_probs=218.5
Q ss_pred CCeEEEEecccccCEEEEEEEcCCC--EEEEEECCCeEEEEECCC----CeEEEEEccCCCCEEEEEEcCCCC-EEEEEE
Q 000961 40 MGTLIDRFDEHDGPVRGVHFHKSQP--LFVSGGDDYKIKVWNYKM----HRCLFTLLGHLDYIRTVQFHHEYP-WIVSAS 112 (1208)
Q Consensus 40 ~g~~i~~l~~h~~~V~~l~fsp~~~--~Lasgs~Dg~I~vWd~~~----~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s 112 (1208)
+-......+.|.++|++++|||..+ ++++|..-|+|-+||+.+ ..-+..+..|+.+|.++.|+|.+. .+++.|
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 3344455667899999999999765 788888899999999952 234566788999999999999764 899999
Q ss_pred CCCcEEEEECCCCeEEEEEe--cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccc
Q 000961 113 DDQTIRIWNWQSRTCISVLT--GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG 190 (1208)
Q Consensus 113 ~Dg~I~iwd~~s~~~i~~l~--~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1208)
.||+|+.-|++.+..-..+. .....+.++.|+.+...++.++.=|...+||+++....
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~-------------------- 314 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE-------------------- 314 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc--------------------
Confidence 99999999998764433333 24556778888888888888888889999999875432
Q ss_pred cccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcee--EEEeecCcCCCeEEEEEccCCCEEEEEe
Q 000961 191 GVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (1208)
Q Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~~sp~g~~l~sgs 267 (1208)
...+.-|...|..++++|..+ +|++++.|++++|||++.-... +......|...|.+..|||.+..|++.+
T Consensus 315 ------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 315 ------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred ------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec
Confidence 124556888999999999655 6899999999999999863321 2345567999999999999888899999
Q ss_pred CCCcEEEEeCC----CCeeEEEeecCCC-----CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCC
Q 000961 268 EDKSIRVWDVT----KRTGVQTFRREHD-----RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDR 338 (1208)
Q Consensus 268 ~dg~I~vwd~~----~~~~~~~~~~~~~-----~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~ 338 (1208)
.|..|+|||.. ...+..++..... ......|.|+.+++++|.- ..
T Consensus 389 ~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~--------------------------~r 442 (498)
T KOG4328|consen 389 QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY--------------------------PR 442 (498)
T ss_pred cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc--------------------------Cc
Confidence 99999999983 3344444442221 1334679998888888862 44
Q ss_pred eEEEEEccCCcceeeEeecCCCCCCCCcCCeE-EEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 339 FLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRT-LSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 339 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
.|-++|-..++.+..+..+. ...|.+ ..|+|-+..++. ++...|.+.+|.-.
T Consensus 443 ~IDv~~~~~~q~v~el~~P~------~~tI~~vn~~HP~~~~~~a-G~~s~Gki~vft~k 495 (498)
T KOG4328|consen 443 PIDVFDGNGGQMVCELHDPE------SSTIPSVNEFHPMRDTLAA-GGNSSGKIYVFTNK 495 (498)
T ss_pred ceeEEcCCCCEEeeeccCcc------ccccccceeecccccceec-cCCccceEEEEecC
Confidence 57788877766433222111 113333 489998775554 44466788777643
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=4.3e-19 Score=187.30 Aligned_cols=246 Identities=21% Similarity=0.338 Sum_probs=190.5
Q ss_pred eecCCCCEEEEEEeCCC--CEEEEEecCCeEEEEECCC----------------CeEEEEecccccCEEEEEEEcCC-CE
Q 000961 5 FETKSNRVKGLSFHSKR--PWILASLHSGVIQLWDYRM----------------GTLIDRFDEHDGPVRGVHFHKSQ-PL 65 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg--~~Lasg~~dg~I~iWd~~~----------------g~~i~~l~~h~~~V~~l~fsp~~-~~ 65 (1208)
.-+|.+.++.+.-++-+ .+.++-+..|.|+|||+.. .+.+.++.+|.+.=.+++|||-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34677777777777644 5666667889999999742 25677888999999999999932 25
Q ss_pred EEEEECCCeEEEEECCCCeEEE---EEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCC---eEEEEEecCCCCE
Q 000961 66 FVSGGDDYKIKVWNYKMHRCLF---TLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYV 138 (1208)
Q Consensus 66 Lasgs~Dg~I~vWd~~~~~~~~---~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~---~~i~~l~~h~~~V 138 (1208)
|+||.--+.|++|...++.... .+.+|+..|-.++|||.. ..|++||-||+|+|||++++ .++.+ +.|.+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence 8888888899999998876543 466799999999999965 48899999999999999988 44444 7899999
Q ss_pred EEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-CC
Q 000961 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LP 217 (1208)
Q Consensus 139 ~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~ 217 (1208)
..+.|+.+..+|++|+.||+++|||++..+... ....+..|..+|+++.|+|. ..
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~------------------------pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ------------------------PVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCC------------------------cceeEEeccCCeeEEEeccccCc
Confidence 999999988899999999999999998855431 23467889999999999994 45
Q ss_pred EEEEEeCCCcEEEEECCCCce--------------eEEEeecCc--CCCeEEEEEccC-CCEEEEEeCCCcEEEEe
Q 000961 218 LIVSGADDRQVKLWRMNETKA--------------WEVDTLRGH--MNNVSCVMFHAK-QDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 218 ~L~sgs~dg~I~iwd~~~~~~--------------~~~~~l~~h--~~~V~~l~~sp~-g~~l~sgs~dg~I~vwd 276 (1208)
.|++++.|.+|.+||+....- .+.+.+.-| ...+..+.||+. ..++++.+.|| +.||-
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 788889999999999864321 011122223 345778889985 34777888887 55553
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.6e-18 Score=180.02 Aligned_cols=303 Identities=18% Similarity=0.349 Sum_probs=218.6
Q ss_pred eecCCCCEEEEEEeC----CC-CEEEEEecCCeEEEEECCCC---eEEEEec--ccccCEEEEEEEcC----CCEEEEEE
Q 000961 5 FETKSNRVKGLSFHS----KR-PWILASLHSGVIQLWDYRMG---TLIDRFD--EHDGPVRGVHFHKS----QPLFVSGG 70 (1208)
Q Consensus 5 l~~h~~~V~~lafsp----dg-~~Lasg~~dg~I~iWd~~~g---~~i~~l~--~h~~~V~~l~fsp~----~~~Lasgs 70 (1208)
.+.|..+|.+++|++ +. ..+|+++ ...+.+|..... ..++++. .|+.....++|+-+ .+++|.||
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 467889999999995 23 3455554 557889987533 3444442 47888889999753 56899999
Q ss_pred CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEE---ecCCCCEEEEEEeeC
Q 000961 71 DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMCASFHPK 146 (1208)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l---~~h~~~V~~l~~~p~ 146 (1208)
.-|.|+|.|+.++++...+.+|...|..+.|+|+.+ +++++|.|.+||+||+++..|+..+ .+|.+.|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 999999999999999999999999999999999874 8889999999999999999999988 479999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCCcceeecccc-ccccccccc-eEE-EEEeccCCCeEEEEEcCCCCEEEEEe
Q 000961 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMN-TDLFGGVDA-VVK-YVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1208)
Q Consensus 147 ~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~h~~~V~~l~~sp~g~~L~sgs 223 (1208)
|++|++++.|.++.+|++...+........ ....... ..-|..... ... ....-|...|-|+.|-. +++++-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s--~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSks 268 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELS--ITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKS 268 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhh--cccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecc
Confidence 999999999999999999854433211110 0000000 000000000 001 13456888888888875 6899989
Q ss_pred CCCcEEEEECCC-Cce-----------eEEEeecCcCCCeEEE--EEccCCCEEEEEeCCCcEEEEeCCCCeeE--EEee
Q 000961 224 DDRQVKLWRMNE-TKA-----------WEVDTLRGHMNNVSCV--MFHAKQDIIVSNSEDKSIRVWDVTKRTGV--QTFR 287 (1208)
Q Consensus 224 ~dg~I~iwd~~~-~~~-----------~~~~~l~~h~~~V~~l--~~sp~g~~l~sgs~dg~I~vwd~~~~~~~--~~~~ 287 (1208)
-++.|..|..-. .+. .....+.-....|+-+ +|.|-++.|+.|...|.|.+||++...+. .++.
T Consensus 269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~ 348 (385)
T KOG1034|consen 269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT 348 (385)
T ss_pred cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence 899999998721 111 1122333334455555 45577899999999999999999876652 1222
Q ss_pred --cCCCCEEEEEEeCCCCEEEEEECCC
Q 000961 288 --REHDRFWILASHPEMNLLAAGHDSG 312 (1208)
Q Consensus 288 --~~~~~i~~la~sp~~~~la~g~~~g 312 (1208)
.....|...+|+.|+.+|+..++++
T Consensus 349 ~s~~~~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 349 HSKSGSTVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred eccccceeeeeeecccCcEEEEEeCCC
Confidence 2345688899999998888777544
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3e-19 Score=192.67 Aligned_cols=245 Identities=18% Similarity=0.326 Sum_probs=189.5
Q ss_pred EEEEEeC-------CCCEEEEEecCCeEEEEECCCCeE---------------------EEEecccccCEEEEEEEcC-C
Q 000961 13 KGLSFHS-------KRPWILASLHSGVIQLWDYRMGTL---------------------IDRFDEHDGPVRGVHFHKS-Q 63 (1208)
Q Consensus 13 ~~lafsp-------dg~~Lasg~~dg~I~iWd~~~g~~---------------------i~~l~~h~~~V~~l~fsp~-~ 63 (1208)
.|++|.. .|+++|.|+.+..|.|||+.--.. -..-.+|+..|..++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 368999999999999999742100 0112368999999999875 4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEE
Q 000961 64 PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1208)
Q Consensus 64 ~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~ 142 (1208)
+.|||||.|.+|++||+.++++..++..|.+.|.++.|+|..+ .|++|+.|++|.+.|.+........-.-.+.|-.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 5899999999999999999999999999999999999999754 889999999999999985333222222457799999
Q ss_pred EeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEE
Q 000961 143 FHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIV 220 (1208)
Q Consensus 143 ~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~ 220 (1208)
|+|.. ..+++++.||+|+-+|++.... ..+.+..|..+|.++++++.-+ +++
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~--------------------------~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGK--------------------------PVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCC--------------------------ceeEEEeccCCcceEEecCCCCccee
Confidence 99976 6788888999999999988432 4568889999999999998654 688
Q ss_pred EEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeE
Q 000961 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGV 283 (1208)
Q Consensus 221 sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~-~l~sgs~dg~I~vwd~~~~~~~ 283 (1208)
+++.|+.|++|++.......+..-.-.-+...|.++.|+-. +++.|+..+.++|||+.+...+
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 89999999999998765422222111223466777777654 5677888888999999876554
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=2.9e-18 Score=183.13 Aligned_cols=296 Identities=19% Similarity=0.270 Sum_probs=214.6
Q ss_pred CCCEEEEEEeCCCC-EEEEEecCCeEEEEECCCC---------eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEE
Q 000961 9 SNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMG---------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 9 ~~~V~~lafspdg~-~Lasg~~dg~I~iWd~~~g---------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1208)
..+|.++.|+++.. .+|+|+.|..|+||-+..+ +.+..+..|...|+++.|+|+|.+|+||+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999766 9999999999999987532 2345677899999999999999999999999999999
Q ss_pred ECC--------C--------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEE
Q 000961 79 NYK--------M--------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1208)
Q Consensus 79 d~~--------~--------~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~ 142 (1208)
-.. + ......+.+|...|..++|+|++.++++++.|.++++||+..|+....+..|.+.|..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 234456788999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC----CeEEEEEcCCCCE
Q 000961 143 FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR----GVNWAAFHPTLPL 218 (1208)
Q Consensus 143 ~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~l~~sp~g~~ 218 (1208)
|.|-++++++-+.|...+++++...+........ .+ ....+....+.... --|+. -...++|+|+|.+
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~-~m-----~~~~~~~~e~~s~r--LfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD-IM-----PAKAFNEREGKSTR--LFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeee-Ee-----eecccCCCCcceee--eeecCchhhhhhhcccCCCCcE
Confidence 9999999999999998888777554332211100 00 00000000111111 11222 2456899999999
Q ss_pred EEEEeC----CCc-----EEEEECCCCceeEEEeecCcCCCeEEEEEcc------------------CCCEEEEEeCCCc
Q 000961 219 IVSGAD----DRQ-----VKLWRMNETKAWEVDTLRGHMNNVSCVMFHA------------------KQDIIVSNSEDKS 271 (1208)
Q Consensus 219 L~sgs~----dg~-----I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp------------------~g~~l~sgs~dg~ 271 (1208)
+++.+. .+. .++++-...+. +...+.+...+...+.|+| -+-.++.++. ..
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~r-P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~s 322 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKR-PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NS 322 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccC-ceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ce
Confidence 988642 222 23443332221 2444555555555555554 2234555655 46
Q ss_pred EEEEeCCCCeeEEEee-cCCCCEEEEEEeCCCCEEEEEECCCee
Q 000961 272 IRVWDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGHDSGMI 314 (1208)
Q Consensus 272 I~vwd~~~~~~~~~~~-~~~~~i~~la~sp~~~~la~g~~~gi~ 314 (1208)
|.+||..+..++.... .|-..++.++|+++|..++..+.+|..
T Consensus 323 vyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 323 VYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred EEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence 9999998877776654 466789999999999999988866643
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=4.2e-18 Score=176.32 Aligned_cols=273 Identities=21% Similarity=0.334 Sum_probs=210.4
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCC--------e----EEEEec-ccccCEEEEEEE-------cCCCEEEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMG--------T----LIDRFD-EHDGPVRGVHFH-------KSQPLFVSG 69 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g--------~----~i~~l~-~h~~~V~~l~fs-------p~~~~Lasg 69 (1208)
+-.+++.|||||..|++-++|..+.+|++... . ...+++ .....|...+|- |+..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34678899999999999999999999997421 1 111111 133457777774 667799999
Q ss_pred ECCCeEEEEECCCCeEEEEEcc--CCC---CEEEEEEcCCCCEEEEEECCCcEEEEEC-CCCeEEEEE-------ecCCC
Q 000961 70 GDDYKIKVWNYKMHRCLFTLLG--HLD---YIRTVQFHHEYPWIVSASDDQTIRIWNW-QSRTCISVL-------TGHNH 136 (1208)
Q Consensus 70 s~Dg~I~vWd~~~~~~~~~l~~--h~~---~I~~v~fs~d~~~l~s~s~Dg~I~iwd~-~s~~~i~~l-------~~h~~ 136 (1208)
+.+.-|++||.-+|+....+.+ |.+ .-.+++|+|||.+|++|. ...|+++|+ +.|+..... .+..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9999999999999988776653 433 456899999999988765 679999998 454322211 23467
Q ss_pred CEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 137 YVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 137 ~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
-+.|++|+|.. ..++.++..+++-++.-.+.+ ....+.+|.++|+.++|+++
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------------------------pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------------------------PLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCC---------------------------ceeeecccCCCeeeEEeccC
Confidence 78999999966 589999988888888765533 33467799999999999999
Q ss_pred CCEEEEEeC-CCcEEEEECCCCceeEEEeecCcCC-CeEEE--EEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEeecCC
Q 000961 216 LPLIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMN-NVSCV--MFHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFRREH 290 (1208)
Q Consensus 216 g~~L~sgs~-dg~I~iwd~~~~~~~~~~~l~~h~~-~V~~l--~~sp~g~~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~ 290 (1208)
|+.|.+|+. |-.|..||++..+. .+..+..|.. .-..| ...|++++|++|+.||.|++||+.+ +..+..+..+.
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred cCeecccccCCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 999999985 77899999997654 2556666655 22334 4468999999999999999999998 67677788888
Q ss_pred CCEEEEEEeCCCCEEEEEECC
Q 000961 291 DRFWILASHPEMNLLAAGHDS 311 (1208)
Q Consensus 291 ~~i~~la~sp~~~~la~g~~~ 311 (1208)
+.+..++++|--.++|+++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 999999999998888887643
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-18 Score=188.37 Aligned_cols=260 Identities=16% Similarity=0.242 Sum_probs=208.9
Q ss_pred CCEEEEEEeCCCCEEEEE--ecCCeEEEEECCCCe---E--EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 10 NRVKGLSFHSKRPWILAS--LHSGVIQLWDYRMGT---L--IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg--~~dg~I~iWd~~~g~---~--i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
..+.++.|+.... |+++ +.|..|++|. +.|+ . +....+. .-.|++......++++||..+.|+|||++.
T Consensus 35 pg~~s~~w~~~n~-lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 35 PGDFSFNWQRRNF-LVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred Ccceeeeccccce-EEEeecCCceeEEEec-ccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH
Confidence 3488999987664 4443 4578899997 4444 2 2222222 345555555668999999999999999998
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-CEEEEEEeeCCC-EEEEEECCCeEE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH-YVMCASFHPKED-LVVSASLDQTVR 160 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~-~V~~l~~~p~~~-~l~s~s~Dg~V~ 160 (1208)
..+.+.+.+|.+.|+++.++....+|++++..|.|.|..+.++.....+...++ .|.-+.|+|..+ +|.+++.+|.|.
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 888889999999999999999999999999999999999999988888875534 455899999774 667789999999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcee
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
+||+.+..... ...+.|..+...++|+|..+ +|++.+.|..|.+||....+.
T Consensus 191 lwDv~g~sp~~--------------------------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s- 243 (673)
T KOG4378|consen 191 LWDVQGMSPIF--------------------------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS- 243 (673)
T ss_pred EEeccCCCccc--------------------------chhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-
Confidence 99998755432 25567999999999999654 678889999999999997664
Q ss_pred EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEeecCCCCEEEEEEeCCC
Q 000961 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWILASHPEM 302 (1208)
Q Consensus 240 ~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~~~i~~la~sp~~ 302 (1208)
.. ......+.+.++|+++|.+|+.|+..|.|..||++. ..++.+...|...|++++|-|..
T Consensus 244 -~~-~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 244 -TD-RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -cc-eeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 22 233467889999999999999999999999999985 45677888888899999998875
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2e-19 Score=214.89 Aligned_cols=245 Identities=24% Similarity=0.396 Sum_probs=202.5
Q ss_pred CCCEEEEEEeCCCCE----EEEEecCCeEEEEECCC---C---eEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEE
Q 000961 9 SNRVKGLSFHSKRPW----ILASLHSGVIQLWDYRM---G---TLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKV 77 (1208)
Q Consensus 9 ~~~V~~lafspdg~~----Lasg~~dg~I~iWd~~~---g---~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~v 77 (1208)
..+.+.++|.+.|.. ||.|+.||.|.+||... + ..+.++..|.++|+++.|++.+. +||+|++||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 457889999997766 88899999999999754 2 34567789999999999999776 9999999999999
Q ss_pred EECCCCeEEEEEc--cCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCC--CEEEEEEeeCC-CEEE
Q 000961 78 WNYKMHRCLFTLL--GHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNH--YVMCASFHPKE-DLVV 151 (1208)
Q Consensus 78 Wd~~~~~~~~~l~--~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~--~V~~l~~~p~~-~~l~ 151 (1208)
||+.+-+.-.+.. ...+.|.+++|+..- ..|++++.+|.+.|||++..+.+-.+..|.. .+..++|||+. ..|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998755444442 245789999999764 4778889999999999998888877776654 46789999987 6777
Q ss_pred EEECCC---eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCc
Q 000961 152 SASLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQ 227 (1208)
Q Consensus 152 s~s~Dg---~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~L~sgs~dg~ 227 (1208)
+++.|. .|.+||++.... ...++++|..+|.++.|++.+ .++++++.|+.
T Consensus 224 ~As~dd~~PviqlWDlR~ass--------------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASS--------------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred eecCCCCCceeEeecccccCC--------------------------chhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence 777654 589999876322 122568999999999999976 78999999999
Q ss_pred EEEEECCCCceeEEEeecCcCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe
Q 000961 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~-~l~sgs~dg~I~vwd~~~~~ 281 (1208)
|.+|+.++++. +..+....+.+..+.|+|... .+++++-||.|.|+.+....
T Consensus 278 ii~wN~~tgEv--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEV--LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceE--eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999987 888888889999999999665 88889999999999987543
No 170
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=4.3e-18 Score=184.79 Aligned_cols=287 Identities=15% Similarity=0.243 Sum_probs=212.9
Q ss_pred EecCCeEEEEECCCCeEEEEecccc--cCEEEEEEEcCCCE-EEEEECCCeEEEEECCCCe---E--EEEEccCCCCEEE
Q 000961 27 SLHSGVIQLWDYRMGTLIDRFDEHD--GPVRGVHFHKSQPL-FVSGGDDYKIKVWNYKMHR---C--LFTLLGHLDYIRT 98 (1208)
Q Consensus 27 g~~dg~I~iWd~~~g~~i~~l~~h~--~~V~~l~fsp~~~~-Lasgs~Dg~I~vWd~~~~~---~--~~~l~~h~~~I~~ 98 (1208)
++....++|||+...+....+..|. ..+.++.|+....+ +++.+.|..|++|.-. |+ . +....+ +.-.|
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~g--d~~~C 84 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTG--DNAFC 84 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeecccc--chHHH
Confidence 3345569999998776665554333 23899999877652 2334578899999743 32 1 222222 23455
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcc
Q 000961 99 VQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178 (1208)
Q Consensus 99 v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~ 178 (1208)
++......++++|+..+.|+|||++...+.+.+++|...|+++.++-.+.+|++++..|.|.+..+.+......
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~------ 158 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT------ 158 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc------
Confidence 55555568999999999999999998888889999999999999999999999999999999999887554321
Q ss_pred eeeccccccccccccceEEEEEe-ccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEE
Q 000961 179 LRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256 (1208)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~ 256 (1208)
+. +....|.-+.|+|..+ +|.+++++|.|.+||....... ......|..+...++|
T Consensus 159 ---------------------f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~-~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 159 ---------------------FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI-FHASEAHSAPCRGICF 216 (673)
T ss_pred ---------------------eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc-cchhhhccCCcCccee
Confidence 11 1223456788998765 5677889999999999887652 4455789999999999
Q ss_pred ccCC-CEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEE
Q 000961 257 HAKQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA 335 (1208)
Q Consensus 257 sp~g-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~ 335 (1208)
+|.. .+|++.+.|+.|.+||.........+. ...+...++|+++|.+|++|..
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s------------------------- 270 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS------------------------- 270 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC-------------------------
Confidence 9954 567889999999999998777666654 4467899999999999999984
Q ss_pred eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCC
Q 000961 336 KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTE 377 (1208)
Q Consensus 336 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 377 (1208)
.|.|..||+...+. ++..+..+ ...|++++|-|.-
T Consensus 271 -~G~~i~YD~R~~k~-Pv~v~sah-----~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 -KGELIAYDMRSTKA-PVAVRSAH-----DASVTRVAFQPSP 305 (673)
T ss_pred -CceEEEEecccCCC-CceEeeec-----ccceeEEEeeecc
Confidence 66777899887443 33333222 3379999998754
No 171
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=3e-18 Score=191.96 Aligned_cols=252 Identities=18% Similarity=0.336 Sum_probs=193.4
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEE--ecccccCEEEEEEEcCCC-EEEEEECCCeEEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWN 79 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~--l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd 79 (1208)
..+..|-+.|..+.|-|....|++++.|.++++||+++++++.. +.+|.+.|.+++|+|..+ .|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 45678999999999999777889999999999999999998877 889999999999999766 789999999999999
Q ss_pred CCCCe---------------------------EEEEEccCCCCEEE---EEEcCCCCEEEEEEC-CCcEEEEECCCCeEE
Q 000961 80 YKMHR---------------------------CLFTLLGHLDYIRT---VQFHHEYPWIVSASD-DQTIRIWNWQSRTCI 128 (1208)
Q Consensus 80 ~~~~~---------------------------~~~~l~~h~~~I~~---v~fs~d~~~l~s~s~-Dg~I~iwd~~s~~~i 128 (1208)
+.-.. .+.....|...|.+ +.+..|...|++++. |+.|+|||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 75221 01112234445555 666678888999888 999999999865443
Q ss_pred EE--------EecC---CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEE
Q 000961 129 SV--------LTGH---NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1208)
Q Consensus 129 ~~--------l~~h---~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1208)
.. +..| ...+.++.....|.+|++.+.|+.|..|++.+.......
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~------------------------ 309 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVA------------------------ 309 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchh------------------------
Confidence 22 1223 345778888888888888888999999999875543211
Q ss_pred EEEeccC--CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC-CCEEEEEeCCCcEEE
Q 000961 198 YVLEGHD--RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRV 274 (1208)
Q Consensus 198 ~~~~~h~--~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~-g~~l~sgs~dg~I~v 274 (1208)
.+.++. .--..-..+|++.++++|+.|....+|.+.+... ....+.+|...|++++|.|. -.-+++++.|..+++
T Consensus 310 -~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 310 -EFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred -hccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence 111111 1112345689999999999999999999988765 35667899999999999984 234778899999999
Q ss_pred EeCCCC
Q 000961 275 WDVTKR 280 (1208)
Q Consensus 275 wd~~~~ 280 (1208)
|++..+
T Consensus 388 W~l~~~ 393 (720)
T KOG0321|consen 388 WRLSNG 393 (720)
T ss_pred EeccCc
Confidence 998644
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=4.1e-18 Score=177.09 Aligned_cols=254 Identities=22% Similarity=0.431 Sum_probs=199.3
Q ss_pred CCCCEEEEEEeCC----CCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCC
Q 000961 8 KSNRVKGLSFHSK----RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 8 h~~~V~~lafspd----g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~ 82 (1208)
|......++|+-| .+++|+|+.-|.|+|.|+.+++....+.+|.+.|+.+.|+|+.+ ++++++.|..|++||+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6677788888763 56899999999999999999999999999999999999999874 888999999999999999
Q ss_pred CeEEEEE---ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-------------------------EE---EE
Q 000961 83 HRCLFTL---LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-------------------------IS---VL 131 (1208)
Q Consensus 83 ~~~~~~l---~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-------------------------i~---~l 131 (1208)
..|+..+ .+|.+.|.++.|++++.+|++++.|.+|++|++...+. .. +-
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 9999887 57999999999999999999999999999999873210 00 12
Q ss_pred ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcccc--ccCCCcceeeccccccccccccceEEEEEeccCCCeEE
Q 000961 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKT--VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1208)
Q Consensus 132 ~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 209 (1208)
.-|..+|-|+.|- |+++++-|-++.|..|.....+... ..+. .....+...+.-....|+-
T Consensus 248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~---------------es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPP---------------ESATTILGEFDYPMCDIWF 310 (385)
T ss_pred ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCC---------------ccceeeeeEeccCccceEE
Confidence 3478888888887 6899999999999999874332210 0010 1111122233333444554
Q ss_pred --EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec--CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 210 --AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 210 --l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
.+|.|-++.|+.|...|.|.+||++........++. .....|...+|+.||..|+....|++|.-||..
T Consensus 311 irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 311 IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 455677889999999999999999887653222322 234578999999999999999999999999853
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=3.3e-19 Score=204.08 Aligned_cols=275 Identities=19% Similarity=0.314 Sum_probs=226.3
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
|+++|.||-+.|.|+.|...|.++++|+.|..++||...++.++....+|.+.|+.++.+.++.++++++.|..|+||.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE---E-ecCCCCEEEEEEeeCCCEEEEEECC
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV---L-TGHNHYVMCASFHPKEDLVVSASLD 156 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~---l-~~h~~~V~~l~~~p~~~~l~s~s~D 156 (1208)
.++.++..+.+|++.|++++|+|-. +.+.||++++||++-.-.+.. . .....-+.++.|..++..+.|++.|
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999964 778999999999871111111 0 1123557778888888899999999
Q ss_pred CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 000961 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 157 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~L~sgs~dg~I~iwd~~~ 235 (1208)
+.-+.|.+.... .+...+.-+.++.+. .+.+++-.+-.+.+|++.+
T Consensus 338 ~ea~n~e~~~l~---------------------------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 338 GEARNHEFEQLA---------------------------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred cccccchhhHhh---------------------------------hhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence 998888765322 222222222333222 3566667788899999999
Q ss_pred CceeEEEeecCcCCCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCee
Q 000961 236 TKAWEVDTLRGHMNNVSCVMFHAKQDI-IVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI 314 (1208)
Q Consensus 236 ~~~~~~~~l~~h~~~V~~l~~sp~g~~-l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~ 314 (1208)
+.. .+.+.+|...+..+.+||-... ..+++.||+..|||+-.|.+++.+......+..-.||++|..++...+.|-.
T Consensus 385 g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 385 GQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred chh--hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCce
Confidence 987 7888999999999999996655 4678999999999999999998887777778888999999988887665533
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=1.4e-16 Score=170.32 Aligned_cols=325 Identities=19% Similarity=0.272 Sum_probs=204.9
Q ss_pred CCCEEEEEEeeCCC-EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEc
Q 000961 135 NHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (1208)
Q Consensus 135 ~~~V~~l~~~p~~~-~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (1208)
..+|.++.|++++. .+++|+.|..|++|.+........ .........+..|...|+++.|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~ 74 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFS 74 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEc
Confidence 35788999998775 999999999999999865432210 01222344788999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECC--------C-----Ccee-EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 214 PTLPLIVSGADDRQVKLWRMN--------E-----TKAW-EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 214 p~g~~L~sgs~dg~I~iwd~~--------~-----~~~~-~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
|+|.+|++|+++|.|.+|... + .+.| ....+++|...|..++|+|++.++++++.|.++++||+..
T Consensus 75 p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 75 PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 999999999999999999876 2 1122 3466789999999999999999999999999999999999
Q ss_pred CeeEEEeecCCCCEEEEEEeCCCCEEEEEECCC-eeeEeeCCCcceEEecCCEEEEE--eCCeEEEEEccCCcceeeEee
Q 000961 280 RTGVQTFRREHDRFWILASHPEMNLLAAGHDSG-MIVFKLERERPAFAVSGDSLFYA--KDRFLRYYEFSTQKDTQVIPI 356 (1208)
Q Consensus 280 ~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~g-i~v~~l~~~~~~~s~~~~~L~~~--~d~~i~v~d~~~~~~~~~~~~ 356 (1208)
|.....+..|..-+..++|.|-++++++-+.+. ...+.+...+......-..+... ..+.-+.+. ++.
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r--------Lfh- 225 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR--------LFH- 225 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee--------eee-
Confidence 999999999999999999999999998765443 34443332222111110111100 111111111 110
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEec--CCCEEE---EEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEc
Q 000961 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDV--DGGSYE---LYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDK 431 (1208)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~~--~~g~v~---l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~ 431 (1208)
.. .+....+.++|+|+|..++.-.+. .++.+. -|-............+.........+.|+
T Consensus 226 De----TlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~---------- 291 (434)
T KOG1009|consen 226 DE----TLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS---------- 291 (434)
T ss_pred cC----chhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee----------
Confidence 00 112266778999999977653321 011110 11111111111110111111122222222
Q ss_pred CCCEEEEEecCCceeeeecCCcceEEEEEeCCccEE-EEeCCeEEEEEcCCCeEEEEEeC---CCeeEEEECCCCCEEEE
Q 000961 432 SSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLL-CRAEDRVVIFDLQQRLVLGDLQT---PFVKYVVWSNDMESVAL 507 (1208)
Q Consensus 432 ~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~L-as~dg~v~lwdl~~~~~l~~~~~---~~v~~v~ws~dg~~la~ 507 (1208)
-..+.+. .-..-..+..-|-+..+ +.+.+.|++||.++..++..... ..++.++||+||+++++
T Consensus 292 ----pVy~elr--------p~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 292 ----PVYYELR--------PLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred ----eeEEEec--------cccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEE
Confidence 1112221 00000002222333333 33578999999999887766554 78999999999999999
Q ss_pred EeCCe
Q 000961 508 LSKHA 512 (1208)
Q Consensus 508 ~s~~~ 512 (1208)
.+.|+
T Consensus 360 SS~DG 364 (434)
T KOG1009|consen 360 SSTDG 364 (434)
T ss_pred eccCC
Confidence 99998
No 175
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.78 E-value=2.6e-17 Score=168.26 Aligned_cols=247 Identities=18% Similarity=0.313 Sum_probs=194.9
Q ss_pred ecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcC---CCEEEEEECCCeEEEEECC
Q 000961 6 ETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS---QPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 6 ~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~---~~~Lasgs~Dg~I~vWd~~ 81 (1208)
.+|.-.|.++.|-| |...+.+++.|.+++|||..+-+....|+ ..+.|.+-+|||- .-++|+|..|-+|++-|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47888999999999 67788889999999999999988888885 5677899899884 3478888999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCE-EEEEECCCcEEEEECCCC-eEEEEE--------------ecCCCCEEEEEEee
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNWQSR-TCISVL--------------TGHNHYVMCASFHP 145 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~-l~s~s~Dg~I~iwd~~s~-~~i~~l--------------~~h~~~V~~l~~~p 145 (1208)
+|.+.+++.||.+.|.++.|+|...| |++|+.||.|++||++.- .|..++ ..|.+.|..++|..
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 99999999999999999999999885 578999999999999743 233322 35778899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 000961 146 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (1208)
Q Consensus 146 ~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d 225 (1208)
++.++++++.|..+++|+...++.......... ... ..| -.+. +. +-+...++.--.+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~----~n~---------------~~~-~~~~-~~-~~~s~vfv~~p~~ 314 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPII----HNQ---------------TTS-FAVH-IQ-SMDSDVFVLFPND 314 (397)
T ss_pred cchhhhhccCccceEEeecccCccccccccccc----ccc---------------ccc-ceEE-Ee-ecccceEEEEecC
Confidence 999999999999999999987664322111000 000 000 0011 12 2222334444456
Q ss_pred CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000961 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 226 g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
+.+.++++-++.. +..+..|...|.|..+.|+-+...+|+.|+.|..|-.
T Consensus 315 ~~lall~~~sgs~--ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 315 GSLALLNLLEGSF--VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CeEEEEEccCceE--EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 8889999888887 8888899899999999999999999999999999976
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2e-18 Score=191.60 Aligned_cols=264 Identities=20% Similarity=0.337 Sum_probs=200.8
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC--------CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~--------g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1208)
++..|.+.|+.++|+|..+.|++++.||+|.+|+++. -+.+.+|.+|.+||.|++..+++..+.+||.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5778999999999999999999999999999999832 25678899999999999999999999999999999
Q ss_pred EEEECCC----------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEec--CCCCEEEEEE
Q 000961 76 KVWNYKM----------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG--HNHYVMCASF 143 (1208)
Q Consensus 76 ~vWd~~~----------~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~--h~~~V~~l~~ 143 (1208)
+.|++.. ......+.||.+.|+.+++|+....|++++.||+++.|+...... .++.. ..+...++.+
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 9996541 124457789999999999999999999999999999999876655 33322 2344455655
Q ss_pred eeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe
Q 000961 144 HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1208)
Q Consensus 144 ~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs 223 (1208)
-... ++-...+..+..+++...+..... .++++... ........++-+.++|.+.+.+++.
T Consensus 448 ~ss~--~a~~~~s~~~~~~~~~~~ev~s~~-------------~~~~s~~~----~~~~~~~~in~vVs~~~~~~~~~~h 508 (577)
T KOG0642|consen 448 TSSR--PAHSLASFRFGYTSIDDMEVVSDL-------------LIFESSAS----PGPRRYPQINKVVSHPTADITFTAH 508 (577)
T ss_pred ccch--hHhhhhhcccccccchhhhhhhhe-------------eeccccCC----CcccccCccceEEecCCCCeeEecc
Confidence 4332 222222334444444332221100 00000000 0011124577889999999999999
Q ss_pred CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC
Q 000961 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 224 ~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
.|+.|+++|..+++. +.....|...++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 509 ed~~Ir~~dn~~~~~--l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKI--LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cCCceeccccccccc--chheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999997 8888999999999999999999999999999999998877766654433
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.9e-18 Score=206.68 Aligned_cols=271 Identities=15% Similarity=0.266 Sum_probs=205.5
Q ss_pred EEEEEEeCCCC-EEEEEe----------cCCeEEEEEC--CCCe----EEEEecccccCEEEEEEEcCCCE----EEEEE
Q 000961 12 VKGLSFHSKRP-WILASL----------HSGVIQLWDY--RMGT----LIDRFDEHDGPVRGVHFHKSQPL----FVSGG 70 (1208)
Q Consensus 12 V~~lafspdg~-~Lasg~----------~dg~I~iWd~--~~g~----~i~~l~~h~~~V~~l~fsp~~~~----Lasgs 70 (1208)
--.++|+|+++ ++|+|. .+.++-||.+ .+.. .+..+ .-..+-+.++|.+.+.. +|.|.
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccc
Confidence 34689999987 666653 2445566644 3332 22233 23456789999987775 88889
Q ss_pred CCCeEEEEECCCC------eEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEe--cCCCCEEEE
Q 000961 71 DDYKIKVWNYKMH------RCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVMCA 141 (1208)
Q Consensus 71 ~Dg~I~vWd~~~~------~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~--~h~~~V~~l 141 (1208)
+||.|.+||...- ..+.+...|.+.|+.+.|++... +|++|+.||.|.|||+..-+.-.+.. ...+.|.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999997641 34556778999999999999876 99999999999999998644333331 245779999
Q ss_pred EEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EE
Q 000961 142 SFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LI 219 (1208)
Q Consensus 142 ~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L 219 (1208)
+|+..- ..|++++.+|.+.|||++..+... .....+....+..++|||+.. .+
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii-------------------------~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPII-------------------------KLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCccc-------------------------ccccCCCccceeeeeeCCCCceee
Confidence 998754 678889999999999998854321 112222234578899999763 56
Q ss_pred EEEeCCC---cEEEEECCCCceeEEEeecCcCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEE
Q 000961 220 VSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWI 295 (1208)
Q Consensus 220 ~sgs~dg---~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~ 295 (1208)
++++.|. .|.+||++.... ++..+.+|...|.++.|++.+ .++++++.|+.|.+|+..+++.+..+....+.+..
T Consensus 223 ~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred eeecCCCCCceeEeecccccCC-chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 6665543 699999887554 377789999999999999966 88999999999999999999999999998899999
Q ss_pred EEEeCCCC-EEEEEE
Q 000961 296 LASHPEMN-LLAAGH 309 (1208)
Q Consensus 296 la~sp~~~-~la~g~ 309 (1208)
+.|.|... ++++.+
T Consensus 302 v~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAAS 316 (1049)
T ss_pred eeecCCCcchhhhhe
Confidence 99999776 555555
No 178
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=3.2e-17 Score=177.12 Aligned_cols=267 Identities=19% Similarity=0.302 Sum_probs=189.5
Q ss_pred EEEEeCCCCEEEEEecC---CeEEEEECCCCeEEEEecccc----cCEEEEEEEc-------CCCEEEEEECCCeEEEEE
Q 000961 14 GLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHD----GPVRGVHFHK-------SQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~----~~V~~l~fsp-------~~~~Lasgs~Dg~I~vWd 79 (1208)
.+..-|+.+.++++-.. ..+.+|=+.....- -+-.|. ..-.|++|.. .|+++|.|+.|..|.|||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 34556766677776432 34455544333211 111122 2235677743 367999999999999999
Q ss_pred CCCCe---E------------------EEEEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCC
Q 000961 80 YKMHR---C------------------LFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHY 137 (1208)
Q Consensus 80 ~~~~~---~------------------~~~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~ 137 (1208)
+.-.. + -....+|++.|..+.|+..- +.|+|||.|.+|++||+.++++..++..|.+.
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~ 288 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKK 288 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCc
Confidence 85211 0 11124689999999998765 48899999999999999999999999999999
Q ss_pred EEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC
Q 000961 138 VMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1208)
Q Consensus 138 V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 216 (1208)
|.++.|+|.. ..|++|+.|++|.+.|.+...... ..-...+.|-.++|+|..
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---------------------------~~wk~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---------------------------KEWKFDGEVEKVAWDPHS 341 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccC---------------------------ceEEeccceEEEEecCCC
Confidence 9999999965 799999999999999998522111 111235678889999865
Q ss_pred C-EEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeE--EEeecCCCC
Q 000961 217 P-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTGV--QTFRREHDR 292 (1208)
Q Consensus 217 ~-~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~-g~~l~sgs~dg~I~vwd~~~~~~~--~~~~~~~~~ 292 (1208)
. .+++++.||+|+-+|++.... ++.++..|.++|+++++++. ..++++++.|+.|++|++....+. ..-...-++
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~-~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r 420 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGK-PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR 420 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCC-ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc
Confidence 4 677888999999999998742 38899999999999999974 457889999999999998754332 211112234
Q ss_pred EEEEEEeCCCC-EEEEEE
Q 000961 293 FWILASHPEMN-LLAAGH 309 (1208)
Q Consensus 293 i~~la~sp~~~-~la~g~ 309 (1208)
..|.++.|+-. .++.|+
T Consensus 421 l~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGG 438 (463)
T ss_pred eeecccCCCcceEEEecC
Confidence 56666666654 344444
No 179
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.3e-14 Score=162.48 Aligned_cols=420 Identities=13% Similarity=0.097 Sum_probs=262.4
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcC------------CCEEEEEECCCeEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS------------QPLFVSGGDDYKIKV 77 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~------------~~~Lasgs~Dg~I~v 77 (1208)
+.-.++.|+|.| ++|.|+ ...|.|-|..+-+.++.+.-|...|+.+.|.|- ..++|++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346688999987 566665 557999999999999999999999999999762 236788888899999
Q ss_pred EECCCCeEEEEEccCCCCEEEEEEcCC---C-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CEEEE
Q 000961 78 WNYKMHRCLFTLLGHLDYIRTVQFHHE---Y-PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVS 152 (1208)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~I~~v~fs~d---~-~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s 152 (1208)
||...+..+..+..|.+++..++|-+. . ..|+......+|.+||..+|+.............|+.+.|-+ +.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 999999888889999999999999763 3 367777778899999999999999888777788889999944 66777
Q ss_pred EECCCeEEEEECCCCccccccCCCcceeecccccccc----ccccceEEEEEeccCC---CeEEEEEcCCCCEEEEEeCC
Q 000961 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF----GGVDAVVKYVLEGHDR---GVNWAAFHPTLPLIVSGADD 225 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~---~V~~l~~sp~g~~L~sgs~d 225 (1208)
.+..|.|.+-+.-......... ..+.+........ ....+........... -...++|+|.-+.++.....
T Consensus 174 l~s~g~vl~~~~l~~sep~~pg--k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPG--KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCc--eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 7778888888765544322211 1111111100000 0000000000000000 01236778877777777778
Q ss_pred CcEEEEECCCCceeEEEeecCcCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCC----------------CeeEEEee
Q 000961 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA--KQDIIVSNSEDKSIRVWDVTK----------------RTGVQTFR 287 (1208)
Q Consensus 226 g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp--~g~~l~sgs~dg~I~vwd~~~----------------~~~~~~~~ 287 (1208)
+.+.++|+.-..+..+..+. .+.+.-+.|-| +...|.+...||.+.+|-.+. +.....++
T Consensus 252 rellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr 329 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVR 329 (1062)
T ss_pred cceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEe
Confidence 88999999888774343443 44444455555 456799999999999996443 11111111
Q ss_pred cC-CCCEEEEEEeCC-CCEEEE-EECCCeeeEeeCCCcc------------------------------eEEe-------
Q 000961 288 RE-HDRFWILASHPE-MNLLAA-GHDSGMIVFKLERERP------------------------------AFAV------- 327 (1208)
Q Consensus 288 ~~-~~~i~~la~sp~-~~~la~-g~~~gi~v~~l~~~~~------------------------------~~s~------- 327 (1208)
.. .-++......|. .+.++. -+++...+|.+..++. ..+.
T Consensus 330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sG 409 (1062)
T KOG1912|consen 330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSG 409 (1062)
T ss_pred echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCC
Confidence 11 111122222222 111111 1222233333331110 0000
Q ss_pred -------------------cCC-------EEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEE
Q 000961 328 -------------------SGD-------SLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAV 380 (1208)
Q Consensus 328 -------------------~~~-------~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 380 (1208)
.++ .++++ ..|+|.++|+.++....-+.+.. + .|.++.|....+.+
T Consensus 410 s~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht----~---~VkgleW~g~sslv 482 (1062)
T KOG1912|consen 410 STCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHT----S---LVKGLEWLGNSSLV 482 (1062)
T ss_pred ceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccc----c---ceeeeeeccceeEE
Confidence 111 34444 89999999999977654444332 3 77888887665544
Q ss_pred EEEEecC-------CCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC
Q 000961 381 LICSDVD-------GGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1208)
Q Consensus 381 lv~~~~~-------~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1208)
-..+... -+.+.+-++..+..............+|+.+..|.-++|++....+.-+.+||++
T Consensus 483 Sfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 483 SFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred EeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhc
Confidence 3332211 1245566666654433322233455689999999999999999989999999985
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=4.1e-16 Score=161.71 Aligned_cols=288 Identities=18% Similarity=0.297 Sum_probs=204.6
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECCCC--------e----EEEEEc-cCCCCEEEEEEc-------CCCCEEEEEEC
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMH--------R----CLFTLL-GHLDYIRTVQFH-------HEYPWIVSASD 113 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~--------~----~~~~l~-~h~~~I~~v~fs-------~d~~~l~s~s~ 113 (1208)
..++.|+|||..|++-+.|..+.+|++... . ...+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 467889999999999999999999997421 1 111111 123456666774 67779999999
Q ss_pred CCcEEEEECCCCeEEEEEec--CCC---CEEEEEEeeCCCEEEEEECCCeEEEEEC-CCCccccccCCCcceeecccccc
Q 000961 114 DQTIRIWNWQSRTCISVLTG--HNH---YVMCASFHPKEDLVVSASLDQTVRVWDI-GALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 114 Dg~I~iwd~~s~~~i~~l~~--h~~---~V~~l~~~p~~~~l~s~s~Dg~V~vwdl-~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
+.-|++||.-+|+....+.+ |.. ...+++|+|||.+|+.|. ..+|++||+ +.++.-...+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t------------ 198 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT------------ 198 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh------------
Confidence 99999999999998877754 322 346899999999998876 789999999 44332211110
Q ss_pred ccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEE
Q 000961 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sg 266 (1208)
+..--.+..+-+.+++|+|-.. .+++|+....+-||.-..... +..+.+|.+.|+.+.|+++|+.|.+|
T Consensus 199 --------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 199 --------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred --------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc--eeeecccCCCeeeEEeccCcCeeccc
Confidence 0001233456788999999554 899999999999998888876 78888999999999999999999999
Q ss_pred eC-CCcEEEEeCCC-CeeEEEeecCCC-C--EEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEE
Q 000961 267 SE-DKSIRVWDVTK-RTGVQTFRREHD-R--FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLR 341 (1208)
Q Consensus 267 s~-dg~I~vwd~~~-~~~~~~~~~~~~-~--i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~ 341 (1208)
+. |-.|..||++. +.++..+.+|.+ . -.-....|++++|++|. .+|.|+
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~--------------------------tdG~V~ 322 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD--------------------------TDGSVR 322 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC--------------------------CCccEE
Confidence 85 56799999975 344444544433 1 11234456777777775 578899
Q ss_pred EEEccC-CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCC
Q 000961 342 YYEFST-QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIG 402 (1208)
Q Consensus 342 v~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~ 402 (1208)
+||+++ +..+...... ...+..++++|--..++++++ -++|..++...+
T Consensus 323 vwdlk~~gn~~sv~~~~-------sd~vNgvslnP~mpilatssG-----qr~f~~~~dD~g 372 (406)
T KOG2919|consen 323 VWDLKDLGNEVSVTGNY-------SDTVNGVSLNPIMPILATSSG-----QRIFKYPKDDNG 372 (406)
T ss_pred EEecCCCCCcccccccc-------cccccceecCcccceeeeccC-----ceeecCCCcccc
Confidence 999988 5543333222 227888999998666655554 245555554333
No 181
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.74 E-value=7.4e-16 Score=173.87 Aligned_cols=527 Identities=16% Similarity=0.154 Sum_probs=293.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 000961 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (1208)
Q Consensus 204 ~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~ 283 (1208)
+..++++.-+|.|..++.++.||.|.+|+........+.+ ...+-..+.|...| +++.++|..+.-|. ..|...
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~---~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq 87 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE---EAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ 87 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh---hcCCccceeeeccc--eEEEeccchhheee-ccCcch
Confidence 3456788889999999999999999999987655311222 22344456676666 67777788888886 456555
Q ss_pred EEeecC---CCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCC
Q 000961 284 QTFRRE---HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1208)
Q Consensus 284 ~~~~~~---~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1208)
+.|... ...+.++.+.|..+-++..--+|+..|+.--.+..+. +.-.+.|+....+.+-|+.++....+.+....
T Consensus 88 qqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~k-nkfe~tyv~pshvilkdlsn~trt~l~s~~g~- 165 (1636)
T KOG3616|consen 88 QQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILK-NKFELTYVAPSHVILKDLSNDTRTNLISHKGL- 165 (1636)
T ss_pred hhccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHh-ccceeEEeccceeeeecccCCceEeeeecCCc-
Confidence 555533 2357788888876655543344544443322221110 11123444667788888888777665544321
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCccc-ccccCC-----ceEEEEEEeCCcEEEEEcCCC
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV-QDAKKG-----LGGSAIFIARNRFAVLDKSSN 434 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~-~~~~~~-----~i~~~~fs~d~~~l~~~~~dg 434 (1208)
.|..+..-...++++..++ .++.+-++..+...++... ..+|.. .-.|+.|....-.++--+.|+
T Consensus 166 ------aidelkilgkdryli~~ts---~siii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~nageltlveyg~d~ 236 (1636)
T KOG3616|consen 166 ------AIDELKILGKDRYLIAHTS---ESIIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNAGELTLVEYGNDD 236 (1636)
T ss_pred ------chhhhhhccccceEEeecc---ccEEEeecccchhhhhhcccCCCcceeeeecCcEEEEEecCeeEEEEecCCC
Confidence 3444444445566655444 4566666665544333211 112211 111222222111122111122
Q ss_pred EEEEEecC--CceeeeecCCcc-------------eEEEEE---eCCccEEEEeC-------------------------
Q 000961 435 QVLVKNLK--NEVVKKSILPIA-------------ADAIFY---AGTGNLLCRAE------------------------- 471 (1208)
Q Consensus 435 ~I~Iwdl~--~~~~~~l~~~~~-------------v~~i~~---s~dg~~Las~d------------------------- 471 (1208)
++--.... +..+.+++.... -..++. -..|++.+.+|
T Consensus 237 slg~vrte~~nphlisvqike~~qksygrnfdse~n~~~a~~~di~tgqicvfsdflqrrtssvffiikakakifndlql 316 (1636)
T KOG3616|consen 237 SLGSVRTEFMNPHLISVQIKEACQKSYGRNFDSEDNKKLAEHIDIKTGQICVFSDFLQRRTSSVFFIIKAKAKIFNDLQL 316 (1636)
T ss_pred cchhhhhhhcCceeeehHHHHHHHHhhCCCCCcchhhhHHHHhccccCceeeehhhhhhccccceeeehhhhhhcccccC
Confidence 21110000 111111100000 000000 00122222211
Q ss_pred CeEEE-EEcCCCeEEEEEeC-CCeeEEEECCCCCEEEEEeCCe-EEEEecCccceeeeecceeeeeeEEec-CCeEEEec
Q 000961 472 DRVVI-FDLQQRLVLGDLQT-PFVKYVVWSNDMESVALLSKHA-IIIASKKLVHQCTLHETIRVKSGAWDD-NGVFIYTT 547 (1208)
Q Consensus 472 g~v~l-wdl~~~~~l~~~~~-~~v~~v~ws~dg~~la~~s~~~-i~i~~~~~~~~~~~~e~~~iks~~wd~-~~~~iy~t 547 (1208)
-.|.+ -|+-.|+....+.. +.|..+-.+..+..+..-++.. +.+++....+...+-... .-..|.. +++++-..
T Consensus 317 phi~ipvdli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmilnfc--symqwvp~sdvivaqn 394 (1636)
T KOG3616|consen 317 PHIAIPVDLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILNFC--SYMQWVPGSDVIVAQN 394 (1636)
T ss_pred cceeeeeecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHHHHh--hhheeccCcceEEecC
Confidence 01111 23333333333332 3444444455555444444332 555554433322221110 1235653 34444444
Q ss_pred CCeeeeEecCCceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEcChhhHHHHHhhcccccccchHHHHHHHhCCChh
Q 000961 548 LNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQLCGQAMIAYLQQKGFPE 627 (1208)
Q Consensus 548 ~~~i~y~l~~g~~g~i~~l~~~~~l~~~~~~~l~~l~r~~~~~~~~ld~~e~~~~l~~i~~~~~~~~~i~~yl~~~g~~e 627 (1208)
.+.+...+ |-+ .+..+..+++++...-+....++...+ .+.|-..
T Consensus 395 ~dnl~iwy-n~d------~peqvt~~kikgdv~~l~r~~~ktevi----------------------------v~e~tak 439 (1636)
T KOG3616|consen 395 GDNLCIWY-NID------APEQVTMFKIKGDVEALERDADKTEVI----------------------------VMEGTAK 439 (1636)
T ss_pred CCceEEEe-cCC------cchhheeeEecccchhhhcCCCceeEE----------------------------Eeeccee
Confidence 44333322 111 122223334444433222212222222 2223334
Q ss_pred hhhccccCcchhhHHHHhcCCHHHHHHHHHHhCC----hhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCC
Q 000961 628 VALHFVKDERTRFNLALESGNIQIAVASAKEIDE----KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGN 703 (1208)
Q Consensus 628 ~Al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~ 703 (1208)
+|++ +++....|..|++.||+++|..+...+.. ..+|.+|++.||+.||+-+|++||..+++..++.||
T Consensus 440 vaye-ld~~~iefgaaid~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~l------ 512 (1636)
T KOG3616|consen 440 VAYE-LDEGLIEFGAAIDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFL------ 512 (1636)
T ss_pred EEEE-ecCcceecccccccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH------
Confidence 4554 34566789999999999999999887643 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHcCCc----hhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCCCCCC
Q 000961 704 MDKLSKMLKIA--EVKNDV----MGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPSVP 777 (1208)
Q Consensus 704 ~~kl~k~~~~~--~~~~~~----~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~~~~~ 777 (1208)
..+..++..+ +.-|+- ..++..++.-.+|++|+.+|++.+.-+.|+-|+.+++.|++|..+++.
T Consensus 513 -hd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~--------- 582 (1636)
T KOG3616|consen 513 -HDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEA--------- 582 (1636)
T ss_pred -HHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHh---------
Confidence 3333343322 233443 334556777899999999999999999999999999999999999996
Q ss_pred CCCCCCcCCCCCcccCCCCCCcccccccccccccccCCCCC
Q 000961 778 EGKAPSLLMPPSPVVCSGDWPLLRVMKGIFEGGLDNIGRGA 818 (1208)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~~~~~~~~~~ 818 (1208)
.|+|.++..+..|.++|+++||.+
T Consensus 583 -----------------~~~p~~eklk~sy~q~l~dt~qd~ 606 (1636)
T KOG3616|consen 583 -----------------KGHPALEKLKRSYLQALMDTGQDE 606 (1636)
T ss_pred -----------------cCChHHHHHHHHHHHHHHhcCchh
Confidence 789999999999999999999865
No 182
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=164.49 Aligned_cols=404 Identities=12% Similarity=0.071 Sum_probs=238.6
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEE-EECCCeEEEEECCCCeEEEEEccC
Q 000961 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDYKIKVWNYKMHRCLFTLLGH 92 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg~I~vWd~~~~~~~~~l~~h 92 (1208)
-++|||+|+|+|+.+.- .+.|-|..+-+..+.|.- -..|..+.|..+.-+++. ...|+.|.+|++...+....+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46899999999998654 788889888776665543 456888999988876555 467889999999999888899888
Q ss_pred CCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcccc
Q 000961 93 LDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKT 171 (1208)
Q Consensus 93 ~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~ 171 (1208)
.+++..++|||||+ .|.+..-|-.|.+|.+.+.+....- -....+..++|+|+|++.+.++.-......++...+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~--- 166 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK--- 166 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeecccHHHHHHHHhhH---
Confidence 99999999999996 4556667889999999887664432 233456889999999998888753211111111000
Q ss_pred ccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCe
Q 000961 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNV 251 (1208)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V 251 (1208)
+..+...+.-.+-..+.+.|+|||..|++ ||.--.-. +.. ....-.+
T Consensus 167 ---------------------~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leyk--v~a-Ye~~lG~ 213 (447)
T KOG4497|consen 167 ---------------------AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYK--VYA-YERGLGL 213 (447)
T ss_pred ---------------------HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhhe--eee-eeeccce
Confidence 00011122223445677999999988775 43221111 111 1112357
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCE
Q 000961 252 SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDS 331 (1208)
Q Consensus 252 ~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~ 331 (1208)
..+.|+|.+++|++|+.|+.+||.+--+.+....+-. . ++-++....+..-+...+..-.. .-
T Consensus 214 k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh-l---------------~s~~dp~~~~~~ke~~~~~ql~~-~c 276 (447)
T KOG4497|consen 214 KFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH-L---------------CSYHDPTLHLLEKETFSIVQLLH-HC 276 (447)
T ss_pred eEEEeccccceEEeeccchhhhhhceeeeeehhhhcc-c---------------hhccCchhhhhhhhhcchhhhcc-cc
Confidence 7899999999999999999999987655544433221 0 01111110000000000000000 00
Q ss_pred EEEE-eCCeEEEEEccCC------cceeeEeecC---CCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC
Q 000961 332 LFYA-KDRFLRYYEFSTQ------KDTQVIPIRR---PGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI 401 (1208)
Q Consensus 332 L~~~-~d~~i~v~d~~~~------~~~~~~~~~~---~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~ 401 (1208)
|-+. .+-....|..... ..+.+..++. ... + .-.+.-++||+|..+++.-.+...+.+.+|++.....
T Consensus 277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn-P-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l 354 (447)
T KOG4497|consen 277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN-P-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL 354 (447)
T ss_pred cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC-c-ccccceeeecCCceEEeeecCCCCceEEEEechhhhh
Confidence 0000 1111112211100 0000111110 000 1 2267779999999998877776778899999986543
Q ss_pred CCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEEEEeCCeEEEEEcCC
Q 000961 402 GRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQ 481 (1208)
Q Consensus 402 ~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las~dg~v~lwdl~~ 481 (1208)
-.++ ....+|....|.|...-++.......+++|...+......+.++
T Consensus 355 ~avL----iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~G---------------------------- 402 (447)
T KOG4497|consen 355 HAVL----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKG---------------------------- 402 (447)
T ss_pred hhhh----hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCC----------------------------
Confidence 3222 33456777888777654544443445566654432111111111
Q ss_pred CeEEEEEeCCCeeEEEECCCCCEEEEEeCCeEEEE
Q 000961 482 RLVLGDLQTPFVKYVVWSNDMESVALLSKHAIIIA 516 (1208)
Q Consensus 482 ~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i~ 516 (1208)
-.|..+.|..+|..++..++|.+.+.
T Consensus 403 ---------F~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 403 ---------FNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred ---------ceeeeEEecCCCcEEEEEcCCceEEE
Confidence 24677888888888888888876553
No 183
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.74 E-value=1.7e-12 Score=164.78 Aligned_cols=508 Identities=14% Similarity=0.157 Sum_probs=297.8
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEE----ECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC--
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLW----DYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK-- 81 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iW----d~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~-- 81 (1208)
..+.|.++.|-++..-++.+..+|.|.+. +..+. .+.....-+..|.+++||||+.+|+..+.++++.+-+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 45789999999999999999999999999 54332 223333457789999999999999999999998876421
Q ss_pred -------------C--------CeEEEEEcc------------------------CCCCEEEEEEcCCCCEEEEEEC---
Q 000961 82 -------------M--------HRCLFTLLG------------------------HLDYIRTVQFHHEYPWIVSASD--- 113 (1208)
Q Consensus 82 -------------~--------~~~~~~l~~------------------------h~~~I~~v~fs~d~~~l~s~s~--- 113 (1208)
. |+.-..|+| +.+.-..++|-.||.++++.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 0 000001100 2334567899999999998775
Q ss_pred C---CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC---CCeEEEEECCCCccccccCCCcceeecccccc
Q 000961 114 D---QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL---DQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 114 D---g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
. ..||||+- .|....+-..-.+--.+++|-|.|++|++... ...|.+|.-++.+...
T Consensus 233 ~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge---------------- 295 (928)
T PF04762_consen 233 TGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE---------------- 295 (928)
T ss_pred CCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee----------------
Confidence 2 57999994 47665555444444567899999999998764 4567788877655332
Q ss_pred ccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCc-CCCeEEEEEccC-CCEEEE
Q 000961 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH-MNNVSCVMFHAK-QDIIVS 265 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h-~~~V~~l~~sp~-g~~l~s 265 (1208)
....+......|..+.|++++..|++...|. |.+|-..+-.....+.+.-. ...+..+.|+|. ...|..
T Consensus 296 --------F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 296 --------FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred --------EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence 1112234566789999999999999987666 99999988775434444422 334556999995 445777
Q ss_pred EeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEc
Q 000961 266 NSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEF 345 (1208)
Q Consensus 266 gs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~ 345 (1208)
.+.+|.+..+++. |.+..++... ..+. ..+++....++.+-.+
T Consensus 367 ~t~~g~~~~~~~~---------------~~v~~s~~~~----~~D~------------------g~vaVIDG~~lllTpf 409 (928)
T PF04762_consen 367 LTSNGQYEIYDFA---------------WDVSRSPGSS----PNDN------------------GTVAVIDGNKLLLTPF 409 (928)
T ss_pred EecCCcEEEEEEE---------------EEEEecCCCC----ccCc------------------eEEEEEeCCeEEEecc
Confidence 7776777766542 1222221100 0000 1111113455556665
Q ss_pred cCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCC-----ccc----------ccc
Q 000961 346 STQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRG-----DSV----------QDA 410 (1208)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~-----~~~----------~~~ 410 (1208)
...-..|.+......- ..+|..++|++++..+++... +|.+.+|.......... ... ...
T Consensus 410 ~~a~VPPPMs~~~l~~---~~~v~~vaf~~~~~~~avl~~--d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (928)
T PF04762_consen 410 RRAVVPPPMSSYELEL---PSPVNDVAFSPSNSRFAVLTS--DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSEL 484 (928)
T ss_pred cccCCCchHhceEEcC---CCCcEEEEEeCCCCeEEEEEC--CCCEEEEEecCCCcccccCcchhhhccccccccccccc
Confidence 5543333222222111 238999999999876555443 57899998655432210 000 112
Q ss_pred cCCceEEEEEEeCCcEEEEEcCC---CEEEEEecC-Cc---eeee-ecCCcceEEEEEeCCcc--EEEEeCCeEEEEEcC
Q 000961 411 KKGLGGSAIFIARNRFAVLDKSS---NQVLVKNLK-NE---VVKK-SILPIAADAIFYAGTGN--LLCRAEDRVVIFDLQ 480 (1208)
Q Consensus 411 ~~~~i~~~~fs~d~~~l~~~~~d---g~I~Iwdl~-~~---~~~~-l~~~~~v~~i~~s~dg~--~Las~dg~v~lwdl~ 480 (1208)
.......++|..++.+++....+ ..+.++++. .. .... ...+..+..+...++.. ++-+.+|.+..++..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~ 564 (928)
T PF04762_consen 485 PLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSD 564 (928)
T ss_pred ccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecC
Confidence 23457889999998877776644 568888874 21 1112 22222455555555543 233458888877665
Q ss_pred CCeEE-EEEeC-CCeeEEEECCCCC---EEEEEeCCe-EEEEecCccceeeeecceeeeeeEEecCCeEEEecCCe-eee
Q 000961 481 QRLVL-GDLQT-PFVKYVVWSNDME---SVALLSKHA-IIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNH-IKY 553 (1208)
Q Consensus 481 ~~~~l-~~~~~-~~v~~v~ws~dg~---~la~~s~~~-i~i~~~~~~~~~~~~e~~~iks~~wd~~~~~iy~t~~~-i~y 553 (1208)
..... ..+.. ..-..+....+.. .++..+..+ +|+ +. ..+. ..+.|... .+..++|+|.+| +++
T Consensus 565 ~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~-n~--~~la-----~~~tSF~v-~~~~Ll~TT~~h~l~f 635 (928)
T PF04762_consen 565 GELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA-NS--RLLA-----SNCTSFAV-TDSFLLFTTTQHTLKF 635 (928)
T ss_pred CCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE-CC--EEEe-----cCCceEEE-EcCEEEEEecCceEEE
Confidence 44322 22222 1112222222222 344444433 443 11 1111 11223333 456889999987 454
Q ss_pred EecC----------Cc-----eeEEEeccccEEEEEE--eCCEEEEEecCCceEEEE
Q 000961 554 CLPN----------GD-----SGIIRTLDVPIYITKV--SGNTIFCLDRDGKNRAIV 593 (1208)
Q Consensus 554 ~l~~----------g~-----~g~i~~l~~~~~l~~~--~~~~l~~l~r~~~~~~~~ 593 (1208)
.=.+ +. -..+|.++..-.++.+ ...+|.+.+.-|++..+.
T Consensus 636 v~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~ 692 (928)
T PF04762_consen 636 VHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLETIY 692 (928)
T ss_pred EECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchhhhc
Confidence 4222 01 1135666665556555 445788888777776654
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=9.9e-17 Score=162.08 Aligned_cols=248 Identities=14% Similarity=0.283 Sum_probs=194.6
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEec-ccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
..|++|++.|+++.|..++. |.+|...|.|++|++.+.+....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 35779999999999998775 8899999999999999998888888 67888999988887 568888999999999986
Q ss_pred CCeEE--------------EEEc---------------------------------------cCCCCEEEEEEcC-CCC-
Q 000961 82 MHRCL--------------FTLL---------------------------------------GHLDYIRTVQFHH-EYP- 106 (1208)
Q Consensus 82 ~~~~~--------------~~l~---------------------------------------~h~~~I~~v~fs~-d~~- 106 (1208)
-+..+ +.+. +..+.+.+..+.. ++.
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 42211 1110 1123344444322 222
Q ss_pred -EEEEEECCCcEEEEECCCCeE----------EEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCC
Q 000961 107 -WIVSASDDQTIRIWNWQSRTC----------ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPA 175 (1208)
Q Consensus 107 -~l~s~s~Dg~I~iwd~~s~~~----------i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~ 175 (1208)
+++.|..+|.+.+||+.++.. +.....|..+|+++.+.+.-+.=++|+.+..+..|++.......
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl---- 241 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL---- 241 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc----
Confidence 567888899999999998733 33345689999999999876667788888889999886521111
Q ss_pred CcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEE
Q 000961 176 DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255 (1208)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~ 255 (1208)
.......-...+|..+.+-||++.+++++.|+.|++|+.++... +..+.-|...|.+++
T Consensus 242 -------------------q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 242 -------------------QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVA 300 (323)
T ss_pred -------------------cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEE
Confidence 01123444567889999999999999999999999999999987 778889999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeC
Q 000961 256 FHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 256 ~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
|+|+.+++++++.|+.|.+|++
T Consensus 301 fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999986
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=3.7e-16 Score=166.12 Aligned_cols=230 Identities=16% Similarity=0.276 Sum_probs=181.4
Q ss_pred EeecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCC-------eEEEEecccccCEEEEEEEcCC-CEEEEEECCCe
Q 000961 4 KFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYK 74 (1208)
Q Consensus 4 ~l~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g-------~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~ 74 (1208)
.+.||.++|..++|+| +...||+|+.|.+|.||.+..+ +.+..+.+|...|-.++|||.- +.|+++|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 6678899999999999998655 3456778999999999999964 58899999999
Q ss_pred EEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-CEEEEEEeeCCCEEEEE
Q 000961 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH-YVMCASFHPKEDLVVSA 153 (1208)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~-~V~~l~~~p~~~~l~s~ 153 (1208)
|.+||+.+|+.+.++. |.+-|.++.|+.||.+|++++.|..|||||.++++.+..-.+|.+ .-..+.|..++..+-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999999988 999999999999999999999999999999999999998877765 35567788888855555
Q ss_pred E---CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEE
Q 000961 154 S---LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVK 229 (1208)
Q Consensus 154 s---~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~ 229 (1208)
. .+..+-+||....+... .. .--....+|.---|.|+.+.+..++ .|+.|+
T Consensus 235 fsr~seRq~aLwdp~nl~eP~------------------------~~-~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPI------------------------AL-QELDTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred cccccccceeccCcccccCcc------------------------ee-EEeccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 3 46789999987755331 11 1223445677777888888776554 699999
Q ss_pred EEECCCCceeEEEeec--CcCCCeEEEEEccCC
Q 000961 230 LWRMNETKAWEVDTLR--GHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~--~h~~~V~~l~~sp~g 260 (1208)
-|.+...... ++.+. ....+-..+.|.|..
T Consensus 290 YyEit~d~P~-~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 290 YFEITNEPPF-VHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred EEEecCCCce-eEEecccccCCccccccccccc
Confidence 9999887742 22222 123345566776654
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=7e-16 Score=157.65 Aligned_cols=257 Identities=20% Similarity=0.358 Sum_probs=192.2
Q ss_pred CEEEEEec----CCeEEEEECCCCe--E-EEEecccccCEEEEEEEcCCC-EEEEEECC-------CeEEEEECCCC---
Q 000961 22 PWILASLH----SGVIQLWDYRMGT--L-IDRFDEHDGPVRGVHFHKSQP-LFVSGGDD-------YKIKVWNYKMH--- 83 (1208)
Q Consensus 22 ~~Lasg~~----dg~I~iWd~~~g~--~-i~~l~~h~~~V~~l~fsp~~~-~Lasgs~D-------g~I~vWd~~~~--- 83 (1208)
-.+++|.. ++.|.+.++..+. + -..|..|.+.|..++-+|..+ .|+|+..+ ..+.||.+...
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc
Confidence 34556643 5778887765442 2 245667889999999999655 56665432 35789988632
Q ss_pred ------eEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEEe-----cCCCCEEEEEEee--CCC
Q 000961 84 ------RCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLT-----GHNHYVMCASFHP--KED 148 (1208)
Q Consensus 84 ------~~~~~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-i~~l~-----~h~~~V~~l~~~p--~~~ 148 (1208)
+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. .|....++.+|+| +++
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 2333343 4556899999999999988876 88999999987665 33332 3567788999999 567
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCc
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQ 227 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~ 227 (1208)
.+++.+ |++++.||+++.++.. ..-..|...|..+.|+|+.+ +|++|++||.
T Consensus 186 qv~tt~-d~tl~~~D~RT~~~~~--------------------------sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy 238 (370)
T KOG1007|consen 186 QVATTS-DSTLQFWDLRTMKKNN--------------------------SIEDAHGQRVRDLDFNPNKQHILVTCGDDGY 238 (370)
T ss_pred eEEEeC-CCcEEEEEccchhhhc--------------------------chhhhhcceeeeccCCCCceEEEEEcCCCcc
Confidence 777665 8999999999755432 14456888899999999865 6788999999
Q ss_pred EEEEECCCCceeEEEeecCcCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCC--------------------------
Q 000961 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKR-------------------------- 280 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~-g~~l~sgs~dg~I~vwd~~~~-------------------------- 280 (1208)
|++||.+..+. ++..+.+|...|+++.|+|. .++|++|+.|..|.+|...+-
T Consensus 239 vriWD~R~tk~-pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp 317 (370)
T KOG1007|consen 239 VRIWDTRKTKF-PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP 317 (370)
T ss_pred EEEEeccCCCc-cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence 99999998775 58999999999999999994 578899999999999965321
Q ss_pred ---eeEEEeecCCCCEEEEEEeCCCCEEEE
Q 000961 281 ---TGVQTFRREHDRFWILASHPEMNLLAA 307 (1208)
Q Consensus 281 ---~~~~~~~~~~~~i~~la~sp~~~~la~ 307 (1208)
..+.++..|.+.|++++||.-...+.+
T Consensus 318 L~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 318 LQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred ccccccccccccccceEEEeeccCCCeeEE
Confidence 123456778888999999986665543
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=3.6e-16 Score=159.77 Aligned_cols=247 Identities=19% Similarity=0.279 Sum_probs=189.7
Q ss_pred EeecCCCCEEEEEEeCC-CCEEEEEecC-------CeEEEEECCCC---------eEEEEec-ccccCEEEEEEEcCCCE
Q 000961 4 KFETKSNRVKGLSFHSK-RPWILASLHS-------GVIQLWDYRMG---------TLIDRFD-EHDGPVRGVHFHKSQPL 65 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspd-g~~Lasg~~d-------g~I~iWd~~~g---------~~i~~l~-~h~~~V~~l~fsp~~~~ 65 (1208)
.|..|.+.|..++-+|- .+.|+++..+ -.+.||.+... +++..+. .+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 46778999999999994 4555555331 24789987532 3344454 57789999999999999
Q ss_pred EEEEECCCeEEEEECCCCeE-EEEE-----ccCCCCEEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCC
Q 000961 66 FVSGGDDYKIKVWNYKMHRC-LFTL-----LGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNH 136 (1208)
Q Consensus 66 Lasgs~Dg~I~vWd~~~~~~-~~~l-----~~h~~~I~~v~fs~--d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~~h~~ 136 (1208)
+++-. |..|.+|++..+.. +..+ .+|....++-+|+| +++.+++.+ |+++..||+++.++...+ ..|..
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq 215 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQ 215 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcc
Confidence 98876 67999999987765 3333 23566788889998 677777654 889999999988877666 47889
Q ss_pred CEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 137 YVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 137 ~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
.|..+.|+|+. .+|++|+.||.|++||.+..+.. ...+.+|...|+++.|+|.
T Consensus 216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p--------------------------v~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP--------------------------VQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred eeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc--------------------------ccccCCCceEEEEEEecCc
Confidence 99999999987 57889999999999999874432 3367899999999999995
Q ss_pred -CCEEEEEeCCCcEEEEECCCCce---------------------------eEEEeecCcCCCeEEEEEccCCC-EEEEE
Q 000961 216 -LPLIVSGADDRQVKLWRMNETKA---------------------------WEVDTLRGHMNNVSCVMFHAKQD-IIVSN 266 (1208)
Q Consensus 216 -g~~L~sgs~dg~I~iwd~~~~~~---------------------------~~~~~l~~h~~~V~~l~~sp~g~-~l~sg 266 (1208)
.++|++|+.|..|.+|....-.. -.+.++..|...|++++|+.-.. .+++-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 45788999999999996543110 01345667999999999998555 46778
Q ss_pred eCCCcEEEEeCC
Q 000961 267 SEDKSIRVWDVT 278 (1208)
Q Consensus 267 s~dg~I~vwd~~ 278 (1208)
+.||.+.|=.+.
T Consensus 350 SYDGRviIs~V~ 361 (370)
T KOG1007|consen 350 SYDGRVIISSVP 361 (370)
T ss_pred ccCceEEeecCC
Confidence 999999886654
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.3e-15 Score=160.83 Aligned_cols=284 Identities=11% Similarity=0.166 Sum_probs=207.7
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECC------CCeEEEEec-ccccCEEEEEEEcCCCEEEEEECCCeEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYR------MGTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~------~g~~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~ 76 (1208)
.+.+|.+-|.++.||.+++||++|+.|..++||++. +.+.+.... .|...|.|++|...+..+.+|+.+++|+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 356899999999999999999999999999999974 334555443 4668999999999999999999999999
Q ss_pred EEECCCCeEEEEEcc--CCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe-EEE--EEecCCCCEEEEEEeeCC-CEE
Q 000961 77 VWNYKMHRCLFTLLG--HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CIS--VLTGHNHYVMCASFHPKE-DLV 150 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~--h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~-~i~--~l~~h~~~V~~l~~~p~~-~~l 150 (1208)
.-|+++.+.+..+.. ..+.|..+..+|..+.+++.+.++.|.+||.+... .+. ..........++.|+|.. .+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999988877652 23489999999999999999999999999998654 222 222334567889999976 788
Q ss_pred EEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 000961 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230 (1208)
Q Consensus 151 ~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~i 230 (1208)
++.+..+-+-+||++.......... ....+......-..+.|+|+|..+++--....-.+
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~--------------------~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRS--------------------MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY 270 (609)
T ss_pred EeccccCCCCceeeccccchHHhhh--------------------ccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence 8899999999999986443221100 00011111223356789999999988776666678
Q ss_pred EECCCCceeEEEeec-Cc-----CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----------------------e
Q 000961 231 WRMNETKAWEVDTLR-GH-----MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR-----------------------T 281 (1208)
Q Consensus 231 wd~~~~~~~~~~~l~-~h-----~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~-----------------------~ 281 (1208)
||+.+..+. +.... .. ...+.+++|..+.. +++|+.+-.|++|.+... .
T Consensus 271 ~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 271 FDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred eeeecccce-eEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 888876653 22222 11 12466778876544 999999999999987531 1
Q ss_pred eEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 282 GVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 282 ~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
.+..+++|..-+..+.|+|..++|++.+
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSG 376 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQHNNLLVSSG 376 (609)
T ss_pred eeEEEecccccccceeecCCcceEeccc
Confidence 2334566666677777777777666544
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.6e-15 Score=178.49 Aligned_cols=276 Identities=21% Similarity=0.337 Sum_probs=204.9
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEeccc---ccCEEEEEEEc--CCCEEEEEECCCeEEEEEC-CC
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEH---DGPVRGVHFHK--SQPLFVSGGDDYKIKVWNY-KM 82 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h---~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd~-~~ 82 (1208)
...-+.+.|||-.+.++++...-.|+|||++.++.+..|..+ ...|+.+.+-. |..++++|+.||.|+||+- .+
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 445678899999999999988889999999999999888654 45688888854 4458999999999999963 22
Q ss_pred ----CeEEEEEccC-------CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCEEEEEEee-CCCE
Q 000961 83 ----HRCLFTLLGH-------LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHP-KEDL 149 (1208)
Q Consensus 83 ----~~~~~~l~~h-------~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~-~h~~~V~~l~~~p-~~~~ 149 (1208)
.+.+..+.+- .+.=.-+.|.....+|+++++-..|+|||.....++..+. +.+..|+++.-+- .|+.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 2344333221 1111446788877788888888999999998887777664 3445566665543 4699
Q ss_pred EEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCC--eEEEEEcCCCCE-EEEEeCCC
Q 000961 150 VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG--VNWAAFHPTLPL-IVSGADDR 226 (1208)
Q Consensus 150 l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp~g~~-L~sgs~dg 226 (1208)
++.|..||.|++||.+...... .......|... |..+.+.+.|-. |++|+.+|
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds------------------------~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDS------------------------LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred EEEeecCCceEEeecccCCccc------------------------cceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 9999999999999987633221 22345567666 999999987654 99999999
Q ss_pred cEEEEECCCCceeEEEeecCcC--C-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC-------CCCEEEE
Q 000961 227 QVKLWRMNETKAWEVDTLRGHM--N-NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-------HDRFWIL 296 (1208)
Q Consensus 227 ~I~iwd~~~~~~~~~~~l~~h~--~-~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-------~~~i~~l 296 (1208)
.|++||++........+...|. + ..+++..|++...+|+|+. +.|.||++. |+.+..++.. .+.+.++
T Consensus 1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCL 1357 (1387)
T ss_pred eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCccee
Confidence 9999999984321122233332 3 5999999999999999998 899999975 5555444422 2457899
Q ss_pred EEeCCCCEEEEEEC
Q 000961 297 ASHPEMNLLAAGHD 310 (1208)
Q Consensus 297 a~sp~~~~la~g~~ 310 (1208)
+|||-.-++|+|..
T Consensus 1358 ~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1358 AFHPHRLLLAAGSA 1371 (1387)
T ss_pred eecchhHhhhhccC
Confidence 99999999999964
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=1.9e-15 Score=154.71 Aligned_cols=276 Identities=16% Similarity=0.243 Sum_probs=201.8
Q ss_pred CEEEEEEeC---CCCEEEEEec----CCeEEEEEC--CCCeEEEEe-cccccCEEEEEEEcCCC-----EEEEEECCCeE
Q 000961 11 RVKGLSFHS---KRPWILASLH----SGVIQLWDY--RMGTLIDRF-DEHDGPVRGVHFHKSQP-----LFVSGGDDYKI 75 (1208)
Q Consensus 11 ~V~~lafsp---dg~~Lasg~~----dg~I~iWd~--~~g~~i~~l-~~h~~~V~~l~fsp~~~-----~Lasgs~Dg~I 75 (1208)
.+.++.||. .+.+||.|+. ++.|+|-.+ .+++.+..- -.|.-|++.+.|.|+.. +|||.++ .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eE
Confidence 567888984 3458888864 456776654 345554332 26999999999999873 6777665 89
Q ss_pred EEEECCC--CeE--EEEE-----ccCCCCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCe---EEEEEecCCCCEEEEE
Q 000961 76 KVWNYKM--HRC--LFTL-----LGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRT---CISVLTGHNHYVMCAS 142 (1208)
Q Consensus 76 ~vWd~~~--~~~--~~~l-----~~h~~~I~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s~~---~i~~l~~h~~~V~~l~ 142 (1208)
++|.+.. .+. ...+ ..+..++++..|+.- -++|.++|-|-+..|||++++. ....+-.|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9999873 221 1111 235678999999874 4588899999999999999863 3556778999999999
Q ss_pred EeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-CEEE
Q 000961 143 FHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIV 220 (1208)
Q Consensus 143 ~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~L~ 220 (1208)
|...+ +.+++.+.||.||+||++....... .+.-.....+...++|++.. ++++
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTI------------------------IYE~p~~~~pLlRLswnkqDpnymA 259 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTI------------------------IYEDPSPSTPLLRLSWNKQDPNYMA 259 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceE------------------------EecCCCCCCcceeeccCcCCchHHh
Confidence 99865 7899999999999999998664332 12222224567788998854 4566
Q ss_pred EEeC-CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCee------EEEeecCCCC
Q 000961 221 SGAD-DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTG------VQTFRREHDR 292 (1208)
Q Consensus 221 sgs~-dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~-g~~l~sgs~dg~I~vwd~~~~~~------~~~~~~~~~~ 292 (1208)
+-.. ...|.+.|++.... ++..+++|.+.|..++|.|. ...|.+++.|..+.+||+...-. +-.+. ..+.
T Consensus 260 Tf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~E 337 (364)
T KOG0290|consen 260 TFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGE 337 (364)
T ss_pred hhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccce
Confidence 5544 45799999987654 48899999999999999995 57899999999999999875322 11122 4567
Q ss_pred EEEEEEeC-CCCEEEEEECCCee
Q 000961 293 FWILASHP-EMNLLAAGHDSGMI 314 (1208)
Q Consensus 293 i~~la~sp-~~~~la~g~~~gi~ 314 (1208)
|..+.|++ ....++.+.++.+-
T Consensus 338 VNqi~Ws~~~~Dwiai~~~kkle 360 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICFGKKLE 360 (364)
T ss_pred eeeeeecccCCCEEEEEecCeee
Confidence 89999996 55677777665543
No 191
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=9.2e-16 Score=159.22 Aligned_cols=217 Identities=14% Similarity=0.225 Sum_probs=150.4
Q ss_pred EEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCeEEEEEecC
Q 000961 56 GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVS-ASDDQTIRIWNWQSRTCISVLTGH 134 (1208)
Q Consensus 56 ~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s-~s~Dg~I~iwd~~s~~~i~~l~~h 134 (1208)
-.+|||+|+++|+.+.- .+.|-|..+-+..+.+. --+.|..+.|..|..++++ .+.|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999875 78888877765444333 2467888999998886665 466889999999988888888888
Q ss_pred CCCEEEEEEeeCCCE-EEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEc
Q 000961 135 NHYVMCASFHPKEDL-VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (1208)
Q Consensus 135 ~~~V~~l~~~p~~~~-l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (1208)
...+.+++|+|+|+. |.+..-+-.|.||.+.+.+.. .+......+..++|+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~----------------------------~~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY----------------------------LLPHPKTNVKGYAFH 142 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE----------------------------EecccccCceeEEEC
Confidence 889999999999955 455666889999999874322 222233456889999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeE-EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCC
Q 000961 214 PTLPLIVSGADDRQVKLWRMNETKAWE-VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR 292 (1208)
Q Consensus 214 p~g~~L~sgs~dg~I~iwd~~~~~~~~-~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 292 (1208)
|+|++.+..+.-.....+++..-+.|. +..+...+-..+.+.|+|||+.|++ ||..-.-.+..+. -.-.
T Consensus 143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe-~~lG 212 (447)
T KOG4497|consen 143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLG 212 (447)
T ss_pred CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee-eccc
Confidence 999998887753222222222222211 2334444556788999999987665 4422111111111 1235
Q ss_pred EEEEEEeCCCCEEEEEECCC
Q 000961 293 FWILASHPEMNLLAAGHDSG 312 (1208)
Q Consensus 293 i~~la~sp~~~~la~g~~~g 312 (1208)
+..++|+|.++++++|+.++
T Consensus 213 ~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred eeEEEeccccceEEeeccch
Confidence 77899999999999998654
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.2e-16 Score=175.52 Aligned_cols=238 Identities=23% Similarity=0.289 Sum_probs=178.2
Q ss_pred EecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC--------CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcE
Q 000961 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK--------MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTI 117 (1208)
Q Consensus 46 ~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~--------~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I 117 (1208)
++..|...|+.+.|+|..+.|++++.||++++|+++ .-+++.++.+|.++|.|+++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 556799999999999999999999999999999993 235788999999999999999999999999999999
Q ss_pred EEEECCCC----------eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeecccccc
Q 000961 118 RIWNWQSR----------TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 118 ~iwd~~s~----------~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
+.|++... .....+.||.+.|+.+++|+..+.|++++.||+|+.|+.........
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f--------------- 433 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTF--------------- 433 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcccc---------------
Confidence 99966421 33457789999999999999999999999999999999876443110
Q ss_pred ccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeec-----CcCCCeEEEEEccCCC
Q 000961 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLR-----GHMNNVSCVMFHAKQD 261 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~~~~~l~-----~h~~~V~~l~~sp~g~ 261 (1208)
+ ....| +--.++.+-.... ..++...-+.-.++++.......+.... .....+.-+.++|.+.
T Consensus 434 --~--------~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 434 --G--------EPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred --C--------Ccccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 0 00011 1112333322221 1122222222233333333321111111 1124467889999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 262 IIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 262 ~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
+.+++.+|+.|+++|..++.++.....|...++++++.|+|.+|++|+
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 999999999999999999999999999999999999999999999987
No 193
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=9e-16 Score=160.90 Aligned_cols=289 Identities=13% Similarity=0.214 Sum_probs=194.6
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee--CCCEEEEEECCCeEEEEECCCCccccccCCCcceeecc
Q 000961 106 PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP--KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183 (1208)
Q Consensus 106 ~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p--~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~ 183 (1208)
..++++...|+|++||+.+++.+..++++...+..+.|.. ....+.+++.||+|++||++.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~----------- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR----------- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh-----------
Confidence 4688888899999999999999999999999999999987 457899999999999999998655432
Q ss_pred ccccccccccceEEEEEeccC-CCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEcc
Q 000961 184 MNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGA----DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1208)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~L~sgs----~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp 258 (1208)
.....+. .+..+++.+-.++.+++|+ .+-.|.+||.+..+...-.-...|...|+++.|||
T Consensus 110 --------------~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 110 --------------ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred --------------eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 1233333 4566777766777888876 46789999999887532334567999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCee---EEEeecCCCCEEEEEEeCCC--CEEEEEECCCeeeEeeCCCcceEEecCCEE
Q 000961 259 -KQDIIVSNSEDKSIRVWDVTKRTG---VQTFRREHDRFWILASHPEM--NLLAAGHDSGMIVFKLERERPAFAVSGDSL 332 (1208)
Q Consensus 259 -~g~~l~sgs~dg~I~vwd~~~~~~---~~~~~~~~~~i~~la~sp~~--~~la~g~~~gi~v~~l~~~~~~~s~~~~~L 332 (1208)
+.++|++||.||-|.+||+..... +...-.+...|..+.|+.++ +++...+..+..+|+++...+........+
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 567999999999999999875422 22222355678999999988 777777776666666654432111110000
Q ss_pred EEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCC---CCccccc
Q 000961 333 FYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIG---RGDSVQD 409 (1208)
Q Consensus 333 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~---~~~~~~~ 409 (1208)
-. -|.. .... . ..+-. .++|.+.-+.+..+.+.+...++.+.....+ .....+.
T Consensus 256 ~~--------~d~r-----------~~~~-~--dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~ 312 (376)
T KOG1188|consen 256 SA--------DDLR-----------KEDN-C--DYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ 312 (376)
T ss_pred hh--------hhHH-----------hhhh-h--hheee-cccCCCcceEEEeccccCceeEEEeeecccccccCcccccc
Confidence 00 0000 0000 0 01111 2334433333333433455666555432222 2222344
Q ss_pred c-cCCceEEEEEEeCCcEEEEEcCCCEEEEEecC
Q 000961 410 A-KKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1208)
Q Consensus 410 ~-~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1208)
+ |...|+++.|...+.++.+|+.||.+.+|..+
T Consensus 313 g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 313 GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 4 55678899999899999999999999999864
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=1.9e-17 Score=189.86 Aligned_cols=246 Identities=25% Similarity=0.405 Sum_probs=196.8
Q ss_pred EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000961 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1208)
.+..+.+|...|.|+.|...|.++++|++|..|+||..++..++.+..||++.|+.++.+.++.+++++|.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 123 ~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
..+.++..+.+|++.|++++|+|-. +.+.||++++||.+- ......|.... ..
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~----------------------~~ 314 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLK----------------------FT 314 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCC----------------------cc
Confidence 9999999999999999999999965 778899999999871 11111111000 01
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCe
Q 000961 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g-~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
...-+.++.|..++..+++|+.|+.-..|.+.- +..+...+.-+.++.+. .+.+++-.+-.+.+|++.+|.
T Consensus 315 ~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~--------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~ 386 (1113)
T KOG0644|consen 315 EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ--------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ 386 (1113)
T ss_pred cccceeeeeccccccccccccCCcccccchhhH--------hhhhccceEEEeccccccccceeeeeeeEeeeeecccch
Confidence 124466777888888899999999888886543 22233333333333222 345566667789999999999
Q ss_pred eEEEeecCCCCEEEEEEeCCCCEEE--EEECCCeeeEeeCCCcc
Q 000961 282 GVQTFRREHDRFWILASHPEMNLLA--AGHDSGMIVFKLERERP 323 (1208)
Q Consensus 282 ~~~~~~~~~~~i~~la~sp~~~~la--~g~~~gi~v~~l~~~~~ 323 (1208)
..+...+|.+.+..+.+||-...++ +|.++..+||++..+.|
T Consensus 387 l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 387 LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 9999999999999999999877655 67888899998877655
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.8e-14 Score=144.01 Aligned_cols=260 Identities=19% Similarity=0.270 Sum_probs=185.7
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCC---------C-eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRM---------G-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~---------g-~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
.|.+-+|+|.+++|++|..+|.|.+..+++ | ..+-.+++|+++|..++|+ ..+|++|++ |.|+=|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 455668999999999999999999998753 2 2344557999999999998 346777765 99999987
Q ss_pred CCCeE------EEEE--ccC-----CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC
Q 000961 81 KMHRC------LFTL--LGH-----LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE 147 (1208)
Q Consensus 81 ~~~~~------~~~l--~~h-----~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~ 147 (1208)
..... +... .-| -..|.++...|..+-++.++.|+.++-||+++|+...++++|+++|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 53221 1111 112 2368899999888888888899999999999999999999999999999985556
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccC-CCeEEEEEcCCCCEEEEEeCCC
Q 000961 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGADDR 226 (1208)
Q Consensus 148 ~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~L~sgs~dg 226 (1208)
..+++|+.||++|+||.++.+.......-. + ...+..|. ..|-+++-+ ..++++|+ ..
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk-------~-----------~~~lRp~~g~wigala~~--edWlvCGg-Gp 227 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYK-------N-----------PNLLRPDWGKWIGALAVN--EDWLVCGG-GP 227 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEecccc-------C-----------hhhcCcccCceeEEEecc--CceEEecC-CC
Confidence 789999999999999999877554321100 0 00112222 335555544 45787776 45
Q ss_pred cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeC
Q 000961 227 QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 227 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp 300 (1208)
.+.+|.++..+...+..+++ .+..+.|. ...++++++.+.|.-|.+. |.............++..|+.
T Consensus 228 ~lslwhLrsse~t~vfpipa---~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~ 295 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA---RVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQT 295 (325)
T ss_pred ceeEEeccCCCceEEEeccc---ceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccC
Confidence 69999999998755555554 46666775 3458888888889999864 555444554444455555443
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=158.96 Aligned_cols=263 Identities=15% Similarity=0.249 Sum_probs=183.4
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEc--CCCEEEEEECCCeEEEEECCCCeEEE--EEccCC-CCE
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWNYKMHRCLF--TLLGHL-DYI 96 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd~~~~~~~~--~l~~h~-~~I 96 (1208)
..+|++.++|.|++||..+|+.+..|++|...++.+.|.. ....+.+++.||+|++||+++..... ....|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999977 45578899999999999998765443 344555 466
Q ss_pred EEEEEcCCCCEEEEEEC----CCcEEEEECCCCeE-EEEE-ecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCcc
Q 000961 97 RTVQFHHEYPWIVSASD----DQTIRIWNWQSRTC-ISVL-TGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRK 169 (1208)
Q Consensus 97 ~~v~fs~d~~~l~s~s~----Dg~I~iwd~~s~~~-i~~l-~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~ 169 (1208)
.+++..-.++.+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+|.. +.|++||.||.|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77777767777777753 56899999997766 5544 5799999999999976 8999999999999999976421
Q ss_pred ccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeecCc-
Q 000961 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTLRGH- 247 (1208)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h- 247 (1208)
.. .....-.|...|.++.|+.++ +.|.+-+..+...+|++..+.. ...+...
T Consensus 201 eD------------------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~--~~~~~~~~ 254 (376)
T KOG1188|consen 201 ED------------------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE--ETWLENPD 254 (376)
T ss_pred hh------------------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh--hhcccCcc
Confidence 10 111233467789999999876 4688888899999999988764 2222111
Q ss_pred -----------CCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC---CC---eeEEEeec-CCCCEEEEEEeCCCCEEEEE
Q 000961 248 -----------MNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVT---KR---TGVQTFRR-EHDRFWILASHPEMNLLAAG 308 (1208)
Q Consensus 248 -----------~~~V~~l~~sp~g~~l~sgs~-dg~I~vwd~~---~~---~~~~~~~~-~~~~i~~la~sp~~~~la~g 308 (1208)
...+...-...+...++.++. -+...++-+. ++ +.+..+.+ +..-|.++.|...+.++.+|
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TG 334 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTG 334 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeecc
Confidence 011111111224445554444 4555544332 22 22333444 33345666666666666666
Q ss_pred EC
Q 000961 309 HD 310 (1208)
Q Consensus 309 ~~ 310 (1208)
+.
T Consensus 335 GE 336 (376)
T KOG1188|consen 335 GE 336 (376)
T ss_pred CC
Confidence 64
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.5e-15 Score=157.67 Aligned_cols=258 Identities=18% Similarity=0.239 Sum_probs=178.3
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC------CCeEEEEEe-cCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ------SRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 87 ~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~------s~~~i~~l~-~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
..+.+|.+.|.++.|+.+++||++|++|..+++|++. +.+++.... .|.+.|.|++|....+.+++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4457899999999999999999999999999999985 345666654 355889999999988999999999999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-e
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-A 238 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~-~ 238 (1208)
...|+.+.+... ...-....+.|..+..+|..+.|++.+.++.|.+||.+... .
T Consensus 130 I~HDiEt~qsi~-------------------------V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 130 IKHDIETKQSIY-------------------------VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred Eeeecccceeee-------------------------eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 999998744321 11122234589999999999999999999999999998866 3
Q ss_pred eEEEeecCcCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCee-EEE------eecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 239 WEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTG-VQT------FRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 239 ~~~~~l~~h~~~V~~l~~sp~-g~~l~sgs~dg~I~vwd~~~~~~-~~~------~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
.....+.........+.|+|. ..+|++.++.+-+-+||.+.... +.. +........++.|+|+|+.+.+-..
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 234444455667889999995 45778888889999999875332 111 1112223456788888887655432
Q ss_pred CCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecC-C-CCCCCCcCCeEEEEcCCCCEEEEEEecCC
Q 000961 311 SGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRR-P-GSTSLNQSPRTLSYSPTENAVLICSDVDG 388 (1208)
Q Consensus 311 ~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~-~-~~~~~~~~i~~l~~spdg~~llv~~~~~~ 388 (1208)
.. .-.+||+.+... +++.... + |--. ...+.+++|.-|-. +.+++++
T Consensus 265 ~~--------------------------~P~~~D~~S~R~-~V~k~D~N~~GY~N-~~T~KS~~F~~D~~---v~tGSD~ 313 (609)
T KOG4227|consen 265 GK--------------------------CPLYFDFISQRC-FVLKSDHNPNGYCN-IKTIKSMTFIDDYT---VATGSDH 313 (609)
T ss_pred cC--------------------------CCEEeeeecccc-eeEeccCCCCccee-eeeeeeeeeeccee---eeccCcc
Confidence 11 112333333221 1222110 0 0000 11567778876544 4567788
Q ss_pred CEEEEEEccCCC
Q 000961 389 GSYELYVIPKDS 400 (1208)
Q Consensus 389 g~v~l~~l~~~~ 400 (1208)
-.+.+|.++...
T Consensus 314 ~~i~~WklP~~~ 325 (609)
T KOG4227|consen 314 WGIHIWKLPRAN 325 (609)
T ss_pred cceEEEecCCCc
Confidence 889999998653
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.5e-13 Score=158.67 Aligned_cols=259 Identities=13% Similarity=0.147 Sum_probs=171.3
Q ss_pred EEecCCeEEEEECCC-Ce--EEEEecccccCEEEEEEEcCCCEEEEEE-CCCeEEEEECC-CCeE--EEEEccCCCCEEE
Q 000961 26 ASLHSGVIQLWDYRM-GT--LIDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVWNYK-MHRC--LFTLLGHLDYIRT 98 (1208)
Q Consensus 26 sg~~dg~I~iWd~~~-g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~vWd~~-~~~~--~~~l~~h~~~I~~ 98 (1208)
+...++.|.+||+.+ ++ .+.++. +.+....++++|++++|++++ .++.|.+|++. +++. ..... ..+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 335689999999964 43 455554 345678899999999887664 57899999997 3332 22222 3345678
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEECCC-C---eEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEECCCCccccc
Q 000961 99 VQFHHEYPWIVSASD-DQTIRIWNWQS-R---TCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKTV 172 (1208)
Q Consensus 99 v~fs~d~~~l~s~s~-Dg~I~iwd~~s-~---~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl~~~~~~~~ 172 (1208)
++|+|+++++++++. ++.|.+|++.+ + +.+..+. +.....+++++|+++++++++ .++.|.+||+.+......
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998888775 78999999864 2 2333333 233467788999998886655 569999999976321110
Q ss_pred cCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC--CceeEEEeecCc--
Q 000961 173 SPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNE--TKAWEVDTLRGH-- 247 (1208)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~-dg~I~iwd~~~--~~~~~~~~l~~h-- 247 (1208)
... ...... .......++|+|+|++++++.. ++.|.+|++.. ++...+..+..+
T Consensus 164 ~~~--------------------~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 164 QEP--------------------AEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred cCC--------------------CceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 000 000011 1233567899999999988876 89999999974 332223333221
Q ss_pred ----CCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCe----eEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 248 ----MNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRT----GVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 248 ----~~~V~~l~~sp~g~~l~sgs~-dg~I~vwd~~~~~----~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
......+.++|++++++++.. ++.|.+|++.... .+..... ....+.+.++|+|++++++.
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEE
Confidence 122346889999999988854 6889999986433 2222222 12445788899998888765
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.1e-14 Score=141.46 Aligned_cols=245 Identities=19% Similarity=0.266 Sum_probs=173.8
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCC----------CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECC
Q 000961 96 IRTVQFHHEYPWIVSASDDQTIRIWNWQS----------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 96 I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s----------~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
|..-+|+|.+++|+.|+.+|+|.+..+.+ ...+...++|.+++..++|+ .++|++|+ ||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 45567899999999999999999998863 23455568999999999998 45677776 6999999876
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~ 245 (1208)
......... .++.... ....-...-..|+++...|..+-+++++.|+.++-||+.+++. ..+++
T Consensus 90 E~~es~~~K------------~lwe~~~--P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~r 153 (325)
T KOG0649|consen 90 EEEESLATK------------RLWEVKI--PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREYR 153 (325)
T ss_pred hhhhhccch------------hhhhhcC--ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEEc
Confidence 543311000 0000000 0000011224689999999888888888999999999999997 78999
Q ss_pred CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCC--------EEEEEEeCCCCEEEEEECCCeeeEe
Q 000961 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR--------FWILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 246 ~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~--------i~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
+|+..|.++.--.....+++|++||++|+||.++++.++.+.....+ -|..+..-+...+++|
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG--------- 224 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG--------- 224 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec---------
Confidence 99999999998556667999999999999999999998886532211 1222222233344443
Q ss_pred eCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 318 LERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 318 l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
....+.+|.+.+.+...+++++. ++..+.|-.| .+++. + +++.+.-|.+.
T Consensus 225 ------------------gGp~lslwhLrsse~t~vfpipa--------~v~~v~F~~d--~vl~~-G-~g~~v~~~~l~ 274 (325)
T KOG0649|consen 225 ------------------GGPKLSLWHLRSSESTCVFPIPA--------RVHLVDFVDD--CVLIG-G-EGNHVQSYTLN 274 (325)
T ss_pred ------------------CCCceeEEeccCCCceEEEeccc--------ceeEeeeecc--eEEEe-c-cccceeeeeec
Confidence 46677899999988888888775 6667777654 23332 2 45688888887
Q ss_pred C
Q 000961 398 K 398 (1208)
Q Consensus 398 ~ 398 (1208)
+
T Consensus 275 G 275 (325)
T KOG0649|consen 275 G 275 (325)
T ss_pred c
Confidence 5
No 200
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=5.3e-15 Score=157.44 Aligned_cols=218 Identities=20% Similarity=0.313 Sum_probs=169.0
Q ss_pred EEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 130 VLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 130 ~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
.+.||.++|..+.|+|.. ..|++||.|.+|.||++........ -......+.+|...|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~--------------------ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD--------------------LTEPVVELYGHQRRVG 135 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC--------------------cccceEEEeecceeEE
Confidence 456899999999999954 7899999999999999966432211 1123457899999999
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee
Q 000961 209 WAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287 (1208)
Q Consensus 209 ~l~~sp~g-~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~ 287 (1208)
-++|||.. +.|++++.|.+|.+|++.++.. +.++. |...|+++.|+.+|.+|++.+.|+.|||||.++++.+..-.
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea--li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA--LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCce--eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence 99999964 5788999999999999999997 55665 99999999999999999999999999999999999998876
Q ss_pred cCCC-CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc-eeeEeecCCCCCCCC
Q 000961 288 REHD-RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD-TQVIPIRRPGSTSLN 365 (1208)
Q Consensus 288 ~~~~-~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~ 365 (1208)
.|.+ +-..+.|-.++.++.+|...- +++++-+||..+-+. .....+.. + +
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~-----------------------seRq~aLwdp~nl~eP~~~~elDt-S--n-- 264 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRM-----------------------SERQIALWDPNNLEEPIALQELDT-S--N-- 264 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccc-----------------------cccceeccCcccccCcceeEEecc-C--C--
Confidence 5554 345566777787666654322 578888998877333 22222322 1 2
Q ss_pred cCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCC
Q 000961 366 QSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1208)
Q Consensus 366 ~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~ 400 (1208)
.|.---|.||.+.+.+++. .|+.|+.|.+..+.
T Consensus 265 -Gvl~PFyD~dt~ivYl~GK-GD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 265 -GVLLPFYDPDTSIVYLCGK-GDSSIRYFEITNEP 297 (472)
T ss_pred -ceEEeeecCCCCEEEEEec-CCcceEEEEecCCC
Confidence 5666678888887777766 67899999998764
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=8.3e-15 Score=172.45 Aligned_cols=245 Identities=18% Similarity=0.230 Sum_probs=184.5
Q ss_pred CCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeE--EEE----ecccccCEEEEEEEcCC--CEEEEEECCCeEEEEE
Q 000961 9 SNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTL--IDR----FDEHDGPVRGVHFHKSQ--PLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 9 ~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g~~--i~~----l~~h~~~V~~l~fsp~~--~~Lasgs~Dg~I~vWd 79 (1208)
...|+|+.|+| +..+|+.|+.+|.|.+||++.+.. ... ...|..+|+.+.|..+- .-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 56899999999 556777788899999999987755 222 23699999999996544 4599999999999998
Q ss_pred CCCCeE------EEEEc------cCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCe--------EEEEEecCCCCE
Q 000961 80 YKMHRC------LFTLL------GHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRT--------CISVLTGHNHYV 138 (1208)
Q Consensus 80 ~~~~~~------~~~l~------~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~--------~i~~l~~h~~~V 138 (1208)
++.-.. ..... .....++++.|.+..+ .++.|+++|.|.--+....+ .......|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 764221 11111 1234689999998765 68889999998874443222 233556789999
Q ss_pred EEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-
Q 000961 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP- 217 (1208)
Q Consensus 139 ~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~- 217 (1208)
+++.++|-+..++..+.|.+|++|....... ..+.+..+...|++++|||..+
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~--------------------------Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS--------------------------PLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCC--------------------------cchhhhhccceeeeeEEcCcCce
Confidence 9999999886555555599999998763111 1224555666799999999876
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 218 LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 218 ~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
.|+++..||.+.+||+......++.+..-+....+.+.|++.|+.|++|...|++.+|++..
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 56677779999999998776655666666677778889999999999999999999999863
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.8e-14 Score=169.81 Aligned_cols=294 Identities=16% Similarity=0.228 Sum_probs=201.8
Q ss_pred cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccC---CCCEEEEEEcCC--CCEEEEEECCCcEEEEECC-
Q 000961 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH---LDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQ- 123 (1208)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h---~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~- 123 (1208)
...+-..+.|+|-.+.++++.+.-.|+|||++.++++..+..+ ...|+.+.+-.+ ...+++|+.||.|+||+--
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3345678899999999999998889999999999998877543 347888888754 4589999999999999632
Q ss_pred ----CCeEEEEEec-------CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccc
Q 000961 124 ----SRTCISVLTG-------HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192 (1208)
Q Consensus 124 ----s~~~i~~l~~-------h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1208)
..+.+..+.+ ..+.-.-+.|.....+|++++.-..|+|||.........
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d-------------------- 1202 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD-------------------- 1202 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee--------------------
Confidence 2233333322 111124466776666777777789999999977443322
Q ss_pred cceEEEEEeccCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCce-eEEEeecCcCCC--eEEEEEccCCCE-EEEEe
Q 000961 193 DAVVKYVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNN--VSCVMFHAKQDI-IVSNS 267 (1208)
Q Consensus 193 ~~~~~~~~~~h~~~V~~l~~s-p~g~~L~sgs~dg~I~iwd~~~~~~-~~~~~l~~h~~~--V~~l~~sp~g~~-l~sgs 267 (1208)
...+....|+++.-+ +.|+.++.|..||.|++||.+.... ..+...+.|+.. |..+.+.+.|-- |++|+
T Consensus 1203 ------iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs 1276 (1387)
T KOG1517|consen 1203 ------IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS 1276 (1387)
T ss_pred ------cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec
Confidence 223344556665544 3478999999999999999876432 126677888887 999999987654 99999
Q ss_pred CCCcEEEEeCCCCeeEEEe--ecC---CCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEE
Q 000961 268 EDKSIRVWDVTKRTGVQTF--RRE---HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRY 342 (1208)
Q Consensus 268 ~dg~I~vwd~~~~~~~~~~--~~~---~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v 342 (1208)
.||.|++||++.......+ ..+ ++..+++..|+....+|+|+...+.+|+
T Consensus 1277 ~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~------------------------- 1331 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYS------------------------- 1331 (1387)
T ss_pred cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEe-------------------------
Confidence 9999999999874222222 222 2248999999999999999865444444
Q ss_pred EEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 343 YEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 343 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
+...+...+......-... .+.+.+++|+|..-.+ +.++.|..|.+|...+.
T Consensus 1332 --~~G~~l~~~k~n~~F~~q~-~gs~scL~FHP~~~ll--AaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1332 --LSGEQLNIIKYNPGFMGQR-IGSVSCLAFHPHRLLL--AAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred --cChhhhcccccCcccccCc-CCCcceeeecchhHhh--hhccCCceEEEeecCCc
Confidence 4332221111111111101 2367999999965433 33468899999987754
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=1.2e-14 Score=151.38 Aligned_cols=248 Identities=17% Similarity=0.237 Sum_probs=198.0
Q ss_pred ecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC---eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000961 47 FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1208)
Q Consensus 47 l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~---~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1208)
+.--..+|+|.+|++|+..+|++.....|.||..... +...++..|...|+.+.|+|..+.|++++.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3345679999999999999999999999999987654 5778899999999999999999999999999999999983
Q ss_pred -CC--eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 124 -SR--TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 124 -s~--~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
.+ ++.-.+..++...+++.|+|.++.+++|+....|.||-+.....-- +.++.-
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW-----------------------VsKhik 142 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW-----------------------VSKHIK 142 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee-----------------------hhhhhC
Confidence 33 3455666789999999999999999999999999999886533211 112234
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------ceeE--------EEeecCcCCCeEEEEEccCCCEEE
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET--------KAWE--------VDTLRGHMNNVSCVMFHAKQDIIV 264 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~--------~~~~--------~~~l~~h~~~V~~l~~sp~g~~l~ 264 (1208)
..+...|+++.|+|++-+|+.|+.|+..+++...-. ..|. +.......+.+..+.|+|+|+.|+
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 456788999999999999999999999999864211 0110 222334567899999999999999
Q ss_pred EEeCCCcEEEEeCCCCe-eEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEe
Q 000961 265 SNSEDKSIRVWDVTKRT-GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 265 sgs~dg~I~vwd~~~~~-~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
-.+.|+++.+-|..... .+++.....-+..++.|-.+...+++|.+-+-++|.
T Consensus 223 wv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFV 276 (361)
T ss_pred EecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEE
Confidence 99999999999977654 455555555778899999888888888875554443
No 204
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=5.4e-14 Score=165.63 Aligned_cols=280 Identities=15% Similarity=0.163 Sum_probs=198.7
Q ss_pred CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeE--EEE----EecCCCCEEEEEEee
Q 000961 73 YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTC--ISV----LTGHNHYVMCASFHP 145 (1208)
Q Consensus 73 g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~--i~~----l~~h~~~V~~l~~~p 145 (1208)
+.+.||++++.........-...|+++.|+|..+ .++.|+.+|.|.+||++.+.. ... ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999987633333333567899999999765 677788899999999987654 222 236889999999977
Q ss_pred CC--CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-CEEEEE
Q 000961 146 KE--DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSG 222 (1208)
Q Consensus 146 ~~--~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~L~sg 222 (1208)
+. .-+++++.||.|..|+++............... .+..-.....+++++.|.+.. ..+++|
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~---------------~~~~~~~~~~~~t~~~F~~~~p~~FiVG 366 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK---------------HKGQQSSKAVGATSLKFEPTDPNHFIVG 366 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhccccccc---------------ccccccccccceeeEeeccCCCceEEEE
Confidence 55 449999999999999887654422110000000 000111234568899998854 578999
Q ss_pred eCCCcEEEEECCCCceeE------EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEeecCCCCEEE
Q 000961 223 ADDRQVKLWRMNETKAWE------VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT-KRTGVQTFRREHDRFWI 295 (1208)
Q Consensus 223 s~dg~I~iwd~~~~~~~~------~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~i~~ 295 (1208)
+++|.|.-=+....+... ......|.++|+++.++|-+..++..+.|-++++|... ...++..+..+.+.+++
T Consensus 367 Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 367 TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeee
Confidence 999998773333322211 33566789999999999987766666669999999987 66777777778888999
Q ss_pred EEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcC
Q 000961 296 LASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSP 375 (1208)
Q Consensus 296 la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 375 (1208)
++|||....+.+..+ .+|.+.+||+......++.+.+... . ....+.|++
T Consensus 447 vaWSptrpavF~~~d-------------------------~~G~l~iWDLl~~~~~Pv~s~~~~~--~---~l~~~~~s~ 496 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVD-------------------------GDGNLDIWDLLQDDEEPVLSQKVCS--P---ALTRVRWSP 496 (555)
T ss_pred eEEcCcCceEEEEEc-------------------------CCCceehhhhhccccCCcccccccc--c---ccceeecCC
Confidence 999998765444333 4788999999987777776665432 2 667788888
Q ss_pred CCCEEEEEEecCCCEEEEEEccCC
Q 000961 376 TENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 376 dg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
.|+.+++ |...|.+.+|++...
T Consensus 497 ~g~~lav--Gd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 497 NGKLLAV--GDANGTTHILKLSES 518 (555)
T ss_pred CCcEEEE--ecCCCcEEEEEcCch
Confidence 8986644 557899999999753
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=3.1e-13 Score=143.67 Aligned_cols=314 Identities=17% Similarity=0.233 Sum_probs=211.7
Q ss_pred ccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC--cEEEEECCCCeEE
Q 000961 51 DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ--TIRIWNWQSRTCI 128 (1208)
Q Consensus 51 ~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg--~I~iwd~~s~~~i 128 (1208)
...+..+.|+.+...|..|+.|| -++++.+..............|.-+-|+.. +++..+.+. .+++.+...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 44577778999999999999987 577777654432222223335666667654 566555554 4999999988888
Q ss_pred EEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 129 SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 129 ~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
..+. -...|.++.++. +.|+++-.+ .|.|||+++.+...... ....+..++.
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~------------------------t~~~n~~gl~ 133 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIE------------------------TTPPNPKGLC 133 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhh------------------------ccCCCccceE
Confidence 8776 456799999974 456665544 49999999877554211 2334667787
Q ss_pred EEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCc-EEEEeCCCCeeEEE
Q 000961 209 WAAFHPTLPLIVSGA--DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-IRVWDVTKRTGVQT 285 (1208)
Q Consensus 209 ~l~~sp~g~~L~sgs--~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~-I~vwd~~~~~~~~~ 285 (1208)
++++++.+.+++.-+ ..|.|.+||..+-+. +..+..|.+++.+++|+++|.+||++|+.|+ |||+.+.+|+.+..
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~--v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQP--VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEccccee--eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 788888777888654 478999999998886 8888999999999999999999999999997 79999999999999
Q ss_pred eecCCC--CEEEEEEeCCCCEEEEEEC-CCeeeEeeCCCcc-------eEEecCCEE-----EEEeCCeEEEEEccCCcc
Q 000961 286 FRREHD--RFWILASHPEMNLLAAGHD-SGMIVFKLERERP-------AFAVSGDSL-----FYAKDRFLRYYEFSTQKD 350 (1208)
Q Consensus 286 ~~~~~~--~i~~la~sp~~~~la~g~~-~gi~v~~l~~~~~-------~~s~~~~~L-----~~~~d~~i~v~d~~~~~~ 350 (1208)
|++... .|.+++|+|++++|++.++ +.+.+|+++.... ........+ .+.-.+.-.+|+.. +.
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~--R~ 289 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQS--RK 289 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhc--cc
Confidence 987654 5889999999999987655 5577998875321 000000000 00001111223322 23
Q ss_pred eeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCc
Q 000961 351 TQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGD 405 (1208)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~ 405 (1208)
.....++..+. . .+..+.-.+...++.+++ .+|.+..|.++.+..+++.
T Consensus 290 FAt~~l~~s~~-~---~~~~l~~~~~~~~v~vas--~dG~~y~y~l~~~~gGec~ 338 (391)
T KOG2110|consen 290 FATAKLPESGR-K---NICSLSSIQKIPRVLVAS--YDGHLYSYRLPPKEGGECA 338 (391)
T ss_pred eeEEEccCCCc-c---ceEEeeccCCCCEEEEEE--cCCeEEEEEcCCCCCceeE
Confidence 23333333221 1 223333234566666644 4689999999876555553
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.2e-14 Score=170.87 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=169.4
Q ss_pred CCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC---CeEEEEECCCCeE--EEEEccCCCCEEEEEEcCC
Q 000961 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRC--LFTLLGHLDYIRTVQFHHE 104 (1208)
Q Consensus 30 dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~--~~~l~~h~~~I~~v~fs~d 104 (1208)
+..|.+||+.... ...+..|...+.+.+|||+|+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999975444 56677888899999999999999987643 4799999988753 3333333 346899999
Q ss_pred CCEEEEEE-CCCcEEEE--ECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEECCCCccccccCCCccee
Q 000961 105 YPWIVSAS-DDQTIRIW--NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILR 180 (1208)
Q Consensus 105 ~~~l~s~s-~Dg~I~iw--d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~~ 180 (1208)
|++|+.++ .+|.+.|| |+.+++. ..+..+...+.+..|+|+|+.|+.++ .+|..++|++......
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---------- 327 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---------- 327 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----------
Confidence 99888765 57766555 6666554 55666777788999999999777655 5788888886432110
Q ss_pred eccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC
Q 000961 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g 260 (1208)
.. .+ .+.. ....|+|+|+.|++.+.++ +.+||+.+++.. .+..+ ....++.|+|+|
T Consensus 328 ---------------~~-~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~---~lt~~-~~~~~~~~sPdG 383 (429)
T PRK01742 328 ---------------AS-LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE---VLSST-FLDESPSISPNG 383 (429)
T ss_pred ---------------eE-Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE---EecCC-CCCCCceECCCC
Confidence 00 11 2222 3578999999998888765 556999887742 22211 123567899999
Q ss_pred CEEEEEeCCCcEEEEeC--CCCeeEEEeecCCCCEEEEEEeCC
Q 000961 261 DIIVSNSEDKSIRVWDV--TKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 261 ~~l~sgs~dg~I~vwd~--~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
++|+.++.++.+.+|++ .++...+.+..+.+.+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 99999999998888875 357778888877788888999985
No 207
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.8e-13 Score=157.14 Aligned_cols=205 Identities=18% Similarity=0.186 Sum_probs=156.9
Q ss_pred EEeccccEEEEE-EeCCEEEEEecCCceEEEEcChhh-----------HHHHHhhcccccccchHHHHHHHhCCChhhhh
Q 000961 563 IRTLDVPIYITK-VSGNTIFCLDRDGKNRAIVIDATE-----------YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVAL 630 (1208)
Q Consensus 563 i~~l~~~~~l~~-~~~~~l~~l~r~~~~~~~~ld~~e-----------~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al 630 (1208)
|..++.....++ ++.+.+|-....++++...||... ...+-+-+.+.......++-...+.|+.|+|+
T Consensus 741 iG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~ 820 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEAL 820 (1416)
T ss_pred eccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHH
Confidence 444444443333 356778888888889999999876 11122222333233455666677888889888
Q ss_pred ccccCcchhh----HHHHhcCCHHHHHHHHHHhC----------------------------------------------
Q 000961 631 HFVKDERTRF----NLALESGNIQIAVASAKEID---------------------------------------------- 660 (1208)
Q Consensus 631 ~~~~~~~~~f----~lal~~g~~~~A~~~a~~~~---------------------------------------------- 660 (1208)
.++..++ || .+....|.|++|+++|+.-|
T Consensus 821 ~lYr~ck-R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 821 ILYRQCK-RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred HHHHHHH-HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 8887665 44 34455688888888874433
Q ss_pred -----------ChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHh
Q 000961 661 -----------EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALY 729 (1208)
Q Consensus 661 -----------~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~ 729 (1208)
++.+|+++|++...+|+.+-|...|..++|+-.+.++.++.|+.+|...+++ ..||..+++|.+..
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~---esgd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE---ESGDKAACYHLARM 976 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHH---hcccHHHHHHHHHH
Confidence 2689999999999999999999999999999999999999999999876654 88999888888654
Q ss_pred ---cCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCC
Q 000961 730 ---LGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGD 771 (1208)
Q Consensus 730 ---lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~ 771 (1208)
.|++.+|+++|.++.-+..|+.++|.|++.|+-.-|+-.-++
T Consensus 977 YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 599999999999999999999999999999877777665443
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=8.8e-13 Score=152.26 Aligned_cols=275 Identities=13% Similarity=0.139 Sum_probs=178.2
Q ss_pred EEEEECCCeEEEEECCC-Ce--EEEEEccCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEECC-CCeE--EEEEecCCCCE
Q 000961 66 FVSGGDDYKIKVWNYKM-HR--CLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIWNWQ-SRTC--ISVLTGHNHYV 138 (1208)
Q Consensus 66 Lasgs~Dg~I~vWd~~~-~~--~~~~l~~h~~~I~~v~fs~d~~~l~s~s-~Dg~I~iwd~~-s~~~--i~~l~~h~~~V 138 (1208)
+++...++.|.+|++.+ ++ .+.++. +.+....++++|++++|++++ .++.|.+|++. +++. +.... ..+..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34446789999999964 33 445554 345677899999999887765 47899999986 3432 22222 33456
Q ss_pred EEEEEeeCCCEEEEEEC-CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC
Q 000961 139 MCASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP 217 (1208)
Q Consensus 139 ~~l~~~p~~~~l~s~s~-Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~ 217 (1208)
..++|+|+++++++++. ++.|.+|++........ ...... +......++++|+++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-----------------------~~~~~~-~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA-----------------------PIQIIE-GLEGCHSANIDPDNR 138 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-----------------------ceeecc-CCCcccEeEeCCCCC
Confidence 78999999998888764 88999999864211100 000111 223456788999999
Q ss_pred EEEEEe-CCCcEEEEECCCCceeE-----EEeecCcCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCC--C--eeEEEe
Q 000961 218 LIVSGA-DDRQVKLWRMNETKAWE-----VDTLRGHMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTK--R--TGVQTF 286 (1208)
Q Consensus 218 ~L~sgs-~dg~I~iwd~~~~~~~~-----~~~l~~h~~~V~~l~~sp~g~~l~sgs~-dg~I~vwd~~~--~--~~~~~~ 286 (1208)
++++++ .++.|.+||+.+..... ..... .......+.|+|+|++++++.+ +++|.+|++.. + +.++.+
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 886555 56999999997643211 01111 2344678999999999988876 89999999873 2 233333
Q ss_pred ecCC------CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCc-ceeeEeecCC
Q 000961 287 RREH------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK-DTQVIPIRRP 359 (1208)
Q Consensus 287 ~~~~------~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~-~~~~~~~~~~ 359 (1208)
.... .....+.++|+++++.++.. .++.|.+|++.... ..........
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-------------------------~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDR-------------------------TASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecC-------------------------CCCeEEEEEEeCCCCeEEEeEEEec
Confidence 2211 11224778888887777642 35667777775432 1111111111
Q ss_pred CCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 360 GSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 360 ~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
+. .+..+.++|||++++++.. .++++.+|+++.
T Consensus 273 ~~-----~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~~ 305 (330)
T PRK11028 273 ET-----QPRGFNIDHSGKYLIAAGQ-KSHHISVYEIDG 305 (330)
T ss_pred cc-----cCCceEECCCCCEEEEEEc-cCCcEEEEEEcC
Confidence 21 5678999999999988764 567999999864
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.9e-15 Score=163.51 Aligned_cols=300 Identities=16% Similarity=0.230 Sum_probs=227.2
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEec-ccccCEEEEEEEcC--CCEEEEEECCCeEEEE
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKS--QPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~--~~~Lasgs~Dg~I~vW 78 (1208)
..+|.+|.+-|..|.|+..|.+|++|+.|..|.+||+..++....|. +|...|..-.|-|. ...+++++.||.|++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 45799999999999999999999999999999999999998887774 79999988889774 3479999999999998
Q ss_pred ECCC-CeEE--EEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEE---ecCCC---CEEEEEEeeCC-
Q 000961 79 NYKM-HRCL--FTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVL---TGHNH---YVMCASFHPKE- 147 (1208)
Q Consensus 79 d~~~-~~~~--~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l---~~h~~---~V~~l~~~p~~- 147 (1208)
.+.. +.+. ..+..|.++|..++.-|+.+ -|.+++.|+.+.-.|++++.....+ ..+.. ....++.+|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 7653 3332 34567999999999999876 6889999999999999876544333 22333 46788888866
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCc
Q 000961 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227 (1208)
Q Consensus 148 ~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~ 227 (1208)
..+++++.|..+++||.+..........-. ............-.|++++|+.++.-|++...|-.
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~---------------~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLD---------------KFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhh---------------hcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 589999999999999988755432111000 00011122234457999999988877888888888
Q ss_pred EEEEECCCCce----------eEEE-eecCcCCC--eEEEEE-ccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCE
Q 000961 228 VKLWRMNETKA----------WEVD-TLRGHMNN--VSCVMF-HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (1208)
Q Consensus 228 I~iwd~~~~~~----------~~~~-~l~~h~~~--V~~l~~-sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i 293 (1208)
|+++.-.-+.. ..+. ..++|.+. |..+-| -|...++++||.-|.|.||+-.+++.++.+.+...-|
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VV 439 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVV 439 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceE
Confidence 99995432211 1122 26778664 666654 5889999999999999999999999998888888889
Q ss_pred EEEEEeCCCCEEEEEE-CCCeeeE
Q 000961 294 WILASHPEMNLLAAGH-DSGMIVF 316 (1208)
Q Consensus 294 ~~la~sp~~~~la~g~-~~gi~v~ 316 (1208)
.|+.-||--.+||+++ +..+.||
T Consensus 440 NCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred eccCCCCCCchhhccCCccceeee
Confidence 9999999999998765 3334444
No 210
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=8.3e-15 Score=148.33 Aligned_cols=248 Identities=19% Similarity=0.239 Sum_probs=187.9
Q ss_pred EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000961 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1208)
...+.+|.+.|+++.|..++. |.+|...|.|++|++.+.+....+. .|...|+.+.-.|++ .+.+-+.|+.+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEc
Confidence 445668999999999987775 8899999999999999999888887 677899999988874 6888899999999998
Q ss_pred CCCeEEEE--------------E---------------------------------------ecCCCCEEEEEEeeC-C-
Q 000961 123 QSRTCISV--------------L---------------------------------------TGHNHYVMCASFHPK-E- 147 (1208)
Q Consensus 123 ~s~~~i~~--------------l---------------------------------------~~h~~~V~~l~~~p~-~- 147 (1208)
..+..+.. + .+..+.++|..|.-+ +
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 65321110 0 012245666664332 2
Q ss_pred -CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 000961 148 -DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (1208)
Q Consensus 148 -~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg 226 (1208)
-+++.|.++|.|.+||+++..+....+. ...+......|..+|.++.|.+.-..=++|+.+.
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~-----------------~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----------------SSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeecccc-----------------ccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 3567788999999999988643222111 1113335567899999999998766677888888
Q ss_pred cEEEEECCCCce-eEEE-eecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCE
Q 000961 227 QVKLWRMNETKA-WEVD-TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNL 304 (1208)
Q Consensus 227 ~I~iwd~~~~~~-~~~~-~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~ 304 (1208)
.+..|+++.... .++. ...-..-.|..+..-||++.+++++.|+.||||+.++..++..++.|...+.+++|+|+..+
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence 899998875421 1111 11222345788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEC
Q 000961 305 LAAGHD 310 (1208)
Q Consensus 305 la~g~~ 310 (1208)
+|+++.
T Consensus 308 mAaask 313 (323)
T KOG0322|consen 308 MAAASK 313 (323)
T ss_pred hhhccC
Confidence 998873
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=4e-14 Score=147.48 Aligned_cols=255 Identities=16% Similarity=0.165 Sum_probs=190.6
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC---eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g---~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1208)
..|.---.+|+|.+|++|+..+|++..+..|.||..... +..++++.|+..|++|+|+|..+.|++++.|..-+||.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 345555689999999999999999999999999997655 46789999999999999999999999999999999999
Q ss_pred C-CCC--eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE----EEEecCCCCEEEEEEeeCCCEEEE
Q 000961 80 Y-KMH--RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI----SVLTGHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 80 ~-~~~--~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i----~~l~~h~~~V~~l~~~p~~~~l~s 152 (1208)
. +.+ ++...+..+....+++.|+|.++.+++||....|.||-++..+-- .+-+.+.+.|+++.|+|++-++++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 8 433 444556679999999999999999999999999999977644322 223456788999999999999999
Q ss_pred EECCCeEEEEECC--CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 000961 153 ASLDQTVRVWDIG--ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 230 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~i 230 (1208)
|+.|+..||+..- ....+...+ ......-||. +........+.+..+.|+|+|..|+-.+.|..+.+
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~-------pWgsk~PFG~----lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPT-------PWGSKMPFGQ----LMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCC-------CCccCCcHHH----HHHhhccCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence 9999999999742 111111000 0001111111 11122245678999999999999999999999999
Q ss_pred EECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC
Q 000961 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK 270 (1208)
Q Consensus 231 wd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg 270 (1208)
-|....... +..+....-+..++.|-.+.. ++.++.|.
T Consensus 233 ~da~~p~~~-v~~~~~~~lP~ls~~~ise~~-vv~ag~~c 270 (361)
T KOG1523|consen 233 VDAAGPSER-VQSVATAQLPLLSVSWISENS-VVAAGYDC 270 (361)
T ss_pred eecCCCchh-ccchhhccCCceeeEeecCCc-eeecCCCC
Confidence 998776531 333433346777777765544 45555553
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.7e-13 Score=142.14 Aligned_cols=252 Identities=16% Similarity=0.230 Sum_probs=170.0
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEec-ccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCC----
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMH---- 83 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~---- 83 (1208)
..+..++||+.-..+|++..|-+|++||-+. +....++ .....|+|++|-|.+. .|++|+. +-|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4578899999888889999999999999655 5555554 3566799999999654 6777776 45999986521
Q ss_pred eE----------EEEEccCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEE
Q 000961 84 RC----------LFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 84 ~~----------~~~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s 152 (1208)
+. +..-.+| .+|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+||+++|+.
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 1122344 68999999999999998876 578999999999887776555677889999999999999
Q ss_pred EECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000961 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd 232 (1208)
++-|+..++|......... ...-..+.|...+|+|+|+.|+..+. |.-.+|.
T Consensus 256 At~davfrlw~e~q~wt~e---------------------------rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lys 307 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKE---------------------------RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYS 307 (445)
T ss_pred ecccceeeeehhcccceec---------------------------ceeccCCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence 9999999999654322111 11123348999999999998776653 2233443
Q ss_pred CCCCceeEEEeecCcCCCeEEEEEccCCCEEE-EEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECC
Q 000961 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIV-SNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS 311 (1208)
Q Consensus 233 ~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~-sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~ 311 (1208)
+. |......+. .++......+-|+..-.....-+.-.+...+++|.|.|.++|+...+
T Consensus 308 l~---------------------f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 308 LT---------------------FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred Ee---------------------ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 32 221111111 12222223333433211111111234668899999999999987655
Q ss_pred Ce
Q 000961 312 GM 313 (1208)
Q Consensus 312 gi 313 (1208)
+-
T Consensus 367 ~~ 368 (445)
T KOG2139|consen 367 QS 368 (445)
T ss_pred Cc
Confidence 43
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=2e-13 Score=163.77 Aligned_cols=227 Identities=18% Similarity=0.252 Sum_probs=167.1
Q ss_pred EECCCCeEEEEecccccCEEEEEEEcCC-CEEEEEECCCeEEEEECCC-------CeEEEEEccCCCCEEEEEEcCCCCE
Q 000961 36 WDYRMGTLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKM-------HRCLFTLLGHLDYIRTVQFHHEYPW 107 (1208)
Q Consensus 36 Wd~~~g~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~-------~~~~~~l~~h~~~I~~v~fs~d~~~ 107 (1208)
|+ ..|.++..+..|...|..++.++.. .+|+|||+||+|++||... .+...++......+.++...+.+..
T Consensus 1034 W~-p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CC-ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 77 4789999999999999999998765 9999999999999999753 2334455445678999999999999
Q ss_pred EEEEECCCcEEEEECCCC-------eEEEEEecC-CCCE-EEEEEeeC-CC-EEEEEECCCeEEEEECCCCccccccCCC
Q 000961 108 IVSASDDQTIRIWNWQSR-------TCISVLTGH-NHYV-MCASFHPK-ED-LVVSASLDQTVRVWDIGALRKKTVSPAD 176 (1208)
Q Consensus 108 l~s~s~Dg~I~iwd~~s~-------~~i~~l~~h-~~~V-~~l~~~p~-~~-~l~s~s~Dg~V~vwdl~~~~~~~~~~~~ 176 (1208)
+|+++.||.|++.++... .+......+ .+.+ .+-+|... +. .++.+..-+.|..||++.......
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~---- 1188 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR---- 1188 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh----
Confidence 999999999999988751 112222222 2233 33334322 23 788888999999999987543321
Q ss_pred cceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEE
Q 000961 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF 256 (1208)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~ 256 (1208)
.......+.|++++.+|.+.++++|+..|.+.+||++-+....... .++..++..+..
T Consensus 1189 ---------------------lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1189 ---------------------LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAPIRHVWL 1246 (1431)
T ss_pred ---------------------hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc-CcccCCcceEEe
Confidence 1233345789999999999999999999999999999887632222 344578888888
Q ss_pred ccC---CCEEEEEe--CCCcEEEEeCCCCeeEEEeecC
Q 000961 257 HAK---QDIIVSNS--EDKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 257 sp~---g~~l~sgs--~dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
+|- ....++++ ..+.|.+|++.+|.+..++...
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 773 24555544 4678999999999877776644
No 214
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.3e-12 Score=149.72 Aligned_cols=480 Identities=12% Similarity=0.152 Sum_probs=279.0
Q ss_pred ceEeecCCCCEEEEEEeCCC------------CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCC----CE
Q 000961 2 LTKFETKSNRVKGLSFHSKR------------PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQ----PL 65 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg------------~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~----~~ 65 (1208)
++.++-|...|+.+.|.|-. .+||++...|.|.+||+..+..+..+..|..+|..++|-+.. ..
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~ 127 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDV 127 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhe
Confidence 67889999999999998732 367888889999999999999999999999999999997633 35
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCC-CCEEEEEECCCcEE--------------------------
Q 000961 66 FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIR-------------------------- 118 (1208)
Q Consensus 66 Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d-~~~l~s~s~Dg~I~-------------------------- 118 (1208)
|+.-....+|.+||..+|+.............|+.+.|- ...+...+..|.+.
T Consensus 128 LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl 207 (1062)
T KOG1912|consen 128 LLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL 207 (1062)
T ss_pred eEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence 666666779999999999877665544444444555442 22222223333333
Q ss_pred ------------------------------------------------EEECCCCeEEEEEecCCCCEEEEEEeeCC--C
Q 000961 119 ------------------------------------------------IWNWQSRTCISVLTGHNHYVMCASFHPKE--D 148 (1208)
Q Consensus 119 ------------------------------------------------iwd~~s~~~i~~l~~h~~~V~~l~~~p~~--~ 148 (1208)
++|++-..++.+..-..+.+.-+.|-|++ +
T Consensus 208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd 287 (1062)
T KOG1912|consen 208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD 287 (1062)
T ss_pred hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcc
Confidence 33333333333333333444445566654 5
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCc
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQ 227 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~L~sgs~dg~ 227 (1208)
.|++...||.+.+|-.+........+ +..+.......+.....-.+-........|. ...++.--.+|.
T Consensus 288 ~LfclH~nG~ltirvrk~~~~~f~~~----------~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~ 357 (1062)
T KOG1912|consen 288 ALFCLHSNGRLTIRVRKEEPTEFKKP----------NASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGD 357 (1062)
T ss_pred eEEEEecCCeEEEEEeeccCcccccc----------chhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcch
Confidence 67777888888888654322111111 0000000011111111111222223333343 233444445666
Q ss_pred EEEEECCCCceeE-----------------------------EEeecCcCCCeEEEEEcc-----------CC-------
Q 000961 228 VKLWRMNETKAWE-----------------------------VDTLRGHMNNVSCVMFHA-----------KQ------- 260 (1208)
Q Consensus 228 I~iwd~~~~~~~~-----------------------------~~~l~~h~~~V~~l~~sp-----------~g------- 260 (1208)
+.+|.+.+++... +..-.+|....++...+| .+
T Consensus 358 ~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~ 437 (1062)
T KOG1912|consen 358 STFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTV 437 (1062)
T ss_pred hHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceee
Confidence 6677666432210 000123555555554443 22
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECC----------CeeeEeeCCCcc-------
Q 000961 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS----------GMIVFKLERERP------- 323 (1208)
Q Consensus 261 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~----------gi~v~~l~~~~~------- 323 (1208)
.+++.|+..|+|.++|+.++.....+..|...|.++.|.....++..+... .+.+-++.++..
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~ 517 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQ 517 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCC
Confidence 267899999999999999999988899999999999999888887765421 223334433221
Q ss_pred ----------eEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEc-CCCCE------------
Q 000961 324 ----------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYS-PTENA------------ 379 (1208)
Q Consensus 324 ----------~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~------------ 379 (1208)
..+..+.+|+.. .+.-+.+||+.+.......+..- + .++.+.|+ |.-..
T Consensus 518 ~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~----P---~it~leWsl~~~~si~qk~ls~q~sm 590 (1062)
T KOG1912|consen 518 KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL----P---LITVLEWSLPKHPSIKQKELSKQSSM 590 (1062)
T ss_pred CCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC----C---cEEEEeecccCCCCcccccchhhhhh
Confidence 455677888888 99999999998866554443332 1 37777887 33221
Q ss_pred ---EEEEEecCCCEEEEEEccCCCC----CCC-cccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeee---
Q 000961 380 ---VLICSDVDGGSYELYVIPKDSI----GRG-DSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKK--- 448 (1208)
Q Consensus 380 ---llv~~~~~~g~v~l~~l~~~~~----~~~-~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~--- 448 (1208)
.++. .+ +..+++.+..... +.. ....+...-....++| .+..++.|..+|.+.+||+.++..+.
T Consensus 591 s~n~vv~-ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d 665 (1062)
T KOG1912|consen 591 SENLVVL-DS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRD 665 (1062)
T ss_pred hhceeee-cc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccC
Confidence 1111 11 1223333221110 000 0000111112223455 45689999999999999998554333
Q ss_pred ecCCc-ceEEEEE-eCCccEEEEeCCeEEEEEcCCCeEEEEEeC----CCeeEEEECCCCC
Q 000961 449 SILPI-AADAIFY-AGTGNLLCRAEDRVVIFDLQQRLVLGDLQT----PFVKYVVWSNDME 503 (1208)
Q Consensus 449 l~~~~-~v~~i~~-s~dg~~Las~dg~v~lwdl~~~~~l~~~~~----~~v~~v~ws~dg~ 503 (1208)
...|. ......+ -++++.++-....+-+||...-..+..+.. ..+..+.|.....
T Consensus 666 ~p~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~ 726 (1062)
T KOG1912|consen 666 SPDPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSP 726 (1062)
T ss_pred CCCchhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCc
Confidence 22222 2222222 345788888888899999988888777744 3355566654444
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=6.7e-15 Score=159.74 Aligned_cols=268 Identities=17% Similarity=0.215 Sum_probs=217.4
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~ 90 (1208)
.-..+.|+.+|.+|+.|+..|.|-.+|+.++++...+. -...|+.+.|-.+.++||++-. ..+.|||- .|..++-+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYDN-NGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhh-ceEEEecC-CCcEEeehh
Confidence 44678999999999999999999999999999998885 4556899999988889988865 57999994 577777776
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccc
Q 000961 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (1208)
Q Consensus 91 ~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~ 170 (1208)
.| ..|..+.|.|..-+|++++..|.++--|+.+|+.+..+....+.+..+.-+|-...+-+|...|+|.+|.....+..
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 54 45889999999989999999999999999999999999888899999999999999999999999999998764432
Q ss_pred cccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCC
Q 000961 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN 250 (1208)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~ 250 (1208)
. .+..|.++|.++++.++|.++++.+.|+.++|||++.... +.+... ..+
T Consensus 287 v---------------------------KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--l~t~~t-p~~ 336 (545)
T KOG1272|consen 287 V---------------------------KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--LHTYRT-PHP 336 (545)
T ss_pred H---------------------------HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc--cceeec-CCC
Confidence 2 4557999999999999999999999999999999998774 555544 455
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEe-CCCCe--eEEEee--cCCCCEEEEEEeCCCCEEEEEECCCee
Q 000961 251 VSCVMFHAKQDIIVSNSEDKSIRVWD-VTKRT--GVQTFR--REHDRFWILASHPEMNLLAAGHDSGMI 314 (1208)
Q Consensus 251 V~~l~~sp~g~~l~sgs~dg~I~vwd-~~~~~--~~~~~~--~~~~~i~~la~sp~~~~la~g~~~gi~ 314 (1208)
...+++|..| +++.+....+.+|. ...+. .-..+- .-.+.|..+.|.|-...|-+|+..|+.
T Consensus 337 a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 337 ASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred cccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCce
Confidence 6778888766 44445555799994 22211 111111 223478999999999999999988864
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=4.6e-12 Score=145.99 Aligned_cols=320 Identities=12% Similarity=0.104 Sum_probs=205.3
Q ss_pred CEEE-EEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEE
Q 000961 22 PWIL-ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1208)
Q Consensus 22 ~~La-sg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~ 100 (1208)
++++ +-..+|.|.|.|..+.+.+.++......-..+.|+|||+++.+++.||.|.++|+.+++.+.++.... ....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 4444 44568999999999999999997655444567899999999999999999999999999999987544 468899
Q ss_pred EcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecC-------CCCEEEEEEeeCCCEEEEEEC-CCeEEEEECCCCcccc
Q 000961 101 FHHEYPWIVSAS-DDQTIRIWNWQSRTCISVLTGH-------NHYVMCASFHPKEDLVVSASL-DQTVRVWDIGALRKKT 171 (1208)
Q Consensus 101 fs~d~~~l~s~s-~Dg~I~iwd~~s~~~i~~l~~h-------~~~V~~l~~~p~~~~l~s~s~-Dg~V~vwdl~~~~~~~ 171 (1208)
+|+||+++++++ .++.+.++|.++.+.+..+... ...+..+..+|....++..-. .+.|.+.|....+..
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~- 163 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL- 163 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-
Confidence 999999988775 5899999999999999887532 346778888888876665555 488888887664221
Q ss_pred ccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEee--cCcC
Q 000961 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNETKAWEVDTL--RGHM 248 (1208)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sg-s~dg~I~iwd~~~~~~~~~~~l--~~h~ 248 (1208)
...............|+|++++++++ ..+..|.++|..+.+....... ..|.
T Consensus 164 -------------------------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~ 218 (369)
T PF02239_consen 164 -------------------------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHP 218 (369)
T ss_dssp -------------------------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEE
T ss_pred -------------------------ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccc
Confidence 11222334556678999999987775 4577899999998876221111 1233
Q ss_pred CCeEEEEEccC----------CCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961 249 NNVSCVMFHAK----------QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 249 ~~V~~l~~sp~----------g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l 318 (1208)
.+...+ .||. +...++.-....+.+||..+.+.++++...... .-+..||+++++.+...-+-
T Consensus 219 ~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~----- 291 (369)
T PF02239_consen 219 GPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP----- 291 (369)
T ss_dssp TTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S-----
T ss_pred cccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCC-----
Confidence 333332 2222 223322222345678999999999999987777 77888999999988721110
Q ss_pred CCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 319 ~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
..+.|.++|..+.+....+.... + . .+..+.|++||+.+.++....++.+.+|+..+
T Consensus 292 -----------------~~~~v~viD~~tl~~~~~i~~~~-~--~---~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 292 -----------------DADTVQVIDKKTLKVVKTITPGP-G--K---RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp -----------------SHT-EEEEECCGTEEEE-HHHHH-T-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred -----------------CCceEEEEECcCcceeEEEeccC-C--C---cEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 35678899988864433222111 1 1 47889999999999988876667999999765
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=7.4e-14 Score=166.34 Aligned_cols=218 Identities=11% Similarity=0.084 Sum_probs=156.6
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecC---CeEEEEECCCCeE--EEEecccccCEEEEEEEcCCCEEEEEE-CCCeEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIK 76 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~d---g~I~iWd~~~g~~--i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~ 76 (1208)
+.+..|...|.+.+|||||++|+.++.+ ..|.+||+.+++. +..+.+| ...++|+|||+.|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3466788889999999999999987643 4799999988753 3434444 34689999999888765 577655
Q ss_pred EE--ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCC-eEEEEEecCCCCEEEEEEeeCCCEEEE
Q 000961 77 VW--NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 77 vW--d~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s-~Dg~I~iwd~~s~-~~i~~l~~h~~~V~~l~~~p~~~~l~s 152 (1208)
|| |+.++. ...+..+...+....|+|||++|+.++ .+|...||++... .....+ .+.. .+..|+|+|+.|++
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEE
Confidence 55 665554 455666777888999999999877665 5788888876532 222223 3433 45789999999998
Q ss_pred EECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000961 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd 232 (1208)
++.++ +.+||+.++..... ...+ ....+.|+|+|++|++++.++.+.+|+
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~l---------------------------t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVL---------------------------SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred EcCCC-EEEEECCCCCeEEe---------------------------cCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 88765 55589876442210 0111 124578999999999999999888887
Q ss_pred CC--CCceeEEEeecCcCCCeEEEEEccC
Q 000961 233 MN--ETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 233 ~~--~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
+. +++. ...+..|.+.+...+|+|-
T Consensus 400 ~~~~~G~~--~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 400 LVSADGRF--KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEECCCCc--eEEccCCCCCCCCcccCCC
Confidence 53 3443 6677788888999999985
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=3e-13 Score=162.33 Aligned_cols=256 Identities=16% Similarity=0.161 Sum_probs=178.8
Q ss_pred CceEeecCCCCEEEEEEeCCC-CEEEEEecCCeEEEEECCCC-------eEEEEecccccCEEEEEEEcCCCEEEEEECC
Q 000961 1 MLTKFETKSNRVKGLSFHSKR-PWILASLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD 72 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg-~~Lasg~~dg~I~iWd~~~g-------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D 72 (1208)
++.+|..|+..|..++.++.. .++++|+.||+|++||.+.- +...++....+++.++.+.+.+..+|+++.|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 357888999999999988754 99999999999999997531 2334444467889999999999999999999
Q ss_pred CeEEEEECCCC--e-----EEEEEccCC-C-CEEEEEEcCC-C-CEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCEE
Q 000961 73 YKIKVWNYKMH--R-----CLFTLLGHL-D-YIRTVQFHHE-Y-PWIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVM 139 (1208)
Q Consensus 73 g~I~vWd~~~~--~-----~~~~l~~h~-~-~I~~v~fs~d-~-~~l~s~s~Dg~I~iwd~~s~~~i~~l~--~h~~~V~ 139 (1208)
|.|.+.+++.. + +......+. + .|..-+|... + ..++.+..-+.|..||.+......+++ ...+.|+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 99999998751 1 111112222 2 3333344332 2 378888888999999998876665554 2357899
Q ss_pred EEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC---
Q 000961 140 CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL--- 216 (1208)
Q Consensus 140 ~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g--- 216 (1208)
+++.+|.++++++|+..|.+.+||++-..... ..-.++..++..+..+|..
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~--------------------------sw~~P~~~~i~~v~~~~~~~~~ 1253 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL--------------------------SWEHPARAPIRHVWLCPTYPQE 1253 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceee--------------------------cccCcccCCcceEEeeccCCCC
Confidence 99999999999999999999999997643221 1223345667777776643
Q ss_pred CEEEEEe--CCCcEEEEECCCCceeEEEeec-----------------CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000961 217 PLIVSGA--DDRQVKLWRMNETKAWEVDTLR-----------------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 217 ~~L~sgs--~dg~I~iwd~~~~~~~~~~~l~-----------------~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
...++++ ..+.|.+|++.++....+.... .+.-......+...+..+++|+.|..||.||.
T Consensus 1254 S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 3444444 4778999999988653222211 11111222344445678899999999999998
Q ss_pred CCCee
Q 000961 278 TKRTG 282 (1208)
Q Consensus 278 ~~~~~ 282 (1208)
.....
T Consensus 1334 ~~p~~ 1338 (1431)
T KOG1240|consen 1334 TRPEI 1338 (1431)
T ss_pred CCccc
Confidence 75543
No 219
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.56 E-value=1.5e-13 Score=140.98 Aligned_cols=234 Identities=16% Similarity=0.254 Sum_probs=174.9
Q ss_pred cCCCCEEEEEEeCCCC-----EEEEEecCCeEEEEECCC--CeEE-------EEecccccCEEEEEEEc-CCCEEEEEEC
Q 000961 7 TKSNRVKGLSFHSKRP-----WILASLHSGVIQLWDYRM--GTLI-------DRFDEHDGPVRGVHFHK-SQPLFVSGGD 71 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~-----~Lasg~~dg~I~iWd~~~--g~~i-------~~l~~h~~~V~~l~fsp-~~~~Lasgs~ 71 (1208)
.|.-+++.+.|.|+.. +||++ +..+++|.+.. ++.. .+-..+..|+++..|+. +-+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 4778899999999763 45554 44799999863 2211 11235788999999987 4458889999
Q ss_pred CCeEEEEECCCCe---EEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEe---cCCCCEEEEEEe
Q 000961 72 DYKIKVWNYKMHR---CLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLT---GHNHYVMCASFH 144 (1208)
Q Consensus 72 Dg~I~vWd~~~~~---~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~---~h~~~V~~l~~~ 144 (1208)
|-+..|||++++. ....+-.|...|..++|...+. .+++.+.||.+|++|++..+....+. ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999863 3556778999999999998664 78999999999999998766544442 224678899999
Q ss_pred eCC-CEEEEEECC-CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-CCEEEE
Q 000961 145 PKE-DLVVSASLD-QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVS 221 (1208)
Q Consensus 145 p~~-~~l~s~s~D-g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~L~s 221 (1208)
+.+ +++++-..| ..|.+.|++.... ....+.+|.+.|+.++|.|. ...|++
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~t--------------------------pva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCT--------------------------PVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCc--------------------------ceehhhcCcccccceEecCCCCceeee
Confidence 866 677765544 5689999976332 34478899999999999995 568999
Q ss_pred EeCCCcEEEEECCCCce----eEEEeecCcCCCeEEEEEcc-CCCEEEEEeCC
Q 000961 222 GADDRQVKLWRMNETKA----WEVDTLRGHMNNVSCVMFHA-KQDIIVSNSED 269 (1208)
Q Consensus 222 gs~dg~I~iwd~~~~~~----~~~~~l~~h~~~V~~l~~sp-~g~~l~sgs~d 269 (1208)
+++|.++.+||+...-. -++... .-.+.|..+.|++ .+.+|+.+...
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecC
Confidence 99999999999976432 011111 2467899999996 56677776643
No 220
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.3e-14 Score=153.92 Aligned_cols=197 Identities=15% Similarity=0.237 Sum_probs=157.0
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEcc-
Q 000961 13 KGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG- 91 (1208)
Q Consensus 13 ~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~- 91 (1208)
.+++|+++|..|++|+.||+++||++.+...+.....|.+.|.++.|+|||+.|++.+.| ..+||+..++.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988888888888999999999999999999999999 999999999977766652
Q ss_pred -CCCCEEEEEEcCCC---CEE--EEEECCCcEEEEECCCCeE-----EEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 92 -HLDYIRTVQFHHEY---PWI--VSASDDQTIRIWNWQSRTC-----ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 92 -h~~~I~~v~fs~d~---~~l--~s~s~Dg~I~iwd~~s~~~-----i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
.......+.|+.|+ .+. +....-+.|+.|++..... ..........|.+++.+++|++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 22356678888776 322 2333345666665432211 111122335799999999999999999999999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~ 236 (1208)
+++..+.+.. .+..+.|..-|+.+.|+|+.+++++.+.+....+..+.-.
T Consensus 307 i~~~~~lq~~--------------------------~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 307 IYDAKSLQRL--------------------------QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEeceeeee--------------------------EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9998876543 4466789999999999999999999998988888776553
No 221
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=4.6e-14 Score=152.80 Aligned_cols=200 Identities=16% Similarity=0.251 Sum_probs=157.8
Q ss_pred EEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEec-
Q 000961 55 RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG- 133 (1208)
Q Consensus 55 ~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~- 133 (1208)
.+++|+.+|..+++|+.||+++||++.+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++.+++..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 679999999999999999999999998888888888899999999999999999999999 999999999987776652
Q ss_pred -CCCCEEEEEEeeCC---CE--EEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCe
Q 000961 134 -HNHYVMCASFHPKE---DL--VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1208)
Q Consensus 134 -h~~~V~~l~~~p~~---~~--l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 207 (1208)
.+.....+.|+.++ .+ .+.....+.|+.||+...+.....+ ..........|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~----------------------~~~~~~~~~si 284 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR----------------------LRKKIKRFKSI 284 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc----------------------hhhhhhccCcc
Confidence 23345667787766 22 2333345678887775433211000 00111234579
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 208 ~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
++++.+++|++++.|+.||.|.+++..+-+.. ...-+.|...|+.+.|+|+.+++++.+.+....|..+.
T Consensus 285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eeEEEcCCCcEEEEeccCCcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999999999999999999999999887752 33446799999999999999999999999888887654
No 222
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=1.6e-12 Score=138.30 Aligned_cols=239 Identities=13% Similarity=0.207 Sum_probs=180.9
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC--CeEEEEECCCCe
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWNYKMHR 84 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D--g~I~vWd~~~~~ 84 (1208)
+....+..+.|+.+...|..|+.|| -++|+................|.-+-|+.. ++|..+.+ +.+++.+++.+.
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence 4556788889999999999999888 677776554332222223334555556544 56555543 569999998887
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEec---CCCCEEEEEEeeCCCEEEEEE--CCCeE
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG---HNHYVMCASFHPKEDLVVSAS--LDQTV 159 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~---h~~~V~~l~~~p~~~~l~s~s--~Dg~V 159 (1208)
.+..+. ....|.+|.++.+ +|+++-.+. |+|||+++.+.+.++.. +...+.++++++.+.+++.=+ ..|.|
T Consensus 80 ~ICe~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 80 TICEIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEEe-cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 777765 5667888988754 566666554 99999999999888753 445576777776667887633 46899
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCce
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMNETKA 238 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~-I~iwd~~~~~~ 238 (1208)
.+||..+.+.. ..+..|.+.+.+++|+++|.+|+++++.|+ |+++.+.+++.
T Consensus 156 ~l~d~~nl~~v---------------------------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 156 VLFDTINLQPV---------------------------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK 208 (391)
T ss_pred EEEEcccceee---------------------------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence 99999876543 367799999999999999999999999997 69999999987
Q ss_pred eEEEeecCc--CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 239 WEVDTLRGH--MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 239 ~~~~~l~~h--~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
+..++.- ...|.+++|+|++++|++.|..++|++|.+.+..
T Consensus 209 --l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 209 --LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred --eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 6666532 3468899999999999999999999999987543
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.9e-14 Score=155.33 Aligned_cols=236 Identities=17% Similarity=0.194 Sum_probs=166.1
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEe-cccccCEEEEEEEc--CCCEEEEEECCCeEEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd 79 (1208)
+.|+||++-|.|+.|+.+|.+|++|+.|-.+.|||+...++++.+ .+|.+.|.++.|-| +...+++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 468999999999999999999999999999999999988888887 48999999999988 455899999999999999
Q ss_pred CCCC----------eEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeE-------EEEE---ecCCCCE
Q 000961 80 YKMH----------RCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTC-------ISVL---TGHNHYV 138 (1208)
Q Consensus 80 ~~~~----------~~~~~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~-------i~~l---~~h~~~V 138 (1208)
+... .....+..|...|..++-.|++ ..+.+++.||+|+-+|++.... ...+ ...--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9741 2344556799999999999999 5788999999999999975321 1111 1112346
Q ss_pred EEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeec--cccccccccccc-eEEEEEeccCCCeEEEEEcC
Q 000961 139 MCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS--QMNTDLFGGVDA-VVKYVLEGHDRGVNWAAFHP 214 (1208)
Q Consensus 139 ~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~sp 214 (1208)
.|+..+|.. .+|++|+.|-..++||.+...+............. ......|..... ............++-++|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 788999966 78999999999999996432221111100000000 000000100000 00000111112356789999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce
Q 000961 215 TLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 215 ~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
+|.-|++.-..-.|+++|+..++.
T Consensus 284 NGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 284 NGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCcEEEEeeCCeEEEEEeecCCCC
Confidence 998887777777899999988775
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.5e-12 Score=151.57 Aligned_cols=235 Identities=8% Similarity=-0.012 Sum_probs=162.2
Q ss_pred CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEE---CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000961 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG---DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs---~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~ 107 (1208)
..|.+||+.... .+.+..+...+.+.+|||||+.|+..+ .+..|.+|++.+++... +....+.+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 379999976443 344556778899999999999988754 34579999998875432 2223334557899999998
Q ss_pred EEEE-ECCC--cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC-CeEEEE--ECCCCccccccCCCcceee
Q 000961 108 IVSA-SDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-QTVRVW--DIGALRKKTVSPADDILRL 181 (1208)
Q Consensus 108 l~s~-s~Dg--~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D-g~V~vw--dl~~~~~~~~~~~~~~~~~ 181 (1208)
|+.. +.+| .|.+||+.+++.... ..+...+....|+|+|+.|+..+.+ +...+| |+.+....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----------- 324 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----------- 324 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-----------
Confidence 8865 4344 588999988876544 4444567889999999988877754 444444 55443211
Q ss_pred ccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeecCcCCCeEEEEEcc
Q 000961 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d---g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp 258 (1208)
.+..+........|+|+|++|+..+.+ ..|.+||+.++... .+... .......|+|
T Consensus 325 -----------------~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~---~Lt~~-~~~~~p~~Sp 383 (429)
T PRK03629 325 -----------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ---VLTDT-FLDETPSIAP 383 (429)
T ss_pred -----------------EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE---EeCCC-CCCCCceECC
Confidence 112233345578999999999887643 35888999887742 23221 2234678999
Q ss_pred CCCEEEEEeCCCc---EEEEeCCCCeeEEEeecCCCCEEEEEEeCC
Q 000961 259 KQDIIVSNSEDKS---IRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 259 ~g~~l~sgs~dg~---I~vwd~~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
||++|+.++.++. +.++++ ++.....+..+.+.+...+|+|-
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 9999999988764 677777 45556667667777888888873
No 225
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.1e-13 Score=152.56 Aligned_cols=226 Identities=19% Similarity=0.271 Sum_probs=164.9
Q ss_pred EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE-ccCCCCEEEEEEcCC--CCEEEEEECCCcEEEE
Q 000961 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL-LGHLDYIRTVQFHHE--YPWIVSASDDQTIRIW 120 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l-~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iw 120 (1208)
...+.+|.+.|.|+.|+.+|.+|++|++|-.+.|||.-..+++..+ +||...|.++.|-|. ...+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4567899999999999999999999999999999999988888776 689999999999985 4588999999999999
Q ss_pred ECCCC----------eEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeecccccccc
Q 000961 121 NWQSR----------TCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189 (1208)
Q Consensus 121 d~~s~----------~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1208)
|+.+. .....+..|...|..++-.|++ +.+.+++.||+++-+|++......... .... .+.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~--~~~~------~l~ 194 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE--DCPS------ILV 194 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc--cccH------HHH
Confidence 99842 3445567899999999999988 899999999999999998743321110 0000 000
Q ss_pred ccccceEEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC--------c---ee-----EEE-eecCcC---
Q 000961 190 GGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNET--------K---AW-----EVD-TLRGHM--- 248 (1208)
Q Consensus 190 ~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~L~sgs~dg~I~iwd~~~~--------~---~~-----~~~-~l~~h~--- 248 (1208)
.....--...++..+|.. .+|++|+.|-..++||.+.. . +. .+. -..+|.
T Consensus 195 ---------ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 195 ---------NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS 265 (758)
T ss_pred ---------HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc
Confidence 011111346788999965 47899999999999994211 1 00 011 112222
Q ss_pred -----C---CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 000961 249 -----N---NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 249 -----~---~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~ 286 (1208)
. -++-+.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1 1456789999887776655567999998876655443
No 226
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.52 E-value=1.4e-09 Score=132.01 Aligned_cols=307 Identities=12% Similarity=0.153 Sum_probs=182.0
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCe--EEEEECC-CCe---EEEEe--cccccCEEEEEEEcCCCEEEEEECCCeEEEEE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGV--IQLWDYR-MGT---LIDRF--DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~--I~iWd~~-~g~---~i~~l--~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1208)
|++.-.+...+|....++++...+. +..+.+. .++ ....+ ...++.|.++.|..++.-++.+..+|.|.+-|
T Consensus 17 ~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd 96 (1265)
T KOG1920|consen 17 GPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVD 96 (1265)
T ss_pred CCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEc
Confidence 3333455566666666666643322 2222221 122 11122 23446899999999999999999999999998
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC----C-------------------CeEEEEEecC--
Q 000961 80 YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ----S-------------------RTCISVLTGH-- 134 (1208)
Q Consensus 80 ~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~----s-------------------~~~i~~l~~h-- 134 (1208)
.++.... ....-...|.+++||||+.+++..+.++++.+-.-. . |+.-..+.|.
T Consensus 97 ~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 97 PETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred cccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchh
Confidence 8765432 223356789999999999999999988888765321 1 0111111110
Q ss_pred -------------------CCCEEEEEEeeCCCEEEEEE-----CCCeEEEEECCCCccccccCCCcceeeccccccccc
Q 000961 135 -------------------NHYVMCASFHPKEDLVVSAS-----LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG 190 (1208)
Q Consensus 135 -------------------~~~V~~l~~~p~~~~l~s~s-----~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1208)
.+.=+++.|-.||.++++.. ..+.|+|||-.+ ....
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns------------------- 235 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNS------------------- 235 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhc-------------------
Confidence 11124589999999988832 237899999763 1111
Q ss_pred cccceEEEEEeccCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeE-EEeecCcCCCeEEEEEccCCCEEEE-
Q 000961 191 GVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA---DDRQVKLWRMNETKAWE-VDTLRGHMNNVSCVMFHAKQDIIVS- 265 (1208)
Q Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs---~dg~I~iwd~~~~~~~~-~~~l~~h~~~V~~l~~sp~g~~l~s- 265 (1208)
.-+...+.-.+++|-|.|.++++-. +|+.|.++.-++-..-+ ...++.....|..++|+.++..|++
T Consensus 236 --------~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~ 307 (1265)
T KOG1920|consen 236 --------TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV 307 (1265)
T ss_pred --------ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeee
Confidence 1111223345789999999988764 45679898876543211 1122223344899999999999988
Q ss_pred --EeCCCcEEEEeCCCCeeE--EEeecCCCCEEEEEEeCCC--CEEEEEECCCeeeEee--CCCcceEEecCCEEEEEeC
Q 000961 266 --NSEDKSIRVWDVTKRTGV--QTFRREHDRFWILASHPEM--NLLAAGHDSGMIVFKL--ERERPAFAVSGDSLFYAKD 337 (1208)
Q Consensus 266 --gs~dg~I~vwd~~~~~~~--~~~~~~~~~i~~la~sp~~--~~la~g~~~gi~v~~l--~~~~~~~s~~~~~L~~~~d 337 (1208)
......|++|-+.+.... +.+....... +.|+|.. ++.+.+..+...++++ ...+. ..++...++...
T Consensus 308 ~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~t~~s--~~d~S~~~VIDg 383 (1265)
T KOG1920|consen 308 TSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWTTDRS--PNDGSTVYVIDG 383 (1265)
T ss_pred ecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEEEeeecc--CCCCceEEEEeC
Confidence 455556999998765432 2233222222 7888843 3344443333333332 22221 233445555577
Q ss_pred CeEEEEEccC
Q 000961 338 RFLRYYEFST 347 (1208)
Q Consensus 338 ~~i~v~d~~~ 347 (1208)
..+.+.++.-
T Consensus 384 s~llvT~ls~ 393 (1265)
T KOG1920|consen 384 SRLLVTPLSL 393 (1265)
T ss_pred CEEEEecchh
Confidence 7788877765
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.7e-12 Score=134.66 Aligned_cols=265 Identities=13% Similarity=0.194 Sum_probs=172.8
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCcccc
Q 000961 94 DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKT 171 (1208)
Q Consensus 94 ~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~-~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~ 171 (1208)
..++.++||+.-..++++..|-+|++||-.+ ++...++ .....|+|++|-|.+ ..|++|+. +-|.+|..+......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4578899999777788999999999999766 5555554 345679999999976 56777775 558999875422111
Q ss_pred ccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCcCCC
Q 000961 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNN 250 (1208)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~~ 250 (1208)
. +... ++........-.+| ..|+++.|.+||..+++++ .|..|.|||.+++...++. ....+.
T Consensus 177 r------------~~~~-~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg 240 (445)
T KOG2139|consen 177 R------------NIRM-MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI--PKGLGG 240 (445)
T ss_pred c------------cccc-ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc--ccCCCc
Confidence 0 0000 00011111233445 7899999999999999887 4778999999999864443 334567
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCC
Q 000961 251 VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGD 330 (1208)
Q Consensus 251 V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~ 330 (1208)
++-+.|||||.+|.+++-|+..++|...............+++....|+|+|++|.....+.-+++.+.-........+
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~- 319 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLR- 319 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccC-
Confidence 8899999999999999999999999544332222333345599999999999998877766666665543221111100
Q ss_pred EEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecC
Q 000961 331 SLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD 387 (1208)
Q Consensus 331 ~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~ 387 (1208)
.. ....+-+-|+..-.. ..-++. .-+.+.+++|.|.|.++++.....
T Consensus 320 ---~~~~k~~lliaDL~e~ti---~ag~~l----~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 320 ---PQSIKRVLLIADLQEVTI---CAGQRL----CCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred ---cccceeeeeeccchhhhh---hcCccc----ccCccceeeECCCCCEEEEEEcCC
Confidence 00 111122333332110 000000 012789999999999999987643
No 228
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=2.2e-11 Score=134.58 Aligned_cols=373 Identities=12% Similarity=0.155 Sum_probs=239.0
Q ss_pred EEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC
Q 000961 34 QLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD 113 (1208)
Q Consensus 34 ~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~ 113 (1208)
.+|+..+...-..+....-++..++|||.|.+|++.... .|.+|....+..+..+. | ..|..+.|+|.+++|.+-+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeecc
Confidence 456655555555666578899999999999999988764 59999988877665554 3 45899999999999998765
Q ss_pred CC---------------cEEEEECCCCeEEEEEecCCCC--EE-EEEEeeCCCEEEEEECCCeEEEEECCCCccccccCC
Q 000961 114 DQ---------------TIRIWNWQSRTCISVLTGHNHY--VM-CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPA 175 (1208)
Q Consensus 114 Dg---------------~I~iwd~~s~~~i~~l~~h~~~--V~-~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~ 175 (1208)
.+ .+.+||..+|..+..+.+...+ .. -+.|+-++.+++-. ....+.|+++.. ..... +
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~-n~~~~-p- 167 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITD-NIEEH-P- 167 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCC-ccccC-c-
Confidence 43 4999999999999988776555 33 57788887766655 345788998722 21100 0
Q ss_pred CcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEE
Q 000961 176 DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVM 255 (1208)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~ 255 (1208)
...+ ...+|....|+|.++. ..+..|
T Consensus 168 ---------------------~~~l--r~~gi~dFsisP~~n~-------~~la~~------------------------ 193 (561)
T COG5354 168 ---------------------FKNL--RPVGILDFSISPEGNH-------DELAYW------------------------ 193 (561)
T ss_pred ---------------------hhhc--cccceeeEEecCCCCC-------ceEEEE------------------------
Confidence 0011 1345677777776521 111222
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEE
Q 000961 256 FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA 335 (1208)
Q Consensus 256 ~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~ 335 (1208)
.|.- .+..+.+++|.+..+..+.+.....-.-..+.|++.|+++.+-...... . +.-++
T Consensus 194 -tPEk-----~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~k-----s---------nKsyf- 252 (561)
T COG5354 194 -TPEK-----LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTK-----S---------NKSYF- 252 (561)
T ss_pred -cccc-----CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeee-----c---------cccee-
Confidence 1210 1233445555555444443322222222356677777765543211100 0 00001
Q ss_pred eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCce
Q 000961 336 KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLG 415 (1208)
Q Consensus 336 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i 415 (1208)
.+..++++++... .+++.. + +.++|...+|+|+++.+++++|.....+.++++.++. ........=
T Consensus 253 gesnLyl~~~~e~-~i~V~~----~---~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------~~~~Pe~~r 318 (561)
T COG5354 253 GESNLYLLRITER-SIPVEK----D---LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------RFYFPEQKR 318 (561)
T ss_pred ccceEEEEeeccc-ccceec----c---ccccceeeeecccCCceeEEecccccceeecccccce------EEecCCccc
Confidence 3456777777632 222221 1 1338999999999999999998888889999988652 133333344
Q ss_pred EEEEEEeCCcEEEEEcCC---CEEEEEecCCceee--eecCCcceEEEEEeCCccEEEEe--------CCeEEEEEcCCC
Q 000961 416 GSAIFIARNRFAVLDKSS---NQVLVKNLKNEVVK--KSILPIAADAIFYAGTGNLLCRA--------EDRVVIFDLQQR 482 (1208)
Q Consensus 416 ~~~~fs~d~~~l~~~~~d---g~I~Iwdl~~~~~~--~l~~~~~v~~i~~s~dg~~Las~--------dg~v~lwdl~~~ 482 (1208)
..+.|+|.+++++.++-| |.+.+||..++... .+.+. ..+-..|+|||+++-+. |..+.|||+...
T Consensus 319 NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 319 NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 568899999999886644 67999999976443 33333 45666799999999652 789999999655
Q ss_pred eEEEEEeCCCeeEEEECCCCCEEEEEe
Q 000961 483 LVLGDLQTPFVKYVVWSNDMESVALLS 509 (1208)
Q Consensus 483 ~~l~~~~~~~v~~v~ws~dg~~la~~s 509 (1208)
... ..+.+.|.|.|+++.+.+
T Consensus 398 ~~f------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 398 KVF------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred hhh------hhhhccccCCcccceeec
Confidence 433 456788999888765443
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=3.4e-11 Score=126.01 Aligned_cols=239 Identities=13% Similarity=0.295 Sum_probs=169.1
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEE-EECC------CeEEEEECCC
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDD------YKIKVWNYKM 82 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~D------g~I~vWd~~~ 82 (1208)
....+++|+.|..-+++|..+| .+||+..--+...+-..+.+.+.-+..--..++|+. ||.+ ..|.|||=..
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 3456799999999999998777 899997653332222223332222222223345543 3332 4799999767
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEEecC--CCCEEEEEEeeCCCEEEE-EECCCe
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-SRTCISVLTGH--NHYVMCASFHPKEDLVVS-ASLDQT 158 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~-s~~~i~~l~~h--~~~V~~l~~~p~~~~l~s-~s~Dg~ 158 (1208)
.+++.++. ...+|.++.+.++. |++.- .+.|.||... +-+.++.+... ...+.++.-+.+..+|+. |-.-|.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~r--iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRDR--IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCCe--EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 78888776 67889999999874 55554 6789999987 44555555422 233444433333344444 445689
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCc
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMNETK 237 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~-I~iwd~~~~~ 237 (1208)
|++-|+...+.. .......|+..|.|++.+-+|.++++++..|+ |+|||..++.
T Consensus 161 vQi~dL~~~~~~-------------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 161 VQIVDLASTKPN-------------------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred EEEEEhhhcCcC-------------------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence 999999765432 11367899999999999999999999999997 7999999998
Q ss_pred eeEEEeecC--cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 238 AWEVDTLRG--HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 238 ~~~~~~l~~--h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
. +..++. ....|.+++|||+..+|+++|..|+++|+.+...
T Consensus 216 ~--l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 216 L--LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred E--eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 7 555543 3457999999999999999999999999988653
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=7e-12 Score=150.02 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=163.2
Q ss_pred CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC---CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000961 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~---Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~ 107 (1208)
..|.+||. .|...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|||+.
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 47999997 45555667788899999999999999888763 468999999887653 45556677888999999997
Q ss_pred EE-EEECCCc--EEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-CC--eEEEEECCCCccccccCCCcceee
Q 000961 108 IV-SASDDQT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRL 181 (1208)
Q Consensus 108 l~-s~s~Dg~--I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-Dg--~V~vwdl~~~~~~~~~~~~~~~~~ 181 (1208)
|+ +.+.++. |.+||+.+++. ..+..+........|+|+|+.|+..+. +| .|.+||+.+....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----------- 327 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----------- 327 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-----------
Confidence 75 4555554 77779887765 445656666778999999998887764 33 5777787653321
Q ss_pred ccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeecCcCCCeEEEEEcc
Q 000961 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d---g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp 258 (1208)
.+..+...+....|+|+|+.|+..+.+ ..|.+||..++.. ..+. ....+....|+|
T Consensus 328 -----------------~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt-~~~~~~~p~~sp 386 (435)
T PRK05137 328 -----------------RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILT-SGFLVEGPTWAP 386 (435)
T ss_pred -----------------EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---Eecc-CCCCCCCCeECC
Confidence 122234456678899999999887643 3588888866543 2222 223467889999
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeeEEEeecCCCCEEEEEEeC
Q 000961 259 KQDIIVSNSED------KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 259 ~g~~l~sgs~d------g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp 300 (1208)
||+.|+..+.+ ..+.++|+..+.. ..+. ....+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 99998776543 2578888765544 3443 233455666665
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=6.3e-11 Score=124.01 Aligned_cols=239 Identities=18% Similarity=0.290 Sum_probs=165.2
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEE-EECC------CcEEEEECCCC
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVS-ASDD------QTIRIWNWQSR 125 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s-~s~D------g~I~iwd~~s~ 125 (1208)
...+++|+.|...+++|.++| .+||+.+--+...+...+.+.+.-+...--.++++. |+.+ +.|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345699999999999998876 899998753332222222222221111122334443 3322 47999996677
Q ss_pred eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCC-ccccccCCCcceeeccccccccccccceEEEEEeccC
Q 000961 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL-RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (1208)
Q Consensus 126 ~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 204 (1208)
+++..+. -..+|.++.+.++ .|++.- .+.|.||..... +.... .......
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~-------------------------~et~~NP 136 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHV-------------------------IETRSNP 136 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheee-------------------------eecccCC
Confidence 7777776 5678999999854 455554 789999998742 22110 0111123
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCc-EEEEeCCCCee
Q 000961 205 RGVNWAAFHPTLPLIVS-GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-IRVWDVTKRTG 282 (1208)
Q Consensus 205 ~~V~~l~~sp~g~~L~s-gs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~-I~vwd~~~~~~ 282 (1208)
.++.+++-+.+..+|+. |-.-|.|+|-|+...+.-....+..|.+.|.|++.+-+|.++|++|..|+ |||||..+|+.
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE
Confidence 33433333334445554 34578999999987764224678899999999999999999999999998 79999999999
Q ss_pred EEEeecCCC--CEEEEEEeCCCCEEEEEECCC-eeeEeeCCC
Q 000961 283 VQTFRREHD--RFWILASHPEMNLLAAGHDSG-MIVFKLERE 321 (1208)
Q Consensus 283 ~~~~~~~~~--~i~~la~sp~~~~la~g~~~g-i~v~~l~~~ 321 (1208)
++.+++..+ .+.+++|||+..+||+.++.| +.+|.+...
T Consensus 217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999987654 599999999999999998876 447776553
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=5.4e-14 Score=152.80 Aligned_cols=229 Identities=17% Similarity=0.277 Sum_probs=191.0
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEec
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~ 133 (1208)
-..+.++.+|.+++.|+..|.|-.+|+.+++....+. -...|+++.|.++.++++++- ...++||| ..|..+..++.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhh
Confidence 4678999999999999999999999999999998886 456799999999988888775 56899999 67888888886
Q ss_pred CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEc
Q 000961 134 HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (1208)
Q Consensus 134 h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (1208)
| ..|..+.|.|..-+|++++..|.++--|+++++... .+....+.+..++-+
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa---------------------------~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA---------------------------SIRTGAGRTDVMKQN 260 (545)
T ss_pred c-CchhhhcccchhheeeecccCCceEEEeechhhhhH---------------------------HHHccCCccchhhcC
Confidence 6 468999999999999999999999999999877543 233345677788888
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCE
Q 000961 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (1208)
Q Consensus 214 p~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i 293 (1208)
|-...+-+|...|+|.+|..+.... +..+..|.++|+++++.++|.++++.+.|..++|||++....+.++.. ....
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skeP--LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a 337 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEP--LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA 337 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcch--HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence 9888899999999999999998886 777889999999999999999999999999999999998887777665 4455
Q ss_pred EEEEEeCCCCEEEEEECCCeeeEe
Q 000961 294 WILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 294 ~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
..+++|..| +||.+..+.+.+|.
T Consensus 338 ~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 SNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred ccccccccc-ceeeecCCeeeeeh
Confidence 667777554 56666655555553
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=4.6e-12 Score=151.36 Aligned_cols=234 Identities=11% Similarity=0.023 Sum_probs=161.4
Q ss_pred CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC---CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000961 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~---Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~ 107 (1208)
..|.+||.. +...+.+..|...+.+.+|+|+|+.|+..+. +..|.+||+.+++.. .+..+.+...+..|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence 469999974 5445566678888999999999999998764 347999999887653 33334455567899999997
Q ss_pred EE-EEECCC--cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-CCe--EEEEECCCCccccccCCCcceee
Q 000961 108 IV-SASDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQT--VRVWDIGALRKKTVSPADDILRL 181 (1208)
Q Consensus 108 l~-s~s~Dg--~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-Dg~--V~vwdl~~~~~~~~~~~~~~~~~ 181 (1208)
|+ +.+.+| .|++||+.+++.. .+..+........|+|+|+.|+.++. +|. |.++|+.+.+...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~---------- 330 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER---------- 330 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----------
Confidence 76 445555 5999999888754 45555555678899999998887764 444 5555655432211
Q ss_pred ccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeecCcCCCeEEEEEcc
Q 000961 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg---~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp 258 (1208)
... +.......+|+|+|++|+..+.++ .|.+||+.+++. ..+. +........|+|
T Consensus 331 ----------------lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~~Lt-~~~~~~~p~~sp 388 (433)
T PRK04922 331 ----------------LTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---RTLT-PGSLDESPSFAP 388 (433)
T ss_pred ----------------eec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe---EECC-CCCCCCCceECC
Confidence 111 222344689999999998876443 599999988774 2232 222345679999
Q ss_pred CCCEEEEEeCC---CcEEEEeCCCCeeEEEeecCCCCEEEEEEeC
Q 000961 259 KQDIIVSNSED---KSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 259 ~g~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp 300 (1208)
||++++..+.+ +.|.+++.. +.....+..+.+.+...+|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 99998877653 358888875 444555555555666777776
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=2.6e-10 Score=131.46 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=190.2
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeecccccc
Q 000961 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 108 l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
+++-..++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+...
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---------------- 72 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---------------- 72 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE----------------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE----------------
Confidence 3455668999999999999999998655444557899999999999999999999998866432
Q ss_pred ccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecC-------cCCCeEEEEEccC
Q 000961 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRG-------HMNNVSCVMFHAK 259 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~-------h~~~V~~l~~sp~ 259 (1208)
.+. -......+++++||++++++. .++.+.++|..+.+. +..+.. ....+.++..+|.
T Consensus 73 -----------~i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 73 -----------TIK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP--VKTIPTGGMPVDGPESRVAAIVASPG 138 (369)
T ss_dssp -----------EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E--EEEEE--EE-TTTS---EEEEEE-SS
T ss_pred -----------EEe-cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccc--eeecccccccccccCCCceeEEecCC
Confidence 111 123457899999999988775 689999999999876 443332 2346778888888
Q ss_pred CCEEEEEeC-CCcEEEEeCCCCeeEEE-eecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeC
Q 000961 260 QDIIVSNSE-DKSIRVWDVTKRTGVQT-FRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (1208)
Q Consensus 260 g~~l~sgs~-dg~I~vwd~~~~~~~~~-~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d 337 (1208)
...++..-. .+.|.+.|......+.. ............|+|+++++.++.. ..
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-------------------------~s 193 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-------------------------GS 193 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-------------------------GG
T ss_pred CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc-------------------------cc
Confidence 885555544 58888888776554432 2223445678899999998877643 23
Q ss_pred CeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC-----CCCCCcccccccC
Q 000961 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD-----SIGRGDSVQDAKK 412 (1208)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~-----~~~~~~~~~~~~~ 412 (1208)
+.+-++|..+++...........+ ..+...+ .+|....+....+.....+-....... ...+.........
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~---~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPH---PGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBE---ETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred ceeEEEeeccceEEEEeecccccc---ccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 455566666655544433322111 1111211 222222122122211111122111110 1122222333333
Q ss_pred CceEEEEEEeCCcEEEEE----cCCCEEEEEecCC-ceeeeecCCc--ceEEEEEeCCccEEEEe----CCeEEEEEcCC
Q 000961 413 GLGGSAIFIARNRFAVLD----KSSNQVLVKNLKN-EVVKKSILPI--AADAIFYAGTGNLLCRA----EDRVVIFDLQQ 481 (1208)
Q Consensus 413 ~~i~~~~fs~d~~~l~~~----~~dg~I~Iwdl~~-~~~~~l~~~~--~v~~i~~s~dg~~Las~----dg~v~lwdl~~ 481 (1208)
+ ...+.-+|+++++... ...++|.++|.++ +..+++.... .+..+.|+++|+.+-.+ ++.|.+||..+
T Consensus 270 ~-glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 270 G-GLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp S-S--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred C-cceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 3 3678889999999888 4458899999995 4556665333 49999999999988442 45899999999
Q ss_pred CeEEEEEeC
Q 000961 482 RLVLGDLQT 490 (1208)
Q Consensus 482 ~~~l~~~~~ 490 (1208)
.+.+..+..
T Consensus 349 l~~~~~i~~ 357 (369)
T PF02239_consen 349 LKEKKRIPV 357 (369)
T ss_dssp TEEEEEEE-
T ss_pred cEEEEEEEe
Confidence 999998874
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.3e-12 Score=149.43 Aligned_cols=221 Identities=8% Similarity=0.009 Sum_probs=155.1
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEec---CCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEE-ECCC--eEEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDY--KIKV 77 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~---dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg--~I~v 77 (1208)
.+..+...+.+.+|||||++|+..+. +..|.+||+.+|+... +....+.+..+.|+|||+.|+.. +.+| .|.+
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 45556678999999999999987642 3579999998885433 22233345578999999988865 3344 5999
Q ss_pred EECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC-Cc--EEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE
Q 000961 78 WNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-QT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 78 Wd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D-g~--I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s 154 (1208)
||+++++.. .+..+...+....|+|||+.|+.++.+ +. |.++|+.+++. ..+..+.....+..|+|+|++|+..+
T Consensus 272 ~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 272 MDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred EECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEE
Confidence 999887654 444455677889999999988877764 44 55557766654 33444445567789999999988876
Q ss_pred CC---CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCc---E
Q 000961 155 LD---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ---V 228 (1208)
Q Consensus 155 ~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~---I 228 (1208)
.+ ..|.+||+.++.... +.. ........|+|||+.|+.++.++. +
T Consensus 350 ~~~g~~~I~~~dl~~g~~~~----------------------------Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQV----------------------------LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred ccCCCceEEEEECCCCCeEE----------------------------eCC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 54 358888987644221 111 112235789999999999987764 6
Q ss_pred EEEECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 229 ~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
.++++.... ...+.+|.+.+...+|+|-
T Consensus 401 ~~~~~~G~~---~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 401 NLVSTDGRF---KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEECCCCC---eEECccCCCCcCCcccCCC
Confidence 777776555 4566778888999999873
No 236
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.48 E-value=1e-09 Score=120.00 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=118.7
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 200 LEGHDRGVNWAAFHPTLPLIVSGADDR-QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 200 ~~~h~~~V~~l~~sp~g~~L~sgs~dg-~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
.-+|.++|.-..+..+++-++.|..|| .+-++|..+++ +..+...-+.|.++..+|+|++++++-....|.+.|+.
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 346778898888988888999999999 89999999988 67777888999999999999999999888899999999
Q ss_pred CCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecC
Q 000961 279 KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRR 358 (1208)
Q Consensus 279 ~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~ 358 (1208)
++.....-+...+-|+.+.|||+++++|-+-..|.. ...|+++|+.+++...+.+...
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~----------------------tq~Iklydm~~~Kiy~vTT~ta 489 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYY----------------------TQSIKLYDMDGGKIYDVTTPTA 489 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCccee----------------------eeeEEEEecCCCeEEEecCCcc
Confidence 998766556666789999999999999988766542 3456777777766544332211
Q ss_pred CCCCCCCcCCeEEEEcCCCCEEEEEE
Q 000961 359 PGSTSLNQSPRTLSYSPTENAVLICS 384 (1208)
Q Consensus 359 ~~~~~~~~~i~~l~~spdg~~llv~~ 384 (1208)
.-.+-+|.||++++...+
T Consensus 490 --------~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 490 --------YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred --------cccCcccCCCCcEEEEEe
Confidence 234456777777665544
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=5.3e-12 Score=150.27 Aligned_cols=235 Identities=9% Similarity=0.008 Sum_probs=159.7
Q ss_pred CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC---CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000961 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~ 107 (1208)
..|.+||. +|.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46888886 555556666788899999999999999887643 469999999886543 3334456678999999998
Q ss_pred EE-EEECCCcEEEEE--CCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-CCeEEEEECC--CCccccccCCCcceee
Q 000961 108 IV-SASDDQTIRIWN--WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQTVRVWDIG--ALRKKTVSPADDILRL 181 (1208)
Q Consensus 108 l~-s~s~Dg~I~iwd--~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-Dg~V~vwdl~--~~~~~~~~~~~~~~~~ 181 (1208)
|+ +.+.+|...||. ..++. ...+..+........|+|+|+.|+..+. +|...+|.+. +....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----------- 321 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----------- 321 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-----------
Confidence 86 456777766664 44444 4555556666677899999998886664 4666666653 21110
Q ss_pred ccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeecCcCCCeEEEEEcc
Q 000961 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg---~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp 258 (1208)
.... +.......+|+|+|++|+..+.++ .|.+||+.+++. ..+... .......|+|
T Consensus 322 ---------------~lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~~lt~~-~~~~~p~~sp 380 (427)
T PRK02889 322 ---------------RVTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---TALTDT-TRDESPSFAP 380 (427)
T ss_pred ---------------EEec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---EEccCC-CCccCceECC
Confidence 1111 122234578999999998877654 599999988774 223222 2346789999
Q ss_pred CCCEEEEEeCCC---cEEEEeCCCCeeEEEeecCCCCEEEEEEeCC
Q 000961 259 KQDIIVSNSEDK---SIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 259 ~g~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
+|+.|+..+.++ .+.+.+. ++.....+..+.+.+...+|+|-
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 999998877554 3555565 45555555555566677777763
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.6e-11 Score=134.66 Aligned_cols=321 Identities=14% Similarity=0.171 Sum_probs=215.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEE-----eC-----CCcEE
Q 000961 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN-----SE-----DKSIR 273 (1208)
Q Consensus 204 ~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sg-----s~-----dg~I~ 273 (1208)
..+++..+++++|++++.+. +..++|++...... +.+.... .+..+.|+|.|++|.+- .. .-.+.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~--~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV--VLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE--EEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 44577889999998777665 67799999988863 3333322 78999999999988752 11 23478
Q ss_pred EEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcc-------------eEEecC--CEEEEE---
Q 000961 274 VWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP-------------AFAVSG--DSLFYA--- 335 (1208)
Q Consensus 274 vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~-------------~~s~~~--~~L~~~--- 335 (1208)
+|++.++.....+......-|+..|+.|..+.+--..+.+.+|++...+. .+++.+ .++++-
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 99999866655555444444899999998877766666677776654322 222221 233332
Q ss_pred ---eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecC----------CCEEEEEEccCCCCC
Q 000961 336 ---KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD----------GGSYELYVIPKDSIG 402 (1208)
Q Consensus 336 ---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~----------~g~v~l~~l~~~~~~ 402 (1208)
....+++|........+.+..+..-. . .--.+.|++-|..|++...++ ..+++++.+.+...
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFk-a---dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~- 263 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFK-A---DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV- 263 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccc-c---ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE-
Confidence 44678888776433322222221111 1 334578999888777654431 23566666653221
Q ss_pred CCcccccccCCceEEEEEEeCCcE--EEEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEEEEe-----CCeEE
Q 000961 403 RGDSVQDAKKGLGGSAIFIARNRF--AVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA-----EDRVV 475 (1208)
Q Consensus 403 ~~~~~~~~~~~~i~~~~fs~d~~~--l~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las~-----dg~v~ 475 (1208)
. ..-...++|.+++|+++++- ++.|-.-.++.|+|+++..+..+. ..+-..+.|+|.|++++.. .|.+.
T Consensus 264 --~-V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 264 --S-VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred --E-EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceE
Confidence 1 12245789999999999954 444555678999999988776664 3367899999999999764 59999
Q ss_pred EEEcCCCeEEEEEeCCCeeEEEECCCCCEEEEEeC-------CeEEEEecCccceeeeecceeeeeeEEe
Q 000961 476 IFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSK-------HAIIIASKKLVHQCTLHETIRVKSGAWD 538 (1208)
Q Consensus 476 lwdl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~-------~~i~i~~~~~~~~~~~~e~~~iks~~wd 538 (1208)
+||+.+.+++..+.....+...|+|||+++++++. +++.||+..-..+...+-....-.+.|-
T Consensus 340 vwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~ 409 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWR 409 (566)
T ss_pred EEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeee
Confidence 99999999999999988899999999999988764 5688888776555433211123345664
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=8.9e-13 Score=144.35 Aligned_cols=310 Identities=18% Similarity=0.181 Sum_probs=216.1
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCEEEEEEeeCC--CEEEEEECCCeEEE
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKE--DLVVSASLDQTVRV 161 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~~h~~~V~~l~~~p~~--~~l~s~s~Dg~V~v 161 (1208)
....+.+|.+.|..|.|+..|..|+++|+|..|.+|||.+++....+ .+|...|....|-|.. ..+++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34467789999999999999999999999999999999998877666 5899999999998854 68999999999999
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeE
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWE 240 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~~ 240 (1208)
-.+....... -...+..|.++|..++.-|+.+ -|.+++.|+.+.-+|++......
T Consensus 214 s~i~~t~~~e------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 214 SEILETGYVE------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred eeecccccee------------------------cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 8764422111 0124567999999999999765 58899999999999998876644
Q ss_pred EEeecCcCC----CeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCee------EEEee------cCCCCEEEEEEeCC-C
Q 000961 241 VDTLRGHMN----NVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTG------VQTFR------REHDRFWILASHPE-M 302 (1208)
Q Consensus 241 ~~~l~~h~~----~V~~l~~sp~g~-~l~sgs~dg~I~vwd~~~~~~------~~~~~------~~~~~i~~la~sp~-~ 302 (1208)
....+.+.. ....++.+|... .+++++.|..+++||.+.-.. +..+. ...-.|++++++.+ +
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 444444333 467888898655 899999999999999764221 12222 12235889999954 4
Q ss_pred CEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEE-cCCCCEEE
Q 000961 303 NLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSY-SPTENAVL 381 (1208)
Q Consensus 303 ~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-spdg~~ll 381 (1208)
.++++-.+..+.+|.-..... ...... .++ + +....-..||.+ ...|..+-| -|...++
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G------~~p~~~---s~~-------~--~~~k~vYKGHrN-~~TVKgVNFfGPrsEyV- 409 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDG------SEPDPS---SPR-------E--QYVKRVYKGHRN-SRTVKGVNFFGPRSEYV- 409 (559)
T ss_pred ceeeeecccceEEeccccccC------CCCCCC---cch-------h--hccchhhccccc-ccccceeeeccCccceE-
Confidence 566666666666663222110 000000 000 0 011111223323 336777754 5666644
Q ss_pred EEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC
Q 000961 382 ICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1208)
Q Consensus 382 v~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1208)
++|++.|.|.||+-.+ ++++..+.+...-|.|+.=.|---.|++++-|..|+||.-.
T Consensus 410 -vSGSDCGhIFiW~K~t---~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 410 -VSGSDCGHIFIWDKKT---GEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -EecCccceEEEEecch---hHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 6677999999999765 34444456666678888888888899999999999999874
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.5e-10 Score=129.80 Aligned_cols=361 Identities=11% Similarity=0.170 Sum_probs=231.4
Q ss_pred eEEEEECCCCeEEEEEccC---CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEE
Q 000961 74 KIKVWNYKMHRCLFTLLGH---LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150 (1208)
Q Consensus 74 ~I~vWd~~~~~~~~~l~~h---~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l 150 (1208)
.+.+|+........+...+ ..+++..+++++|++++.+ .++.++|++..++..+.+.... .+.++.|+|.+++|
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL 88 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYL 88 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeeccccccc
Confidence 5778876543333333333 4457788899999766665 5778999999888644444432 78999999999888
Q ss_pred EEE-----ECC-----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEE
Q 000961 151 VSA-----SLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (1208)
Q Consensus 151 ~s~-----s~D-----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~ 220 (1208)
.+= ..+ -.+.+|++.+...... .......+ ++..|++|.. ++
T Consensus 89 ~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~--------------------------~q~k~Q~~-W~~qfs~dEs-l~ 140 (566)
T KOG2315|consen 89 LTWEPWAIYGPKNASNPNVLVYNVETGVQRSQ--------------------------IQKKMQNG-WVPQFSIDES-LA 140 (566)
T ss_pred ccccccccccCCCCCCCceeeeeeccceehhh--------------------------eehhhhcC-cccccccchh-hh
Confidence 751 112 2356777766222110 11112222 5788888865 33
Q ss_pred EEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCC--EEEE-----EeCCCcEEEEeCCCCeeEEEee---cCC
Q 000961 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD--IIVS-----NSEDKSIRVWDVTKRTGVQTFR---REH 290 (1208)
Q Consensus 221 sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~--~l~s-----gs~dg~I~vwd~~~~~~~~~~~---~~~ 290 (1208)
.--..+.+.+|+..+.+. ..-.-|...|+.+.+||.+. .+++ .|.-+.+++|.......-+.+. -..
T Consensus 141 arlv~nev~f~~~~~f~~---~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk 217 (566)
T KOG2315|consen 141 ARLVSNEVQFYDLGSFKT---IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK 217 (566)
T ss_pred hhhhcceEEEEecCCccc---eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc
Confidence 333456799999988653 33344677899999998733 3443 3455679999876222111110 011
Q ss_pred CCEEEEEEeCCCCEEE--EEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCC
Q 000961 291 DRFWILASHPEMNLLA--AGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSP 368 (1208)
Q Consensus 291 ~~i~~la~sp~~~~la--~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i 368 (1208)
..-..+.|.+-|+-|. +.++ ++.. +.-+| .+.+++++++.+ .. ..+++.+ +++|
T Consensus 218 adkvqm~WN~~gt~LLvLastd-------VDkt--------n~SYY-GEq~Lyll~t~g-~s-~~V~L~k------~GPV 273 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTD-------VDKT--------NASYY-GEQTLYLLATQG-ES-VSVPLLK------EGPV 273 (566)
T ss_pred cceeEEEeccCCceEEEEEEEe-------ecCC--------Ccccc-ccceEEEEEecC-ce-EEEecCC------CCCc
Confidence 2224567887666332 2221 0000 00111 355677777763 22 2444443 4499
Q ss_pred eEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcC---CCEEEEEecCC-c
Q 000961 369 RTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKS---SNQVLVKNLKN-E 444 (1208)
Q Consensus 369 ~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~---dg~I~Iwdl~~-~ 444 (1208)
.++.|+|+++.++|+.|..-..+.||++..... ++-..++-.++-|+|.|++++.++- -|.+.|||+.+ +
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v------~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV------FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCCCCEe------EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 999999999999999999999999999986542 4445556678999999999988764 37899999985 3
Q ss_pred eeeeecCCcceEEEEEeCCccEEEEe--------CCeEEEEEcCCCeEEEEEeCC-CeeEEEECC
Q 000961 445 VVKKSILPIAADAIFYAGTGNLLCRA--------EDRVVIFDLQQRLVLGDLQTP-FVKYVVWSN 500 (1208)
Q Consensus 445 ~~~~l~~~~~v~~i~~s~dg~~Las~--------dg~v~lwdl~~~~~l~~~~~~-~v~~v~ws~ 500 (1208)
++.++... ..+-..|+|||.++++. |+.++||+. +|+.+..-... ....+.|-|
T Consensus 348 ~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 348 LIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred hccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeee
Confidence 44444433 45567799999999763 899999998 67777666554 477888875
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.2e-11 Score=147.89 Aligned_cols=221 Identities=13% Similarity=0.051 Sum_probs=154.7
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEec---CCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEE-EECCC--eEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDY--KIK 76 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~---dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg--~I~ 76 (1208)
+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +..+.+...+..|+|+|+.++. .+.+| .|.
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 456677788999999999999998763 3469999998876543 3344555668899999997764 45444 699
Q ss_pred EEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CCc--EEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEE
Q 000961 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg~--I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~ 153 (1208)
+||+.+++. ..+..+........|+||+++|+.++. +|. |.++|+.+++... +..+.......+|+|+|++|+..
T Consensus 276 ~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEE
Confidence 999988764 445556666678999999998887764 444 6777777766433 33334455678999999999887
Q ss_pred ECCC---eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC---Cc
Q 000961 154 SLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQ 227 (1208)
Q Consensus 154 s~Dg---~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d---g~ 227 (1208)
+.++ .|.+||+.+.+... +. +........|+|+|+.++..+.+ +.
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~~----------------------------Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVRT----------------------------LT-PGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred ECCCCceeEEEEECCCCCeEE----------------------------CC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 6543 68999987644221 11 11123356899999988877653 35
Q ss_pred EEEEECCCCceeEEEeecCcCCCeEEEEEcc
Q 000961 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp 258 (1208)
+.+++..... ...+..+.+.+...+|+|
T Consensus 405 L~~~~~~g~~---~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDGRV---RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECCCCc---eEEcccCCCCCCCCccCC
Confidence 7778876544 444555566777788876
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.2e-11 Score=145.72 Aligned_cols=221 Identities=13% Similarity=0.047 Sum_probs=156.9
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEec---CCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEE-EEECCC--eEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDY--KIK 76 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~---dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg--~I~ 76 (1208)
+.+..|...+.+.+|||||++|+..+. +..|.+||+.+|+.. .+..+.+.+.+.+|+|+|+.|+ +.+.++ .|.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 457788889999999999999988753 468999999888653 4556777888999999999776 445454 488
Q ss_pred EEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEE
Q 000961 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg--~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~ 153 (1208)
+||+.+++. ..+..+........|+||+++|+..+. +| .|.+||+.+++.. .+..+...+....|+|+|+.|+..
T Consensus 274 ~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEE
Confidence 889887765 456666667788999999999887774 33 6888898766543 344345566778999999999887
Q ss_pred ECC---CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC-----
Q 000961 154 SLD---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD----- 225 (1208)
Q Consensus 154 s~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d----- 225 (1208)
+.+ ..|.+||+.+.... .+. ....+....|+|+|+.|+..+.+
T Consensus 352 ~~~~~~~~i~~~d~~~~~~~----------------------------~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGER----------------------------ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred EcCCCceEEEEEECCCCceE----------------------------ecc-CCCCCCCCeECCCCCEEEEEEccCCCCC
Confidence 654 35778887543211 111 11235678999999988776543
Q ss_pred -CcEEEEECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 226 -RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 226 -g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
..+.++++.++.. ..+. ..+.+...+|+|-
T Consensus 403 ~~~L~~~dl~g~~~---~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 403 APKLYTVDLTGRNE---REVP-TPGDASDPAWSPL 433 (435)
T ss_pred cceEEEEECCCCce---EEcc-CCCCccCcccCCC
Confidence 2577788876653 3333 2445667788763
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=3.1e-10 Score=135.89 Aligned_cols=199 Identities=22% Similarity=0.350 Sum_probs=159.8
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEeccccc----CEEEEEEEcCCCEEEEEECCCeEEEEECCCCe
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDG----PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~----~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1208)
++.|....+.-+...++.++.+..+.+||...+........... ...-+.++++.-++++|+.-+.|.+|+....+
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 34455555666677889999999999999988877766643221 12223346666689999999999999987433
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE-EEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEE
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~-~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwd 163 (1208)
.-..+.+|.+.|..+.|+.||.+++++|+|.++|+|++.+++... +..+|+..|..+.|+|+ .+++++.|.+.++|+
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence 334688999999999999999999999999999999999988776 77899999999999988 899999999999997
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
....... ...+|. +.+..++.+++...+++++.|+.+++|++....
T Consensus 245 ~~~~~l~----------------------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 245 VNGTQLE----------------------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred cccceeh----------------------------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 6542211 344554 568899999999999999999999999987643
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=8.4e-11 Score=130.05 Aligned_cols=347 Identities=12% Similarity=0.104 Sum_probs=232.2
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCC-----------
Q 000961 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY----------- 73 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg----------- 73 (1208)
++...-++..++|||.|.+|++....| |.+|+...+..+.++. ...|..+.|||.+++|++-+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 444566788999999999999885544 9999988777666663 34589999999999999976533
Q ss_pred ----eEEEEECCCCeEEEEEccCCCC--EE-EEEEcCCCCEEEEEECCCcEEEEECCCCeEE----EEEecCCCCEEEEE
Q 000961 74 ----KIKVWNYKMHRCLFTLLGHLDY--IR-TVQFHHEYPWIVSASDDQTIRIWNWQSRTCI----SVLTGHNHYVMCAS 142 (1208)
Q Consensus 74 ----~I~vWd~~~~~~~~~l~~h~~~--I~-~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i----~~l~~h~~~V~~l~ 142 (1208)
.+.|||+.++..+..+.+...+ .. -+.|+-+..+.+-. ....+.|+++ ++... ..++ ...|....
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFs 180 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFS 180 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEE
Confidence 5999999999999999876665 55 68889888876654 3457999997 33221 1222 35678888
Q ss_pred EeeCC--CEEEE-----EECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 143 FHPKE--DLVVS-----ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 143 ~~p~~--~~l~s-----~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
|+|.+ ..|+. ...++++++|.+...+.... +..+ ...=..+-|++.
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t------------------------k~lf---k~~~~qLkW~~~ 233 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT------------------------KNLF---KVSGVQLKWQVL 233 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee------------------------eeeE---eecccEEEEecC
Confidence 88864 33333 34677888888864332210 0011 111134677777
Q ss_pred CCEEEEEe-----------CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCee
Q 000961 216 LPLIVSGA-----------DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS--EDKSIRVWDVTKRTG 282 (1208)
Q Consensus 216 g~~L~sgs-----------~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs--~dg~I~vwd~~~~~~ 282 (1208)
|++|++-. ....+.++++.... +.......++|...+|.|.++.+++.+ .+..+.++|++.. .
T Consensus 234 g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l 309 (561)
T COG5354 234 GKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L 309 (561)
T ss_pred CceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence 77665422 23457888887554 222235678999999999888776654 6788999998755 3
Q ss_pred EEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCC
Q 000961 283 VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGST 362 (1208)
Q Consensus 283 ~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 362 (1208)
. +......-..+.|+|.++++...+-+. ..+.+.+||..+..... -.+..
T Consensus 310 ~--~~~Pe~~rNT~~fsp~~r~il~agF~n-----------------------l~gni~i~~~~~rf~~~-~~~~~---- 359 (561)
T COG5354 310 R--FYFPEQKRNTIFFSPHERYILFAGFDN-----------------------LQGNIEIFDPAGRFKVA-GAFNG---- 359 (561)
T ss_pred E--EecCCcccccccccCcccEEEEecCCc-----------------------cccceEEeccCCceEEE-EEeec----
Confidence 2 233444446678899998877655333 25667778776533221 12221
Q ss_pred CCCcCCeEEEEcCCCCEEEEEEec----CCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCC
Q 000961 363 SLNQSPRTLSYSPTENAVLICSDV----DGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSS 433 (1208)
Q Consensus 363 ~~~~~i~~l~~spdg~~llv~~~~----~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~d 433 (1208)
. ..+-..|+||+.++.+...+ .|..+.||++.+.... ..+.+.|-|.+++..+.+..
T Consensus 360 ~---n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----------el~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 360 L---NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----------ELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred C---CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-----------hhhhccccCCcccceeeccC
Confidence 1 34556799999988876654 4678999998864321 34568888888888777643
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.3e-11 Score=147.05 Aligned_cols=222 Identities=11% Similarity=0.041 Sum_probs=150.9
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecC---CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEE-EECCCeEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDYKIKVW 78 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg~I~vW 78 (1208)
+.+..+...+.+.+|||||++|+..+.. ..|.+||+.+|+... +....+.+.+.+|+|||+.|+. .+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 3456778889999999999999887642 469999998886543 3334456778999999998874 5677776666
Q ss_pred E--CCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEC--CCCeEEEEEecCCCCEEEEEEeeCCCEEEEE
Q 000961 79 N--YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNW--QSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1208)
Q Consensus 79 d--~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg~I~iwd~--~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~ 153 (1208)
. ..++. ...+..+........|+|||++|+..+. +|...||.+ .+++.. .+..+........|+|+|++|+..
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEE
Confidence 5 44443 4556656666778899999998887664 456666654 454432 222233445568899999999887
Q ss_pred ECCC---eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC---c
Q 000961 154 SLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---Q 227 (1208)
Q Consensus 154 s~Dg---~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg---~ 227 (1208)
+.++ .|.+||+.+.+... +.. ........|+|+|+.|+.++.++ .
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~----------------------------lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~ 396 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTA----------------------------LTD-TTRDESPSFAPNGRYILYATQQGGRSV 396 (427)
T ss_pred EccCCcEEEEEEECCCCCeEE----------------------------ccC-CCCccCceECCCCCEEEEEEecCCCEE
Confidence 7654 69999987654321 111 12235679999999988877544 3
Q ss_pred EEEEECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
+.+.+..... ...+..+.+.+...+|+|-
T Consensus 397 l~~~~~~g~~---~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 397 LAAVSSDGRI---KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEECCCCc---eEEeecCCCCCCCCccCCC
Confidence 5555564332 4445556677788888874
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=6.4e-11 Score=131.67 Aligned_cols=322 Identities=13% Similarity=0.197 Sum_probs=205.1
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC-----------CCeEEEEECC
Q 000961 13 KGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-----------DYKIKVWNYK 81 (1208)
Q Consensus 13 ~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-----------Dg~I~vWd~~ 81 (1208)
+-+.|||.|.||++--.-| |.+|--.+-..+++| .|.+ |.-+.|||..+||+|-+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4688999999999885455 999987766777777 4655 899999999999999753 2579999999
Q ss_pred CCeEEEEEccCCC--C-EEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC--
Q 000961 82 MHRCLFTLLGHLD--Y-IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-- 156 (1208)
Q Consensus 82 ~~~~~~~l~~h~~--~-I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D-- 156 (1208)
+|.....+....+ . -.-..||.|++++|.-.. .+|.||+..+-.++..-.-.-..|....|+|.++.|+.=+..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 9998888765222 2 234689999999988766 579999977654443333345678889999998777643211
Q ss_pred ---CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe----------
Q 000961 157 ---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA---------- 223 (1208)
Q Consensus 157 ---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs---------- 223 (1208)
..+.+-.+.+.+... ...++...+ ..+-|-.+|.+|++--
T Consensus 370 ~~parvtL~evPs~~~iR-------------t~nlfnVsD--------------ckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIR-------------TKNLFNVSD--------------CKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred CCcceEEEEecCccceee-------------eccceeeec--------------cEEEeccCCcEEEEEEEeeccccccc
Confidence 122333332221110 001111111 2244555666655422
Q ss_pred CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCC-C---eeEEEeecCCCCEEEE
Q 000961 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE---DKSIRVWDVTK-R---TGVQTFRREHDRFWIL 296 (1208)
Q Consensus 224 ~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~---dg~I~vwd~~~-~---~~~~~~~~~~~~i~~l 296 (1208)
.-..+.|+.++.... ++... .....|...+|-|.|+.+++-+. ..++.+|.+.+ . +.+..+ .....+.+
T Consensus 423 ~f~n~eIfrireKdI-pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~--dk~~~N~v 498 (698)
T KOG2314|consen 423 QFSNLEIFRIREKDI-PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL--DKKFANTV 498 (698)
T ss_pred eEeeEEEEEeeccCC-Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--cccccceE
Confidence 122356666666543 12222 24567889999999998877553 34688888763 2 222222 23457789
Q ss_pred EEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCC
Q 000961 297 ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT 376 (1208)
Q Consensus 297 a~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 376 (1208)
.|+|.|++++++.-.+ ..+.+.++|..-.....+-.. .| . ..+.+.|.|.
T Consensus 499 fwsPkG~fvvva~l~s-----------------------~~g~l~F~D~~~a~~k~~~~~---eh-~---~at~veWDPt 548 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVS-----------------------RRGDLEFYDTDYADLKDTASP---EH-F---AATEVEWDPT 548 (698)
T ss_pred EEcCCCcEEEEEEecc-----------------------cccceEEEecchhhhhhccCc---cc-c---ccccceECCC
Confidence 9999999999876332 467788888774222211111 11 2 5677999999
Q ss_pred CCEEEEEEec----CCCEEEEEEccCC
Q 000961 377 ENAVLICSDV----DGGSYELYVIPKD 399 (1208)
Q Consensus 377 g~~llv~~~~----~~g~v~l~~l~~~ 399 (1208)
|++++.++.. .+.-++||++.+.
T Consensus 549 GRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 549 GRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCEEEEeeehhhhccccceEEEEeecH
Confidence 9999877653 2345666766643
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=9.1e-11 Score=130.46 Aligned_cols=351 Identities=14% Similarity=0.174 Sum_probs=218.8
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-----------CCeEEEEEC
Q 000961 96 IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-----------DQTVRVWDI 164 (1208)
Q Consensus 96 I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-----------Dg~V~vwdl 164 (1208)
-+-+.|||-|.+|+|-...| |.+|--.+-..++.+. |. .|.-+.|||..++|++=+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46689999999999987655 8899766655566654 54 4888999999999998652 267999999
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEee
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL 244 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l 244 (1208)
.++..+...+ .+.+....-.-..||.|+++++.-.. ..|.||+..+-.. +..-
T Consensus 290 ~tG~lkrsF~------------------------~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l--ld~K 342 (698)
T KOG2314|consen 290 ATGLLKRSFP------------------------VIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML--LDKK 342 (698)
T ss_pred cccchhccee------------------------ccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee--eccc
Confidence 9987654322 11111122234689999999988776 4588998776443 2222
Q ss_pred cCcCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeC
Q 000961 245 RGHMNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 245 ~~h~~~V~~l~~sp~g~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~ 319 (1208)
.-.-..|....|+|.+++||-=+.. ..+.+..+.+++.+.+...++-.=..+.|-.+|.+|++--+....
T Consensus 343 slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK----- 417 (698)
T KOG2314|consen 343 SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTK----- 417 (698)
T ss_pred ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecc-----
Confidence 2234568889999999888764432 246677777777776655444334457788888888765432110
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEec-CCCEEEEEEccC
Q 000961 320 RERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV-DGGSYELYVIPK 398 (1208)
Q Consensus 320 ~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~-~~g~v~l~~l~~ 398 (1208)
.. +-+.-..+.++.+... .+++..+.- ...+...+|-|.|..+++.++. ...++.+|.+..
T Consensus 418 -~~----------~~g~f~n~eIfrireK-dIpve~vel------ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 418 -SK----------VKGQFSNLEIFRIREK-DIPVEVVEL------KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred -cc----------ccceEeeEEEEEeecc-CCCceeeec------chheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 00 0001123455555542 223332221 2278889999999988877664 346788898874
Q ss_pred CC-CCCCcccccccCCceEEEEEEeCCcEEEEEc---CCCEEEEEecCCceeee--ecCCcceEEEEEeCCccEEEEe--
Q 000961 399 DS-IGRGDSVQDAKKGLGGSAIFIARNRFAVLDK---SSNQVLVKNLKNEVVKK--SILPIAADAIFYAGTGNLLCRA-- 470 (1208)
Q Consensus 399 ~~-~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~---~dg~I~Iwdl~~~~~~~--l~~~~~v~~i~~s~dg~~Las~-- 470 (1208)
.. ...++..++. ...+.+.|+|.|++++.+. ..|.+.++|.+....+. ...|...+.+.|.|.|++++++
T Consensus 480 ~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 480 NIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred CCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 32 2222222222 4567899999999987764 46778888888422222 2233367788888888888764
Q ss_pred ------CCeEEEEEcCCCeEEEEEeCCCeeEEEECCCC
Q 000961 471 ------EDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDM 502 (1208)
Q Consensus 471 ------dg~v~lwdl~~~~~l~~~~~~~v~~v~ws~dg 502 (1208)
|...++|+.+ |+++..-.........|-|--
T Consensus 558 ~wrhk~d~GYri~tfq-Grll~~~~i~~f~qF~WRPRP 594 (698)
T KOG2314|consen 558 SWRHKVDNGYRIFTFQ-GRLLKEDIIDRFKQFLWRPRP 594 (698)
T ss_pred hhhhccccceEEEEee-cHHHHHHHHHHHHhhccCCCC
Confidence 4555566552 333222222334445555443
No 248
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=2.6e-11 Score=130.11 Aligned_cols=263 Identities=13% Similarity=0.198 Sum_probs=191.1
Q ss_pred CCCCEEEEEEeCCCC--EEEEEecCCeEEEEECCCCeEEEE------ecccccCEEEEEEEcCCCEEEEEECCCeEEEEE
Q 000961 8 KSNRVKGLSFHSKRP--WILASLHSGVIQLWDYRMGTLIDR------FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 8 h~~~V~~lafspdg~--~Lasg~~dg~I~iWd~~~g~~i~~------l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1208)
...+|++++|.-+++ .+...+.+..+..+++........ .....++|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 356788888876554 444443566677777665544433 23455667666653 33788889999999999
Q ss_pred CCCCe----EEEEEccCCCCEEEEEEcCCCCEEE-EEECC--CcEEEEECCCCeEEEEEecC---------CCCEEEEEE
Q 000961 80 YKMHR----CLFTLLGHLDYIRTVQFHHEYPWIV-SASDD--QTIRIWNWQSRTCISVLTGH---------NHYVMCASF 143 (1208)
Q Consensus 80 ~~~~~----~~~~l~~h~~~I~~v~fs~d~~~l~-s~s~D--g~I~iwd~~s~~~i~~l~~h---------~~~V~~l~~ 143 (1208)
.+.+. .+..+..+ ..+..+.-++..+.|+ +|+.. ..+.|||+++.+.+..-+.- .-+++.+.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 88432 23333323 4566777777766555 47877 78999999988665544321 134678899
Q ss_pred eeC--CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEE
Q 000961 144 HPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS 221 (1208)
Q Consensus 144 ~p~--~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~s 221 (1208)
.|. ...|++++.-+.||+||.+..+... ..+.-...+++++...|+++.+++
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV--------------------------~~fd~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPV--------------------------AQFDFLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcce--------------------------eEeccccCcceeeeecCCCcEEEE
Confidence 887 7899999999999999998755432 234445788999999999999999
Q ss_pred EeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCC
Q 000961 222 GADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 222 gs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
|..-|.+..+|.+.++.. ...+.+..+.|+++..||.++++++++-|..+||+|+.+.+++...- -....+.+-+.++
T Consensus 265 gn~~g~l~~FD~r~~kl~-g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLL-GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred ecccchhheecccCceee-ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 999999999999999862 33478889999999999999999999999999999999877665432 2234455555443
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=2.8e-11 Score=127.27 Aligned_cols=257 Identities=18% Similarity=0.292 Sum_probs=175.8
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-e----EEEEecccc------------cCEEEEEEEcCCC--EEEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-T----LIDRFDEHD------------GPVRGVHFHKSQP--LFVSG 69 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g-~----~i~~l~~h~------------~~V~~l~fsp~~~--~Lasg 69 (1208)
.+-|.++.|...|.+||+|..+|.|.++.-... + ....++.|. ..|..+.|.++++ .+...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 456899999999999999999999999963221 1 233444443 4689999998766 67778
Q ss_pred ECCCeEEEEECCCCeEE-----------------------------------EEE-ccCCCCEEEEEEcCCCCEEEEEEC
Q 000961 70 GDDYKIKVWNYKMHRCL-----------------------------------FTL-LGHLDYIRTVQFHHEYPWIVSASD 113 (1208)
Q Consensus 70 s~Dg~I~vWd~~~~~~~-----------------------------------~~l-~~h~~~I~~v~fs~d~~~l~s~s~ 113 (1208)
+.|.+|++|.+...... +.+ .+|..-|.++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 88999999987532110 011 25778899999999999888864
Q ss_pred CCcEEEEECCC-CeEEE--EEecC-----CCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccc
Q 000961 114 DQTIRIWNWQS-RTCIS--VLTGH-----NHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (1208)
Q Consensus 114 Dg~I~iwd~~s-~~~i~--~l~~h-----~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~ 184 (1208)
|=.|.+|++.- .+... -++.+ ..-|++..|||.. +.++-.+..|+|++-|++....-..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~------------ 251 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA------------ 251 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc------------
Confidence 77899999863 22222 22323 2458899999976 7888888999999999984221100
Q ss_pred cccccc-cccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeecCcCC------------C
Q 000961 185 NTDLFG-GVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTLRGHMN------------N 250 (1208)
Q Consensus 185 ~~~~~~-~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~-~~~~~~~~l~~h~~------------~ 250 (1208)
...+|. ..+..-+..+.+--..|..+.|+++|+++++-. --+|++||++- .+. +.+.+-|.. .
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~p--v~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKP--VETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCc--ceEEeehHhHHHHHHHHhhccc
Confidence 001110 111112223334456788999999999998764 36799999843 333 444443321 1
Q ss_pred ---eEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 251 ---VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 251 ---V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
-..++|+.++.++++|+.....++++...|.
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2357899999999999999999999965443
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=4.4e-11 Score=133.49 Aligned_cols=279 Identities=12% Similarity=0.119 Sum_probs=197.2
Q ss_pred cCCCCEEEEEEeCCCCEEE-EEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeE
Q 000961 7 TKSNRVKGLSFHSKRPWIL-ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~La-sg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1208)
.|+..-+.|..+|||+|++ +|...-.|++||+.+-.+-..-.-....|.-.-.+.|-...+.-..|.+|-+-.- -|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 4667778999999999875 4556789999998765433222122344555555666556666666777765432 2221
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECC
Q 000961 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 86 ~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
. ++. -...-+.++++.-.--|++++....|+-+|+..|+.+..+....+.++++..++-..+|++|+.+|.|..||.+
T Consensus 128 y-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 128 Y-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred e-eee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 1 111 12334567777655557777777789999999999999998888999999999999999999999999999988
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-----RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~ 240 (1208)
.......... ......|. ..|+++.|+.+|-.+++|+.+|.|.|||++..+...
T Consensus 206 ~ksrv~~l~~---------------------~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 206 DKSRVGTLDA---------------------ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred hhhhheeeec---------------------ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 7543321110 00112233 349999999999999999999999999999988632
Q ss_pred EEeecCcCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCC
Q 000961 241 VDTLRGHMNNVSCVMFHAK--QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (1208)
Q Consensus 241 ~~~l~~h~~~V~~l~~sp~--g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~g 312 (1208)
..-.+..-+|..+.|.+. ++.+++.. ...++|||-.+|+....+.... .+..+++-|++.++.++.+++
T Consensus 265 -~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 265 -VKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred -ecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCC
Confidence 222334457888999775 44555543 4679999999999887776443 488899999888888776543
No 251
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.38 E-value=4.7e-08 Score=124.73 Aligned_cols=259 Identities=12% Similarity=0.153 Sum_probs=157.9
Q ss_pred cCEEEEEEEcCCCEEEE--EECCC--eEEEEECCCCe---EEEEEc-----cCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 000961 52 GPVRGVHFHKSQPLFVS--GGDDY--KIKVWNYKMHR---CLFTLL-----GHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (1208)
Q Consensus 52 ~~V~~l~fsp~~~~Las--gs~Dg--~I~vWd~~~~~---~~~~l~-----~h~~~I~~v~fs~d~~~l~s~s~Dg~I~i 119 (1208)
..+...+|.+....+.. +.... .|.+....... .+..+. ...+.|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35666777666553332 22222 23333332222 233332 24568999999999999999999999999
Q ss_pred E----ECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcccccc-------CCCcceeeccc--cc
Q 000961 120 W----NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVS-------PADDILRLSQM--NT 186 (1208)
Q Consensus 120 w----d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~-------~~~~~~~~~~~--~~ 186 (1208)
. +..+.. +.....-...|.+++|+||+..|+..+.++++.+.+- +....... .....++...+ ..
T Consensus 102 ~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 102 VREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccC
Confidence 9 544332 2233334578999999999999999999999887642 11111100 01112222111 11
Q ss_pred cccccccce---------E----EEEEeccCCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEeecCc
Q 000961 187 DLFGGVDAV---------V----KYVLEGHDRGVNWAAFHPTLPLIVSGAD------DRQVKLWRMNETKAWEVDTLRGH 247 (1208)
Q Consensus 187 ~~~~~~~~~---------~----~~~~~~h~~~V~~l~~sp~g~~L~sgs~------dg~I~iwd~~~~~~~~~~~l~~h 247 (1208)
+..|+.... . .-.+. ++..-..++|-.||.++++.+- -+.+++|+-. +.. ..+...-
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L--~stSE~v 255 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GEL--QSTSEPV 255 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceE--EeccccC
Confidence 211111110 0 01222 4556778999999999999874 2579999876 332 2222233
Q ss_pred CCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCeeEEEeec----CCCCEEEEEEeCCCCEEEEEECCCeeeEe
Q 000961 248 MNNVSCVMFHAKQDIIVSNSE---DKSIRVWDVTKRTGVQTFRR----EHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 248 ~~~V~~l~~sp~g~~l~sgs~---dg~I~vwd~~~~~~~~~~~~----~~~~i~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
.+--.+++|.|.|++||+... ...|.+|. ++|-.-..|.. ....+..+.|++++.+||+...+.+.+|.
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt 331 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWT 331 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEE
Confidence 344457899999999998765 34577787 34544444433 34578999999999999997765555554
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.37 E-value=2e-11 Score=128.52 Aligned_cols=209 Identities=21% Similarity=0.395 Sum_probs=167.9
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECC-CCeEEEEe-cccccCEEEEEEEcCCCEEEEEECCCeEEEE
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYR-MGTLIDRF-DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~-~g~~i~~l-~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1208)
++++++||.+.|+....-|..+-+++.+.|.+++||--+ .++.-..+ ..-..+++++.++++...|++|-+.|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 467899999999999999988889999999999999633 33332222 2346789999999999999999999999988
Q ss_pred ECC----CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC------------------------------
Q 000961 79 NYK----MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS------------------------------ 124 (1208)
Q Consensus 79 d~~----~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s------------------------------ 124 (1208)
.+. ....++....|...+..+.|+....++++.+.|..+.---.++
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 654 3345556677889999999988888888888775443211111
Q ss_pred -----------CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeecccccccccccc
Q 000961 125 -----------RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVD 193 (1208)
Q Consensus 125 -----------~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1208)
-..+.++.+|.+.+.++.|.|....+.+|..|..+.+||+...+.
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g------------------------ 231 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG------------------------ 231 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc------------------------
Confidence 134566778999999999999999999999999999999977443
Q ss_pred ceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000961 194 AVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 194 ~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~ 235 (1208)
..+.+.+|...|..+..-+--+.+++++.||.|.+|+++.
T Consensus 232 --~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 232 --TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred --eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 3457889999999999988888999999999999999874
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=5e-11 Score=124.92 Aligned_cols=150 Identities=15% Similarity=0.340 Sum_probs=114.9
Q ss_pred EEEEEeCCCCEEEEEec----------CCeEEEEECC-CCeEEEEec-ccccCEEEEEEEcCCCEEEEE--ECCCeEEEE
Q 000961 13 KGLSFHSKRPWILASLH----------SGVIQLWDYR-MGTLIDRFD-EHDGPVRGVHFHKSQPLFVSG--GDDYKIKVW 78 (1208)
Q Consensus 13 ~~lafspdg~~Lasg~~----------dg~I~iWd~~-~g~~i~~l~-~h~~~V~~l~fsp~~~~Lasg--s~Dg~I~vW 78 (1208)
..+.|+|+|.+|++-.. -|...||.++ .+..+..+. ...++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999998876644 1335555542 233344443 345689999999999987665 356799999
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC
Q 000961 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (1208)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D---g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~ 155 (1208)
|++ ++.+.++. ...+..+.|+|+|++|++++.+ |.|.+||.++.+.+.... | ..++.++|+|+|+++++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 66666664 5678899999999999998754 679999999888887765 3 34789999999999999874
Q ss_pred ------CCeEEEEECCCC
Q 000961 156 ------DQTVRVWDIGAL 167 (1208)
Q Consensus 156 ------Dg~V~vwdl~~~ 167 (1208)
|..++||+..+.
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 788999998763
No 254
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.35 E-value=7e-12 Score=138.86 Aligned_cols=137 Identities=17% Similarity=0.390 Sum_probs=115.3
Q ss_pred CCCEEEEEEeCCC-CEEEEEecCCeEEEEECCC--------------Ce--------------EEEEecccccCEEEEEE
Q 000961 9 SNRVKGLSFHSKR-PWILASLHSGVIQLWDYRM--------------GT--------------LIDRFDEHDGPVRGVHF 59 (1208)
Q Consensus 9 ~~~V~~lafspdg-~~Lasg~~dg~I~iWd~~~--------------g~--------------~i~~l~~h~~~V~~l~f 59 (1208)
..+|+|+.|-|.+ ..++++-.+|.+.++|... +. .+..+.--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4789999999944 4555666789999997421 11 11122223457889999
Q ss_pred EcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEE
Q 000961 60 HKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVM 139 (1208)
Q Consensus 60 sp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~ 139 (1208)
+|||++||+.+.||.++|+|+.+.+++..++.--+...|++|||||++|++|+.|.-|.||.+..++.+..-.+|.++|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 99999999999999999999999888888887788999999999999999999999999999999999999999999999
Q ss_pred EEEEee
Q 000961 140 CASFHP 145 (1208)
Q Consensus 140 ~l~~~p 145 (1208)
.++|.|
T Consensus 379 ~VaFDp 384 (636)
T KOG2394|consen 379 VVAFDP 384 (636)
T ss_pred eEeecc
Confidence 999983
No 255
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=5.4e-11 Score=127.67 Aligned_cols=220 Identities=14% Similarity=0.299 Sum_probs=165.9
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe----EEEEecccccCEEEEEEEcCCCEEE-EEECC--CeEEEEEC
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT----LIDRFDEHDGPVRGVHFHKSQPLFV-SGGDD--YKIKVWNY 80 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~----~i~~l~~h~~~V~~l~fsp~~~~La-sgs~D--g~I~vWd~ 80 (1208)
-+..|.+++.. ..+|+++..+|.+++|..+.+. .+..+..+ .++..+.-++..+.++ +||.. ..+.+||+
T Consensus 104 ~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 104 GTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence 34455555554 3467888899999999987443 22223223 4566777777766555 58887 78999999
Q ss_pred CCCeEEEEEccCC---------CCEEEEEEcCC--CCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCEEEEEEeeCCC
Q 000961 81 KMHRCLFTLLGHL---------DYIRTVQFHHE--YPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKED 148 (1208)
Q Consensus 81 ~~~~~~~~l~~h~---------~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s-~~~i~~l~~h~~~V~~l~~~p~~~ 148 (1208)
++.+.+++-..-. -.++++.|.+. ...|++++.-+.+++||.+. ++++..+.-...+++++...|+++
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn 260 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN 260 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc
Confidence 9887666543221 24678899888 77999999999999999984 567888888889999999999999
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcE
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 228 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I 228 (1208)
.|++|..-|.+..||+++.+... ..+.+-.+.|.++..+|+++++++++-|+.|
T Consensus 261 ~Iy~gn~~g~l~~FD~r~~kl~g--------------------------~~~kg~tGsirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 261 FIYTGNTKGQLAKFDLRGGKLLG--------------------------CGLKGITGSIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred EEEEecccchhheecccCceeec--------------------------cccCCccCCcceEEEcCCCceEEeeccceeE
Confidence 99999999999999998865432 2466778999999999999999999999999
Q ss_pred EEEECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 229 ~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
+|+|+.+.+. +.... -...++++.+.++
T Consensus 315 RIhD~ktrkl--l~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 315 RIHDIKTRKL--LHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred EEeecccchh--hhhhh-hhccccEEEecCC
Confidence 9999998664 22211 1234555655543
No 256
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.3e-10 Score=127.96 Aligned_cols=282 Identities=14% Similarity=0.165 Sum_probs=195.2
Q ss_pred ccccCEEEEEEEcCCCEE-EEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 000961 49 EHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~ 127 (1208)
+|...-+.|..+|||+|+ +||...-.|++||+.+-...+.-.-....|.-.-.+.|...++.-..|.+|-+..- .|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 467778999999999975 56778889999999876554444334456777777888877888888888877653 2322
Q ss_pred EEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCe
Q 000961 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1208)
Q Consensus 128 i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 207 (1208)
-.+- -...-..++++.-..-|++++....|.-+++..++... .+....+++
T Consensus 128 y~~R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~---------------------------P~~~~~~~l 178 (703)
T KOG2321|consen 128 YRTR--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN---------------------------PFETDSGEL 178 (703)
T ss_pred eeee--cCcCCccccccCCCccEEEeecCcceEEEEcccccccc---------------------------ccccccccc
Confidence 1111 11223455665444445555556778888888766543 344455889
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEee------cCcCC-----CeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000961 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL------RGHMN-----NVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 208 ~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l------~~h~~-----~V~~l~~sp~g~~l~sgs~dg~I~vwd 276 (1208)
+++..++...+|++|+.+|.|.+||.+.... +.++ ..|.+ .|+++.|+.+|-.+++|+.+|.+.|||
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhh--heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 9999999999999999999999999988765 2222 22333 499999999999999999999999999
Q ss_pred CCCCeeEEEeec-CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEe
Q 000961 277 VTKRTGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (1208)
Q Consensus 277 ~~~~~~~~~~~~-~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~ 355 (1208)
+++.+++..-.. ..-+|..+.|.+.+. ++.++++....+++||-.+|+......
T Consensus 257 LRa~~pl~~kdh~~e~pi~~l~~~~~~~-------------------------q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 257 LRASKPLLVKDHGYELPIKKLDWQDTDQ-------------------------QNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred cccCCceeecccCCccceeeecccccCC-------------------------CceEEecchHHhhhcccccCCceeecc
Confidence 999888765432 223566777765411 122333356678899999988754432
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
.. + .+..+++-|++.+++++. +++.+..|-++
T Consensus 312 pt-----~---~lND~C~~p~sGm~f~An--e~~~m~~yyiP 343 (703)
T KOG2321|consen 312 PT-----S---DLNDFCFVPGSGMFFTAN--ESSKMHTYYIP 343 (703)
T ss_pred cc-----C---CcCceeeecCCceEEEec--CCCcceeEEcc
Confidence 21 2 788899999988776643 34455555554
No 257
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.33 E-value=4.3e-11 Score=132.76 Aligned_cols=240 Identities=13% Similarity=0.138 Sum_probs=161.1
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE----EEEccCCCCEEEEEE-----cCCCCEEEEEECCCcEEEEECCC
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL----FTLLGHLDYIRTVQF-----HHEYPWIVSASDDQTIRIWNWQS 124 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~----~~l~~h~~~I~~v~f-----s~d~~~l~s~s~Dg~I~iwd~~s 124 (1208)
++...++-.|.+|+..-. ..+.+|++..+..+ ....-.....+|-.| .+++--++++-.-|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 444555556667766533 36889988743211 111111112233344 24455688888889999988765
Q ss_pred CeEEEEEe----cCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCcccccc-----CCCcceeeccccccccccccc
Q 000961 125 RTCISVLT----GHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVS-----PADDILRLSQMNTDLFGGVDA 194 (1208)
Q Consensus 125 ~~~i~~l~----~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 194 (1208)
.+....+. .....|+|+.|-|.+ ..++.+..+|.+.++|..-....... +....+.+... .+....
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~----ksk~~r 280 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTS----KSKKTR 280 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeee----eccccC
Confidence 22211111 124679999999965 67777888999999987332111100 01111111000 000010
Q ss_pred eEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000961 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 195 ~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~v 274 (1208)
.....+.--.+.|+..+|+|||++|++.+.||.++|+|..+.+. +..++...+...|++|||||++|++|++|--|.|
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL--lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL--LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH--HHHHHhhccceEEEEEcCCccEEEecCCcceEEE
Confidence 11122223345899999999999999999999999999998886 5666777889999999999999999999999999
Q ss_pred EeCCCCeeEEEeecCCCCEEEEEEeC
Q 000961 275 WDVTKRTGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 275 wd~~~~~~~~~~~~~~~~i~~la~sp 300 (1208)
|.+..++.+..-.+|...|..++|.|
T Consensus 359 wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 359 WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999997
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=7.4e-09 Score=119.76 Aligned_cols=266 Identities=13% Similarity=0.163 Sum_probs=171.4
Q ss_pred cCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--ceeEEEeecCcCCCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 000961 203 HDRGVNWAAFHPTLPLIVSGAD----DRQVKLWRMNET--KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVW 275 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~----dg~I~iwd~~~~--~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs-~dg~I~vw 275 (1208)
......+++++|++++|.+... ++.|..|++... +...+............++++|++++|+++. .+|+|.++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 3455678999999999999877 568999988764 4433444444556677899999999998876 58999999
Q ss_pred eCCC-CeeEEE---ee----------cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEE
Q 000961 276 DVTK-RTGVQT---FR----------REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLR 341 (1208)
Q Consensus 276 d~~~-~~~~~~---~~----------~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~ 341 (1208)
++.. +..... +. .......++.++|+++++.+..-+ ...|.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-------------------------~D~v~ 169 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-------------------------ADRVY 169 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-------------------------TTEEE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-------------------------CCEEE
Confidence 9986 433322 21 122457789999999988776532 34566
Q ss_pred EEEccCCc--ceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC-CCCcc---cc-cccC--
Q 000961 342 YYEFSTQK--DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI-GRGDS---VQ-DAKK-- 412 (1208)
Q Consensus 342 v~d~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~-~~~~~---~~-~~~~-- 412 (1208)
+|++.... ......+..... . .++.+.|+|+++++.+... .++.|.+|++..... ....+ .. ....
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G-~---GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPG-S---GPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTT-S---SEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred EEEEeCCCceEEEeeccccccC-C---CCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 77776644 322222222111 2 7899999999998877655 667999999883211 00100 11 1111
Q ss_pred CceEEEEEEeCCcEEEEE-cCCCEEEEEecC--Cceee---eecCCc-ceEEEEEeCCccEEEEe---CCeEEEEEc--C
Q 000961 413 GLGGSAIFIARNRFAVLD-KSSNQVLVKNLK--NEVVK---KSILPI-AADAIFYAGTGNLLCRA---EDRVVIFDL--Q 480 (1208)
Q Consensus 413 ~~i~~~~fs~d~~~l~~~-~~dg~I~Iwdl~--~~~~~---~l~~~~-~v~~i~~s~dg~~Las~---dg~v~lwdl--~ 480 (1208)
.....++++|||++|..+ ...++|.+|+++ +..+. .+.... ....+.++|+|++|+++ ++.|.+|++ .
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 257789999999886654 467889999994 23332 333322 58899999999999764 688999976 4
Q ss_pred CCeEEEEE---eCCCeeEEEE
Q 000961 481 QRLVLGDL---QTPFVKYVVW 498 (1208)
Q Consensus 481 ~~~~l~~~---~~~~v~~v~w 498 (1208)
+|.+...- ......+|.|
T Consensus 325 tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 325 TGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTEEEEEEEEEESSSEEEEEE
T ss_pred CCcEEEecccccCCCCEEEeC
Confidence 66654433 3355666665
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=3.3e-08 Score=114.38 Aligned_cols=264 Identities=14% Similarity=0.129 Sum_probs=174.4
Q ss_pred EEEEecC----CeEEEEEC--CCCeEE--EEecccccCEEEEEEEcCCCEEEEEEC----CCeEEEEECCCC--e--EEE
Q 000961 24 ILASLHS----GVIQLWDY--RMGTLI--DRFDEHDGPVRGVHFHKSQPLFVSGGD----DYKIKVWNYKMH--R--CLF 87 (1208)
Q Consensus 24 Lasg~~d----g~I~iWd~--~~g~~i--~~l~~h~~~V~~l~fsp~~~~Lasgs~----Dg~I~vWd~~~~--~--~~~ 87 (1208)
+++|+.. +.|.+|++ .++++. ... .-......++++|++++|.+... ++.|..|.+... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455554 68999987 555543 222 23444577999999999998876 579999988753 3 333
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEECCC-CeEEEE---Ee----------cCCCCEEEEEEeeCCCEEEE
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQS-RTCISV---LT----------GHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg~I~iwd~~s-~~~i~~---l~----------~h~~~V~~l~~~p~~~~l~s 152 (1208)
+..........++++|++++|+++.. +|+|.++++.. +..... +. .......++.|+|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 44434456678999999999999875 89999999986 443332 21 12345789999999998888
Q ss_pred EEC-CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 000961 153 ASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKL 230 (1208)
Q Consensus 153 ~s~-Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~i 230 (1208)
... ...|.+|++........ . ..........+-..++|+|+++++.+.. .++.|.+
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~---------------------~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLT---------------------P-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEE---------------------E-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EecCCCEEEEEEEeCCCceEE---------------------E-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 764 45799999876431100 0 0111223456678899999999886665 5778999
Q ss_pred EECC--CCceeEEEeecC----c--CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC--CC--eeEEEeecCCCCEEEEE
Q 000961 231 WRMN--ETKAWEVDTLRG----H--MNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVT--KR--TGVQTFRREHDRFWILA 297 (1208)
Q Consensus 231 wd~~--~~~~~~~~~l~~----h--~~~V~~l~~sp~g~~l~sgs-~dg~I~vwd~~--~~--~~~~~~~~~~~~i~~la 297 (1208)
+++. ++....+..... . ......+.++|||++|.++. ..++|.+|++. ++ +.+..+.......+.++
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence 9988 443322332221 1 22578899999999887765 45689999983 23 33444555555689999
Q ss_pred EeCCCCEEEEEEC
Q 000961 298 SHPEMNLLAAGHD 310 (1208)
Q Consensus 298 ~sp~~~~la~g~~ 310 (1208)
++|+|++|+++..
T Consensus 299 ~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 299 FSPDGRYLYVANQ 311 (345)
T ss_dssp E-TTSSEEEEEET
T ss_pred EeCCCCEEEEEec
Confidence 9999999998875
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=1.2e-09 Score=130.81 Aligned_cols=196 Identities=17% Similarity=0.233 Sum_probs=159.4
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCC----CEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD----YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~----~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i 128 (1208)
.|....+..+...++.++.+..+.+||...+.....+..... ...-+.++++.-++++|+.-+.|.+|++...+.-
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 344455666778899999999999999988777666553222 2333455677779999999999999999844433
Q ss_pred EEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 129 SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 129 ~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
..+.+|.+.+.++.|+-+|.++++.|.|.++|+|++.+.+... ...-+|...|.
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------------------------~~~fgHsaRvw 222 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------------------------CTGFGHSARVW 222 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------------cccccccceeE
Confidence 4688999999999999999999999999999999998865432 14568999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN-NVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 209 ~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~-~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
.++|+|+ .+++++.|.+.++|+.+... ...+.+|.. .+..++.+++...+++++.||.+++||+..
T Consensus 223 ~~~~~~n--~i~t~gedctcrvW~~~~~~---l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGEDCTCRVWGVNGTQ---LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEeccc--eeEEeccceEEEEEecccce---ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999998 89999999999999777665 346667754 689999999999999999999999999764
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=5.4e-10 Score=133.79 Aligned_cols=223 Identities=11% Similarity=0.042 Sum_probs=151.3
Q ss_pred CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC---CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCE
Q 000961 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPW 107 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~ 107 (1208)
..|.++|.. +...+.+..+...+...+|+|+|++|+.++.+ ..|++||+.+++... +..+...+.++.|+||++.
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 368888874 44445565677789999999999999887643 489999998876543 3345566778999999997
Q ss_pred EEEE-ECCC--cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC-C--eEEEEECCCCccccccCCCcceee
Q 000961 108 IVSA-SDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-Q--TVRVWDIGALRKKTVSPADDILRL 181 (1208)
Q Consensus 108 l~s~-s~Dg--~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D-g--~V~vwdl~~~~~~~~~~~~~~~~~ 181 (1208)
|+.. +.++ .|++||+.++... .+..+........|+|+++.|+..+.. + .|.++|+.+.+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----------- 315 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----------- 315 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 7644 4443 5889998877643 344455555678899999988776643 3 5777776553321
Q ss_pred ccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeecCcCCCeEEEEEcc
Q 000961 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg---~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp 258 (1208)
.+..+...+....|+|+|++++.++.++ .|.+||+.++.. ..+... .......|+|
T Consensus 316 -----------------~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~~~-~~~~~p~~sp 374 (417)
T TIGR02800 316 -----------------RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLTDT-GLDESPSFAP 374 (417)
T ss_pred -----------------EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEccCC-CCCCCceECC
Confidence 1222344566789999999999988776 788999887653 222222 2334568999
Q ss_pred CCCEEEEEeCCC---cEEEEeCCCCeeEEEeecC
Q 000961 259 KQDIIVSNSEDK---SIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 259 ~g~~l~sgs~dg---~I~vwd~~~~~~~~~~~~~ 289 (1208)
+|++|+..+.++ .+.+.+. ++.....+..+
T Consensus 375 dg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~ 407 (417)
T TIGR02800 375 NGRMILYATTRGGRGVLGLVST-DGRFRARLPLG 407 (417)
T ss_pred CCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCC
Confidence 999988877654 3555553 34444444433
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=8.7e-10 Score=132.22 Aligned_cols=234 Identities=9% Similarity=0.002 Sum_probs=154.8
Q ss_pred eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC---CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEE
Q 000961 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI 108 (1208)
Q Consensus 32 ~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l 108 (1208)
.|.++|...+. .+.+..+..++....|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||++|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 48888876444 45555677889999999999998876643 479999998876533 33334455678999999988
Q ss_pred EE-EECCC--cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-CC--eEEEEECCCCccccccCCCcceeec
Q 000961 109 VS-ASDDQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRLS 182 (1208)
Q Consensus 109 ~s-~s~Dg--~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-Dg--~V~vwdl~~~~~~~~~~~~~~~~~~ 182 (1208)
+. .+.+| .|.+||+.+++.. .+..+........|+|+|+.|+..+. +| .|.++++.+++...
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----------- 325 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----------- 325 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----------
Confidence 74 44454 6888899887654 45555556677899999988877664 33 46667765543211
Q ss_pred cccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-R--QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d-g--~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
....+ .......|+|+|+.|+..+.+ + .|.+||+.+++.. .+.. ........|+|+
T Consensus 326 ---------------lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~---~lt~-~~~~~~p~~spd 384 (430)
T PRK00178 326 ---------------VTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR---ILTD-TSLDESPSVAPN 384 (430)
T ss_pred ---------------eecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE---EccC-CCCCCCceECCC
Confidence 01111 122356899999999887653 3 5888998887642 2221 122235689999
Q ss_pred CCEEEEEeCC---CcEEEEeCCCCeeEEEeecCCCCEEEEEEeCC
Q 000961 260 QDIIVSNSED---KSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 260 g~~l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
|+.++..+.+ ..|.+++.. +.....+..+.+.+...+|+|-
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 9999877654 346777764 4444445444555666777763
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=7.8e-10 Score=132.13 Aligned_cols=233 Identities=9% Similarity=0.017 Sum_probs=151.0
Q ss_pred eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC---CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEE
Q 000961 32 VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI 108 (1208)
Q Consensus 32 ~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l 108 (1208)
.|.++|.... ..+.+..+..++.+..|||||+.|+..+.+ ..|.+||+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~-~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGY-NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCC-CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 6777786443 335555677889999999999988876542 368999998776432 22223334578999999988
Q ss_pred EE-EECCCc--EEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-CC--eEEEEECCCCccccccCCCcceeec
Q 000961 109 VS-ASDDQT--IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRLS 182 (1208)
Q Consensus 109 ~s-~s~Dg~--I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-Dg--~V~vwdl~~~~~~~~~~~~~~~~~~ 182 (1208)
+. .+.+|. |.+||+.+++.. .+..+........|+|+|+.|+..+. ++ .|.++|+.+++...
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----------- 344 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----------- 344 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----------
Confidence 75 455664 778898877653 44445556678899999998877654 34 45556665533211
Q ss_pred cccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD-DR--QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~-dg--~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
....+ ......+|+|+|++|+..+. ++ .|.++|+.+++. ..+.... ......|+|+
T Consensus 345 ---------------Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~~-~d~~ps~spd 403 (448)
T PRK04792 345 ---------------LTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM---QVLTSTR-LDESPSVAPN 403 (448)
T ss_pred ---------------EecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe---EEccCCC-CCCCceECCC
Confidence 11111 22234689999999887665 34 455677777763 2222221 2234589999
Q ss_pred CCEEEEEeCC-C--cEEEEeCCCCeeEEEeecCCCCEEEEEEeC
Q 000961 260 QDIIVSNSED-K--SIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 260 g~~l~sgs~d-g--~I~vwd~~~~~~~~~~~~~~~~i~~la~sp 300 (1208)
|+.|+..+.+ | .+.+++. ++.....+..+.+.+...+|+|
T Consensus 404 G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 404 GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 9988776644 3 3777776 4666666665556667777776
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.6e-09 Score=123.39 Aligned_cols=230 Identities=10% Similarity=0.091 Sum_probs=139.5
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCC-EEEEEEeCCCCEEEEE-ECCCeeeEeeCCCcceEEecCCEE
Q 000961 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR-FWILASHPEMNLLAAG-HDSGMIVFKLERERPAFAVSGDSL 332 (1208)
Q Consensus 255 ~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~-i~~la~sp~~~~la~g-~~~gi~v~~l~~~~~~~s~~~~~L 332 (1208)
+|++.+..++.|+.+|.|.+.+- +-+.++.++.+... +..+....+.++|++- -+.+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~------------------- 89 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG------------------- 89 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCC-------------------
Confidence 56788899999999999988873 34444666666655 4444333343555543 33220
Q ss_pred EEEeCCeEEEEEccCCcc------e---eeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC-C
Q 000961 333 FYAKDRFLRYYEFSTQKD------T---QVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI-G 402 (1208)
Q Consensus 333 ~~~~d~~i~v~d~~~~~~------~---~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~-~ 402 (1208)
+...+++|++...+. . .+.+.+.+.. ..++.+++.+.+-+.+++ |..+|.|..+.=+--.. +
T Consensus 90 ---np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~---~~p~s~l~Vs~~l~~Iv~--Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 90 ---NPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTN---PSPASSLAVSEDLKTIVC--GFTNGLVICYKGDILRDRG 161 (933)
T ss_pred ---CceEEEEecccccCCCCCcceeeeeeeeccCCCCC---CCcceEEEEEccccEEEE--EecCcEEEEEcCcchhccc
Confidence 011467777665211 1 1222222212 237888999988665544 55678888876321111 1
Q ss_pred CCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCce--eeeecCCc-ceEEEEEeCC-ccEEEEeCCeEEEEE
Q 000961 403 RGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEV--VKKSILPI-AADAIFYAGT-GNLLCRAEDRVVIFD 478 (1208)
Q Consensus 403 ~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~--~~~l~~~~-~v~~i~~s~d-g~~Las~dg~v~lwd 478 (1208)
..........++|+.+++-.+++.++.......|.+|.++++. .+.+..++ +..+-.+++. ++++++++..+.+||
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 1111123344589999999998762222225779999999665 45566666 7788888876 448888899999999
Q ss_pred cCCCeEEEEEeCCCeeEEEECCCCCEEEEEeCCe
Q 000961 479 LQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHA 512 (1208)
Q Consensus 479 l~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~ 512 (1208)
......-..+..+.-+.+.|..-|-.+++..+.+
T Consensus 242 sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~ 275 (933)
T KOG2114|consen 242 SDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKG 275 (933)
T ss_pred CCCcceeeeecCCCeEEEEEEecCEEEEEEccCC
Confidence 9876666666654555666655555555554443
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=8.2e-10 Score=132.43 Aligned_cols=222 Identities=10% Similarity=0.009 Sum_probs=149.6
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecC---CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEE-EECCC--eEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDY--KIK 76 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg--~I~ 76 (1208)
+.+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+....|+|+|+.|+. .+.+| .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3455677889999999999999876543 469999998886543 3334455667999999998874 44444 688
Q ss_pred EEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEE
Q 000961 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg--~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~ 153 (1208)
+||+.+++.. .+..+........|+||++.|+..+. +| .|.++|+.+++...... .........|+|+|+.|+..
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEE
Confidence 8999877643 45556666777899999998877664 33 57778887776543322 22334567899999998887
Q ss_pred ECC-C--eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC---Cc
Q 000961 154 SLD-Q--TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQ 227 (1208)
Q Consensus 154 s~D-g--~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d---g~ 227 (1208)
+.+ + .|.+||+.+++.... . +........|+|+|+.++..+.+ ..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~l----------------------------t-~~~~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRIL----------------------------T-DTSLDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred EccCCceEEEEEECCCCCEEEc----------------------------c-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence 653 3 478888876442211 1 11111245899999998877653 34
Q ss_pred EEEEECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
+.+++..... ...+..+.+.+...+|+|-
T Consensus 400 l~~~~~~g~~---~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 400 LMLVSINGRV---RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEECCCCc---eEECcCCCCCcCCCccCCC
Confidence 6677776544 3344445566777788763
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=3.8e-10 Score=118.94 Aligned_cols=188 Identities=14% Similarity=0.273 Sum_probs=123.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-Ce----EEEEEecCC------------CCEEEEEEeeCC--CEEEE
Q 000961 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RT----CISVLTGHN------------HYVMCASFHPKE--DLVVS 152 (1208)
Q Consensus 92 h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-~~----~i~~l~~h~------------~~V~~l~~~p~~--~~l~s 152 (1208)
..+-|.++.|...|.+|++|..+|.|.++.-.. .+ ....++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456789999999999999999999999996432 21 223344443 357788999876 56777
Q ss_pred EECCCeEEEEECCCCcccccc---CC-Ccceeeccccccccccccce-----EEEEEeccCCCeEEEEEcCCCCEEEEEe
Q 000961 153 ASLDQTVRVWDIGALRKKTVS---PA-DDILRLSQMNTDLFGGVDAV-----VKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~V~~l~~sp~g~~L~sgs 223 (1208)
.+.|.+|++|.+.....+... +. .....+......+.+..+.. .+..-..|..-|++++++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 888999999998764433210 00 00000111111111111211 1223456888899999999999888765
Q ss_pred CCCcEEEEECCCCc-eeEEEeecCcC-----CCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 000961 224 DDRQVKLWRMNETK-AWEVDTLRGHM-----NNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 224 ~dg~I~iwd~~~~~-~~~~~~l~~h~-----~~V~~l~~sp~-g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
|=.|.+|++.-.. ...+..+..+. .-|++..|||. .+.++-.++.|+|++-|++..
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 7789999986432 22233344433 35889999994 578888899999999999843
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=4.5e-08 Score=107.38 Aligned_cols=407 Identities=12% Similarity=0.150 Sum_probs=238.6
Q ss_pred cccCEEEEEEEcC--CC-EEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEE-------ECCCcEEE
Q 000961 50 HDGPVRGVHFHKS--QP-LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSA-------SDDQTIRI 119 (1208)
Q Consensus 50 h~~~V~~l~fsp~--~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~-------s~Dg~I~i 119 (1208)
|.-.....-..|| |. .+.++++| +..+++.+++.. .+..|.+.|..-.|+|+|++++.. .....+.+
T Consensus 35 h~~cM~n~~l~PDI~GD~IiFt~~Dd--lWe~slk~g~~~-ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~ 111 (668)
T COG4946 35 HEFCMKNYYLNPDIYGDRIIFTCCDD--LWEYSLKDGKPL-RITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYV 111 (668)
T ss_pred hhhhhhhhhcCCcccCcEEEEEechH--HHHhhhccCCee-EEecccceeccccCCCCCcEEEEEEEEecCCCccccEEE
Confidence 4433444445665 34 44455554 444455666654 455688999999999999988862 22356788
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEE----CCCCccccccCCCcceeeccccccccccccce
Q 000961 120 WNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD----IGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 120 wd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwd----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
.+.++|+..+..--....-.-+-|.|+|+.|++...-.-..-|. +......
T Consensus 112 v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~------------------------- 166 (668)
T COG4946 112 VPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIK------------------------- 166 (668)
T ss_pred EeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCce-------------------------
Confidence 88888876553322233334466999999888766433222221 1110000
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEE--------------eCCCcEEEEECCCCc-eeEEEeecCcCCCeEEEEEccCC
Q 000961 196 VKYVLEGHDRGVNWAAFHPTLPLIVSG--------------ADDRQVKLWRMNETK-AWEVDTLRGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp~g~~L~sg--------------s~dg~I~iwd~~~~~-~~~~~~l~~h~~~V~~l~~sp~g 260 (1208)
...-.-++.+.+.+- +| .++.| +..| ++|--..+. . ...+....+.|++-..-.+
T Consensus 167 ---~e~LnlGpathiv~~-dg-~ivigRntydLP~WK~YkGGtrG--klWis~d~g~t--FeK~vdl~~~vS~PmIV~~- 236 (668)
T COG4946 167 ---TEPLNLGPATHIVIK-DG-IIVIGRNTYDLPHWKGYKGGTRG--KLWISSDGGKT--FEKFVDLDGNVSSPMIVGE- 236 (668)
T ss_pred ---eeeccCCceeeEEEe-CC-EEEEccCcccCcccccccCCccc--eEEEEecCCcc--eeeeeecCCCcCCceEEcc-
Confidence 000011222222221 22 22222 1222 233222211 1 2222223334444333222
Q ss_pred CEEEEEeCCCcEEEE--eCCCCeeEEEeecCCC--CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcc-------------
Q 000961 261 DIIVSNSEDKSIRVW--DVTKRTGVQTFRREHD--RFWILASHPEMNLLAAGHDSGMIVFKLERERP------------- 323 (1208)
Q Consensus 261 ~~l~sgs~dg~I~vw--d~~~~~~~~~~~~~~~--~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~------------- 323 (1208)
+.......+|.=.+| |+. |+-+ +.|.+ ...+-..+.||+.++....+.+.+|+.++++.
T Consensus 237 RvYFlsD~eG~GnlYSvdld-GkDl---rrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~ 312 (668)
T COG4946 237 RVYFLSDHEGVGNLYSVDLD-GKDL---RRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKK 312 (668)
T ss_pred eEEEEecccCccceEEeccC-Cchh---hhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCcccccc
Confidence 222333444443344 332 2222 22221 22334456688888877777777776554321
Q ss_pred -------------eEE-ecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCC
Q 000961 324 -------------AFA-VSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGG 389 (1208)
Q Consensus 324 -------------~~s-~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g 389 (1208)
-++ .+|+.++.++.|+..+.+...+-.+++ .. ...|+-..+..+++.+++... ++.
T Consensus 313 k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~------~~~VrY~r~~~~~e~~vigt~-dgD 382 (668)
T COG4946 313 KQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV---GK------KGGVRYRRIQVDPEGDVIGTN-DGD 382 (668)
T ss_pred ccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEc---CC------CCceEEEEEccCCcceEEecc-CCc
Confidence 122 367788888888888888776654432 22 225666677777775555443 444
Q ss_pred EEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeeeecCCc--ceEEEEEeCCccEE
Q 000961 390 SYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI--AADAIFYAGTGNLL 467 (1208)
Q Consensus 390 ~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~--~v~~i~~s~dg~~L 467 (1208)
.+.+|+..+.... .....-+.|.++..+++|++++.+.....|.+.|+++...+.+.... -|+.+.|+|+++++
T Consensus 383 ~l~iyd~~~~e~k----r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 383 KLGIYDKDGGEVK----RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred eEEEEecCCceEE----EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeE
Confidence 8999998864321 45567788999999999999999987788888899977777776554 79999999999999
Q ss_pred EEe------CCeEEEEEcCCCeEEEEEeC-CCeeEEEECCCCCEEEEEeCCe
Q 000961 468 CRA------EDRVVIFDLQQRLVLGDLQT-PFVKYVVWSNDMESVALLSKHA 512 (1208)
Q Consensus 468 as~------dg~v~lwdl~~~~~l~~~~~-~~v~~v~ws~dg~~la~~s~~~ 512 (1208)
+.+ ...|++||+.+++....-.. ..--+-+|.||+++|...+...
T Consensus 459 AYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred EEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 875 47899999998877655443 2334568999999998887643
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.26 E-value=7.6e-10 Score=132.50 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=141.3
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecC---CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEE-ECC--CeEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDD--YKIK 76 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~D--g~I~ 76 (1208)
+.+..+...+.+.+|||||++|+.+... ..|.+||+.+++... +..+.+.+.+++|+|+++.|+.. +.+ ..|.
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 3455667779999999999999987643 479999998886543 33456677889999999977654 433 4689
Q ss_pred EEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEE
Q 000961 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-Q--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D-g--~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~ 153 (1208)
+||+.++.. ..+..+........|+||+++|+.++.. + .|.++|+.+++.. .+..+...+....|+|++++++.+
T Consensus 262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEE
Confidence 999887654 3444455556678999999988876653 3 5888888776643 444455677888999999999998
Q ss_pred ECCC---eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC---c
Q 000961 154 SLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR---Q 227 (1208)
Q Consensus 154 s~Dg---~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg---~ 227 (1208)
+.++ .|.+||+.+..... +... .......|+|+|+.|+..+.++ .
T Consensus 340 ~~~~~~~~i~~~d~~~~~~~~----------------------------l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGGERV----------------------------LTDT-GLDESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred EccCCceEEEEEeCCCCCeEE----------------------------ccCC-CCCCCceECCCCCEEEEEEeCCCcEE
Confidence 8776 78888887632211 1111 1223458999999888877654 3
Q ss_pred EEEEECCC
Q 000961 228 VKLWRMNE 235 (1208)
Q Consensus 228 I~iwd~~~ 235 (1208)
+.+.+...
T Consensus 391 l~~~~~~g 398 (417)
T TIGR02800 391 LGLVSTDG 398 (417)
T ss_pred EEEEECCC
Confidence 45555443
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=4.1e-08 Score=110.58 Aligned_cols=281 Identities=12% Similarity=0.068 Sum_probs=180.1
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC----------CCeEEEEECCCCe
Q 000961 20 KRPWILASLHS-----GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD----------DYKIKVWNYKMHR 84 (1208)
Q Consensus 20 dg~~Lasg~~d-----g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~----------Dg~I~vWd~~~~~ 84 (1208)
+++++.+.... ++|.+.|..+++.+.++..-..+- .+ +|||++.|.++.. +..|.|||..+.+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 55666665443 899999999999999887544443 34 9999998777654 7899999999999
Q ss_pred EEEEEccCC-------CCEEEEEEcCCCCEEEEEE-C-CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC
Q 000961 85 CLFTLLGHL-------DYIRTVQFHHEYPWIVSAS-D-DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (1208)
Q Consensus 85 ~~~~l~~h~-------~~I~~v~fs~d~~~l~s~s-~-Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~ 155 (1208)
.+..+.... .....++++|||+++++.. . +..|.+.|+.+++.+..+.... ...-...+++.. . +-+.
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~ 165 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCR 165 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEee
Confidence 998886422 2334789999999999876 3 6899999999999998887422 122222222222 2 2234
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMN 234 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~ 234 (1208)
||......+......... +..+|...+. .+ ...+ .|.+ +|.++.+... |.|.+.|+.
T Consensus 166 Dg~~~~v~~d~~g~~~~~-----------~~~vf~~~~~----~v--~~rP----~~~~~dg~~~~vs~e-G~V~~id~~ 223 (352)
T TIGR02658 166 DGSLAKVGYGTKGNPKIK-----------PTEVFHPEDE----YL--INHP----AYSNKSGRLVWPTYT-GKIFQIDLS 223 (352)
T ss_pred cCceEEEEecCCCceEEe-----------eeeeecCCcc----cc--ccCC----ceEcCCCcEEEEecC-CeEEEEecC
Confidence 555544443321110000 0000000000 00 0122 4455 7777777666 999999965
Q ss_pred CCce-----eEEEeec-----CcCCCeEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCeeEEEeecCCCCEE
Q 000961 235 ETKA-----WEVDTLR-----GHMNNVSCVMFHAKQDIIVSNS----------EDKSIRVWDVTKRTGVQTFRREHDRFW 294 (1208)
Q Consensus 235 ~~~~-----~~~~~l~-----~h~~~V~~l~~sp~g~~l~sgs----------~dg~I~vwd~~~~~~~~~~~~~~~~i~ 294 (1208)
.... +...... -..+.+.-++++|+++.+.+.. ..+.|.++|..+++.+..+.. ..+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~ 302 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEID 302 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCcee
Confidence 5432 2221111 1233444599999999888743 124799999999999988875 45789
Q ss_pred EEEEeCCCC-EEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 295 ILASHPEMN-LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 295 ~la~sp~~~-~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
.++++||++ ++.+... .++.|.++|..+++.+..
T Consensus 303 ~iavS~Dgkp~lyvtn~-------------------------~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 303 SINVSQDAKPLLYALST-------------------------GDKTLYIFDAETGKELSS 337 (352)
T ss_pred eEEECCCCCeEEEEeCC-------------------------CCCcEEEEECcCCeEEee
Confidence 999999999 6655442 256678888888766443
No 270
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.23 E-value=7.6e-10 Score=116.03 Aligned_cols=151 Identities=11% Similarity=0.151 Sum_probs=108.0
Q ss_pred EEEEEEcCCCEEEEEEC----------CCeEEEEECCC-CeEEEEEcc-CCCCEEEEEEcCCCCEEEEE--ECCCcEEEE
Q 000961 55 RGVHFHKSQPLFVSGGD----------DYKIKVWNYKM-HRCLFTLLG-HLDYIRTVQFHHEYPWIVSA--SDDQTIRIW 120 (1208)
Q Consensus 55 ~~l~fsp~~~~Lasgs~----------Dg~I~vWd~~~-~~~~~~l~~-h~~~I~~v~fs~d~~~l~s~--s~Dg~I~iw 120 (1208)
..+.|+|+|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+++.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999987765433 12345555522 233444432 34579999999999987655 356799999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC---CCeEEEEECCCCccccccCCCcceeeccccccccccccceEE
Q 000961 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL---DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1208)
Q Consensus 121 d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1208)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++.+..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i--------------------------- 138 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI--------------------------- 138 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe---------------------------
Confidence 996 66666654 567889999999999999874 467999999864332
Q ss_pred EEEeccCCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCc
Q 000961 198 YVLEGHDRGVNWAAFHPTLPLIVSGAD------DRQVKLWRMNETK 237 (1208)
Q Consensus 198 ~~~~~h~~~V~~l~~sp~g~~L~sgs~------dg~I~iwd~~~~~ 237 (1208)
...+...++.++|+|+|++|++++. |+.++||+.....
T Consensus 139 --~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 139 --STFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred --eccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 1223345789999999999999874 6788999986554
No 271
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=4.3e-09 Score=124.73 Aligned_cols=239 Identities=12% Similarity=0.026 Sum_probs=151.7
Q ss_pred CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEE---EEECC--CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCC
Q 000961 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV---SGGDD--YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY 105 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~La---sgs~D--g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~ 105 (1208)
+.|.+.|...+ ..+.+..+...+..-.|||||+.++ +...+ ..|.+.++.+++... +....+......|||||
T Consensus 165 ~~l~~~d~dG~-~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQ-NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCC-CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 46888886544 3445655666778889999997522 33333 468888888765432 33344455678999999
Q ss_pred CEEEEEEC-CC----cEEEEECCC---CeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEEC--CCCccccccC
Q 000961 106 PWIVSASD-DQ----TIRIWNWQS---RTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDI--GALRKKTVSP 174 (1208)
Q Consensus 106 ~~l~s~s~-Dg----~I~iwd~~s---~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl--~~~~~~~~~~ 174 (1208)
++|+..+. +| .+.+|++.+ ++.......+........|+|||+.|+..+ .+|...+|.+ .....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~----- 317 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ----- 317 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-----
Confidence 98887653 22 344477664 233333333334456789999999887766 4665555543 21100
Q ss_pred CCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeecCcCCCe
Q 000961 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNV 251 (1208)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d---g~I~iwd~~~~~~~~~~~l~~h~~~V 251 (1208)
....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++. ..+......+
T Consensus 318 ---------------------~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~ 373 (428)
T PRK01029 318 ---------------------SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENK 373 (428)
T ss_pred ---------------------ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCc
Confidence 011233344566788999999998877643 4699999998874 3333334456
Q ss_pred EEEEEccCCCEEEEEeC---CCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCC
Q 000961 252 SCVMFHAKQDIIVSNSE---DKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 252 ~~l~~sp~g~~l~sgs~---dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
....|+|||+.|+..+. ...|.++|+.+++..... ...+.+...+|+|-
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 78999999998876543 346888998877654433 34445566777764
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=3.6e-08 Score=106.27 Aligned_cols=287 Identities=10% Similarity=0.110 Sum_probs=176.8
Q ss_pred CCcEEEEECCCCce-eEEEeecCcCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCC--CeeE--EEeecCCCCEEEE
Q 000961 225 DRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQDIIVSNSED---KSIRVWDVTK--RTGV--QTFRREHDRFWIL 296 (1208)
Q Consensus 225 dg~I~iwd~~~~~~-~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d---g~I~vwd~~~--~~~~--~~~~~~~~~i~~l 296 (1208)
+.-|++|++.+... .....+..+..+++-++|+|++++|.++-.+ |.|..|.+.. |+.. ........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56699999874321 1233444567889999999999999887654 6677776654 4432 2223334445788
Q ss_pred EEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccC-CcceeeEee-cCCCCCCC----CcCCeE
Q 000961 297 ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST-QKDTQVIPI-RRPGSTSL----NQSPRT 370 (1208)
Q Consensus 297 a~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~-~~~~~~~~~-~~~~~~~~----~~~i~~ 370 (1208)
+++++++++.++.- ..+.|.++-+.. |........ ...+..++ ...+..
T Consensus 95 svd~~g~~vf~AnY-------------------------~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 95 SVDEDGRFVFVANY-------------------------HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred EECCCCCEEEEEEc-------------------------cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 99999988887743 123344444433 222111111 11010000 013677
Q ss_pred EEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEc-CCCEEEEEecCC--ceee
Q 000961 371 LSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDK-SSNQVLVKNLKN--EVVK 447 (1208)
Q Consensus 371 l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~-~dg~I~Iwdl~~--~~~~ 447 (1208)
..+.|++++++++.-..| .+.+|++............-......+.++|+|+++++.... -+++|.+|..++ ....
T Consensus 150 a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 899999999988876555 788999985543322211122333567899999999876654 478999999984 3444
Q ss_pred eecC----------CcceEEEEEeCCccEEEEe---CCeEEEEEcCCC-eEEEEEeC-----CCeeEEEECCCCCEEEEE
Q 000961 448 KSIL----------PIAADAIFYAGTGNLLCRA---EDRVVIFDLQQR-LVLGDLQT-----PFVKYVVWSNDMESVALL 508 (1208)
Q Consensus 448 ~l~~----------~~~v~~i~~s~dg~~Las~---dg~v~lwdl~~~-~~l~~~~~-----~~v~~v~ws~dg~~la~~ 508 (1208)
.++. ......|.+++||++|..+ ...|.+|.+... ..+..... ...+...++++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 4332 2267889999999999664 468999987643 22322222 336889999999999998
Q ss_pred eCCe--EEEEec--CccceeeeecceeeeeeEE
Q 000961 509 SKHA--IIIASK--KLVHQCTLHETIRVKSGAW 537 (1208)
Q Consensus 509 s~~~--i~i~~~--~~~~~~~~~e~~~iks~~w 537 (1208)
..++ +.++.+ ....+..+.....+....|
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvc 341 (346)
T COG2706 309 NQKSDNITVFERDKETGRLTLLGRYAVVPEPVC 341 (346)
T ss_pred ccCCCcEEEEEEcCCCceEEecccccCCCCcEE
Confidence 8754 666544 4444444443333333333
No 273
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2.7e-09 Score=126.43 Aligned_cols=224 Identities=14% Similarity=0.083 Sum_probs=143.6
Q ss_pred eecCCCCEEEEEEeCCCCEEE---EEecCC--eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC-----CCe
Q 000961 5 FETKSNRVKGLSFHSKRPWIL---ASLHSG--VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-----DYK 74 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg~~La---sg~~dg--~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-----Dg~ 74 (1208)
|..+...+.+-+|||||+.++ ++..+| .|.+.++.+|+... +....+.....+|||||+.|+..+. +..
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 444455667789999998533 444443 57777887775433 3334455567899999998887653 223
Q ss_pred EEEEECCCC---eEEEEEccCCCCEEEEEEcCCCCEEEEEE-CCCcEEEE--ECCC-CeEEEEEecCCCCEEEEEEeeCC
Q 000961 75 IKVWNYKMH---RCLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIW--NWQS-RTCISVLTGHNHYVMCASFHPKE 147 (1208)
Q Consensus 75 I~vWd~~~~---~~~~~l~~h~~~I~~v~fs~d~~~l~s~s-~Dg~I~iw--d~~s-~~~i~~l~~h~~~V~~l~~~p~~ 147 (1208)
+.+|++.++ +......++........|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+|+|
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 445777652 32222223334456789999999888766 45655555 4432 33345555555677889999999
Q ss_pred CEEEEEECC---CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 148 DLVVSASLD---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 148 ~~l~s~s~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
+.|+..+.+ ..|.+||+.+++... +......+....|+|+|+.|+..+.
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~----------------------------Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ----------------------------LTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE----------------------------ccCCCCCccceEECCCCCEEEEEEC
Confidence 988877643 468999987754321 1122334567899999998876543
Q ss_pred ---CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC
Q 000961 225 ---DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 225 ---dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g 260 (1208)
...|.++++.+++. ..+....+.+...+|+|..
T Consensus 391 ~~g~~~L~~vdl~~g~~---~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKT---RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCE---EEeecCCCcccCceecCCC
Confidence 35688889988774 2333344556778888754
No 274
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2e-09 Score=128.55 Aligned_cols=219 Identities=10% Similarity=0.016 Sum_probs=141.8
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecC---CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEE-EECCC--eEEEEE
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDY--KIKVWN 79 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg--~I~vWd 79 (1208)
..+...+.+..|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|+|+.|+. .+.+| .|.+||
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 3445567889999999999876542 368899998876432 2222334457899999998775 45556 488888
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC
Q 000961 80 YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQ--TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD 156 (1208)
Q Consensus 80 ~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg--~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D 156 (1208)
+.+++. ..+..+........|+||+++|+..+. ++ .|.++|+.+++.... ..+........|+|+|++|+..+.+
T Consensus 293 l~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 293 IATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEec
Confidence 887654 445556666788999999998877664 33 566778877765433 2223334557899999988876653
Q ss_pred -C--eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--cEEE
Q 000961 157 -Q--TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-R--QVKL 230 (1208)
Q Consensus 157 -g--~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d-g--~I~i 230 (1208)
+ .|.++|+.+..... +... .......|+|+|+.|+..+.+ | .+.+
T Consensus 371 ~g~~~I~~~dl~~g~~~~----------------------------lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~ 421 (448)
T PRK04792 371 NGKFNIARQDLETGAMQV----------------------------LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAA 421 (448)
T ss_pred CCceEEEEEECCCCCeEE----------------------------ccCC-CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 4 35556766543211 1111 011234799999988776643 3 3667
Q ss_pred EECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 231 wd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
++..... ...+..+.+.+...+|+|-
T Consensus 422 ~~~~G~~---~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 422 VSIDGRF---KARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EECCCCc---eEECcCCCCCcCCCccCCC
Confidence 7775443 4445555667778888873
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1e-07 Score=102.81 Aligned_cols=274 Identities=14% Similarity=0.153 Sum_probs=174.9
Q ss_pred CCeEEEEECCCCe--E-EEEEccCCCCEEEEEEcCCCCEEEEEECC---CcEEEEECCC--CeEE--EEEecCCCCEEEE
Q 000961 72 DYKIKVWNYKMHR--C-LFTLLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNWQS--RTCI--SVLTGHNHYVMCA 141 (1208)
Q Consensus 72 Dg~I~vWd~~~~~--~-~~~l~~h~~~I~~v~fs~d~~~l~s~s~D---g~I~iwd~~s--~~~i--~~l~~h~~~V~~l 141 (1208)
+.-|.+|++.+.. . ...+-.+.+.++-++|+|+++.|.++..+ |.|-.|.+.. |+.. ........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4679999987422 1 12223467788999999999999888654 6777776664 5432 2222233444889
Q ss_pred EEeeCCCEEEEEE-CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC----------CeEEE
Q 000961 142 SFHPKEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR----------GVNWA 210 (1208)
Q Consensus 142 ~~~p~~~~l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------~V~~l 210 (1208)
++++++++++++. ..|.|.++-+...-..... .....|.+ .+...
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~------------------------v~~~~h~g~~p~~rQ~~~h~H~a 150 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV------------------------VQVVKHTGSGPHERQESPHVHSA 150 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccc------------------------eeeeecCCCCCCccccCCcccee
Confidence 9999999998886 4688999988652111100 01111222 27788
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEeec-CcCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCC----eeE
Q 000961 211 AFHPTLPLIVSGAD-DRQVKLWRMNETKAWEVDTLR-GHMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKR----TGV 283 (1208)
Q Consensus 211 ~~sp~g~~L~sgs~-dg~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~~sp~g~~l~sgs~-dg~I~vwd~~~~----~~~ 283 (1208)
.+.|++++|++.+- .-.|.+|++.+++........ ......+.|.|||++++..+..+ +++|.+|..... +.+
T Consensus 151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred eeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 99999999888762 345899999987753222211 33456789999999998877665 789999998763 223
Q ss_pred EEeec------CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccC--CcceeeEe
Q 000961 284 QTFRR------EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST--QKDTQVIP 355 (1208)
Q Consensus 284 ~~~~~------~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~--~~~~~~~~ 355 (1208)
+++.. .......|..+|+|++|.++... ...|.+|.+.. ++......
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg-------------------------~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG-------------------------HDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCC-------------------------CCeEEEEEEcCCCCEEEEEEE
Confidence 33221 12345678888999988876432 12333333332 22212222
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCC
Q 000961 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1208)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~ 400 (1208)
....+. .++.+.++|+|++|+++.. ++..+.+|..+...
T Consensus 286 ~~teg~-----~PR~F~i~~~g~~Liaa~q-~sd~i~vf~~d~~T 324 (346)
T COG2706 286 TPTEGQ-----FPRDFNINPSGRFLIAANQ-KSDNITVFERDKET 324 (346)
T ss_pred eccCCc-----CCccceeCCCCCEEEEEcc-CCCcEEEEEEcCCC
Confidence 222222 6899999999998877766 55579999987653
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.10 E-value=5.4e-07 Score=101.62 Aligned_cols=240 Identities=11% Similarity=0.065 Sum_probs=148.3
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEECCCCceeEEEeecCc-------CCCeEEEEEccCCCEEEEEe-C-CCcE
Q 000961 212 FHPTLPLIVSGAD----------DRQVKLWRMNETKAWEVDTLRGH-------MNNVSCVMFHAKQDIIVSNS-E-DKSI 272 (1208)
Q Consensus 212 ~sp~g~~L~sgs~----------dg~I~iwd~~~~~~~~~~~l~~h-------~~~V~~l~~sp~g~~l~sgs-~-dg~I 272 (1208)
++||++.|+++.. +..|.+||..+.+. +..+... ......++++|||+++++.. . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 9999998877765 78899999999987 4444321 22344789999999988765 3 6899
Q ss_pred EEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEE--eCCeEEEEEccCCcc
Q 000961 273 RVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA--KDRFLRYYEFSTQKD 350 (1208)
Q Consensus 273 ~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~--~d~~i~v~d~~~~~~ 350 (1208)
.+.|+.+++.+..+... ++..+...++.+.. ..+.+|..+.+. .+|+...-..
T Consensus 131 ~VvD~~~~kvv~ei~vp-----------~~~~vy~t~e~~~~---------~~~~Dg~~~~v~~d~~g~~~~~~~----- 185 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVP-----------DCYHIFPTANDTFF---------MHCRDGSLAKVGYGTKGNPKIKPT----- 185 (352)
T ss_pred EEEECCCCcEEEEEeCC-----------CCcEEEEecCCccE---------EEeecCceEEEEecCCCceEEeee-----
Confidence 99999999999887752 32222222211111 111222322222 2333221110
Q ss_pred eeeEeecCCCCCCCCcCCeEEEEcC-CCCEEEEEEecCCCEEEEEEccCCCCCCCc--cc--cc----c-cCCceEEEEE
Q 000961 351 TQVIPIRRPGSTSLNQSPRTLSYSP-TENAVLICSDVDGGSYELYVIPKDSIGRGD--SV--QD----A-KKGLGGSAIF 420 (1208)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~llv~~~~~~g~v~l~~l~~~~~~~~~--~~--~~----~-~~~~i~~~~f 420 (1208)
+++..... .+...+ .|++ +|+++.++.. |.+.+.++......... .. .. + ..+...-+++
T Consensus 186 -~vf~~~~~---~v~~rP---~~~~~dg~~~~vs~e---G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 186 -EVFHPEDE---YLINHP---AYSNKSGRLVWPTYT---GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred -eeecCCcc---ccccCC---ceEcCCCcEEEEecC---CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 01000000 000022 4455 8887776655 88888886544321111 00 00 1 1223334899
Q ss_pred EeCCcEEEEEc----------CCCEEEEEecC-CceeeeecCCcceEEEEEeCCcc-EEEEe---CCeEEEEEcCCCeEE
Q 000961 421 IARNRFAVLDK----------SSNQVLVKNLK-NEVVKKSILPIAADAIFYAGTGN-LLCRA---EDRVVIFDLQQRLVL 485 (1208)
Q Consensus 421 s~d~~~l~~~~----------~dg~I~Iwdl~-~~~~~~l~~~~~v~~i~~s~dg~-~Las~---dg~v~lwdl~~~~~l 485 (1208)
+++++.+.... ..+.|.++|.. .+.+..+.....+..|.++|||+ +|.+. ++.|.++|..+++.+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 99987666531 23579999998 66777887777999999999999 77553 588999999999999
Q ss_pred EEE
Q 000961 486 GDL 488 (1208)
Q Consensus 486 ~~~ 488 (1208)
..+
T Consensus 336 ~~i 338 (352)
T TIGR02658 336 SSV 338 (352)
T ss_pred eee
Confidence 998
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.10 E-value=1e-08 Score=108.46 Aligned_cols=251 Identities=17% Similarity=0.306 Sum_probs=180.6
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC-CCeEEEEE-ccCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK-MHRCLFTL-LGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~-~~~~~~~l-~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~i 119 (1208)
.+++.+++|...|+....-|..+-+++.+.|.+++||--. +++.-..+ .....+++++.++++...|+++-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 4566778999999999999988999999999999999533 33332222 224568999999999999999999999988
Q ss_pred EECC----CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 120 WNWQ----SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 120 wd~~----s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
+.+. ....++....|...|..+.|+-....+++.+.|..+.---.+.+....
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg------------------------ 150 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG------------------------ 150 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc------------------------
Confidence 8654 445566677899999999999888999999988776443333221110
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000961 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vw 275 (1208)
.+.+..... .+.+.- .+...|...|.|..-.+.......+.++.+|.+.+++++|.|....+.+|.+|..+.+|
T Consensus 151 -~Y~~~~~~t---~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 151 -GYNFETPAS---ALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred -ceEeeccCC---CCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 011111110 111111 14455666677766666655555588999999999999999999999999999999999
Q ss_pred eCCCCeeE-EEeecCCCCEEEEEEeCCC-CEEEEEECCCeeeEeeCCCc
Q 000961 276 DVTKRTGV-QTFRREHDRFWILASHPEM-NLLAAGHDSGMIVFKLERER 322 (1208)
Q Consensus 276 d~~~~~~~-~~~~~~~~~i~~la~sp~~-~~la~g~~~gi~v~~l~~~~ 322 (1208)
|+.-++.+ ....++.+.+..+..-+-- ++++.+.++++.+|++.-.+
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 99755443 4466788888777765544 45666778888899876543
No 278
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.10 E-value=8.3e-09 Score=117.17 Aligned_cols=189 Identities=16% Similarity=0.254 Sum_probs=157.5
Q ss_pred eCCCCEEEEEecCCeEEEEECCCCeEEEEecc---cccCEEEEEEE------c--------------CCCEEEEEECCCe
Q 000961 18 HSKRPWILASLHSGVIQLWDYRMGTLIDRFDE---HDGPVRGVHFH------K--------------SQPLFVSGGDDYK 74 (1208)
Q Consensus 18 spdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~---h~~~V~~l~fs------p--------------~~~~Lasgs~Dg~ 74 (1208)
.|-+.++|....||.+++||..++++...|.. -.+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35577899999999999999999998888753 24445555552 1 3347888889999
Q ss_pred EEEEECCCCeEEEEEc--cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEE
Q 000961 75 IKVWNYKMHRCLFTLL--GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 75 I~vWd~~~~~~~~~l~--~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s 152 (1208)
|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+......+.+++.+||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999998888775 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-----CCEEEEE-eCCC
Q 000961 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-----LPLIVSG-ADDR 226 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----g~~L~sg-s~dg 226 (1208)
++ ++|.+||+++.+. ...+.||.++|.+++|--. |.+++++ ..+.
T Consensus 162 as--~~ik~~~~~~kev---------------------------v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEV---------------------------VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred cc--ceEEEEEccCceE---------------------------EEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 87 7899999988653 4488999999999999876 6666654 3456
Q ss_pred cEEEEECCC
Q 000961 227 QVKLWRMNE 235 (1208)
Q Consensus 227 ~I~iwd~~~ 235 (1208)
.+.+|-...
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 677776554
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=8.6e-10 Score=137.25 Aligned_cols=191 Identities=17% Similarity=0.361 Sum_probs=158.0
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEec-ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1208)
.-|-..|.++.=||..++-++|+.||.|++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|... .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 3455678999999999999999999999999999888887774 334889999999999999999999999999987 67
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEE---CCCcEEEEECCC---CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYPWIVSAS---DDQTIRIWNWQS---RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~~l~s~s---~Dg~I~iwd~~s---~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
.....+.|......+.|-. ..+++++ +++.+.+||..- ..++. +.|.+.++++++.|....|++|+.+|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc
Confidence 7778888999999998886 4566654 468999999642 23333 789999999999999999999999999
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|++||++..+..+. -+. ++ ...++++|+..|.++||++.....
T Consensus 2360 v~l~D~rqrql~h~--------------------------------~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHT--------------------------------FQA----LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred EEEeehHHHHHHHH--------------------------------hhh----hh-hhheeeccCcccceEEEEccccch
Confidence 99999987544332 111 44 557899999999999999988654
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.06 E-value=1.5e-08 Score=105.24 Aligned_cols=243 Identities=16% Similarity=0.129 Sum_probs=166.3
Q ss_pred CCEEEEEEeC---CCC-EEEEEecCCeEEEEECCCCeEEEEecccc---c---CEEEEEEEcCCCEEEEEECCCeEEEEE
Q 000961 10 NRVKGLSFHS---KRP-WILASLHSGVIQLWDYRMGTLIDRFDEHD---G---PVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 10 ~~V~~lafsp---dg~-~Lasg~~dg~I~iWd~~~g~~i~~l~~h~---~---~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1208)
+.+..+.|.. +|. .++-+-..|.|+++..........+.+-. - .-.++.|++.+.-++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4455666653 444 45556678889998765444333343221 1 245788999999999999999999777
Q ss_pred CCCCeEEE--EEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECC-CCeEEEE-EecCCCCEEEEEEeeC-CCEEEEE
Q 000961 80 YKMHRCLF--TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQ-SRTCISV-LTGHNHYVMCASFHPK-EDLVVSA 153 (1208)
Q Consensus 80 ~~~~~~~~--~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~-s~~~i~~-l~~h~~~V~~l~~~p~-~~~l~s~ 153 (1208)
........ ++++|.-.+....|+...+ .+.+|++|+.+..||++ .++.+.. .+.|...|.++.-+|. +.+|++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 66554443 7899999999999987654 78899999999999998 5555554 5678899999998874 5899999
Q ss_pred ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 000961 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWR 232 (1208)
Q Consensus 154 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd 232 (1208)
+.|-.|++||.+...+... -..-.++|+.+.++|.-. .++.++.-+-.+|-+
T Consensus 230 sYDe~i~~~DtRnm~kPl~---------------------------~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLF---------------------------KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred ccccceeeeehhcccCccc---------------------------cCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 9999999999986443211 011237899999998533 333334444467777
Q ss_pred CCCCcee---EEEeecCcCCCeEEEEEccCCCEEEEEe-CCCcEE-EEeCCC
Q 000961 233 MNETKAW---EVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIR-VWDVTK 279 (1208)
Q Consensus 233 ~~~~~~~---~~~~l~~h~~~V~~l~~sp~g~~l~sgs-~dg~I~-vwd~~~ 279 (1208)
++..... .......|.+-+..-.|......|++++ .|+.++ +|-.-+
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 7665432 2444556776666777755556788765 355544 554333
No 281
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.06 E-value=2.5e-08 Score=113.30 Aligned_cols=187 Identities=14% Similarity=0.175 Sum_probs=150.1
Q ss_pred cCCCEEEEEECCCeEEEEECCCCeEEEEEcc---CCCCEEEEEEc--------------------CCCCEEEEEECCCcE
Q 000961 61 KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG---HLDYIRTVQFH--------------------HEYPWIVSASDDQTI 117 (1208)
Q Consensus 61 p~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~---h~~~I~~v~fs--------------------~d~~~l~s~s~Dg~I 117 (1208)
|.+.++|....||.+++|+..+++....+.. -++..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887776642 22344444442 233467888889999
Q ss_pred EEEECCCCeEEEEEe--cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 118 RIWNWQSRTCISVLT--GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 118 ~iwd~~s~~~i~~l~--~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-------------------------- 136 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-------------------------- 136 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee--------------------------
Confidence 999999999888876 6899999999999889999999999999999876442
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC-----CCEEEEEe-CC
Q 000961 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-----QDIIVSNS-ED 269 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~-----g~~l~sgs-~d 269 (1208)
..........+.+++.+|||..+++++ ++|++||+.+.+. +.++.+|.++|++++|-.+ |.+++++. .+
T Consensus 137 -~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 137 -IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred -eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 335566677889999999999999886 7899999999998 8999999999999999876 66666543 34
Q ss_pred CcEEEEeCC
Q 000961 270 KSIRVWDVT 278 (1208)
Q Consensus 270 g~I~vwd~~ 278 (1208)
..+.+|-..
T Consensus 212 r~i~~w~v~ 220 (541)
T KOG4547|consen 212 RGITVWVVE 220 (541)
T ss_pred cceeEEEEE
Confidence 456777544
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.05 E-value=1.6e-05 Score=97.73 Aligned_cols=221 Identities=13% Similarity=0.101 Sum_probs=134.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEEC----CCCc
Q 000961 93 LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI----GALR 168 (1208)
Q Consensus 93 ~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl----~~~~ 168 (1208)
.+.|.++.|..+...++.+..+|.|.+-|.++.... ....-...|.+++|+||+..++..+..+++.+-+- -..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 368999999999999999999999999998775432 22334577999999999999999998888776442 1111
Q ss_pred cccc--cCCCcceeecc--ccccccccccceE------EEEEec---cCCCeEEEEEcCCCCEEEEEe-----CCCcEEE
Q 000961 169 KKTV--SPADDILRLSQ--MNTDLFGGVDAVV------KYVLEG---HDRGVNWAAFHPTLPLIVSGA-----DDRQVKL 230 (1208)
Q Consensus 169 ~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~---h~~~V~~l~~sp~g~~L~sgs-----~dg~I~i 230 (1208)
.... .+.+....... ...++.|+..... .....+ -...=++++|-.||+++++.. ..+.|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1100 00011111111 1111111111000 000000 122234689999999998843 3378999
Q ss_pred EECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCeeEEE----eecCCCCEEEEEEeCCCC
Q 000961 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS---EDKSIRVWDVTKRTGVQT----FRREHDRFWILASHPEMN 303 (1208)
Q Consensus 231 wd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs---~dg~I~vwd~~~~~~~~~----~~~~~~~i~~la~sp~~~ 303 (1208)
||.. +.. -..-....+.-.+++|-|.|.++++-. +|+.|.+|.-+ |-.-.. +......+..++|+.++.
T Consensus 227 ~drE-g~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 227 YDRE-GAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred eccc-chh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCC
Confidence 9987 332 112222334456899999999998854 45679999843 332222 222334488999999999
Q ss_pred EEEE---EECCC-eeeEee
Q 000961 304 LLAA---GHDSG-MIVFKL 318 (1208)
Q Consensus 304 ~la~---g~~~g-i~v~~l 318 (1208)
+||+ ...+. +.+|..
T Consensus 303 iLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ceeeeecccccceEEEEEe
Confidence 9997 33333 666654
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=1.1e-09 Score=136.36 Aligned_cols=218 Identities=18% Similarity=0.307 Sum_probs=169.9
Q ss_pred cCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEc-cCCCCEEEEEEcCCCCE
Q 000961 29 HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL-GHLDYIRTVQFHHEYPW 107 (1208)
Q Consensus 29 ~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~-~h~~~I~~v~fs~d~~~ 107 (1208)
-++...-|..+.+... ++.|-..|.++.=||..++-+||+.||.|++|.+..+..+..+. .....|+.+.|+.+|+.
T Consensus 2188 ~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK 2265 (2439)
T ss_pred CCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc
Confidence 3444444554332222 22355678899999999999999999999999999888777663 23378999999999999
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE---CCCeEEEEECCCCccccccCCCcceeeccc
Q 000961 108 IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS---LDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (1208)
Q Consensus 108 l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s---~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~ 184 (1208)
+..+..||.+.+|... .++....+.|+.......|-. ..+++++ .++.+.+||..-....
T Consensus 2266 ~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-------------- 2328 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-------------- 2328 (2439)
T ss_pred eeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc--------------
Confidence 9999999999999976 666777788999888888875 5677664 4788999996432211
Q ss_pred cccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEE
Q 000961 185 NTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIV 264 (1208)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~ 264 (1208)
.++-..|.++++++++-|..++|++|+.+|.|++||++..+. .++++. ++ ...+++
T Consensus 2329 ------------s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2329 ------------SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TREYFV 2384 (2439)
T ss_pred ------------ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhheee
Confidence 113378999999999999999999999999999999987775 333332 44 567899
Q ss_pred EEeCCCcEEEEeCCCCeeEEEeecC
Q 000961 265 SNSEDKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 265 sgs~dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
+|+..|.++||++.....+.++...
T Consensus 2385 ~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred ccCcccceEEEEccccchhhcCchh
Confidence 9999999999999988777776643
No 284
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=2.7e-07 Score=105.93 Aligned_cols=53 Identities=17% Similarity=-0.011 Sum_probs=46.0
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCC
Q 000961 721 MGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNV 773 (1208)
Q Consensus 721 ~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~ 773 (1208)
...++.|...|||+-|+++|.+.+++..|+.|+-+.|.|+.|-+|++.+...+
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e 821 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPE 821 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCch
Confidence 34445567789999999999999999999999999999999999999876444
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=3.9e-07 Score=118.79 Aligned_cols=261 Identities=14% Similarity=0.156 Sum_probs=164.4
Q ss_pred EEEEEeCC-CCEEEEEecCCeEEEEECCCCeEEEEecc--c------------ccCEEEEEEEcCCCEEEEEE-CCCeEE
Q 000961 13 KGLSFHSK-RPWILASLHSGVIQLWDYRMGTLIDRFDE--H------------DGPVRGVHFHKSQPLFVSGG-DDYKIK 76 (1208)
Q Consensus 13 ~~lafspd-g~~Lasg~~dg~I~iWd~~~g~~i~~l~~--h------------~~~V~~l~fsp~~~~Lasgs-~Dg~I~ 76 (1208)
..++++++ +...++-..++.|++||. +|+.+..+.+ . -..-.+++++++++.|.++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46899885 455555566788999996 4555544432 1 11247899999888665554 557899
Q ss_pred EEECCCCeEEEEEccC-----------------CCCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEecC----
Q 000961 77 VWNYKMHRCLFTLLGH-----------------LDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGH---- 134 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h-----------------~~~I~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h---- 134 (1208)
++|..++. +.++.+- ...-..++|+|+ +..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987754 3333210 113467999994 555666677899999998876543 22111
Q ss_pred -----------CCCEEEEEEeeCCCEEE-EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 135 -----------NHYVMCASFHPKEDLVV-SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 135 -----------~~~V~~l~~~p~~~~l~-s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
-.....++++|+++.|+ +-+.++.|++||+.+.............. .+...++..++.... .
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~---~~l~~fG~~dG~g~~---~ 801 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS---DNLFKFGDHDGVGSE---V 801 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC---cccccccCCCCchhh---h
Confidence 12356799999998554 55567899999987654321110000000 000011111110000 0
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-----------ecCcCCCeEEEEEccCCCEEEEEeCCCc
Q 000961 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT-----------LRGHMNNVSCVMFHAKQDIIVSNSEDKS 271 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~-----------l~~h~~~V~~l~~sp~g~~l~sgs~dg~ 271 (1208)
.-..-..++++++|.++++-+.++.|++||..++....+.. ..........++++++|+++++.+.++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 11123578999999988888899999999998876421111 0112235788999999999999999999
Q ss_pred EEEEeCCCCee
Q 000961 272 IRVWDVTKRTG 282 (1208)
Q Consensus 272 I~vwd~~~~~~ 282 (1208)
|++||+.+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988765
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=1.6e-07 Score=97.81 Aligned_cols=269 Identities=13% Similarity=0.092 Sum_probs=174.0
Q ss_pred CCEEEEEEeCCCCEEEEEe------------cCCeEEEEECCCCeEEE--Ee-cccccCEEEEEEEc---CCC-EEEEEE
Q 000961 10 NRVKGLSFHSKRPWILASL------------HSGVIQLWDYRMGTLID--RF-DEHDGPVRGVHFHK---SQP-LFVSGG 70 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~------------~dg~I~iWd~~~g~~i~--~l-~~h~~~V~~l~fsp---~~~-~Lasgs 70 (1208)
-++.+++--+ +.||+|+ ..|.+.+|++.+.+... ++ ......+..+.|.- +|. .++-+.
T Consensus 15 ~~~C~l~~~~--~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~ 92 (339)
T KOG0280|consen 15 VPICCLCHTR--NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAH 92 (339)
T ss_pred CCcccccccc--ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecc
Confidence 3444444333 3777774 34778999987765544 11 12344567777753 444 566667
Q ss_pred CCCeEEEEECCCCeEEEEEccCCC------CEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE--EEEEecCCCCEEEEE
Q 000961 71 DDYKIKVWNYKMHRCLFTLLGHLD------YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC--ISVLTGHNHYVMCAS 142 (1208)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~h~~------~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~--i~~l~~h~~~V~~l~ 142 (1208)
.+|.|.++..........+.+-+. ...++.|++.+..++++..+|.+.+-+...... ++.++.|.-....+.
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~ 172 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK 172 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee
Confidence 789999998765544444443221 245788999999999999999999766555443 347889999999999
Q ss_pred EeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEE
Q 000961 143 FHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIV 220 (1208)
Q Consensus 143 ~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~ 220 (1208)
|+... +.+.+|+.|+.+..||++..... +.....-|..+|.++.-+| .+.+|+
T Consensus 173 f~~~~pnlvytGgDD~~l~~~D~R~p~~~-------------------------i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 173 FSDKEPNLVYTGGDDGSLSCWDIRIPKTF-------------------------IWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred cccCCCceEEecCCCceEEEEEecCCcce-------------------------eeecceeeecceEEEecCCCCCceEE
Confidence 98654 78999999999999999842211 1112456889999998886 567999
Q ss_pred EEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCCee-----EEEeecCCCCE
Q 000961 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ--DIIVSNSEDKSIRVWDVTKRTG-----VQTFRREHDRF 293 (1208)
Q Consensus 221 sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g--~~l~sgs~dg~I~vwd~~~~~~-----~~~~~~~~~~i 293 (1208)
+|+.|-.|++||.++-... +.. ....+.|+.+.++|.- .+++++-.+| .+|-+...+.. ....+.|.+-.
T Consensus 228 TGsYDe~i~~~DtRnm~kP-l~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~ 304 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKP-LFK-AKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLC 304 (339)
T ss_pred EeccccceeeeehhcccCc-ccc-CccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecccccccee
Confidence 9999999999999864431 222 1234789999999943 3444544444 56665554322 22233344434
Q ss_pred EEEEEeCCCCEEEEE
Q 000961 294 WILASHPEMNLLAAG 308 (1208)
Q Consensus 294 ~~la~sp~~~~la~g 308 (1208)
..-.|.....++|++
T Consensus 305 YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 305 YGGDWDSKDSFLATC 319 (339)
T ss_pred eccccccccceeeee
Confidence 444443333455553
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.93 E-value=7.4e-07 Score=105.03 Aligned_cols=263 Identities=8% Similarity=-0.012 Sum_probs=157.7
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEE
Q 000961 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTV 99 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v 99 (1208)
.+..+++++.+|.|.-+|..+|+.+-++........... .++..+++++.++.+..+|..+|+.+....... .+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence 366788888899999999999998877654332222222 246778888899999999999999887665322 22211
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEE-----EEEEeeCCCEEEEEECCCeEEEEECCCCccccccC
Q 000961 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVM-----CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSP 174 (1208)
Q Consensus 100 ~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~-----~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~ 174 (1208)
-.. .+..++.++.+|.|..||..+|+.+.........+. +.... +..++.++.+|.+..+|..+++......
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 111 244677788899999999999998887754332211 11122 3477888888999999988776432211
Q ss_pred CCcc-----------e-e--eccccccccccccceEEEEEeccCCCeEE-E------EEcCCCCEEEEEeCCCcEEEEEC
Q 000961 175 ADDI-----------L-R--LSQMNTDLFGGVDAVVKYVLEGHDRGVNW-A------AFHPTLPLIVSGADDRQVKLWRM 233 (1208)
Q Consensus 175 ~~~~-----------~-~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l------~~sp~g~~L~sgs~dg~I~iwd~ 233 (1208)
.... . . ....+.......+.. .+.+...++.+.+ . .....+..+++++.+|.+..+|.
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEEC
Confidence 0000 0 0 000000111111111 1111111221111 0 11124567888889999999999
Q ss_pred CCCceeEEEeecCc-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCE
Q 000961 234 NETKAWEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (1208)
Q Consensus 234 ~~~~~~~~~~l~~h-~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i 293 (1208)
.+++. +...... .....+... .+..+++++.+|.|+++|..+++.+..+..+...+
T Consensus 297 ~tG~~--~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 297 RSGSE--LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred CCCcE--EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 88875 2222111 111222222 36788999999999999999999988877655443
No 288
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.90 E-value=3.1e-07 Score=107.53 Aligned_cols=351 Identities=13% Similarity=0.160 Sum_probs=180.2
Q ss_pred CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEE
Q 000961 292 RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (1208)
Q Consensus 292 ~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (1208)
....++++|+|+++++++++. ..+|.....+... .+.-...
T Consensus 34 ~p~~ls~npngr~v~V~g~ge---------------------------Y~iyt~~~~r~k~------------~G~g~~~ 74 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGE---------------------------YEIYTALAWRNKA------------FGSGLSF 74 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTE---------------------------EEEEETTTTEEEE------------EEE-SEE
T ss_pred CCeeEEECCCCCEEEEEcCCE---------------------------EEEEEccCCcccc------------cCceeEE
Confidence 467899999999998866443 3344422111111 1144668
Q ss_pred EEcCCCCEEEEEEecCCCEEEEEE-ccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-Cceeeee
Q 000961 372 SYSPTENAVLICSDVDGGSYELYV-IPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKS 449 (1208)
Q Consensus 372 ~~spdg~~llv~~~~~~g~v~l~~-l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~l 449 (1208)
.|.+.+++ ++... ++.+.++. +......... .. ..+..+.. |.++...+ ++.|.+||.. +..++++
T Consensus 75 vw~~~n~y-Av~~~--~~~I~I~kn~~~~~~k~i~--~~---~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i 142 (443)
T PF04053_consen 75 VWSSRNRY-AVLES--SSTIKIYKNFKNEVVKSIK--LP---FSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRI 142 (443)
T ss_dssp EE-TSSEE-EEE-T--TS-EEEEETTEE-TT-------S---S-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEE
T ss_pred EEecCccE-EEEEC--CCeEEEEEcCccccceEEc--CC---cccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEE
Confidence 89986664 33332 47788864 3222211111 11 12222222 87777777 5689999999 7788888
Q ss_pred cCCcceEEEEEeCCccEEEE-eCCeEEEEEcCCC--------------eEEEEEeCCCeeEEEECCCCCEEEEEeCCeEE
Q 000961 450 ILPIAADAIFYAGTGNLLCR-AEDRVVIFDLQQR--------------LVLGDLQTPFVKYVVWSNDMESVALLSKHAII 514 (1208)
Q Consensus 450 ~~~~~v~~i~~s~dg~~Las-~dg~v~lwdl~~~--------------~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~ 514 (1208)
..+ +|..+.|+++|.+++. ++..+++++.... ..+.++. ..|++..|..| -++.+...+--|
T Consensus 143 ~v~-~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d-~fiYtT~~~lkY 219 (443)
T PF04053_consen 143 DVS-AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED-CFIYTTSNHLKY 219 (443)
T ss_dssp SS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT-EEEEE-TTEEEE
T ss_pred ecC-CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC-EEEEEcCCeEEE
Confidence 866 4899999999998855 6788888876544 3344433 57999999877 333333332234
Q ss_pred EEecCccceeeeecceeeeeeEEecCCeEEEecCCeeeeEecCCceeEEEeccccEEEEEE---eC---CEEEEEecCCc
Q 000961 515 IASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKV---SG---NTIFCLDRDGK 588 (1208)
Q Consensus 515 i~~~~~~~~~~~~e~~~iks~~wd~~~~~iy~t~~~i~y~l~~g~~g~i~~l~~~~~l~~~---~~---~~l~~l~r~~~ 588 (1208)
+.+.+...+..+.....+- +.. .....-|++-....-....++...+.++. ++ ..+.++..+.-
T Consensus 220 l~~Ge~~~i~~ld~~~yll-gy~---------~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~l 289 (443)
T PF04053_consen 220 LVNGETGIIAHLDKPLYLL-GYL---------PKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNL 289 (443)
T ss_dssp EETTEEEEEEE-SS--EEE-EEE---------TTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHT
T ss_pred EEcCCcceEEEcCCceEEE-EEE---------ccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhh
Confidence 5555556565554432221 111 11111122111111111111111111000 00 00001100000
Q ss_pred eEEEEcChhh-------------HHHHHhhcccccccchHHHHHHHhCCChhhhhccccCcch------hhHHHHhcCCH
Q 000961 589 NRAIVIDATE-------------YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERT------RFNLALESGNI 649 (1208)
Q Consensus 589 ~~~~~ld~~e-------------~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~~~~~------~f~lal~~g~~ 649 (1208)
+- .|+..+ .+..++..++.. .-.....+.|..+.|++..++... -.+.|+..||+
T Consensus 290 l~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 290 LP--NIPKDQGQSIARFLEKKGYPELALQFVTDPD----HRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp GG--G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----HHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBH
T ss_pred cc--cCChhHHHHHHHHHHHCCCHHHHHhhcCChH----HHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCH
Confidence 00 001111 223355554432 234557889999999999876643 24899999999
Q ss_pred HHHHHHHHHhCC-------------hhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHH
Q 000961 650 QIAVASAKEIDE-------------KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLK 712 (1208)
Q Consensus 650 ~~A~~~a~~~~~-------------~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~ 712 (1208)
+.|.++.++.++ .+-.++||..|...|++.+|-.|+.-+||++....++..+|......-+++
T Consensus 364 ~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ 439 (443)
T PF04053_consen 364 ELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFAR 439 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHH
Confidence 999999887776 567788889999999999999999999999888888877777776655543
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=2.4e-06 Score=111.53 Aligned_cols=262 Identities=12% Similarity=0.168 Sum_probs=160.1
Q ss_pred EEEEEEcC-CCEEEEEECCCeEEEEECCCCeEEEEEcc--------------CCCCEEEEEEcCCCCEEEEEEC-CCcEE
Q 000961 55 RGVHFHKS-QPLFVSGGDDYKIKVWNYKMHRCLFTLLG--------------HLDYIRTVQFHHEYPWIVSASD-DQTIR 118 (1208)
Q Consensus 55 ~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~--------------h~~~I~~v~fs~d~~~l~s~s~-Dg~I~ 118 (1208)
..++++++ +.++++-+.++.|.+||.. +..+..+.+ +-.....+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46888875 5677777788999999976 444444322 1123578999998887766654 46899
Q ss_pred EEECCCCeEEEEEecC-----------------CCCEEEEEEee-CCCEEEEEECCCeEEEEECCCCccccccCCCccee
Q 000961 119 IWNWQSRTCISVLTGH-----------------NHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180 (1208)
Q Consensus 119 iwd~~s~~~i~~l~~h-----------------~~~V~~l~~~p-~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~ 180 (1208)
++|..++.. .++.+. -.....++++| ++..+++.+.++.|++||..+.............
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~- 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER- 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc-
Confidence 999877653 333210 12346799999 4566677777899999998765432211100000
Q ss_pred eccccccccccccceEEEEEeccCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEE-----------eec---
Q 000961 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL-IVSGADDRQVKLWRMNETKAWEVD-----------TLR--- 245 (1208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~-L~sgs~dg~I~iwd~~~~~~~~~~-----------~l~--- 245 (1208)
...+. . .....-.....++++|++.. +++-+.++.|++||+.++....+. .+.
T Consensus 728 ------~~~g~-~-----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 728 ------NLNGS-S-----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred ------cCCCC-c-----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 00000 0 00011234567999999984 455566789999999876531111 000
Q ss_pred -----CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC-------------CCCEEEEEEeCCCCEEEE
Q 000961 246 -----GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-------------HDRFWILASHPEMNLLAA 307 (1208)
Q Consensus 246 -----~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-------------~~~i~~la~sp~~~~la~ 307 (1208)
........++++++|+++++.+.++.|++||..++......... -.....++++++|+++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 01123468999999999999999999999999877654332110 012445555555554444
Q ss_pred EECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeec
Q 000961 308 GHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (1208)
Q Consensus 308 g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~ 357 (1208)
.+ .++.|++||+.+++......+.
T Consensus 876 Dt--------------------------~Nn~Irvid~~~~~~~~~~~l~ 899 (1057)
T PLN02919 876 DT--------------------------NNSLIRYLDLNKGEAAEILTLE 899 (1057)
T ss_pred EC--------------------------CCCEEEEEECCCCccceeEeec
Confidence 33 5778999999887654444444
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.4e-08 Score=112.38 Aligned_cols=183 Identities=17% Similarity=0.260 Sum_probs=132.3
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC-------CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCC
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-------SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~-------s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
.+..+.||...|+.++-..+.+-+++++.|.+|++|.++ +..|..+++.|..+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345678999999999887788889999999999999886 335778889999999999999888777765 78
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNET 236 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sg-s~dg~I~iwd~~~~ 236 (1208)
.|.+||.--++...... .....+..+.|.++. +-+...++.| +...+|+++|.+..
T Consensus 805 giHlWDPFigr~Laq~~----------------------dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQME----------------------DAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred cceeecccccchhHhhh----------------------cCcccCCCceeEecc-cCcchheeeeccchhhheeeecccc
Confidence 99999975433321100 000111122222222 1134455554 67889999999887
Q ss_pred ce---eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCC
Q 000961 237 KA---WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR 292 (1208)
Q Consensus 237 ~~---~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 292 (1208)
.. |.+....+....+.+++..|.|+.++++-.+|+|.+.|.++|+.+..++.....
T Consensus 862 e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd 920 (1034)
T KOG4190|consen 862 EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD 920 (1034)
T ss_pred cceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch
Confidence 64 223333556677999999999999999999999999999999988776644433
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=9.1e-09 Score=113.96 Aligned_cols=215 Identities=16% Similarity=0.275 Sum_probs=157.8
Q ss_pred EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC-------CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCc
Q 000961 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK-------MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQT 116 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~-------~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~ 116 (1208)
+..|.+|...|+.++--.+.+-+++++.|++|++|.++ +..|.++++.|+.+|.++.|..+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45678999999999888888899999999999999986 345889999999999999999998887765 789
Q ss_pred EEEEECCCCeEEEEEe-----cCCCCEEEEEEeeCCCEEEE-EECCCeEEEEECCCCccccccCCCcceeeccccccccc
Q 000961 117 IRIWNWQSRTCISVLT-----GHNHYVMCASFHPKEDLVVS-ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG 190 (1208)
Q Consensus 117 I~iwd~~s~~~i~~l~-----~h~~~V~~l~~~p~~~~l~s-~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1208)
|.+||.--++.+..+. +..+.|.|+.-- +...++. ++...+|+++|.+.......
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E------------------ 866 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCE------------------ 866 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceee------------------
Confidence 9999988777665332 222334444321 2333433 47789999999887543211
Q ss_pred cccceEEE-EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC
Q 000961 191 GVDAVVKY-VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269 (1208)
Q Consensus 191 ~~~~~~~~-~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d 269 (1208)
.+. ...+...-+.+++..|.|++++.+-.+|.|.+.|.++++. +..++........++ .|..+.++....|
T Consensus 867 -----~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v--INswrpmecdllqla-apsdq~L~~sald 938 (1034)
T KOG4190|consen 867 -----LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQLA-APSDQALAQSALD 938 (1034)
T ss_pred -----EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce--eccCCcccchhhhhc-CchhHHHHhhccc
Confidence 111 1123446688999999999999999999999999999986 556665554444444 3566678877788
Q ss_pred CcEEE-EeCCCCeeEEEee
Q 000961 270 KSIRV-WDVTKRTGVQTFR 287 (1208)
Q Consensus 270 g~I~v-wd~~~~~~~~~~~ 287 (1208)
.++.| |....+....+.+
T Consensus 939 HslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 939 HSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred ceeEeeehhcCCeeeeccC
Confidence 88888 8776665554444
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=1.9e-08 Score=115.41 Aligned_cols=263 Identities=18% Similarity=0.245 Sum_probs=176.9
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-eEEEEeccccc--CEEEEEEEcC--CCEEEEEECCCeEEEEECC--
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-TLIDRFDEHDG--PVRGVHFHKS--QPLFVSGGDDYKIKVWNYK-- 81 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g-~~i~~l~~h~~--~V~~l~fsp~--~~~Lasgs~Dg~I~vWd~~-- 81 (1208)
.+++.++..+|.|+-+|.++.-| +.+-|+... +...-+ .|-. .|-.+.|+|. .++-++......-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 35788899999999999988777 555665433 222222 2322 3667778764 4455666666677899985
Q ss_pred -CCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCC-eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 82 -MHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 82 -~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~-~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
+...-+.+.+|...|+.+.|+|..+ .+++++.|-.+..||+++. ..+..+..-...-..+.|+-....+.+.+....
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 3455677889999999999999877 7889999999999999875 445555554556678999887766777777889
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
|++||.+.+.. +...+.+|...|+.+.|.. ....+.+.+.||+|++||.....
T Consensus 182 i~vwd~r~gs~--------------------------pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 182 IFVWDLRKGST--------------------------PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eEEEeccCCCc--------------------------ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 99999987432 3457778888899998875 23468889999999999987654
Q ss_pred eeEEEeecCcCCCeEEEEEccCCCEEEEE--eCCCcEEE---------EeCC-CCeeEEEeecCCCCEEEEEEeC
Q 000961 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSN--SEDKSIRV---------WDVT-KRTGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 238 ~~~~~~l~~h~~~V~~l~~sp~g~~l~sg--s~dg~I~v---------wd~~-~~~~~~~~~~~~~~i~~la~sp 300 (1208)
.. .........+|..-.+-|-|.-...- -.+..+.+ |+.. ..+++++|.+|.+.|....|..
T Consensus 236 ~e-~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 236 TE-SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cc-cceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 32 22223345566666666644322211 11113333 3322 2356677777776665554443
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.84 E-value=8.5e-07 Score=91.17 Aligned_cols=232 Identities=9% Similarity=0.016 Sum_probs=154.3
Q ss_pred cCCeEEEEECCCCe--EEEEecccccCEEEEEEEcC-----CCEEEEEECCCeEEEEECCCCeEEE-EEccCCCCEEEEE
Q 000961 29 HSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKS-----QPLFVSGGDDYKIKVWNYKMHRCLF-TLLGHLDYIRTVQ 100 (1208)
Q Consensus 29 ~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~-----~~~Lasgs~Dg~I~vWd~~~~~~~~-~l~~h~~~I~~v~ 100 (1208)
....+-+|+.-+.. .+... +.+.|-|. ..+|+.||..|...+|...+.+... ....|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 34457777764432 22222 45666653 3489999999999999998654332 2233444333222
Q ss_pred EcCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcce
Q 000961 101 FHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIL 179 (1208)
Q Consensus 101 fs~d-~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~ 179 (1208)
=.-+ .-.+..++.|.++++.++..+..........-.+.++.++++++++++.+....|..|.+.......
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-------- 194 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-------- 194 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee--------
Confidence 1112 2257778889999999887554333322122237899999999999999999999999987633221
Q ss_pred eeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEeecCcCCCeEEEEE
Q 000961 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW---EVDTLRGHMNNVSCVMF 256 (1208)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~---~~~~l~~h~~~V~~l~~ 256 (1208)
.+.........-.+..|+.....+++++.||++.|||++..... ...+-..|.+.+..+.|
T Consensus 195 ----------------~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~F 258 (344)
T KOG4532|consen 195 ----------------ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRF 258 (344)
T ss_pred ----------------eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEe
Confidence 12123333444567899999999999999999999999875432 12233568999999999
Q ss_pred ccCCC--EEEEEeCCCcEEEEeCCCCeeEEEeecCCC
Q 000961 257 HAKQD--IIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291 (1208)
Q Consensus 257 sp~g~--~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 291 (1208)
++.|. +|...-.-+.+.+.|++++...+.+....+
T Consensus 259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred cCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 98664 444444457799999999887777654444
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.1e-06 Score=101.54 Aligned_cols=196 Identities=16% Similarity=0.241 Sum_probs=124.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCC-eEEEEEccCCCEEEEEeCCCc-----EEEEeCCCC---
Q 000961 210 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN-VSCVMFHAKQDIIVSNSEDKS-----IRVWDVTKR--- 280 (1208)
Q Consensus 210 l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~-V~~l~~sp~g~~l~sgs~dg~-----I~vwd~~~~--- 280 (1208)
-+|++.+..++.|+.+|.|.+.+-.-.. +..+..+... |..+-...+.++|++.++|+. ++||++...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~---~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQL---IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccccee---eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 3577888899999999999888654332 3556666665 444444444578888887754 899998643
Q ss_pred ---eeE---EEee----cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc
Q 000961 281 ---TGV---QTFR----REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (1208)
Q Consensus 281 ---~~~---~~~~----~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~ 350 (1208)
.++ ..+. ....++.+++.|.+-+.+|+|-.+|.++.--. +.+ .|+..+.-
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G----------Di~---RDrgsr~~------- 165 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG----------DIL---RDRGSRQD------- 165 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC----------cch---hcccccee-------
Confidence 222 1111 12457889999999999999998876554211 000 11111111
Q ss_pred eeeEeecCCCCCCCCcCCeEEEEcCCCCE-EEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCc-EEE
Q 000961 351 TQVIPIRRPGSTSLNQSPRTLSYSPTENA-VLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNR-FAV 428 (1208)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~-llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~-~l~ 428 (1208)
....+ ..+|+.+++..+++. +.+++. ..|.+|.+.+.. .. ......+.....+..|++... +++
T Consensus 166 -----~~~~~----~~pITgL~~~~d~~s~lFv~Tt---~~V~~y~l~gr~-p~-~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 166 -----YSHRG----KEPITGLALRSDGKSVLFVATT---EQVMLYSLSGRT-PS-LKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred -----eeccC----CCCceeeEEecCCceeEEEEec---ceeEEEEecCCC-cc-eeeeccCCccceeeecCCCCccEEE
Confidence 11111 239999999999988 334444 579999999654 22 213566666788888886655 555
Q ss_pred EEcCCCEEEEEecCCc
Q 000961 429 LDKSSNQVLVKNLKNE 444 (1208)
Q Consensus 429 ~~~~dg~I~Iwdl~~~ 444 (1208)
++ +.-+.+|+.++.
T Consensus 232 a~--~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 232 AG--SEFLYFYDSDGR 245 (933)
T ss_pred ec--CceEEEEcCCCc
Confidence 54 477999998843
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4e-06 Score=98.73 Aligned_cols=188 Identities=15% Similarity=0.169 Sum_probs=122.9
Q ss_pred CCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 136 HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 136 ~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
..+.|++++ ++.++.|+.+|.|++++....-. ....|... ..+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-----------------------------~~~~~s~~------~~~ 82 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-----------------------------TNFDHSSS------ILE 82 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCccc-----------------------------cccccccc------ccC
Confidence 456677776 57899999999999999765321 11122222 568
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC-----CCEEEEEeCCCcEEEEeCCC--CeeEEEeec
Q 000961 216 LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK-----QDIIVSNSEDKSIRVWDVTK--RTGVQTFRR 288 (1208)
Q Consensus 216 g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~-----g~~l~sgs~dg~I~vwd~~~--~~~~~~~~~ 288 (1208)
|.++++|+.||+|.|-.+.+.+. .. ......++.+++++|+ .+.+++|+.-| +.++.-.- .+.......
T Consensus 83 Gey~asCS~DGkv~I~sl~~~~~--~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 83 GEYVASCSDDGKVVIGSLFTDDE--IT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred CceEEEecCCCcEEEeeccCCcc--ce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 99999999999999999988875 22 2234568999999997 56799999888 77765321 111113445
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCC
Q 000961 289 EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSP 368 (1208)
Q Consensus 289 ~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i 368 (1208)
..+.|.++.|. |+++|..++.|+.+++. .+++.+..++.+.....+ ...+
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~Gv~vyd~---------------------------~~~~~l~~i~~p~~~~R~-e~fp 208 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDGVKVYDT---------------------------PTRQRLTNIPPPSQSVRP-ELFP 208 (846)
T ss_pred CccceEEEEec--CcEEEEecCCCcEEEec---------------------------cccceeeccCCCCCCCCc-ccCC
Confidence 56788888886 77888888877665554 443333222222211111 3356
Q ss_pred eEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 369 RTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 369 ~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
..+.|.++.+.+ +.-+ .+|.+..+..
T Consensus 209 phl~W~~~~~LV-IGW~---d~v~i~~I~~ 234 (846)
T KOG2066|consen 209 PHLHWQDEDRLV-IGWG---DSVKICSIKK 234 (846)
T ss_pred CceEecCCCeEE-EecC---CeEEEEEEec
Confidence 778998876644 3333 4788888773
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=3.1e-06 Score=99.82 Aligned_cols=211 Identities=11% Similarity=0.039 Sum_probs=133.6
Q ss_pred CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCE-EEEEEC---CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC
Q 000961 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPL-FVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP 106 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~-Lasgs~---Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~ 106 (1208)
..|.+-|+. |...+.+.... .+....|+|+|+. ++..+. +..|.++|+.+++..... ...+......|+|||+
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 456666653 33344343333 7889999999984 554332 467999999887654433 3455667788999998
Q ss_pred EEEEEE-CC--CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC-C--eEEEEECCCCccccccCCCccee
Q 000961 107 WIVSAS-DD--QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-Q--TVRVWDIGALRKKTVSPADDILR 180 (1208)
Q Consensus 107 ~l~s~s-~D--g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D-g--~V~vwdl~~~~~~~~~~~~~~~~ 180 (1208)
.++... .+ ..|.++|+.+++.. .++.+........|+|||+.|+..+.. + .|.+.|+.+++....
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-------- 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-------- 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--------
Confidence 776543 23 56888898877643 444444434566899999888777642 3 567777765443211
Q ss_pred eccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEeecCcCCCe
Q 000961 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---------RQVKLWRMNETKAWEVDTLRGHMNNV 251 (1208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d---------g~I~iwd~~~~~~~~~~~l~~h~~~V 251 (1208)
...+. ....|+|+|+.|+..+.. ..|.+.|+.++.. ..+... ...
T Consensus 317 ------------------t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT~~-~~~ 370 (419)
T PRK04043 317 ------------------VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RRLTAN-GVN 370 (419)
T ss_pred ------------------ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EECCCC-CCc
Confidence 11111 124899999998877653 3678888888764 333322 223
Q ss_pred EEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 000961 252 SCVMFHAKQDIIVSNSEDK---SIRVWDVTK 279 (1208)
Q Consensus 252 ~~l~~sp~g~~l~sgs~dg---~I~vwd~~~ 279 (1208)
....|+|||+.|+..+.++ .+.+.++..
T Consensus 371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3588999999887766432 355666643
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=4.1e-06 Score=88.17 Aligned_cols=233 Identities=13% Similarity=0.163 Sum_probs=144.4
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCC--eEEEEe---cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 15 LSFHSKRPWILASLHSGVIQLWDYRMG--TLIDRF---DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 15 lafspdg~~Lasg~~dg~I~iWd~~~g--~~i~~l---~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
++.+++|+.||+. .|..|.|-..++. ..+.+. +.....=+-++||||+.+||.+...|+|+++|+.. ..++.+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5778899988876 6888888876543 223333 33344568899999999999999999999999874 444444
Q ss_pred cc-------CCCCEEEEEEcCCC------CEEEEEECCCcEEEEECCC-----CeEEEEEe---cCCCCEEEEEEeeCCC
Q 000961 90 LG-------HLDYIRTVQFHHEY------PWIVSASDDQTIRIWNWQS-----RTCISVLT---GHNHYVMCASFHPKED 148 (1208)
Q Consensus 90 ~~-------h~~~I~~v~fs~d~------~~l~s~s~Dg~I~iwd~~s-----~~~i~~l~---~h~~~V~~l~~~p~~~ 148 (1208)
.. -...|..+.|.+-. ..|++.+.+|.++-|-+.. .+...++. .+...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 32 12467777776532 1466667788888776532 23333332 2467899999999999
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCE--EEEEeCCC
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL--IVSGADDR 226 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~--L~sgs~dg 226 (1208)
+|++|+.... ..+. ......++++-..-.+.++ .++...|+
T Consensus 161 LLlVgG~~~~------~~~~-------------------------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM-------------------------------SKASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEeccCCC------CCcc-------------------------------ccccccCceEEEEcCCCCcEEEccccCcc
Confidence 8888774332 0000 0011122222222111111 11222121
Q ss_pred ------cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec
Q 000961 227 ------QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 227 ------~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 288 (1208)
+-.+|++.+.+. ..........|..|..||||+.|++...+|.|.+|++.+-+.......
T Consensus 204 ~~~~~~~~~~~~~~~~~~--fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKF--FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccccccccceeeccceee--eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 123444443332 111123456799999999999999999999999999998777666543
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.81 E-value=8.2e-07 Score=91.26 Aligned_cols=241 Identities=12% Similarity=0.105 Sum_probs=159.7
Q ss_pred EEEEeC-----CCCEEEEEecCCeEEEEECCCCeE-EEEecccccCEEEEEEEc-CCCEEEEEECCCeEEEEECCCCeEE
Q 000961 14 GLSFHS-----KRPWILASLHSGVIQLWDYRMGTL-IDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 14 ~lafsp-----dg~~Lasg~~dg~I~iWd~~~g~~-i~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1208)
.+.|-| .-.+||.|+..|...+|...+.+. +.....|...|+-+.=.- ..-.+..++.|.++++.+++-+..-
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 456666 345899999999999999876543 344445554433222111 1224666778888888887644332
Q ss_pred EEEccCCC--CEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eE-EE-EEecCCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 87 FTLLGHLD--YIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TC-IS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 87 ~~l~~h~~--~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-~~-i~-~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
..+ |.. .+.++.+++|++++++.++...|..|.+... +. +. ........-.+..|+.....+++++.||++.|
T Consensus 152 ~~~--h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 152 FAV--HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred cee--eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence 222 333 3788999999999999999999999988643 22 22 22233445578899999999999999999999
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcee
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~--~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
||++........ .......|.+.+..+.|++.|. +|+..-.-+.+.+.|+++.+..
T Consensus 230 ~DVR~~~tpm~~----------------------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 230 YDVRNMATPMAE----------------------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred EEecccccchhh----------------------hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 999875543211 0113345889999999998765 4555555678999999998764
Q ss_pred EEEee-----cCcC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 240 EVDTL-----RGHM-NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 240 ~~~~l-----~~h~-~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
++... ..|. ..|..-.|+.++..+.+.+++. +.-|++.+
T Consensus 288 q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 288 QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred eEEecCccccccccccccccccccCCCcccccccchh-hheeeccc
Confidence 33322 2233 3377777877777666665543 45555543
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=2e-06 Score=101.44 Aligned_cols=194 Identities=9% Similarity=0.074 Sum_probs=122.6
Q ss_pred CeEEEEEccCCCE-EEEEeCC---CcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceE
Q 000961 250 NVSCVMFHAKQDI-IVSNSED---KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF 325 (1208)
Q Consensus 250 ~V~~l~~sp~g~~-l~sgs~d---g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~ 325 (1208)
......|+|+|+. ++..+.+ ..|.++|+.+++...... ..+......|+|||+.++......
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~------------- 254 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPK------------- 254 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccC-------------
Confidence 6778999999985 5544433 469999998876654433 445566778999998887655321
Q ss_pred EecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEE--EccCCCCCC
Q 000961 326 AVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELY--VIPKDSIGR 403 (1208)
Q Consensus 326 s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~--~l~~~~~~~ 403 (1208)
.+..|.++++.+++..++..... ......|+|||+.+++.++. .+.-.|| ++.+.....
T Consensus 255 ----------g~~~Iy~~dl~~g~~~~LT~~~~--------~d~~p~~SPDG~~I~F~Sdr-~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 255 ----------GQPDIYLYDTNTKTLTQITNYPG--------IDVNGNFVEDDKRIVFVSDR-LGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred ----------CCcEEEEEECCCCcEEEcccCCC--------ccCccEECCCCCEEEEEECC-CCCceEEEEECCCCCeEe
Confidence 24567788887776544322211 22345799999999888763 3344444 444332211
Q ss_pred CcccccccCCceEEEEEEeCCcEEEEEcCC---------CEEEEEecCCceeeeecCCcceEEEEEeCCccEEEEe----
Q 000961 404 GDSVQDAKKGLGGSAIFIARNRFAVLDKSS---------NQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA---- 470 (1208)
Q Consensus 404 ~~~~~~~~~~~i~~~~fs~d~~~l~~~~~d---------g~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las~---- 470 (1208)
+ ...+.. ...|+|||++++..... ..|.+.|+++...+.+..........|+|||+.++..
T Consensus 316 l--t~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 316 V--VFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred C--ccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccC
Confidence 1 111211 24899999988776543 3688888886666666654434467899999988653
Q ss_pred -CCeEEEEEcCCC
Q 000961 471 -EDRVVIFDLQQR 482 (1208)
Q Consensus 471 -dg~v~lwdl~~~ 482 (1208)
...+.+.++..+
T Consensus 390 ~~~~L~~~~l~g~ 402 (419)
T PRK04043 390 NQSALGIIRLNYN 402 (419)
T ss_pred CcEEEEEEecCCC
Confidence 234666676443
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.77 E-value=3.1e-08 Score=113.79 Aligned_cols=241 Identities=17% Similarity=0.338 Sum_probs=167.5
Q ss_pred EEEEEEeC--CCCEEEEEecCCeEEEEECCC---CeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCC-e
Q 000961 12 VKGLSFHS--KRPWILASLHSGVIQLWDYRM---GTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMH-R 84 (1208)
Q Consensus 12 V~~lafsp--dg~~Lasg~~dg~I~iWd~~~---g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~-~ 84 (1208)
|-.+.||| ..++-++...+..-.+|++.. ...-..+.+|...|+.+-|+|+.+ .+++++.|..+..||+.+. .
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 55667776 345555566666677899753 344456679999999999999876 7899999999999999865 3
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEE
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVW 162 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vw 162 (1208)
.+.....-...-..|.|+-..+.+...+..+.|++||.+. +.++..+++|...|..+.|+..- ..+.+.+.||+|+.|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 4455544455677899998777777778888999999985 46788889999999999997643 578899999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEE--eCCCcEEE---------E
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG--ADDRQVKL---------W 231 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sg--s~dg~I~i---------w 231 (1208)
|......... .......+|....+.|-|.-.++- -.+..+.+ |
T Consensus 230 ~y~kSt~e~~--------------------------~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~ 283 (1081)
T KOG0309|consen 230 DYSKSTTESK--------------------------RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW 283 (1081)
T ss_pred cccccccccc--------------------------eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhh
Confidence 9875322110 111123444445555533322211 11123333 3
Q ss_pred ECCCCceeEEEeecCcCCCeEEEEEccCCC----------EEEEEeCCCcEEEEeCCC
Q 000961 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQD----------IIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 232 d~~~~~~~~~~~l~~h~~~V~~l~~sp~g~----------~l~sgs~dg~I~vwd~~~ 279 (1208)
+..+.. .++.++.||...|....|-..+. .|++=+.|.++++|-+.+
T Consensus 284 n~~~~~-~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 284 NVFDLN-TPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCC-cceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 333322 24889999999988777754322 689999999999998753
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=2.1e-07 Score=97.10 Aligned_cols=255 Identities=19% Similarity=0.330 Sum_probs=170.6
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-----eEEEEecccc------------cCEEEEEEEcCCC--EEEE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-----TLIDRFDEHD------------GPVRGVHFHKSQP--LFVS 68 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g-----~~i~~l~~h~------------~~V~~l~fsp~~~--~Las 68 (1208)
....|+++.|...|.||++|...|.|.+|.-... +....|++|. ..|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999998999999974432 2233455554 4588899976543 5777
Q ss_pred EECCCeEEEEECCCCe-------------------EE-----------------------EEE-ccCCCCEEEEEEcCCC
Q 000961 69 GGDDYKIKVWNYKMHR-------------------CL-----------------------FTL-LGHLDYIRTVQFHHEY 105 (1208)
Q Consensus 69 gs~Dg~I~vWd~~~~~-------------------~~-----------------------~~l-~~h~~~I~~v~fs~d~ 105 (1208)
.+.|.+|++|.+.... ++ +.. ..|..-|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999864320 00 001 3466778899999999
Q ss_pred CEEEEEECCCcEEEEECCCCe---EEEEEecCC-----CCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCC
Q 000961 106 PWIVSASDDQTIRIWNWQSRT---CISVLTGHN-----HYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPAD 176 (1208)
Q Consensus 106 ~~l~s~s~Dg~I~iwd~~s~~---~i~~l~~h~-----~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~ 176 (1208)
..++++ +|-.|.+|++.-.. .+.-++.|+ .-|++..|+|.. +.+...+..|.|++-|++.......
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn---- 259 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN---- 259 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC----
Confidence 888776 47789999986322 222334443 358899999975 6677778899999999974221100
Q ss_pred cceeecccccccc-ccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcC-------
Q 000961 177 DILRLSQMNTDLF-GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM------- 248 (1208)
Q Consensus 177 ~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~------- 248 (1208)
...++ ...++.-...+.+-.+.|..+.|+++|+++++-+ --+|++||.+..+. ++.+..-|.
T Consensus 260 --------~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~-pikTi~~h~~l~~~l~ 329 (460)
T COG5170 260 --------SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN-PIKTIPMHCDLMDELN 329 (460)
T ss_pred --------chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC-CceeechHHHHHHHHH
Confidence 00111 0112222223445567788999999999888765 46799999987654 255554332
Q ss_pred -----CCe---EEEEEccCCCEEEEEeCCCcEEEEeC
Q 000961 249 -----NNV---SCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 249 -----~~V---~~l~~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
..| ..+.|+.+.+.+++|+.....-+|-.
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 24788888889999988877777753
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=1.3e-07 Score=102.89 Aligned_cols=159 Identities=22% Similarity=0.325 Sum_probs=117.5
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCe----EEEEecc--cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGT----LIDRFDE--HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~----~i~~l~~--h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1208)
.+..+..+|++++||++..+....++++.... ++..... ....++.+..+.........++.+.+.+|+...+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44556788999999999888887777775443 2333222 22233333333333333345677888888887644
Q ss_pred EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEE
Q 000961 85 CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 85 ~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwd 163 (1208)
+ ..+.||-.-+..++|+||+++|+++..|..|+|-....--.+..+ -||...|..++..++ ..|++++.|++|++||
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 4 445689999999999999999999999999999888765555555 579999999999865 5699999999999999
Q ss_pred CCCCcccc
Q 000961 164 IGALRKKT 171 (1208)
Q Consensus 164 l~~~~~~~ 171 (1208)
+.+++...
T Consensus 222 ~~sgk~L~ 229 (390)
T KOG3914|consen 222 ITSGKLLD 229 (390)
T ss_pred cccCCccc
Confidence 99987654
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.70 E-value=3.9e-05 Score=84.49 Aligned_cols=218 Identities=13% Similarity=0.021 Sum_probs=144.9
Q ss_pred EEEEEc-CCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEc-CCCCEEEEEECCCcEEEEECCCCeEEEEEec
Q 000961 56 GVHFHK-SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFH-HEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (1208)
Q Consensus 56 ~l~fsp-~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs-~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~ 133 (1208)
++.|.+ ++.++++--..+.|..|+..++.....-. .. ...+++. +++ .++.+... .+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 578998 66667776678999999998876543222 22 6777777 564 56666654 456669998866544432
Q ss_pred -----CCCCEEEEEEeeCCCEEEEEECC--------CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 134 -----HNHYVMCASFHPKEDLVVSASLD--------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 134 -----h~~~V~~l~~~p~~~~l~s~s~D--------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
.......+++.|+|++.++.... |.|..++.. .+ +. ..
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---------------------------~~-~~ 129 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---------------------------VT-VV 129 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---------------------------EE-EE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---------------------------EE-EE
Confidence 34567899999999966665543 445555554 11 11 12
Q ss_pred eccCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCce--eE---EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000961 201 EGHDRGVNWAAFHPTLPLIV-SGADDRQVKLWRMNETKA--WE---VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~-sgs~dg~I~iwd~~~~~~--~~---~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~v 274 (1208)
...-...+.++|+|+++.|+ +-+..+.|..+++..... .. ...+....+....+++..+|++.++....+.|.+
T Consensus 130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence 22345568999999998776 556678898888864321 11 2222333335789999999998888888999999
Q ss_pred EeCCCCeeEEEeecCCCCEEEEEEe-CCCCEEEEE
Q 000961 275 WDVTKRTGVQTFRREHDRFWILASH-PEMNLLAAG 308 (1208)
Q Consensus 275 wd~~~~~~~~~~~~~~~~i~~la~s-p~~~~la~g 308 (1208)
+|.. |+.+..+......+++++|. ++.+.|.+.
T Consensus 210 ~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred ECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 9977 88888888776789999994 565555443
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=5.7e-05 Score=83.14 Aligned_cols=223 Identities=12% Similarity=0.065 Sum_probs=144.1
Q ss_pred EEEEeC-CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEE-cCCCEEEEEECCCeEEEEECCCCeEEEEEcc
Q 000961 14 GLSFHS-KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH-KSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (1208)
Q Consensus 14 ~lafsp-dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fs-p~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~ 91 (1208)
+++|.+ ++.++++-...+.|..|+..+++... +.... ..++++. +++ .|+.+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 688998 66666666678999999988876543 22122 6778888 564 55555554 455669988865444332
Q ss_pred -----CCCCEEEEEEcCCCCEEEEEECC--------CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEE-EEECCC
Q 000961 92 -----HLDYIRTVQFHHEYPWIVSASDD--------QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV-SASLDQ 157 (1208)
Q Consensus 92 -----h~~~I~~v~fs~d~~~l~s~s~D--------g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~-s~s~Dg 157 (1208)
.......+++.++|...++.... |.|..++.. ++...... .-.....++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34567889999999977766543 557777876 55444443 345678999999998776 556678
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
.|..+++........ .......+....+..-.+++..+|++.++....+.|.+++.. ++
T Consensus 157 ~i~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 157 RIWRFDLDADGGELS--------------------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEEEEEETTTCCEE--------------------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred eeEEEecccccccee--------------------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 888888854221000 000111222222347789999999988888889999999988 55
Q ss_pred eeEEEeecCcCCCeEEEEEc-cCCCEEEEE
Q 000961 238 AWEVDTLRGHMNNVSCVMFH-AKQDIIVSN 266 (1208)
Q Consensus 238 ~~~~~~l~~h~~~V~~l~~s-p~g~~l~sg 266 (1208)
. +..+......+++++|. ++.+.|...
T Consensus 216 ~--~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 216 L--LREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp E--EEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred E--EEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 5 33333334589999994 665655544
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.65 E-value=4.6e-05 Score=89.81 Aligned_cols=264 Identities=9% Similarity=0.029 Sum_probs=156.0
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEE
Q 000961 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1208)
Q Consensus 63 ~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~ 142 (1208)
+..+++++.+|.|..+|..+|+.+............... ++..++.++.++.+..+|..+|+.+....... .+.+.-
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 567888888999999999999988776544332222322 45678888899999999999999887765332 222211
Q ss_pred EeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEE
Q 000961 143 FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG 222 (1208)
Q Consensus 143 ~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sg 222 (1208)
.. .++.++.++.+|.|..||..+++..-...... ..........+ ... + ..++++
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~------------------~~~~~~~~~sp----~~~-~-~~v~~~ 196 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVT------------------PALTLRGSASP----VIA-D-GGVLVG 196 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCC------------------CceeecCCCCC----EEE-C-CEEEEE
Confidence 11 24577888889999999998766432111000 00000001111 111 2 367778
Q ss_pred eCCCcEEEEECCCCceeEEEeec-CcC-CC------e-EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCC--
Q 000961 223 ADDRQVKLWRMNETKAWEVDTLR-GHM-NN------V-SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-- 291 (1208)
Q Consensus 223 s~dg~I~iwd~~~~~~~~~~~l~-~h~-~~------V-~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-- 291 (1208)
..+|.+..+|..+++..-..... ... .. + .+..+ .+..+++++.+|.++.||..+++.+........
T Consensus 197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 274 (377)
T TIGR03300 197 FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQG 274 (377)
T ss_pred CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccC
Confidence 88899999998887642111111 000 00 0 11112 255788888899999999999987766542111
Q ss_pred CE----EEEEEeCCCCEEEEEECCCeeeEeeCC-Cc---ceEEecCCEEEEE-eCCeEEEEEccCCcceeeEee
Q 000961 292 RF----WILASHPEMNLLAAGHDSGMIVFKLER-ER---PAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPI 356 (1208)
Q Consensus 292 ~i----~~la~sp~~~~la~g~~~gi~v~~l~~-~~---~~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~ 356 (1208)
.. .....+.++.+.+.-..+|-.+|+... .. ......++.+++. .++.+.++|..+++.+....+
T Consensus 275 p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 275 PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 00 001112333333333344445565422 11 1223456778777 899999999999988665544
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.9e-07 Score=99.10 Aligned_cols=266 Identities=16% Similarity=0.122 Sum_probs=181.2
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC--C-eEEEEecccccCEEEEEEEcCCCEEEEEEC-CCeEEEEECCC
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--G-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-DYKIKVWNYKM 82 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~--g-~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-Dg~I~vWd~~~ 82 (1208)
-|.+.|+.+.-+ ..+++.+++.||.++.|.-.. | +.+..+..|-+.|.+++.+-++.++.|++. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 377777776655 456899999999999998432 2 445667789999999999999999999887 99999999987
Q ss_pred CeEEEEEcc--CCCCEEEEEEcCCCC--EEE-EEECCCcEEEEECCCCe--EEEEEecCCCCEEEEEEeeCCCEEEEEEC
Q 000961 83 HRCLFTLLG--HLDYIRTVQFHHEYP--WIV-SASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASFHPKEDLVVSASL 155 (1208)
Q Consensus 83 ~~~~~~l~~--h~~~I~~v~fs~d~~--~l~-s~s~Dg~I~iwd~~s~~--~i~~l~~h~~~V~~l~~~p~~~~l~s~s~ 155 (1208)
-..+.-+.- -.+.+ +...++... .|+ +.-.++.+.|+|-.... ....-.-|..+|.++.++|.++.+++...
T Consensus 86 ~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 554432221 11211 111222211 233 33457899999976543 23344569999999999999999999999
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~ 235 (1208)
.|.|.-|.....-+. |. ....++-....-.+.+........++.|+|+|..+.+-+.|..|++++..+
T Consensus 165 ~gmVEyWs~e~~~qf---Pr---------~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQF---PR---------TNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred cceeEeecCCCcccC---cc---------ccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence 999999998741110 00 001111111111222333445678899999999999999999999999988
Q ss_pred CceeEEE------------------------------eecCcC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 000961 236 TKAWEVD------------------------------TLRGHM-NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (1208)
Q Consensus 236 ~~~~~~~------------------------------~l~~h~-~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~ 284 (1208)
++..... .+..|. ..-+.+.|...|++|+.++-=| |+|.++.+++..+
T Consensus 233 GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 233 GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 7642100 001122 1234678888899999988776 8999999988887
Q ss_pred Eee
Q 000961 285 TFR 287 (1208)
Q Consensus 285 ~~~ 287 (1208)
.+-
T Consensus 312 i~g 314 (558)
T KOG0882|consen 312 ILG 314 (558)
T ss_pred Eec
Confidence 664
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=2e-08 Score=117.11 Aligned_cols=259 Identities=15% Similarity=0.267 Sum_probs=174.9
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC--CeEEEEEC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWNY 80 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D--g~I~vWd~ 80 (1208)
+.|..|....+|++|+-+.++|++|+..|.|+++++.+|........|.++|+.+.=+.+|..+.+.+.- -...+|+.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 4678899999999999999999999999999999999999999999999999999999999977765432 35779998
Q ss_pred CC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-ec---CCCCEEEEEEeeCCCEEEEEEC
Q 000961 81 KM-HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TG---HNHYVMCASFHPKEDLVVSASL 155 (1208)
Q Consensus 81 ~~-~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~~---h~~~V~~l~~~p~~~~l~s~s~ 155 (1208)
.+ +...+++. .-.++.|+.....-+.|+......+||++++..+.++ .+ .+-.-.++.|+|+.++++-
T Consensus 1175 ~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln--- 1247 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN--- 1247 (1516)
T ss_pred ccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---
Confidence 64 44444443 3467888877665555665667899999999877663 21 2223368899999887773
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~ 235 (1208)
|| .+||.+..+...... .+. .-..-.|||.|..++.-+. |||+++
T Consensus 1248 dG--vLWDvR~~~aIh~FD------------------------~ft----~~~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFD------------------------QFT----DYGGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred Cc--eeeeeccHHHHhhhh------------------------hhe----ecccccccCCCceEEeech-----hhhhHH
Confidence 55 489998754332111 011 0112369999999988774 899998
Q ss_pred CceeEEEeecCcCCCeEEEEEccCCCEEEEEe--CC---------------CcEEEEeCCCCeeEEEeecCCCCEEEEEE
Q 000961 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS--ED---------------KSIRVWDVTKRTGVQTFRREHDRFWILAS 298 (1208)
Q Consensus 236 ~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs--~d---------------g~I~vwd~~~~~~~~~~~~~~~~i~~la~ 298 (1208)
.+. ++..+. -.-..+.|+..|+.+...- .| ...|-+|......+.++... ..+..++.
T Consensus 1293 F~l--Lh~VP~--Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct 1367 (1516)
T KOG1832|consen 1293 FKL--LHSVPS--LDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLCT 1367 (1516)
T ss_pred HHH--HhcCcc--ccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhhc
Confidence 775 333322 1234677777777554332 00 12334444444444444422 23455556
Q ss_pred eCCCCEEEEE
Q 000961 299 HPEMNLLAAG 308 (1208)
Q Consensus 299 sp~~~~la~g 308 (1208)
+|...++++-
T Consensus 1368 ~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1368 EPTDSFLGVI 1377 (1516)
T ss_pred CCccceEEEE
Confidence 6665555543
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.58 E-value=3.8e-05 Score=83.64 Aligned_cols=236 Identities=14% Similarity=0.114 Sum_probs=156.7
Q ss_pred CCEEEEEEeC-CCCEEEEEecCC-eEEEEECCCCeEEEEecccccCE--EEEEEEcCCCEEEEEE-----CCCeEEEEEC
Q 000961 10 NRVKGLSFHS-KRPWILASLHSG-VIQLWDYRMGTLIDRFDEHDGPV--RGVHFHKSQPLFVSGG-----DDYKIKVWNY 80 (1208)
Q Consensus 10 ~~V~~lafsp-dg~~Lasg~~dg-~I~iWd~~~g~~i~~l~~h~~~V--~~l~fsp~~~~Lasgs-----~Dg~I~vWd~ 80 (1208)
.+...++.+| ++..++.+-.-| ...+||..+++....+....+.- -.-.||+||++|.+.- ..|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4567899999 555666666655 48899999999988775444332 1367999999999863 4589999999
Q ss_pred C-CCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC------------------CCcEEEEECCCCeEEEEEe----cCCCC
Q 000961 81 K-MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD------------------DQTIRIWNWQSRTCISVLT----GHNHY 137 (1208)
Q Consensus 81 ~-~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~------------------Dg~I~iwd~~s~~~i~~l~----~h~~~ 137 (1208)
. +-+.+..+..|.-.-..+.+.||++.|+++.. +-++...|..+|+.+.... .|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 67888888888777888999999988887642 2356667778888877643 37778
Q ss_pred EEEEEEeeCCCEEEEEECCCe-------EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEE
Q 000961 138 VMCASFHPKEDLVVSASLDQT-------VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210 (1208)
Q Consensus 138 V~~l~~~p~~~~l~s~s~Dg~-------V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 210 (1208)
+..+++.++|..++..-..|. |-+++....- . .+...+ -....-.+.+-++
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-----------~-------~~~~p~----~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-----------R-------LLPAPE----EQWRRLNGYIGSI 222 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-----------e-------eccCCh----HHHHhhCCceEEE
Confidence 999999998865554433221 2222221100 0 000000 0112234678899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000961 211 AFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIR 273 (1208)
Q Consensus 211 ~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~ 273 (1208)
++++++.++++.+ ..+.+.+||..++.......+ ..+..++-.+++ ++++.+ .|.+.
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc----CceeeeeecCCc-eEEeCC-CccEE
Confidence 9999998775555 678899999999986322222 346667766666 555544 44433
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=3.5e-05 Score=84.35 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=142.5
Q ss_pred cCCeEEEEECCCCeEEEEeccc--ccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC
Q 000961 29 HSGVIQLWDYRMGTLIDRFDEH--DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP 106 (1208)
Q Consensus 29 ~dg~I~iWd~~~g~~i~~l~~h--~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~ 106 (1208)
.+|+|..||..+|+.+-+..-- .....+. ..+++..+++++.++.|..||..+|+.+.+... ...+.... ..++.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 3689999999999999877431 1112211 334666788888999999999999999888764 22211111 22345
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEE-ecCC---CCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeec
Q 000961 107 WIVSASDDQTIRIWNWQSRTCISVL-TGHN---HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182 (1208)
Q Consensus 107 ~l~s~s~Dg~I~iwd~~s~~~i~~l-~~h~---~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~ 182 (1208)
.+++++.++.|+.+|..+|+.+... .... ...........++.++++..++.|..+|..+++.....+....
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~---- 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP---- 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT----
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC----
Confidence 6777778899999999999999884 3221 1122333334478899999999999999988765332111000
Q ss_pred cccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCE
Q 000961 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDI 262 (1208)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~ 262 (1208)
.... ... ....+..-....++ .+..++.++.+.-+|..+++. +.... ...+.. ...+++..
T Consensus 154 ----------~~~~--~~~-~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~--~w~~~--~~~~~~-~~~~~~~~ 214 (238)
T PF13360_consen 154 ----------RGSS--PIS-SFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEK--LWSKP--ISGIYS-LPSVDGGT 214 (238)
T ss_dssp -----------SS----EE-EETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEE--EEEEC--SS-ECE-CEECCCTE
T ss_pred ----------CCCc--cee-eecccccceEEECC-EEEEEcCCCeEEEEECCCCCE--EEEec--CCCccC-CceeeCCE
Confidence 0000 000 00112222222344 677777777544449999884 22222 222222 13467788
Q ss_pred EEEEeCCCcEEEEeCCCCeeEEE
Q 000961 263 IVSNSEDKSIRVWDVTKRTGVQT 285 (1208)
Q Consensus 263 l~sgs~dg~I~vwd~~~~~~~~~ 285 (1208)
+++++.++.|..||+.+++.+.+
T Consensus 215 l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 215 LYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCEEEEEECCCCCEEeE
Confidence 88888999999999999987653
No 310
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.55 E-value=5.4e-07 Score=98.18 Aligned_cols=156 Identities=20% Similarity=0.282 Sum_probs=111.5
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECCCCe----EEEEEccCCCCEEEEEEcCCCCEEEE---EECCCcEEEEECCCCe
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR----CLFTLLGHLDYIRTVQFHHEYPWIVS---ASDDQTIRIWNWQSRT 126 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~----~~~~l~~h~~~I~~v~fs~d~~~l~s---~s~Dg~I~iwd~~s~~ 126 (1208)
+..+..++.++++|++..+....++++.... ++.... -...-+++.|..+...... +++...+.+|+...+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 4456678899999999888887777775433 222222 1222334444444443333 4455667777766644
Q ss_pred EEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCC
Q 000961 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (1208)
Q Consensus 127 ~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 206 (1208)
+ ..+-||-+.++.++|+||+++|+++..|..||+-....... +....-||..-
T Consensus 144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--------------------------IesfclGH~eF 196 (390)
T KOG3914|consen 144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--------------------------IESFCLGHKEF 196 (390)
T ss_pred c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--------------------------hhhhccccHhh
Confidence 4 34457999999999999999999999999999987654221 12245689999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 207 V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|..++.-++. .|++|+.|++|++||+.+++.
T Consensus 197 VS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 197 VSTISLTDNY-LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeeeeccCc-eeeecCCCCcEEEEecccCCc
Confidence 9999998875 599999999999999999987
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.55 E-value=6.1e-05 Score=82.08 Aligned_cols=252 Identities=13% Similarity=0.133 Sum_probs=154.5
Q ss_pred EEEEEcC-CCCEEEEEeCCCc-EEEEECCCCceeEEEeecCcCCC--eEEEEEccCCCEEEEEe-----CCCcEEEEeCC
Q 000961 208 NWAAFHP-TLPLIVSGADDRQ-VKLWRMNETKAWEVDTLRGHMNN--VSCVMFHAKQDIIVSNS-----EDKSIRVWDVT 278 (1208)
Q Consensus 208 ~~l~~sp-~g~~L~sgs~dg~-I~iwd~~~~~~~~~~~l~~h~~~--V~~l~~sp~g~~l~sgs-----~dg~I~vwd~~ 278 (1208)
..++.+| ....++.+-.-|. ..+||..+++. ...+....+. .-.-.||+||++|++.- ..|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3577888 4455666666654 67899988886 3333222221 22468999999999863 35789999998
Q ss_pred -CCeeEEEeecCCCCEEEEEEeCCCCEEEEEECC-------CeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc
Q 000961 279 -KRTGVQTFRREHDRFWILASHPEMNLLAAGHDS-------GMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (1208)
Q Consensus 279 -~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~-------gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~ 350 (1208)
+.+.+..+..+.-....+.+.||+..|+++..+ |-...++++ .+..+...|..+|+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t---------------M~psL~~ld~~sG~l 150 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT---------------MQPSLVYLDARSGAL 150 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh---------------cCCceEEEecCCCce
Confidence 667788888777777889999999877776422 111122222 345566677777777
Q ss_pred eeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEE
Q 000961 351 TQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLD 430 (1208)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~ 430 (1208)
+....+...-+ ...++.+++.++|..+.. .. |. +..... --+++.-
T Consensus 151 l~q~~Lp~~~~---~lSiRHLa~~~~G~V~~a-~Q--------~q--------------g~~~~~--------~PLva~~ 196 (305)
T PF07433_consen 151 LEQVELPPDLH---QLSIRHLAVDGDGTVAFA-MQ--------YQ--------------GDPGDA--------PPLVALH 196 (305)
T ss_pred eeeeecCcccc---ccceeeEEecCCCcEEEE-Ee--------cC--------------CCCCcc--------CCeEEEE
Confidence 66655543222 237899999998873322 11 01 000000 0123333
Q ss_pred cCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEEEE-e--CCeEEEEEcCCCeEEEEEeCCCeeEEEECCCCCEEEE
Q 000961 431 KSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCR-A--EDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVAL 507 (1208)
Q Consensus 431 ~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las-~--dg~v~lwdl~~~~~l~~~~~~~v~~v~ws~dg~~la~ 507 (1208)
..++.+............+ ...+-+|+++++|.+++. + .+.+.+||..+++.+.......+..++..+++ ++++
T Consensus 197 ~~g~~~~~~~~p~~~~~~l--~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 197 RRGGALRLLPAPEEQWRRL--NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVS 273 (305)
T ss_pred cCCCcceeccCChHHHHhh--CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEe
Confidence 3233344444443222222 236788889988877744 3 58889999999988888887777777777777 4444
Q ss_pred EeCCeE
Q 000961 508 LSKHAI 513 (1208)
Q Consensus 508 ~s~~~i 513 (1208)
.+...+
T Consensus 274 sG~G~~ 279 (305)
T PF07433_consen 274 SGQGQL 279 (305)
T ss_pred CCCccE
Confidence 433333
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=7.8e-08 Score=112.36 Aligned_cols=224 Identities=14% Similarity=0.155 Sum_probs=160.9
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC--cEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ--TIRI 119 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg--~I~i 119 (1208)
+...+|..|+...+|++|+-+.+.|++|+..|.|+++++.+|.......+|...|+.+.-+.+|..+++.+... -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34566778999999999999999999999999999999999999999999999999999999998777655433 4678
Q ss_pred EECCC-CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 120 WNWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 120 wd~~s-~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
|+..+ +...+++.. -.++.|+.....-+.|+......+||+.++......-.
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----------------------- 1224 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT----------------------- 1224 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC-----------------------
Confidence 99863 444444442 35678876654455566666789999998665432110
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
...+....-+++.|+|+..+++- || .+||.+..+. ++.+...+..+ .-.|||+|.-++..++ |||++
T Consensus 1225 ~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~a--Ih~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~R 1291 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEA--IHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMR 1291 (1516)
T ss_pred cchhhhhhccccccCCCcceEee---Cc--eeeeeccHHH--Hhhhhhheecc-cccccCCCceEEeech-----hhhhH
Confidence 01112222378899999877663 55 4899988765 55555444332 3479999999998764 89999
Q ss_pred CCeeEEEeecCCCCEEEEEEeCCCCEEEE
Q 000961 279 KRTGVQTFRREHDRFWILASHPEMNLLAA 307 (1208)
Q Consensus 279 ~~~~~~~~~~~~~~i~~la~sp~~~~la~ 307 (1208)
+.+.++....-. -..+.|+..|+.+.+
T Consensus 1292 TF~lLh~VP~Ld--qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1292 TFKLLHSVPSLD--QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred HHHHHhcCcccc--ceEEEeccCccchhh
Confidence 888777654322 246777777776544
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=4.9e-06 Score=98.03 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=112.4
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
+.++|+++| ++.++.|+++|.|++.+. .|.. .+...|... ..+|.+++||+.||+|.|-.+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~-~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTC-QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEec-CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677777 678999999999999995 4444 333345544 678999999999999999999888777666
Q ss_pred ccCCCCEEEEEEcCC-----CCEEEEEECCCcEEEEECC--CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 90 LGHLDYIRTVQFHHE-----YPWIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d-----~~~l~s~s~Dg~I~iwd~~--s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
. ...++.+++++|+ .+.+++|+.-| +.++.-. ..+....+....++|.++.|. |++++-++.+| |+||
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 5 4568999999998 45899999888 7776422 222222456667899999997 78999998766 8999
Q ss_pred ECCCCccccc
Q 000961 163 DIGALRKKTV 172 (1208)
Q Consensus 163 dl~~~~~~~~ 172 (1208)
|+...+....
T Consensus 185 d~~~~~~l~~ 194 (846)
T KOG2066|consen 185 DTPTRQRLTN 194 (846)
T ss_pred eccccceeec
Confidence 9988665443
No 314
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.42 E-value=0.00014 Score=86.06 Aligned_cols=261 Identities=7% Similarity=-0.033 Sum_probs=145.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEeccccc----------CEE-EEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE
Q 000961 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDG----------PVR-GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~----------~V~-~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1208)
.+..+.+++.+|.+.-+|..+|+.+-+.+.... .+. .+.. .+..++.++.+|.+..+|.++|+.+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 356788888899999999999998876542220 000 0111 345677788899999999999998877
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEE-EEEEee--CCCEEEEEECCCeEEEEECC
Q 000961 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVM-CASFHP--KEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~-~l~~~p--~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
.........+.... +..++.++.++.+..+|..+|+.+.........+. ...-+| .+..++.++.+|.+..+|..
T Consensus 146 ~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 146 TKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred ccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 65432211111121 34677788899999999999999887753211100 000011 13467778889999988887
Q ss_pred CCccccccCCCcce------------e--eccccccccccccceEEEEEeccCCCeEEE-EE------cCCCCEEEEEeC
Q 000961 166 ALRKKTVSPADDIL------------R--LSQMNTDLFGGVDAVVKYVLEGHDRGVNWA-AF------HPTLPLIVSGAD 224 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~------sp~g~~L~sgs~ 224 (1208)
+++..-..+..... . ....+.......+.. ...+...++.+.+- .+ ...+..+++++.
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQ 302 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCCCccCcEEECCEEEEEcC
Confidence 76643321110000 0 000000011111111 11122222222110 00 113456777778
Q ss_pred CCcEEEEECCCCceeEEEeecCc-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC
Q 000961 225 DRQVKLWRMNETKAWEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~l~~h-~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
+|.+..+|..+++. +-..... .....+... .+..++.++.+|.+.+.|..+|+.+...+..
T Consensus 303 ~g~l~ald~~tG~~--~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 303 NDRVYALDTRGGVE--LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred CCeEEEEECCCCcE--EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 88888888887764 2111110 111122222 2556778888899999998888887766543
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.42 E-value=0.0041 Score=72.41 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=68.4
Q ss_pred EEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEEEEe
Q 000961 391 YELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA 470 (1208)
Q Consensus 391 v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las~ 470 (1208)
..+|++............-.....+.+++++|+...++.|+.||+|.+||...+.....+....++.++|+|+|.+++++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEE
Confidence 34667665443322212334566788999999999999999999999999986666666655578899999999998775
Q ss_pred --CCeEEEEEcCCC
Q 000961 471 --EDRVVIFDLQQR 482 (1208)
Q Consensus 471 --dg~v~lwdl~~~ 482 (1208)
.|.+.+||+.-.
T Consensus 318 s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 318 SEQGELQCFDMALS 331 (545)
T ss_pred cCCceEEEEEeecC
Confidence 489999998644
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.40 E-value=0.00022 Score=75.47 Aligned_cols=146 Identities=13% Similarity=0.148 Sum_probs=89.9
Q ss_pred EEEEcCCCEEEEEECCCeEEEEECCCC--eEEEEEc---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000961 57 VHFHKSQPLFVSGGDDYKIKVWNYKMH--RCLFTLL---GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131 (1208)
Q Consensus 57 l~fsp~~~~Lasgs~Dg~I~vWd~~~~--~~~~~l~---~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l 131 (1208)
++.+++|++||+--+ ..|.|-..++. ..+.+.. .....=+.++||||+..||.+...|+|+++|+... .+..+
T Consensus 3 ~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEEec-cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 456778888777654 46666554431 1222222 22335688999999999999999999999998753 33343
Q ss_pred ec-------CCCCEEEEEEeeCC------CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 132 TG-------HNHYVMCASFHPKE------DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 132 ~~-------h~~~V~~l~~~p~~------~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
.. -...|..+.|.+.. ..|++.+.+|.++-|-+..+..... .....+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y--------------------~e~hsf 140 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY--------------------QENHSF 140 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc--------------------eeeEEE
Confidence 32 12456666665432 2456666677777776533211100 011122
Q ss_pred EEe-ccCCCeEEEEEcCCCCEEEEEeC
Q 000961 199 VLE-GHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 199 ~~~-~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
.+. .+..+|+++.++|..++|++|+.
T Consensus 141 sf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EecccCCCceeEEEEcCCCCEEEEecc
Confidence 333 34779999999999998888874
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=0.00021 Score=73.69 Aligned_cols=149 Identities=17% Similarity=0.095 Sum_probs=94.9
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 000961 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (1208)
Q Consensus 147 ~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg 226 (1208)
..+++.|+..+.+.--|..++...-.. . -...+.+-+.- -|++++.|+..|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~-------------------------i---lg~RiE~sa~v-vgdfVV~GCy~g 73 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA-------------------------I---LGVRIECSAIV-VGDFVVLGCYSG 73 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh-------------------------h---hCceeeeeeEE-ECCEEEEEEccC
Confidence 367777888888877777664432110 0 11122221111 467899999999
Q ss_pred cEEEEECCCCce-eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeC-CCCE
Q 000961 227 QVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP-EMNL 304 (1208)
Q Consensus 227 ~I~iwd~~~~~~-~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp-~~~~ 304 (1208)
.+++.+.+++.. |....+..-. ......+++.+|..|+.|++.+..|..+..++...+...+.+.+-+..| ++.+
T Consensus 74 ~lYfl~~~tGs~~w~f~~~~~vk---~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sl 150 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVILETVK---VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSL 150 (354)
T ss_pred cEEEEEecchhheeeeeehhhhc---cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceE
Confidence 999999999854 3333222111 2345577899999999999999999999999888776666555555565 4444
Q ss_pred EEEEECCC-----------eeeEeeCCCcceEEe
Q 000961 305 LAAGHDSG-----------MIVFKLERERPAFAV 327 (1208)
Q Consensus 305 la~g~~~g-----------i~v~~l~~~~~~~s~ 327 (1208)
.++...+. ..+|..+...|.|+.
T Consensus 151 y~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~s 184 (354)
T KOG4649|consen 151 YAAITAGAVLAVTKNPYSSTEFWAATRFGPIFAS 184 (354)
T ss_pred EEEeccceEEEEccCCCCcceehhhhcCCccccC
Confidence 44333222 346777777775543
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.3e-06 Score=93.95 Aligned_cols=211 Identities=15% Similarity=0.124 Sum_probs=151.3
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC--C-eEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEECCC
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM--H-RCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQS 124 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~--~-~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg~I~iwd~~s 124 (1208)
-|...|+.+.-+ ..+++.+++-||.++.|.-.. + +.+..+..|...|.+++.+-++-.+.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477777776543 456899999999999997543 1 334455778899999999999988888787 99999999987
Q ss_pred CeEEEEEec--CCCCEEEEEEeeCC---CEEE-EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 125 RTCISVLTG--HNHYVMCASFHPKE---DLVV-SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 125 ~~~i~~l~~--h~~~V~~l~~~p~~---~~l~-s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
-..+..++- -.+.+.+ +...| ..|+ +.-.+|.+.++|-...... ..+
T Consensus 86 ~DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-------------------------~~~ 138 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-------------------------DGY 138 (558)
T ss_pred cchhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCc-------------------------cce
Confidence 665543331 2222222 12223 1333 3346788999986553211 223
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------Cc-eeE------EEeecCcCCCeEEEEEccCCCEEEE
Q 000961 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE------TK-AWE------VDTLRGHMNNVSCVMFHAKQDIIVS 265 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~------~~-~~~------~~~l~~h~~~V~~l~~sp~g~~l~s 265 (1208)
.-.-|..+|..+.+++.+..+++....|.|.-|.... .. .+. +..+.......+++.|+|++..+.+
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 4456899999999999999999999999999998874 10 010 1122334567889999999999999
Q ss_pred EeCCCcEEEEeCCCCeeEEEee
Q 000961 266 NSEDKSIRVWDVTKRTGVQTFR 287 (1208)
Q Consensus 266 gs~dg~I~vwd~~~~~~~~~~~ 287 (1208)
-+.|..|++++..+++.++.+.
T Consensus 219 l~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cCcccEEEEEEeccchhhhhhh
Confidence 9999999999999998877654
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.36 E-value=8.2e-06 Score=85.47 Aligned_cols=264 Identities=12% Similarity=0.199 Sum_probs=145.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE---EEeecCcC------------CCeEEEEEccCC--CEEEEE
Q 000961 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE---VDTLRGHM------------NNVSCVMFHAKQ--DIIVSN 266 (1208)
Q Consensus 204 ~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~---~~~l~~h~------------~~V~~l~~sp~g--~~l~sg 266 (1208)
...|+++.|...|.++++|...|.|.+|.-......+ ...+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999766543111 22344443 246677787643 467778
Q ss_pred eCCCcEEEEeCCCCeeEEE--------eecC-CCCEEEE------EEeCCCCEEEEEECCCee--eEeeCCCcceEEecC
Q 000961 267 SEDKSIRVWDVTKRTGVQT--------FRRE-HDRFWIL------ASHPEMNLLAAGHDSGMI--VFKLERERPAFAVSG 329 (1208)
Q Consensus 267 s~dg~I~vwd~~~~~~~~~--------~~~~-~~~i~~l------a~sp~~~~la~g~~~gi~--v~~l~~~~~~~s~~~ 329 (1208)
+.|++|++|.+........ +... .+++++. ..+....+++ .....+. .....-....+..+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia-a~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA-AKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE-eccceeccccceeEeeeeeecCch
Confidence 8899999998764321100 0000 0111110 0111111111 1111100 000000001222233
Q ss_pred CEEEEEeCCeEEEEEccC-CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCC----CC
Q 000961 330 DSLFYAKDRFLRYYEFST-QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIG----RG 404 (1208)
Q Consensus 330 ~~L~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~----~~ 404 (1208)
..++.+.+-.|.+|++.- .....+..++......+..-|++..|+|....++..+ +..|.|++-++.....- ..
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS-sSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS-SSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe-cCCCcEEehhhhhhhhccCchhh
Confidence 444455666777777654 2223333333222111122578889999877665444 36689999887632210 00
Q ss_pred ---------cccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC--CceeeeecCCc-------------c---eEE
Q 000961 405 ---------DSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK--NEVVKKSILPI-------------A---ADA 457 (1208)
Q Consensus 405 ---------~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~--~~~~~~l~~~~-------------~---v~~ 457 (1208)
..-+......|..+.|+++||++++-+ --+|.|||.. ..+++++..|. . --.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 001223345678899999999998876 5789999998 56788876543 1 234
Q ss_pred EEEeCCccEEEEe
Q 000961 458 IFYAGTGNLLCRA 470 (1208)
Q Consensus 458 i~~s~dg~~Las~ 470 (1208)
+.||.|.+.+.++
T Consensus 343 isfSgd~~~v~sg 355 (460)
T COG5170 343 ISFSGDDKHVLSG 355 (460)
T ss_pred EEecCCccccccc
Confidence 6677776666553
No 320
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.31 E-value=5.6e-06 Score=85.06 Aligned_cols=150 Identities=17% Similarity=0.302 Sum_probs=98.5
Q ss_pred EEeCCCCEEEEEecCCeEEEEECCCCeE-EEEec-ccccCEEEEEEEcCCCEEEEEE-----CCCeEEEEECCCCeEEEE
Q 000961 16 SFHSKRPWILASLHSGVIQLWDYRMGTL-IDRFD-EHDGPVRGVHFHKSQPLFVSGG-----DDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 16 afspdg~~Lasg~~dg~I~iWd~~~g~~-i~~l~-~h~~~V~~l~fsp~~~~Lasgs-----~Dg~I~vWd~~~~~~~~~ 88 (1208)
+.+--++.+++++.||.+.+.+.+.-.. .+++. .|.+. .+.+....++.+.+++ .-+..+.|+++..+.+..
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred cccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccc
Confidence 3344467899999999999999765211 11111 11111 1222233444444432 123566676654433322
Q ss_pred EccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeE-EEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECC
Q 000961 89 LLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTC-ISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~-i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~ 165 (1208)
-....+.|.+++-+|..+ .+++|+.||.+-+||++.... ...+..|...+..+.|||.. ..|++++.||.+.-||-.
T Consensus 175 ~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 175 SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 222334599999999765 667788899999999987753 34567899999999999964 889999999999999976
Q ss_pred C
Q 000961 166 A 166 (1208)
Q Consensus 166 ~ 166 (1208)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 5
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.30 E-value=0.00015 Score=86.06 Aligned_cols=304 Identities=11% Similarity=0.033 Sum_probs=173.0
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccC-CCeEE-------EEE---cCCCC
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNW-------AAF---HPTLP 217 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~-------l~~---sp~g~ 217 (1208)
.+.||+..|.|+|+-+.+.+.....|-- ......-+|-.+...+..-.++. +.+.+ +++ .-||+
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf-----~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr 142 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVF-----NRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGR 142 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeee-----cCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCcccee
Confidence 4677888999999999887765543310 00011111111111110101110 01111 111 13677
Q ss_pred EEEEEeC-CCcEEEEECCCCceeEEEeecCcCCCeEE-------------------EEEccCCCEEEEE-eCCCcEEEEe
Q 000961 218 LIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMNNVSC-------------------VMFHAKQDIIVSN-SEDKSIRVWD 276 (1208)
Q Consensus 218 ~L~sgs~-dg~I~iwd~~~~~~~~~~~l~~h~~~V~~-------------------l~~sp~g~~l~sg-s~dg~I~vwd 276 (1208)
+|..-.. +.+|-..++...++-.+..++. ...+.. +=++|||+.+... -..+.+.+.|
T Consensus 143 ~~findk~n~Rvari~l~~~~~~~i~~iPn-~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID 221 (635)
T PRK02888 143 YLFINDKANTRVARIRLDVMKCDKITELPN-VQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVD 221 (635)
T ss_pred EEEEecCCCcceEEEECccEeeceeEeCCC-ccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEE
Confidence 8888764 5666666766655433333321 111222 2234455544322 2235677788
Q ss_pred CCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE---CCCeeeEeeCCCc------------ceEEecCCEEEEEeCCeEE
Q 000961 277 VTKRTGVQTFRREHDRFWILASHPEMNLLAAGH---DSGMIVFKLERER------------PAFAVSGDSLFYAKDRFLR 341 (1208)
Q Consensus 277 ~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~---~~gi~v~~l~~~~------------~~~s~~~~~L~~~~d~~i~ 341 (1208)
..+.+...++.... +...+.++|+|.++.+.+ ..+..+-.+.... ..+..+|+..++ .++.|.
T Consensus 222 ~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V-~gn~V~ 299 (635)
T PRK02888 222 AETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI-GGSKVP 299 (635)
T ss_pred CccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE-CCCEEE
Confidence 88777777666443 456788999999988775 3333322222111 122335555444 577899
Q ss_pred EEEccC-----CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC---C------CCccc
Q 000961 342 YYEFST-----QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI---G------RGDSV 407 (1208)
Q Consensus 342 v~d~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~---~------~~~~~ 407 (1208)
+.|..+ .+....++..+ .+..+.+||||+++++++. .+.++.++++.+... + .+...
T Consensus 300 VID~~t~~~~~~~v~~yIPVGK--------sPHGV~vSPDGkylyVank-lS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVPK--------NPHGVNTSPDGKYFIANGK-LSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCccccCCcceEEEEECCC--------CccceEECCCCCEEEEeCC-CCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 999887 34444444443 6778999999999888766 556899999876431 0 00001
Q ss_pred ccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC-----------ceeeeecCCcceEEEEE------eCCccEEEEe
Q 000961 408 QDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-----------EVVKKSILPIAADAIFY------AGTGNLLCRA 470 (1208)
Q Consensus 408 ~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~-----------~~~~~l~~~~~v~~i~~------s~dg~~Las~ 470 (1208)
... .......+|.++|...++-.-|..|..||+.. ..+.++..|..+-.+.. .|+|++|++.
T Consensus 371 vev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 371 PEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred ecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 111 11234678999988888888899999999874 35556666665555555 7889999873
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.28 E-value=1.3e-05 Score=82.54 Aligned_cols=196 Identities=14% Similarity=0.136 Sum_probs=118.6
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEE------------EecccccCEEEEEEEcCCCEEEEEECCCeEEEEE
Q 000961 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLID------------RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~------------~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1208)
|+.+.++.+- .|+++..++.+.....-.+.+.. .+..|.++-.+-+.+-.++.+++++.||.+.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5566666543 46667667666666554443332 2223333333333344567899999999999998
Q ss_pred CCCCeE-EEEEc-cCCCCEEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CEEE
Q 000961 80 YKMHRC-LFTLL-GHLDYIRTVQFHHEYPWIVSAS-----DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVV 151 (1208)
Q Consensus 80 ~~~~~~-~~~l~-~h~~~I~~v~fs~d~~~l~s~s-----~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~ 151 (1208)
.+.-.. ...+. .|.+. .+.+....++.+.++. .-+..++|+++..+....-......|.+++-+|.. +.++
T Consensus 118 ~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 764111 01111 11111 1122223344443321 22345666665433222212223449999999965 6778
Q ss_pred EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 000961 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKL 230 (1208)
Q Consensus 152 s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~i 230 (1208)
+|+.||.+.+||.+..... ...+..|...++.+-||| ++..|++++.||.+..
T Consensus 197 cgt~dg~~~l~d~rn~~~p--------------------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMP--------------------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred EecCCCeEEEEEcccccch--------------------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 8889999999999875221 125678999999999999 4568999999999999
Q ss_pred EECCC
Q 000961 231 WRMNE 235 (1208)
Q Consensus 231 wd~~~ 235 (1208)
||.++
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99876
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.28 E-value=0.00067 Score=80.36 Aligned_cols=265 Identities=9% Similarity=0.007 Sum_probs=154.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEccCCC----------CEE-EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000961 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD----------YIR-TVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131 (1208)
Q Consensus 63 ~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~----------~I~-~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l 131 (1208)
+..+.+++.+|.+.-+|.++|+.+........ .+. .+.. ++..++.++.+|.+..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55777788889999999999998877643220 000 0111 2456778888999999999999988877
Q ss_pred ecCCCCEEE-EEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEE
Q 000961 132 TGHNHYVMC-ASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210 (1208)
Q Consensus 132 ~~h~~~V~~-l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 210 (1208)
.... .+.+ ... .+..++.++.++.+.-+|..+++..-..+... ......+...++
T Consensus 147 ~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------------~~~~~~~~~sP~--- 202 (394)
T PRK11138 147 KVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDV------------------PSLTLRGESAPA--- 202 (394)
T ss_pred cCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCC------------------CcccccCCCCCE---
Confidence 6433 2222 112 24567778889999999998876543211100 000000111111
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcC--C---CeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCeeE
Q 000961 211 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM--N---NVSCVMFHA--KQDIIVSNSEDKSIRVWDVTKRTGV 283 (1208)
Q Consensus 211 ~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~--~---~V~~l~~sp--~g~~l~sgs~dg~I~vwd~~~~~~~ 283 (1208)
. .+..++.++.+|.+..+|..+++..-........ . ....+.-+| .+..++.++.+|.+..+|..+|+.+
T Consensus 203 -v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 203 -T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred -E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 1 1235667777888888888877641111111000 0 001111122 2456777788999999999999877
Q ss_pred EEeecCCC--CE----EEEEEeCCCCEEEEEECCCeeeEeeCCCc----ceEEecCCEEEEE-eCCeEEEEEccCCccee
Q 000961 284 QTFRREHD--RF----WILASHPEMNLLAAGHDSGMIVFKLERER----PAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQ 352 (1208)
Q Consensus 284 ~~~~~~~~--~i----~~la~sp~~~~la~g~~~gi~v~~l~~~~----~~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~ 352 (1208)
........ .+ .....+.++.+++.-..+|..+|+..... ......++.+++. .++.+...|..+|+.+.
T Consensus 280 W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 280 WKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 65432211 10 11123345555555555666677654311 1122356777777 88999999999998765
Q ss_pred eEee
Q 000961 353 VIPI 356 (1208)
Q Consensus 353 ~~~~ 356 (1208)
...+
T Consensus 360 ~~~~ 363 (394)
T PRK11138 360 QQKV 363 (394)
T ss_pred EEEc
Confidence 5444
No 324
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.27 E-value=0.031 Score=68.54 Aligned_cols=455 Identities=9% Similarity=0.020 Sum_probs=224.1
Q ss_pred EEeCCCCEEEEEecC---------CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE
Q 000961 16 SFHSKRPWILASLHS---------GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 16 afspdg~~Lasg~~d---------g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1208)
.|+.+.+.+++++-+ ..|++++-. .....+. ..+.++....+.+...++.++.++.+...++..+...
T Consensus 446 gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~ 522 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLR 522 (1096)
T ss_pred cccccCceEEEEccCCceEEEEecccEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeecccee
Confidence 344455555555432 235565522 2333343 2334555555556667777777777777777765522
Q ss_pred EEE-ccCCCCEEEEEEcCCC------CEEEEEECCCcEEEEEC-CCCeEEEEE--ec--CCCCEEEEEEeeCCCEEEEEE
Q 000961 87 FTL-LGHLDYIRTVQFHHEY------PWIVSASDDQTIRIWNW-QSRTCISVL--TG--HNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 87 ~~l-~~h~~~I~~v~fs~d~------~~l~s~s~Dg~I~iwd~-~s~~~i~~l--~~--h~~~V~~l~~~p~~~~l~s~s 154 (1208)
... ......|.|+.++|-+ ++++.|.++..+.+.-. .+...+... .+ -...|.-..+-.+..+|.++.
T Consensus 523 e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlval 602 (1096)
T KOG1897|consen 523 EVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVAL 602 (1096)
T ss_pred eeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEc
Confidence 211 2234679999999752 27888887766655433 233222221 11 123344455555678999999
Q ss_pred CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000961 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (1208)
Q Consensus 155 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~ 234 (1208)
.||.+.-+-+.......... ....+ ...++.--.|+..+..-+.+..|+-..+|..+
T Consensus 603 gdG~l~~fv~d~~tg~lsd~----------Kk~~l-------------Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 603 GDGALLYFVLDINTGQLSDR----------KKVTL-------------GTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred CCceEEEEEEEcccceEccc----------ccccc-------------CCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 99998766543322111000 00011 12333334444444444444445555555443
Q ss_pred CCceeEEEeecCcCCCeE-EEEEcc--CCCEEEEEeCCCcEEEEeCCCCee--EEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 235 ETKAWEVDTLRGHMNNVS-CVMFHA--KQDIIVSNSEDKSIRVWDVTKRTG--VQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 235 ~~~~~~~~~l~~h~~~V~-~l~~sp--~g~~l~sgs~dg~I~vwd~~~~~~--~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
..-. ...+.- ..+. -+.|+. -...++++.. +.+++..+..-.. ++++. .......+++.+....+++.+
T Consensus 660 ~kLv--~spls~--kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s 733 (1096)
T KOG1897|consen 660 GKLV--YSPLSL--KEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLS 733 (1096)
T ss_pred CcEE--Eeccch--HHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEe
Confidence 3221 111100 0010 111221 1233555443 4577665553222 22322 233456677777666666655
Q ss_pred CCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCC-CCEEEEEEec--
Q 000961 310 DSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT-ENAVLICSDV-- 386 (1208)
Q Consensus 310 ~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~llv~~~~-- 386 (1208)
+..-.--....+.. .-..++++|-++-+......+..... -..+.+..|..| +.+++|.++-
T Consensus 734 ~r~e~~~~~~~ee~------------~~s~l~vlD~nTf~vl~~hef~~~E~---~~Si~s~~~~~d~~t~~vVGT~~v~ 798 (1096)
T KOG1897|consen 734 NRIESSAEYYGEEY------------EVSFLRVLDQNTFEVLSSHEFERNET---ALSIISCKFTDDPNTYYVVGTGLVY 798 (1096)
T ss_pred cccccchhhcCCcc------------eEEEEEEecCCceeEEeeccccccce---eeeeeeeeecCCCceEEEEEEEeec
Confidence 43211000000000 12345666666654444333332111 113444458777 5666665541
Q ss_pred ------CCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCc-eeeeecCCc-ceEEE
Q 000961 387 ------DGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE-VVKKSILPI-AADAI 458 (1208)
Q Consensus 387 ------~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~-~~~~l~~~~-~v~~i 458 (1208)
..|.+.+|.+.....-+.. .-..-.+.+.+++- -+|+++|.-. ..|++|++..+ .++.-..+. ++..+
T Consensus 799 Pde~ep~~GRIivfe~~e~~~L~~v-~e~~v~Gav~aL~~-fngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL 874 (1096)
T KOG1897|consen 799 PDENEPVNGRIIVFEFEELNSLELV-AETVVKGAVYALVE-FNGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIAL 874 (1096)
T ss_pred cCCCCcccceEEEEEEecCCceeee-eeeeeccceeehhh-hCCeEEEecC--cEEEEEEccccceehhhhcccCCeEEE
Confidence 3578888888762221111 01112233333322 3677777654 88999999855 443333333 88888
Q ss_pred EEeCCccEEEEeC--Ce--EEEEEcCCCeEEEEEeC---CCeeEEEECCCCCEEEEEeCCeEEEEecCcc
Q 000961 459 FYAGTGNLLCRAE--DR--VVIFDLQQRLVLGDLQT---PFVKYVVWSNDMESVALLSKHAIIIASKKLV 521 (1208)
Q Consensus 459 ~~s~dg~~Las~d--g~--v~lwdl~~~~~l~~~~~---~~v~~v~ws~dg~~la~~s~~~i~i~~~~~~ 521 (1208)
...-.|..++.+| ++ +.-|+-..|...-..+. ...+.+.+-.+..++..-....+++..++..
T Consensus 875 ~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 875 DLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred EEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCC
Confidence 8888888888876 44 44455555544333322 4456666655656654444445777766633
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=1.9e-06 Score=91.72 Aligned_cols=168 Identities=16% Similarity=0.246 Sum_probs=123.6
Q ss_pred CceEeecCCCCEEEEEEeC--CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEE
Q 000961 1 MLTKFETKSNRVKGLSFHS--KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafsp--dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1208)
|+..|+....+ .++|+- .|-. ++.+-+-.|-+-|+.+|... .|. ..+.|.++.|+..++++..|..+|.|.+.
T Consensus 205 ~~~SlQi~~a~--~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~i 279 (425)
T KOG2695|consen 205 MLCSLQIPKAW--SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVI 279 (425)
T ss_pred ceeeecCCcch--hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEE
Confidence 34444444333 225553 2333 34445667888898887533 343 67789999999999999999999999999
Q ss_pred ECCCC-----eEEEEEccCCCCEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCEEEE--EEeeCC
Q 000961 79 NYKMH-----RCLFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTC---ISVLTGHNHYVMCA--SFHPKE 147 (1208)
Q Consensus 79 d~~~~-----~~~~~l~~h~~~I~~v~fs~-d~~~l~s~s~Dg~I~iwd~~s~~~---i~~l~~h~~~V~~l--~~~p~~ 147 (1208)
|++.+ .+...+. |...|+++.... ++++|.+.+.+|+|.+||.+--++ +..+.||...-.-+ ..++..
T Consensus 280 DLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee 358 (425)
T KOG2695|consen 280 DLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE 358 (425)
T ss_pred EeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc
Confidence 99854 3444444 899999998887 788999999999999999986666 88888886544333 335566
Q ss_pred CEEEEEECCCeEEEEECCCCccccccC
Q 000961 148 DLVVSASLDQTVRVWDIGALRKKTVSP 174 (1208)
Q Consensus 148 ~~l~s~s~Dg~V~vwdl~~~~~~~~~~ 174 (1208)
..+++++.|-..|+|.++.+......|
T Consensus 359 g~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 359 GSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ceEEEccCeeEEEEEecccCceeeccC
Confidence 789999999999999999876654433
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.5e-05 Score=83.23 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=79.1
Q ss_pred EEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CEEEE
Q 000961 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVS 152 (1208)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s 152 (1208)
|++.+..+.+....+.+|...|+.++|||..+ ++..++.+..|.|.|+.+..++..+..+ ..+++++|.-+. ++|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555566677888999999999887 7889999999999999999999999888 789999998876 78888
Q ss_pred EECCCeEEEEECCCCc
Q 000961 153 ASLDQTVRVWDIGALR 168 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~ 168 (1208)
|...|.|.+||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8899999999998754
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.24 E-value=3.9e-05 Score=91.44 Aligned_cols=182 Identities=13% Similarity=0.184 Sum_probs=136.8
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEE
Q 000961 63 QPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCAS 142 (1208)
Q Consensus 63 ~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~ 142 (1208)
+..++.|+-...+..+|+.+.+......-..+.|.-+.. +++.+.+|...|+|.+-|..+.+.+.++..|++.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 446777877778889999888877776655555666654 567899999999999999999999999999999997655
Q ss_pred EeeCCCEEEEEEC---------CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEc
Q 000961 143 FHPKEDLVVSASL---------DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (1208)
Q Consensus 143 ~~p~~~~l~s~s~---------Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (1208)
. .|+.|++++. |.-|.|||++..+.....+. +.+ -.-+.|+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---------------------------~~~-P~flrf~ 274 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---------------------------PYG-PQFLRFH 274 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---------------------------ccC-chhhhhc
Confidence 4 5889999875 55689999998775442211 111 1346677
Q ss_pred CCC-CEEEEEeCCCcEEEEECCCCcee--EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000961 214 PTL-PLIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 214 p~g-~~L~sgs~dg~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd 276 (1208)
|.- ..+++++..|...+-|..+-... .+.........+..+.++++++.++.|..+|.|.+|.
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 753 46888889999999984332211 1334444455699999999999999999999999997
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.24 E-value=3.4e-06 Score=62.93 Aligned_cols=39 Identities=23% Similarity=0.595 Sum_probs=37.0
Q ss_pred CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEE
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1208)
|+++.++.+|.++|++|+|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 329
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.23 E-value=0.00036 Score=76.25 Aligned_cols=184 Identities=8% Similarity=-0.074 Sum_probs=113.2
Q ss_pred CCCeEEEEECCCCeEEEEEccC--CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCC
Q 000961 71 DDYKIKVWNYKMHRCLFTLLGH--LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148 (1208)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~h--~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~ 148 (1208)
++|+|..||..+|+.+....-- .....+. ..+++..+++++.++.|..||..+|+.+...... ..+.... ...+.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eeccc
Confidence 4789999999999999887531 1222211 3335667888899999999999999998888752 2211111 23456
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc--C-CCeEEEEEcCCCCEEEEEeCC
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH--D-RGVNWAAFHPTLPLIVSGADD 225 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~-~~V~~l~~sp~g~~L~sgs~d 225 (1208)
.+++++.++.++.+|..+++..... .... . ...........+..++++..+
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSI--------------------------YLTSSPPAGVRSSSSPAVDGDRLYVGTSS 131 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEE--------------------------EE-SSCTCSTB--SEEEEETTEEEEEETC
T ss_pred ccccccceeeeEecccCCcceeeee--------------------------ccccccccccccccCceEecCEEEEEecc
Confidence 7888888999999998876653210 0111 0 011122222237788999989
Q ss_pred CcEEEEECCCCceeEEEeecCcCC--C------eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 000961 226 RQVKLWRMNETKAWEVDTLRGHMN--N------VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ 284 (1208)
Q Consensus 226 g~I~iwd~~~~~~~~~~~l~~h~~--~------V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~ 284 (1208)
+.|..+|..+++..-......... . +.+-....++ .+..++.++.+.-+|..+++.+.
T Consensus 132 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 132 GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW 197 (238)
T ss_dssp SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence 999999999998732222221111 1 1122222244 67777777754334998888654
No 330
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.22 E-value=2.2e-05 Score=93.49 Aligned_cols=185 Identities=10% Similarity=0.103 Sum_probs=142.2
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEE
Q 000961 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTV 99 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v 99 (1208)
++..++.|+....+..+|+++.+..+...-..+.|+-+. .+++++.+|...|+|.+-|..+.+.++++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 345677777777788899998888877755555565555 467899999999999999999999999999999999877
Q ss_pred EEcCCCCEEEEEEC---------CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCcc
Q 000961 100 QFHHEYPWIVSASD---------DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRK 169 (1208)
Q Consensus 100 ~fs~d~~~l~s~s~---------Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~ 169 (1208)
..+ |+.|++++. |.-|+|||++.-+.+..+.-+.++ .-+.|+|.- ..+++++..|...+-|..+...
T Consensus 224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 664 678888875 567899999988777766655554 557788864 6788889999999988544221
Q ss_pred ccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000961 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd 232 (1208)
... -..........+..+.++++++.++.|..+|.|.+|.
T Consensus 301 P~~-----------------------~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPA-----------------------GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred Ccc-----------------------ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 110 0112333445699999999999999999999999998
No 331
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.21 E-value=0.00032 Score=81.54 Aligned_cols=287 Identities=13% Similarity=0.109 Sum_probs=156.2
Q ss_pred cCCCCEEEEEe---------CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 000961 213 HPTLPLIVSGA---------DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (1208)
Q Consensus 213 sp~g~~L~sgs---------~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~ 283 (1208)
|||+++++... ..+.+.+||+.+++. ..+......+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~---~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI---TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE---EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce---EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 57777777643 245789999999874 33333367788999999999999886 568999998777444
Q ss_pred EE-eecC----------------CCCEEEEEEeCCCCEEEEEE--CCCeeeEeeCC---C---cc-----eEEecCCEEE
Q 000961 284 QT-FRRE----------------HDRFWILASHPEMNLLAAGH--DSGMIVFKLER---E---RP-----AFAVSGDSLF 333 (1208)
Q Consensus 284 ~~-~~~~----------------~~~i~~la~sp~~~~la~g~--~~gi~v~~l~~---~---~~-----~~s~~~~~L~ 333 (1208)
+. ..+. -+.-..+-||||++.|+... +..+..+.+.. . .| .+...|...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n- 155 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN- 155 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC-
Confidence 32 1110 12235688999999998753 34443333211 1 01 001111111
Q ss_pred EEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEE-EEecCCCEEEEEEccCCCCCCCcc----cc
Q 000961 334 YAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLI-CSDVDGGSYELYVIPKDSIGRGDS----VQ 408 (1208)
Q Consensus 334 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv-~~~~~~g~v~l~~l~~~~~~~~~~----~~ 408 (1208)
-.-.+.++|+.+++...+........ . ...+..+.|.++++.+++ ..........++.++... +.... ..
T Consensus 156 --p~v~l~v~~~~~~~~~~~~~~~~~~~-~-~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~ 230 (353)
T PF00930_consen 156 --PRVSLFVVDLASGKTTELDPPNSLNP-Q-DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-GETRVVLEETS 230 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHT-S-SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-TTCEEEEEEES
T ss_pred --CceEEEEEECCCCcEEEeeeccccCC-C-ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-CceeEEEEecC
Confidence 12246678888877643222210000 1 237889999999994444 444344455554443321 11110 11
Q ss_pred cccCCceEEEEEE-eCC-cEEEEEcCCCE--EEEEecCCceeeeecCCc-ceEE-EEEeCCccEEEE-e------CCeEE
Q 000961 409 DAKKGLGGSAIFI-ARN-RFAVLDKSSNQ--VLVKNLKNEVVKKSILPI-AADA-IFYAGTGNLLCR-A------EDRVV 475 (1208)
Q Consensus 409 ~~~~~~i~~~~fs-~d~-~~l~~~~~dg~--I~Iwdl~~~~~~~l~~~~-~v~~-i~~s~dg~~Las-~------dg~v~ 475 (1208)
.+.-.......|. +++ .++.....+|- |.+++..+...+.+.... .|.. +.+++++..+.. + ...|+
T Consensus 231 ~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 231 DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 1111222355665 444 66666556664 666666676666666544 7755 568888776643 3 24666
Q ss_pred EEEcCCCeEEEEEeC-CCee-EEEECCCCCEEEEEe
Q 000961 476 IFDLQQRLVLGDLQT-PFVK-YVVWSNDMESVALLS 509 (1208)
Q Consensus 476 lwdl~~~~~l~~~~~-~~v~-~v~ws~dg~~la~~s 509 (1208)
.-++..+..+..+.. .... .+.|||||++++...
T Consensus 311 ~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 311 RVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 667762344455544 3344 899999999887543
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.21 E-value=0.0015 Score=76.04 Aligned_cols=315 Identities=12% Similarity=0.045 Sum_probs=168.5
Q ss_pred cCCCCEEEEEE---------CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccc
Q 000961 102 HHEYPWIVSAS---------DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172 (1208)
Q Consensus 102 s~d~~~l~s~s---------~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~ 172 (1208)
|||+++++... ..+.+.+||+.+++....... ...+....|+|+|+.++... ++.|.+++..+......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57777766642 246789999999776554433 56788899999999999887 68899998877644332
Q ss_pred cCCCcceeeccccccccccccceEEEEEecc-CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEeecCcCC-
Q 000961 173 SPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMN- 249 (1208)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~g~~L~sgs~-dg~I~iwd~~~~~~~~~~~l~~h~~- 249 (1208)
...+. .....|..+. +.+.. -+.-..+-||||+++|+.... +..|..+.+. .......
T Consensus 79 T~dg~-------~~i~nG~~dw----vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~--------~~~~~~~~ 139 (353)
T PF00930_consen 79 TTDGE-------PGIYNGVPDW----VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP--------DYSPPDSQ 139 (353)
T ss_dssp ES--T-------TTEEESB--H----HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE--------EESSSTES
T ss_pred ccccc-------eeEEcCccce----eccccccccccceEECCCCCEEEEEEECCcCCceEEee--------ccCCcccc
Confidence 22110 0000111110 00000 112246899999999887653 3444443321 1111111
Q ss_pred --CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE-ee----cCCCCEEEEEEeCCCCEEEE-EECCCeeeEeeCCC
Q 000961 250 --NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT-FR----REHDRFWILASHPEMNLLAA-GHDSGMIVFKLERE 321 (1208)
Q Consensus 250 --~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~-~~----~~~~~i~~la~sp~~~~la~-g~~~gi~v~~l~~~ 321 (1208)
.+..+.+-.-|.-... -.+.|+|+.+++.... .. ....-+..+.|.+++..+++ -.+..-
T Consensus 140 yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q-------- 207 (353)
T PF00930_consen 140 YPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ-------- 207 (353)
T ss_dssp S-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS--------
T ss_pred CCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCC--------
Confidence 2333343222222211 1377788887765321 11 22334788999999883333 222110
Q ss_pred cceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEc-CCCCEEEEEEecCCCEEEEEEccCCC
Q 000961 322 RPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYS-PTENAVLICSDVDGGSYELYVIPKDS 400 (1208)
Q Consensus 322 ~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~llv~~~~~~g~v~l~~l~~~~ 400 (1208)
....+.++|..++....+......+-. .......|. +++..++..+. .+|.-+||.+....
T Consensus 208 --------------~~~~l~~~d~~tg~~~~~~~e~~~~Wv---~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 208 --------------NRLDLVLCDASTGETRVVLEETSDGWV---DVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDG 269 (353)
T ss_dssp --------------TEEEEEEEEECTTTCEEEEEEESSSSS---SSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTS
T ss_pred --------------CEEEEEEEECCCCceeEEEEecCCcce---eeecccccccCCCCEEEEEEE-cCCCcEEEEEcccc
Confidence 123355667766665444433332211 133455655 88888877777 66677777666543
Q ss_pred CCCCcccccccCCceEE-EEEEeCCcEEE-EEcC----CCEEEEEecC-CceeeeecCCcceE-EEEEeCCccEEEE
Q 000961 401 IGRGDSVQDAKKGLGGS-AIFIARNRFAV-LDKS----SNQVLVKNLK-NEVVKKSILPIAAD-AIFYAGTGNLLCR 469 (1208)
Q Consensus 401 ~~~~~~~~~~~~~~i~~-~~fs~d~~~l~-~~~~----dg~I~Iwdl~-~~~~~~l~~~~~v~-~i~~s~dg~~Las 469 (1208)
.. .. .+....-.|.. +.|.++++.+. ++.. ...|..-+++ +...+.+....... .+.|||+|++++.
T Consensus 270 ~~-~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 270 GK-PR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp SE-EE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred cc-ee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 21 11 23333334544 66777765544 4443 2357777788 77888888776444 9999999998864
No 333
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.19 E-value=0.003 Score=71.24 Aligned_cols=333 Identities=14% Similarity=0.138 Sum_probs=144.4
Q ss_pred ECCCCeEEEEecccccCEEEE-----EEEcCCCEEEEEEC---CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEE
Q 000961 37 DYRMGTLIDRFDEHDGPVRGV-----HFHKSQPLFVSGGD---DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI 108 (1208)
Q Consensus 37 d~~~g~~i~~l~~h~~~V~~l-----~fsp~~~~Lasgs~---Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l 108 (1208)
|..||..+.++..+.+.-..+ +|.++|+.|+.+++ ...+.+.|+.+++..+--.+.........++++++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 667888888886554433333 46788987777665 4567778888877655433322223356778888888
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeC--CCEEEEEECCCeEEEEECCCCccc-----cccCCCcceee
Q 000961 109 VSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKK-----TVSPADDILRL 181 (1208)
Q Consensus 109 ~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~--~~~l~s~s~Dg~V~vwdl~~~~~~-----~~~~~~~~~~~ 181 (1208)
+-......|+-.|+.+.+....+......+-...|..+ +..++-.-.... -|........ ...+....+.+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G-----SHHHHHHHHHC---EEEEEE
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeeh--hccCccccHHHHHHHhhCCCceEEEE
Confidence 77766778999999998877777777777766777543 344332211000 0000000000 00000001110
Q ss_pred ccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeEEEeecCcCCCeEEE
Q 000961 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-------QVKLWRMNETKAWEVDTLRGHMNNVSCV 254 (1208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg-------~I~iwd~~~~~~~~~~~l~~h~~~V~~l 254 (1208)
.-..+..+ ++......+.-+.|+|..+.+++-+..| .|.+.+......+.+..- .....+..=
T Consensus 174 --------dl~tG~~~-~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHE 243 (386)
T PF14583_consen 174 --------DLKTGERK-VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHE 243 (386)
T ss_dssp --------ETTT--EE-EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEE
T ss_pred --------ECCCCcee-EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccc
Confidence 01112222 2223456677899999777666655333 344444444443222211 112335556
Q ss_pred EEccCCCEEEEEe-----CCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEE-ECCCeeeEeeCCCcceEEec
Q 000961 255 MFHAKQDIIVSNS-----EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAG-HDSGMIVFKLERERPAFAVS 328 (1208)
Q Consensus 255 ~~sp~g~~l~sgs-----~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g-~~~gi~v~~l~~~~~~~s~~ 328 (1208)
-|.|||..|.--+ .+..|.-+|..++........ .....+-.++||++++.- ++..+.+-+-
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~---------- 311 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADA---------- 311 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--------------------
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCcccccc----------
Confidence 7899998776533 244577788888765443332 245567778899988743 3323322100
Q ss_pred CCEEEEEeCCeEEEEEccCCcceeeEeecC-----CCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 329 GDSLFYAKDRFLRYYEFSTQKDTQVIPIRR-----PGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 329 ~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
+...+ -.+..|.+++...+....+..... .++ . ...=....|+|||++++..++. .|...||-+.
T Consensus 312 ~~~~~-~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~-~-q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~ 381 (386)
T PF14583_consen 312 GGYKI-ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD-R-QVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVE 381 (386)
T ss_dssp ----------EEEEEETTTTEEEEEEE-------BTTB-S-STT----EE-TTSSEEEEEE-T-TSS-EEEEEE
T ss_pred cccee-cCCcEEEEeccccCceeeeeeccCcceeecCC-C-ccCCCCCccCCCCCEEEEECCC-CCCccEEEEe
Confidence 00000 023355566666555433322110 010 0 0012457999999999988874 4556666543
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.1e-05 Score=81.72 Aligned_cols=258 Identities=11% Similarity=0.032 Sum_probs=146.6
Q ss_pred EEEEECCCCeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEE
Q 000961 33 IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVS 110 (1208)
Q Consensus 33 I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s 110 (1208)
+++.+..+-+..+.+..|...|+.++|||... ++..++.+..|+|.|+++..++.++..| ..+++++|.-|.. +|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 44444444444555567888899999999888 7888999999999999999999988877 7899999987654 7778
Q ss_pred EECCCcEEEEECCCCeE-EEEEec--CCCCEEEEEEe------eCCCEEEEEECCCeEEEEECCCCccccccCCCcceee
Q 000961 111 ASDDQTIRIWNWQSRTC-ISVLTG--HNHYVMCASFH------PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRL 181 (1208)
Q Consensus 111 ~s~Dg~I~iwd~~s~~~-i~~l~~--h~~~V~~l~~~------p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~ 181 (1208)
|...|.|.|||++..+- +..+.+ ...+|..++.- +.+.+++..+.+ +..|++.......
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~---------- 321 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL---------- 321 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC----------
Confidence 88899999999985432 222221 22344443332 234444444332 4566654321110
Q ss_pred ccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC-------cEEE-EECCCCceeEEEeecCcCCC-e-
Q 000961 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-------QVKL-WRMNETKAWEVDTLRGHMNN-V- 251 (1208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg-------~I~i-wd~~~~~~~~~~~l~~h~~~-V- 251 (1208)
....-.+..+...++++++..+.++...... .|-. -|..++... ...-+++.+. -
T Consensus 322 --------------p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pV-c~~r~~~~Gs~~~ 386 (463)
T KOG1645|consen 322 --------------PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPV-CGKRRTYFGSKQT 386 (463)
T ss_pred --------------CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCcee-eeecccccCCccc
Confidence 0001112234455566665444443332210 0111 011111110 1111112110 0
Q ss_pred ----E-EEEEccCCCEEE-EEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeC--CCCEEEEEECCCeeeEeeC
Q 000961 252 ----S-CVMFHAKQDIIV-SNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP--EMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 252 ----~-~l~~sp~g~~l~-sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp--~~~~la~g~~~gi~v~~l~ 319 (1208)
+ .+.-.++.++|+ +++..+.+.+||..+.+.++++... .++..+.... .+.+|++-+++.+.+++.+
T Consensus 387 kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 387 KLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 0 111123445554 4455678999999999999988754 5666665443 2346677676666666543
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.15 E-value=6e-06 Score=61.61 Aligned_cols=36 Identities=17% Similarity=0.554 Sum_probs=34.8
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEE
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWD 37 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd 37 (1208)
+++|++|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999999999999999999999999997
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.00014 Score=85.15 Aligned_cols=137 Identities=10% Similarity=0.133 Sum_probs=100.8
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEE-EecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeE-
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLID-RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC- 85 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~-~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~- 85 (1208)
|+.+|+=-+++..+++++.|++.|.+.+|+-..+.... ...+..+.+..+..|++..++|.|+..|.|.|+-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 45667777788889999999999999999955554332 2234566677788899999999999999999998765321
Q ss_pred ----EEEE-ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEEecCCCCEEEEEEe
Q 000961 86 ----LFTL-LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR----TCISVLTGHNHYVMCASFH 144 (1208)
Q Consensus 86 ----~~~l-~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~----~~i~~l~~h~~~V~~l~~~ 144 (1208)
+... ..|...|++++|++++..+++|...|+|..-.+.+. -..+.+..-.+.|..+...
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1111 237889999999999999999999999999888772 1122233344566666554
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.14 E-value=0.0013 Score=73.98 Aligned_cols=287 Identities=11% Similarity=0.042 Sum_probs=140.4
Q ss_pred EEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 000961 210 AAFHPTLPLIVSGAD---DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 210 l~~sp~g~~L~sgs~---dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~ 286 (1208)
=+|.++|+.|+.++. ...+.+.|+.+++..++....+ .+.....++|+++.++-......|+-.|+.+.+....+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 367889987777665 4457777888888533322221 22335677788888877666678999999998876666
Q ss_pred ecCCCCEEEEEEe--CCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCC
Q 000961 287 RREHDRFWILASH--PEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (1208)
Q Consensus 287 ~~~~~~i~~la~s--p~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 363 (1208)
..+.+..-...|. .++..++...... .-|...... .... .++.. ....|..-|+.+|+...++.-..
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~-~d~~~l~~~---~~f~-e~~~a~p~~~i~~idl~tG~~~~v~~~~~----- 188 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISR-EDWKPLTKW---KGFR-EFYEARPHCRIFTIDLKTGERKVVFEDTD----- 188 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEG-GG-----SH---HHHH-HHHHC---EEEEEEETTT--EEEEEEESS-----
T ss_pred ECCcccccccceeeCCCccEEEEEEEee-hhccCcccc---HHHH-HHHhhCCCceEEEEECCCCceeEEEecCc-----
Confidence 6666655445553 3455543321100 000000000 0000 00111 35567777888888766655432
Q ss_pred CCcCCeEEEEcCCCCEEEEEEe-cCCCE--EEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcC-----CCE
Q 000961 364 LNQSPRTLSYSPTENAVLICSD-VDGGS--YELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKS-----SNQ 435 (1208)
Q Consensus 364 ~~~~i~~l~~spdg~~llv~~~-~~~g~--v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~-----dg~ 435 (1208)
.+..+.|||....+++-+. +.-.. -+||.+..................+..=-|++||..+...+. +..
T Consensus 189 ---wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~ 265 (386)
T PF14583_consen 189 ---WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW 265 (386)
T ss_dssp ----EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred ---cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence 6778999998776665433 21112 367877765443221111122335556678999977665431 234
Q ss_pred EEEEecCCceeeeecCCcceEEEEEeCCccEEEEe--C----------------CeEEEEEcCCCeEEEEEeC-------
Q 000961 436 VLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA--E----------------DRVVIFDLQQRLVLGDLQT------- 490 (1208)
Q Consensus 436 I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las~--d----------------g~v~lwdl~~~~~l~~~~~------- 490 (1208)
|.-+|+.+.....+..-.....+..++||++++-. | -.|++++++.++.......
T Consensus 266 i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~ 345 (386)
T PF14583_consen 266 IAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVL 345 (386)
T ss_dssp EEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------B
T ss_pred EEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceee
Confidence 55566664332322211256677788999998762 1 1567788888765433222
Q ss_pred ---C--CeeEEEECCCCCEEEEEeCC
Q 000961 491 ---P--FVKYVVWSNDMESVALLSKH 511 (1208)
Q Consensus 491 ---~--~v~~v~ws~dg~~la~~s~~ 511 (1208)
. .=-.+.|||||++|+..++-
T Consensus 346 ~~~~q~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 346 DGDRQVTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp TTBSSTT----EE-TTSSEEEEEE-T
T ss_pred cCCCccCCCCCccCCCCCEEEEECCC
Confidence 0 12367999999999988773
No 338
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.14 E-value=0.055 Score=66.48 Aligned_cols=496 Identities=12% Similarity=0.102 Sum_probs=237.6
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE-------EEecccccCEEEEEEEcC----CCEEEEEE---CCCe
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-------DRFDEHDGPVRGVHFHKS----QPLFVSGG---DDYK 74 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i-------~~l~~h~~~V~~l~fsp~----~~~Lasgs---~Dg~ 74 (1208)
.+-..|+.+-++| .|.+|++.|.=++-.+.+-.-. .++ ..-+||..++.-.. ++.++|++ .||+
T Consensus 306 ~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgS 383 (1096)
T KOG1897|consen 306 TSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGS 383 (1096)
T ss_pred cchhhhhhcccCc-eEEEeccCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCceEEEEeCCCCCCc
Confidence 3444556665555 6778887776666665433222 333 24568888877432 34566654 5899
Q ss_pred EEEEECCCC---eEEEEEccCCCCEEEEE--EcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee-CC
Q 000961 75 IKVWNYKMH---RCLFTLLGHLDYIRTVQ--FHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KE 147 (1208)
Q Consensus 75 I~vWd~~~~---~~~~~l~~h~~~I~~v~--fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p-~~ 147 (1208)
+++..-.-+ .-...+.| -..++.+. +.++.. +|+.+-.+ .-++..+...-......+-......+..+. .+
T Consensus 384 LRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g 461 (1096)
T KOG1897|consen 384 LRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTING 461 (1096)
T ss_pred EEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc-ceEEEEEccceEEeccccccccCceEEEEccCC
Confidence 998864322 11123333 34455555 433222 44443322 334444332211111111111122222221 22
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCCCcceeec-cccccc-cccccceEEE-----------EEeccCCCeEEEEEcC
Q 000961 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS-QMNTDL-FGGVDAVVKY-----------VLEGHDRGVNWAAFHP 214 (1208)
Q Consensus 148 ~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~-----------~~~~h~~~V~~l~~sp 214 (1208)
+.|+=.+ ...||+++-.........+.+...... ....++ ....+....+ .-......|.|+.++|
T Consensus 462 ~~lvQvT-s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp 540 (1096)
T KOG1897|consen 462 NQLVQVT-SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISP 540 (1096)
T ss_pred ceEEEEe-cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEeccc
Confidence 2222222 223555554422222222222211111 111111 1111111111 1112245788999997
Q ss_pred CC------CEEEEEeCCCcEEEEECCCCceeEEEe-ecC--cCCCeEEEEEccCCCEEEEEeCCCcEEEEeC--CCCeeE
Q 000961 215 TL------PLIVSGADDRQVKLWRMNETKAWEVDT-LRG--HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV--TKRTGV 283 (1208)
Q Consensus 215 ~g------~~L~sgs~dg~I~iwd~~~~~~~~~~~-l~~--h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~--~~~~~~ 283 (1208)
-| +++++|..+..+.+.-........... +.+ -...|.-..+-.|..+|.++..||.+.-|-+ .++..-
T Consensus 541 ~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls 620 (1096)
T KOG1897|consen 541 LGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS 620 (1096)
T ss_pred CCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEc
Confidence 42 278888877665554333222211111 111 1223444455556889999999998876644 444322
Q ss_pred EEee--cCCCCEEEEEEeCC-CCEEEEEECCCeeeEeeCCC---------cc------eEEecCCEEEEEeCCeEEEEEc
Q 000961 284 QTFR--REHDRFWILASHPE-MNLLAAGHDSGMIVFKLERE---------RP------AFAVSGDSLFYAKDRFLRYYEF 345 (1208)
Q Consensus 284 ~~~~--~~~~~i~~la~sp~-~~~la~g~~~gi~v~~l~~~---------~~------~~s~~~~~L~~~~d~~i~v~d~ 345 (1208)
..-+ ....++.--.|+.. ++.+.+.++.-.++|..... .. .....++.|+++..+.+++.-+
T Consensus 621 d~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~ti 700 (1096)
T KOG1897|consen 621 DRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTI 700 (1096)
T ss_pred cccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEe
Confidence 2111 11223332333332 23333444444443332211 10 1122456788888899998888
Q ss_pred cCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEec---------CCCEEEEEEccCCCCCCCcc--ccccc--C
Q 000961 346 STQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV---------DGGSYELYVIPKDSIGRGDS--VQDAK--K 412 (1208)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~---------~~g~v~l~~l~~~~~~~~~~--~~~~~--~ 412 (1208)
+.-+.+...+++. ...++.+++.+....+.+.+.. +...+....+-...+-+... .+... -
T Consensus 701 d~iqkl~irtvpl------~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~ 774 (1096)
T KOG1897|consen 701 DEIQKLHIRTVPL------GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETA 774 (1096)
T ss_pred cchhhcceeeecC------CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccccccee
Confidence 8755544444332 2277888988855555554321 11122222221111111110 11111 1
Q ss_pred CceEEEEEEeC-CcEEEEEcC----------CCEEEEEecCC-ceeeeecCCc---ceEEEEEeCCccEEEEeCCeEEEE
Q 000961 413 GLGGSAIFIAR-NRFAVLDKS----------SNQVLVKNLKN-EVVKKSILPI---AADAIFYAGTGNLLCRAEDRVVIF 477 (1208)
Q Consensus 413 ~~i~~~~fs~d-~~~l~~~~~----------dg~I~Iwdl~~-~~~~~l~~~~---~v~~i~~s~dg~~Las~dg~v~lw 477 (1208)
..+.++.|..| +.+++.|+. .|.|.|+.+.. +.++.+..+. .+.++.. -+|++||.-+..|++|
T Consensus 775 ~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vrLy 853 (1096)
T KOG1897|consen 775 LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVRLY 853 (1096)
T ss_pred eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEEEE
Confidence 13455568877 777777752 46777777763 3333332221 3333321 2588999999999999
Q ss_pred EcCCCeEEEEEeC--CCeeEEEECCCCCEEEEEeCCe-EEEE
Q 000961 478 DLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSKHA-IIIA 516 (1208)
Q Consensus 478 dl~~~~~l~~~~~--~~v~~v~ws~dg~~la~~s~~~-i~i~ 516 (1208)
++.+++.+..-.. .++..+...-.|..+++++--+ +.+.
T Consensus 854 e~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 854 EWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred EccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 9998865544332 5677778888888898887644 4443
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.14 E-value=0.008 Score=62.47 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=100.8
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~ 100 (1208)
..+++.|++.+.+.--|..+|+++.+-. -..+|-+-+.- -|+.++.|...|.+++-+.++|.....+..-..-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4678889999999999999998875431 22233332222 466799999999999999999987776654333222344
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECC
Q 000961 101 FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 101 fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
..+++..|..++.|++.+..|..+..++...+...+...+-+..|-...|..+...|.|.--...
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 56788899999999999999999999988876554444455566634455556656665544443
No 340
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=3.6e-06 Score=89.62 Aligned_cols=126 Identities=22% Similarity=0.340 Sum_probs=104.0
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-----eEEEEecccccCEEEEEEEc-CCCEEEEEECCCeEEEEECC
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g-----~~i~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
-++.|.++.|+..++++..|+.+|.|...|++.+ ...+.+ -|...|+++..-. ++++|++.+-+|+|++||.+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 3567888999999999999999999999999865 344555 5999999998877 78899999999999999998
Q ss_pred CCeE---EEEEccCCCCEEEEE--EcCCCCEEEEEECCCcEEEEECCCCeEEEEEecC
Q 000961 82 MHRC---LFTLLGHLDYIRTVQ--FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH 134 (1208)
Q Consensus 82 ~~~~---~~~l~~h~~~I~~v~--fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h 134 (1208)
--++ +.++.||...-.-+- ..++...++++++|...|||.+.++..+.++...
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6666 888899876444333 3456668999999999999999999998888643
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.0018 Score=75.25 Aligned_cols=276 Identities=11% Similarity=0.099 Sum_probs=142.7
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC--------
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM-------- 82 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~-------- 82 (1208)
.|+.++|.++..-|++|..+|.|.||.+...+.-. .....+-....|.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998899999999999999876543322 000001111111110 00111122223221
Q ss_pred C-eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe--c------CCCCEEEEEEee-----CC-
Q 000961 83 H-RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT--G------HNHYVMCASFHP-----KE- 147 (1208)
Q Consensus 83 ~-~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~--~------h~~~V~~l~~~p-----~~- 147 (1208)
| .+..-+....++|++++.|.-| +++.|..+|.+.|.|++....+..-. . ....|+++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 1 2333445568899999998555 99999999999999999888877632 2 345788998874 22
Q ss_pred --CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE-EcCC---------
Q 000961 148 --DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA-FHPT--------- 215 (1208)
Q Consensus 148 --~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~-~sp~--------- 215 (1208)
-.+++|+..|.+.+|.+.-.... .+. .........+.++|..+. ++.+
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g-------~f~-------------v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~ 213 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNG-------RFS-------------VQFAGATTNHDSPILSIIPINADTGESALATI 213 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG--------EE-------------EEEEEEE--SS----EEEEEETTT--B-B-BH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCC-------ceE-------------EEEeeccccCCCceEEEEEEECCCCCcccCch
Confidence 47889999999999987310000 000 000001123334443333 2111
Q ss_pred -----------CCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEE-----ccCCCEEEEEeCCCcEEEEeCCC
Q 000961 216 -----------LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF-----HAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 216 -----------g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~-----sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
-+-+++...+..++++...+.+. ........-....+.+ ...+..|++-..+|.++++.+..
T Consensus 214 ~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~--~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 214 SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG--AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp HHHHGGGGT----EEEEEE-SSEEEEE-TT---E--EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred hHhhccccCCCcCcEEEEEcccceEEEeCCCCcc--cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 12345555578899999988775 3333322223334444 23567788889999999999999
Q ss_pred CeeEEEeecCC----CCEEEEEEeCCCCEEEEEECCCeeeEe
Q 000961 280 RTGVQTFRREH----DRFWILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 280 ~~~~~~~~~~~----~~i~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
-+.+....... ..+...+++++|..+...+...+.++.
T Consensus 292 Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~s 333 (395)
T PF08596_consen 292 LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFS 333 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEE
T ss_pred chHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEE
Confidence 88887776532 123455667788777666555544443
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.001 Score=78.23 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=99.1
Q ss_pred CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC
Q 000961 135 NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (1208)
Q Consensus 135 ~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (1208)
...|.--+++..+++++.|+.-|.+.+|+-.++.... ....+..+.+.....|+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~--------------------------~~~~~~~~~~~~~~vs~ 86 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK--------------------------LKNEGATGITCVRSVSS 86 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhc--------------------------ccccCccceEEEEEecc
Confidence 3445445566678999999999999999987754332 12333556677788999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEee----cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEEe
Q 000961 215 TLPLIVSGADDRQVKLWRMNETKAWEVDTL----RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR----TGVQTF 286 (1208)
Q Consensus 215 ~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l----~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~----~~~~~~ 286 (1208)
+..+++.|+..|.|.++.+..........+ ..|...|+++.|++++..+.+|...|+|..-.+.+. ...+.+
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee
Confidence 999999999999999998877443222111 237889999999999999999999999998887762 112233
Q ss_pred ecCCCCEEEEEEe
Q 000961 287 RREHDRFWILASH 299 (1208)
Q Consensus 287 ~~~~~~i~~la~s 299 (1208)
-...+.|-.+...
T Consensus 167 l~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 167 LSEDSEIVQLDYL 179 (726)
T ss_pred eccCcceEEeecc
Confidence 3344555555443
No 343
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=97.95 E-value=0.02 Score=67.95 Aligned_cols=96 Identities=14% Similarity=0.153 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 207 VNWAAFHPTLPLIVSGADDR-----QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 207 V~~l~~sp~g~~L~sgs~dg-----~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
-..++|-|+|..+++-+.|| .|.++..+.-..-+...-.+....+..++|+-....++.+ ..+.+.+|-..+..
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 34589999999999977655 3555654433211122222334456667777655545444 34579999876655
Q ss_pred eEEEeecCCCCEEEEEEeCCCC
Q 000961 282 GVQTFRREHDRFWILASHPEMN 303 (1208)
Q Consensus 282 ~~~~~~~~~~~i~~la~sp~~~ 303 (1208)
..-.....-..+.-+.|+|...
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEEeecCCCcceeeeccccC
Confidence 4433344445577789999654
No 344
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.94 E-value=0.02 Score=63.62 Aligned_cols=269 Identities=13% Similarity=0.100 Sum_probs=159.9
Q ss_pred CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC----------CCeEEEEECCCCeEEEEEccCCC------
Q 000961 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD----------DYKIKVWNYKMHRCLFTLLGHLD------ 94 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~----------Dg~I~vWd~~~~~~~~~l~~h~~------ 94 (1208)
+.+.|+|..+++.+..+.. +-.-.+..+|+++.+.+++. .-.|.+||..+-.....+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998887753 22334678999998887532 33699999999877775532221
Q ss_pred -CEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccc
Q 000961 95 -YIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKK 170 (1208)
Q Consensus 95 -~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~ 170 (1208)
......++.|+++++.... ..+|.|-|+..++.+..+.... |...-|.+ +.+.+.+.||++....+...-+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 2234678889998877543 4678999999999888876322 22233433 56889999999999888742221
Q ss_pred cccCCCcceeeccccccccccccceEEEEEeccCCC-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecC---
Q 000961 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG--- 246 (1208)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~--- 246 (1208)
.... .. .+.....+ +..-++...+..++.-+.+|.|+--|+..........+.-
T Consensus 171 ~~~~-----------t~-----------~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 171 AQKS-----------TK-----------VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTD 228 (342)
T ss_dssp EEEE-----------EE-----------ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred eEee-----------cc-----------ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCc
Confidence 1100 00 11111111 1223344444555556667777777776655322222211
Q ss_pred -------cCCCeEEEEEccCCCEEEEEeC---CC-------cEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCC-EEEEE
Q 000961 247 -------HMNNVSCVMFHAKQDIIVSNSE---DK-------SIRVWDVTKRTGVQTFRREHDRFWILASHPEMN-LLAAG 308 (1208)
Q Consensus 247 -------h~~~V~~l~~sp~g~~l~sgs~---dg-------~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~-~la~g 308 (1208)
..+.-.-+++++..+.|.+.-. ++ .|.++|+.+++.+..+... ..+.+|+.+.+.+ +|.+.
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEE
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEE
Confidence 0122334677776655554321 22 3888899999999887753 3466788887665 33222
Q ss_pred ECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 309 HDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 309 ~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
+. .++.+.+||..+|+.+..
T Consensus 308 ~~-------------------------~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 308 SA-------------------------GDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp ET-------------------------TTTEEEEEETTT--EEEE
T ss_pred cC-------------------------CCCeEEEEeCcCCcEEee
Confidence 21 367888999999877443
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.92 E-value=0.0064 Score=73.90 Aligned_cols=288 Identities=12% Similarity=0.121 Sum_probs=154.8
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEeccccc------CEE--EEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccC
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDG------PVR--GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH 92 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~------~V~--~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h 92 (1208)
+..+.+++.++.|.-.|..+|+.+-++..... .+. .+... ++..++.++.++.|.-+|.++|+.+......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44567777889999999999998877653322 111 11111 2257888888999999999999998877543
Q ss_pred CCC-----EE-EEEEcCCCCEEEEEE---------CCCcEEEEECCCCeEEEEEecCCCC--------------------
Q 000961 93 LDY-----IR-TVQFHHEYPWIVSAS---------DDQTIRIWNWQSRTCISVLTGHNHY-------------------- 137 (1208)
Q Consensus 93 ~~~-----I~-~v~fs~d~~~l~s~s---------~Dg~I~iwd~~s~~~i~~l~~h~~~-------------------- 137 (1208)
... +. ...+. + ..++.++ .+|.+..+|..+|+.+.........
T Consensus 140 ~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 11 11222 2 3455554 3678999999999988877542110
Q ss_pred E-EEEEEeeCCCEEEEEECCC------------------eEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 138 V-MCASFHPKEDLVVSASLDQ------------------TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 138 V-~~l~~~p~~~~l~s~s~Dg------------------~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
+ .+.++.+.+..++.++.++ .|.-+|..+++..-...... ...+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~--------~~~~--------- 280 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP--------HDLW--------- 280 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC--------CCCc---------
Confidence 1 1234445567788887665 56667776655432211000 0000
Q ss_pred EEeccCCCeE-EEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEe-------
Q 000961 199 VLEGHDRGVN-WAAFHPTL---PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS------- 267 (1208)
Q Consensus 199 ~~~~h~~~V~-~l~~sp~g---~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs------- 267 (1208)
.......++. .+. .-++ ..+++++.+|.+...|..+++..-..... ...++.+| ..+..++
T Consensus 281 ~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 281 DYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccC
Confidence 0000001100 000 0122 25778888999999999998862221111 11123333 2233322
Q ss_pred -----------CCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCC--cceEEecCCEEEE
Q 000961 268 -----------EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERE--RPAFAVSGDSLFY 334 (1208)
Q Consensus 268 -----------~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~--~~~~s~~~~~L~~ 334 (1208)
.+|.+.-.|..+++.+.+......+.. |..... .......++.+++
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~---------------------~~~g~~~~~~~~~~~g~~v~~ 411 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDS---------------------WNIGFPHWGGSLATAGNLVFA 411 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccc---------------------cccCCcccCcceEecCCeEEE
Confidence 234455555555554444332110000 000000 0122345566777
Q ss_pred E-eCCeEEEEEccCCcceeeEeec
Q 000961 335 A-KDRFLRYYEFSTQKDTQVIPIR 357 (1208)
Q Consensus 335 ~-~d~~i~v~d~~~~~~~~~~~~~ 357 (1208)
+ .++.++.+|..+|+.+-...+.
T Consensus 412 g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 412 GAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred ECCCCeEEEEECCCCceeeEEECC
Confidence 6 8899999999999887665553
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.90 E-value=0.011 Score=69.88 Aligned_cols=245 Identities=10% Similarity=0.044 Sum_probs=131.4
Q ss_pred eEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-------ecCCCCEEEEEEeeC
Q 000961 74 KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-------TGHNHYVMCASFHPK 146 (1208)
Q Consensus 74 ~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-------~~h~~~V~~l~~~p~ 146 (1208)
.|.||+.. |+.+.++.-..+.|.++.|+.+. .|++...||+++++|+.... ...+ .-....+....+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 58888864 66777665444899999999865 56677789999999986433 1111 111122222233334
Q ss_pred CCEEEEEECCCeEEEEECCCCccc-cccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 000961 147 EDLVVSASLDQTVRVWDIGALRKK-TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (1208)
Q Consensus 147 ~~~l~s~s~Dg~V~vwdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d 225 (1208)
| ++.-+.++.+.+.+--..... ...+ ...+. ......+........++.+....+....+
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~------------~~p~~-----~~~~~~~~~~~~i~~l~~~~~~~i~~~~g 199 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLP------------EIPGL-----WTKFHWWPSWTVIPLLSSDRVVEILLANG 199 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccc------------cCCCc-----ccccccccccccceEeecCcceEEEEecC
Confidence 4 333344555544432211100 0000 00000 00000011100013344555555555556
Q ss_pred CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC-CCCEEEEEEeCCCCE
Q 000961 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-HDRFWILASHPEMNL 304 (1208)
Q Consensus 226 g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-~~~i~~la~sp~~~~ 304 (1208)
+.+.+.+....+. ....+++..+++||+++++|.-..+|.+.+.+..-.+....+... ......+.|..+...
T Consensus 200 ~~i~~i~~~~~~~------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 200 ETIYIIDENSFKQ------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CEEEEEEcccccc------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 6666444332211 112468999999999999999999999999987666666555544 345678888876544
Q ss_pred EEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccC
Q 000961 305 LAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST 347 (1208)
Q Consensus 305 la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~ 347 (1208)
++. ..+.+.+.........+..++...+...-..+++..-.+
T Consensus 274 ~l~-~~~~l~lvg~~~~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 274 VLS-WEDELLLVGPDGDSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred EEE-eCCEEEEECCCCCceEEeccCceEEeccCCceEEEeCCc
Confidence 333 355555555444444555555533333223355554433
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.82 E-value=0.015 Score=65.21 Aligned_cols=249 Identities=13% Similarity=0.184 Sum_probs=137.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee---cCC
Q 000961 214 PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR---REH 290 (1208)
Q Consensus 214 p~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~---~~~ 290 (1208)
..++.|+.|+.+| +.+++...... .... .+...|..+...|+-+.+++-+ |+.++++++.......... ...
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--~~~i-~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--PTRI-LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--ceeE-eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 4568899999999 89999833221 1111 1223399999999888777765 4999999987654433211 000
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCC-----cceeeEeecCCCCCCCC
Q 000961 291 DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ-----KDTQVIPIRRPGSTSLN 365 (1208)
Q Consensus 291 ~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~~~~~~ 365 (1208)
....... .....++..|... ........|+++..+.+.+|.+... +....+.++
T Consensus 80 ~~~~~~~---------~~~~~~v~~f~~~----~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-------- 138 (275)
T PF00780_consen 80 SRSLPTK---------LPETKGVSFFAVN----GGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-------- 138 (275)
T ss_pred ccccccc---------ccccCCeeEEeec----cccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--------
Confidence 0000000 0001111111100 0000122344446668888887763 122222222
Q ss_pred cCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCccccccc--------CCceEEEEEEeCCcEEEEEcCCCEEE
Q 000961 366 QSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAK--------KGLGGSAIFIARNRFAVLDKSSNQVL 437 (1208)
Q Consensus 366 ~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~--------~~~i~~~~fs~d~~~l~~~~~dg~I~ 437 (1208)
..+.+++|. ++.++++.. ..+.+.++.......+....... ......+.-.+++.+++.- +..-.
T Consensus 139 ~~~~~i~~~--~~~i~v~~~---~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~ 211 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTS---KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGV 211 (275)
T ss_pred CCcEEEEEe--CCEEEEEeC---CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEE
Confidence 288999998 566666654 56888888854433222111100 1122233333456666654 34555
Q ss_pred EEecCCceee--eecCCcceEEEEEeCCccEEEEeCCeEEEEEcCCCeEEEEEeCCCeeEE
Q 000961 438 VKNLKNEVVK--KSILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQTPFVKYV 496 (1208)
Q Consensus 438 Iwdl~~~~~~--~l~~~~~v~~i~~s~dg~~Las~dg~v~lwdl~~~~~l~~~~~~~v~~v 496 (1208)
+.|..|...+ .+.-...+.++.+... .+++..++.|.+|++.+++.+..+....++.+
T Consensus 212 fv~~~G~~~r~~~i~W~~~p~~~~~~~p-yli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l 271 (275)
T PF00780_consen 212 FVNKNGEPSRKSTIQWSSAPQSVAYSSP-YLIAFSSNSIEVRSLETGELVQTIPLPNIRLL 271 (275)
T ss_pred EEcCCCCcCcccEEEcCCchhEEEEECC-EEEEECCCEEEEEECcCCcEEEEEECCCEEEE
Confidence 5666665443 4444445667776544 45566788899999999999999887655543
No 348
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.80 E-value=0.018 Score=63.84 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=40.8
Q ss_pred EEEEEecC-CceeeeecCCcceEEEEEeCCcc-EEE-E--eCCeEEEEEcCCCeEEEEEeC
Q 000961 435 QVLVKNLK-NEVVKKSILPIAADAIFYAGTGN-LLC-R--AEDRVVIFDLQQRLVLGDLQT 490 (1208)
Q Consensus 435 ~I~Iwdl~-~~~~~~l~~~~~v~~i~~s~dg~-~La-s--~dg~v~lwdl~~~~~l~~~~~ 490 (1208)
.|.++|++ .+.+.++....++.+|.++.+.+ +|. . .++.+.+||..+|+.+..+..
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 36667777 66788888777888999999866 443 2 268999999999999998875
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.76 E-value=0.016 Score=70.42 Aligned_cols=251 Identities=10% Similarity=0.074 Sum_probs=142.9
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEecccccC-----E-EEEEEEcCCCEEEEEE---------CCCeEEEEECCCCeEE
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGP-----V-RGVHFHKSQPLFVSGG---------DDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~-----V-~~l~fsp~~~~Lasgs---------~Dg~I~vWd~~~~~~~ 86 (1208)
..++.++.+|.|.-+|.++|+.+-++...... + .+..+. +..++.++ .++.+...|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67788888999999999999999877533221 1 111222 23455553 3688999999999988
Q ss_pred EEEccCCCC--------------------E-EEEEEcCCCCEEEEEECCC------------------cEEEEECCCCeE
Q 000961 87 FTLLGHLDY--------------------I-RTVQFHHEYPWIVSASDDQ------------------TIRIWNWQSRTC 127 (1208)
Q Consensus 87 ~~l~~h~~~--------------------I-~~v~fs~d~~~l~s~s~Dg------------------~I~iwd~~s~~~ 127 (1208)
......... | ...++.+.+..++.++.++ .|.-.|..+|+.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 776532110 1 1234444556777777665 799999999999
Q ss_pred EEEEecCCCCEE------EEEEe----eCCC---EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccc
Q 000961 128 ISVLTGHNHYVM------CASFH----PKED---LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (1208)
Q Consensus 128 i~~l~~h~~~V~------~l~~~----p~~~---~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1208)
......-..... ...+. -++. .++.++.+|.+...|..+++..-.....
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------------ 330 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------------------ 330 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------------------
Confidence 887652111110 01111 1232 6788888999999999887654321100
Q ss_pred eEEEEEeccCCCeEEEEEcCCCCEEEE------------------EeCCCcEEEEECCCCceeEEEeecCcC------CC
Q 000961 195 VVKYVLEGHDRGVNWAAFHPTLPLIVS------------------GADDRQVKLWRMNETKAWEVDTLRGHM------NN 250 (1208)
Q Consensus 195 ~~~~~~~~h~~~V~~l~~sp~g~~L~s------------------gs~dg~I~iwd~~~~~~~~~~~l~~h~------~~ 250 (1208)
...++.+| ..+.. ...+|.+.-.|..+++..-......+. .+
T Consensus 331 ------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 ------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred ------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 00011111 11111 123455666666666542111111110 11
Q ss_pred e--EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEE-EEEeCCCCEEEEE
Q 000961 251 V--SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWI-LASHPEMNLLAAG 308 (1208)
Q Consensus 251 V--~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~-la~sp~~~~la~g 308 (1208)
. ..+.. .+..+++++.||.|+.+|..+|+.+..++....-... +.+..++++.+..
T Consensus 397 ~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 397 HWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred ccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEE
Confidence 1 11222 4678889999999999999999999887753322222 2234455544433
No 350
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.76 E-value=0.03 Score=65.47 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=65.2
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
..-.....|.+++++|+...++.|+.||.|.+||...+.. ......-.++.++|||+|..+++|+..|.+.+||+.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 3445678899999999999999999999999999987643 223345668899999999999999999999999976
Q ss_pred C
Q 000961 279 K 279 (1208)
Q Consensus 279 ~ 279 (1208)
-
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 3
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.031 Score=65.54 Aligned_cols=253 Identities=14% Similarity=0.099 Sum_probs=167.3
Q ss_pred CEEEEEEeCCCCEEEEEec-CCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEEE
Q 000961 11 RVKGLSFHSKRPWILASLH-SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~-dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1208)
....+.+.|++..+.+... ...+..-+............-...-.+++.++.++ ..++...+..|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 4567788888865555432 22466666542222222211113345778888888 455555678999999887777766
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEEC
Q 000961 89 LLGHLDYIRTVQFHHEYPWIVSASD---DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDI 164 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~~l~s~s~---Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl 164 (1208)
...-. ....++++++++.+..+.. ++++.+.|..+++.+.....-..+ ..+++.|+|..++.+. .++.|.+.|.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 64322 6688999999988877766 689999999999988886544444 8899999998666665 7899999997
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEE
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEV 241 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d---g~I~iwd~~~~~~~~~ 241 (1208)
.+..... .... ....-...-..+.++|+|..+.+.... +.+...|..++.....
T Consensus 190 ~~~~v~~-~~~~----------------------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 190 SGNSVVR-GSVG----------------------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCcceec-cccc----------------------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 6644321 0000 001112233468899999976665543 5899999888875322
Q ss_pred EeecCcCCCeEEEEEccCCCEEEEEeCC-CcEEEEeCCCCeeEEEeecC
Q 000961 242 DTLRGHMNNVSCVMFHAKQDIIVSNSED-KSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp~g~~l~sgs~d-g~I~vwd~~~~~~~~~~~~~ 289 (1208)
....+.. ....+..+|+|..+.+.... +.+.+-|..+......+...
T Consensus 247 ~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 247 DLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred ccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 1222222 56678999999998887444 78999998877776665533
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00072 Score=79.39 Aligned_cols=164 Identities=13% Similarity=0.189 Sum_probs=108.9
Q ss_pred CeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEE
Q 000961 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGS 417 (1208)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~ 417 (1208)
..+.++++.+++...+..... .-...+|+|||+.++++.. .+|...||.++..... .. .+....+.-..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g--------~~~~P~fspDG~~l~f~~~-rdg~~~iy~~dl~~~~-~~-~Lt~~~gi~~~ 286 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG--------NNGAPAFSPDGSKLAFSSS-RDGSPDIYLMDLDGKN-LP-RLTNGFGINTS 286 (425)
T ss_pred ceEEEEeccCCccceeeccCC--------ccCCccCCCCCCEEEEEEC-CCCCccEEEEcCCCCc-ce-ecccCCccccC
Confidence 468899999988877766443 3445789999999998877 4466666665543322 11 23333343447
Q ss_pred EEEEeCCcEEEEEcCC-C--EEEEEecCCceeeeecCCc-ceEEEEEeCCccEEEEe---CCe--EEEEEcCCCeEEEEE
Q 000961 418 AIFIARNRFAVLDKSS-N--QVLVKNLKNEVVKKSILPI-AADAIFYAGTGNLLCRA---EDR--VVIFDLQQRLVLGDL 488 (1208)
Q Consensus 418 ~~fs~d~~~l~~~~~d-g--~I~Iwdl~~~~~~~l~~~~-~v~~i~~s~dg~~Las~---dg~--v~lwdl~~~~~l~~~ 488 (1208)
-.|+|||+.++..++. | .|.+++.++.....+.... .-..-.+||||++++.. +|. |.++|+.++.....+
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 8899999998887632 3 3777888876666665544 22266799999999774 344 777888777654444
Q ss_pred eC-CCeeEEEECCCCCEEEEEeCCe
Q 000961 489 QT-PFVKYVVWSNDMESVALLSKHA 512 (1208)
Q Consensus 489 ~~-~~v~~v~ws~dg~~la~~s~~~ 512 (1208)
.. .....-.|.++|+.+...+...
T Consensus 367 t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 367 TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred cccccCCCCCcCCCCceEEEeccCC
Confidence 44 3345678889998887665543
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.0056 Score=73.11 Aligned_cols=235 Identities=8% Similarity=0.045 Sum_probs=141.7
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCeeEEEeecCC-CCEEEEEEe--CCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEE
Q 000961 259 KQDIIVSNSE-DKSIRVWDVTKRTGVQTFRREH-DRFWILASH--PEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (1208)
Q Consensus 259 ~g~~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~-~~i~~la~s--p~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~ 334 (1208)
||+++..... +..|-..++...++-+.+...+ ..+..+.+- |+..++.+++.-.+ .+..+|..+..
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~----------PlpnDGk~l~~ 209 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRI----------PLPNDGKDLDD 209 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCccccc----------ccCCCCCEeec
Confidence 6778887764 4556666666555544433322 234444443 66666666653222 23334444433
Q ss_pred E--eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEe-c-CCCEEEEEEccCCCCCCCcccccc
Q 000961 335 A--KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD-V-DGGSYELYVIPKDSIGRGDSVQDA 410 (1208)
Q Consensus 335 ~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~-~-~~g~v~l~~l~~~~~~~~~~~~~~ 410 (1208)
. ..+.+.+.|..+.+....+.+.. .+..+.++|+|+++.+++. + .+..+...+... ...+. .+..
T Consensus 210 ~~ey~~~vSvID~etmeV~~qV~Vdg--------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~v-vfni 278 (635)
T PRK02888 210 PKKYRSLFTAVDAETMEVAWQVMVDG--------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVV-VFNI 278 (635)
T ss_pred ccceeEEEEEEECccceEEEEEEeCC--------CcccceECCCCCEEEEeccCcccCcceeeecccc--CceEE-EEch
Confidence 3 56777788888765544444432 5577899999999887652 1 222232222111 10000 0000
Q ss_pred cCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC------ceeeeecCCcceEEEEEeCCccEEEEe---CCeEEEEEcCC
Q 000961 411 KKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN------EVVKKSILPIAADAIFYAGTGNLLCRA---EDRVVIFDLQQ 481 (1208)
Q Consensus 411 ~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~------~~~~~l~~~~~v~~i~~s~dg~~Las~---dg~v~lwdl~~ 481 (1208)
.. .-.+.++|++...+ +++|.+.|... ..+..+..+.....+.+||||++++++ +.+|.++|+.+
T Consensus 279 ~~----iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 279 AR----IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred HH----HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 00 01344678877663 58899999876 366777777789999999999999775 68999999988
Q ss_pred Ce------------EEEEEeC-CCeeEEEECCCCCEEEEEeCC-eEEEEecCc
Q 000961 482 RL------------VLGDLQT-PFVKYVVWSNDMESVALLSKH-AIIIASKKL 520 (1208)
Q Consensus 482 ~~------------~l~~~~~-~~v~~v~ws~dg~~la~~s~~-~i~i~~~~~ 520 (1208)
.+ .+.+... -+.....|+.+|....+..-+ .+..|+...
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 65 3555555 456788999998766555544 477777554
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.70 E-value=0.0098 Score=64.33 Aligned_cols=203 Identities=13% Similarity=0.156 Sum_probs=114.9
Q ss_pred EEccCCCCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCeEEEEEecC-CCCEEEEEEeeCCCEEEEEECCCeEEEEECC
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIV-SASDDQTIRIWNWQSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~-s~s~Dg~I~iwd~~s~~~i~~l~~h-~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
.+.+-...+..++|+|+...|+ +....+.|...+. +|+.+..+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555666799999999866554 5555678888886 57788777533 3567889998777666655568999999985
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEE--E-eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---Ccee
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV--L-EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE---TKAW 239 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~---~~~~ 239 (1208)
........ .....+. + ..++.++-.++|+|.++.|+++-...-..+|.+.. ....
T Consensus 95 ~~~~~~~~-------------------~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 95 DDTTSLDR-------------------ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp ---TT--E-------------------EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--
T ss_pred ccccccch-------------------hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccce
Confidence 42211100 0001111 1 23567799999999988888887777677776654 2111
Q ss_pred EEEee------cCcCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeEEEeecCC---------CCEEEEEEeCCCC
Q 000961 240 EVDTL------RGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTGVQTFRREH---------DRFWILASHPEMN 303 (1208)
Q Consensus 240 ~~~~l------~~h~~~V~~l~~sp~-g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~---------~~i~~la~sp~~~ 303 (1208)
.+... ......++++.++|. +.+++.+..+..|..+| .+|+.+..+.-.. ...-.|++.++|+
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred eeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 11111 223456889999996 45666677788899999 6687776655433 2467899999998
Q ss_pred EEEEEECC
Q 000961 304 LLAAGHDS 311 (1208)
Q Consensus 304 ~la~g~~~ 311 (1208)
+.+++-.+
T Consensus 235 LYIvsEpN 242 (248)
T PF06977_consen 235 LYIVSEPN 242 (248)
T ss_dssp EEEEETTT
T ss_pred EEEEcCCc
Confidence 88877544
No 355
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.016 Score=68.99 Aligned_cols=355 Identities=17% Similarity=0.182 Sum_probs=180.9
Q ss_pred CEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeeeecC--Cc---ceEEEEEeCC
Q 000961 389 GSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSIL--PI---AADAIFYAGT 463 (1208)
Q Consensus 389 g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~--~~---~v~~i~~s~d 463 (1208)
-.++||++.+...+.. .-..+.+..+-|+.+..+++... +|++.||++.++....... +. .|....+..+
T Consensus 64 ~~I~If~~sG~lL~~~----~w~~~~lI~mgWs~~eeLI~v~k-~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRI----LWKHGELIGMGWSDDEELICVQK-DGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred eeEEEEeccccchHHH----HhcCCCeeeecccCCceEEEEec-cceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 4688888886655433 23344788899998888877776 8999999999776655321 11 4555556666
Q ss_pred ccEEEEeCCeEEEE---------EcCC---------------C----eEEEEEe-----------C------------CC
Q 000961 464 GNLLCRAEDRVVIF---------DLQQ---------------R----LVLGDLQ-----------T------------PF 492 (1208)
Q Consensus 464 g~~Las~dg~v~lw---------dl~~---------------~----~~l~~~~-----------~------------~~ 492 (1208)
|-.+.+.+|++.+- .+.. . ..+-.+. . +.
T Consensus 139 GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 139 GVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred ceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCce
Confidence 66665554444332 1111 0 0000000 0 34
Q ss_pred eeEEEECCCCCEEEEEeCCe-EEEEecCccce-eeee--cceeeeeeEEecCCeEEEecCCeeeeEecCCceeEEEeccc
Q 000961 493 VKYVVWSNDMESVALLSKHA-IIIASKKLVHQ-CTLH--ETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDV 568 (1208)
Q Consensus 493 v~~v~ws~dg~~la~~s~~~-i~i~~~~~~~~-~~~~--e~~~iks~~wd~~~~~iy~t~~~i~y~l~~g~~g~i~~l~~ 568 (1208)
+..+..|++.++++..+..+ +.+.+.++.++ +... +....+..+|..++..+.+=.+.+...-++|+.-.+-.-..
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~V~f~yd~t 298 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDSVQFYYDET 298 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCccccccCCC
Confidence 67788899999999888766 77777776554 2322 33345678998655443333333333334444322221111
Q ss_pred cEEEEEEeCCEEEEEe--------cCCceEEEEcChhh------------------HHHHHhhcccccc--cchH-----
Q 000961 569 PIYITKVSGNTIFCLD--------RDGKNRAIVIDATE------------------YDHVMSMIRNSQL--CGQA----- 615 (1208)
Q Consensus 569 ~~~l~~~~~~~l~~l~--------r~~~~~~~~ld~~e------------------~~~~l~~i~~~~~--~~~~----- 615 (1208)
......+.|=+++.-+ ......++.+.++| .++.+++++...- +.+.
T Consensus 299 ~~l~~E~DGVRI~t~t~~EFl~rvp~~~enIF~igS~ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~ 378 (829)
T KOG2280|consen 299 AILSAEVDGVRIITSTSHEFLQRVPAETENIFKIGSTEPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAAC 378 (829)
T ss_pred ceeeeccCeeEEeccchHHHHHhCChhhhhHhhcCCCCchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111222333332221 01111122223332 1233333331000 0000
Q ss_pred ------HH-----------HHHHhCCChhhhhc---------cccCcch----------------hhHHHHhcCCHHHHH
Q 000961 616 ------MI-----------AYLQQKGFPEVALH---------FVKDERT----------------RFNLALESGNIQIAV 653 (1208)
Q Consensus 616 ------i~-----------~yl~~~g~~e~Al~---------~~~~~~~----------------~f~lal~~g~~~~A~ 653 (1208)
.. .|+ +...+++-.. .+.++++ -.+-.+..+.|..|.
T Consensus 379 ~ef~pe~QK~LL~AAsfGk~~l-~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaI 457 (829)
T KOG2280|consen 379 DEFQPEEQKSLLRAASFGKASL-RTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAI 457 (829)
T ss_pred hccCHHHHHHHHHHHhhccccc-ccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHH
Confidence 00 011 1111111111 1112111 112334568899999
Q ss_pred HHHHHhCChh-----HHHHHHHHHHHc---CChhHHHHHHHhhcC--cchhHHHHH-----hcCCHHHHHHHHHHHHHcC
Q 000961 654 ASAKEIDEKD-----HWYRLGVEALRQ---GNAGIVEYAYQRTKN--FERLSFLYL-----ITGNMDKLSKMLKIAEVKN 718 (1208)
Q Consensus 654 ~~a~~~~~~~-----~w~~La~~al~~---g~~~~Ae~~y~~~~d--~~~l~~l~~-----~~g~~~kl~k~~~~~~~~~ 718 (1208)
+.|+.++-|. +...+|+.-..+ .+-+++...=.|+++ ...+++.-. -.|..+-.+++.+ ...
T Consensus 458 Qva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle---~E~ 534 (829)
T KOG2280|consen 458 QVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLE---LEP 534 (829)
T ss_pred HHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHh---cCC
Confidence 9999887665 456777777776 566778888888888 777776632 2344444444433 122
Q ss_pred CchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHH
Q 000961 719 DVMGQFHNALYLGDVKERVKILESAGHLPLAYIT 752 (1208)
Q Consensus 719 ~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~ 752 (1208)
+-.......+.+++++.|.+--.++|+.++-+..
T Consensus 535 ~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~V 568 (829)
T KOG2280|consen 535 RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQV 568 (829)
T ss_pred CccchhHHHhccchHHHHHHHHHhcCCchhHHHH
Confidence 2222222344456666666666666666666544
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.032 Score=65.92 Aligned_cols=210 Identities=12% Similarity=0.070 Sum_probs=114.9
Q ss_pred EEEEeCCCCEEEEEecC-----------CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 14 GLSFHSKRPWILASLHS-----------GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~d-----------g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
.++.+|.|.-+|....+ ..|+||+ ..|+++.++.-..+.|.++.|+.+. .|++...||.++++|+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-
Confidence 35667777777766433 1599999 5777887765444899999998865 45566789999999986
Q ss_pred CeEEEEEc-------cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCEE---------E-EEEe
Q 000961 83 HRCLFTLL-------GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CISVLTGHNHYVM---------C-ASFH 144 (1208)
Q Consensus 83 ~~~~~~l~-------~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~-~i~~l~~h~~~V~---------~-l~~~ 144 (1208)
|+....+. .....+....+..+| ++.-..++.+.+.+-.... ....+..-..... . ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 33322211 111223333444455 3333445555444322211 1111110000000 0 1233
Q ss_pred eCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 145 p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
.+....+....++.+.+.+-...+ .+ ...+++..++.||+|++++.-..
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~------------------------------~i-~~~~~i~~iavSpng~~iAl~t~ 236 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFK------------------------------QI-DSDGPIIKIAVSPNGKFIALFTD 236 (410)
T ss_pred cCcceEEEEecCCEEEEEEccccc------------------------------cc-cCCCCeEEEEECCCCCEEEEEEC
Confidence 333333444444444433321100 01 12468999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC
Q 000961 225 DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g 260 (1208)
+|.+.+.+..-.+........ .......+.|.-+.
T Consensus 237 ~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 237 SGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGND 271 (410)
T ss_pred CCCEEEEECcccceeEEeecC-cCCCCcEEEEECCC
Confidence 999999887666542222222 23456677777554
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.60 E-value=0.011 Score=68.88 Aligned_cols=289 Identities=11% Similarity=0.117 Sum_probs=134.2
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC--------
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-------- 124 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-------- 124 (1208)
.|+.+.|+++..-|++|...|.|.||.+...+... ......-....+.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876433221 0000111111111100 0011122233321
Q ss_pred -CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc
Q 000961 125 -RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (1208)
Q Consensus 125 -~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 203 (1208)
-.+...+....++|++++.+ +=.+++.|..+|.+.|.|+++........... .......
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------~~~~~~~ 134 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------SFLSKSS 134 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---------------------T-SS-
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------ccccccc
Confidence 12344455568899999997 44599999999999999998865432110000 0001112
Q ss_pred CCCeEEEEEc-----CCC---CEEEEEeCCCcEEEEECC--CCceeEE---EeecCcCCCeEEEE-EccC-C--------
Q 000961 204 DRGVNWAAFH-----PTL---PLIVSGADDRQVKLWRMN--ETKAWEV---DTLRGHMNNVSCVM-FHAK-Q-------- 260 (1208)
Q Consensus 204 ~~~V~~l~~s-----p~g---~~L~sgs~dg~I~iwd~~--~~~~~~~---~~l~~h~~~V~~l~-~sp~-g-------- 260 (1208)
...++++.|. .|+ ..+++|+..|.+.+|.+. .+..+.+ .....+.++|..+. ++.+ |
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATIS 214 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHH
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchh
Confidence 2345566665 233 478999999999999875 2222222 12224556666554 3211 1
Q ss_pred ------------CEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEec
Q 000961 261 ------------DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVS 328 (1208)
Q Consensus 261 ------------~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~ 328 (1208)
.+++++ .+..+|++...+.+..+......-....+.+-+-.. ...
T Consensus 215 ~~~~l~~g~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~----------------------~~~ 271 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTIS----------------------RNG 271 (395)
T ss_dssp HHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-----------------------EEE
T ss_pred HhhccccCCCcCcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecc----------------------cCC
Confidence 134444 456799998887776554431111111122211000 001
Q ss_pred CCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 329 GDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 329 ~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
+..|+.. .+|.+++|.+..-+.+....+....... .....+++++|..+..++. ..+.++.+..
T Consensus 272 ~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~---~~~~ssis~~Gdi~~~~gp---sE~~l~sv~~ 336 (395)
T PF08596_consen 272 GYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR---RLSSSSISRNGDIFYWTGP---SEIQLFSVWG 336 (395)
T ss_dssp EEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH---HHTT-EE-TTS-EEEE-SS---SEEEEEEEES
T ss_pred ceEEEEEECCCcEEEEECCCchHhhcccCCCccccc---cccccEECCCCCEEEEeCc---ccEEEEEEEc
Confidence 1222333 7899999999987766555554322211 4556788999996666555 4555555443
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.0038 Score=73.40 Aligned_cols=195 Identities=12% Similarity=0.105 Sum_probs=117.4
Q ss_pred EeecCcCCCeEEEEEccCCCEEEEEe---CC-CcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEe
Q 000961 242 DTLRGHMNNVSCVMFHAKQDIIVSNS---ED-KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp~g~~l~sgs---~d-g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
..+......+..-.|+|++..++..+ .. ..+.++|+.++....... ..+.-..-+|+|||+.++..+...
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd----- 259 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD----- 259 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCC-----
Confidence 33444455667778999988765542 22 358889988776554433 223334567888888777665422
Q ss_pred eCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 318 LERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 318 l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
..-.|.++|+.++.... +.... +.-+.-.|+|||+.++..++ ..|.-.||...
T Consensus 260 ------------------g~~~iy~~dl~~~~~~~---Lt~~~-----gi~~~Ps~spdG~~ivf~Sd-r~G~p~I~~~~ 312 (425)
T COG0823 260 ------------------GSPDIYLMDLDGKNLPR---LTNGF-----GINTSPSWSPDGSKIVFTSD-RGGRPQIYLYD 312 (425)
T ss_pred ------------------CCccEEEEcCCCCccee---cccCC-----ccccCccCCCCCCEEEEEeC-CCCCcceEEEC
Confidence 13456677777766332 11111 13336789999999998876 44555666665
Q ss_pred CCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCC-CE--EEEEecCCce-eeeecCCcceEEEEEeCCccEEEEeC
Q 000961 398 KDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSS-NQ--VLVKNLKNEV-VKKSILPIAADAIFYAGTGNLLCRAE 471 (1208)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~d-g~--I~Iwdl~~~~-~~~l~~~~~v~~i~~s~dg~~Las~d 471 (1208)
.+..... ......+.-....|+|||++++..+.. |. |.+.++.+.. .+.+........-.++++|+.+....
T Consensus 313 ~~g~~~~--riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 313 LEGSQVT--RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCCcee--EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 5433221 122222222278899999998887743 33 6667766332 55555444556677888988887653
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.55 E-value=0.044 Score=61.34 Aligned_cols=241 Identities=12% Similarity=0.102 Sum_probs=136.4
Q ss_pred CCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE----------
Q 000961 19 SKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT---------- 88 (1208)
Q Consensus 19 pdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~---------- 88 (1208)
..+++|+.|+.+| |.+++.......... .+..+|..+...|+-+.|++-++ +.+.++++.+-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccccc
Confidence 4578999999998 899998333322222 13334999999998887777654 9999999875433321
Q ss_pred ----EccCCCCEEEEE--EcCCCCEEEEEECCCcEEEEECCCC-----eEEEEEecCCCCEEEEEEeeCCCEEEEEECCC
Q 000961 89 ----LLGHLDYIRTVQ--FHHEYPWIVSASDDQTIRIWNWQSR-----TCISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 89 ----l~~h~~~I~~v~--fs~d~~~l~s~s~Dg~I~iwd~~s~-----~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
.......+...+ -...+...+.......|.+|.+... +....+. -...+.+++|. ++.++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-
Confidence 111223344444 1123334444444569999988753 3444544 34778999998 5678888754
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEE-EEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK-YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~ 236 (1208)
...+.|+.+.......... +.... ........++..+... ++.+|++. +..-.+.|..+.
T Consensus 158 ~f~~idl~~~~~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~ 218 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPS----------------DSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGE 218 (275)
T ss_pred ceEEEecCCCCceEEeCcc----------------CCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCC
Confidence 4778888865443221100 00000 0111112233333333 34555543 333334444433
Q ss_pred ceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCC
Q 000961 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290 (1208)
Q Consensus 237 ~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~ 290 (1208)
.. ....+.. ...+.++++. ..+|+..+.+ .|.||++.+++.++++...+
T Consensus 219 ~~-r~~~i~W-~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 219 PS-RKSTIQW-SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred cC-cccEEEc-CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 21 1122222 2345566664 4577776664 59999999999999887543
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.52 E-value=0.043 Score=59.43 Aligned_cols=205 Identities=15% Similarity=0.184 Sum_probs=108.8
Q ss_pred EeecCcCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeEEEeecCC-CCEEEEEEeCCCCEEEEEECCCeeeEeeC
Q 000961 242 DTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTGVQTFRREH-DRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp~g~-~l~sgs~dg~I~vwd~~~~~~~~~~~~~~-~~i~~la~sp~~~~la~g~~~gi~v~~l~ 319 (1208)
..+.+-...++.++|+|+.+ ++++....+.|..++. +|+.+..+.... +..-.|++..++.++++.-.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er--------- 84 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER--------- 84 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT---------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC---------
Confidence 45667777899999999755 6666777888888886 578887776443 55778888777765554321
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEEccCC-cc-----eeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEE
Q 000961 320 RERPAFAVSGDSLFYAKDRFLRYYEFSTQ-KD-----TQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYEL 393 (1208)
Q Consensus 320 ~~~~~~s~~~~~L~~~~d~~i~v~d~~~~-~~-----~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l 393 (1208)
++.+.++++... +. ...+.+..... . +..+..++|.|.++.++++-.. .-..+
T Consensus 85 -----------------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-N~G~EGla~D~~~~~L~v~kE~--~P~~l 143 (248)
T PF06977_consen 85 -----------------DQRLYIFTIDDDTTSLDRADVQKISLGFPNK-G-NKGFEGLAYDPKTNRLFVAKER--KPKRL 143 (248)
T ss_dssp -----------------TTEEEEEEE----TT--EEEEEEEE---S-----SS--EEEEEETTTTEEEEEEES--SSEEE
T ss_pred -----------------CCcEEEEEEeccccccchhhceEEecccccC-C-CcceEEEEEcCCCCEEEEEeCC--CChhh
Confidence 233333333110 00 01111111100 1 3368999999998888876543 33556
Q ss_pred EEccCCCCCCCc---c--c---ccccCCceEEEEEEeC-CcEEEEEcCCCEEEEEecCCceeeeecCCc----------c
Q 000961 394 YVIPKDSIGRGD---S--V---QDAKKGLGGSAIFIAR-NRFAVLDKSSNQVLVKNLKNEVVKKSILPI----------A 454 (1208)
Q Consensus 394 ~~l~~~~~~~~~---~--~---~~~~~~~i~~~~fs~d-~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~----------~ 454 (1208)
|.+......... . . .......+.++.|.|. +++++.+..+..|.++|.+++.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Q 223 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQ 223 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---S
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCC
Confidence 666541100000 0 0 1122335677888876 477888888888999998887666555332 5
Q ss_pred eEEEEEeCCccEEEEe-CCeEEEE
Q 000961 455 ADAIFYAGTGNLLCRA-EDRVVIF 477 (1208)
Q Consensus 455 v~~i~~s~dg~~Las~-dg~v~lw 477 (1208)
...|+|.++|++.+++ .+..++|
T Consensus 224 pEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 224 PEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEEE-TT--EEEEETTTEEEEE
T ss_pred ccEEEECCCCCEEEEcCCceEEEe
Confidence 7889999999888776 4544444
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.52 E-value=0.097 Score=62.51 Aligned_cols=244 Identities=11% Similarity=0.115 Sum_probs=129.4
Q ss_pred EEEEEEeCCCCEEEEEe-cCC----eEEEEECCCCeEEEEe-cccccCEEEEEEEcCCCEEEEEEC-----------CCe
Q 000961 12 VKGLSFHSKRPWILASL-HSG----VIQLWDYRMGTLIDRF-DEHDGPVRGVHFHKSQPLFVSGGD-----------DYK 74 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~-~dg----~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp~~~~Lasgs~-----------Dg~ 74 (1208)
+...++||+|+++|.+. ..| .|+++|+.+|+.+... .... -..+.|.++++.|+-... ...
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 44688999999999774 334 5999999999876532 2211 234999999887766542 234
Q ss_pred EEEEECCCCeEE--EEEccCCC--CEEEEEEcCCCCEEEEEECC----CcEEEEECCCC----eEEEEEecCCCCEEEEE
Q 000961 75 IKVWNYKMHRCL--FTLLGHLD--YIRTVQFHHEYPWIVSASDD----QTIRIWNWQSR----TCISVLTGHNHYVMCAS 142 (1208)
Q Consensus 75 I~vWd~~~~~~~--~~l~~h~~--~I~~v~fs~d~~~l~s~s~D----g~I~iwd~~s~----~~i~~l~~h~~~V~~l~ 142 (1208)
|+.|.+.+...- ..+..... ....+..++|+++|+..+.. ..+.+.+...+ .....+..+...+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788888765322 33333222 26789999999987754432 34777788764 22333333333343333
Q ss_pred EeeCCCEEEEEEC---CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEE
Q 000961 143 FHPKEDLVVSASL---DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219 (1208)
Q Consensus 143 ~~p~~~~l~s~s~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L 219 (1208)
-+..+.+++.... .+.|...++....... ....+..+...+.-..+...+.+|
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~------------------------~~~~l~~~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAE------------------------WWTVLIPEDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGG------------------------EEEEEE--SSSEEEEEEEEETTEE
T ss_pred EccCCEEEEeeCCCCCCcEEEEeccccccccc------------------------ceeEEcCCCCceeEEEEEEECCEE
Confidence 3333334333322 3456666665533211 111333444433333333334445
Q ss_pred EEE-eCCC--cEEEEECC-CCceeEEEeecCcCCCeEEEEEccCCCEEEEE--eC--CCcEEEEeCCCCeeE
Q 000961 220 VSG-ADDR--QVKLWRMN-ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN--SE--DKSIRVWDVTKRTGV 283 (1208)
Q Consensus 220 ~sg-s~dg--~I~iwd~~-~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sg--s~--dg~I~vwd~~~~~~~ 283 (1208)
+.. ..++ .|+++++. +... ....+. -.+.|..+...++++.+... |. -+++..||+.+++..
T Consensus 340 vl~~~~~~~~~l~v~~~~~~~~~-~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 340 VLSYRENGSSRLRVYDLDDGKES-REIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEETTEEEEEEEETT-TEEE-EEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEEECCccEEEEEECCCCcEE-eeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 444 4444 57888888 4332 122222 23446666655655544332 21 246888888877654
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.46 E-value=0.023 Score=65.15 Aligned_cols=216 Identities=15% Similarity=0.137 Sum_probs=126.1
Q ss_pred CeEEEEECCCCeEEEEecc-cccCEEEEE---EEcC----CCEEEEEEC---------C-CeEEEEECCCC----eEEEE
Q 000961 31 GVIQLWDYRMGTLIDRFDE-HDGPVRGVH---FHKS----QPLFVSGGD---------D-YKIKVWNYKMH----RCLFT 88 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~-h~~~V~~l~---fsp~----~~~Lasgs~---------D-g~I~vWd~~~~----~~~~~ 88 (1208)
+.|++.|..+.+.+.++.- ....+.+++ |..+ .++|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4689999888887776642 222344433 3332 568888853 2 89999999874 12222
Q ss_pred E--ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe-EEEEEe-cCCCCEEEEEEeeCCCEEEEEECCCeEEEEEC
Q 000961 89 L--LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT-CISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 89 l--~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~-~i~~l~-~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl 164 (1208)
+ ....++|++++-. ++ +|+++. .+.|.+|++...+ ....-. .....++++... ++++++|+....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 2357889998877 33 455544 5799999998777 443332 223466666665 679999999888888754
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------c
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-------K 237 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~-------~ 237 (1208)
+..... ............++++.|-++++.++++..+|.+.++..... .
T Consensus 157 ~~~~~~------------------------l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 157 DEENNK------------------------LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp ETTTE-------------------------EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred EccCCE------------------------EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccc
Confidence 431100 011122233556888889877679999999999999987631 1
Q ss_pred -eeEEEeecCcCCCeEEE---EEcc--CCC------EEEEEeCCCcEEEE
Q 000961 238 -AWEVDTLRGHMNNVSCV---MFHA--KQD------IIVSNSEDKSIRVW 275 (1208)
Q Consensus 238 -~~~~~~l~~h~~~V~~l---~~sp--~g~------~l~sgs~dg~I~vw 275 (1208)
.......-.....|+++ .+.| .+. .++.++.+|.|.+.
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 11111112233456666 4444 121 37777788877643
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.41 E-value=0.32 Score=59.46 Aligned_cols=109 Identities=9% Similarity=0.065 Sum_probs=70.0
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEecccc-cCEE----------EEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHD-GPVR----------GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~-~~V~----------~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
+..|.+++.++.|.-.|..+|+.+-++.... ..+. .+++ .+..++.++.|+.+.-.|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777788899999999999887764211 1111 1222 2346777888999999999999988765
Q ss_pred ccC--CC--CEEEEEEcCCCCEEEEEEC------CCcEEEEECCCCeEEEEEe
Q 000961 90 LGH--LD--YIRTVQFHHEYPWIVSASD------DQTIRIWNWQSRTCISVLT 132 (1208)
Q Consensus 90 ~~h--~~--~I~~v~fs~d~~~l~s~s~------Dg~I~iwd~~s~~~i~~l~ 132 (1208)
... .. .+.+--.-.++ .+++++. +|.|..+|..+|+.+..+.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 421 11 11111001133 4555432 6899999999999887654
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.39 E-value=0.052 Score=64.82 Aligned_cols=244 Identities=11% Similarity=0.115 Sum_probs=130.9
Q ss_pred eEEEEEcCCCCEEEEEe-CCC----cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC-----------
Q 000961 207 VNWAAFHPTLPLIVSGA-DDR----QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK----------- 270 (1208)
Q Consensus 207 V~~l~~sp~g~~L~sgs-~dg----~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg----------- 270 (1208)
+....++|+|++++.+- ..| .++++|+.+++... ..+... ...++.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34678999999988763 333 59999999997632 122221 123499999988877765433
Q ss_pred cEEEEeCCCCeeE--EEeecCCCC--EEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeC-CeEEEEEc
Q 000961 271 SIRVWDVTKRTGV--QTFRREHDR--FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD-RFLRYYEF 345 (1208)
Q Consensus 271 ~I~vwd~~~~~~~--~~~~~~~~~--i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d-~~i~v~d~ 345 (1208)
.|+.|.+.+...- ..+...... ...+..++++++++.....+ .+ ..+.+.++
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~-----------------------~~~s~v~~~d~ 259 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG-----------------------TSESEVYLLDL 259 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS-----------------------SSEEEEEEEEC
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc-----------------------ccCCeEEEEec
Confidence 3788888766432 334443333 56788899999887665433 23 45667777
Q ss_pred cCC----cceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecC--CCEEEEEEccCCCCCCCcccccccCC--ceEE
Q 000961 346 STQ----KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD--GGSYELYVIPKDSIGRGDSVQDAKKG--LGGS 417 (1208)
Q Consensus 346 ~~~----~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~--~g~v~l~~l~~~~~~~~~~~~~~~~~--~i~~ 417 (1208)
..+ .....+.....+ ....+... +..+.+.++.+ ++.+.-.++...........+..+.. .+..
T Consensus 260 ~~~~~~~~~~~~l~~~~~~------~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~ 331 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSPREDG------VEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED 331 (414)
T ss_dssp CCTTTSS-SEEEEEESSSS-------EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred cccCCCcCCcEEEeCCCCc------eEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence 664 111222211111 11222222 44444444433 33444444443321111112223333 2333
Q ss_pred EEEEeCCcEEEEEcCCC--EEEEEecC-CceeeeecCCc--ceEEEEEeCCccEE-EE-----eCCeEEEEEcCCCeEE
Q 000961 418 AIFIARNRFAVLDKSSN--QVLVKNLK-NEVVKKSILPI--AADAIFYAGTGNLL-CR-----AEDRVVIFDLQQRLVL 485 (1208)
Q Consensus 418 ~~fs~d~~~l~~~~~dg--~I~Iwdl~-~~~~~~l~~~~--~v~~i~~s~dg~~L-as-----~dg~v~lwdl~~~~~l 485 (1208)
+... .+.+++....++ .|+++++. +.....+..+. .|..+...+++..+ ++ ..++++.||+.+++..
T Consensus 332 ~~~~-~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 332 VSLF-KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 3322 334444444444 48899999 88777777766 45565555555544 22 2689999999998764
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.39 E-value=4.8e-05 Score=87.50 Aligned_cols=203 Identities=16% Similarity=0.237 Sum_probs=131.6
Q ss_pred CCCEEEEEEeC--CCCEEEEEecCCeEEEEECCCCeEE--EEecccccCEEEEEEEc-CCCEEEEEE----CCCeEEEEE
Q 000961 9 SNRVKGLSFHS--KRPWILASLHSGVIQLWDYRMGTLI--DRFDEHDGPVRGVHFHK-SQPLFVSGG----DDYKIKVWN 79 (1208)
Q Consensus 9 ~~~V~~lafsp--dg~~Lasg~~dg~I~iWd~~~g~~i--~~l~~h~~~V~~l~fsp-~~~~Lasgs----~Dg~I~vWd 79 (1208)
...++|++++- +...+++|..+|.|.+-.++...-- ....+|..+.++++|++ |.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45678888755 4568899999999999987654322 33457888999999998 455777763 467899999
Q ss_pred CCCC--eEE--EEEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee-CCCEEEEE
Q 000961 80 YKMH--RCL--FTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSA 153 (1208)
Q Consensus 80 ~~~~--~~~--~~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p-~~~~l~s~ 153 (1208)
+.++ .+. ..+. +......+++|..+.+.+.+|.....+.++|++.. +.....-.+..+..+...| .++++++-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceecc
Confidence 9876 111 1122 23445668999999999999999999999998732 1111122234566677788 66777776
Q ss_pred ECCCeEEEEEC-CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEEE-EeCCCcEEE
Q 000961 154 SLDQTVRVWDI-GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVS-GADDRQVKL 230 (1208)
Q Consensus 154 s~Dg~V~vwdl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~s-gs~dg~I~i 230 (1208)
. ||.|.+||. ...+..... +. .........+..++|.|... ++++ .-+.++|++
T Consensus 215 ~-dg~iAiwD~~rnienpl~~--------------i~--------~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQI--------------IL--------RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred c-cCceeeccchhhhccHHHH--------------Hh--------hCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 6 999999993 332211100 00 00011123578899999543 3333 345678888
Q ss_pred EECCC
Q 000961 231 WRMNE 235 (1208)
Q Consensus 231 wd~~~ 235 (1208)
+++..
T Consensus 272 ydi~~ 276 (783)
T KOG1008|consen 272 YDICV 276 (783)
T ss_pred ecccc
Confidence 88754
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.31 Score=57.22 Aligned_cols=247 Identities=11% Similarity=0.056 Sum_probs=156.8
Q ss_pred EEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEE-CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEE
Q 000961 33 IQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSA 111 (1208)
Q Consensus 33 I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~ 111 (1208)
+.+++..+......+..+. ....+...+++..+.... ....+.+-+................-..++.++.++.++..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 6677766666665555444 456677888885444332 22255555554222222122121445678888888855544
Q ss_pred -ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC---CCeEEEEECCCCccccccCCCcceeecccccc
Q 000961 112 -SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL---DQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 112 -s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
..++.|.+.|..+.+.......-. ....++++|+++.+..+.. ++++.+.|-.+.+....
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--------------- 155 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--------------- 155 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE---------------
Confidence 446899999988877777665332 5678999999988877766 57788888766443321
Q ss_pred ccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEe---ecCcCCCeEEEEEccCCCEE
Q 000961 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDT---LRGHMNNVSCVMFHAKQDII 263 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~---l~~h~~~V~~l~~sp~g~~l 263 (1208)
...+. .+ ..++++|+|..+.+.. .++.|.+.|......+. .. ...-......+.++|+|+.+
T Consensus 156 -----------~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~ 221 (381)
T COG3391 156 -----------IPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRV 221 (381)
T ss_pred -----------EecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEE
Confidence 11111 23 7899999999666655 78999999987776422 11 12223345678999999976
Q ss_pred EEEeCC---CcEEEEeCCCCeeEEEeecCCC-CEEEEEEeCCCCEEEEEEC
Q 000961 264 VSNSED---KSIRVWDVTKRTGVQTFRREHD-RFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 264 ~sgs~d---g~I~vwd~~~~~~~~~~~~~~~-~i~~la~sp~~~~la~g~~ 310 (1208)
.+.... +.+...|..++.....-..... ....+..+|+|..+.+...
T Consensus 222 yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 222 YVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred EEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 655443 5899999888777665221222 4567888898888776653
No 367
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.32 E-value=0.16 Score=59.51 Aligned_cols=150 Identities=16% Similarity=0.289 Sum_probs=92.7
Q ss_pred CCCEEEEEEeCCCCEEEEEe--cCCeEEEEECCCCeEEEEecccccCEEEEEEEcC----CCEEEEEECCCeEEEEECC-
Q 000961 9 SNRVKGLSFHSKRPWILASL--HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS----QPLFVSGGDDYKIKVWNYK- 81 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~--~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~----~~~Lasgs~Dg~I~vWd~~- 81 (1208)
-.+|.+++|..-...+++.. ++|.+++=| .+.+..| ..|.++.|.|- .+.|........|.||.+.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 35788999974444444543 455554333 3445555 34889999885 4455556667899999875
Q ss_pred ----CCeEEEEEccCC---C--CEEEEEEcCCCCEEEEEECCCcEEEEECC--CCeEEEEEecCCCCEEEEEEeeCCCEE
Q 000961 82 ----MHRCLFTLLGHL---D--YIRTVQFHHEYPWIVSASDDQTIRIWNWQ--SRTCISVLTGHNHYVMCASFHPKEDLV 150 (1208)
Q Consensus 82 ----~~~~~~~l~~h~---~--~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~--s~~~i~~l~~h~~~V~~l~~~p~~~~l 150 (1208)
+.+.+..-..+- - --..+.|||....|++-.....-.+++++ +.+....++ ..+.|.|.+|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEE
Confidence 233333322211 1 12457899999888776665555566665 333333443 46789999999999877
Q ss_pred EEEEC-CCeEEEEECCC
Q 000961 151 VSASL-DQTVRVWDIGA 166 (1208)
Q Consensus 151 ~s~s~-Dg~V~vwdl~~ 166 (1208)
+++-. .=.-++||-..
T Consensus 171 VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeCCeEEEEEecCch
Confidence 76643 33457787543
No 368
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.18 E-value=0.00015 Score=83.61 Aligned_cols=159 Identities=14% Similarity=0.282 Sum_probs=106.2
Q ss_pred ecCCCCEEEEEEeC-CCCEEEEEec----CCeEEEEECCCC--eEEE--Eec-ccccCEEEEEEEcCCCEEEEEECCCeE
Q 000961 6 ETKSNRVKGLSFHS-KRPWILASLH----SGVIQLWDYRMG--TLID--RFD-EHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1208)
Q Consensus 6 ~~h~~~V~~lafsp-dg~~Lasg~~----dg~I~iWd~~~g--~~i~--~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1208)
.+|....++++|++ |.++||+|.. +..+.|||+.++ .+.. .|. +-.....+++|-.+.+++.+|.....+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 35667889999999 7788888843 567999999876 2111 122 233445689999999999999999999
Q ss_pred EEEECCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEC-CC-CeEEEEEec----CCCCEEEEEEeeCC-
Q 000961 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNW-QS-RTCISVLTG----HNHYVMCASFHPKE- 147 (1208)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~v~fs~-d~~~l~s~s~Dg~I~iwd~-~s-~~~i~~l~~----h~~~V~~l~~~p~~- 147 (1208)
.++|++.. +.....-.+..+..+...| .+.++++-+ ||.|-+||. .. ..++..+.. ....+..++|.|..
T Consensus 179 ~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 179 HIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred hhhhhhhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 99998721 1222222345677788888 566666655 999999993 22 122222221 22358999999965
Q ss_pred CEEEEEE-CCCeEEEEECCC
Q 000961 148 DLVVSAS-LDQTVRVWDIGA 166 (1208)
Q Consensus 148 ~~l~s~s-~Dg~V~vwdl~~ 166 (1208)
..+++.+ ..++|+.+|+..
T Consensus 257 glla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 257 GLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred chhhhhccCcceEEEecccc
Confidence 3445544 457899999865
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.17 E-value=0.43 Score=58.37 Aligned_cols=264 Identities=12% Similarity=0.095 Sum_probs=143.3
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEecc--ccc--CEEEEEEEcCCCEEEEEE------CCCeEEEEECCCCeEEEEEcc
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDE--HDG--PVRGVHFHKSQPLFVSGG------DDYKIKVWNYKMHRCLFTLLG 91 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~--h~~--~V~~l~fsp~~~~Lasgs------~Dg~I~vWd~~~~~~~~~l~~ 91 (1208)
..++.++.++.|.-.|.++|+.+-.... +.. .+++--.--++ .++++. .+|.|..+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4677788899999999999999876642 111 11111001133 445443 268999999999998876532
Q ss_pred CCC-------------------------------CE-EEEEEcCCCCEEEEEECC-----C-----------cEEEEECC
Q 000961 92 HLD-------------------------------YI-RTVQFHHEYPWIVSASDD-----Q-----------TIRIWNWQ 123 (1208)
Q Consensus 92 h~~-------------------------------~I-~~v~fs~d~~~l~s~s~D-----g-----------~I~iwd~~ 123 (1208)
-.. .+ ..+.+.++..+++.+... + .|.-.|.+
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 110 11 123555555556555421 2 67778899
Q ss_pred CCeEEEEEecCCCCEE---------EEEEeeCCC---EEEEEECCCeEEEEECCCCccccccCCCc--ce--eeccc-cc
Q 000961 124 SRTCISVLTGHNHYVM---------CASFHPKED---LVVSASLDQTVRVWDIGALRKKTVSPADD--IL--RLSQM-NT 186 (1208)
Q Consensus 124 s~~~i~~l~~h~~~V~---------~l~~~p~~~---~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~--~~--~~~~~-~~ 186 (1208)
+|+....++...+.+. -+....+|+ .++.++.+|.+.+.|-.+++.....+... .. .+... ..
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 9999887764332221 122223554 78899999999999999887632111000 00 00000 00
Q ss_pred cc------cc-cccceEEEEEeccCCCeEE--EEEcCCCCEEEEEeCC--------------------------------
Q 000961 187 DL------FG-GVDAVVKYVLEGHDRGVNW--AAFHPTLPLIVSGADD-------------------------------- 225 (1208)
Q Consensus 187 ~~------~~-~~~~~~~~~~~~h~~~V~~--l~~sp~g~~L~sgs~d-------------------------------- 225 (1208)
.. .. .........+.+..+++++ ++++|+..++++...+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 00 00 0001111222333333332 4566655554443322
Q ss_pred -CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC
Q 000961 226 -RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 226 -g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
|.|.-+|+.+++. .-..........+. ..-.+.+++.++.+|.++.+|..+|+.+..++..
T Consensus 440 ~g~l~AiD~~tGk~--~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKI--VWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCce--eeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4466677777764 11111111111111 1124557777888999999999999999888754
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.15 E-value=0.038 Score=67.87 Aligned_cols=213 Identities=11% Similarity=0.009 Sum_probs=117.8
Q ss_pred CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCeeEEEeecCCCCEEEE
Q 000961 225 DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS------EDK--SIRVWDVTKRTGVQTFRREHDRFWIL 296 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs------~dg--~I~vwd~~~~~~~~~~~~~~~~i~~l 296 (1208)
+|.+.-. ..+...++....+....+.+.+++|+|+.++... .|+ .|.+++.. +.. ..+.. ....+.-
T Consensus 328 ~G~l~~~--~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~P 402 (591)
T PRK13616 328 DGSLVSV--DGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRP 402 (591)
T ss_pred CCeEEEe--cCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCc
Confidence 6665443 3333222333333445688999999999887765 233 45555642 222 23322 2247788
Q ss_pred EEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCC
Q 000961 297 ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT 376 (1208)
Q Consensus 297 a~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 376 (1208)
.|+|+|..+++..++.-..+-.... ..+.+.+.++..+.... .+ ...|..+.||||
T Consensus 403 sWspDG~~lw~v~dg~~~~~v~~~~--------------~~gql~~~~vd~ge~~~--~~--------~g~Issl~wSpD 458 (591)
T PRK13616 403 SWSLDADAVWVVVDGNTVVRVIRDP--------------ATGQLARTPVDASAVAS--RV--------PGPISELQLSRD 458 (591)
T ss_pred eECCCCCceEEEecCcceEEEeccC--------------CCceEEEEeccCchhhh--cc--------CCCcCeEEECCC
Confidence 9999988887766432111100000 23456556666654422 11 127999999999
Q ss_pred CCEEEEEEecCCCEEEEEEccCCCCCC--Ccc--ccc-ccCCceEEEEEEeCCcEEEEEcCCCE--EEEEecCCceeeee
Q 000961 377 ENAVLICSDVDGGSYELYVIPKDSIGR--GDS--VQD-AKKGLGGSAIFIARNRFAVLDKSSNQ--VLVKNLKNEVVKKS 449 (1208)
Q Consensus 377 g~~llv~~~~~~g~v~l~~l~~~~~~~--~~~--~~~-~~~~~i~~~~fs~d~~~l~~~~~dg~--I~Iwdl~~~~~~~l 449 (1208)
|..+++..+ +.+.+-.+.....+. +.. .+. .....+.++.|..++.+++... ++. +...++++.....+
T Consensus 459 G~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~-~~~~~v~~v~vDG~~~~~~ 534 (591)
T PRK13616 459 GVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS-DPEHPVWYVNLDGSNSDAL 534 (591)
T ss_pred CCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec-CCCCceEEEecCCcccccc
Confidence 999998775 677764433322232 110 111 2223457899999999775544 333 44444555443333
Q ss_pred cCC---cceEEEEEeCCccEEEEeC
Q 000961 450 ILP---IAADAIFYAGTGNLLCRAE 471 (1208)
Q Consensus 450 ~~~---~~v~~i~~s~dg~~Las~d 471 (1208)
... .++..|+-+++ .++++.+
T Consensus 535 ~~~n~~~~v~~vaa~~~-~iyv~~~ 558 (591)
T PRK13616 535 PSRNLSAPVVAVAASPS-TVYVTDA 558 (591)
T ss_pred CCCCccCceEEEecCCc-eEEEEcC
Confidence 432 27777887764 4555543
No 371
>PRK10115 protease 2; Provisional
Probab=97.05 E-value=1.4 Score=55.87 Aligned_cols=240 Identities=10% Similarity=0.110 Sum_probs=123.9
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC------CcEEE
Q 000961 206 GVNWAAFHPTLPLIVSGADD-----RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED------KSIRV 274 (1208)
Q Consensus 206 ~V~~l~~sp~g~~L~sgs~d-----g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d------g~I~v 274 (1208)
.+..+.++|+|++|+.+.+. ..|++.|+.++... ...+.+ . -..++|++|++.|+....+ ..|+.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 46678899999988876543 35888898877631 111111 1 1468999999877665442 35777
Q ss_pred EeCCCC--eeEEEeecCCCCEEEEEE-eCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEcc--CCc
Q 000961 275 WDVTKR--TGVQTFRREHDRFWILAS-HPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS--TQK 349 (1208)
Q Consensus 275 wd~~~~--~~~~~~~~~~~~i~~la~-sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~--~~~ 349 (1208)
+++.++ +....+.......+...+ +.+++++.....++ .++.+.+++.. ++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~-----------------------~~~~~~l~~~~~~~~~ 260 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA-----------------------TTSEVLLLDAELADAE 260 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC-----------------------ccccEEEEECcCCCCC
Confidence 787776 333334433333442223 33666554433222 34566666642 233
Q ss_pred ceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCccccccc-C-CceEEEEEEeCCcEE
Q 000961 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAK-K-GLGGSAIFIARNRFA 427 (1208)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~-~-~~i~~~~fs~d~~~l 427 (1208)
...+..... + ....+. ..+..+.+.+..+....+|+.++-...+... .+..+ . ..+..+.++ .+.++
T Consensus 261 ~~~~~~~~~-~------~~~~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~i~~~~~~-~~~l~ 329 (686)
T PRK10115 261 PFVFLPRRK-D------HEYSLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWE-ELIPPRENIMLEGFTLF-TDWLV 329 (686)
T ss_pred ceEEEECCC-C------CEEEEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCe-EEECCCCCCEEEEEEEE-CCEEE
Confidence 222221111 1 111222 2234555555544445556655433222211 22233 2 357777776 44566
Q ss_pred EEEcCCCEEEE--EecCCceeeeecC--CcceEEEEEe--CC-ccEEEE-----eCCeEEEEEcCCCe
Q 000961 428 VLDKSSNQVLV--KNLKNEVVKKSIL--PIAADAIFYA--GT-GNLLCR-----AEDRVVIFDLQQRL 483 (1208)
Q Consensus 428 ~~~~~dg~I~I--wdl~~~~~~~l~~--~~~v~~i~~s--~d-g~~Las-----~dg~v~lwdl~~~~ 483 (1208)
++...++.-++ ++..+.....+.. +..+..+.++ ++ +.++++ ..+.++.||+.+++
T Consensus 330 ~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 330 VEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 66665666444 5554445555542 2233333344 33 344443 25899999998764
No 372
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.04 E-value=0.41 Score=55.77 Aligned_cols=271 Identities=10% Similarity=0.106 Sum_probs=149.3
Q ss_pred EEEEeCCCCEEEEEecCCeEEE---EEC-C----CCeEEEEec---ccc--cCEEEEEEEc-----------CCCEEEEE
Q 000961 14 GLSFHSKRPWILASLHSGVIQL---WDY-R----MGTLIDRFD---EHD--GPVRGVHFHK-----------SQPLFVSG 69 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~dg~I~i---Wd~-~----~g~~i~~l~---~h~--~~V~~l~fsp-----------~~~~Lasg 69 (1208)
.++.+|++..||.+..+..+.+ |+. + .++...... .+. ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5789999999999977776655 643 1 122222221 122 4677777643 35689999
Q ss_pred ECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCC---------CEEEEEECCCcEEEEECCC--------------C-
Q 000961 70 GDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY---------PWIVSASDDQTIRIWNWQS--------------R- 125 (1208)
Q Consensus 70 s~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~---------~~l~s~s~Dg~I~iwd~~s--------------~- 125 (1208)
..+|.|++|.- +|..+..-.-|.++|..+.+.... .-|..... +.|.+.|-.+ +
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg~sL~~~L~~~~~~~~~~~ 163 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDGFSLFSVLRACRNQVARGA 163 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEecHHHHHHHHHHHHhhhhhh
Confidence 99999999985 677776666688888888775321 22333332 3343333110 0
Q ss_pred ---------e--EEEEEe-cCCCCEEEEEE--------------------------ee-CCCEEEEEECCCeEEEEECCC
Q 000961 126 ---------T--CISVLT-GHNHYVMCASF--------------------------HP-KEDLVVSASLDQTVRVWDIGA 166 (1208)
Q Consensus 126 ---------~--~i~~l~-~h~~~V~~l~~--------------------------~p-~~~~l~s~s~Dg~V~vwdl~~ 166 (1208)
. ..+.+. ...+.+..+++ ++ ....+++++.+-.+-.+-...
T Consensus 164 ~~~~~~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~~s~~~~~~~i~~G~~P~v~f~~~~e 243 (415)
T PF14655_consen 164 ASGSDSPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYRSSPPRMSRYITVGSSPFVSFYYASE 243 (415)
T ss_pred hcccccCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceeecCCcceEEEEEecCCceEEEEEccC
Confidence 0 000000 01111222211 11 124566677777777776654
Q ss_pred CccccccCC--------------Ccceeeccccc------------cccccccceEEEEEeccCCCeEEEEEcCCCCEEE
Q 000961 167 LRKKTVSPA--------------DDILRLSQMNT------------DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (1208)
Q Consensus 167 ~~~~~~~~~--------------~~~~~~~~~~~------------~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~ 220 (1208)
......... ...+....... .............+....+.+.+++.+|++++.+
T Consensus 244 ~~s~~~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA 323 (415)
T PF14655_consen 244 GSSQPLLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSKREGESICLSPSGRLAA 323 (415)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCCceEEEEEECCCCCEEE
Confidence 332211000 00000000000 0111223345566777778899999999999999
Q ss_pred EEeCCCcEEEEECCCCceeEEEeecCcCCCeEE-EEEccC-----------------CC-EEEEEeCCCcEEEEeCCCCe
Q 000961 221 SGADDRQVKLWRMNETKAWEVDTLRGHMNNVSC-VMFHAK-----------------QD-IIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 221 sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~-l~~sp~-----------------g~-~l~sgs~dg~I~vwd~~~~~ 281 (1208)
+...=|.|.++|+..+.. +..++|..+.=.. +..... .. +++-.-.-|.|-||++++|.
T Consensus 324 ~tDslGRV~LiD~~~~~v--vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 324 VTDSLGRVLLIDVARGIV--VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEcCCCcEEEEECCCChh--hhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEEecCCCC
Confidence 988889999999998875 4444443332111 000000 11 23445667889999999887
Q ss_pred eEEEeec
Q 000961 282 GVQTFRR 288 (1208)
Q Consensus 282 ~~~~~~~ 288 (1208)
.+..+..
T Consensus 402 Rv~a~~v 408 (415)
T PF14655_consen 402 RVAAFNV 408 (415)
T ss_pred EEEEEEe
Confidence 7766653
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.02 E-value=0.081 Score=65.92 Aligned_cols=142 Identities=10% Similarity=0.051 Sum_probs=96.9
Q ss_pred CCEEEEE-ECCCeEEEEECCCCeEEEEEccCCCC-EEEEEEcC-----CCCEEEEEECCCcEEEEECCCC--eEEEEE--
Q 000961 63 QPLFVSG-GDDYKIKVWNYKMHRCLFTLLGHLDY-IRTVQFHH-----EYPWIVSASDDQTIRIWNWQSR--TCISVL-- 131 (1208)
Q Consensus 63 ~~~Lasg-s~Dg~I~vWd~~~~~~~~~l~~h~~~-I~~v~fs~-----d~~~l~s~s~Dg~I~iwd~~s~--~~i~~l-- 131 (1208)
.++|+.. .....|+-.|++.|+.+..+..|... |..++=.. +....+.|-.++.+..||.+-. +++..-
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 45678999999999999999887764 55543221 1234567777889999998842 233211
Q ss_pred -ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEE
Q 000961 132 -TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210 (1208)
Q Consensus 132 -~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 210 (1208)
........|++-+.+| +||+|+.+|.||+||--+.+.+ ..+.+-..+|..+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AK---------------------------T~lp~lG~pI~~i 624 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAK---------------------------TALPGLGDPIIGI 624 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhh---------------------------hcCCCCCCCeeEE
Confidence 1234456777777665 7999999999999995432222 2455667899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEC
Q 000961 211 AFHPTLPLIVSGADDRQVKLWRM 233 (1208)
Q Consensus 211 ~~sp~g~~L~sgs~dg~I~iwd~ 233 (1208)
..+.||++++..+. ..+.+++.
T Consensus 625 Dvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 625 DVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EecCCCcEEEEeec-ceEEEEEE
Confidence 99999999887774 44556654
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0031 Score=73.35 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=70.2
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEE-EEEEEcCCCEEEEEECCCeEEEEECCCCeEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~-~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
...|.-+.|+|.-..+|.+..+|.|.+..+. -+.+.++.-|..+++ +++|.|||++||+|-.||+|++-|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568899999999999999999999999876 777888877888887 99999999999999999999999999877665
Q ss_pred E
Q 000961 88 T 88 (1208)
Q Consensus 88 ~ 88 (1208)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 4
No 375
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.94 E-value=0.11 Score=59.65 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=93.5
Q ss_pred CCEEEEEec---------C-CeEEEEECCCC----eEEEEe--cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe
Q 000961 21 RPWILASLH---------S-GVIQLWDYRMG----TLIDRF--DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1208)
Q Consensus 21 g~~Lasg~~---------d-g~I~iWd~~~g----~~i~~l--~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1208)
.+++++|+. . |.|.++++... ..+..+ ....++|++++-- ++ +|+.+.. +.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g-~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVG-NKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEET-TEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeec-CEEEEEEccCcc
Confidence 578888854 2 89999999884 122222 2568899999876 33 4555443 699999998777
Q ss_pred -EEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEE--ecCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 85 -CLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVL--TGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 85 -~~~~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~l--~~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
....-. .....+.++... +++|+.|.....+.++.++. ...+..+ ......++++.|-++++.++.++.+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 333222 123367777666 45899999888888886543 3323333 2245668999999777899999999999
Q ss_pred EEEECCC
Q 000961 160 RVWDIGA 166 (1208)
Q Consensus 160 ~vwdl~~ 166 (1208)
.++....
T Consensus 197 ~~l~~~~ 203 (321)
T PF03178_consen 197 FVLRYNP 203 (321)
T ss_dssp EEEEE-S
T ss_pred EEEEECC
Confidence 9998753
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.35 Score=54.38 Aligned_cols=231 Identities=12% Similarity=0.095 Sum_probs=127.5
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee-
Q 000961 210 AAFHPTLPL-IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR- 287 (1208)
Q Consensus 210 l~~sp~g~~-L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~- 287 (1208)
-.|.++... +.+--..+.|.-|+..+++. ..+... +.+.++..-..+..|+++.. .+.+++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~---~~~~~p-~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK---RVFPSP-GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce---EEEECC-CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 467777764 44445678888999887663 333322 23344444334444544432 36777766555532222
Q ss_pred ----cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCC
Q 000961 288 ----REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (1208)
Q Consensus 288 ----~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 363 (1208)
....+...+...|+|.+.+..... ++ .....-. ..+.++.++. .+....+..- .
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~----~~--~~~~~~~---------~~G~lyr~~p-~g~~~~l~~~------~ 161 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGY----FD--LGKSEER---------PTGSLYRVDP-DGGVVRLLDD------D 161 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCc----cc--cCccccC---------CcceEEEEcC-CCCEEEeecC------c
Confidence 112456788899999877765432 11 0000000 1233333333 2222222111 0
Q ss_pred CCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC---CCCCC-cccccccCCceEEEEEEeCCcEEEEEcCCC-EEEE
Q 000961 364 LNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD---SIGRG-DSVQDAKKGLGGSAIFIARNRFAVLDKSSN-QVLV 438 (1208)
Q Consensus 364 ~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~---~~~~~-~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg-~I~I 438 (1208)
......++||||++.+.++ .+..+.+.-|.+... ..... ........+..-.++...+|.+.+.+..+| .|.+
T Consensus 162 -~~~~NGla~SpDg~tly~a-DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 162 -LTIPNGLAFSPDGKTLYVA-DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVR 239 (307)
T ss_pred -EEecCceEECCCCCEEEEE-eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEE
Confidence 1256789999999977664 445567777766531 11110 001122334455677778888875544343 8999
Q ss_pred EecCCceeeeecCC-cceEEEEEeCC--ccEEEEe
Q 000961 439 KNLKNEVVKKSILP-IAADAIFYAGT--GNLLCRA 470 (1208)
Q Consensus 439 wdl~~~~~~~l~~~-~~v~~i~~s~d--g~~Las~ 470 (1208)
|+.+++.+..+..| ..+++++|... .++.+++
T Consensus 240 ~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 99999999999988 47888887764 3444554
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.2 Score=53.94 Aligned_cols=207 Identities=10% Similarity=0.129 Sum_probs=133.5
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecC-CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCC
Q 000961 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL 167 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h-~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~ 167 (1208)
+.+-...+.++.|+|+.+.|++......-.||=-.+|+.+.++.-. -+..-.+.+..++.++++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455566999999999999999988888888877889998887521 233456788878888887778899988887654
Q ss_pred ccccccCCCcceeeccccccccccccceEEEEEecc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeec
Q 000961 168 RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTLR 245 (1208)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~-~~~~~~l~ 245 (1208)
....... +..+......+ +.+.-.++|+|....|.++-+-.-+.||...... ...+....
T Consensus 161 t~~~~~~------------------~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~ 222 (316)
T COG3204 161 TTVISAK------------------VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL 222 (316)
T ss_pred ccEEecc------------------ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc
Confidence 3221100 00111111222 6678889999999999998888777777765433 11122222
Q ss_pred Cc-------CCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEeecC---------CCCEEEEEEeCCCCEEEEE
Q 000961 246 GH-------MNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE---------HDRFWILASHPEMNLLAAG 308 (1208)
Q Consensus 246 ~h-------~~~V~~l~~sp-~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~---------~~~i~~la~sp~~~~la~g 308 (1208)
.+ -..|+++.|++ .+.+++-+.+++.+.-.|.. |..+..+... ....-.++..++|++.+++
T Consensus 223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 22 23577888887 45666777777877777754 4434333211 1234567777777777766
Q ss_pred ECCCee
Q 000961 309 HDSGMI 314 (1208)
Q Consensus 309 ~~~gi~ 314 (1208)
-.+...
T Consensus 302 EPnlfy 307 (316)
T COG3204 302 EPNLFY 307 (316)
T ss_pred cCCcce
Confidence 554433
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.14 Score=54.43 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=92.6
Q ss_pred EEEEcCCCCE-EEEEeCCCc-EEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCC-
Q 000961 209 WAAFHPTLPL-IVSGADDRQ-VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKR- 280 (1208)
Q Consensus 209 ~l~~sp~g~~-L~sgs~dg~-I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d-----g~I~vwd~~~~- 280 (1208)
.++++|..+. ++.+-.-|+ ..++|.++.+...+........-.-.=.|||||.+|...-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 4677876543 444555554 567888777653222211111112234799999999876443 67999998743
Q ss_pred eeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeE-eeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCC
Q 000961 281 TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF-KLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRP 359 (1208)
Q Consensus 281 ~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~-~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~ 359 (1208)
..+..+..+.-....+.+.+||+.++... +|+... +..+....+. ...-++.+.|..+|+.+....+...
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvan-GGIethpdfgR~~lNld--------sMePSlvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGIETHPDFGRTELNLD--------SMEPSLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeC-CceecccccCccccchh--------hcCccEEEEeccccchhhhccCchh
Confidence 33455666666678899999999888754 333222 1111100000 0233455667666666555554422
Q ss_pred CCCCCCcCCeEEEEcCCCCEEE
Q 000961 360 GSTSLNQSPRTLSYSPTENAVL 381 (1208)
Q Consensus 360 ~~~~~~~~i~~l~~spdg~~ll 381 (1208)
-+ ...++.+...+||..+.
T Consensus 223 l~---~lSiRHld~g~dgtvwf 241 (366)
T COG3490 223 LR---QLSIRHLDIGRDGTVWF 241 (366)
T ss_pred hh---hcceeeeeeCCCCcEEE
Confidence 22 22788888888887443
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.41 Score=53.85 Aligned_cols=227 Identities=11% Similarity=0.049 Sum_probs=130.3
Q ss_pred EEEEeCCCCEEEE-EecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEcc-
Q 000961 14 GLSFHSKRPWILA-SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG- 91 (1208)
Q Consensus 14 ~lafspdg~~Las-g~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~- 91 (1208)
+-.|.+++..|+- --..+.|.-|+..+|+.. .+. +.+.+.++..-..+..|+++.. -+.+++.+++.....+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 3457777774443 345678888887766432 222 2333445554444445555443 366677666555333211
Q ss_pred ----CCCCEEEEEEcCCCCEEEEEEC---------CCcEEEEECC-CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC-
Q 000961 92 ----HLDYIRTVQFHHEYPWIVSASD---------DQTIRIWNWQ-SRTCISVLTGHNHYVMCASFHPKEDLVVSASLD- 156 (1208)
Q Consensus 92 ----h~~~I~~v~fs~d~~~l~s~s~---------Dg~I~iwd~~-s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D- 156 (1208)
.......+...|+|.+.++... -..=.+|.+. .+..+..+..+-..-+.++|+|+++.++.+...
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1134556778888875554333 0111345444 566666666666666789999999877777654
Q ss_pred CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCC
Q 000961 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-QVKLWRMNE 235 (1208)
Q Consensus 157 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg-~I~iwd~~~ 235 (1208)
+.|.-|++....... . ............+..-.++...+|.+.+++...| .|.+|+..
T Consensus 185 ~~i~r~~~d~~~g~~-----------------~---~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 185 NRIHRYDLDPATGPI-----------------G---GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred CeEEEEecCcccCcc-----------------C---CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 778888775310000 0 0011222323445566788888888776555554 89999998
Q ss_pred CceeEEEeecCcCCCeEEEEEc-cCCCEEEEEe
Q 000961 236 TKAWEVDTLRGHMNNVSCVMFH-AKQDIIVSNS 267 (1208)
Q Consensus 236 ~~~~~~~~l~~h~~~V~~l~~s-p~g~~l~sgs 267 (1208)
++. +....-....+++++|- |+.+.|.+.+
T Consensus 244 G~l--~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 244 GKL--LGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CcE--EEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 665 44444444677888885 3445444433
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.44 Score=50.84 Aligned_cols=249 Identities=12% Similarity=0.096 Sum_probs=139.2
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCc-EEEEECCCCeEEEEEecCC--CCEEEEEEeeCCCEEEEEECC-
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQT-IRIWNWQSRTCISVLTGHN--HYVMCASFHPKEDLVVSASLD- 156 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~-I~iwd~~s~~~i~~l~~h~--~~V~~l~~~p~~~~l~s~s~D- 156 (1208)
.|+++.... -...-..|+|+|..+ -++.+-.-|+ ..++|.++++...++.... +.--.-.|||+|.+|+..-.|
T Consensus 57 aGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 57 AGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred CCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 355554432 233445688888766 3455555554 5688998887766654322 223345699999988876543
Q ss_pred ----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC--------
Q 000961 157 ----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD-------- 224 (1208)
Q Consensus 157 ----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~-------- 224 (1208)
|.|-|||.+..-.. .-.+..|.-+-..+.|.+||+.++.+..
T Consensus 136 d~~rGViGvYd~r~~fqr--------------------------vgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdf 189 (366)
T COG3490 136 DPNRGVIGVYDAREGFQR--------------------------VGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDF 189 (366)
T ss_pred CCCCceEEEEecccccce--------------------------ecccccCCcCcceeEEecCCcEEEEeCCceeccccc
Confidence 67899998742211 1134556666778899999998887642
Q ss_pred ----------CCcEEEEECCCCceeEEEeec--CcCCCeEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCeeEEEee
Q 000961 225 ----------DRQVKLWRMNETKAWEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKS-----IRVWDVTKRTGVQTFR 287 (1208)
Q Consensus 225 ----------dg~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~~sp~g~~l~sgs~dg~-----I~vwd~~~~~~~~~~~ 287 (1208)
.-++.+.|..++...+..++. .+...|..+...+||...+.+-..|- -.+=-...++.+..+.
T Consensus 190 gR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~ 269 (366)
T COG3490 190 GRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLD 269 (366)
T ss_pred CccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccC
Confidence 123444555555554444554 45567888888888776655443331 1111112333333332
Q ss_pred cCC-------CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCC
Q 000961 288 REH-------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG 360 (1208)
Q Consensus 288 ~~~-------~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1208)
... .-+-+++.+.+..+++..+. ..+...+||..+|..+....+..
T Consensus 270 ~pee~~~~~anYigsiA~n~~~glV~lTSP-------------------------~GN~~vi~da~tG~vv~~a~l~d-- 322 (366)
T COG3490 270 LPEEQTAAFANYIGSIAANRRDGLVALTSP-------------------------RGNRAVIWDAATGAVVSEAALPD-- 322 (366)
T ss_pred CCHHHHHHHHhhhhheeecccCCeEEEecC-------------------------CCCeEEEEEcCCCcEEecccccc--
Confidence 221 12444555554444444433 45667799999998766544432
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
...++ +...-++++++ .|.+.+|.
T Consensus 323 -------aaGva--~~~~gf~vssg--~G~~~~~s 346 (366)
T COG3490 323 -------AAGVA--AAKGGFAVSSG--QGRIIFYS 346 (366)
T ss_pred -------cccce--eccCceEEecC--CceEEecc
Confidence 22232 33333455443 46777764
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.006 Score=71.05 Aligned_cols=92 Identities=8% Similarity=0.120 Sum_probs=75.1
Q ss_pred cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEE-EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 000961 52 GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIR-TVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV 130 (1208)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~-~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~ 130 (1208)
..|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 457789999999999999999999999987 778888887777777 999999999999999999999999998876655
Q ss_pred Ee-cCCCCEEEEEEe
Q 000961 131 LT-GHNHYVMCASFH 144 (1208)
Q Consensus 131 l~-~h~~~V~~l~~~ 144 (1208)
.. .-...|.++.|.
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 21 123345555554
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.70 E-value=0.11 Score=63.81 Aligned_cols=189 Identities=11% Similarity=0.027 Sum_probs=103.2
Q ss_pred cCEEEEEEEcCCCEEEEEE------CCC--eEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC-CcEEEE--
Q 000961 52 GPVRGVHFHKSQPLFVSGG------DDY--KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-QTIRIW-- 120 (1208)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs------~Dg--~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D-g~I~iw-- 120 (1208)
..+...+++|+|..++... .|+ .|.+++.. +.. ..+.. ....+.-.|+|+|.+|.+.++. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999877665 244 45555542 222 23321 2237889999999988877643 222333
Q ss_pred ---------ECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE---ECCCCccccccCCCcceeeccccccc
Q 000961 121 ---------NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW---DIGALRKKTVSPADDILRLSQMNTDL 188 (1208)
Q Consensus 121 ---------d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw---dl~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1208)
++..+.... ...+.|..+.|+|||..++... +|.|.+- ....+.....
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~---------------- 486 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALT---------------- 486 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeec----------------
Confidence 333332221 2345799999999999888876 5677663 2222210000
Q ss_pred cccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecC--cCCCeEEEEEccCCCEEEEE
Q 000961 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG--HMNNVSCVMFHAKQDIIVSN 266 (1208)
Q Consensus 189 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~--h~~~V~~l~~sp~g~~l~sg 266 (1208)
.......+-...+..+.|.+++.++ ++..++...+|.+.-.... ...+.. ...++.+++=+++ .++..
T Consensus 487 ------~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 487 ------NPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred ------ccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEE
Confidence 0011112223345788999998854 5555554445544322210 111122 2456667766653 35555
Q ss_pred eCCCcEE
Q 000961 267 SEDKSIR 273 (1208)
Q Consensus 267 s~dg~I~ 273 (1208)
..+|.+.
T Consensus 557 ~~~g~~~ 563 (591)
T PRK13616 557 DARAVLQ 563 (591)
T ss_pred cCCceEE
Confidence 5565333
No 383
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.68 E-value=0.96 Score=53.28 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=71.6
Q ss_pred ccCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCC-----ceeEEEeecC-cCC--CeEEEEEccCCCEEEEEeCC
Q 000961 202 GHDRGVNWAAFHPT----LPLIVSGADDRQVKLWRMNET-----KAWEVDTLRG-HMN--NVSCVMFHAKQDIIVSNSED 269 (1208)
Q Consensus 202 ~h~~~V~~l~~sp~----g~~L~sgs~dg~I~iwd~~~~-----~~~~~~~l~~-h~~--~V~~l~~sp~g~~l~sgs~d 269 (1208)
|.-..|..+.|.|- .+.++.......|.+|.+... +....++..- ..- -...+.|||....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 33455788889884 445666666788999987532 2211111110 011 23467999999988877766
Q ss_pred CcEEEEeCCCC-eeEEEeecCCCCEEEEEEeCCCCEEEEEECCCee--eEee
Q 000961 270 KSIRVWDVTKR-TGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI--VFKL 318 (1208)
Q Consensus 270 g~I~vwd~~~~-~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~--v~~l 318 (1208)
..-.++++... ..+..--...+.|.+.+|.+||+.|+++-.+.+. +|+-
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 54455555432 2222222466789999999999998877666654 5543
No 384
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.67 E-value=0.0041 Score=44.75 Aligned_cols=39 Identities=36% Similarity=0.709 Sum_probs=34.7
Q ss_pred CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEE
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1208)
++.+..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455667778999999999999999999999999999996
No 385
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.66 E-value=0.92 Score=52.92 Aligned_cols=107 Identities=9% Similarity=0.132 Sum_probs=68.7
Q ss_pred EEEEEcCCCEEEEEECCCeEEE---EECC-----CCeEEEEEcc---CC--CCEEEEEEcC-----------CCCEEEEE
Q 000961 56 GVHFHKSQPLFVSGGDDYKIKV---WNYK-----MHRCLFTLLG---HL--DYIRTVQFHH-----------EYPWIVSA 111 (1208)
Q Consensus 56 ~l~fsp~~~~Lasgs~Dg~I~v---Wd~~-----~~~~~~~l~~---h~--~~I~~v~fs~-----------d~~~l~s~ 111 (1208)
.++.+|++.+||.+..+..+.+ |+.. .+.......+ +. ..|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999987776665 6431 1122222211 21 4677776643 45689999
Q ss_pred ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC---------CEEEEEECCCeEEEEEC
Q 000961 112 SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE---------DLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 112 s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~---------~~l~s~s~Dg~V~vwdl 164 (1208)
..+|.|++|.. +|..+..-.-|..+|..+...... ..|..... +.|.+.|-
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg 145 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDG 145 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEec
Confidence 99999999995 666666556688888888775421 34444444 56666663
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.65 E-value=1.1 Score=51.49 Aligned_cols=213 Identities=8% Similarity=0.092 Sum_probs=98.0
Q ss_pred CCCEEEEEe-cCCeEEEEECCC----CeEEEEecc---cc----cCEEEEEEEcCCCEEEEEE------CCCeEEEEECC
Q 000961 20 KRPWILASL-HSGVIQLWDYRM----GTLIDRFDE---HD----GPVRGVHFHKSQPLFVSGG------DDYKIKVWNYK 81 (1208)
Q Consensus 20 dg~~Lasg~-~dg~I~iWd~~~----g~~i~~l~~---h~----~~V~~l~fsp~~~~Lasgs------~Dg~I~vWd~~ 81 (1208)
+.++|++.+ .++.|.|.|+.+ -++.+.++. +. ..-..+.--|+|..++|+- .-|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 567777766 678999999874 355555542 11 1112233347898888862 23568888888
Q ss_pred CCeEEEEEccC---CCCEEEEEEcCCCCEEEEEEC--------------------CCcEEEEECCCCeEEEEEecCCC--
Q 000961 82 MHRCLFTLLGH---LDYIRTVQFHHEYPWIVSASD--------------------DQTIRIWNWQSRTCISVLTGHNH-- 136 (1208)
Q Consensus 82 ~~~~~~~l~~h---~~~I~~v~fs~d~~~l~s~s~--------------------Dg~I~iwd~~s~~~i~~l~~h~~-- 136 (1208)
+.+........ ...-..+.|.|..+.++|+.. ..++.+||+.+++.++++.--..
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 87777776543 234567888998888888753 35899999999999999874432
Q ss_pred CEEEEEEeeC--CCE-EEEEECCCeEEEEEC-CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEE
Q 000961 137 YVMCASFHPK--EDL-VVSASLDQTVRVWDI-GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212 (1208)
Q Consensus 137 ~V~~l~~~p~--~~~-l~s~s~Dg~V~vwdl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 212 (1208)
.+..+.|..+ ..+ ++.+-...+|..|-- ..++-.. .....+......-+.-.. +...+..-..-|+.+.+
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a----~kVi~ip~~~v~~~~lp~--ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA----EKVIDIPAKKVEGWILPE--MLKPFGAVPPLITDILI 319 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE----EEEEEE--EE--SS---G--GGGGG-EE------EEE
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee----eEEEECCCcccCcccccc--cccccccCCCceEeEEE
Confidence 3556677543 333 333334555555533 2221110 000000000000000000 00000001345788999
Q ss_pred cCCCCEEEEEe-CCCcEEEEECCCCce
Q 000961 213 HPTLPLIVSGA-DDRQVKLWRMNETKA 238 (1208)
Q Consensus 213 sp~g~~L~sgs-~dg~I~iwd~~~~~~ 238 (1208)
|.|.++|.+.+ .+|.|+.||+++...
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 99999887776 589999999988654
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.027 Score=69.59 Aligned_cols=101 Identities=18% Similarity=0.290 Sum_probs=76.1
Q ss_pred CCCEEEEEecCCeEEEEECCCC-eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEE
Q 000961 20 KRPWILASLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRT 98 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g-~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~ 98 (1208)
.+.+++.|++.|.|...|+... .....-..-.++|++++|+.+|..++.|-.+|.|.+||..+++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4667899999999999886442 111223345789999999999999999999999999999999988888766655444
Q ss_pred E---EEcCCCCEEEEEECCCcEEEEEC
Q 000961 99 V---QFHHEYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 99 v---~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1208)
+ .+..++..++++...|. +|++
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 44455667788777776 5654
No 388
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.50 E-value=0.19 Score=46.31 Aligned_cols=100 Identities=12% Similarity=0.181 Sum_probs=70.2
Q ss_pred EEEEEEEc---CC-CEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 000961 54 VRGVHFHK---SQ-PLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1208)
Q Consensus 54 V~~l~fsp---~~-~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1208)
|+++++.. +| +.|++|++|..|+||+- ...+..+. -.+.|+++.-... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 66777754 22 58999999999999984 36667776 4556777777666 56899999999999984 33344
Q ss_pred EEecCCCCEEEEEEee-CC---CEEEEEECCCeEE
Q 000961 130 VLTGHNHYVMCASFHP-KE---DLVVSASLDQTVR 160 (1208)
Q Consensus 130 ~l~~h~~~V~~l~~~p-~~---~~l~s~s~Dg~V~ 160 (1208)
..+.. +.++++.+.. ++ ..|++|=.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44433 3466776654 22 4788888888764
No 389
>PRK10115 protease 2; Provisional
Probab=96.46 E-value=4.4 Score=51.48 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=69.0
Q ss_pred cCEEEEEEEcCCCEEEEEEC-----CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC------CcEEEE
Q 000961 52 GPVRGVHFHKSQPLFVSGGD-----DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD------QTIRIW 120 (1208)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs~-----Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D------g~I~iw 120 (1208)
-.+..+.|||++++|+.+.+ ...|++-|+.++..+........ ..++|++|++.|+....+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34777899999998887643 34689999988864433221222 569999999866655432 367888
Q ss_pred ECCCC--eEEEEEecCCCCEEEEEEee-CCCEEEEEEC---CCeEEEEEC
Q 000961 121 NWQSR--TCISVLTGHNHYVMCASFHP-KEDLVVSASL---DQTVRVWDI 164 (1208)
Q Consensus 121 d~~s~--~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~---Dg~V~vwdl 164 (1208)
++.++ +-...+........-..+.+ ++++++..+. ++.+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877 33334443333333223333 6776665443 346788875
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.45 E-value=2.2 Score=47.84 Aligned_cols=185 Identities=16% Similarity=0.197 Sum_probs=89.8
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEE
Q 000961 219 IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS 298 (1208)
Q Consensus 219 L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~ 298 (1208)
....+..|.| ....+.++.|... .....+.+..+..+++|+++++++......-||--...-...-+....++..+.|
T Consensus 117 ~~l~~~~G~i-y~T~DgG~tW~~~-~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf 194 (302)
T PF14870_consen 117 AELAGDRGAI-YRTTDGGKTWQAV-VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF 194 (302)
T ss_dssp EEEEETT--E-EEESSTTSSEEEE-E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE
T ss_pred EEEEcCCCcE-EEeCCCCCCeeEc-ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhcee
Confidence 3334445543 2234455566433 3455677899999999999988877666678875433333333445678999999
Q ss_pred eCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCC
Q 000961 299 HPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTEN 378 (1208)
Q Consensus 299 sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 378 (1208)
.|++.+..++ .++.+.+.- ......-|... ..++...+ ..+..++|.+++.
T Consensus 195 ~~~~~lw~~~-~Gg~~~~s~-----------------~~~~~~~w~~~------~~~~~~~~-----~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 195 SPDGNLWMLA-RGGQIQFSD-----------------DPDDGETWSEP------IIPIKTNG-----YGILDLAYRPPNE 245 (302)
T ss_dssp -TTS-EEEEE-TTTEEEEEE------------------TTEEEEE---------B-TTSS-------S-EEEEEESSSS-
T ss_pred cCCCCEEEEe-CCcEEEEcc-----------------CCCCccccccc------cCCcccCc-----eeeEEEEecCCCC
Confidence 9998887765 333322211 12333334321 11111111 1578899999877
Q ss_pred EEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEE
Q 000961 379 AVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVK 439 (1208)
Q Consensus 379 ~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iw 439 (1208)
..++.++ |.+ ++..+.....+..............+.|.++.+-++.+. +|.|.-|
T Consensus 246 ~wa~gg~---G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~-~G~ll~~ 301 (302)
T PF14870_consen 246 IWAVGGS---GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ-DGVLLRY 301 (302)
T ss_dssp EEEEEST---T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S-TTEEEEE
T ss_pred EEEEeCC---ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC-CcEEEEe
Confidence 5554332 333 344454444332212234455678899998888888887 7876654
No 391
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.11 Score=63.63 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=42.2
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcC
Q 000961 721 MGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELG 770 (1208)
Q Consensus 721 ~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~ 770 (1208)
..+..+|+.-+=...++..|.++|++++++..+++-|..-....+++++-
T Consensus 472 ~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~ 521 (1666)
T KOG0985|consen 472 TLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLK 521 (1666)
T ss_pred hHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHH
Confidence 44666788888999999999999999999999999998887777777754
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.42 E-value=0.67 Score=50.94 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=96.2
Q ss_pred CeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEE
Q 000961 250 NVSCVMFHAKQDIIVSNS---EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFA 326 (1208)
Q Consensus 250 ~V~~l~~sp~g~~l~sgs---~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s 326 (1208)
.+.+.+++++++.++... ....++++.. +....... ....+..-+|++++.+.++.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~-------------- 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSG-------------- 87 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCC--------------
Confidence 688999999999887766 3334555543 33322222 333677788888887776655322
Q ss_pred ecCCEEEEEeCCeEEEE-EccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEe-cCCCEEEEEEccCCCCC--
Q 000961 327 VSGDSLFYAKDRFLRYY-EFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD-VDGGSYELYVIPKDSIG-- 402 (1208)
Q Consensus 327 ~~~~~L~~~~d~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~-~~~g~v~l~~l~~~~~~-- 402 (1208)
..+++ +..++... ...+..... ...|+.+.+||||..+++... ..++.+.+-.+.....+
T Consensus 88 ------------~~~~~~~~~~g~~~-~~~v~~~~~---~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~ 151 (253)
T PF10647_consen 88 ------------GVRVVRDSASGTGE-PVEVDWPGL---RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP 151 (253)
T ss_pred ------------ceEEEEecCCCcce-eEEeccccc---CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc
Confidence 22222 22222221 112221111 117899999999999988763 23477777766655444
Q ss_pred -CCccc---ccccCCceEEEEEEeCCcEEEEEcCCCE-EEE-EecCCceeeee
Q 000961 403 -RGDSV---QDAKKGLGGSAIFIARNRFAVLDKSSNQ-VLV-KNLKNEVVKKS 449 (1208)
Q Consensus 403 -~~~~~---~~~~~~~i~~~~fs~d~~~l~~~~~dg~-I~I-wdl~~~~~~~l 449 (1208)
....+ .......+.++.|.+++.+++.+...+. +.. ....+.....+
T Consensus 152 ~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 152 RRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred ceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCccccc
Confidence 11111 1123457889999999999888765443 333 44555444444
No 393
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.35 E-value=0.01 Score=42.60 Aligned_cols=39 Identities=38% Similarity=0.623 Sum_probs=34.8
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
+++...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778999999999999999999999999999996
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.32 E-value=0.45 Score=57.98 Aligned_cols=107 Identities=11% Similarity=0.135 Sum_probs=72.7
Q ss_pred eEEEEEEeCCcEEEEEcCCCEEEEEecCCcee---eeecCCcceEEEEEe--CCccEEEE-e-CCeEEEEEc--------
Q 000961 415 GGSAIFIARNRFAVLDKSSNQVLVKNLKNEVV---KKSILPIAADAIFYA--GTGNLLCR-A-EDRVVIFDL-------- 479 (1208)
Q Consensus 415 i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~---~~l~~~~~v~~i~~s--~dg~~Las-~-dg~v~lwdl-------- 479 (1208)
..-+.-|.-++..+..+...++.|||..+..+ ..+..+..|.++.|. |+|+.+++ + ++.|.+|.-
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 33344455677777777678899999984432 233335588998865 56776644 3 788888742
Q ss_pred -CCCeEEEEEeC-----CCeeEEEECCCCCEEEEEeCCeEEEEecCccc
Q 000961 480 -QQRLVLGDLQT-----PFVKYVVWSNDMESVALLSKHAIIIASKKLVH 522 (1208)
Q Consensus 480 -~~~~~l~~~~~-----~~v~~v~ws~dg~~la~~s~~~i~i~~~~~~~ 522 (1208)
.+...+..+.. .+|....|-+||. +++++++.++|+++..+.
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk~~~~ 159 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDKWLDT 159 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECCCcCc
Confidence 12234444433 6789999999987 557889999999887773
No 395
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.30 E-value=0.065 Score=66.74 Aligned_cols=141 Identities=11% Similarity=0.175 Sum_probs=99.5
Q ss_pred CEEEEE-ecCCeEEEEECCCCeEEEEecccccC-EEEEEEEc-----CCCEEEEEECCCeEEEEECCCC--eEEEEE---
Q 000961 22 PWILAS-LHSGVIQLWDYRMGTLIDRFDEHDGP-VRGVHFHK-----SQPLFVSGGDDYKIKVWNYKMH--RCLFTL--- 89 (1208)
Q Consensus 22 ~~Lasg-~~dg~I~iWd~~~g~~i~~l~~h~~~-V~~l~fsp-----~~~~Lasgs~Dg~I~vWd~~~~--~~~~~l--- 89 (1208)
+.|+.. .....|+-.|+..|+.+..++.|... |..++=.. +..--..|-.+..+..||.+-. +++..-
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 344433 34578999999999999999877654 55554321 1223556777789999998743 233211
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEEC
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl 164 (1208)
-.......|++-+.+| +||+|+.+|.||+||--..+....+.+-..+|..+..+.||++|+..+ +..+.+++.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1234467888888877 799999999999999544343445567789999999999999988776 667888875
No 396
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.29 E-value=0.15 Score=47.05 Aligned_cols=100 Identities=12% Similarity=0.177 Sum_probs=68.5
Q ss_pred EEEEEEeC-CC---CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE
Q 000961 12 VKGLSFHS-KR---PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 12 V~~lafsp-dg---~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
|+++++.. ++ +-|++|+.|..|++|+ ....+.++..+. .|+++.-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETD-KVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEeccc-ceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 77888766 33 5899999999999998 557777776544 5666666555 579999999999999853 3334
Q ss_pred EEccCCCCEEEEEEcC-C--C-CEEEEEECCCcEE
Q 000961 88 TLLGHLDYIRTVQFHH-E--Y-PWIVSASDDQTIR 118 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~-d--~-~~l~s~s~Dg~I~ 118 (1208)
..+... .+.++.+.. + | +-|++|-.+|.|-
T Consensus 76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444322 355555543 2 2 2678887777664
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.68 Score=50.04 Aligned_cols=174 Identities=10% Similarity=0.072 Sum_probs=115.1
Q ss_pred ecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccC-CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 000961 47 FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGH-LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125 (1208)
Q Consensus 47 l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h-~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~ 125 (1208)
+.+-...|+++.|+|+.+.|.+......-.||=..+|+.+.++.-. -.....+.+..++.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455556999999999999999888888888888889999887421 223456788888888888778888888877654
Q ss_pred eEEEEE---------ecC-CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 126 TCISVL---------TGH-NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 126 ~~i~~l---------~~h-~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
..+... ..+ +...-.++|.|.+..|+.+-+-.-+.+|.+.........+ ....
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~------~~~~----------- 223 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH------ASLD----------- 223 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc------cccC-----------
Confidence 222111 122 5667889999999999998888878888765322110000 0000
Q ss_pred EEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc
Q 000961 196 VKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
......-.-..|.++.|++ .+.+++.+.+++.+.-.|.....
T Consensus 224 ~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 224 PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred cccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 0000000123467788886 45677777778888777776654
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.068 Score=66.24 Aligned_cols=103 Identities=13% Similarity=0.219 Sum_probs=77.4
Q ss_pred cCCCEEEEEECCCeEEEEECCCC-eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEE
Q 000961 61 KSQPLFVSGGDDYKIKVWNYKMH-RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVM 139 (1208)
Q Consensus 61 p~~~~Lasgs~Dg~I~vWd~~~~-~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~ 139 (1208)
-.+..++.|++.|.|-..|+... ++...-..-.++|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+.+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 34557888999899988887642 11111122456899999999999999999999999999999999999987777666
Q ss_pred EEEE---eeCCCEEEEEECCCeEEEEECC
Q 000961 140 CASF---HPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 140 ~l~~---~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
.+-+ ..++..++++...|. +|.+.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 5544 445567888887776 66653
No 399
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.11 E-value=2.2 Score=46.58 Aligned_cols=224 Identities=14% Similarity=0.079 Sum_probs=126.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCC------CC-eeEEEeec-----CCCCEEEEEEeCCCCEEEEEECCCeeeE
Q 000961 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVT------KR-TGVQTFRR-----EHDRFWILASHPEMNLLAAGHDSGMIVF 316 (1208)
Q Consensus 249 ~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~------~~-~~~~~~~~-----~~~~i~~la~sp~~~~la~g~~~gi~v~ 316 (1208)
.+-+.++++|.+.+-++....+...+||.. .. ..+.++.. .....+.+.|+....+.+++...
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~----- 97 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI----- 97 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-----
Confidence 456789999999888888888899999986 11 12223331 12245666666655544433210
Q ss_pred eeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc---eeeEeecCCCCCCCCcCCeEEEEcCC--CCEEEEEEecCCCEE
Q 000961 317 KLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD---TQVIPIRRPGSTSLNQSPRTLSYSPT--ENAVLICSDVDGGSY 391 (1208)
Q Consensus 317 ~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~spd--g~~llv~~~~~~g~v 391 (1208)
+-....|+...+++|.-|...-+.. .....+....... --+.+++... +.+ +...+...++|
T Consensus 98 ---------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~ga---vYkGLAi~~~~~~~~-LYaadF~~g~I 164 (336)
T TIGR03118 98 ---------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGN---VYKGLAVGPTGGGDY-LYAANFRQGRI 164 (336)
T ss_pred ---------ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcc---eeeeeEEeecCCCce-EEEeccCCCce
Confidence 0011234555899999999654333 2223333211101 3344555433 444 44455578899
Q ss_pred EEEEccCCCCC---CCccc-ccccCC--ceE------EEEEE---eCCcEEEEEcCCCEEEEEecCCceeeeecCCc---
Q 000961 392 ELYVIPKDSIG---RGDSV-QDAKKG--LGG------SAIFI---ARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI--- 453 (1208)
Q Consensus 392 ~l~~l~~~~~~---~~~~~-~~~~~~--~i~------~~~fs---~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~--- 453 (1208)
.+|+-.-.... ....+ +..... .|. -+.|. ++.+.-+.+...|.|-++|+.+..++++....
T Consensus 165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LN 244 (336)
T TIGR03118 165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLN 244 (336)
T ss_pred EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCccc
Confidence 99975433210 00000 000000 010 11111 22222233334578999999999999886554
Q ss_pred ceEEEEEeC------CccEEEE--eCCeEEEEEcCCCeEEEEEeC
Q 000961 454 AADAIFYAG------TGNLLCR--AEDRVVIFDLQQRLVLGDLQT 490 (1208)
Q Consensus 454 ~v~~i~~s~------dg~~Las--~dg~v~lwdl~~~~~l~~~~~ 490 (1208)
....|+..| .|.+|+- +||+|..||..+|+.+..+..
T Consensus 245 aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 245 APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 556666655 4778876 699999999999998887765
No 400
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=96.06 E-value=5.3 Score=48.56 Aligned_cols=44 Identities=11% Similarity=-0.126 Sum_probs=32.2
Q ss_pred HHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHc
Q 000961 726 NALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 726 ~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
+..-.+.+.+|...|.--|.+.+|...+++.++|.++..|+.+-
T Consensus 931 ~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~ 974 (1243)
T COG5290 931 NLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQE 974 (1243)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 34445667777777777788888888888888888887777663
No 401
>PHA02713 hypothetical protein; Provisional
Probab=96.06 E-value=0.31 Score=60.20 Aligned_cols=67 Identities=7% Similarity=0.028 Sum_probs=39.8
Q ss_pred CCCEEEEEeCC------CcEEEEECCC-CceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCeeE
Q 000961 215 TLPLIVSGADD------RQVKLWRMNE-TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK--SIRVWDVTKRTGV 283 (1208)
Q Consensus 215 ~g~~L~sgs~d------g~I~iwd~~~-~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg--~I~vwd~~~~~~~ 283 (1208)
++++.+.|+.+ ..+..||..+ .+...+..+.........+.+ ++.+.++|+.+| ++-.||..+.+-.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 45666777654 2467899887 453333444433333333333 678888999888 6667776655443
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.04 E-value=7 Score=49.79 Aligned_cols=111 Identities=10% Similarity=0.029 Sum_probs=75.0
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEeccccc--------CEEEEEEEc----------------CCCEEEEEECCCeEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDG--------PVRGVHFHK----------------SQPLFVSGGDDYKIK 76 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~--------~V~~l~fsp----------------~~~~Lasgs~Dg~I~ 76 (1208)
+..|.+++.++.|.-.|..+|+.+-++..... ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55777788889999999999999887753221 123444432 234788899999999
Q ss_pred EEECCCCeEEEEEccCCCCEE-------------EEEEcC--CCCEEEEEEC----------CCcEEEEECCCCeEEEEE
Q 000961 77 VWNYKMHRCLFTLLGHLDYIR-------------TVQFHH--EYPWIVSASD----------DQTIRIWNWQSRTCISVL 131 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~-------------~v~fs~--d~~~l~s~s~----------Dg~I~iwd~~s~~~i~~l 131 (1208)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++++. +|.|+-+|..+|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877632 11110 011111 1235666643 688999999999999887
Q ss_pred e
Q 000961 132 T 132 (1208)
Q Consensus 132 ~ 132 (1208)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 403
>PRK13684 Ycf48-like protein; Provisional
Probab=96.04 E-value=3.6 Score=47.28 Aligned_cols=268 Identities=9% Similarity=0.041 Sum_probs=132.5
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECC-CCeEEEEe----cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYR-MGTLIDRF----DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~-~g~~i~~l----~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1208)
...+.+|+|.....-+++| ++|.| |... .|+.=... .....++.++.|.++ ..+++ +..+.|..- -+.|
T Consensus 45 ~~~l~~v~F~d~~~g~avG-~~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVG-SNRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEE-CCCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 5578999998666666666 46654 3322 23222211 122345778888754 34444 344443321 1112
Q ss_pred eEEEEEc---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 84 RCLFTLL---GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 84 ~~~~~l~---~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
+.-..+. ........+....++..+ .++..|.|..=+ +.|+.-..+ ..-...+.++.+.|++.+++++. .|.+
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i 195 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNF 195 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceE
Confidence 2111111 011111222222222222 333344443222 222222211 22345688899999876665554 5554
Q ss_pred EE-EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 160 RV-WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 160 ~v-wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
.. +|-.. +. ...........++.+.+.++++.++++ ..|.+.+=..+.+..
T Consensus 196 ~~s~~~gg-~t--------------------------W~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 196 YSTWEPGQ-TA--------------------------WTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred EEEcCCCC-Ce--------------------------EEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 32 22111 10 111122334678899999998877665 467664333555555
Q ss_pred eEEEeec--CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec---CCCCEEEEEEeCCCCEEEEEECCCe
Q 000961 239 WEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR---EHDRFWILASHPEMNLLAAGHDSGM 313 (1208)
Q Consensus 239 ~~~~~l~--~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~---~~~~i~~la~sp~~~~la~g~~~gi 313 (1208)
|...... .....+.++.+.|++..++ ++.+|.+. .....++.-+..+. .....+.+.+..+++.+++|..+-+
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 4432221 1224578899999877555 44567554 34444444333321 2235777888888888887765544
Q ss_pred ee
Q 000961 314 IV 315 (1208)
Q Consensus 314 ~v 315 (1208)
..
T Consensus 326 l~ 327 (334)
T PRK13684 326 LR 327 (334)
T ss_pred EE
Confidence 43
No 404
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=2.9 Score=45.10 Aligned_cols=185 Identities=11% Similarity=0.119 Sum_probs=104.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE-CCCeeeEeeCCCcc---
Q 000961 248 MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH-DSGMIVFKLERERP--- 323 (1208)
Q Consensus 248 ~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~-~~gi~v~~l~~~~~--- 323 (1208)
.+-+..+.++ +++...+..+.-++|.|+.+.........-+..-..-.|.-.|++..+.. ++++.+.++.....
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 3445566666 56677777777899999987654333222111112233444567666555 88888888876532
Q ss_pred ------------eEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCE
Q 000961 324 ------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGS 390 (1208)
Q Consensus 324 ------------~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~ 390 (1208)
...++|++-+.+ .++-+.+.|+.......++.....+. .+.++..+++-.++++.. .-
T Consensus 164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~-----g~~sv~vsdnr~y~vvy~----eg 234 (370)
T COG5276 164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP-----GTYSVSVSDNRAYLVVYD----EG 234 (370)
T ss_pred eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC-----ceEEEEecCCeeEEEEcc----cc
Confidence 445678888888 99999999998865544443333221 677777777665554432 23
Q ss_pred EEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCc
Q 000961 391 YELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE 444 (1208)
Q Consensus 391 v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~ 444 (1208)
+.+-+.++......+...+... .+.-..|.-.++++.....+.-+.+-|+++.
T Consensus 235 vlivd~s~~ssp~~~gsyet~~-p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYETSN-PVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eEEEecCCCCCceEeeccccCC-cccccceecccceeeeeccccCceeEeccCC
Confidence 4555655544333221111111 1111133334555555555566666666643
No 405
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.98 E-value=3.2 Score=45.35 Aligned_cols=237 Identities=14% Similarity=0.139 Sum_probs=137.3
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECC------CC-eEEEEEcc-----CCCCEEEEEEcCCCC------------EEE
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYK------MH-RCLFTLLG-----HLDYIRTVQFHHEYP------------WIV 109 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~------~~-~~~~~l~~-----h~~~I~~v~fs~d~~------------~l~ 109 (1208)
-..|+|+|.+.+-++....+...+||.. .. ..+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4789999999998888888999999986 12 23344432 234677788875433 367
Q ss_pred EEECCCcEEEEECCCCeE-----EEEEe-cCCCCE-EEEEEeeC--CCEEEEEE-CCCeEEEEECCCCccccccCCCcce
Q 000961 110 SASDDQTIRIWNWQSRTC-----ISVLT-GHNHYV-MCASFHPK--EDLVVSAS-LDQTVRVWDIGALRKKTVSPADDIL 179 (1208)
Q Consensus 110 s~s~Dg~I~iwd~~s~~~-----i~~l~-~h~~~V-~~l~~~p~--~~~l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~ 179 (1208)
.+++||+|.-|+..-+.. ...+. ...+.| ..+++... +++|+.+. ..++|.|+|-.-.+... +. .+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~g--~F 180 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--PG--SF 180 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--CC--Cc
Confidence 789999999998642222 12222 112333 34555433 45665554 57899999854322110 00 00
Q ss_pred eeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEcc-
Q 000961 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA- 258 (1208)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp- 258 (1208)
.-..... -+.. .....-+..--|+...-.++...=+.|..-|.|-+||....-.. .....+.-+..+.++..|
T Consensus 181 ~DP~iPa-gyAP----FnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~-r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 181 IDPALPA-GYAP----FNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLR-RVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred cCCCCCC-CCCC----cceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEE-EeccCCcccCCceeeeChh
Confidence 0000000 0000 00011111112233333444444455666788999998765421 122345556677888766
Q ss_pred -----CCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCC------CEEEEEEeC
Q 000961 259 -----KQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD------RFWILASHP 300 (1208)
Q Consensus 259 -----~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~------~i~~la~sp 300 (1208)
.+.+|+-.-.||+|..||..+++.+..+....+ ..|.|++..
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 577888888899999999999988877775543 467777765
No 406
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.09 Score=60.34 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=101.1
Q ss_pred CCCEEE-EEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC-------EEEEEECCCeEEEEECCC-Ce-EEEEE
Q 000961 20 KRPWIL-ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-------LFVSGGDDYKIKVWNYKM-HR-CLFTL 89 (1208)
Q Consensus 20 dg~~La-sg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-------~Lasgs~Dg~I~vWd~~~-~~-~~~~l 89 (1208)
+.+.|+ .+.....++-.|++.|+.+..++-|.. |+-+.+.|+.+ --+.|-+|..|.-||.+- ++ .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 344445688889999999999988877 88888888754 123466788999999862 22 22222
Q ss_pred ccC----CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECC
Q 000961 90 LGH----LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 90 ~~h----~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
++| .....|.+-..+| +|++||.+|.||+||--..+....+.+...+|..+..+.+|++|+..+ +..+.+-++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 222 2244556555565 799999999999999644444455678889999999999999887665 6777777754
No 407
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.91 E-value=3.9 Score=45.80 Aligned_cols=267 Identities=11% Similarity=0.071 Sum_probs=125.3
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCC-CeEEEEe--cc---cccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRM-GTLIDRF--DE---HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~-g~~i~~l--~~---h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
...+..|.|..+..-.++| ..|.| +...+ |+.=... .. -.-...+|.|..+ ..+++| ..+. .+-..+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~-ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL-LLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTE-EEEESST
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCce-EEEecCC
Confidence 3578999999666656665 56654 33333 3221111 11 1223677888653 344444 4453 3333333
Q ss_pred CeEEEEEc---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 83 HRCLFTLL---GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 83 ~~~~~~l~---~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
|+.=..+. .-......+....++. ...++..|.|..=. +.|+. ......-.+.+..+.-+++|+++++++....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 33222221 1223334444444443 33344455543322 23322 2233445577888888999998888876666
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCc
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR-MNETK 237 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd-~~~~~ 237 (1208)
..-||-.... ...........|..+.|.|++.+.+++ ..|.|++=+ .....
T Consensus 168 ~~s~~~G~~~---------------------------w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 168 YSSWDPGQTT---------------------------WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp EEEE-TT-SS----------------------------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred EEEecCCCcc---------------------------ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 6677754311 011222346789999999998765644 888888877 33333
Q ss_pred eeEEEeec--CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee---cCCCCEEEEEEeCCCCEEEEEECCC
Q 000961 238 AWEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR---REHDRFWILASHPEMNLLAAGHDSG 312 (1208)
Q Consensus 238 ~~~~~~l~--~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~---~~~~~i~~la~sp~~~~la~g~~~g 312 (1208)
.|...... .....+..++|.+++...++|+. |.+.+ ....|+.-+..+ .-...++.+.|.++.+-++.|.++-
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 33221122 23345789999999887776654 44433 445555444433 2234578888887777888887543
Q ss_pred e
Q 000961 313 M 313 (1208)
Q Consensus 313 i 313 (1208)
+
T Consensus 298 l 298 (302)
T PF14870_consen 298 L 298 (302)
T ss_dssp E
T ss_pred E
Confidence 3
No 408
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.87 E-value=4.7 Score=46.33 Aligned_cols=258 Identities=14% Similarity=0.093 Sum_probs=122.9
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeE---EEEe----cccccCEEEEEEEcC----CCEEEEEECC-------
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL---IDRF----DEHDGPVRGVHFHKS----QPLFVSGGDD------- 72 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~---i~~l----~~h~~~V~~l~fsp~----~~~Lasgs~D------- 72 (1208)
..++|+|.|||..+++ ...|.|.+++ .++.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4689999999987665 5699999999 55554 2222 234567899999994 3333333321
Q ss_pred -CeEEEEECCCC-------eEEE-EEcc---CCCCEEEEEEcCCCCEEEEEECCCc-------------EEEEECCCCe-
Q 000961 73 -YKIKVWNYKMH-------RCLF-TLLG---HLDYIRTVQFHHEYPWIVSASDDQT-------------IRIWNWQSRT- 126 (1208)
Q Consensus 73 -g~I~vWd~~~~-------~~~~-~l~~---h~~~I~~v~fs~d~~~l~s~s~Dg~-------------I~iwd~~s~~- 126 (1208)
..|.-|.+..+ +.+. .+.. ....-..|.|.||+.+.++.++.+. |.-.+.. ++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 24555555433 1121 2222 2345677999999976666554332 2222222 11
Q ss_pred ------------EEEEE-ecCCCCEEEEEEeeCCCEEEEEE--CCCeEEEEECCCCccccccCCC--cceeecccccccc
Q 000961 127 ------------CISVL-TGHNHYVMCASFHPKEDLVVSAS--LDQTVRVWDIGALRKKTVSPAD--DILRLSQMNTDLF 189 (1208)
Q Consensus 127 ------------~i~~l-~~h~~~V~~l~~~p~~~~l~s~s--~Dg~V~vwdl~~~~~~~~~~~~--~~~~~~~~~~~~~ 189 (1208)
....+ .++. ....++|+|....|.++. .++.=.|--+..+..--..... ....-........
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 00011 1222 245789999833344433 2222222222221110000000 0000000000000
Q ss_pred ccccceEEEEEeccCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCc-eeEEEee-cCcCCCeEEEEEccCC
Q 000961 190 GGVDAVVKYVLEGHDRGVNWAAFHP-------TLPLIVSGADDRQVKLWRMNETK-AWEVDTL-RGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 190 ~~~~~~~~~~~~~h~~~V~~l~~sp-------~g~~L~sgs~dg~I~iwd~~~~~-~~~~~~l-~~h~~~V~~l~~sp~g 260 (1208)
..........+. +...+..+.|.. .|.+++..-..+.|....+.... ......+ ......+..+++.|||
T Consensus 239 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 000111222333 345666777764 34466666666778887776443 2223332 3445589999999999
Q ss_pred CEEEEEeCCCcEE
Q 000961 261 DIIVSNSEDKSIR 273 (1208)
Q Consensus 261 ~~l~sgs~dg~I~ 273 (1208)
.+.++.+.+|.|.
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9999888888764
No 409
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.64 E-value=9.5 Score=48.23 Aligned_cols=190 Identities=13% Similarity=0.095 Sum_probs=93.0
Q ss_pred eEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCE-E-EEEEec---------CCCEEEEEEccCCCCC-CCcc
Q 000961 339 FLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENA-V-LICSDV---------DGGSYELYVIPKDSIG-RGDS 406 (1208)
Q Consensus 339 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~-l-lv~~~~---------~~g~v~l~~l~~~~~~-~~~~ 406 (1208)
.|++.|..+++.+..+.+..... ...+....|+..+.. + +++... .+|.+..|++-..... +..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~---a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell- 929 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEA---AFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL- 929 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcc---hhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee-
Confidence 58899999888877777665432 225667777755443 3 332221 1244566665433221 011
Q ss_pred cccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCc-eeeeecC---CcceEEEEEeCCccEEEEeC--CeE--EEEE
Q 000961 407 VQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE-VVKKSIL---PIAADAIFYAGTGNLLCRAE--DRV--VIFD 478 (1208)
Q Consensus 407 ~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~-~~~~l~~---~~~v~~i~~s~dg~~Las~d--g~v--~lwd 478 (1208)
....-.+.+ .+..|-..++.++- ...+++|++..+ .+++... +..|+++.+.. ..++.+| ..| ..|+
T Consensus 930 h~T~~~~~v--~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~--~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 930 HKTEIPGPV--GAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG--ARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred eccCCCccc--eEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEeecc--eEEEEeeccceEEEEEEe
Confidence 011112222 34455444444444 588999999843 3332221 33566666554 4565554 333 3455
Q ss_pred cCCCeEEEEEeC---CCeeEEEECCCCCEEEEEeCCe-EEEEecCccceeeeecceeeeeeEEe
Q 000961 479 LQQRLVLGDLQT---PFVKYVVWSNDMESVALLSKHA-IIIASKKLVHQCTLHETIRVKSGAWD 538 (1208)
Q Consensus 479 l~~~~~l~~~~~---~~v~~v~ws~dg~~la~~s~~~-i~i~~~~~~~~~~~~e~~~iks~~wd 538 (1208)
-+.++.+.-... ..|+.+.+ -|...+|.+++-+ +++...--+....+.|....-+..|+
T Consensus 1005 ~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~k~~~~ 1067 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPPDVSEEASEDPTELKIAWE 1067 (1205)
T ss_pred cCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCCcchhhhccCCccccceec
Confidence 544444433322 12333333 3444566666655 56655443333333332223345664
No 410
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.51 E-value=0.87 Score=56.17 Aligned_cols=230 Identities=12% Similarity=0.078 Sum_probs=120.3
Q ss_pred CCCCEEEEEecC------CeEEEEECCCCeEEEEec-ccccCEEEEEEEcCCCEEEEEECC------CeEEEEECCCCeE
Q 000961 19 SKRPWILASLHS------GVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQPLFVSGGDD------YKIKVWNYKMHRC 85 (1208)
Q Consensus 19 pdg~~Lasg~~d------g~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~~~~Lasgs~D------g~I~vWd~~~~~~ 85 (1208)
..+..+++||.+ ..+..+|..+++-..... .+...-.+++.. ++.+.++||.| .++..||..+.+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 345677777766 368888988774433222 122223344443 45788889888 3577788776654
Q ss_pred EE--EEccCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeEEEEEecCCCCEEEE-EEeeCCCEEEEEECCC
Q 000961 86 LF--TLLGHLDYIRTVQFHHEYPWIVSASDDQ-----TIRIWNWQSRTCISVLTGHNHYVMCA-SFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 86 ~~--~l~~h~~~I~~v~fs~d~~~l~s~s~Dg-----~I~iwd~~s~~~i~~l~~h~~~V~~l-~~~p~~~~l~s~s~Dg 157 (1208)
.. .+.......... .-+|...++|+.|| ++-.||..+.+--..-. ......+. .-.-+|...++|+.++
T Consensus 362 ~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCC
Confidence 33 121111111111 22567788888886 47778876554221111 11111111 1222567777777554
Q ss_pred ------eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCc----
Q 000961 158 ------TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ---- 227 (1208)
Q Consensus 158 ------~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~---- 227 (1208)
++..||..+..-....+. ........ ++. -++.+.++|+.|+.
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M-------------------------~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~ 491 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPM-------------------------NTRRSGFG-VAV-LNGKIYVVGGFDGTSALS 491 (571)
T ss_pred CccccceEEEEcCCCCceeecCCc-------------------------ccccccce-EEE-ECCEEEEECCccCCCccc
Confidence 467777766554332221 00011111 222 24567778877763
Q ss_pred -EEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCe
Q 000961 228 -VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS-----IRVWDVTKRT 281 (1208)
Q Consensus 228 -I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~-----I~vwd~~~~~ 281 (1208)
|..||..+.+...+..+......+..+.+ ++...++|+.||. |..||..+.+
T Consensus 492 ~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 492 SVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred eEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 77788888775333323333333333333 4677788887763 5566655443
No 411
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.40 E-value=0.23 Score=63.72 Aligned_cols=130 Identities=8% Similarity=0.036 Sum_probs=101.7
Q ss_pred HHHHhcCCHHHHHHHHHHhC--ChhHHHHHHHHHHHcCChhHHHHHHHhhcC---------cchhHHHHHhcCCHHHHHH
Q 000961 641 NLALESGNIQIAVASAKEID--EKDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~~--~~~~w~~La~~al~~g~~~~Ae~~y~~~~d---------~~~l~~l~~~~g~~~kl~k 709 (1208)
+++.++|+++.|.+...++. +...|..|.....+.|+++.|.+.|.++.. |..+...|...|+.++.++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 56778999999999998765 457899999999999999999999988743 2344556677899998888
Q ss_pred HHHHHHHcCCc------hhhHHHHHhcCCHHHHHHHHHHcCCCh-----HHHHHHHhcCChHHHHHHHHHcC
Q 000961 710 MLKIAEVKNDV------MGQFHNALYLGDVKERVKILESAGHLP-----LAYITASVHGLQDVAERLAAELG 770 (1208)
Q Consensus 710 ~~~~~~~~~~~------~~~~~~al~lgd~~~A~~i~~~~g~~~-----~A~~~a~~~g~~~~a~~l~~~~~ 770 (1208)
+.+.....|-. +.....+...|++++|.++|.+....+ --+..+..+|+.++|.++.+++.
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87766666622 334455677899999999999876544 33455678999999999999863
No 412
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.21 Score=57.41 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=96.8
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-------EEEEEECCCcEEEEECCC-Ce-EEEEEecCC
Q 000961 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-------WIVSASDDQTIRIWNWQS-RT-CISVLTGHN 135 (1208)
Q Consensus 65 ~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~-------~l~s~s~Dg~I~iwd~~s-~~-~i~~l~~h~ 135 (1208)
+|.++.....++--|++.|+.+.++.-|.+ |.-+.+.|+.+ .-+.|-+|..|.-||.+- +. .+....+|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344566667788889999999999987777 77788888754 224566688899999872 22 233333332
Q ss_pred ----CCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE
Q 000961 136 ----HYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1208)
Q Consensus 136 ----~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (1208)
....|.+-..+ .+|++||.+|.||+||--..+.+. .+.+-..+|..+.
T Consensus 427 y~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKT---------------------------AlPgLG~~I~hVd 478 (644)
T KOG2395|consen 427 YSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKT---------------------------ALPGLGDAIKHVD 478 (644)
T ss_pred cccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhh---------------------------cccccCCceeeEE
Confidence 23455555544 489999999999999974433332 4556778899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEC
Q 000961 212 FHPTLPLIVSGADDRQVKLWRM 233 (1208)
Q Consensus 212 ~sp~g~~L~sgs~dg~I~iwd~ 233 (1208)
.+.+|++|+..+. ..+.+.+.
T Consensus 479 vtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 479 VTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred eeccCcEEEEecc-cEEEEEEE
Confidence 9999998887664 44555543
No 413
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.33 E-value=0.23 Score=65.30 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=97.7
Q ss_pred hHHHHHHHhCCChhhhhccccCc-------ch-----hhHHHHhcCCHHHHHHHHHHh------CChhHHHHHHHHHHHc
Q 000961 614 QAMIAYLQQKGFPEVALHFVKDE-------RT-----RFNLALESGNIQIAVASAKEI------DEKDHWYRLGVEALRQ 675 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~~~-------~~-----~f~lal~~g~~~~A~~~a~~~------~~~~~w~~La~~al~~ 675 (1208)
..++..+-+.|..+.|++++.+- .. -...+.+.|+++.|++..+.+ .+...|..|-..+.+.
T Consensus 476 nsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 34556666777777777655422 11 124455678888877776554 3456777888888888
Q ss_pred CChhHHHHHHHhhcC-----------cchhHHHHHhcCCHHHHHHHHHHHHHcCC------chhhHHHHHhcCCHHHHHH
Q 000961 676 GNAGIVEYAYQRTKN-----------FERLSFLYLITGNMDKLSKMLKIAEVKND------VMGQFHNALYLGDVKERVK 738 (1208)
Q Consensus 676 g~~~~Ae~~y~~~~d-----------~~~l~~l~~~~g~~~kl~k~~~~~~~~~~------~~~~~~~al~lgd~~~A~~ 738 (1208)
|+++.|.+.|.++.. |..+...|+..|+.++..++-+.....+- +......+...|++++|.+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 888888888777642 23455567777888777777666655552 1233334556678888887
Q ss_pred HHHHcCCC---------hHHHHHHHhcCChHHHHHHHHHc
Q 000961 739 ILESAGHL---------PLAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 739 i~~~~g~~---------~~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
+|.+.... ..-+..+...|..++|.++.+.+
T Consensus 636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77665432 12234455677777777777764
No 414
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.20 E-value=3.3 Score=44.93 Aligned_cols=196 Identities=8% Similarity=-0.007 Sum_probs=107.1
Q ss_pred CEEEEEEeCCCCEEEEEecCC--eEEEEECCCCeEEEEecccc-cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE
Q 000961 11 RVKGLSFHSKRPWILASLHSG--VIQLWDYRMGTLIDRFDEHD-GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg--~I~iWd~~~g~~i~~l~~h~-~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
-..++.|..+|.++-+.+.-| .|+.+|+.+|+......-.. --=-+++.. ++++....-.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 355788877787777777655 79999999998776543111 111223333 23344444577899999999999988
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--C---CCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH--N---HYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h--~---~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
++.- .+.=..++ .|+..|+.+.....|+++|..+-+....+... . ..+.-+.|. +|...+-.=....|...
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 8863 33445555 56667777777889999999887766665422 1 234556665 44433333344455555
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs 223 (1208)
|..+++............ ...... .......-.+.+|++|..+.|.+.+
T Consensus 201 dp~tG~V~~~iDls~L~~------~~~~~~------~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRP------EVGRDK------SRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHH------HHTSTT------ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhh------cccccc------cccccCCeeEeEeEeCCCCEEEEEe
Confidence 655544332111000000 000000 0001135578999999877666655
No 415
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.22 Score=61.37 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=73.1
Q ss_pred hHHHHHHHhCCChhhhhccccCcchhhHH---H----H-hcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHH
Q 000961 614 QAMIAYLQQKGFPEVALHFVKDERTRFNL---A----L-ESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAY 685 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~~~~~~f~l---a----l-~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y 685 (1208)
..|+......+.+|+|..+++ +|++ | + ..+++|+|.++|...+.|.+|.+||.+-|.+|.+..|...|
T Consensus 1052 ~~ia~iai~~~LyEEAF~ifk----kf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFK----KFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHHH----HhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHH
Confidence 334444444555555555432 2322 2 2 26999999999999999999999999999999999999999
Q ss_pred HhhcC---cchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 686 QRTKN---FERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 686 ~~~~d---~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
.+.-| |..+..+...+|+++.|.+-..++..
T Consensus 1128 ikadDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1128 IKADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred HhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99865 55666777788999888765554433
No 416
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.13 E-value=0.23 Score=65.38 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=102.1
Q ss_pred hHHHHHHHhCCChhhhhccccCc---------ch-----hhHHHHhcCCHHHHHHHHHHhC------ChhHHHHHHHHHH
Q 000961 614 QAMIAYLQQKGFPEVALHFVKDE---------RT-----RFNLALESGNIQIAVASAKEID------EKDHWYRLGVEAL 673 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~~~---------~~-----~f~lal~~g~~~~A~~~a~~~~------~~~~w~~La~~al 673 (1208)
..++..+.+.|..+.|+++..+. .. ....+.++|++++|.++.+.+. ++..|..|...+.
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 34555566677777777654322 11 1245666788888888776543 3467888888888
Q ss_pred HcCChhHHHHHHHhhcC---------cchhHHHHHhcCCHHHHHHHHHHHHHcCCc------hhhHHHHHhcCCHHHHHH
Q 000961 674 RQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLSKMLKIAEVKNDV------MGQFHNALYLGDVKERVK 738 (1208)
Q Consensus 674 ~~g~~~~Ae~~y~~~~d---------~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~------~~~~~~al~lgd~~~A~~ 738 (1208)
+.|+++.|.+.|.++.. |..+...|...|+.++..++.+.....|-. ......+...|++++|.+
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888888877653 234555667788888877776666555532 233344566788888888
Q ss_pred HHHHcCC----C-----hHHHHHHHhcCChHHHHHHHHHcC
Q 000961 739 ILESAGH----L-----PLAYITASVHGLQDVAERLAAELG 770 (1208)
Q Consensus 739 i~~~~g~----~-----~~A~~~a~~~g~~~~a~~l~~~~~ 770 (1208)
+|.+... + .--+......|..++|.++.+.+.
T Consensus 706 lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8876521 1 223345567888888888888753
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.98 E-value=7 Score=42.92 Aligned_cols=153 Identities=11% Similarity=-0.076 Sum_probs=90.6
Q ss_pred CEEEEEEEcCCCEEEEEE---CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE-CCCCeEE
Q 000961 53 PVRGVHFHKSQPLFVSGG---DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN-WQSRTCI 128 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs---~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd-~~s~~~i 128 (1208)
.+.+.++++++..++... ....+.++... ....... ....+..-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877665 33456666543 2222221 223778889999977666656666667764 2333222
Q ss_pred --EEEec-CCCCEEEEEEeeCCCEEEEEE---CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 129 --SVLTG-HNHYVMCASFHPKEDLVVSAS---LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 129 --~~l~~-h~~~V~~l~~~p~~~~l~s~s---~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
..-.. -...|..+.++|||..++... .++.|.+--+........ . . -.........
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~------~-------~-----l~~~~~~~~~ 163 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP------R-------R-----LTGPRRVAPP 163 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc------c-------e-----eccceEeccc
Confidence 11111 112899999999998887766 356777765432111100 0 0 0001112223
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCC
Q 000961 203 HDRGVNWAAFHPTLPLIVSGADDR 226 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~dg 226 (1208)
....+..+.|.+++.+++.+...+
T Consensus 164 ~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 164 LLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ccCcceeeeecCCCEEEEEeCCCC
Confidence 356789999999998777766544
No 418
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.97 E-value=8.3 Score=43.61 Aligned_cols=239 Identities=9% Similarity=0.090 Sum_probs=119.0
Q ss_pred CCCEEEEEecCCeEEEEECCC--CeEEEEecccccCEEEEEEEcCCCEEEEEEC-CCeEEEEECCCCeE-----------
Q 000961 20 KRPWILASLHSGVIQLWDYRM--GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-DYKIKVWNYKMHRC----------- 85 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~--g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-Dg~I~vWd~~~~~~----------- 85 (1208)
++++|+.|+.+| |.+-+... ++..+.+ +..+|+++...+..+.|++-++ ...++++++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 346999999999 55555554 3344443 5678999999998887776554 44599999842111
Q ss_pred ----EEEEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCC--e--EEEEE---e-cCCCCEEEEEEeeC--CCEE
Q 000961 86 ----LFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSR--T--CISVL---T-GHNHYVMCASFHPK--EDLV 150 (1208)
Q Consensus 86 ----~~~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~--~--~i~~l---~-~h~~~V~~l~~~p~--~~~l 150 (1208)
....-+|............. ..++++....+|.++.+... + ....+ . .-..++..+..+++ ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 11122344444433333221 23455556677888766432 1 11110 0 01123333333333 4567
Q ss_pred EEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccC-CCeEEEEEcCCCCEEEEEeCCCcEE
Q 000961 151 VSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVK 229 (1208)
Q Consensus 151 ~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~L~sgs~dg~I~ 229 (1208)
..|+..+...++++... ...+. +........... .++..... +++.++++ .++ ...
T Consensus 169 cvG~~~~~~~~~~~~~~---~~~~~-----------------d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~~~-~~v 225 (302)
T smart00036 169 CIGSDKGGGDVVQFHES---LVSKE-----------------DLSLPFLSEETSLKPISVVQV-PRDEFLLC-YDE-FGV 225 (302)
T ss_pred EEEEcCCCCeEEEEeec---ccccc-----------------cccccccccccccCceEEEEE-CCCeEEEE-ECc-EEE
Confidence 77776533444554320 00000 000000011111 23333333 34444443 333 344
Q ss_pred EEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec
Q 000961 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 288 (1208)
+-|..+........+. -...+.++++. ..+++.-+.+ .|.++++.+++.++++..
T Consensus 226 ~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 226 FVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred EEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 4455441111111222 23455677776 3566666554 599999999998888864
No 419
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.89 E-value=0.42 Score=60.31 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=24.1
Q ss_pred hcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHh
Q 000961 645 ESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQR 687 (1208)
Q Consensus 645 ~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~ 687 (1208)
..|+++.|+...+.. +++..|..+|.....+|+++.|+.+|.+
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 345566655554432 2355566666666666666666666655
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.84 E-value=0.0076 Score=68.14 Aligned_cols=297 Identities=12% Similarity=0.133 Sum_probs=166.6
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEE-EECCCeEEEEECCCCeEEEEEc
Q 000961 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDYKIKVWNYKMHRCLFTLL 90 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg~I~vWd~~~~~~~~~l~ 90 (1208)
.-...|-|.+.-++.++.+..+..|| +.|+...... ..+....++|..+++.++. +-..+.+.+||+.+.....--.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 34567888777799998999999999 5566555443 4555677889888885554 4567899999987543211111
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeE----------E
Q 000961 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTV----------R 160 (1208)
Q Consensus 91 ~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V----------~ 160 (1208)
+....-.-+.|++.++.++.+...|.++|++..+.+.+.....|...+++++|.+.+ +.+.++.|..+ +
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qegeta~ 193 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEGETAS 193 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhccceee
Confidence 222222337899999999999999999999998877777766699999999999876 45555555443 3
Q ss_pred EEECCCCccccc---------cCCCccee-ecccccc-c---cccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 000961 161 VWDIGALRKKTV---------SPADDILR-LSQMNTD-L---FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (1208)
Q Consensus 161 vwdl~~~~~~~~---------~~~~~~~~-~~~~~~~-~---~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg 226 (1208)
.+...+.-.... ......+. ....... . ....+..+...+....+.+.|..|--||. |..+.+-|
T Consensus 194 ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~-i~igf~ag 272 (615)
T KOG2247|consen 194 LTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY-ILIGFDAG 272 (615)
T ss_pred eeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc-ccccccce
Confidence 333322100000 00000000 0000000 0 01122233335555667788888888874 56666667
Q ss_pred cEEEEECCCCcee-EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE--EeecCCCCEEEEEEeCCCC
Q 000961 227 QVKLWRMNETKAW-EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ--TFRREHDRFWILASHPEMN 303 (1208)
Q Consensus 227 ~I~iwd~~~~~~~-~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~--~~~~~~~~i~~la~sp~~~ 303 (1208)
.|..-++.+.+.. +......|.+.+.+++.|..-+-.++.+ |+.+++-|...-.... .+.........+.+.-+|+
T Consensus 273 ~iV~iS~h~aeLgaeffqkldy~~aLqsiavsqcvnkaftlg-dn~nkvRdl~el~e~y~n~L~eaek~lge~~~t~dgq 351 (615)
T KOG2247|consen 273 YIVSISAHNAELGAEFFQKLDYRGALQSIAVSQCVNKAFTLG-DNMNKVRDLDELTEVYMNTLIEAEKNLGEIEVTEDGQ 351 (615)
T ss_pred eEEEEeccchHHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhccCceeeeeccc
Confidence 7766666665431 0111225666666666554222222222 3334443332111000 0111111223455666788
Q ss_pred EEEEEECCCe
Q 000961 304 LLAAGHDSGM 313 (1208)
Q Consensus 304 ~la~g~~~gi 313 (1208)
+++.++..+.
T Consensus 352 lyals~Q~g~ 361 (615)
T KOG2247|consen 352 LYALSSQSGV 361 (615)
T ss_pred eeeehhccch
Confidence 7777665553
No 421
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=94.84 E-value=0.68 Score=49.41 Aligned_cols=129 Identities=20% Similarity=0.142 Sum_probs=88.0
Q ss_pred HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc----------chhHHHHHhcCCHH
Q 000961 641 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF----------ERLSFLYLITGNMD 705 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~----------~~l~~l~~~~g~~~ 705 (1208)
.++...|+++.|.+..++. +++..|..+|.....+|+++.|+..|.+.-+. ..+..+|...|+.+
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 4556678999888876532 34678889999999999999999999886321 23456778889988
Q ss_pred HHHHHHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHcCCC--------hHHHHHHHhcCChHHHHHHHHHc
Q 000961 706 KLSKMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGHL--------PLAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 706 kl~k~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~g~~--------~~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
+..+..+.+...... .....++...|++++|++.|.+.-.. .....++...|..+.|..+.+.+
T Consensus 153 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 887666655433221 22334556679999999888875221 12445666777888887776653
No 422
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.73 E-value=0.54 Score=55.49 Aligned_cols=156 Identities=14% Similarity=0.041 Sum_probs=88.9
Q ss_pred hHHHHHHHhCCChhhhhcccc----Ccch--------hh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHH
Q 000961 614 QAMIAYLQQKGFPEVALHFVK----DERT--------RF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEAL 673 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~----~~~~--------~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al 673 (1208)
..+..++...|..+.|..... .+.. .+ ......|+++.|....++. .+...+..|+....
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 345555666777766665432 1110 11 2345567888887776554 23556777788888
Q ss_pred HcCChhHHHHHHHhhcCcc-------------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hhhHHHHHhcCCHHH
Q 000961 674 RQGNAGIVEYAYQRTKNFE-------------RLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHNALYLGDVKE 735 (1208)
Q Consensus 674 ~~g~~~~Ae~~y~~~~d~~-------------~l~~l~~~~g~~~kl~k~~~~~~~~~~~-----~~~~~~al~lgd~~~ 735 (1208)
.+|+++.|...|.++-... .+..+|...|+.++..+..+.+...... ......+...|++++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888777653221 2333455677777766555544332211 122344566788888
Q ss_pred HHHHHHHcCCC--h---HH----HHHHHhcCChHHHHHHHHHc
Q 000961 736 RVKILESAGHL--P---LA----YITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 736 A~~i~~~~g~~--~---~A----~~~a~~~g~~~~a~~l~~~~ 769 (1208)
|+++|.+.-.. . .+ .......|..++|.+..+.+
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887775532 1 11 12334567777777776653
No 423
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.62 E-value=0.094 Score=54.29 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=70.6
Q ss_pred CCEEEEEecCCeEEEEECCC-CeEEEEecccccCEEE-EEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCC-CCEE
Q 000961 21 RPWILASLHSGVIQLWDYRM-GTLIDRFDEHDGPVRG-VHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL-DYIR 97 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~-g~~i~~l~~h~~~V~~-l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~-~~I~ 97 (1208)
+..+++|+.+|.|.+|+... |.....+..-..+|.+ +.--.++.+..+++.||.|+.|++.-.+.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45688999999999999752 2222222222233333 2223355688899999999999999888888887787 5666
Q ss_pred EEEEcCCCCEEEEE--ECCCcEEEEECCC
Q 000961 98 TVQFHHEYPWIVSA--SDDQTIRIWNWQS 124 (1208)
Q Consensus 98 ~v~fs~d~~~l~s~--s~Dg~I~iwd~~s 124 (1208)
....+..+..++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666666667776 7777777777653
No 424
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.56 E-value=2.2 Score=52.63 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=100.8
Q ss_pred cCCCEEEEEECC------CeEEEEECCCCeEEEEEcc-CCCCEEEEEEcCCCCEEEEEECC------CcEEEEECCCCeE
Q 000961 61 KSQPLFVSGGDD------YKIKVWNYKMHRCLFTLLG-HLDYIRTVQFHHEYPWIVSASDD------QTIRIWNWQSRTC 127 (1208)
Q Consensus 61 p~~~~Lasgs~D------g~I~vWd~~~~~~~~~l~~-h~~~I~~v~fs~d~~~l~s~s~D------g~I~iwd~~s~~~ 127 (1208)
..+.+++.||.+ ..+..+|..++.....-.- +...-.++++. ++...++|+.| .++..||..+++-
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 345577777766 3678888887644332211 22223344444 34677788877 3567788776653
Q ss_pred EE--EEecCCCCEEEEEEeeCCCEEEEEECCCe-----EEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 128 IS--VLTGHNHYVMCASFHPKEDLVVSASLDQT-----VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 128 i~--~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~-----V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
.. .+.......-... -+|...++|+.||. |-.||..+.+-....+.
T Consensus 362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m------------------------- 414 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM------------------------- 414 (571)
T ss_pred eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCC-------------------------
Confidence 22 1221111111111 25777888888864 66677766443322111
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCc---
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDR------QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS--- 271 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg------~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~--- 271 (1208)
.........+ .-+|.+.++|+.++ ++..||..+++...+..+...........+ ++.+.+.||.|+.
T Consensus 415 ~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~ 490 (571)
T KOG4441|consen 415 LTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSAL 490 (571)
T ss_pred CcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCcc
Confidence 0001111112 22567777777544 577888888775333333322222222222 5777888887763
Q ss_pred --EEEEeCCCCeeE
Q 000961 272 --IRVWDVTKRTGV 283 (1208)
Q Consensus 272 --I~vwd~~~~~~~ 283 (1208)
|..||..+.+..
T Consensus 491 ~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 491 SSVERYDPETNQWT 504 (571)
T ss_pred ceEEEEcCCCCcee
Confidence 666776655443
No 425
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.53 E-value=0.49 Score=60.72 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=94.4
Q ss_pred HHHHhcCCHHHHHHHHHHhC--ChhHHHHHHHHHHHcCChhHHHHHHHhhcC---------cchhHHHHHhcCCHHHHHH
Q 000961 641 NLALESGNIQIAVASAKEID--EKDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~~--~~~~w~~La~~al~~g~~~~Ae~~y~~~~d---------~~~l~~l~~~~g~~~kl~k 709 (1208)
+++.++|+++.|.+..+++. +...|..|.....++|+.+.|.+.|.++.. |..+...+...|+.++..+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 67778999999999988764 456899999999999999999999998764 3444445677899988777
Q ss_pred HHHHHHHc-CC------chhhHHHHHhcCCHHHHHHHHHHcCCChHH------HHHHHhcCChHHHHHHHHHc
Q 000961 710 MLKIAEVK-ND------VMGQFHNALYLGDVKERVKILESAGHLPLA------YITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 710 ~~~~~~~~-~~------~~~~~~~al~lgd~~~A~~i~~~~g~~~~A------~~~a~~~g~~~~a~~l~~~~ 769 (1208)
+-+..... |- +......+...|++++|.+++.+.+..+.+ +..++.+|..+.|.++++.+
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 66654332 22 122334456679999999999888754333 34556788888888888764
No 426
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.53 E-value=6.4 Score=52.32 Aligned_cols=414 Identities=10% Similarity=0.061 Sum_probs=194.0
Q ss_pred cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 000961 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS 129 (1208)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~ 129 (1208)
|..-++.|.-+++|..+=. .|+.++.||....+....-......+..+.-..||+..+ =+ |.+ +-|+.++..-.
T Consensus 361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~-~~~--l~nLSs~~~~~ 434 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KD-DDT--LVNLSSGQMSE 434 (1774)
T ss_pred HHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cC-CCc--eeecCCCCcch
Confidence 5555677777777665544 356777777665432210011122344444444444332 11 111 22333332111
Q ss_pred EEecCCCCEEEEEEeeCCCE-EEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 130 VLTGHNHYVMCASFHPKEDL-VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 130 ~l~~h~~~V~~l~~~p~~~~-l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
. .-..+.+...++++.. ++++.....+.+|++....-.... .......+.+......
T Consensus 435 ~---~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p-------------------~~~~~L~L~dG~a~A~ 492 (1774)
T PF11725_consen 435 A---EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTP-------------------RKTKTLQLADGKAQAQ 492 (1774)
T ss_pred h---hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCc-------------------cceeeeeccCCchhhh
Confidence 1 1234667777888876 556666667799998763221100 0111223333334667
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 000961 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 209 ~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~ 286 (1208)
++.++++ .|+++..+|.++.=++...+.- .+.....+......-.| .+...++|-. .-..|..-..+
T Consensus 493 ~VgLs~d--rLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~--G~~~~VtGF~-------~gd~G~lhAli 561 (1774)
T PF11725_consen 493 SVGLSND--RLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSAL--GGDHKVTGFI-------SGDDGQLHALI 561 (1774)
T ss_pred heeecCC--eEEEEeCCCCEEecccccccCCCcceEeccccccccccccc--cccceeeccc-------cCCCCeeeEEE
Confidence 7888776 5888899998887776543311 11111111100011111 1222232211 11223333344
Q ss_pred ecCCCCEEEEEEeCCCCEEEEE----------ECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCccee----
Q 000961 287 RREHDRFWILASHPEMNLLAAG----------HDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ---- 352 (1208)
Q Consensus 287 ~~~~~~i~~la~sp~~~~la~g----------~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~---- 352 (1208)
+...+.+.+.++..++..+-.| ...|+..-........+.++..-.+...+|.|+.||-.+.....
T Consensus 562 kd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq~W~~~~~k 641 (1774)
T PF11725_consen 562 KDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQCWKDAGVK 641 (1774)
T ss_pred eccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhccccccceeeccceEeeecCcchhhhhccCc
Confidence 4444455555555444433332 22222211111111123333333333378999999976522110
Q ss_pred -eEeecCCCCCCC----CcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC-CCCccccccc-CCceEEEEEEeCCc
Q 000961 353 -VIPIRRPGSTSL----NQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI-GRGDSVQDAK-KGLGGSAIFIARNR 425 (1208)
Q Consensus 353 -~~~~~~~~~~~~----~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~-~~~~~~~~~~-~~~i~~~~fs~d~~ 425 (1208)
+-.+++.-...- .+.+..+..++....+.. + ++..+. ++.... .+.-..+.+- ...|+.++...+++
T Consensus 642 d~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~--g-~~~~~a---~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~~~~ 715 (1774)
T PF11725_consen 642 DIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAH--G-DNNVFA---LPQRRNKVELGDALEGLEDRVITAFAVVNDNK 715 (1774)
T ss_pred CHHHHhccccCCceEecCCceeeeecccCCCcccc--C-CCcccc---cccccCCCCCCccccCCCcCcceeEEEEcCCc
Confidence 011111000000 125555666665544322 1 111221 211111 1111122232 34688899998888
Q ss_pred EEEEEcCCCEEEEEecCCceeeeecCC---cceEEEEEeCCccEEEE-eCCeEEEEEcCC---CeEE----------EEE
Q 000961 426 FAVLDKSSNQVLVKNLKNEVVKKSILP---IAADAIFYAGTGNLLCR-AEDRVVIFDLQQ---RLVL----------GDL 488 (1208)
Q Consensus 426 ~l~~~~~dg~I~Iwdl~~~~~~~l~~~---~~v~~i~~s~dg~~Las-~dg~v~lwdl~~---~~~l----------~~~ 488 (1208)
|++... .|.+..+.-.+. ...+..+ ..|.+|++.....+.+. .+|.++--+-+. .+.- ..-
T Consensus 716 fvald~-qg~lt~h~k~g~-p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP 793 (1774)
T PF11725_consen 716 FVALDD-QGDLTAHQKPGR-PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP 793 (1774)
T ss_pred eEEecc-CCccccccCCCC-CccCCCCCCCcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC
Confidence 888877 788998883333 3344444 38999999998777765 578776543221 1111 111
Q ss_pred eCCCeeEEEECCCCCEEEEEeC
Q 000961 489 QTPFVKYVVWSNDMESVALLSK 510 (1208)
Q Consensus 489 ~~~~v~~v~ws~dg~~la~~s~ 510 (1208)
...+|.++.-+.|....+...+
T Consensus 794 ~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 794 DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCCchhhhhcCCCCceEEEecC
Confidence 1145666666666665555554
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.51 E-value=11 Score=43.12 Aligned_cols=249 Identities=18% Similarity=0.160 Sum_probs=117.4
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECCCCeE---EEEE----ccCCCCEEEEEEcCC---CCEEEEEECC---------
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC---LFTL----LGHLDYIRTVQFHHE---YPWIVSASDD--------- 114 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~---~~~l----~~h~~~I~~v~fs~d---~~~l~s~s~D--------- 114 (1208)
-+.|+|.|+|.+|++ ...|.|++++ ..+.. +..+ .........++++|+ ..+|......
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999987775 5589999999 44443 2233 123457899999995 3344443331
Q ss_pred CcEEEEECCCC-------eEE-EEEec---CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeecc
Q 000961 115 QTIRIWNWQSR-------TCI-SVLTG---HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQ 183 (1208)
Q Consensus 115 g~I~iwd~~s~-------~~i-~~l~~---h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~ 183 (1208)
..|.-|....+ +.+ ..+.. ..+.-..+.|.|+|.+.++.+..+. . ............++++..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~-----~-~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN-----D-DNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT-----G-GGGCSTTSSTTEEEEEET
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC-----c-ccccccccccceEEEecc
Confidence 23444444333 111 12222 3466778999999976666654433 0 000000011112222221
Q ss_pred cccc-----ccccccceEEEEEeccCCCeEEEEEcCC-CCEEEEE-eCCCcEEEEECCCCce------------------
Q 000961 184 MNTD-----LFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSG-ADDRQVKLWRMNETKA------------------ 238 (1208)
Q Consensus 184 ~~~~-----~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~L~sg-s~dg~I~iwd~~~~~~------------------ 238 (1208)
.... ..+.........-.++ +....++|+|. |.++++= +.++.=.|..+..+..
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred cCcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 1110 0000000111122233 33457899998 6544432 2222222222211110
Q ss_pred ---------eEEEeecCcCCCeEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCeeEEE---ee-cCCCCEEEEEE
Q 000961 239 ---------WEVDTLRGHMNNVSCVMFHA-------KQDIIVSNSEDKSIRVWDVTKRTGVQT---FR-REHDRFWILAS 298 (1208)
Q Consensus 239 ---------~~~~~l~~h~~~V~~l~~sp-------~g~~l~sgs~dg~I~vwd~~~~~~~~~---~~-~~~~~i~~la~ 298 (1208)
.++..+..| ..++.+.|.+ +|.++++.-..+.|....+..+..+.. +. ....++..+++
T Consensus 235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 012223333 4566666653 345666665566787777764433222 22 23347899999
Q ss_pred eCCCCEEEEEECCC
Q 000961 299 HPEMNLLAAGHDSG 312 (1208)
Q Consensus 299 sp~~~~la~g~~~g 312 (1208)
.|||.++++...+|
T Consensus 314 ~pDG~Lyv~~d~~G 327 (331)
T PF07995_consen 314 GPDGALYVSDDSDG 327 (331)
T ss_dssp ETTSEEEEEE-TTT
T ss_pred cCCCeEEEEECCCC
Confidence 99999887766443
No 428
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.51 E-value=0.1 Score=40.32 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL 43 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~ 43 (1208)
.++|++++|+|..++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 467999999999999999999999999998 5543
No 429
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.48 E-value=8 Score=44.75 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=80.0
Q ss_pred eCCCCEEEEEec------CCeEEEEECCCCeEEEEeccccc---CEEEEEEEcCCCEEEEEEC-----------------
Q 000961 18 HSKRPWILASLH------SGVIQLWDYRMGTLIDRFDEHDG---PVRGVHFHKSQPLFVSGGD----------------- 71 (1208)
Q Consensus 18 spdg~~Lasg~~------dg~I~iWd~~~g~~i~~l~~h~~---~V~~l~fsp~~~~Lasgs~----------------- 71 (1208)
-|+|+.++++.. -|-+.+.|-++.+.....+...+ --..+-|.|..+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 368888887743 25688999888888877764332 2456778999999988743
Q ss_pred ---CCeEEEEECCCCeEEEEEccCCC--CEEEEEEcCC--CCE-EEEEECCCcEEEE-ECCCCe----EEEEEec-----
Q 000961 72 ---DYKIKVWNYKMHRCLFTLLGHLD--YIRTVQFHHE--YPW-IVSASDDQTIRIW-NWQSRT----CISVLTG----- 133 (1208)
Q Consensus 72 ---Dg~I~vWd~~~~~~~~~l~~h~~--~I~~v~fs~d--~~~-l~s~s~Dg~I~iw-d~~s~~----~i~~l~~----- 133 (1208)
-.++.+||+.+++.++++.-... ....+.|.++ ..+ ++.+....+|..| .-..++ .+..+..
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 24899999999999999864433 3556777655 333 3333334444444 323332 1112211
Q ss_pred C------------CCCEEEEEEeeCCCEEEEEE-CCCeEEEEECCCCcc
Q 000961 134 H------------NHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRK 169 (1208)
Q Consensus 134 h------------~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl~~~~~ 169 (1208)
- ..-|+.+..|.|+++|...+ .+|.|+.||++....
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 0 24578999999999888776 589999999987554
No 430
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.33 E-value=21 Score=45.52 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=92.4
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEecccccCEE-------------EEEEEc--CCCEEEEEEC----------CCeE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVR-------------GVHFHK--SQPLFVSGGD----------DYKI 75 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~-------------~l~fsp--~~~~Lasgs~----------Dg~I 75 (1208)
+..++.++.|+.+.-.|.++|+.+..|. .++.|. .+.-.| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 4478888899999999999999998773 222221 011111 1335666642 6889
Q ss_pred EEEECCCCeEEEEEccC---------CC--------CE-EEEEEcCCCCEEEEEE------------------CCCcEEE
Q 000961 76 KVWNYKMHRCLFTLLGH---------LD--------YI-RTVQFHHEYPWIVSAS------------------DDQTIRI 119 (1208)
Q Consensus 76 ~vWd~~~~~~~~~l~~h---------~~--------~I-~~v~fs~d~~~l~s~s------------------~Dg~I~i 119 (1208)
+-+|.++|+.+..+..- .+ .+ ..+++.++...++... ..+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999999988776421 00 11 2234444433333321 1356777
Q ss_pred EECCCCeEEEEEecCCCCE---------EEEEEee-CC---CEEEEEECCCeEEEEECCCCcccc
Q 000961 120 WNWQSRTCISVLTGHNHYV---------MCASFHP-KE---DLVVSASLDQTVRVWDIGALRKKT 171 (1208)
Q Consensus 120 wd~~s~~~i~~l~~h~~~V---------~~l~~~p-~~---~~l~s~s~Dg~V~vwdl~~~~~~~ 171 (1208)
.|..+|+....++...+.+ .-+.+.. +| ..++.++.+|.+.+.|-++++...
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 7888999888776422211 1122222 44 378999999999999998877543
No 431
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.29 E-value=9.7 Score=41.38 Aligned_cols=124 Identities=9% Similarity=0.074 Sum_probs=77.3
Q ss_pred eEEEEeccccc--CEEEEEEEcCCCEEEEEECCC--eEEEEECCCCeEEEEEccCCC-CEEEEEEcCCCCEEEEEECCCc
Q 000961 42 TLIDRFDEHDG--PVRGVHFHKSQPLFVSGGDDY--KIKVWNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSASDDQT 116 (1208)
Q Consensus 42 ~~i~~l~~h~~--~V~~l~fsp~~~~Lasgs~Dg--~I~vWd~~~~~~~~~l~~h~~-~I~~v~fs~d~~~l~s~s~Dg~ 116 (1208)
+.+.++ .|+. -..++.|..++.++-+.|.-| .|+.+|+.+++......-... ---.++...| ....-.=.++.
T Consensus 34 ~vv~~y-pHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETY-PHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGT 111 (264)
T ss_dssp EEEEEE-E--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSE
T ss_pred EEEEEC-CCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCe
Confidence 345555 3443 356788888888888887655 799999999987765542222 2233444433 23333345789
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccc
Q 000961 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (1208)
Q Consensus 117 I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~ 170 (1208)
..+||..+-+.+.++.-. +.=..++ .+++.|+.......++++|..+.+..
T Consensus 112 ~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 999999999998888633 3445555 46777887777888999998775543
No 432
>PHA02713 hypothetical protein; Provisional
Probab=94.20 E-value=0.98 Score=55.85 Aligned_cols=188 Identities=6% Similarity=-0.011 Sum_probs=91.1
Q ss_pred CCCEEEEEecC------CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCC-----eEEEEECCCCeEEE-
Q 000961 20 KRPWILASLHS------GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY-----KIKVWNYKMHRCLF- 87 (1208)
Q Consensus 20 dg~~Lasg~~d------g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg-----~I~vWd~~~~~~~~- 87 (1208)
++...++||.+ ..+..||..+++-...-.-....-......-++.+.+.||.++ ++..||..+.+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45555666643 3466778766643221111111111122234677888888653 48889987664432
Q ss_pred -EEccCCCCEEEEEEcCCCCEEEEEECC-----------------------CcEEEEECCCCeEE--EEEecCCCCEEEE
Q 000961 88 -TLLGHLDYIRTVQFHHEYPWIVSASDD-----------------------QTIRIWNWQSRTCI--SVLTGHNHYVMCA 141 (1208)
Q Consensus 88 -~l~~h~~~I~~v~fs~d~~~l~s~s~D-----------------------g~I~iwd~~s~~~i--~~l~~h~~~V~~l 141 (1208)
.+.........+. -++...+.|+.+ .++..||..+.+-. ..+...... .++
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~ 459 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGV 459 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-CcE
Confidence 2211111111222 256666666654 24777887765432 222111111 112
Q ss_pred EEeeCCCEEEEEECCC------eEEEEECCC-CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC
Q 000961 142 SFHPKEDLVVSASLDQ------TVRVWDIGA-LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (1208)
Q Consensus 142 ~~~p~~~~l~s~s~Dg------~V~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (1208)
+ .-++...+.|+.++ .+..||..+ .+-.... .+.........+.+
T Consensus 460 ~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-------------------------~m~~~r~~~~~~~~-- 511 (557)
T PHA02713 460 V-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-------------------------TTESRLSALHTILH-- 511 (557)
T ss_pred E-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-------------------------ccCcccccceeEEE--
Confidence 2 22455666665432 356677665 3322111 11111112222222
Q ss_pred CCCEEEEEeCCC--cEEEEECCCCce
Q 000961 215 TLPLIVSGADDR--QVKLWRMNETKA 238 (1208)
Q Consensus 215 ~g~~L~sgs~dg--~I~iwd~~~~~~ 238 (1208)
++.+.++|+.+| .+..||..+.+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 567888998888 677788777764
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=94.15 E-value=14 Score=42.56 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=80.4
Q ss_pred CCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-Cce
Q 000961 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEV 445 (1208)
Q Consensus 367 ~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~ 445 (1208)
.+..+.+.|++..+++... |.+..-.-........ ........+.++.+.++++.++.+. .|.+++-+.+ +..
T Consensus 174 ~~~~i~~~~~g~~v~~g~~---G~i~~s~~~gg~tW~~--~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~s 247 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSR---GNFYSTWEPGQTAWTP--HQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLES 247 (334)
T ss_pred eEEEEEECCCCeEEEEeCC---ceEEEEcCCCCCeEEE--eeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCc
Confidence 6778889998876544322 4332210011111111 1112334678889999999887776 6776544344 322
Q ss_pred eeeecCC-----cceEEEEEeCCccEEEEeCCeEEEEEcCCCeEEEEEeC-----CCeeEEEECCCCCEEEEEeCCeEEE
Q 000961 446 VKKSILP-----IAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQT-----PFVKYVVWSNDMESVALLSKHAIII 515 (1208)
Q Consensus 446 ~~~l~~~-----~~v~~i~~s~dg~~Las~dg~v~lwdl~~~~~l~~~~~-----~~v~~v~ws~dg~~la~~s~~~i~i 515 (1208)
-..+..+ ..+.++.+.+++.+++.+.....+.....|+.-..... .....+.|..+++.++++..-.|.-
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~ 327 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR 327 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence 2222222 15788899999888888654444455555554443321 2466777777777666555444444
Q ss_pred Ee
Q 000961 516 AS 517 (1208)
Q Consensus 516 ~~ 517 (1208)
++
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 43
No 434
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.13 E-value=0.62 Score=54.98 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=104.0
Q ss_pred HHHHHHhCCChhhhhcccc-----Ccch------hhHHHHhcCCHHHHHHHHHHhCC----------hhHHHHHHHHHHH
Q 000961 616 MIAYLQQKGFPEVALHFVK-----DERT------RFNLALESGNIQIAVASAKEIDE----------KDHWYRLGVEALR 674 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~-----~~~~------~f~lal~~g~~~~A~~~a~~~~~----------~~~w~~La~~al~ 674 (1208)
+...+.+.|..+.|+..+. +|.. .-.+....|++++|.+..+.+-. ...|..+|...+.
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 3555677788888876544 2211 12456778999999998876421 1246678889999
Q ss_pred cCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHHHHHHHHHcC-Cc-----hhhHHHHHhcCCHHHHHHHH
Q 000961 675 QGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKN-DV-----MGQFHNALYLGDVKERVKIL 740 (1208)
Q Consensus 675 ~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~~~~~~-~~-----~~~~~~al~lgd~~~A~~i~ 740 (1208)
+|+++.|+.+|.++-.. -.+..+|...|+.++..++.+.+...+ +. ......+...|++++|++.|
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999886432 245567888999999877766554332 21 12234566789999999998
Q ss_pred HHcCC----ChHHH---HHHHhcCChHHHHHHHHHc
Q 000961 741 ESAGH----LPLAY---ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 741 ~~~g~----~~~A~---~~a~~~g~~~~a~~l~~~~ 769 (1208)
.+.-. ...+. .+....|..+.|..+.++.
T Consensus 273 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 273 RRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 87532 11222 3445678899999988863
No 435
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.11 E-value=23 Score=45.03 Aligned_cols=181 Identities=13% Similarity=0.059 Sum_probs=92.3
Q ss_pred cEEEEeCCCCeeEEEeecCCC----CEEEEEEeCCCC--EEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEE
Q 000961 271 SIRVWDVTKRTGVQTFRREHD----RFWILASHPEMN--LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYE 344 (1208)
Q Consensus 271 ~I~vwd~~~~~~~~~~~~~~~----~i~~la~sp~~~--~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d 344 (1208)
.|+++|..+++.+..+....+ .+....|+.... ++++|...+...+...- .++.++.|+
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~---------------~~g~~ytyk 918 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSI---------------SSGFVYTYK 918 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeecccccccccc---------------CCCceEEEE
Confidence 478888887777666554333 244455554332 45555544333222110 355666676
Q ss_pred ccC-CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeC
Q 000961 345 FST-QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIAR 423 (1208)
Q Consensus 345 ~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d 423 (1208)
+.. |+.+..+.-... +-.-.+..|-+.++++..+ ..+++|++..+..-... .+......|+.+++. -
T Consensus 919 ~~~~g~~lellh~T~~-------~~~v~Ai~~f~~~~LagvG---~~l~~YdlG~K~lLRk~-e~k~~p~~Is~iqt~-~ 986 (1205)
T KOG1898|consen 919 FVRNGDKLELLHKTEI-------PGPVGAICPFQGRVLAGVG---RFLRLYDLGKKKLLRKC-ELKFIPNRISSIQTY-G 986 (1205)
T ss_pred EEecCceeeeeeccCC-------CccceEEeccCCEEEEecc---cEEEEeeCChHHHHhhh-hhccCceEEEEEeec-c
Confidence 544 333222221111 1122466677777877666 79999999876432111 122233455555553 2
Q ss_pred CcEEEEEcCCCE-EEEEecCCceeeeecCCc---ceEEEEEeCCccEEEEeC--CeEEEEEc
Q 000961 424 NRFAVLDKSSNQ-VLVKNLKNEVVKKSILPI---AADAIFYAGTGNLLCRAE--DRVVIFDL 479 (1208)
Q Consensus 424 ~~~l~~~~~dg~-I~Iwdl~~~~~~~l~~~~---~v~~i~~s~dg~~Las~d--g~v~lwdl 479 (1208)
.|.++....++. ...|+-.++.+..+.... .|+.+.+-..+++ +.+| |.+.+-.+
T Consensus 987 ~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tv-agaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 987 ARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTV-AGADRFGNIAVVRI 1047 (1205)
T ss_pred eEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCce-eeccccCcEEEEEC
Confidence 244554444443 233555566666665443 5666665555444 3444 45555444
No 436
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.06 E-value=20 Score=46.44 Aligned_cols=111 Identities=9% Similarity=0.042 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCchhhhHHHHH
Q 000961 994 EEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAY 1073 (1208)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~~r~~el~~y 1073 (1208)
.-.+..|.-+...|++++|+..|++++...| ++.+ + .+.+|+. ...++. ..+.+ ..|
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P----~n~~----l--------~~~lA~l-~~~~g~----~~~A~--~~l 416 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAP----GNQG----L--------RIDYASV-LQARGW----PRAAE--NEL 416 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHH----H--------HHHHHHH-HHhcCC----HHHHH--HHH
Confidence 3345667777889999999999999999998 5421 1 1223332 222222 11211 122
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 000961 1074 FTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVL 1129 (1208)
Q Consensus 1074 ft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~ 1129 (1208)
=.-..+.|.+..+=+..|| .+.+.++|..|....+++|+..|. ....+.-++.+
T Consensus 417 ~~al~l~Pd~~~l~~~~a~-~al~~~~~~~A~~~~~~ll~~~Pd-~~~~~~~~~~~ 470 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAW-TALDLQEWRQMDVLTDDVVAREPQ-DPGVQRLARAR 470 (765)
T ss_pred HHHHhhCCCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 2344566888887778888 799999999999999999999998 44444433333
No 437
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.03 E-value=0.12 Score=39.90 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=30.5
Q ss_pred cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeE
Q 000961 50 HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1208)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1208)
...+|.+++|+|..+++|.|+.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 5544
No 438
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.98 E-value=0.16 Score=52.66 Aligned_cols=104 Identities=14% Similarity=0.207 Sum_probs=68.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEE-EccCCCCEEE-EEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCEE
Q 000961 63 QPLFVSGGDDYKIKVWNYKMHRCLFT-LLGHLDYIRT-VQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN-HYVM 139 (1208)
Q Consensus 63 ~~~Lasgs~Dg~I~vWd~~~~~~~~~-l~~h~~~I~~-v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~-~~V~ 139 (1208)
+..+++|+.+|.|.+|++........ ...-...|.+ +.--.++.+..+++.||.|+.|+..-++.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45688899999999999862211111 1111222322 2333445678899999999999999988888888887 4555
Q ss_pred EEEEeeCCCEEEEE--ECCCeEEEEECCC
Q 000961 140 CASFHPKEDLVVSA--SLDQTVRVWDIGA 166 (1208)
Q Consensus 140 ~l~~~p~~~~l~s~--s~Dg~V~vwdl~~ 166 (1208)
....+..+..+.++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555555666666 6667777777654
No 439
>PHA03098 kelch-like protein; Provisional
Probab=93.94 E-value=2.5 Score=52.39 Aligned_cols=145 Identities=10% Similarity=0.013 Sum_probs=68.8
Q ss_pred CCCEEEEEecCC------eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC-----CeEEEEECCCCeEEEE
Q 000961 20 KRPWILASLHSG------VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD-----YKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 20 dg~~Lasg~~dg------~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D-----g~I~vWd~~~~~~~~~ 88 (1208)
++..++.||.++ .+..||..+++....-.-.......-...-++.+++.||.+ ..+..||..+.+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 345556665432 57778877765533211111111111122367788888765 3577888876553321
Q ss_pred --EccCCCCEEEEEEcCCCCEEEEEECC------CcEEEEECCCCeEEEE--EecCCCCEEEEEEeeCCCEEEEEECC--
Q 000961 89 --LLGHLDYIRTVQFHHEYPWIVSASDD------QTIRIWNWQSRTCISV--LTGHNHYVMCASFHPKEDLVVSASLD-- 156 (1208)
Q Consensus 89 --l~~h~~~I~~v~fs~d~~~l~s~s~D------g~I~iwd~~s~~~i~~--l~~h~~~V~~l~~~p~~~~l~s~s~D-- 156 (1208)
+...... .+++ .-++...+.|+.+ ..+..||..+++-... +..... -.++.. .++...+.|+.+
T Consensus 374 ~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~ 449 (534)
T PHA03098 374 PPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIY-HDGKIYVIGGISYI 449 (534)
T ss_pred CCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEE-ECCEEEEECCccCC
Confidence 1111111 1222 2345556666532 4578889876543221 111111 112222 245556666532
Q ss_pred ------CeEEEEECCCCc
Q 000961 157 ------QTVRVWDIGALR 168 (1208)
Q Consensus 157 ------g~V~vwdl~~~~ 168 (1208)
..+.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCCcccceEEEecCCCCc
Confidence 137777776644
No 440
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.71 E-value=0.24 Score=55.57 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=73.2
Q ss_pred HHHHHHHhCCChhhhhccccC-----cch-----hhHHHHhcCCHHHHHHHHHH-------hCChhHHHHHHHHHHHcCC
Q 000961 615 AMIAYLQQKGFPEVALHFVKD-----ERT-----RFNLALESGNIQIAVASAKE-------IDEKDHWYRLGVEALRQGN 677 (1208)
Q Consensus 615 ~i~~yl~~~g~~e~Al~~~~~-----~~~-----~f~lal~~g~~~~A~~~a~~-------~~~~~~w~~La~~al~~g~ 677 (1208)
.++.+ ...+.++.|..+... +.. ...++...++++.+.+..+. -+++..|..+|....+.|+
T Consensus 83 ~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 83 RLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred ccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 34455 456666777665432 111 22667788999998888665 2457899999999999999
Q ss_pred hhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHHcC--C--c-hhhHHHHHhcCCHHHHHHHHHHcC
Q 000961 678 AGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKN--D--V-MGQFHNALYLGDVKERVKILESAG 744 (1208)
Q Consensus 678 ~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~~~--~--~-~~~~~~al~lgd~~~A~~i~~~~g 744 (1208)
.+.|+.+|++.=. ...+..++...|+.++++.+.+...... + . ...+..+..+|+.++|...|.+.-
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 9999999988632 1234556667899998666655443332 2 2 234455777899999999988754
Q ss_pred C
Q 000961 745 H 745 (1208)
Q Consensus 745 ~ 745 (1208)
.
T Consensus 242 ~ 242 (280)
T PF13429_consen 242 K 242 (280)
T ss_dssp H
T ss_pred c
Confidence 3
No 441
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=0.5 Score=59.26 Aligned_cols=154 Identities=9% Similarity=0.036 Sum_probs=93.1
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEECCCC-----------eEE-----EEecc-cccCEEEEEEEcCCCEEEEE--ECCC
Q 000961 13 KGLSFHSKRPWILASLHSGVIQLWDYRMG-----------TLI-----DRFDE-HDGPVRGVHFHKSQPLFVSG--GDDY 73 (1208)
Q Consensus 13 ~~lafspdg~~Lasg~~dg~I~iWd~~~g-----------~~i-----~~l~~-h~~~V~~l~fsp~~~~Lasg--s~Dg 73 (1208)
..++.++.-..+++++..+.+.|+-..+- .++ ..+.- ..-+|..+...+|+...++. +.+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 34566666666666667776777653221 111 11222 23456666667777655444 3344
Q ss_pred eEEEEECCCCeE--------EE---EEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEE
Q 000961 74 KIKVWNYKMHRC--------LF---TLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA 141 (1208)
Q Consensus 74 ~I~vWd~~~~~~--------~~---~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l 141 (1208)
.|.++|+++-.. +. +.........++.|+|.-. ..+.+..|+.|++..+........-..-...++|+
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav 204 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV 204 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence 788999864221 11 1111223456788888654 35666778999888765322221112245678999
Q ss_pred EEeeCCCEEEEEECCCeEEEEECCC
Q 000961 142 SFHPKEDLVVSASLDQTVRVWDIGA 166 (1208)
Q Consensus 142 ~~~p~~~~l~s~s~Dg~V~vwdl~~ 166 (1208)
+|+|.|..++.|...|++.-|....
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred EeccccceeeEecCCCeEEEeeccc
Confidence 9999999999999999999987654
No 442
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.67 E-value=1.3 Score=55.81 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=105.1
Q ss_pred HHHHHHhCCChhhhhcccc-----Ccchh---h---HHHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChh
Q 000961 616 MIAYLQQKGFPEVALHFVK-----DERTR---F---NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAG 679 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~-----~~~~~---f---~lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~ 679 (1208)
+..++...|.++.|+..++ +|... + .+....|+++.|.+..++ -+++..|..+|......|+++
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3444566788888887654 44321 2 345578999999987654 245889999999999999999
Q ss_pred HHHHHHHhhcCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHcCCC
Q 000961 680 IVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGHL 746 (1208)
Q Consensus 680 ~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~g~~ 746 (1208)
.|..+|.+.-+. ..+..+|...|+.++.....+.+...... .....++..+|++++|++.|.++-..
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 999999887432 23456677889999887776655433211 12334566789999999998874432
Q ss_pred h---------------HHHHHHHhcCChHHHHHHHHH
Q 000961 747 P---------------LAYITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 747 ~---------------~A~~~a~~~g~~~~a~~l~~~ 768 (1208)
. .|..+....|..++|.++.+.
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~k 533 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEK 533 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 122334445788888888876
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.60 E-value=0.99 Score=48.23 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=37.5
Q ss_pred CCeeEEEECCCCCEEEEEeCCeEEEEecCccceeeeecc-eeeeeeEEe
Q 000961 491 PFVKYVVWSNDMESVALLSKHAIIIASKKLVHQCTLHET-IRVKSGAWD 538 (1208)
Q Consensus 491 ~~v~~v~ws~dg~~la~~s~~~i~i~~~~~~~~~~~~e~-~~iks~~wd 538 (1208)
..|..+..+.+|.-+++.++...|.|+.++.....+.|. -.+.+..|+
T Consensus 67 ~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W~~vsd~w~~~~S~~~~ 115 (219)
T PF07569_consen 67 PNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCWIRVSDSWWAIGSQYWD 115 (219)
T ss_pred CcEEEEEEcCCCCEEEEEeCCCEEEeccccceeEEeccchhhhhccccc
Confidence 467888889999989888888899999999999888774 333444553
No 444
>PLN03077 Protein ECB2; Provisional
Probab=93.58 E-value=0.75 Score=60.60 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=91.2
Q ss_pred HHHHhcCCHHHHHHHHHHhCC--hhHHHHHHHHHHHcCChhHHHHHHHhhcC---------cchhHHHHHhcCCHHHHHH
Q 000961 641 NLALESGNIQIAVASAKEIDE--KDHWYRLGVEALRQGNAGIVEYAYQRTKN---------FERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~~~--~~~w~~La~~al~~g~~~~Ae~~y~~~~d---------~~~l~~l~~~~g~~~kl~k 709 (1208)
.++.++|+++.|.+...++.. ...|..|.....+.|+++.|.+.|.++.. |..+...+...|+.++..+
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 556678888888888877643 45788888888888888888888887642 2334445566788888887
Q ss_pred HHHHHHHcCCc------hhhHHHHHhcCCHHHHHHHHHHcCCChH-----HHHHHHhcCChHHHHHHHHHcC
Q 000961 710 MLKIAEVKNDV------MGQFHNALYLGDVKERVKILESAGHLPL-----AYITASVHGLQDVAERLAAELG 770 (1208)
Q Consensus 710 ~~~~~~~~~~~------~~~~~~al~lgd~~~A~~i~~~~g~~~~-----A~~~a~~~g~~~~a~~l~~~~~ 770 (1208)
+.+.....|-. +.....+...|++++|.++|.+....+. -+.....+|..++|.++.+++.
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77766666543 2233446667888888888888766432 2233456788888888888753
No 445
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.57 E-value=11 Score=39.51 Aligned_cols=94 Identities=9% Similarity=-0.016 Sum_probs=64.6
Q ss_pred EEEEEcCCCCEEEEE-eCCCcEEEEE--CCCCcee---EEEeecC----cCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000961 208 NWAAFHPTLPLIVSG-ADDRQVKLWR--MNETKAW---EVDTLRG----HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 208 ~~l~~sp~g~~L~sg-s~dg~I~iwd--~~~~~~~---~~~~l~~----h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
+.++|+.+.+.+... +.+-.|.-|| ..++... .+..++. ..-....++...+|++.++.-..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 457888776655443 4566676677 4444321 1222322 1112334556678898899888999999999
Q ss_pred CCCeeEEEeecCCCCEEEEEEeCC
Q 000961 278 TKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
.+|+.+.+++....++++.+|-..
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCC
Confidence 999999999999999999998754
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.44 E-value=17 Score=45.95 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------Cce-eEEEee--------cCcCCCeEEEEEccC---CCE
Q 000961 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNE----------TKA-WEVDTL--------RGHMNNVSCVMFHAK---QDI 262 (1208)
Q Consensus 205 ~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~----------~~~-~~~~~l--------~~h~~~V~~l~~sp~---g~~ 262 (1208)
-.|..+.++|+|.+++..|..|...+ .+.. ++. ....+. ..+...|..+.|||. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46888999999999999988764433 3321 111 111111 234557889999996 589
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 000961 263 IVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 263 l~sgs~dg~I~vwd~~~~ 280 (1208)
|++-+.|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999753
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.36 E-value=6.9 Score=40.91 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=92.2
Q ss_pred eEEecC-CEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCC-C---EEEEEEcc
Q 000961 324 AFAVSG-DSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG-G---SYELYVIP 397 (1208)
Q Consensus 324 ~~s~~~-~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~-g---~v~l~~l~ 397 (1208)
.+...| +.|+.+ ..+.|.+|++.+........+... +.+..+.++..|++++..-.... . .+++|--.
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NW 95 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNW 95 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch------hheeEEEeccccceEEEEEeecCCccceEEEEEEEh
Confidence 333344 566665 788899999996666566666543 28889999999999987654322 2 45665432
Q ss_pred CCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-CceeeeecCCcceEEEEEeCC-ccEEEEeCCeEE
Q 000961 398 KDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPIAADAIFYAGT-GNLLCRAEDRVV 475 (1208)
Q Consensus 398 ~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~l~~~~~v~~i~~s~d-g~~Las~dg~v~ 475 (1208)
.... ....++. +... |. -+..+..+.. . .-.+-.++...++.+++-.|. |.+++..++.+.
T Consensus 96 r~~~--------~~~~~v~-vRia--G~-~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~ 158 (215)
T PF14761_consen 96 RSQK--------EENSPVR-VRIA--GH-RVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLV 158 (215)
T ss_pred hhhc--------ccCCcEE-EEEc--cc-ccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEE
Confidence 2110 0111111 1110 10 0011101100 0 012233444447778887774 999999999999
Q ss_pred EEEcCCCeE-EEEE---eC----------CCeeEEEECCCCCEEEEEeCCeEEEEe
Q 000961 476 IFDLQQRLV-LGDL---QT----------PFVKYVVWSNDMESVALLSKHAIIIAS 517 (1208)
Q Consensus 476 lwdl~~~~~-l~~~---~~----------~~v~~v~ws~dg~~la~~s~~~i~i~~ 517 (1208)
+|.+..+.. ...+ .. -.++.+++- +.|+|+.++..+.++.
T Consensus 159 lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlk 212 (215)
T PF14761_consen 159 LFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLK 212 (215)
T ss_pred EEEEEEEEEecccccEEechhhhhheecCceEEEEEEE--eeEEEEecCCEEEEEE
Confidence 998865544 1111 11 113344443 5678888777766643
No 448
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.23 E-value=0.61 Score=58.54 Aligned_cols=145 Identities=11% Similarity=0.030 Sum_probs=91.8
Q ss_pred CEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEE-----E------EEecCCCCEEEEEEeeCC-CEEEEEECCCeEE
Q 000961 95 YIRTVQFHHEYPWIVSAS--DDQTIRIWNWQSRTCI-----S------VLTGHNHYVMCASFHPKE-DLVVSASLDQTVR 160 (1208)
Q Consensus 95 ~I~~v~fs~d~~~l~s~s--~Dg~I~iwd~~s~~~i-----~------~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~ 160 (1208)
+|..+..++|+...++.. .+-.|..||+.+-..- . +.......+.++.|+|.- ...+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 555666667766544433 3347888998642211 1 111233456788999864 3456667789998
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~ 240 (1208)
|..+........ -..-...+++++|+|.|+.+++|...|++.-|.........
T Consensus 182 V~~~~~~~~~v~---------------------------s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 182 VKSTKQLAQNVT---------------------------SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred hhhhhhhhhhhc---------------------------ccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence 887754332211 01234567899999999999999999999998766543211
Q ss_pred EEeecCc-CCCeEEEEEccCCCEEEEE
Q 000961 241 VDTLRGH-MNNVSCVMFHAKQDIIVSN 266 (1208)
Q Consensus 241 ~~~l~~h-~~~V~~l~~sp~g~~l~sg 266 (1208)
+...... ...|.+++|-....++++-
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEe
Confidence 2222222 4679999998877777654
No 449
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.13 E-value=0.34 Score=50.51 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=107.4
Q ss_pred HHHHHhhcccccccchHHHHHHHhCCChhhhhcccc-----Ccc-----hhhH-HHHhcCCHHHHHHHHHH-hCC-----
Q 000961 599 YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVK-----DER-----TRFN-LALESGNIQIAVASAKE-IDE----- 661 (1208)
Q Consensus 599 ~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~-----~~~-----~~f~-lal~~g~~~~A~~~a~~-~~~----- 661 (1208)
+++.+..-++..+.-..++.|.++.|..+.|.+.+. +|+ ..|. +.-..|.+++|...-.. +.+
T Consensus 58 lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~ 137 (250)
T COG3063 58 LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE 137 (250)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC
Confidence 678888877777656667888899998888776433 232 2342 33446788888877543 444
Q ss_pred -hhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHH
Q 000961 662 -KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKIL 740 (1208)
Q Consensus 662 -~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~ 740 (1208)
...|+++|--++++|+.+.|++.|++. |+....+...+.+|+.....+|++..+-..+ .++..+..
T Consensus 138 ~s~t~eN~G~Cal~~gq~~~A~~~l~ra--------L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~---~~~~~~~~-- 204 (250)
T COG3063 138 PSDTLENLGLCALKAGQFDQAEEYLKRA--------LELDPQFPPALLELARLHYKAGDYAPARLYL---ERYQQRGG-- 204 (250)
T ss_pred cchhhhhhHHHHhhcCCchhHHHHHHHH--------HHhCcCCChHHHHHHHHHHhcccchHHHHHH---HHHHhccc--
Confidence 468999999999999999999999987 4444555566777777777777775542222 11111111
Q ss_pred HHcCCChHHHHHHHhcCChHHHHHHHHHc
Q 000961 741 ESAGHLPLAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 741 ~~~g~~~~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
..+..+-+++++++..|+-+.+.+.-.++
T Consensus 205 ~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 205 AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 12223457889999999998888776664
No 450
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.09 E-value=23 Score=41.72 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=88.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCe-----EEEEecccccCEEEEEEEc-----CCCEEEEEECCCeEEEEECCC--Ce---
Q 000961 20 KRPWILASLHSGVIQLWDYRMGT-----LIDRFDEHDGPVRGVHFHK-----SQPLFVSGGDDYKIKVWNYKM--HR--- 84 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~-----~i~~l~~h~~~V~~l~fsp-----~~~~Lasgs~Dg~I~vWd~~~--~~--- 84 (1208)
+...|++|+.+|.++||+...+. ++-+ ..-..||..+..-+ +...||+ =.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999975432 1111 23467888887643 2234444 3446788887731 11
Q ss_pred ----EEEEEccCCC--CEEEEEEcC----C-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEE
Q 000961 85 ----CLFTLLGHLD--YIRTVQFHH----E-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA 153 (1208)
Q Consensus 85 ----~~~~l~~h~~--~I~~v~fs~----d-~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~ 153 (1208)
.+..+..|.- ....+++-| . ..+|.+-+.||.+.+++-+.-.....+.+ .--.-.+.|.+..+.++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 1222222322 122222222 1 35788889999999999655443444433 2223457788888999999
Q ss_pred ECCCeEEEEECCC
Q 000961 154 SLDQTVRVWDIGA 166 (1208)
Q Consensus 154 s~Dg~V~vwdl~~ 166 (1208)
+.+..+.-|....
T Consensus 193 sss~~l~~Yky~~ 205 (418)
T PF14727_consen 193 SSSWTLECYKYQD 205 (418)
T ss_pred cCceeEEEecHHH
Confidence 9999999998644
No 451
>PLN03077 Protein ECB2; Provisional
Probab=93.02 E-value=1 Score=59.27 Aligned_cols=130 Identities=9% Similarity=-0.049 Sum_probs=73.5
Q ss_pred HHHHhcCCHHHHHHHHHHhCC--hhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHH
Q 000961 641 NLALESGNIQIAVASAKEIDE--KDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKM 710 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~~~--~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~ 710 (1208)
+++.++|+++.|.+..+++.. ...|..+-......|+++.|...|.++.. |..+.-.+...|+.+..+.+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 445556666666666555433 23466666666666666666666665531 11222233445555555555
Q ss_pred HHHHHHcCCc------hhhHHHHHhcCCHHHHHHHHHHcCC----ChHHHHHHHhcCChHHHHHHHHHcC
Q 000961 711 LKIAEVKNDV------MGQFHNALYLGDVKERVKILESAGH----LPLAYITASVHGLQDVAERLAAELG 770 (1208)
Q Consensus 711 ~~~~~~~~~~------~~~~~~al~lgd~~~A~~i~~~~g~----~~~A~~~a~~~g~~~~a~~l~~~~~ 770 (1208)
.......|-. +.....+...|++++|.++|.+... |..-+..+..+|..++|.++.+++.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444321 2233445566788888877777622 2222345567899999999999864
No 452
>PHA03098 kelch-like protein; Provisional
Probab=92.97 E-value=2.9 Score=51.69 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=51.7
Q ss_pred cCCCEEEEEECCC------eEEEEECCCCeEEEE--EccCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeE
Q 000961 61 KSQPLFVSGGDDY------KIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQSRTC 127 (1208)
Q Consensus 61 p~~~~Lasgs~Dg------~I~vWd~~~~~~~~~--l~~h~~~I~~v~fs~d~~~l~s~s~D-----g~I~iwd~~s~~~ 127 (1208)
.++..++.||.++ .+..||..+.+.... +.........+. -++..++.|+.+ ..+..||..+++-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 4566777776542 577888877655321 111111122222 256666677654 3577788776543
Q ss_pred EE--EEecCCCCEEEEEEeeCCCEEEEEECC------CeEEEEECCCCc
Q 000961 128 IS--VLTGHNHYVMCASFHPKEDLVVSASLD------QTVRVWDIGALR 168 (1208)
Q Consensus 128 i~--~l~~h~~~V~~l~~~p~~~~l~s~s~D------g~V~vwdl~~~~ 168 (1208)
.. .+. +...-.+++. -++...+.|+.+ ..+..||..+.+
T Consensus 371 ~~~~~lp-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 371 REEPPLI-FPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeCCCcC-cCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 22 111 1111112222 245666666632 357778876644
No 453
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.77 E-value=2 Score=58.52 Aligned_cols=127 Identities=17% Similarity=0.057 Sum_probs=93.3
Q ss_pred HHhcCCHHHHHHHHHHh-CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHHHHHH
Q 000961 643 ALESGNIQIAVASAKEI-DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKI 713 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~ 713 (1208)
..+.|++++|.++.+.. +++..+..||...++.|+++.|+.+|++.-.. ..+..+|...|+.++..++.+.
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45678888888887754 34678889999999999999999999876432 3456678889999998887776
Q ss_pred HHHcC-C-ch---hhHHHHHhcCCHHHHHHHHHHcCCC-----h---HH------HHHHHhcCChHHHHHHHHHc
Q 000961 714 AEVKN-D-VM---GQFHNALYLGDVKERVKILESAGHL-----P---LA------YITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 714 ~~~~~-~-~~---~~~~~al~lgd~~~A~~i~~~~g~~-----~---~A------~~~a~~~g~~~~a~~l~~~~ 769 (1208)
..... + .. ....++...|++++|+++|.+.-.. + .| ..+++..|.+++|.++.++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54432 2 11 2234566789999999999986432 1 12 34578889999999997765
No 454
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=8 Score=47.16 Aligned_cols=473 Identities=11% Similarity=0.063 Sum_probs=223.7
Q ss_pred CcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceE----------------EecCCEEE
Q 000961 270 KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAF----------------AVSGDSLF 333 (1208)
Q Consensus 270 g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~----------------s~~~~~L~ 333 (1208)
-.|+||+. +|..+..+...++++-.+.|+.+..++.+.-++.+.++.+..+.... ...++..+
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav 142 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV 142 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence 35888886 47777776666668889999999999999998889998776543311 11222222
Q ss_pred EEeCCeEEEE-EccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCE--EEEEEecCCCEEEEEEccCCCCCCCcccccc
Q 000961 334 YAKDRFLRYY-EFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENA--VLICSDVDGGSYELYVIPKDSIGRGDSVQDA 410 (1208)
Q Consensus 334 ~~~d~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~--llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~ 410 (1208)
...++.+.+- ++..........++ +. ..+..+....+++.. +++.-.-.. -..++...... .+.. .+..
T Consensus 143 lt~~g~v~~i~~~~~~~~~~~~diP--~~---~~~~~~Wt~~~~~~~~~~ll~v~~~v-~~~~~q~~~~~-~q~~-~~~~ 214 (829)
T KOG2280|consen 143 LTVSGQVILINGVEEPKLRKMPDIP--YN---ELPKSCWTVFQPHRQSTILLDVDVAV-GLHICQVEESR-VQLH-ALSW 214 (829)
T ss_pred EecCCcEEEEcCCCcchhhhCCCCC--Cc---cCCCcceeEecCCCcceeEEeechhh-hhcccceeccc-cccc-ccCC
Confidence 2233333322 22221111111111 11 112233333333221 111101000 01122221111 1111 1222
Q ss_pred cCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-Cceeeeec--CCcceEEEEEeCCccEEEEeCCeEEEEEcCCCeEEEE
Q 000961 411 KKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSI--LPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGD 487 (1208)
Q Consensus 411 ~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~l~--~~~~v~~i~~s~dg~~Las~dg~v~lwdl~~~~~l~~ 487 (1208)
..+.+..+..|++.++++.-...|.|.+-+.+ .+....+. .+.+...|+|..+...+++-+..+.++.-....
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~---- 290 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDS---- 290 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCc----
Confidence 23567788999999999988889999998887 55555554 333556788888776666655555555433222
Q ss_pred EeCCCeeEEEECCCCCEEEEEeCCeEEEEecC-ccceeeeec-ceeeeeeEEecCCeEEEecCCee--------eeEe--
Q 000961 488 LQTPFVKYVVWSNDMESVALLSKHAIIIASKK-LVHQCTLHE-TIRVKSGAWDDNGVFIYTTLNHI--------KYCL-- 555 (1208)
Q Consensus 488 ~~~~~v~~v~ws~dg~~la~~s~~~i~i~~~~-~~~~~~~~e-~~~iks~~wd~~~~~iy~t~~~i--------~y~l-- 555 (1208)
|.|--|...+.+..-||+.|++.. .+.+..++. ++.|-...=.+++.++|-...+. +|+.
T Consensus 291 --------V~f~yd~t~~l~~E~DGVRI~t~t~~EFl~rvp~~~enIF~igS~ePgA~L~eA~q~~e~~S~kade~L~~~ 362 (829)
T KOG2280|consen 291 --------VQFYYDETAILSAEVDGVRIITSTSHEFLQRVPAETENIFKIGSTEPGALLYEAFQKMEQKSGKADEYLSEI 362 (829)
T ss_pred --------cccccCCCceeeeccCeeEEeccchHHHHHhCChhhhhHhhcCCCCchHHHHHHHHHHhhcchhhHHHHHHH
Confidence 222222222233333444444332 112222211 00000000001122222110000 0000
Q ss_pred cC-CceeEEEeccccEEEEEEe-CCEEEEEecCCceEEEEcChhhHHHHHhhccccc------------------ccchH
Q 000961 556 PN-GDSGIIRTLDVPIYITKVS-GNTIFCLDRDGKNRAIVIDATEYDHVMSMIRNSQ------------------LCGQA 615 (1208)
Q Consensus 556 ~~-g~~g~i~~l~~~~~l~~~~-~~~l~~l~r~~~~~~~~ld~~e~~~~l~~i~~~~------------------~~~~~ 615 (1208)
.. -+.++-.++....+-.... .+.+.---+=|+......++.||..+.+.++.-+ +--.-
T Consensus 363 ~e~L~~aV~~CI~aA~~ef~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~ 442 (829)
T KOG2280|consen 363 REDLYKAVDDCIEAACDEFQPEEQKSLLRAASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEV 442 (829)
T ss_pred HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhh
Confidence 00 0000000000000000000 0000000012233333344555433322222110 00122
Q ss_pred HHHHHHhCCChhhhhccccCcchhhHH-----------HH---hcCCHHHHHHHHHHhCC----hhHHHHHHHHHHHcCC
Q 000961 616 MIAYLQQKGFPEVALHFVKDERTRFNL-----------AL---ESGNIQIAVASAKEIDE----KDHWYRLGVEALRQGN 677 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~~~~~~f~l-----------al---~~g~~~~A~~~a~~~~~----~~~w~~La~~al~~g~ 677 (1208)
++.-|...+.+.+|.+..+=....+.. .+ +..+-+.+-.+-+++.. .--+...|..|...|.
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 444455555566666544322222211 11 12233333333344443 2346778999999999
Q ss_pred hhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcC
Q 000961 678 AGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHG 757 (1208)
Q Consensus 678 ~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g 757 (1208)
.+.|.+....-.+-..-.-+.+-.++.+..- +.+...||...-+++.+.+.+-.-+-.++......++|.-+++...
T Consensus 523 ~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL---~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~ 599 (829)
T KOG2280|consen 523 FELARKLLELEPRSGEQVPLLLKMKDSSLAL---KKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFM 599 (829)
T ss_pred HHHHHHHHhcCCCccchhHHHhccchHHHHH---HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 9999998877766655555555555554433 2455789998888888888888888899999999999998887765
Q ss_pred ChHHHHHHH
Q 000961 758 LQDVAERLA 766 (1208)
Q Consensus 758 ~~~~a~~l~ 766 (1208)
..+.-..+.
T Consensus 600 r~~~~~~l~ 608 (829)
T KOG2280|consen 600 RHQDRATLY 608 (829)
T ss_pred Hhhchhhhh
Confidence 544333333
No 455
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.39 E-value=2.1 Score=52.32 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=76.4
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEec-ccccCEEEEEEE--cCCCEEEEEECCCeEEEEECC
Q 000961 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFH--KSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fs--p~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
+++--...+-+.-|.-++..++-.....+.|||.+.+.+..+-. ...++|..++|. |+++.+++.|..+.|.++.-.
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33334445555555555544444445679999998887554332 467899999995 688888888888999998531
Q ss_pred -----C----CeEEEE--EccCC-CCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000961 82 -----M----HRCLFT--LLGHL-DYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 82 -----~----~~~~~~--l~~h~-~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1208)
+ ...+.. +..|+ .+|.+..|.++|..++.+ ++.+.|+|-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 122332 23444 589999999999654443 356777763
No 456
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.08 E-value=2.7 Score=44.76 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=86.9
Q ss_pred HHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHH
Q 000961 643 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k 709 (1208)
....|+++.|.+..++. ++...|..+|..+..+|+++.|++.|.+.-.. -.+..+|...|+.++..+
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 34567777777665531 34678899999999999999999999876432 234556778999999887
Q ss_pred HHHHHHHcCCc-------hhhHHHHHhcCCHHHHHHHHHHcCCC----hHHH----HHHHhcCChHHHHHHHHHc
Q 000961 710 MLKIAEVKNDV-------MGQFHNALYLGDVKERVKILESAGHL----PLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 710 ~~~~~~~~~~~-------~~~~~~al~lgd~~~A~~i~~~~g~~----~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
..+.+...... .....++...|++++|++.|.++-.. ..++ .+....|.++.|.+..++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77666543211 12334567789999999998765321 1222 3445578888888888764
No 457
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.97 E-value=3 Score=47.32 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=76.8
Q ss_pred HHHHhcCCHHHHHHHHHH--hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCc-chhHHHHHhcCCHHHHHHHHHHHHHc
Q 000961 641 NLALESGNIQIAVASAKE--IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF-ERLSFLYLITGNMDKLSKMLKIAEVK 717 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~--~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~-~~l~~l~~~~g~~~kl~k~~~~~~~~ 717 (1208)
...+..|+...|-.+.++ ++++..|-.--+.....++|+.-++....-+-. ..-.|+ +.....
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv--------------~~~~~~ 250 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFV--------------EACLKY 250 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHH--------------HHHHHC
Confidence 556778888888888876 566777766666667778888777643321111 111111 111223
Q ss_pred CCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCC
Q 000961 718 NDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDN 772 (1208)
Q Consensus 718 ~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~ 772 (1208)
|....+...--...+ ++++++|+++|.|.+|.+.|...++.+.-..|.+...++
T Consensus 251 ~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 251 GNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGN 304 (319)
T ss_pred CCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCC
Confidence 333332222223556 999999999999999999999999999999998875443
No 458
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.97 E-value=18 Score=37.96 Aligned_cols=213 Identities=11% Similarity=0.099 Sum_probs=110.1
Q ss_pred EEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCC---CEEEEEECCCeEEEEEC--CCCeEEEEEc---c--C
Q 000961 23 WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQ---PLFVSGGDDYKIKVWNY--KMHRCLFTLL---G--H 92 (1208)
Q Consensus 23 ~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~---~~Lasgs~Dg~I~vWd~--~~~~~~~~l~---~--h 92 (1208)
++.+--..|.|.-||+.+.+..+.- -...++.++.+--.+ .+.+.++..-.|.=||. +.-....++. . .
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 4444445677777887765433321 111224444453222 23444444444555773 2333333321 1 1
Q ss_pred CCCEEEEEEcCCCCEEEEEECC---------CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEE-EEECCCeEEEE
Q 000961 93 LDYIRTVQFHHEYPWIVSASDD---------QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV-SASLDQTVRVW 162 (1208)
Q Consensus 93 ~~~I~~v~fs~d~~~l~s~s~D---------g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~-s~s~Dg~V~vw 162 (1208)
......-..+|+|++.+-.-.| |.++.|-. +..+..+...-.--..++|+.+.+.+. +-+.+-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 2344556678999874322221 33444432 222222322233345688887765544 45567778778
Q ss_pred E--CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 000961 163 D--IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 240 (1208)
Q Consensus 163 d--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~ 240 (1208)
| ..++..... ...+.+...+ . ..+ ..--.++...+|.+.++.-..++|...|..+++.
T Consensus 186 dyd~~tG~~snr---~~i~dlrk~~-------------~-~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~-- 245 (310)
T KOG4499|consen 186 DYDCPTGDLSNR---KVIFDLRKSQ-------------P-FES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI-- 245 (310)
T ss_pred ecCCCcccccCc---ceeEEeccCC-------------C-cCC-CCCCcceEccCCcEEEEEecCcEEEEECCCCCcE--
Confidence 8 444332110 0011110000 0 001 0112345566888889888999999999999998
Q ss_pred EEeecCcCCCeEEEEEcc
Q 000961 241 VDTLRGHMNNVSCVMFHA 258 (1208)
Q Consensus 241 ~~~l~~h~~~V~~l~~sp 258 (1208)
+.++.-....|+|++|--
T Consensus 246 L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 246 LLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEEcCCCceEEEEecC
Confidence 555555588899999974
No 459
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.84 E-value=2.7 Score=55.38 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=34.7
Q ss_pred HHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHH
Q 000961 643 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k 709 (1208)
....|+++.|.+..+.. +++..|..+|......|+++.|..+|.+.-. +..+..+|...|+.++..+
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 34456666665555432 2345566666666666666666665554311 1223334444555555444
Q ss_pred HH
Q 000961 710 ML 711 (1208)
Q Consensus 710 ~~ 711 (1208)
..
T Consensus 657 ~~ 658 (899)
T TIGR02917 657 SL 658 (899)
T ss_pred HH
Confidence 43
No 460
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.79 E-value=4.7 Score=47.12 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=81.1
Q ss_pred CCEEEEEEeCCCCEEEEEe-----------cCC-eEEEEECCC--Ce--EEEEecccccCEEEEEEEcCCCEEEEEECCC
Q 000961 10 NRVKGLSFHSKRPWILASL-----------HSG-VIQLWDYRM--GT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY 73 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~-----------~dg-~I~iWd~~~--g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg 73 (1208)
.....|+|.++|++.++-. ..+ .|.+++-.+ |+ ....+...-...+++++.+++ ++++ +..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-
Confidence 4567899999999776643 223 787776443 33 223443334456889999998 5554 333
Q ss_pred eEEEE-ECCC-------CeEEE-EEcc----CCCCEEEEEEcCCCCEEEEEECC-------------------CcEEEEE
Q 000961 74 KIKVW-NYKM-------HRCLF-TLLG----HLDYIRTVQFHHEYPWIVSASDD-------------------QTIRIWN 121 (1208)
Q Consensus 74 ~I~vW-d~~~-------~~~~~-~l~~----h~~~I~~v~fs~d~~~l~s~s~D-------------------g~I~iwd 121 (1208)
.|..| |... .+.+. .+.. +......+.|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 44444 4421 11222 2222 23447789999999765544421 3455556
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE
Q 000961 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s 154 (1208)
..+++....-.++ .....++|+|+|+++++-.
T Consensus 171 pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 5554433222333 3456789999888766543
No 461
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.79 E-value=2.5 Score=55.81 Aligned_cols=172 Identities=16% Similarity=0.105 Sum_probs=112.2
Q ss_pred HHHHHhhcccccccchHHHHHHHhCCChhhhhccccC-----cch------hhHHHHhcCCHHHHHHHHHHh-----CCh
Q 000961 599 YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKD-----ERT------RFNLALESGNIQIAVASAKEI-----DEK 662 (1208)
Q Consensus 599 ~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~~-----~~~------~f~lal~~g~~~~A~~~a~~~-----~~~ 662 (1208)
|.+.+..-+.....-..+...+...|.++.|...+.. |.. .-.+....|+++.|.....+. ++.
T Consensus 488 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 567 (899)
T TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567 (899)
T ss_pred HHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 5555554433332223455566777888887776542 221 124556689999999887653 345
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHHcCC-c----hhhHHHHHh
Q 000961 663 DHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKND-V----MGQFHNALY 729 (1208)
Q Consensus 663 ~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~~~~-~----~~~~~~al~ 729 (1208)
..|..++.....+|+++.|...|.+.-+ +..+..+|...|+.++....-+....... . .....++..
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 7788999999999999999999988642 34456778889999987766554433222 1 223344566
Q ss_pred cCCHHHHHHHHHHcCCCh--------HHHHHHHhcCChHHHHHHHHHcC
Q 000961 730 LGDVKERVKILESAGHLP--------LAYITASVHGLQDVAERLAAELG 770 (1208)
Q Consensus 730 lgd~~~A~~i~~~~g~~~--------~A~~~a~~~g~~~~a~~l~~~~~ 770 (1208)
.|++++|.++|.+.-... ....+....|.+++|.++.+.+.
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999987753221 12234456778888888877764
No 462
>PRK12370 invasion protein regulator; Provisional
Probab=91.75 E-value=2 Score=53.27 Aligned_cols=124 Identities=10% Similarity=0.178 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHH---h--CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHH
Q 000961 647 GNIQIAVASAKE---I--DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKI 713 (1208)
Q Consensus 647 g~~~~A~~~a~~---~--~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~ 713 (1208)
++++.|...+++ + +++..|..+|.....+|+++.|+.+|.+.-. +..+..+|...|+.++.....+.
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 446777776653 2 3577888888888888999999998887421 23345567778888877666555
Q ss_pred HHHcCCch-h----hHHHHHhcCCHHHHHHHHHHcC-----CChHH-HHHH---HhcCChHHHHHHHHHcC
Q 000961 714 AEVKNDVM-G----QFHNALYLGDVKERVKILESAG-----HLPLA-YITA---SVHGLQDVAERLAAELG 770 (1208)
Q Consensus 714 ~~~~~~~~-~----~~~~al~lgd~~~A~~i~~~~g-----~~~~A-~~~a---~~~g~~~~a~~l~~~~~ 770 (1208)
+....-.. . ....+.+.|++++|+..+.+.- ..+.+ ..++ ...|..++|.+.++.+.
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 54332221 1 1123555788999988886641 11222 1222 34688888888887753
No 463
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.75 E-value=34 Score=40.70 Aligned_cols=267 Identities=12% Similarity=0.056 Sum_probs=128.2
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccc-cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHD-GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~-~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
..+|..+.+...|. +.+|+.+| +..||..+++.++.-.... .+|..+.-+-.|. |.+|+++| |.+.+.+..+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccc
Confidence 46788888888774 66777777 7778888888887665443 6677776666654 66777776 6666655422211
Q ss_pred EEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCC--CCEEEEEEeeCCCEEEEEECCCeEEEEE
Q 000961 88 TLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLTGHN--HYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 88 ~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-i~~l~~h~--~~V~~l~~~p~~~~l~s~s~Dg~V~vwd 163 (1208)
-.. -....|..+.-..+| .+-.|+..|..+. ....+.. +...+-|. +.|.++.-..+| .+-+++.+|.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCC-CEeeeccCceEEEec
Confidence 111 112233333322333 3444554443322 2222221 11222222 234445444444 477777777666544
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCe-EEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeE
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV-NWAAFHP--TLPLIVSGADDRQVKLWRMNETKAWE 240 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~sp--~g~~L~sgs~dg~I~iwd~~~~~~~~ 240 (1208)
-.-..... +...++.+ -..+..| .+..+-.....|.+.+-+-.++..+.
T Consensus 317 a~w~~ma~----------------------------in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~ 368 (671)
T COG3292 317 ADWKRMAV----------------------------INDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVR 368 (671)
T ss_pred chhhheee----------------------------eecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEE
Confidence 32111000 00000100 0011111 11111111112223333333333311
Q ss_pred -EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEee-cCCCCEEEEEEeCCCCEEEEEECCCee
Q 000961 241 -VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFR-REHDRFWILASHPEMNLLAAGHDSGMI 314 (1208)
Q Consensus 241 -~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~-~~~~~~~~-~~~~~i~~la~sp~~~~la~g~~~gi~ 314 (1208)
+...+ ..+|+.+++..+| .+-.++...-+..|+..+ +....... ...+++..+--.|+++ +-.|+.+|+.
T Consensus 369 sv~q~R--g~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glv 441 (671)
T COG3292 369 SVHQLR--GMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLV 441 (671)
T ss_pred Eeeecc--ccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeE
Confidence 22222 3567777777744 455566654466677665 33332222 2345677888888888 6667666643
No 464
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.64 E-value=0.13 Score=62.31 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=70.8
Q ss_pred cccccCEEEEEEEc-CCCEEEEEECCCeEEEEECC--CCeEEEEE-----ccCCCCEEEEEEcC---CCCEEEEEECCCc
Q 000961 48 DEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYK--MHRCLFTL-----LGHLDYIRTVQFHH---EYPWIVSASDDQT 116 (1208)
Q Consensus 48 ~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~--~~~~~~~l-----~~h~~~I~~v~fs~---d~~~l~s~s~Dg~ 116 (1208)
++..+.|-.+.|-. +.+.+. -.-|...||++. .|+....+ .....++.-+.|.| +.-++..+-.+++
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 45667777777732 222222 223678899876 34433222 23334556666665 5557777778899
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEE-----------EeeCCCEEEEEECCCeEEEEEC
Q 000961 117 IRIWNWQSRTCISVLTGHNHYVMCAS-----------FHPKEDLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 117 I~iwd~~s~~~i~~l~~h~~~V~~l~-----------~~p~~~~l~s~s~Dg~V~vwdl 164 (1208)
|++.++..... ..+.+|...++.++ .+|||+.++.++.||.++.|.+
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 99888764322 44455776665544 5778888888888888888865
No 465
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=91.54 E-value=3.7 Score=52.06 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=99.6
Q ss_pred HHhCCChhhhhcccc-----Ccchh---h---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHH
Q 000961 620 LQQKGFPEVALHFVK-----DERTR---F---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEY 683 (1208)
Q Consensus 620 l~~~g~~e~Al~~~~-----~~~~~---f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~ 683 (1208)
+.+.|.++.|+.++. .|... . -..+..|+++.|.+..++. +++..|..+|..+...|+++.|..
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 455677777776644 22221 1 3345589999999988764 457899999999999999999999
Q ss_pred HHHhhcCc--------chhHHHHHhcCCHHHHHHHHHHH-HHcCCchhhH---HHHHhcCCHHHHHHHHHHcCCC-----
Q 000961 684 AYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIA-EVKNDVMGQF---HNALYLGDVKERVKILESAGHL----- 746 (1208)
Q Consensus 684 ~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~~-~~~~~~~~~~---~~al~lgd~~~A~~i~~~~g~~----- 746 (1208)
+|.+.-.. ..+..+|...|+.++.....+.. ....+...+. ..++..|++++|+..|.+.-..
T Consensus 132 ~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 132 LAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALER 211 (656)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 99886332 34556788899999877655433 2222222211 1355679999999998773221
Q ss_pred -h---HHHHHHHhcCChHHHHHHHHHc
Q 000961 747 -P---LAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 747 -~---~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
. .+.......|..++|.+..+..
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 1123445678888888888763
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.48 E-value=2.5 Score=48.06 Aligned_cols=139 Identities=10% Similarity=0.099 Sum_probs=86.2
Q ss_pred eEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeee
Q 000961 369 RTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKK 448 (1208)
Q Consensus 369 ~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~ 448 (1208)
+.+-|...++.++.+.. |.+.=|...+.........-....|.|.++.||+|++.++.-..+.+|.+++..+...+.
T Consensus 26 ngvFfDDaNkqlfavrS---ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRS---GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEEEec---CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555544454443333 334445444333221211123455699999999999999999999999999996332221
Q ss_pred e-----cCCc-ceEEEEEeCCccEEEEeCCeEEEEEcCCC-eEEEEEeC--CCeeEEEECCCCCEEEEEeC
Q 000961 449 S-----ILPI-AADAIFYAGTGNLLCRAEDRVVIFDLQQR-LVLGDLQT--PFVKYVVWSNDMESVALLSK 510 (1208)
Q Consensus 449 l-----~~~~-~v~~i~~s~dg~~Las~dg~v~lwdl~~~-~~l~~~~~--~~v~~v~ws~dg~~la~~s~ 510 (1208)
. +... .|...+|+.+..+.+..+..+.+|-+... +.+...+. -+|++..|.++-+.+..++.
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 1 1112 68899999886666777888888866432 22222222 46889999998876665554
No 467
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.38 E-value=19 Score=45.62 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=20.2
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEE
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKV 77 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~v 77 (1208)
.|..|.+||+|.+|+..|..|.+.+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE
Confidence 4888999999999999988665444
No 468
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=90.82 E-value=2.2 Score=45.50 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=54.3
Q ss_pred HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHH
Q 000961 641 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKL 707 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl 707 (1208)
...+..||+..|...+++. ++.+.|.-||-...+.|+++.|...|.+.-++ ..+...|...|+.+..
T Consensus 108 k~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 108 KNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred HHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHH
Confidence 3467789999999888763 45678888999999999999999999887544 2344445555555555
Q ss_pred HHHHHHHHHc
Q 000961 708 SKMLKIAEVK 717 (1208)
Q Consensus 708 ~k~~~~~~~~ 717 (1208)
+++...+...
T Consensus 188 ~~lll~a~l~ 197 (257)
T COG5010 188 ETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHhC
Confidence 5554444333
No 469
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.40 E-value=1.3 Score=39.26 Aligned_cols=75 Identities=21% Similarity=0.156 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHH----hC---ChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 000961 646 SGNIQIAVASAKE----ID---EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKN 718 (1208)
Q Consensus 646 ~g~~~~A~~~a~~----~~---~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~ 718 (1208)
.|+++.|+....+ .+ +...|-.||....+.|+++.|..++++ ...+.-. + +..-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~-------~~~~---------- 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-P-------DIHY---------- 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-H-------HHHH----------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-H-------HHHH----------
Confidence 4667777776543 22 456888899999999999999999987 2111100 0 1000
Q ss_pred CchhhHHHHHhcCCHHHHHHHHHH
Q 000961 719 DVMGQFHNALYLGDVKERVKILES 742 (1208)
Q Consensus 719 ~~~~~~~~al~lgd~~~A~~i~~~ 742 (1208)
..+.++..+|++++|++.|.+
T Consensus 63 ---l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 ---LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp ---HHHHHHHHTT-HHHHHHHHHH
T ss_pred ---HHHHHHHHhCCHHHHHHHHhc
Confidence 114688889999999999875
No 470
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=90.16 E-value=0.31 Score=54.63 Aligned_cols=127 Identities=24% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHhcCCHHHHHHHHH----H---hCChhHHHHHHHHHHHcCChhHHHHHHHhh--------cCcchhHHHHHhcCCHHH
Q 000961 642 LALESGNIQIAVASAK----E---IDEKDHWYRLGVEALRQGNAGIVEYAYQRT--------KNFERLSFLYLITGNMDK 706 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~----~---~~~~~~w~~La~~al~~g~~~~Ae~~y~~~--------~d~~~l~~l~~~~g~~~k 706 (1208)
+....|+++.|++..+ . .+++..|..+|..|...++++.|+.+|.++ .++..+..+ +..++.++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 4455677777777663 2 356789999999999999999999999885 355566666 67888888
Q ss_pred HHHHHHHHHHcCC----chhhHHHHHhcCCHHHHHHHHHHcCCCh----------HHHHHHHhcCChHHHHHHHHHc
Q 000961 707 LSKMLKIAEVKND----VMGQFHNALYLGDVKERVKILESAGHLP----------LAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 707 l~k~~~~~~~~~~----~~~~~~~al~lgd~~~A~~i~~~~g~~~----------~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
..++++.+-.+.. .....+.+...|++++++.++.+..... ..-.++...|..+.|.+..++.
T Consensus 96 A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 96 ALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8877765533222 1234455667799999998877722111 1114456789999999988873
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.01 E-value=11 Score=39.34 Aligned_cols=103 Identities=15% Similarity=0.234 Sum_probs=64.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC------cEEEE---eCC--CCeeEE-
Q 000961 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK------SIRVW---DVT--KRTGVQ- 284 (1208)
Q Consensus 217 ~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg------~I~vw---d~~--~~~~~~- 284 (1208)
..|+.+...+.|.+|++..........+..- +.|..+.++..|++|++--++. .+|+| ... ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4455556778899999985554445555543 7899999999999999864322 46665 211 111111
Q ss_pred Eeec---------------------CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCC
Q 000961 285 TFRR---------------------EHDRFWILASHPEMNLLAAGHDSGMIVFKLER 320 (1208)
Q Consensus 285 ~~~~---------------------~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~ 320 (1208)
.+-+ -.....+++..|-..-|++|+++.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 0101 12345677777766667778888888876643
No 472
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.98 E-value=12 Score=43.86 Aligned_cols=149 Identities=14% Similarity=0.029 Sum_probs=77.4
Q ss_pred CCEEEEEEcCCCCEEEEEE-----------CCC-cEEEEECCC--Ce--EEEEEecCCCCEEEEEEeeCCCEEEEEECCC
Q 000961 94 DYIRTVQFHHEYPWIVSAS-----------DDQ-TIRIWNWQS--RT--CISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 94 ~~I~~v~fs~d~~~l~s~s-----------~Dg-~I~iwd~~s--~~--~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
.....|+|.++|..+++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567788988888665542 123 677775432 32 223333334456889999888 44444444
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec----cCCCeEEEEEcCCCCEEEEEeCC--------
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG----HDRGVNWAAFHPTLPLIVSGADD-------- 225 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~g~~L~sgs~d-------- 225 (1208)
..++.|......... ....+...+.. +....+.++|.|+|.+.++-+..
T Consensus 92 i~~~~d~~gdg~ad~-------------------~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 92 ILFLRDKDGDDKADG-------------------EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred EEEEeCCCCCCCCCC-------------------ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 333445433211100 00001111111 23457789999999876654421
Q ss_pred -----------CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEE
Q 000961 226 -----------RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266 (1208)
Q Consensus 226 -----------g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sg 266 (1208)
|.|..++..+++. ..+.....+...++|+|+|+++++-
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~---e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKL---RVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred CCccCcccccCceEEEEecCCCeE---EEEecCcCCCccceECCCCCEEEEc
Confidence 3445555554442 2222223445678888888876653
No 473
>PHA02790 Kelch-like protein; Provisional
Probab=89.84 E-value=12 Score=45.55 Aligned_cols=184 Identities=10% Similarity=0.032 Sum_probs=85.6
Q ss_pred cCCCEEEEEECCC-----eEEEEECCCCeEEEE--EccCCCCEEEEEEcCCCCEEEEEECC--CcEEEEECCCCeEEE--
Q 000961 61 KSQPLFVSGGDDY-----KIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYPWIVSASDD--QTIRIWNWQSRTCIS-- 129 (1208)
Q Consensus 61 p~~~~Lasgs~Dg-----~I~vWd~~~~~~~~~--l~~h~~~I~~v~fs~d~~~l~s~s~D--g~I~iwd~~s~~~i~-- 129 (1208)
.++.++++||.++ .+..||..+++.... +.........+ .-++...+.|+.+ .++..||..+++-..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 3455677777542 566788777654332 21111112222 2356666666653 457788876553322
Q ss_pred EEecCCCCEEEEEEeeCCCEEEEEECCC---eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCC
Q 000961 130 VLTGHNHYVMCASFHPKEDLVVSASLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (1208)
Q Consensus 130 ~l~~h~~~V~~l~~~p~~~~l~s~s~Dg---~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 206 (1208)
.+....... +++ .-+|...+.|+.++ .+..||..+.+-....+. ......
T Consensus 348 ~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m-------------------------~~~r~~ 400 (480)
T PHA02790 348 SLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST-------------------------YYPHYK 400 (480)
T ss_pred CCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-------------------------CCcccc
Confidence 221111111 122 22566666666543 356677665433221110 000011
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCC
Q 000961 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKR 280 (1208)
Q Consensus 207 V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d-----g~I~vwd~~~~ 280 (1208)
. +++ .-++.+.+.| |.+.+||..+++...+..+.........+.+ +++..+.||.+ .++..||..+.
T Consensus 401 ~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 401 S-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred c-eEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 1 111 2345555665 3577899877654323333222222222222 56777777754 23555555443
No 474
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=89.81 E-value=2 Score=42.68 Aligned_cols=80 Identities=9% Similarity=-0.066 Sum_probs=54.7
Q ss_pred HHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHc
Q 000961 643 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVK 717 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~ 717 (1208)
+...|+++.|...++. -++...|..+|..+...|+++.|+.+|.+.-.. ..++.+..-.+
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~~~~a~~~l------- 98 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DASHPEPVYQT------- 98 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCcHHHHHH-------
Confidence 4557788888777654 245788999999999999999999999886432 12222222222
Q ss_pred CCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 718 NDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 718 ~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|+..|.++
T Consensus 99 ------g~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 99 ------GVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred ------HHHHHHcCCHHHHHHHHHHH
Confidence 23566678888888887654
No 475
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.73 E-value=35 Score=37.30 Aligned_cols=193 Identities=10% Similarity=-0.018 Sum_probs=110.3
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE---EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC---e
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL---FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR---T 126 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~---~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~---~ 126 (1208)
-+..+.++.+ +...+..+.-++|.|+.+.... ..+. -.+.-.++..+ |++...+..|.-+.+.|+.+. +
T Consensus 88 l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 88 LFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhheeEeccc--EEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCce
Confidence 3455556544 5666667777999999865432 2222 22444555554 678888886777778887643 3
Q ss_pred EEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCC
Q 000961 127 CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (1208)
Q Consensus 127 ~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 206 (1208)
...........-..++.+ |++-..+..|+-+.+-|++....... .........
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl-------------------------i~~~n~g~g 215 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL-------------------------IGSYNTGPG 215 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE-------------------------EEEEecCCc
Confidence 334444344444556665 77888888999999999987443211 011112236
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 207 V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
+.++..+++.-+++... . -+.+-|.++.+...+.-.....+++.--.+.-.+++......+.-+.+-|..+
T Consensus 216 ~~sv~vsdnr~y~vvy~-e-gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 216 TYSVSVSDNRAYLVVYD-E-GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred eEEEEecCCeeEEEEcc-c-ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 78888888766655543 3 36677777766322333333333322212222355666665565566666554
No 476
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=89.71 E-value=1.8 Score=45.57 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------hhHH-HHHhcCC--HHHHHHHHHHHHHcCCc-----hhh
Q 000961 660 DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSF-LYLITGN--MDKLSKMLKIAEVKNDV-----MGQ 723 (1208)
Q Consensus 660 ~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~--------~l~~-l~~~~g~--~~kl~k~~~~~~~~~~~-----~~~ 723 (1208)
++.+.|..||..++..|+++.|..+|.+.-..+ .+.. +|...|+ .++..++.+.+...+-. +..
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 568999999999999999999999999875432 1222 3455566 35655555554443322 222
Q ss_pred HHHHHhcCCHHHHHHHHHHc
Q 000961 724 FHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 724 ~~~al~lgd~~~A~~i~~~~ 743 (1208)
+..+..+|++++|+..|.+.
T Consensus 151 A~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33456678888888888775
No 477
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.62 E-value=39 Score=38.99 Aligned_cols=139 Identities=12% Similarity=0.153 Sum_probs=88.2
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEECCCC---eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE---
Q 000961 13 KGLSFHSKRPWILASLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL--- 86 (1208)
Q Consensus 13 ~~lafspdg~~Lasg~~dg~I~iWd~~~g---~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~--- 86 (1208)
+.+-|....+.|++. .+|.+.=|-++.. ..+..-....|+|.++.||+|.+.+|+--.|.+|.+.+....+..
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 344455444444444 4455555654321 222222346789999999999999999999999999998432222
Q ss_pred -EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCEEEEEEeeCCCEEEEEE
Q 000961 87 -FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 87 -~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s 154 (1208)
.+-+..+..|...+|+.+ .-++..+..| +-+|-... .+.++..+.|+-.|....|.++.+.++.++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 122334456889999877 4466655444 55665432 234455567888899999999887655554
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.57 E-value=62 Score=40.03 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCCEEEEEecC-CceeeeecCCc-------ceEEEEEeCCccEEEEeCCeEEEEEcCCCeEEEEEe
Q 000961 423 RNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI-------AADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQ 489 (1208)
Q Consensus 423 d~~~l~~~~~dg~I~Iwdl~-~~~~~~l~~~~-------~v~~i~~s~dg~~Las~dg~v~lwdl~~~~~l~~~~ 489 (1208)
+|++... .+++|.+|++. -...+++..+. .+.++..-...++|++.++.|++.|+.-...+.++.
T Consensus 242 ~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 242 FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 6666665 36889999987 45556666552 233333333467778888888888887666665555
No 479
>PHA02790 Kelch-like protein; Provisional
Probab=88.74 E-value=16 Score=44.35 Aligned_cols=140 Identities=12% Similarity=-0.040 Sum_probs=67.8
Q ss_pred CCCEEEEEecCC-----eEEEEECCCCeEEEEe--cccccCEEEEEEEcCCCEEEEEECC--CeEEEEECCCCeEEE--E
Q 000961 20 KRPWILASLHSG-----VIQLWDYRMGTLIDRF--DEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWNYKMHRCLF--T 88 (1208)
Q Consensus 20 dg~~Lasg~~dg-----~I~iWd~~~g~~i~~l--~~h~~~V~~l~fsp~~~~Lasgs~D--g~I~vWd~~~~~~~~--~ 88 (1208)
++...++||.++ .+..||..+++....- .........+ .-++.+.+.||.+ .++..||..+++... .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345556776542 5667887776543322 1111111122 3467777888754 457788876554332 2
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEE--EecCCCCEEEEEEeeCCCEEEEEECCCeEEEEE
Q 000961 89 LLGHLDYIRTVQFHHEYPWIVSASDD---QTIRIWNWQSRTCISV--LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~~l~s~s~D---g~I~iwd~~s~~~i~~--l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwd 163 (1208)
+....... ....-++...+.|+.+ ..+..||..+.+-... +...... .+++ .-++...+.| |.+.+||
T Consensus 349 l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 349 LLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEEC---CceEEec
Confidence 21111111 1122356666666654 3467888776543221 1111111 1222 2244444444 4567788
Q ss_pred CCCCc
Q 000961 164 IGALR 168 (1208)
Q Consensus 164 l~~~~ 168 (1208)
..+.+
T Consensus 422 p~~~~ 426 (480)
T PHA02790 422 ESSNT 426 (480)
T ss_pred CCCCc
Confidence 76544
No 480
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=88.39 E-value=4.7 Score=53.01 Aligned_cols=125 Identities=11% Similarity=0.059 Sum_probs=73.6
Q ss_pred HHHhCCChhhhhcccc-----Cc---chhhHHHHhc---CCHHHHHHHHHH----hCChhHHHHHHHHHHHcCChhHHHH
Q 000961 619 YLQQKGFPEVALHFVK-----DE---RTRFNLALES---GNIQIAVASAKE----IDEKDHWYRLGVEALRQGNAGIVEY 683 (1208)
Q Consensus 619 yl~~~g~~e~Al~~~~-----~~---~~~f~lal~~---g~~~~A~~~a~~----~~~~~~w~~La~~al~~g~~~~Ae~ 683 (1208)
.+.+.|..+.|...+. +| ...+.++... |+++.|+...++ .+++..|..+|..+.+.|+++.|+.
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455666666666543 12 1223444455 888887776543 2246777788888888888888888
Q ss_pred HHHhhcCc--------chhHHHHHhcCCHHHHHHHHHHHHHcC-Cc----hhhHHHHHhcCCHHHHHHHHHHc
Q 000961 684 AYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKN-DV----MGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 684 ~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~~~~~~-~~----~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
+|.+.-.. ..+..++...|+.++...+.+.+.... +. .....++..+|++++|+..|.++
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88765332 233445566777777665555443322 11 12223455667777777777766
No 481
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.37 E-value=7.2 Score=48.34 Aligned_cols=124 Identities=12% Similarity=0.152 Sum_probs=74.8
Q ss_pred CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEc--CCCCEEEEEe
Q 000961 146 KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH--PTLPLIVSGA 223 (1208)
Q Consensus 146 ~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~g~~L~sgs 223 (1208)
....|+.+..||.|.+|.+...-........ ..............+.+ .-...++.++++ ...++||+++
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~-------~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSs 184 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSE-------DNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSS 184 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhcc-------ccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEec
Confidence 3468899999999999987542211000000 00000000000011122 234478999999 8888999999
Q ss_pred CCCcEEEEECCCCc-eeEEEeecCcCCCeEEEEEccCC---C---EEEEEeCCCcEEEEeC
Q 000961 224 DDRQVKLWRMNETK-AWEVDTLRGHMNNVSCVMFHAKQ---D---IIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 224 ~dg~I~iwd~~~~~-~~~~~~l~~h~~~V~~l~~sp~g---~---~l~sgs~dg~I~vwd~ 277 (1208)
....|.||-..... ......-..|..+|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 185 Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 185 NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888665421 11111122477889999998743 2 7888999999999887
No 482
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.28 E-value=5.5 Score=46.06 Aligned_cols=156 Identities=15% Similarity=0.211 Sum_probs=100.3
Q ss_pred cCCCCEEEEEEeC-CCCEEEE-EecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC-------EEEEEECCCeEEE
Q 000961 7 TKSNRVKGLSFHS-KRPWILA-SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-------LFVSGGDDYKIKV 77 (1208)
Q Consensus 7 ~h~~~V~~lafsp-dg~~Las-g~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-------~Lasgs~Dg~I~v 77 (1208)
|++-.+..+-.|. |..+|.. |+....++-.|++-|+.+..+.-|+.. -+.|.|+.+ .-++|-.+..|.-
T Consensus 464 GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr 541 (776)
T COG5167 464 GKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR 541 (776)
T ss_pred CCcCChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE
Confidence 3443444444444 4444443 444567888899999999999888775 577877543 1234444555555
Q ss_pred EECC-CCeEEEEEccCCCCEEEEEEcC----CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEE
Q 000961 78 WNYK-MHRCLFTLLGHLDYIRTVQFHH----EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 78 Wd~~-~~~~~~~l~~h~~~I~~v~fs~----d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s 152 (1208)
.|.+ .|..+... ...++++.-.||. .+.+++.+|..|.|++||--.-+....+.+....|..+..+.+|+++++
T Consensus 542 IDPR~~gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 542 IDPRARGNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred ecccccCCceeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence 5554 23222222 2334444444443 3448999999999999996554445556777788999999999998877
Q ss_pred EECCCeEEEEECCC
Q 000961 153 ASLDQTVRVWDIGA 166 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~ 166 (1208)
.+ ...+.+-|+..
T Consensus 621 TC-k~yllL~d~~i 633 (776)
T COG5167 621 TC-KNYLLLTDVPI 633 (776)
T ss_pred ee-cceEEEEeccc
Confidence 66 46777878754
No 483
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.84 E-value=0.91 Score=36.12 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=26.1
Q ss_pred HHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 000961 1095 CFKNKNLATAGNFARRLLETNPTIESQSKTARQVL 1129 (1208)
Q Consensus 1095 ~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~ 1129 (1208)
.||.|||..|..++.+||++.|. ...+.+-++++
T Consensus 11 ~ykl~~Y~~A~~~~~~lL~~eP~-N~Qa~~L~~~i 44 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALLEIEPD-NRQAQSLKELI 44 (53)
T ss_dssp HHHTT-HHHHHHHHHHHHHHTTS--HHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhhCCC-cHHHHHHHHHH
Confidence 59999999999999999999998 55555555444
No 484
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.75 E-value=3.7 Score=42.32 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCC----hhHHHHHHHHHHHcCChhHHHHHHHhhcCcc-----------hhHHHHHhcCCHHHHHHHHHH
Q 000961 649 IQIAVASAKEIDE----KDHWYRLGVEALRQGNAGIVEYAYQRTKNFE-----------RLSFLYLITGNMDKLSKMLKI 713 (1208)
Q Consensus 649 ~~~A~~~a~~~~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~-----------~l~~l~~~~g~~~kl~k~~~~ 713 (1208)
++.-++.+++.-. ...|..+|+...+-|+++.|.++|.++.++- .+.++.+..||+..+.+-...
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4444554443222 3567889999999999999999999988873 344566777888776644333
Q ss_pred H----HHcCCchhh-------HHHHHhcCCHHHHHHHHHHcC
Q 000961 714 A----EVKNDVMGQ-------FHNALYLGDVKERVKILESAG 744 (1208)
Q Consensus 714 ~----~~~~~~~~~-------~~~al~lgd~~~A~~i~~~~g 744 (1208)
+ +..+|.... ....+..++|.+|.+.|+++.
T Consensus 99 a~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 99 AESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 2 222222111 122445677888888877775
No 485
>PRK12370 invasion protein regulator; Provisional
Probab=87.61 E-value=7.3 Score=48.34 Aligned_cols=127 Identities=9% Similarity=0.000 Sum_probs=83.0
Q ss_pred HHHhcCCHHHHHHHHHH---h--CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcc--------hhHHHHHhcCCHHHHH
Q 000961 642 LALESGNIQIAVASAKE---I--DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--------RLSFLYLITGNMDKLS 708 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~---~--~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~--------~l~~l~~~~g~~~kl~ 708 (1208)
+....|++++|....++ + +++..|..+|.....+|+++.|...|.++-..+ .+..++...|+.++..
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHH
Confidence 34568999999888764 2 346789999999999999999999999863221 1223466689988877
Q ss_pred HHHHHHHHcC---Cch---hhHHHHHhcCCHHHHHHHHHHcCCCh-H----HHHHH-HhcCChHHHHHHHHH
Q 000961 709 KMLKIAEVKN---DVM---GQFHNALYLGDVKERVKILESAGHLP-L----AYITA-SVHGLQDVAERLAAE 768 (1208)
Q Consensus 709 k~~~~~~~~~---~~~---~~~~~al~lgd~~~A~~i~~~~g~~~-~----A~~~a-~~~g~~~~a~~l~~~ 768 (1208)
...+.+.... +.. ....++..+|++++|+..+.+.-.-+ . ...++ ...+..+.|...++.
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ 498 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIRE 498 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6665554332 221 23344567899999999998754321 1 12222 224555677765555
No 486
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=29 Score=40.70 Aligned_cols=98 Identities=11% Similarity=0.013 Sum_probs=58.4
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEec
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG 133 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~ 133 (1208)
|..+..++.|..++-.|.+|.+.++=.+....-..+......|.|=.|.-+. .|++.+
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss--------------------- 163 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS--------------------- 163 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC---------------------
Confidence 6677778899999988888876665433222222333223334433333222 122211
Q ss_pred CCCCEEEEEEeeCC---CEEEEEECCCeEEEEECCCCcccccc
Q 000961 134 HNHYVMCASFHPKE---DLVVSASLDQTVRVWDIGALRKKTVS 173 (1208)
Q Consensus 134 h~~~V~~l~~~p~~---~~l~s~s~Dg~V~vwdl~~~~~~~~~ 173 (1208)
..-.+..++|||+. ..++.-+.|.+||+||++..+.....
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 11235567898875 67888888999999999887655433
No 487
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.59 E-value=33 Score=45.26 Aligned_cols=108 Identities=11% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccc-cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHD-GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~-~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1208)
.....++|+|....+|.+...|.|+++-...-+.......-. ..+..+.|-.......+...+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 456788999999999999999999999854333322221111 122223332222233334445556666554322222
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000961 89 LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1208)
+...+++..--+--.+ +.+ ..+.+++||+.
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~ 144 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVL 144 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeec
Confidence 1122222221111124 444 77888888864
No 488
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.53 E-value=46 Score=36.03 Aligned_cols=236 Identities=9% Similarity=-0.012 Sum_probs=137.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 000961 206 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT 285 (1208)
Q Consensus 206 ~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~ 285 (1208)
.-..++-.|||..-.++...|.|--.|..+++. ...-.+.......|...|||..-++-+.. -|.-.|-++.+. .+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev--~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV--ETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TR 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce--EEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EE
Confidence 345577788888888888888888888888875 33333445566778888988877665544 455556544432 22
Q ss_pred ee----cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCC
Q 000961 286 FR----REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGS 361 (1208)
Q Consensus 286 ~~----~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 361 (1208)
|. ..........|.+.|++..++..+-.= .++ | ..+.+++|+...|
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG--rLd---P------------a~~~i~vfpaPqG------------- 188 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYG--RLD---P------------ARNVISVFPAPQG------------- 188 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccce--ecC---c------------ccCceeeeccCCC-------------
Confidence 22 334557788899999888887632100 000 0 3455666665432
Q ss_pred CCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEec
Q 000961 362 TSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNL 441 (1208)
Q Consensus 362 ~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl 441 (1208)
. ....++.+|||........ . ..+-..+-.... .+.+...+......+.+--++.++.-++....+.+.-+|-
T Consensus 189 -~---gpyGi~atpdGsvwyasla-g-naiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdP 261 (353)
T COG4257 189 -G---GPYGICATPDGSVWYASLA-G-NAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDP 261 (353)
T ss_pred -C---CCcceEECCCCcEEEEecc-c-cceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCc
Confidence 1 5677899999985433211 2 233322222211 1111112221112223334467788777777788888888
Q ss_pred CCceeeeecCCc---ceEEEEEeCCccEEEEe--CCeEEEEEcCCC
Q 000961 442 KNEVVKKSILPI---AADAIFYAGTGNLLCRA--EDRVVIFDLQQR 482 (1208)
Q Consensus 442 ~~~~~~~l~~~~---~v~~i~~s~dg~~Las~--dg~v~lwdl~~~ 482 (1208)
....-...+.+. .-.++.....|++-.+. .+.|.-||.++-
T Consensus 262 s~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 262 SVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred ccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 866566666555 66777777777766652 466666666543
No 489
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.34 E-value=16 Score=45.43 Aligned_cols=142 Identities=16% Similarity=0.224 Sum_probs=91.2
Q ss_pred CCEEEEEecCCeEEEEECCCCeEE------EEec----------------ccccCEEEEEEEc--CCCEEEEEECCCeEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLI------DRFD----------------EHDGPVRGVHFHK--SQPLFVSGGDDYKIK 76 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i------~~l~----------------~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~ 76 (1208)
+++++++. .+.|.||+...-... ..+. .....|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777764 788999997532221 1110 0112244444433 445899999999999
Q ss_pred EEECCC-------C-------------eEEEEEccCCCCEEEEEEc--CCCCEEEEEECCCcEEEEECCC--Ce-EEEEE
Q 000961 77 VWNYKM-------H-------------RCLFTLLGHLDYIRTVQFH--HEYPWIVSASDDQTIRIWNWQS--RT-CISVL 131 (1208)
Q Consensus 77 vWd~~~-------~-------------~~~~~l~~h~~~I~~v~fs--~d~~~l~s~s~Dg~I~iwd~~s--~~-~i~~l 131 (1208)
+|..++ . ++...+. -...++.++++ ...++||+++....|.||-... .+ ....-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996521 0 0122222 34478999999 7788888888888888875432 11 11111
Q ss_pred ecCCCCEEEEEEeeCC---C---EEEEEECCCeEEEEEC
Q 000961 132 TGHNHYVMCASFHPKE---D---LVVSASLDQTVRVWDI 164 (1208)
Q Consensus 132 ~~h~~~V~~l~~~p~~---~---~l~s~s~Dg~V~vwdl 164 (1208)
..|.+.|.+++|.++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1367789999998754 2 7888999999999888
No 490
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=87.00 E-value=5.7 Score=54.15 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=92.2
Q ss_pred HHHHHHhCCChhhhhcccc----Ccchhh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHH
Q 000961 616 MIAYLQQKGFPEVALHFVK----DERTRF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEY 683 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~----~~~~~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~ 683 (1208)
.+..+...|..+.|+.++. ++...+ .++.+.|+++.|++..++. +++..|..||......|+++.|+.
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455677888888887765 222333 4567789999999987642 457899999999999999999999
Q ss_pred HHHhhcCc--------chhHHHHHhcCCHHHHHHHHHHHHHcC--Cch---------hhHHHHHhcCCHHHHHHHHHHc
Q 000961 684 AYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKN--DVM---------GQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 684 ~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~~~~~~--~~~---------~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
+|.++-.. ..+..+|...|+.++..++.+.+.... +.. ..+.++...|+.++|++.|.++
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99986432 235667788999999887777655432 111 1134456678888888888776
No 491
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.98 E-value=58 Score=43.95 Aligned_cols=151 Identities=13% Similarity=0.152 Sum_probs=84.7
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1208)
.|-..++.|.-+++|.++= -+++.++.||..+++..-.-...+.+++.+.-.-||++.+ =+++ . |-|+..+...
T Consensus 360 aH~A~LTgv~~~~~ge~lR--lHd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~-~--l~nLSs~~~~ 433 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLR--LHDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDD-T--LVNLSSGQMS 433 (1774)
T ss_pred HHHHHhhccccCCCCCeEE--eecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCC-c--eeecCCCCcc
Confidence 3555677777777777653 3678888888655432210112233344444434444333 1111 1 2233322211
Q ss_pred EEEccCCCCEEEEEEcCCCCE-EEEEECCCcEEEEECCCC------eE--EEEEecCCCCEEEEEEeeCCCEEEEEECCC
Q 000961 87 FTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNWQSR------TC--ISVLTGHNHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 87 ~~l~~h~~~I~~v~fs~d~~~-l~s~s~Dg~I~iwd~~s~------~~--i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
. .....|.+...++++.. ++++.+..++.+|++... ++ .-.+.+......++.++++ .|+++..+|
T Consensus 434 ~---~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADseG 508 (1774)
T PF11725_consen 434 E---AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADSEG 508 (1774)
T ss_pred h---hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeCCC
Confidence 1 11235677788899986 667777778899998743 11 1122233335667777654 688899999
Q ss_pred eEEEEECCCCc
Q 000961 158 TVRVWDIGALR 168 (1208)
Q Consensus 158 ~V~vwdl~~~~ 168 (1208)
.++.=++....
T Consensus 509 kLYsa~l~~~~ 519 (1774)
T PF11725_consen 509 KLYSADLPAAQ 519 (1774)
T ss_pred CEEeccccccc
Confidence 99888876543
No 492
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.81 E-value=2.6 Score=47.82 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=108.9
Q ss_pred EEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCe
Q 000961 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1208)
Q Consensus 128 i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 207 (1208)
+..+......|..+-..|+|+.+..-+. .++.++++.+...... .+.....+.. ...|
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--------------kl~~dspg~~-------~~~V 270 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--------------KLVDDSPGDS-------RHQV 270 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--------------hhhhcCCCch-------HHHH
Confidence 3345555567888889999998887775 7788888865322110 0000000000 0001
Q ss_pred E-EEEEcCCCCEEEEEeCCCcEEEE-ECCCCceeEEEe---ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 000961 208 N-WAAFHPTLPLIVSGADDRQVKLW-RMNETKAWEVDT---LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282 (1208)
Q Consensus 208 ~-~l~~sp~g~~L~sgs~dg~I~iw-d~~~~~~~~~~~---l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~ 282 (1208)
+ .+..-..|.-+.+++.||.|.-| |.+.+....... +.-...++..+.-..+.+-+++-+.+|++.++.....+.
T Consensus 271 te~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~ 350 (733)
T COG4590 271 TEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL 350 (733)
T ss_pred HHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc
Confidence 1 11122344567778888888777 333322111111 111123333333333455678888888888887544433
Q ss_pred EEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecC--CEEEEE-eCCeEEEEEcc
Q 000961 283 VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSG--DSLFYA-KDRFLRYYEFS 346 (1208)
Q Consensus 283 ~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~--~~L~~~-~d~~i~v~d~~ 346 (1208)
+- +...-+.+..+++||.+.++.+-..+++.++.++...|.++..+ +.+.|- .+.--.+|.-.
T Consensus 351 lL-~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~PeiswsaLWqkvWYEsYpePayVWQSt 416 (733)
T COG4590 351 LL-FERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPEISWSALWQKVWYESYPEPAYVWQST 416 (733)
T ss_pred ee-hhhhhcCcceeeeCcccchheeecCCceEEEEecCCCCCccHHHhhhhhhhhcCCCchheeecc
Confidence 32 22333456788999999999999988999998888877555443 233333 34444555533
No 493
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.59 E-value=20 Score=34.56 Aligned_cols=116 Identities=10% Similarity=0.142 Sum_probs=75.4
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEECCCCe--------EEEEecccccCEEEEEEEc-----CCCEEEEEECCCeEEEEE
Q 000961 13 KGLSFHSKRPWILASLHSGVIQLWDYRMGT--------LIDRFDEHDGPVRGVHFHK-----SQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 13 ~~lafspdg~~Lasg~~dg~I~iWd~~~g~--------~i~~l~~h~~~V~~l~fsp-----~~~~Lasgs~Dg~I~vWd 79 (1208)
..-.|....+-|++++..|.|.|.+..... .+..+ .-...|++++-.+ +...|+.|+. .++..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 445677788899999999999999865332 22333 3455677776544 3446777765 5899999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcC----CCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 000961 80 YKMHRCLFTLLGHLDYIRTVQFHH----EYPWIVSASDDQTIRIWNWQSRTCISVLT 132 (1208)
Q Consensus 80 ~~~~~~~~~l~~h~~~I~~v~fs~----d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~ 132 (1208)
+....-++.-. -.+.|.++.+-. +.++ +..+.+..|.-+|.+..+...+..
T Consensus 80 V~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l-~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 80 VENNSDLFYKE-VPDGVNAIVIGKLGDIPSPL-VIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred cccCchhhhhh-CccceeEEEEEecCCCCCcE-EEECceEEEEEeCCCCcEEEEEec
Confidence 98776655433 346677776632 2334 444446778888876666555543
No 494
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=86.43 E-value=11 Score=47.95 Aligned_cols=14 Identities=7% Similarity=-0.190 Sum_probs=5.6
Q ss_pred HHcCChhHHHHHHH
Q 000961 673 LRQGNAGIVEYAYQ 686 (1208)
Q Consensus 673 l~~g~~~~Ae~~y~ 686 (1208)
...|+++.|+..|.
T Consensus 223 ~~~g~~~eA~~~~~ 236 (656)
T PRK15174 223 CAVGKYQEAIQTGE 236 (656)
T ss_pred HHCCCHHHHHHHHH
Confidence 33344444444433
No 495
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.27 E-value=2.5 Score=35.50 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcC-CHHHHHHH
Q 000961 661 EKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLG-DVKERVKI 739 (1208)
Q Consensus 661 ~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lg-d~~~A~~i 739 (1208)
++..|..+|..+...|+++.|+.+|.++=+++. .+..-...+ ..++..+| ++++|++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--------~~~~~~~~~-------------g~~~~~~~~~~~~A~~~ 60 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--------NNAEAYYNL-------------GLAYMKLGKDYEEAIED 60 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--------THHHHHHHH-------------HHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHH-------------HHHHHHhCccHHHHHHH
Confidence 467899999999999999999999988744321 111111222 24566677 67777777
Q ss_pred HHHc
Q 000961 740 LESA 743 (1208)
Q Consensus 740 ~~~~ 743 (1208)
|.++
T Consensus 61 ~~~a 64 (69)
T PF13414_consen 61 FEKA 64 (69)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 496
>PRK13614 lipoprotein LpqB; Provisional
Probab=85.99 E-value=75 Score=39.15 Aligned_cols=177 Identities=11% Similarity=0.087 Sum_probs=97.3
Q ss_pred CEEEEEEeCCCCEEEEEECCCeeeEeeC-------------CCcceEEecCCEEEEE-eCC--eEEEEEcc-CCcc--ee
Q 000961 292 RFWILASHPEMNLLAAGHDSGMIVFKLE-------------RERPAFAVSGDSLFYA-KDR--FLRYYEFS-TQKD--TQ 352 (1208)
Q Consensus 292 ~i~~la~sp~~~~la~g~~~gi~v~~l~-------------~~~~~~s~~~~~L~~~-~d~--~i~v~d~~-~~~~--~~ 352 (1208)
.+.+.+.++++..+|+..+++..+|-.. -.+|.|..++ .++++ .++ .+..+.-. ++.. ..
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~~ 422 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQAP 422 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccccc
Confidence 5678899999999888766564444221 1244555555 66666 322 44443322 1111 01
Q ss_pred --eEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCC-CEEEEEEccCCCCCC---Cccccc-ccCCceEEEEEEeCCc
Q 000961 353 --VIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG-GSYELYVIPKDSIGR---GDSVQD-AKKGLGGSAIFIARNR 425 (1208)
Q Consensus 353 --~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~-g~v~l~~l~~~~~~~---~~~~~~-~~~~~i~~~~fs~d~~ 425 (1208)
......... ..|+.+..|+||-.+++....++ ..+.+--+.....+. +..... .....+.++.|..++.
T Consensus 423 ~~~v~~~~l~g----~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~s 498 (573)
T PRK13614 423 TVTLTADWLAG----RTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDST 498 (573)
T ss_pred ceeecccccCC----CeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCE
Confidence 111111111 15999999999999888764222 237665555444443 111111 2235788999999999
Q ss_pred EEEEEc---CCCEEEEEecCCceeeeecCCcceEEEEEeCCc-cEEEEeCCe
Q 000961 426 FAVLDK---SSNQVLVKNLKNEVVKKSILPIAADAIFYAGTG-NLLCRAEDR 473 (1208)
Q Consensus 426 ~l~~~~---~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg-~~Las~dg~ 473 (1208)
+++... .+..+++..+.+...+.+..-..+..|.-..+. .+++.+|+.
T Consensus 499 l~V~~~~~~~~~~~~~v~v~~g~~~~l~~~~~~~~iaag~~~~~i~~~sd~~ 550 (573)
T PRK13614 499 VVVTKASATSNVVPELLSVDAGQPQQLAPWTGLTSITVGNGPEEVYGQSDGG 550 (573)
T ss_pred EEEEeccCCCcceEEEEEeCCCCcccCCCcCCeEEEeecCCccceEEEcCCC
Confidence 888864 234567777743322333322256666666432 355555655
No 497
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.80 E-value=2.8 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=26.3
Q ss_pred CCEEEEEEeCCC---CEEEEEecCCeEEEEECCC
Q 000961 10 NRVKGLSFHSKR---PWILASLHSGVIQLWDYRM 40 (1208)
Q Consensus 10 ~~V~~lafspdg---~~Lasg~~dg~I~iWd~~~ 40 (1208)
+.|.++.|||.. .+|+.+-+.|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 5888888889999999985
No 498
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.77 E-value=1.7 Score=36.10 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=38.6
Q ss_pred HHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 642 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
..++.|+++.|.+..+++ +++..|..||.....+|+++.|...|++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456778899888887753 24789999999999999999999999876
No 499
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.55 E-value=0.91 Score=55.55 Aligned_cols=118 Identities=17% Similarity=0.283 Sum_probs=75.0
Q ss_pred CCEEEEEEeC---CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEE-----------EEcCCCEEEEEECCCeE
Q 000961 10 NRVKGLSFHS---KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVH-----------FHKSQPLFVSGGDDYKI 75 (1208)
Q Consensus 10 ~~V~~lafsp---dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~-----------fsp~~~~Lasgs~Dg~I 75 (1208)
+.+.-|.|.| ..-++..+..++.|++.++.+... ..+.+|...++.++ .||||..|++++.||.+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3344555555 566777777888888877644322 44556777666554 48999999999999999
Q ss_pred EEEECC-----CCeEEEEEccCCC-CEEEEEEcCCC-------C--EEEEEEC-CCcEEEEECCCCeEE
Q 000961 76 KVWNYK-----MHRCLFTLLGHLD-YIRTVQFHHEY-------P--WIVSASD-DQTIRIWNWQSRTCI 128 (1208)
Q Consensus 76 ~vWd~~-----~~~~~~~l~~h~~-~I~~v~fs~d~-------~--~l~s~s~-Dg~I~iwd~~s~~~i 128 (1208)
+.|.+. ..+|+...+.|.+ +-.|.-|+... . +++++++ ...+++|.....+|.
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 888754 3456667777773 32222233221 1 2334333 457889987777665
No 500
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.39 E-value=60 Score=35.23 Aligned_cols=232 Identities=11% Similarity=0.030 Sum_probs=137.6
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE-EEE
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL-FTL 89 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~-~~l 89 (1208)
.-..++-.|||..-.++...|.|--.|..+|+....--+....-..|...|||..-++-+.. -|.-.|-++.... +.+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34566777888777777667777777888887766554555555677778888766654443 4555555444322 122
Q ss_pred --ccCCCCEEEEEEcCCCCEEEEEECC---------CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 90 --LGHLDYIRTVQFHHEYPWIVSASDD---------QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 90 --~~h~~~I~~v~fs~d~~~l~s~s~D---------g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
..-........|.+.|..-+++... +.|++|+.. .......++-.|+|..-++.-.+..
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccccc
Confidence 2233467788899999877777531 233444332 1233456777888876666556666
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|-..|.......... .-.........+--+|.|..-++....+.+..+|.....
T Consensus 212 iaridp~~~~aev~p-------------------------~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s- 265 (353)
T COG4257 212 IARIDPFAGHAEVVP-------------------------QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS- 265 (353)
T ss_pred eEEcccccCCcceec-------------------------CCCcccccccccccCccCcEEEeccCCceeeEeCccccc-
Confidence 666665443211110 011112233345556777777777778888888887765
Q ss_pred eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 239 ~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
|....+.+....-.++.....+..-.+--..|.|.-+|..+
T Consensus 266 W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 266 WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 55666777666667777666665444444445555555443
Done!