Query 000961
Match_columns 1208
No_of_seqs 1124 out of 3606
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 03:35:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkr_B Coatomer subunit alpha; 100.0 2E-110 8E-115 897.0 31.8 316 890-1208 1-320 (320)
2 3mv2_A Coatomer subunit alpha; 100.0 7E-107 3E-111 867.4 29.4 304 896-1203 19-324 (325)
3 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-76 4.6E-81 771.0 82.4 704 1-760 5-779 (814)
4 2ymu_A WD-40 repeat protein; u 100.0 1.4E-52 5E-57 522.3 71.2 490 3-541 10-561 (577)
5 1nr0_A Actin interacting prote 100.0 1.2E-51 4.1E-56 517.2 59.6 480 2-519 52-610 (611)
6 2ymu_A WD-40 repeat protein; u 100.0 4.8E-50 1.6E-54 499.6 66.7 467 2-517 50-577 (577)
7 1nr0_A Actin interacting prote 100.0 4.1E-49 1.4E-53 494.2 62.6 466 6-520 15-567 (611)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-48 5E-53 531.1 57.9 501 3-518 609-1247(1249)
9 3mkq_A Coatomer beta'-subunit; 100.0 6.1E-47 2.1E-51 491.9 61.0 647 42-770 4-776 (814)
10 1pgu_A Actin interacting prote 100.0 2.3E-45 7.9E-50 460.5 55.2 466 6-520 15-614 (615)
11 2oaj_A Protein SNI1; WD40 repe 100.0 7.9E-43 2.7E-47 453.4 67.9 570 4-596 12-783 (902)
12 1pgu_A Actin interacting prote 100.0 1.7E-42 5.9E-47 434.4 55.0 434 2-481 56-614 (615)
13 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-42 4.9E-47 472.2 54.7 507 45-594 609-1247(1249)
14 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-41 7.2E-46 440.0 55.3 506 7-526 56-790 (902)
15 2ynn_A Coatomer subunit beta'; 100.0 4.5E-41 1.5E-45 382.7 45.0 291 2-320 6-302 (304)
16 1vyh_C Platelet-activating fac 100.0 1E-40 3.5E-45 396.6 41.3 279 3-310 102-400 (410)
17 3ow8_A WD repeat-containing pr 100.0 2E-39 6.8E-44 372.0 42.3 280 2-310 25-310 (321)
18 1got_B GT-beta; complex (GTP-b 100.0 3.8E-39 1.3E-43 373.1 44.6 280 3-310 49-332 (340)
19 2pbi_B Guanine nucleotide-bind 100.0 3.4E-38 1.1E-42 367.1 43.6 282 2-310 57-346 (354)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.4E-37 8.2E-42 358.6 42.3 298 2-350 8-338 (345)
21 4ery_A WD repeat-containing pr 100.0 4.2E-37 1.5E-41 351.0 43.5 279 3-309 17-298 (312)
22 3frx_A Guanine nucleotide-bind 100.0 4.2E-37 1.4E-41 352.4 43.1 277 2-310 10-306 (319)
23 3iz6_a 40S ribosomal protein R 100.0 3.3E-38 1.1E-42 371.1 32.6 280 3-310 60-364 (380)
24 1vyh_C Platelet-activating fac 100.0 8.9E-37 3E-41 362.7 41.3 289 44-396 101-409 (410)
25 2hes_X YDR267CP; beta-propelle 100.0 3E-36 1E-40 347.1 42.1 281 2-310 7-317 (330)
26 2ynn_A Coatomer subunit beta'; 100.0 3.4E-36 1.2E-40 342.3 42.0 296 42-398 4-302 (304)
27 1r5m_A SIR4-interacting protei 100.0 2.9E-36 1E-40 358.5 43.1 327 6-397 42-424 (425)
28 3ow8_A WD repeat-containing pr 100.0 3.9E-36 1.3E-40 344.5 42.3 293 41-397 22-320 (321)
29 2xzm_R RACK1; ribosome, transl 100.0 3.4E-36 1.2E-40 348.7 42.0 277 2-310 14-329 (343)
30 4gqb_B Methylosome protein 50; 100.0 1.1E-36 3.8E-41 352.1 37.7 274 6-309 27-319 (344)
31 1erj_A Transcriptional repress 100.0 5.2E-36 1.8E-40 354.1 44.1 283 6-310 61-378 (393)
32 4g56_B MGC81050 protein; prote 100.0 1.5E-36 5.2E-41 353.5 35.4 277 5-310 38-332 (357)
33 1got_B GT-beta; complex (GTP-b 100.0 3.2E-35 1.1E-39 340.1 45.7 290 41-395 45-340 (340)
34 3frx_A Guanine nucleotide-bind 100.0 6.6E-35 2.3E-39 334.1 44.1 298 42-398 8-317 (319)
35 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.8E-35 1.7E-39 339.2 42.3 306 41-400 5-337 (345)
36 2pm9_A Protein WEB1, protein t 100.0 4E-37 1.4E-41 365.7 23.5 361 9-443 12-414 (416)
37 1r5m_A SIR4-interacting protei 100.0 2.5E-35 8.5E-40 350.5 38.7 362 30-443 24-425 (425)
38 3iz6_a 40S ribosomal protein R 100.0 4.7E-36 1.6E-40 352.8 31.6 314 31-399 46-376 (380)
39 1gxr_A ESG1, transducin-like e 100.0 4.6E-35 1.6E-39 336.6 38.1 322 7-396 7-335 (337)
40 2pbi_B Guanine nucleotide-bind 100.0 2.6E-34 8.9E-39 334.3 43.2 290 42-395 55-354 (354)
41 2xzm_R RACK1; ribosome, transl 100.0 3.9E-34 1.3E-38 331.3 43.6 296 42-398 12-340 (343)
42 3zwl_B Eukaryotic translation 100.0 5.5E-34 1.9E-38 331.9 45.0 291 3-349 26-348 (369)
43 4ery_A WD repeat-containing pr 100.0 7.9E-34 2.7E-38 323.8 43.2 295 41-397 13-311 (312)
44 4aow_A Guanine nucleotide-bind 100.0 9.8E-34 3.3E-38 326.4 44.2 290 3-349 32-339 (340)
45 3vl1_A 26S proteasome regulato 100.0 8.5E-35 2.9E-39 346.4 36.1 341 12-398 59-419 (420)
46 2hes_X YDR267CP; beta-propelle 100.0 1.4E-33 4.9E-38 324.7 44.0 302 39-398 2-328 (330)
47 1gxr_A ESG1, transducin-like e 100.0 1.3E-33 4.3E-38 324.6 43.3 275 4-311 46-327 (337)
48 1sq9_A Antiviral protein SKI8; 100.0 1.8E-34 6E-39 340.7 35.6 288 3-348 10-396 (397)
49 3v7d_B Cell division control p 100.0 3.5E-33 1.2E-37 337.4 47.8 321 3-396 115-461 (464)
50 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-33 5.1E-38 320.5 41.4 287 2-353 11-302 (313)
51 4gqb_B Methylosome protein 50; 100.0 6.2E-34 2.1E-38 329.1 36.9 244 7-281 80-333 (344)
52 3mkq_B Coatomer subunit alpha; 100.0 1.5E-35 5.1E-40 294.0 19.4 173 629-801 1-176 (177)
53 3dm0_A Maltose-binding peripla 100.0 1.8E-33 6.2E-38 358.1 44.2 277 3-310 376-682 (694)
54 4aow_A Guanine nucleotide-bind 100.0 5.2E-33 1.8E-37 320.3 43.9 303 39-442 26-336 (340)
55 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-32 3.6E-37 331.5 48.1 325 2-399 111-443 (445)
56 4g56_B MGC81050 protein; prote 100.0 2.6E-34 8.7E-39 334.7 32.2 320 11-399 7-344 (357)
57 2j04_B YDR362CP, TAU91; beta p 100.0 3.9E-35 1.3E-39 356.6 26.3 350 8-445 132-519 (524)
58 3ei3_B DNA damage-binding prot 100.0 1.3E-33 4.5E-38 332.0 38.1 288 2-319 66-381 (383)
59 3k26_A Polycomb protein EED; W 100.0 6.5E-34 2.2E-38 331.1 34.8 305 4-310 13-355 (366)
60 2pm7_B Protein transport prote 100.0 1.6E-33 5.6E-38 319.0 34.6 255 1-278 1-284 (297)
61 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-33 7.8E-38 327.7 36.3 307 4-350 3-364 (372)
62 3i2n_A WD repeat-containing pr 100.0 1.4E-33 4.7E-38 327.3 33.9 280 3-310 12-342 (357)
63 1erj_A Transcriptional repress 100.0 3.5E-32 1.2E-36 321.2 43.1 300 32-398 41-389 (393)
64 3vl1_A 26S proteasome regulato 100.0 4.1E-33 1.4E-37 331.8 35.4 326 53-443 58-419 (420)
65 4e54_B DNA damage-binding prot 100.0 1.2E-33 4E-38 338.8 29.9 292 2-320 112-430 (435)
66 3dm0_A Maltose-binding peripla 100.0 1.9E-32 6.5E-37 348.7 42.8 311 43-442 374-692 (694)
67 3v7d_B Cell division control p 100.0 2.8E-31 9.6E-36 320.8 49.5 347 42-441 112-461 (464)
68 3gre_A Serine/threonine-protei 100.0 3.2E-33 1.1E-37 335.0 29.8 347 2-440 55-437 (437)
69 3zwl_B Eukaryotic translation 100.0 2.7E-31 9.4E-36 309.1 45.0 315 43-399 24-347 (369)
70 2pm9_A Protein WEB1, protein t 100.0 1.1E-33 3.7E-38 336.1 23.9 248 7-282 65-340 (416)
71 4a11_B DNA excision repair pro 100.0 8.5E-32 2.9E-36 318.3 39.3 344 3-397 37-404 (408)
72 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-32 1.2E-36 317.5 35.6 323 47-442 4-360 (372)
73 2j04_B YDR362CP, TAU91; beta p 100.0 3E-33 1E-37 340.1 26.4 317 17-399 169-518 (524)
74 3dw8_B Serine/threonine-protei 100.0 1.7E-32 5.9E-37 329.3 32.7 295 8-317 27-443 (447)
75 3dwl_C Actin-related protein 2 100.0 1.9E-33 6.4E-38 329.7 23.4 262 4-278 6-280 (377)
76 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-31 1.6E-35 317.2 44.5 329 42-444 109-443 (445)
77 3bg1_A Protein SEC13 homolog; 100.0 6.4E-33 2.2E-37 317.1 25.8 251 4-278 8-292 (316)
78 3gre_A Serine/threonine-protei 100.0 2.6E-32 8.8E-37 327.1 31.4 372 16-517 34-437 (437)
79 1yfq_A Cell cycle arrest prote 100.0 4.7E-32 1.6E-36 312.7 32.0 275 5-313 7-315 (342)
80 3dwl_C Actin-related protein 2 100.0 6.9E-33 2.4E-37 324.9 25.0 248 47-319 7-280 (377)
81 3jrp_A Fusion protein of prote 100.0 1.2E-31 4.1E-36 313.6 34.9 258 1-281 3-289 (379)
82 4aez_A CDC20, WD repeat-contai 100.0 1.7E-31 5.9E-36 316.2 36.6 286 7-352 89-385 (401)
83 3ei3_B DNA damage-binding prot 100.0 1.7E-31 5.8E-36 314.0 35.9 304 36-398 58-382 (383)
84 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-31 7.2E-36 306.7 34.4 260 2-286 4-344 (351)
85 4gga_A P55CDC, cell division c 100.0 8.7E-31 3E-35 312.3 40.5 283 12-350 108-398 (420)
86 1sq9_A Antiviral protein SKI8; 100.0 5E-31 1.7E-35 311.1 37.5 303 43-398 8-395 (397)
87 4ggc_A P55CDC, cell division c 100.0 2.2E-30 7.4E-35 295.3 40.9 269 12-310 28-304 (318)
88 2pm7_B Protein transport prote 100.0 4.6E-31 1.6E-35 298.9 34.8 241 45-310 3-274 (297)
89 2j04_A TAU60, YPL007P, hypothe 100.0 4.5E-33 1.5E-37 328.6 18.7 324 8-385 14-350 (588)
90 3mmy_A MRNA export factor; mRN 100.0 2.8E-31 9.7E-36 308.8 33.3 282 2-312 32-337 (368)
91 1p22_A F-BOX/WD-repeat protein 100.0 5.4E-31 1.9E-35 315.6 35.7 277 6-351 130-418 (435)
92 3odt_A Protein DOA1; ubiquitin 100.0 4.6E-30 1.6E-34 291.6 41.2 286 41-400 8-298 (313)
93 4h5i_A Guanine nucleotide-exch 100.0 2.8E-31 9.7E-36 309.9 30.6 284 9-347 14-343 (365)
94 3i2n_A WD repeat-containing pr 100.0 1.1E-30 3.9E-35 302.7 35.3 293 45-398 12-353 (357)
95 3k26_A Polycomb protein EED; W 100.0 6.5E-31 2.2E-35 305.7 31.6 291 47-397 14-365 (366)
96 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-32 9.1E-37 322.1 19.2 315 48-469 12-347 (588)
97 4e54_B DNA damage-binding prot 100.0 2.8E-31 9.6E-36 318.0 27.7 304 43-399 111-431 (435)
98 3jrp_A Fusion protein of prote 100.0 8E-30 2.7E-34 298.1 37.9 245 41-310 1-276 (379)
99 4aez_A CDC20, WD repeat-contai 100.0 3.4E-29 1.2E-33 296.5 42.9 288 49-400 89-382 (401)
100 3bg1_A Protein SEC13 homolog; 100.0 1.3E-30 4.4E-35 298.0 27.1 241 46-310 8-282 (316)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-30 5.9E-35 307.7 28.8 270 11-307 36-330 (402)
102 4a11_B DNA excision repair pro 100.0 5E-30 1.7E-34 303.1 32.5 345 72-481 22-405 (408)
103 1k32_A Tricorn protease; prote 100.0 9.7E-29 3.3E-33 328.7 47.8 452 3-520 46-637 (1045)
104 3jro_A Fusion protein of prote 100.0 1.2E-30 4.2E-35 334.1 26.4 258 1-281 1-287 (753)
105 3f3f_A Nucleoporin SEH1; struc 100.0 5.2E-29 1.8E-33 286.6 37.1 267 45-351 5-341 (351)
106 3dw8_B Serine/threonine-protei 100.0 1.4E-29 4.9E-34 303.8 32.7 298 49-396 26-444 (447)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.7E-29 1.9E-33 299.4 36.3 269 10-309 5-373 (450)
108 4gga_A P55CDC, cell division c 100.0 1.6E-28 5.3E-33 292.8 38.8 255 4-290 142-406 (420)
109 4ggc_A P55CDC, cell division c 100.0 9.7E-28 3.3E-32 273.3 39.0 280 54-442 28-314 (318)
110 1yfq_A Cell cycle arrest prote 100.0 2.3E-28 7.8E-33 281.8 32.8 284 45-385 5-312 (342)
111 1p22_A F-BOX/WD-repeat protein 100.0 9.7E-28 3.3E-32 287.3 39.2 280 48-400 130-416 (435)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-28 4.3E-33 291.7 29.5 252 3-282 75-345 (402)
113 2xyi_A Probable histone-bindin 100.0 1.8E-28 6.2E-33 293.1 31.0 251 3-279 122-410 (430)
114 3mmy_A MRNA export factor; mRN 100.0 1.8E-27 6.1E-32 276.7 37.2 287 35-385 23-335 (368)
115 4h5i_A Guanine nucleotide-exch 100.0 1.7E-28 5.7E-33 286.4 28.4 248 4-280 68-344 (365)
116 3vu4_A KMHSV2; beta-propeller 100.0 8.7E-28 3E-32 279.3 32.5 252 3-280 13-272 (355)
117 1k32_A Tricorn protease; prote 100.0 1.9E-26 6.4E-31 306.7 49.4 415 8-479 13-500 (1045)
118 1l0q_A Surface layer protein; 100.0 3.6E-26 1.2E-30 269.1 45.2 274 22-355 3-283 (391)
119 2xyi_A Probable histone-bindin 100.0 1.8E-27 6.2E-32 284.4 33.1 275 11-310 47-399 (430)
120 3bws_A Protein LP49; two-domai 100.0 1.5E-26 5E-31 276.5 40.5 337 8-398 59-432 (433)
121 3jro_A Fusion protein of prote 100.0 1.6E-28 5.4E-33 314.6 24.6 242 44-310 2-274 (753)
122 4gq1_A NUP37; propeller, trans 100.0 4.7E-28 1.6E-32 285.8 26.8 305 10-319 16-388 (393)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-26 3.5E-31 279.7 36.9 288 51-398 4-391 (450)
124 3lrv_A PRE-mRNA-splicing facto 100.0 6.9E-28 2.3E-32 278.8 25.1 259 16-312 43-324 (343)
125 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-26 4.5E-31 269.3 35.8 294 35-399 3-337 (355)
126 3bws_A Protein LP49; two-domai 100.0 1.7E-26 5.8E-31 275.9 37.3 271 5-309 119-419 (433)
127 1l0q_A Surface layer protein; 100.0 9.1E-25 3.1E-29 257.1 45.8 326 3-383 26-365 (391)
128 4gq1_A NUP37; propeller, trans 99.9 1.4E-26 4.9E-31 273.1 23.6 256 10-277 90-387 (393)
129 1nir_A Nitrite reductase; hemo 99.9 1.7E-24 5.9E-29 265.1 39.9 329 16-399 144-515 (543)
130 2w18_A PALB2, fancn, partner a 99.9 4.9E-25 1.7E-29 245.0 29.9 238 12-277 42-355 (356)
131 3lrv_A PRE-mRNA-splicing facto 99.9 1.6E-25 5.3E-30 259.0 24.7 229 58-320 43-292 (343)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.3E-24 7.8E-29 255.9 28.5 304 9-378 62-410 (415)
133 1nir_A Nitrite reductase; hemo 99.9 1.2E-22 4E-27 248.9 42.7 343 58-453 144-525 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-23 3.8E-28 270.1 34.6 326 9-396 36-457 (741)
135 2w18_A PALB2, fancn, partner a 99.9 4.4E-24 1.5E-28 237.3 23.6 195 10-233 112-355 (356)
136 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.4E-23 1.2E-27 245.8 29.4 264 4-303 112-410 (415)
137 2ecf_A Dipeptidyl peptidase IV 99.9 9.7E-23 3.3E-27 261.3 32.3 347 51-449 36-465 (741)
138 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-23 4.1E-28 268.9 22.0 354 10-431 17-428 (723)
139 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-22 6.3E-27 258.0 29.1 362 52-469 17-426 (723)
140 2z3z_A Dipeptidyl aminopeptida 99.9 6.8E-22 2.3E-26 252.0 32.3 324 11-398 27-435 (706)
141 3vgz_A Uncharacterized protein 99.9 2.3E-20 7.8E-25 215.7 38.1 275 8-311 39-334 (353)
142 3u4y_A Uncharacterized protein 99.9 1.9E-20 6.4E-25 214.7 34.5 284 15-349 3-306 (331)
143 1ri6_A Putative isomerase YBHE 99.9 2.3E-20 7.9E-25 214.4 34.6 300 22-378 5-335 (343)
144 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-20 5.1E-25 239.6 34.2 333 54-445 28-437 (706)
145 2ojh_A Uncharacterized protein 99.9 2.7E-21 9.3E-26 216.6 23.4 252 27-310 18-291 (297)
146 3u4y_A Uncharacterized protein 99.9 1.3E-19 4.3E-24 207.7 35.7 288 57-400 3-306 (331)
147 3vgz_A Uncharacterized protein 99.9 5.3E-19 1.8E-23 204.2 38.3 273 50-385 39-333 (353)
148 1pby_B Quinohemoprotein amine 99.9 1.3E-19 4.6E-24 207.5 30.3 273 22-357 2-320 (337)
149 2ojh_A Uncharacterized protein 99.9 9.6E-20 3.3E-24 203.9 28.1 264 69-386 18-292 (297)
150 1ri6_A Putative isomerase YBHE 99.8 5E-19 1.7E-23 203.2 33.7 273 6-302 34-334 (343)
151 1z68_A Fibroblast activation p 99.8 1.1E-19 3.8E-24 232.0 25.7 333 14-396 20-441 (719)
152 3o4h_A Acylamino-acid-releasin 99.8 1.8E-19 6E-24 224.1 26.5 258 9-310 21-301 (582)
153 3hfq_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 196.6 34.8 262 23-310 4-305 (347)
154 4a5s_A Dipeptidyl peptidase 4 99.8 3.2E-18 1.1E-22 218.8 36.6 379 52-489 17-457 (740)
155 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-18 3.8E-23 223.1 30.0 364 9-442 16-448 (740)
156 1z68_A Fibroblast activation p 99.8 7.6E-19 2.6E-23 224.3 26.9 333 98-489 20-451 (719)
157 3hfq_A Uncharacterized protein 99.8 1E-17 3.5E-22 193.4 33.2 252 6-283 36-323 (347)
158 1pby_B Quinohemoprotein amine 99.8 1.8E-18 6.2E-23 198.0 26.7 244 11-289 35-320 (337)
159 1jmx_B Amine dehydrogenase; ox 99.8 5.1E-18 1.7E-22 195.4 27.7 268 13-289 3-335 (349)
160 3pe7_A Oligogalacturonate lyas 99.8 5.8E-18 2E-22 198.6 28.4 278 3-310 24-370 (388)
161 3pe7_A Oligogalacturonate lyas 99.8 7.1E-18 2.4E-22 197.8 27.8 314 34-397 13-381 (388)
162 3scy_A Hypothetical bacterial 99.8 3.5E-16 1.2E-20 181.6 40.4 312 63-421 13-360 (361)
163 3scy_A Hypothetical bacterial 99.8 8.3E-17 2.9E-21 186.9 34.5 267 8-299 48-360 (361)
164 2oit_A Nucleoporin 214KDA; NH2 99.8 2.7E-18 9.3E-23 204.3 21.5 207 8-236 35-279 (434)
165 3o4h_A Acylamino-acid-releasin 99.8 8.6E-18 2.9E-22 208.8 26.0 270 50-397 20-312 (582)
166 2oiz_A Aromatic amine dehydrog 99.8 2.9E-16 9.9E-21 182.2 30.8 299 20-378 14-360 (361)
167 1jmx_B Amine dehydrogenase; ox 99.7 2.2E-16 7.5E-21 181.7 29.1 243 56-357 4-335 (349)
168 2oit_A Nucleoporin 214KDA; NH2 99.7 1.6E-16 5.5E-21 189.0 28.2 159 8-167 91-279 (434)
169 1jof_A Carboxy-CIS,CIS-muconat 99.7 8.5E-16 2.9E-20 178.8 32.2 262 23-310 4-329 (365)
170 3c5m_A Oligogalacturonate lyas 99.7 6.5E-17 2.2E-21 189.8 21.5 264 12-310 38-370 (396)
171 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.5E-16 8.7E-21 183.2 24.8 250 9-280 39-342 (365)
172 3c5m_A Oligogalacturonate lyas 99.7 2.3E-16 7.8E-21 185.2 23.5 320 33-398 12-382 (396)
173 3azo_A Aminopeptidase; POP fam 99.7 4.8E-16 1.7E-20 196.2 28.0 264 4-296 18-341 (662)
174 2oiz_A Aromatic amine dehydrog 99.7 5.3E-15 1.8E-19 171.5 29.3 275 4-303 46-360 (361)
175 1q7f_A NHL, brain tumor CG1071 99.7 1.9E-14 6.5E-19 160.9 32.3 239 7-280 27-281 (286)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.4E-14 4.8E-19 165.8 28.8 242 9-278 23-321 (329)
177 1qks_A Cytochrome CD1 nitrite 99.7 2.3E-13 8E-18 165.8 40.8 328 19-399 165-539 (567)
178 2dg1_A DRP35, lactonase; beta 99.7 1.7E-14 5.9E-19 165.2 28.7 269 9-310 5-299 (333)
179 2gop_A Trilobed protease; beta 99.6 5.2E-14 1.8E-18 162.0 30.5 249 9-310 14-319 (347)
180 3azo_A Aminopeptidase; POP fam 99.6 5.1E-15 1.7E-19 186.9 23.6 288 46-397 18-366 (662)
181 2z2n_A Virginiamycin B lyase; 99.6 1.2E-12 4.2E-17 146.6 38.9 280 5-319 10-294 (299)
182 1q7f_A NHL, brain tumor CG1071 99.6 2E-13 6.9E-18 152.5 31.6 238 49-318 27-278 (286)
183 1qks_A Cytochrome CD1 nitrite 99.6 1.3E-12 4.6E-17 159.2 40.7 329 103-490 165-547 (567)
184 2xdw_A Prolyl endopeptidase; a 99.6 2.2E-13 7.4E-18 173.2 33.7 281 19-349 81-416 (710)
185 3fvz_A Peptidyl-glycine alpha- 99.6 1.6E-13 5.6E-18 156.9 29.4 240 51-309 23-310 (329)
186 3e5z_A Putative gluconolactona 99.6 1.9E-13 6.4E-18 153.8 28.5 246 2-282 20-289 (296)
187 2xdw_A Prolyl endopeptidase; a 99.6 1.8E-13 6.1E-18 174.0 31.4 245 8-281 123-416 (710)
188 3e5z_A Putative gluconolactona 99.6 8.5E-13 2.9E-17 148.3 30.2 243 41-318 17-284 (296)
189 2gop_A Trilobed protease; beta 99.6 2.2E-13 7.4E-18 156.8 25.8 233 10-290 59-340 (347)
190 2bkl_A Prolyl endopeptidase; m 99.5 2.5E-13 8.5E-18 172.2 26.2 279 17-350 75-400 (695)
191 2dg1_A DRP35, lactonase; beta 99.5 3.5E-12 1.2E-16 145.8 33.1 244 3-270 38-301 (333)
192 3sjl_D Methylamine dehydrogena 99.5 2.9E-12 1E-16 146.4 30.8 300 14-376 37-384 (386)
193 4a2l_A BT_4663, two-component 99.5 1.8E-09 6.1E-14 138.9 59.5 503 9-554 87-655 (795)
194 1rwi_B Serine/threonine-protei 99.5 6.1E-13 2.1E-17 147.0 23.1 241 11-281 25-266 (270)
195 2qc5_A Streptogramin B lactona 99.5 3.8E-11 1.3E-15 134.4 37.8 277 7-317 17-297 (300)
196 2bkl_A Prolyl endopeptidase; m 99.5 1.8E-13 6.1E-18 173.5 20.3 244 7-282 118-400 (695)
197 3dsm_A Uncharacterized protein 99.5 6.8E-12 2.3E-16 143.3 30.3 243 29-308 15-285 (328)
198 3no2_A Uncharacterized protein 99.5 1E-11 3.4E-16 137.8 30.5 220 62-310 4-232 (276)
199 2mad_H Methylamine dehydrogena 99.5 6.5E-11 2.2E-15 137.3 38.0 283 16-353 27-356 (373)
200 3dsm_A Uncharacterized protein 99.5 7.2E-12 2.5E-16 143.1 29.5 244 10-288 44-310 (328)
201 3no2_A Uncharacterized protein 99.5 4.7E-12 1.6E-16 140.5 26.7 234 20-288 4-261 (276)
202 4a2l_A BT_4663, two-component 99.5 6.4E-09 2.2E-13 133.7 58.1 470 12-519 133-658 (795)
203 2z2n_A Virginiamycin B lyase; 99.5 2.8E-10 9.5E-15 127.3 39.4 229 48-308 11-242 (299)
204 3v9f_A Two-component system se 99.4 8.8E-08 3E-12 122.8 65.3 508 9-554 65-652 (781)
205 1yr2_A Prolyl oligopeptidase; 99.4 8.7E-12 3E-16 159.2 27.3 281 18-350 115-444 (741)
206 1rwi_B Serine/threonine-protei 99.4 1E-11 3.6E-16 137.0 24.0 227 53-309 25-252 (270)
207 1yr2_A Prolyl oligopeptidase; 99.4 5.7E-12 1.9E-16 160.9 24.8 243 8-281 161-443 (741)
208 3c75_H MADH, methylamine dehyd 99.4 1.1E-10 3.7E-15 136.0 30.1 281 19-354 82-409 (426)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.7E-10 5.9E-15 130.2 30.7 248 4-279 12-299 (314)
210 3hrp_A Uncharacterized protein 99.4 1E-10 3.5E-15 137.6 29.4 249 10-277 131-408 (409)
211 3v9f_A Two-component system se 99.4 6.5E-07 2.2E-11 114.8 67.3 507 9-554 18-607 (781)
212 2mad_H Methylamine dehydrogena 99.4 2.7E-09 9.2E-14 123.6 39.5 283 59-399 28-351 (373)
213 2qc5_A Streptogramin B lactona 99.3 4E-09 1.4E-13 117.8 38.4 229 49-309 17-248 (300)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.4E-10 1.2E-14 127.8 28.9 228 52-310 18-287 (314)
215 3sjl_D Methylamine dehydrogena 99.3 4.8E-10 1.7E-14 128.1 29.5 284 57-399 38-364 (386)
216 2qe8_A Uncharacterized protein 99.3 1.1E-10 3.8E-15 134.1 23.2 259 10-310 17-310 (343)
217 3g4e_A Regucalcin; six bladed 99.3 2.1E-09 7.2E-14 120.6 31.4 233 7-268 10-261 (297)
218 3iuj_A Prolyl endopeptidase; h 99.3 1.6E-10 5.4E-15 146.1 24.8 243 7-282 126-408 (693)
219 3g4e_A Regucalcin; six bladed 99.2 7.2E-09 2.5E-13 116.2 33.3 229 50-309 11-260 (297)
220 1xip_A Nucleoporin NUP159; bet 99.2 7.1E-11 2.4E-15 135.6 16.9 179 11-223 39-232 (388)
221 3hrp_A Uncharacterized protein 99.2 2.4E-09 8.3E-14 125.8 29.6 228 53-310 132-399 (409)
222 3dr2_A Exported gluconolactona 99.2 1.4E-09 4.8E-14 122.6 26.3 234 3-271 38-299 (305)
223 1xip_A Nucleoporin NUP159; bet 99.2 2E-10 6.8E-15 131.9 17.6 174 53-267 39-232 (388)
224 2ghs_A AGR_C_1268P; regucalcin 99.2 2.3E-08 7.9E-13 113.7 33.0 228 10-269 49-292 (326)
225 3c75_H MADH, methylamine dehyd 99.2 2E-09 6.9E-14 125.3 23.6 259 4-286 114-409 (426)
226 3dr2_A Exported gluconolactona 99.1 6.6E-09 2.3E-13 117.0 27.0 239 42-316 35-302 (305)
227 1mda_H Methylamine dehydrogena 99.1 2.2E-09 7.7E-14 122.9 23.1 275 20-356 30-355 (368)
228 3iuj_A Prolyl endopeptidase; h 99.1 1.3E-09 4.5E-14 137.6 23.1 228 49-308 126-388 (693)
229 2ghs_A AGR_C_1268P; regucalcin 99.1 4.2E-08 1.4E-12 111.6 33.3 221 54-309 51-290 (326)
230 1yiq_A Quinohemoprotein alcoho 99.1 1.9E-08 6.4E-13 126.2 29.9 328 21-385 70-537 (689)
231 4a0p_A LRP6, LRP-6, low-densit 99.1 0.00013 4.4E-09 89.9 64.7 457 21-521 6-509 (628)
232 1kb0_A Quinohemoprotein alcoho 99.1 1.8E-08 6E-13 126.2 29.2 330 21-384 77-538 (677)
233 3s94_A LRP-6, low-density lipo 99.1 1.1E-05 3.7E-10 99.4 52.4 458 21-521 9-511 (619)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.0 3E-07 1E-11 106.6 33.0 239 20-287 52-304 (376)
235 1mda_H Methylamine dehydrogena 99.0 4.6E-09 1.6E-13 120.3 16.8 265 3-300 60-366 (368)
236 1yiq_A Quinohemoprotein alcoho 99.0 5.4E-08 1.9E-12 122.1 26.9 282 21-306 121-533 (689)
237 2ece_A 462AA long hypothetical 98.9 3.7E-07 1.3E-11 104.8 29.4 252 32-309 44-399 (462)
238 1kb0_A Quinohemoprotein alcoho 98.9 6.9E-08 2.4E-12 120.8 24.1 283 20-306 127-535 (677)
239 2ece_A 462AA long hypothetical 98.9 2.4E-07 8.2E-12 106.3 26.3 241 19-267 93-399 (462)
240 1npe_A Nidogen, entactin; glyc 98.9 1.8E-06 6.1E-11 94.8 32.4 251 21-303 1-263 (267)
241 3hxj_A Pyrrolo-quinoline quino 98.9 1.6E-08 5.4E-13 114.9 16.1 301 14-398 24-324 (330)
242 3q7m_A Lipoprotein YFGL, BAMB; 98.9 4.3E-07 1.5E-11 105.3 28.5 229 20-289 102-347 (376)
243 2qe8_A Uncharacterized protein 98.9 3.2E-08 1.1E-12 113.5 18.4 237 7-275 64-317 (343)
244 3s94_A LRP-6, low-density lipo 98.9 0.00037 1.3E-08 85.7 55.7 433 10-482 40-552 (619)
245 2hz6_A Endoplasmic reticulum t 98.9 7.4E-10 2.5E-14 128.4 3.8 183 20-238 8-195 (369)
246 1bpo_A Protein (clathrin); cla 98.8 4.9E-05 1.7E-09 85.5 41.6 385 225-752 47-491 (494)
247 1fwx_A Nitrous oxide reductase 98.8 1.3E-07 4.6E-12 112.2 22.3 255 214-484 99-434 (595)
248 3hxj_A Pyrrolo-quinoline quino 98.8 4.8E-08 1.6E-12 110.8 17.8 258 10-314 60-317 (330)
249 1fwx_A Nitrous oxide reductase 98.8 1.4E-07 4.8E-12 112.0 21.2 297 24-399 18-432 (595)
250 2hz6_A Endoplasmic reticulum t 98.8 1.4E-09 4.7E-14 126.2 3.0 203 62-303 8-216 (369)
251 4a0p_A LRP6, LRP-6, low-densit 98.8 0.0011 3.8E-08 81.5 55.8 432 10-482 37-509 (628)
252 3ott_A Two-component system se 98.7 0.0024 8.2E-08 81.1 62.1 467 9-524 62-590 (758)
253 1kv9_A Type II quinohemoprotei 98.7 3.2E-06 1.1E-10 105.6 29.6 189 21-238 66-336 (668)
254 3ei3_A DNA damage-binding prot 98.7 0.004 1.4E-07 81.7 58.2 303 204-517 553-952 (1158)
255 1xi4_A Clathrin heavy chain; a 98.6 1.2E-05 4.2E-10 102.7 30.9 140 225-401 47-191 (1630)
256 1npe_A Nidogen, entactin; glyc 98.5 5E-05 1.7E-09 83.1 30.6 221 10-261 36-263 (267)
257 1w6s_A Methanol dehydrogenase 98.5 4.7E-05 1.6E-09 93.0 32.8 323 21-383 62-533 (599)
258 2iwa_A Glutamine cyclotransfer 98.5 1.9E-05 6.5E-10 85.4 25.7 205 11-235 22-237 (266)
259 1flg_A Protein (quinoprotein e 98.5 8.8E-05 3E-09 90.7 34.9 325 21-385 68-548 (582)
260 2fp8_A Strictosidine synthase; 98.5 3.5E-05 1.2E-09 87.0 28.6 235 10-278 19-312 (322)
261 2p4o_A Hypothetical protein; p 98.5 8.5E-05 2.9E-09 83.1 30.8 230 10-270 32-279 (306)
262 1kv9_A Type II quinohemoprotei 98.5 1.8E-05 6.2E-10 98.8 27.7 284 21-309 117-520 (668)
263 2ad6_A Methanol dehydrogenase 98.5 3.9E-05 1.3E-09 93.7 30.0 324 21-385 62-526 (571)
264 3nol_A Glutamine cyclotransfer 98.4 2.3E-05 7.8E-10 83.6 22.1 196 42-268 32-244 (262)
265 3nol_A Glutamine cyclotransfer 98.4 2.2E-05 7.5E-10 83.8 21.9 197 7-224 38-244 (262)
266 3ei3_A DNA damage-binding prot 98.4 0.014 4.7E-07 76.7 52.8 388 11-443 515-999 (1158)
267 2fp8_A Strictosidine synthase; 98.4 0.00012 4.1E-09 82.5 29.6 259 200-481 14-313 (322)
268 2iwa_A Glutamine cyclotransfer 98.4 7E-05 2.4E-09 80.9 25.7 208 41-279 9-237 (266)
269 3v64_C Agrin; beta propeller, 98.3 0.00038 1.3E-08 79.3 32.0 247 9-288 33-284 (349)
270 1ijq_A LDL receptor, low-densi 98.3 0.001 3.4E-08 74.7 34.9 236 22-287 2-246 (316)
271 2ad6_A Methanol dehydrogenase 98.3 6.1E-05 2.1E-09 92.0 26.3 281 21-307 115-523 (571)
272 2p4o_A Hypothetical protein; p 98.3 0.00029 9.9E-09 78.7 29.5 249 40-312 21-279 (306)
273 3v65_B Low-density lipoprotein 98.3 0.00038 1.3E-08 80.6 30.6 254 11-297 78-336 (386)
274 3ott_A Two-component system se 98.3 0.03 1E-06 71.0 59.3 471 9-523 21-548 (758)
275 3nok_A Glutaminyl cyclase; bet 98.3 4.4E-05 1.5E-09 81.4 20.0 191 12-223 57-253 (268)
276 1w6s_A Methanol dehydrogenase 98.3 6.7E-05 2.3E-09 91.6 24.6 284 15-304 111-529 (599)
277 2xbg_A YCF48-like protein; pho 98.2 0.00055 1.9E-08 77.3 30.3 265 9-311 35-313 (327)
278 3mbr_X Glutamine cyclotransfer 98.2 0.00021 7E-09 75.7 24.1 195 10-224 21-223 (243)
279 3p5b_L Low density lipoprotein 98.2 0.0027 9.3E-08 73.7 35.7 247 22-298 84-339 (400)
280 1flg_A Protein (quinoprotein e 98.2 0.00033 1.1E-08 85.6 28.5 282 21-306 117-544 (582)
281 2xe4_A Oligopeptidase B; hydro 98.2 0.0001 3.6E-09 93.4 24.0 152 11-166 175-354 (751)
282 1k3i_A Galactose oxidase precu 98.1 1.9E-05 6.5E-10 98.7 16.7 274 14-310 190-530 (656)
283 3mbr_X Glutamine cyclotransfer 98.1 0.00056 1.9E-08 72.3 25.2 196 42-268 10-223 (243)
284 3nok_A Glutaminyl cyclase; bet 98.1 0.0003 1E-08 75.1 23.1 194 42-268 44-254 (268)
285 3tc9_A Hypothetical hydrolase; 98.1 0.0004 1.4E-08 81.6 25.8 153 11-166 138-301 (430)
286 3sov_A LRP-6, low-density lipo 98.0 0.0022 7.4E-08 71.9 28.8 236 22-288 5-247 (318)
287 3qqz_A Putative uncharacterize 98.0 0.0015 5.2E-08 70.0 25.9 212 46-277 21-251 (255)
288 3qqz_A Putative uncharacterize 98.0 0.0048 1.7E-07 66.1 29.7 209 242-478 20-250 (255)
289 1xi4_A Clathrin heavy chain; a 98.0 3.4E-05 1.2E-09 98.7 14.3 157 613-769 1052-1247(1630)
290 4hw6_A Hypothetical protein, I 98.0 0.0011 3.6E-08 78.0 26.3 254 10-277 139-431 (433)
291 4hw6_A Hypothetical protein, I 98.0 0.0024 8.2E-08 74.9 28.9 236 206-480 140-432 (433)
292 2xe4_A Oligopeptidase B; hydro 97.9 0.00096 3.3E-08 84.5 26.9 157 95-279 175-354 (751)
293 1k3i_A Galactose oxidase precu 97.9 0.00019 6.6E-09 89.6 20.0 285 56-384 190-529 (656)
294 2xbg_A YCF48-like protein; pho 97.9 0.016 5.5E-07 65.1 33.6 280 93-441 35-320 (327)
295 3tc9_A Hypothetical hydrolase; 97.9 0.0023 8E-08 75.0 26.6 153 54-235 139-301 (430)
296 3v64_C Agrin; beta propeller, 97.9 0.0049 1.7E-07 70.0 28.6 201 10-238 73-278 (349)
297 1ijq_A LDL receptor, low-densi 97.9 0.015 5.2E-07 64.9 32.3 204 9-238 29-241 (316)
298 3v65_B Low-density lipoprotein 97.8 0.0051 1.7E-07 71.0 27.6 202 9-238 115-321 (386)
299 3p5b_L Low density lipoprotein 97.8 0.021 7E-07 66.2 32.7 205 8-238 110-323 (400)
300 3kya_A Putative phosphatase; s 97.7 0.0058 2E-07 71.9 25.9 260 11-283 140-479 (496)
301 3m0c_C LDL receptor, low-densi 97.7 0.021 7.1E-07 71.8 32.1 236 22-287 396-640 (791)
302 2xzh_A Clathrin heavy chain 1; 97.6 0.094 3.2E-06 57.1 31.4 234 31-300 49-311 (365)
303 3kya_A Putative phosphatase; s 97.6 0.041 1.4E-06 64.7 30.3 244 206-485 140-479 (496)
304 2ism_A Putative oxidoreductase 97.5 0.025 8.6E-07 64.2 27.7 237 53-309 32-333 (352)
305 1b89_A Protein (clathrin heavy 97.5 0.00012 4.2E-09 84.1 8.0 47 645-691 15-61 (449)
306 1bpo_A Protein (clathrin); cla 97.5 0.19 6.4E-06 56.9 32.4 236 30-301 47-311 (494)
307 3sov_A LRP-6, low-density lipo 97.4 0.03 1E-06 62.5 26.2 200 11-238 36-241 (318)
308 2xzh_A Clathrin heavy chain 1; 97.4 0.063 2.2E-06 58.4 27.0 243 14-278 71-331 (365)
309 1n7d_A LDL receptor, low-densi 97.3 0.00029 9.8E-09 88.2 8.7 240 29-297 384-632 (699)
310 2ism_A Putative oxidoreductase 97.3 0.062 2.1E-06 60.9 27.1 244 9-267 30-333 (352)
311 3m0c_C LDL receptor, low-densi 97.2 0.1 3.5E-06 65.5 30.2 160 8-167 422-590 (791)
312 3a9g_A Putative uncharacterize 97.2 0.2 6.8E-06 56.7 29.8 236 52-309 29-330 (354)
313 3amr_A 3-phytase; beta-propell 97.1 0.078 2.7E-06 58.9 24.7 188 20-234 39-262 (355)
314 3amr_A 3-phytase; beta-propell 97.1 0.13 4.3E-06 57.3 26.2 201 62-287 39-272 (355)
315 2p9w_A MAL S 1 allergenic prot 97.1 0.019 6.4E-07 63.3 18.9 160 6-166 9-215 (334)
316 2p9w_A MAL S 1 allergenic prot 97.1 0.12 4.2E-06 56.9 25.1 203 55-279 16-265 (334)
317 3a9g_A Putative uncharacterize 97.0 0.3 1E-05 55.2 28.7 244 9-267 28-330 (354)
318 2g8s_A Glucose/sorbosone dehyd 97.0 0.24 8.1E-06 56.1 27.5 253 10-267 18-341 (353)
319 2vpj_A Kelch-like protein 12; 96.9 0.032 1.1E-06 61.6 19.0 228 20-281 14-280 (301)
320 1b89_A Protein (clathrin heavy 96.8 0.00077 2.6E-08 77.5 5.4 124 642-769 103-233 (449)
321 2g8s_A Glucose/sorbosone dehyd 96.8 0.58 2E-05 52.8 28.7 248 53-318 19-350 (353)
322 3ii7_A Kelch-like protein 7; p 96.7 0.084 2.9E-06 58.3 20.4 227 22-282 13-275 (306)
323 3das_A Putative oxidoreductase 96.6 1 3.4E-05 50.4 28.7 249 49-309 29-326 (347)
324 3sre_A PON1, serum paraoxonase 96.6 0.38 1.3E-05 54.0 25.1 203 54-287 52-308 (355)
325 2xn4_A Kelch-like protein 2; s 96.6 0.084 2.9E-06 58.2 19.5 229 20-282 15-279 (302)
326 3das_A Putative oxidoreductase 96.6 1.1 3.9E-05 49.9 28.4 248 8-267 30-326 (347)
327 1n7d_A LDL receptor, low-densi 96.5 0.0027 9.1E-08 79.4 7.7 157 10-166 406-571 (699)
328 2vpj_A Kelch-like protein 12; 96.5 0.11 3.8E-06 57.1 19.7 190 62-284 14-236 (301)
329 3ii7_A Kelch-like protein 7; p 96.3 0.31 1E-05 53.7 22.5 188 64-283 13-229 (306)
330 3mkq_B Coatomer subunit alpha; 96.3 0.013 4.4E-07 58.1 9.3 120 654-773 13-132 (177)
331 2ho1_A Type 4 fimbrial biogene 96.3 0.099 3.4E-06 55.3 17.3 153 617-769 44-235 (252)
332 3gyz_A Chaperone protein IPGC; 96.1 0.041 1.4E-06 53.8 11.7 128 614-768 13-149 (151)
333 2xn4_A Kelch-like protein 2; s 96.0 0.23 7.9E-06 54.6 19.4 190 63-284 16-234 (302)
334 4asc_A Kelch repeat and BTB do 96.0 0.41 1.4E-05 53.0 21.1 225 24-282 8-280 (315)
335 1zgk_A Kelch-like ECH-associat 96.0 0.36 1.2E-05 53.2 20.6 229 19-282 23-290 (308)
336 3pbp_A Nucleoporin NUP82; beta 95.9 0.47 1.6E-05 53.7 20.7 159 100-275 27-208 (452)
337 3pbp_A Nucleoporin NUP82; beta 95.9 0.28 9.6E-06 55.5 18.8 110 328-443 31-158 (452)
338 3s25_A Hypothetical 7-bladed b 95.9 2.7 9.4E-05 46.0 28.9 245 324-595 20-292 (302)
339 1zgk_A Kelch-like ECH-associat 95.9 0.47 1.6E-05 52.3 20.8 189 62-283 24-244 (308)
340 2xpi_A Anaphase-promoting comp 95.8 0.099 3.4E-06 63.7 16.3 155 615-769 344-542 (597)
341 2xpi_A Anaphase-promoting comp 95.7 0.07 2.4E-06 65.0 14.3 156 614-769 377-576 (597)
342 4asc_A Kelch repeat and BTB do 95.5 1.4 4.7E-05 48.6 23.3 187 65-284 7-226 (315)
343 3s25_A Hypothetical 7-bladed b 95.4 3.9 0.00013 44.8 28.8 213 102-398 22-255 (302)
344 2vq2_A PILW, putative fimbrial 95.4 0.17 5.8E-06 52.1 14.1 153 617-769 15-208 (225)
345 2y4t_A DNAJ homolog subfamily 95.3 0.19 6.4E-06 58.6 15.8 155 614-768 98-320 (450)
346 3vtx_A MAMA; tetratricopeptide 95.3 0.18 6.3E-06 50.4 13.5 45 644-688 50-99 (184)
347 1cru_A Protein (soluble quinop 95.2 6.3 0.00022 45.9 30.5 105 9-113 26-163 (454)
348 3sbq_A Nitrous-oxide reductase 95.2 3.5 0.00012 48.2 24.6 315 149-483 72-480 (638)
349 2ho1_A Type 4 fimbrial biogene 95.1 0.19 6.6E-06 53.0 13.6 145 599-743 60-235 (252)
350 2q7f_A YRRB protein; TPR, prot 95.0 0.13 4.3E-06 54.0 11.9 44 644-687 102-150 (243)
351 3as5_A MAMA; tetratricopeptide 94.9 0.29 1E-05 48.2 13.8 46 643-688 52-102 (186)
352 3hym_B Cell division cycle pro 94.9 0.41 1.4E-05 52.6 16.3 153 616-768 62-261 (330)
353 2woz_A Kelch repeat and BTB do 94.8 1.2 4.1E-05 49.2 19.8 226 23-282 18-290 (318)
354 2pl2_A Hypothetical conserved 94.8 0.11 3.9E-06 54.0 10.5 152 617-768 12-210 (217)
355 3vtx_A MAMA; tetratricopeptide 94.8 0.71 2.4E-05 45.9 16.3 126 643-768 15-166 (184)
356 2fo7_A Synthetic consensus TPR 94.7 0.26 9E-06 45.4 12.1 70 643-712 11-93 (136)
357 3mkr_A Coatomer subunit epsilo 94.6 0.16 5.5E-06 55.7 11.8 154 616-769 40-226 (291)
358 3ieg_A DNAJ homolog subfamily 94.6 0.35 1.2E-05 53.8 14.9 129 641-769 128-298 (359)
359 2q7f_A YRRB protein; TPR, prot 94.6 0.18 6.1E-06 52.8 11.7 129 641-769 65-219 (243)
360 3as5_A MAMA; tetratricopeptide 94.6 0.36 1.2E-05 47.6 13.4 128 642-769 17-170 (186)
361 3hym_B Cell division cycle pro 94.6 0.23 7.9E-06 54.6 13.1 171 599-769 79-296 (330)
362 3mkr_A Coatomer subunit epsilo 94.6 0.75 2.6E-05 50.2 17.0 145 599-743 50-226 (291)
363 2pl2_A Hypothetical conserved 94.6 0.24 8.3E-06 51.4 12.5 128 642-769 14-177 (217)
364 3gyz_A Chaperone protein IPGC; 94.5 0.22 7.6E-06 48.5 11.2 122 985-1131 28-149 (151)
365 3gw4_A Uncharacterized protein 94.3 0.97 3.3E-05 45.5 16.3 121 644-770 37-194 (203)
366 3gw4_A Uncharacterized protein 94.3 0.25 8.5E-06 50.0 11.6 126 643-768 2-172 (203)
367 3uq3_A Heat shock protein STI1 94.3 0.28 9.4E-06 51.7 12.4 128 641-768 46-198 (258)
368 3sre_A PON1, serum paraoxonase 94.3 8.5 0.00029 43.0 30.3 196 11-234 51-297 (355)
369 2be1_A Serine/threonine-protei 94.3 3.3 0.00011 45.9 21.3 142 22-163 11-181 (339)
370 1w3b_A UDP-N-acetylglucosamine 94.2 0.67 2.3E-05 52.6 16.4 126 644-769 180-331 (388)
371 2uvk_A YJHT; unknown function, 94.2 0.98 3.4E-05 50.8 17.5 92 62-156 19-128 (357)
372 2uvk_A YJHT; unknown function, 94.1 1.3 4.4E-05 49.8 18.2 58 227-286 286-349 (357)
373 1tl2_A L10, protein (tachylect 94.0 0.43 1.5E-05 49.0 12.2 144 10-164 41-206 (236)
374 4eqf_A PEX5-related protein; a 94.0 0.32 1.1E-05 54.8 12.9 153 617-769 72-273 (365)
375 3ieg_A DNAJ homolog subfamily 93.9 0.4 1.4E-05 53.3 13.4 28 997-1024 310-337 (359)
376 4gyw_A UDP-N-acetylglucosamine 93.9 0.5 1.7E-05 58.8 15.2 99 616-714 15-137 (723)
377 3u4t_A TPR repeat-containing p 93.8 0.34 1.2E-05 51.7 12.1 71 642-712 12-98 (272)
378 3cv0_A Peroxisome targeting si 93.8 0.38 1.3E-05 52.8 12.8 126 643-768 148-311 (327)
379 1ouv_A Conserved hypothetical 93.8 1.5 5.1E-05 46.8 17.2 123 646-768 55-211 (273)
380 4gyw_A UDP-N-acetylglucosamine 93.7 0.28 9.5E-06 61.1 12.4 101 642-742 18-136 (723)
381 2c2l_A CHIP, carboxy terminus 93.7 0.57 1.9E-05 50.9 13.6 29 996-1024 7-35 (281)
382 1tl2_A L10, protein (tachylect 93.7 1.1 3.7E-05 46.1 14.3 176 105-308 4-199 (236)
383 1cru_A Protein (soluble quinop 93.6 2.5 8.4E-05 49.4 19.8 63 92-154 25-98 (454)
384 1w3b_A UDP-N-acetylglucosamine 93.6 1.1 3.7E-05 50.9 16.6 155 615-769 174-365 (388)
385 2zwa_A Leucine carboxyl methyl 93.6 2.7 9.2E-05 52.1 21.1 207 214-449 396-641 (695)
386 2woz_A Kelch repeat and BTB do 93.5 3 0.0001 45.9 19.5 186 65-283 18-235 (318)
387 1fch_A Peroxisomal targeting s 93.5 0.3 1E-05 54.9 11.4 169 599-768 87-310 (368)
388 2vq2_A PILW, putative fimbrial 93.4 0.53 1.8E-05 48.2 12.4 129 641-769 16-173 (225)
389 1fch_A Peroxisomal targeting s 93.4 0.73 2.5E-05 51.6 14.5 154 615-769 69-277 (368)
390 4eqf_A PEX5-related protein; a 93.2 0.23 7.9E-06 56.0 9.8 171 599-769 88-307 (365)
391 3uq3_A Heat shock protein STI1 93.1 0.65 2.2E-05 48.7 12.7 123 643-768 15-164 (258)
392 4gco_A Protein STI-1; structur 93.1 0.73 2.5E-05 43.0 11.5 81 642-743 22-107 (126)
393 2y4t_A DNAJ homolog subfamily 93.0 0.65 2.2E-05 53.8 13.7 152 618-769 151-355 (450)
394 2xcb_A PCRH, regulatory protei 93.0 0.56 1.9E-05 44.6 11.0 80 643-743 28-112 (142)
395 2vgx_A Chaperone SYCD; alterna 93.0 0.58 2E-05 45.1 11.0 81 642-743 30-115 (148)
396 4i17_A Hypothetical protein; T 92.9 0.83 2.8E-05 47.3 13.0 102 644-745 18-145 (228)
397 3ro3_A PINS homolog, G-protein 92.8 0.75 2.6E-05 43.9 11.6 40 649-688 32-75 (164)
398 3mv2_B Coatomer subunit epsilo 92.4 0.64 2.2E-05 50.9 11.4 101 642-742 109-236 (310)
399 1qqe_A Vesicular transport pro 92.4 0.9 3.1E-05 49.5 12.9 47 643-689 87-145 (292)
400 1hh8_A P67PHOX, NCF-2, neutrop 92.3 0.95 3.2E-05 46.1 12.3 100 644-743 17-147 (213)
401 3qky_A Outer membrane assembly 92.3 1.5 5.1E-05 46.5 14.3 195 909-1134 19-243 (261)
402 1hxi_A PEX5, peroxisome target 92.2 0.7 2.4E-05 42.7 10.0 82 641-743 25-111 (121)
403 3upv_A Heat shock protein STI1 92.2 1.1 3.7E-05 41.3 11.5 80 643-743 14-98 (126)
404 4a1s_A PINS, partner of inscut 92.0 0.61 2.1E-05 53.3 11.5 118 641-764 231-384 (411)
405 3ulq_A Response regulator aspa 91.8 1.9 6.5E-05 48.8 15.3 102 641-742 151-289 (383)
406 3cv0_A Peroxisome targeting si 91.8 0.61 2.1E-05 51.1 10.7 126 643-768 31-197 (327)
407 1qqe_A Vesicular transport pro 91.8 1.5 5E-05 47.7 13.7 128 642-769 46-225 (292)
408 3ma5_A Tetratricopeptide repea 91.8 1.4 4.7E-05 38.9 11.1 83 660-769 5-87 (100)
409 3ulq_A Response regulator aspa 91.7 1.7 5.7E-05 49.3 14.6 126 643-768 194-364 (383)
410 3nf1_A KLC 1, kinesin light ch 91.4 1.9 6.6E-05 46.5 14.3 81 663-743 112-221 (311)
411 3qky_A Outer membrane assembly 91.4 1.1 3.9E-05 47.5 12.0 20 724-743 155-174 (261)
412 3sz7_A HSC70 cochaperone (SGT) 91.3 1.3 4.5E-05 43.1 11.5 81 642-743 20-105 (164)
413 1xnf_A Lipoprotein NLPI; TPR, 91.3 2.5 8.6E-05 44.6 14.8 154 616-769 49-241 (275)
414 2zwa_A Leucine carboxyl methyl 91.1 3.5 0.00012 51.1 17.6 200 61-283 396-639 (695)
415 1ouv_A Conserved hypothetical 91.1 2.7 9.2E-05 44.7 14.9 126 643-768 16-175 (273)
416 4abn_A Tetratricopeptide repea 91.1 0.43 1.5E-05 56.4 9.0 103 641-743 145-284 (474)
417 3qhy_B Beta-lactamase inhibito 91.0 4.7 0.00016 43.6 16.5 223 11-280 25-247 (282)
418 3fp2_A TPR repeat-containing p 90.9 1.1 3.9E-05 53.1 12.7 127 617-743 250-404 (537)
419 3edt_B KLC 2, kinesin light ch 90.9 1.7 5.7E-05 46.1 12.8 29 662-690 85-113 (283)
420 3fp2_A TPR repeat-containing p 90.9 1.3 4.4E-05 52.6 13.1 153 616-768 282-487 (537)
421 1xnf_A Lipoprotein NLPI; TPR, 90.8 1.3 4.3E-05 47.1 11.8 49 641-689 51-104 (275)
422 1elw_A TPR1-domain of HOP; HOP 90.7 1.3 4.6E-05 39.4 10.2 81 642-743 13-98 (118)
423 1a17_A Serine/threonine protei 90.6 1.5 5.2E-05 42.2 11.2 71 643-713 23-106 (166)
424 2kck_A TPR repeat; tetratricop 90.6 1.1 3.7E-05 39.6 9.4 48 642-689 15-67 (112)
425 2be1_A Serine/threonine-protei 90.4 2.3 7.7E-05 47.3 13.4 109 64-172 11-136 (339)
426 4gco_A Protein STI-1; structur 90.4 1.9 6.6E-05 40.0 11.2 117 989-1133 9-125 (126)
427 3sf4_A G-protein-signaling mod 90.4 1.9 6.7E-05 48.6 13.5 113 642-760 196-344 (406)
428 3q49_B STIP1 homology and U bo 90.3 1.5 5.1E-05 40.7 10.5 81 642-743 18-103 (137)
429 2qfc_A PLCR protein; TPR, HTH, 90.3 1 3.5E-05 49.0 10.5 119 643-767 125-281 (293)
430 4a1s_A PINS, partner of inscut 90.2 1.3 4.6E-05 50.4 12.0 127 642-768 95-288 (411)
431 2wg3_C Hedgehog-interacting pr 90.2 32 0.0011 39.9 26.0 243 10-273 14-367 (463)
432 2gw1_A Mitochondrial precursor 90.1 1.8 6E-05 51.0 13.3 170 599-769 260-475 (514)
433 4ga2_A E3 SUMO-protein ligase 90.0 1.1 3.7E-05 43.2 9.4 47 642-688 40-91 (150)
434 1na0_A Designed protein CTPR3; 90.0 2.4 8.3E-05 38.0 11.5 80 643-743 19-103 (125)
435 3nf1_A KLC 1, kinesin light ch 90.0 2.9 9.9E-05 45.0 14.0 107 662-768 69-220 (311)
436 3rkv_A Putative peptidylprolyl 89.9 1.4 4.9E-05 42.7 10.3 119 990-1118 8-130 (162)
437 2c2l_A CHIP, carboxy terminus 89.7 0.69 2.3E-05 50.2 8.5 152 617-771 11-198 (281)
438 2vyi_A SGTA protein; chaperone 89.7 2.6 8.8E-05 38.2 11.5 81 642-743 21-106 (131)
439 2lni_A Stress-induced-phosphop 89.7 1.6 5.5E-05 40.0 10.1 81 642-743 25-110 (133)
440 2vsy_A XCC0866; transferase, g 89.6 2 7E-05 51.7 13.5 103 641-743 31-154 (568)
441 4gcn_A Protein STI-1; structur 89.5 0.92 3.2E-05 42.3 8.1 47 642-688 17-68 (127)
442 2e2e_A Formate-dependent nitri 89.5 0.62 2.1E-05 46.1 7.3 98 645-742 22-140 (177)
443 4abn_A Tetratricopeptide repea 89.5 0.89 3E-05 53.6 9.8 128 641-768 110-283 (474)
444 3q15_A PSP28, response regulat 89.2 5.1 0.00018 45.1 15.8 126 643-768 192-361 (378)
445 2gw1_A Mitochondrial precursor 89.1 1.7 5.7E-05 51.1 12.1 45 644-688 281-330 (514)
446 2vgx_A Chaperone SYCD; alterna 89.1 3 0.0001 39.9 11.7 127 988-1138 16-145 (148)
447 3q15_A PSP28, response regulat 88.7 3.2 0.00011 46.8 13.6 102 642-743 150-287 (378)
448 2r5s_A Uncharacterized protein 88.4 3.9 0.00013 40.2 12.4 102 642-743 15-134 (176)
449 2ifu_A Gamma-SNAP; membrane fu 88.4 1.8 6E-05 47.5 10.8 25 663-688 117-141 (307)
450 3sf4_A G-protein-signaling mod 88.4 1.9 6.5E-05 48.7 11.4 155 614-768 51-292 (406)
451 3u4t_A TPR repeat-containing p 88.3 1.5 5E-05 46.6 9.8 131 617-768 10-167 (272)
452 2ifu_A Gamma-SNAP; membrane fu 88.2 5 0.00017 43.7 14.4 127 643-770 46-222 (307)
453 3n71_A Histone lysine methyltr 88.2 0.63 2.2E-05 54.9 7.2 81 663-743 352-461 (490)
454 2vsy_A XCC0866; transferase, g 88.1 2.3 7.9E-05 51.2 12.5 98 617-714 30-154 (568)
455 3ro2_A PINS homolog, G-protein 88.1 2.3 8E-05 46.2 11.6 129 615-743 48-249 (338)
456 3ro2_A PINS homolog, G-protein 88.1 1.9 6.4E-05 47.0 10.8 48 641-688 191-249 (338)
457 3b7f_A Glycosyl hydrolase, BNR 88.0 39 0.0013 38.0 26.8 151 9-163 54-259 (394)
458 3qou_A Protein YBBN; thioredox 87.9 2.8 9.6E-05 45.4 11.9 102 642-743 126-245 (287)
459 2ond_A Cleavage stimulation fa 87.8 3.1 0.0001 45.5 12.2 129 641-769 107-267 (308)
460 4i17_A Hypothetical protein; T 87.6 3.4 0.00012 42.5 11.9 110 660-769 5-143 (228)
461 2pzi_A Probable serine/threoni 87.6 1.3 4.5E-05 54.8 10.0 105 641-746 441-563 (681)
462 3edt_B KLC 2, kinesin light ch 87.6 2.8 9.6E-05 44.3 11.5 28 662-689 127-154 (283)
463 2xev_A YBGF; tetratricopeptide 87.4 4.3 0.00015 37.0 11.3 80 643-743 12-102 (129)
464 2xev_A YBGF; tetratricopeptide 87.4 9.3 0.00032 34.6 13.7 117 996-1134 5-124 (129)
465 2fo7_A Synthetic consensus TPR 87.3 3.5 0.00012 37.3 10.7 106 663-768 2-128 (136)
466 1hz4_A MALT regulatory protein 87.2 8.5 0.00029 43.0 15.9 155 614-768 57-278 (373)
467 1hz4_A MALT regulatory protein 87.1 5.6 0.00019 44.5 14.2 128 642-769 62-241 (373)
468 2dba_A Smooth muscle cell asso 87.1 3 0.0001 39.0 10.3 82 641-743 36-125 (148)
469 1kt0_A FKBP51, 51 kDa FK506-bi 86.9 3.1 0.00011 48.6 12.2 117 992-1118 267-384 (457)
470 2fbn_A 70 kDa peptidylprolyl i 86.6 5.6 0.00019 39.9 12.6 115 992-1118 37-155 (198)
471 3ma5_A Tetratricopeptide repea 86.6 3 0.0001 36.6 9.3 70 643-718 17-91 (100)
472 1p5q_A FKBP52, FK506-binding p 86.5 3.5 0.00012 45.8 11.9 117 992-1118 146-263 (336)
473 3rjv_A Putative SEL1 repeat pr 86.5 7.2 0.00025 39.8 13.5 29 660-688 83-115 (212)
474 1hh8_A P67PHOX, NCF-2, neutrop 86.4 5.7 0.00019 40.1 12.7 97 618-714 14-147 (213)
475 4ga2_A E3 SUMO-protein ligase 86.3 2.2 7.4E-05 41.0 8.8 71 644-714 8-91 (150)
476 1elr_A TPR2A-domain of HOP; HO 86.1 4.2 0.00015 36.7 10.5 87 643-743 14-105 (131)
477 2xcb_A PCRH, regulatory protei 86.1 4.8 0.00016 37.9 11.1 123 987-1133 12-137 (142)
478 3q6k_A 43.2 kDa salivary prote 85.8 50 0.0017 37.0 22.1 101 367-471 221-342 (381)
479 3rkv_A Putative peptidylprolyl 85.5 2.8 9.6E-05 40.5 9.3 19 725-743 105-123 (162)
480 2ond_A Cleavage stimulation fa 85.3 5.5 0.00019 43.4 12.6 120 650-769 81-229 (308)
481 3rjv_A Putative SEL1 repeat pr 85.2 8.5 0.00029 39.2 13.3 125 643-768 28-193 (212)
482 4hvt_A Ritya.17583.B, post-pro 85.1 74 0.0025 39.1 23.6 245 251-519 131-429 (711)
483 2pzi_A Probable serine/threoni 85.0 3.2 0.00011 51.4 11.5 133 635-768 393-559 (681)
484 3u3w_A Transcriptional activat 85.0 1.8 6.1E-05 47.0 8.3 116 643-764 125-278 (293)
485 3uc1_A DNA gyrase subunit A; D 85.0 44 0.0015 36.7 19.5 156 9-166 94-279 (327)
486 3urz_A Uncharacterized protein 84.9 3.2 0.00011 42.2 9.8 46 643-688 14-80 (208)
487 2hr2_A Hypothetical protein; a 84.9 3.7 0.00013 40.0 9.4 131 993-1130 11-150 (159)
488 3lvg_A Clathrin heavy chain 1; 84.7 0.0028 9.6E-08 71.8 -14.4 63 646-708 38-103 (624)
489 3qhy_B Beta-lactamase inhibito 84.6 10 0.00036 40.8 14.1 184 52-279 24-207 (282)
490 3lvg_A Clathrin heavy chain 1; 84.6 0.028 9.5E-07 63.9 -6.6 151 614-764 148-325 (624)
491 2hr2_A Hypothetical protein; a 84.6 3.7 0.00013 39.9 9.2 25 664-688 59-83 (159)
492 2fbn_A 70 kDa peptidylprolyl i 84.5 2.5 8.6E-05 42.5 8.7 26 663-688 89-114 (198)
493 4f3v_A ESX-1 secretion system 84.3 2.6 8.8E-05 45.4 8.8 108 616-743 108-234 (282)
494 4g26_A Pentatricopeptide repea 84.1 3.4 0.00012 48.9 10.7 29 661-689 104-132 (501)
495 3uc1_A DNA gyrase subunit A; D 83.0 59 0.002 35.6 22.8 205 11-235 43-279 (327)
496 1a17_A Serine/threonine protei 82.8 5.2 0.00018 38.1 9.9 82 662-743 13-107 (166)
497 4g26_A Pentatricopeptide repea 82.5 6.6 0.00023 46.4 12.3 130 641-770 34-202 (501)
498 1ihg_A Cyclophilin 40; ppiase 81.6 3.2 0.00011 47.0 8.8 24 665-688 226-249 (370)
499 3k9i_A BH0479 protein; putativ 81.5 2.9 9.8E-05 37.9 7.0 61 662-743 27-87 (117)
500 2h6f_A Protein farnesyltransfe 81.5 4.7 0.00016 45.8 10.2 71 618-688 105-192 (382)
No 1
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=100.00 E-value=2.2e-110 Score=897.04 Aligned_cols=316 Identities=43% Similarity=0.744 Sum_probs=309.3
Q ss_pred cccccCCCCCCchhHHHHhcchHHHHHHcCCHHHHHHHHHhhcCcccccccHHHHHHHHhcceeeeccCCCCCChhhhhh
Q 000961 890 AVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFSSAPVIPLAVE 969 (1208)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f~~a~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1208)
++||+|++|.++.+.|++||++|+||||||+||+||+|||||+|+|||+|||++|+++|.+|++|+|++|++|||..|++
T Consensus 1 ~~~~~p~~g~~~~~~W~~nS~laadhvaAGsFe~A~~lLnrQ~Givnf~PLk~~F~~~y~~s~~~l~~~~~~p~l~~~~~ 80 (320)
T 3mkr_B 1 GFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPN 80 (320)
T ss_dssp CCCCCCCCCCCHHHHHHHHCCCHHHHHHTTCHHHHHHHHHHHSCBCCCGGGHHHHHHHHTTSCEEECSSTTSCCEEECCB
T ss_pred CCccCCCCCCCHHHHHHHcCCcHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhccCCCCCCcchhhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHH
Q 000961 970 RGWNESASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVL 1049 (1208)
Q Consensus 970 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 1049 (1208)
|||.+.+.++ .+|++|.++++|.++||+|||+||+|||+||++.||+|||.+||++|++++|++|++++|+||||||+
T Consensus 81 r~~~~~~~~~--~lP~i~~~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYil 158 (320)
T 3mkr_B 81 RNWKDAGLKN--GVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIV 158 (320)
T ss_dssp TTTTTCCSSS--CCBCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccc--CCCCcccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHH
Confidence 9987765554 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhccCCC---Cc-hhhhHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCchhHHHHH
Q 000961 1050 GLQLELKRRELKD---DP-VRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTA 1125 (1208)
Q Consensus 1050 ~~~~e~~r~~~~~---~~-~r~~el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a 1125 (1208)
||+||++||++++ ++ ||+||||||||||+|||.|++||||+||++|||+|||+||++||||||+++|+ +++++||
T Consensus 159 al~iEl~Rr~l~~~~~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~~~~qA 237 (320)
T 3mkr_B 159 GLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-PEVAQQT 237 (320)
T ss_dssp HHHHHHHHTTSCCCSHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HHHHHHH
T ss_pred HHHHHHHHHhcccCCchhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 9999999999987 56 99999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhcCCCCceeecCCCCCCeeEeccccccccCCCccccCCCCCcccCCCCCCCccCcccccccCCCCcCccccCC
Q 000961 1126 RQVLQAAERNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCSPT 1205 (1208)
Q Consensus 1126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~~c~~~~~~~~g~~~~g~~~~~~ 1205 (1208)
|||+++|||+|+|+++||||++|||+||++||||||+|+|.|+||||||+|+|+|||++|+||+|++||++++|||+++.
T Consensus 238 rkil~~ce~~~~da~eidyD~~~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~~~~GL~~~~~ 317 (320)
T 3mkr_B 238 RKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDVIGLRISPL 317 (320)
T ss_dssp HHHHHHHHHSCCBSSCCSCCTTSCCCBBTTTCCBCCTTSCCEECTTTCCEECGGGTTSBCTTTSSBBSSCCCCCCCCSGG
T ss_pred HHHHHHHhcCCCCccccCCCCCCccceecCCCccccCCCCCccCCCCCCeechhhCCCCCCCCcCcccCCcccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 000961 1206 QIR 1208 (1208)
Q Consensus 1206 ~~~ 1208 (1208)
|||
T Consensus 318 ~~~ 320 (320)
T 3mkr_B 318 QFR 320 (320)
T ss_dssp GCC
T ss_pred ccC
Confidence 998
No 2
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=100.00 E-value=7.3e-107 Score=867.40 Aligned_cols=304 Identities=31% Similarity=0.465 Sum_probs=295.4
Q ss_pred CCCCCchhHHHHhcchHHHHHHcCCHHHHHHHHHhhcCcccccccHHHHHHHHhcceeeeccCC-CCCChhhhhhcCCCC
Q 000961 896 TPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMFLDLHSGSHTYLRAFS-SAPVIPLAVERGWNE 974 (1208)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~g~f~~a~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 974 (1208)
..|.++.+.|++||++||||||||+||+||+|||||+|+|||+|||++|+++|.+|++|+|++| ++|||..|++|+|.+
T Consensus 19 ~~~~~~~~~W~~nS~laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e 98 (325)
T 3mv2_A 19 QGPHMETAIWIKNSKLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDT 98 (325)
T ss_dssp --CCHHHHHHHHHCCSHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSS
T ss_pred eCCCcHHHHHHHcCCcHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccc
Confidence 3456889999999999999999999999999999999999999999999999999999999999 999999999999877
Q ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhh
Q 000961 975 SASPNVRGPPALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLE 1054 (1208)
Q Consensus 975 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e 1054 (1208)
.+.++ .+|++| ++++|.++||+|||+||+|||+||++.||+|||.+||++|+|++|++|++++|+||||||+||+||
T Consensus 99 ~~~~~--~lP~i~-~l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iE 175 (325)
T 3mv2_A 99 VSEDQ--ILPYVP-GLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIE 175 (325)
T ss_dssp SCGGG--CCBCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc--CCCCCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65444 699999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCc-hhhhHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHHHHHh
Q 000961 1055 LKRRELKDDP-VRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAE 1133 (1208)
Q Consensus 1055 ~~r~~~~~~~-~r~~el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~~~~~ 1133 (1208)
++||+|++++ +|+||||||||||+|||.|++||||+||++|||+|||+||++||||||+++|+ +++++|||||+++||
T Consensus 176 l~Rr~l~~~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~~a~qArkil~~ce 254 (325)
T 3mv2_A 176 LERRSLKEGNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS-GPRAEQARKIKNKAD 254 (325)
T ss_dssp HHHHTCCTTCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-SHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence 9999999888 99999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCCceeecCCCCCCeeEeccccccccCCCccccCCCCCcccCCCCCCCccCcccccccCCCCcCcccc
Q 000961 1134 RNPTDATQLNYDFRNPFVICGATHVPIYRGQKDVSCPYCTTRFVPSQEGQLCSVCDLAVVGVDASGLLCS 1203 (1208)
Q Consensus 1134 ~~~~~~~~~~~~~~~~~~~c~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~~c~~~~~~~~g~~~~g~~~~ 1203 (1208)
|+|+|+++||||++|||+||++||||||+|+|.|+||||||+|+|+|||++|+||+|++||++++|||++
T Consensus 255 ~~~~Da~eidyD~~~~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~~a~GL~~~ 324 (325)
T 3mv2_A 255 SMASDAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGAPASGLRIR 324 (325)
T ss_dssp TSCCCSSCCSCCTTSCEEECTTTCCEEESSSCEEECTTTCCEEEGGGTTSBCSSSSCBBTTCCCCCCCCB
T ss_pred cCCCCccccCCCCCCCceeecCCcccccCCCCCccCCCCCCeechhhCCCCCCCCcCcccCCCccceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-76 Score=771.01 Aligned_cols=704 Identities=26% Similarity=0.466 Sum_probs=607.9
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
+.++|++|+++|++++|||++++|++++.+|.|+|||+.+++.+..+.+|.++|++++|+|++++|++|+.||.|+|||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCEEEEEEee-CCCEEEEEECCCe
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHP-KEDLVVSASLDQT 158 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg~ 158 (1208)
.+++.+.++.+|.+.|++++|+|++++|++++.||+|++||+.++ .....+.+|.+.|++++|+| +++.+++++.||+
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence 999999999999999999999999999999999999999999987 77888899999999999999 7899999999999
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCC
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP--TLPLIVSGADDRQVKLWRMNET 236 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~g~~L~sgs~dg~I~iwd~~~~ 236 (1208)
|++||+.+..... .....+...+.+++|+| +++++++++.||.|++||+.++
T Consensus 165 v~vwd~~~~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 165 VKVWSLGQSTPNF--------------------------TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp EEEEETTCSSCSE--------------------------EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred EEEEECCCCccee--------------------------EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999997644321 12234558899999999 9999999999999999999998
Q ss_pred ceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCC--EEEEEECCCee
Q 000961 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMI 314 (1208)
Q Consensus 237 ~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~--~la~g~~~gi~ 314 (1208)
+. +..+.+|...|++++|+|+++++++++.||.|++||+.+++.+..+..+...+++++|+|++. +++++.++++.
T Consensus 219 ~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp EE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred cE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEE
Confidence 86 778889999999999999999999999999999999999999999999999999999999987 79999999999
Q ss_pred eEeeCCCcceEEec--CCEEEEE-eC---CeEEE------EEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEE
Q 000961 315 VFKLERERPAFAVS--GDSLFYA-KD---RFLRY------YEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLI 382 (1208)
Q Consensus 315 v~~l~~~~~~~s~~--~~~L~~~-~d---~~i~v------~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv 382 (1208)
+|++....+....+ +..++.. .+ ..+.. |++..+............+ ...+.+++|+|+|+.+++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~la~ 373 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV---DVFPQSLAHSPNGRFVTV 373 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC---SSCCSEEEECTTSSEEEE
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC---ccCCceeEECCCCCEEEE
Confidence 99998887765554 4444443 11 11211 2222332222111111111 337899999999998887
Q ss_pred EEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeeeecCCc-ceEEEEEe
Q 000961 383 CSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPI-AADAIFYA 461 (1208)
Q Consensus 383 ~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~-~v~~i~~s 461 (1208)
++ ++.+.+|++... ...+.+.+.+++|+|+++++++++.+++|++|+.- ..+. .+..+.|+
T Consensus 374 ~~---~~~~~i~~~~~~--------~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~-------~~~~~~v~~~~~s 435 (814)
T 3mkq_A 374 VG---DGEYVIYTALAW--------RNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF-------KEVTSWSVPMHSA 435 (814)
T ss_dssp EE---TTEEEEEETTTT--------EEEEEEECSEEEECTTSSCEEEECTTCCEEEEETT-------EECTTCCCCCSSC
T ss_pred ec---CCEEEEEECccc--------cccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECC-------CCccceEEcCCcC
Confidence 66 489999997532 33456778899999999999999999999999632 2222 67788899
Q ss_pred CCc----cEEE-EeCCeEEEEEcCCCeEEEEEeCCCeeEEEECCCCCEEEEE------eCCeEEEEecC-----------
Q 000961 462 GTG----NLLC-RAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALL------SKHAIIIASKK----------- 519 (1208)
Q Consensus 462 ~dg----~~La-s~dg~v~lwdl~~~~~l~~~~~~~v~~v~ws~dg~~la~~------s~~~i~i~~~~----------- 519 (1208)
|+| .++. ..++.|++||+.+++.+..+.... ..+.|||||++|+++ +++.++++..+
T Consensus 436 ~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (814)
T 3mkq_A 436 IDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA-KDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNG 514 (814)
T ss_dssp CCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE-EEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHT
T ss_pred ccceecceEEEEecCCEEEEEECCcCcEEEEEecCC-CEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhcc
Confidence 998 4443 358999999999999999988743 499999999999999 77777776332
Q ss_pred -----------ccceeeeecceeeeeeEEecCCeEEEec-CCeeeeEecCCceeEEEeccccEEEEE--EeCCEEEEEec
Q 000961 520 -----------LVHQCTLHETIRVKSGAWDDNGVFIYTT-LNHIKYCLPNGDSGIIRTLDVPIYITK--VSGNTIFCLDR 585 (1208)
Q Consensus 520 -----------~~~~~~~~e~~~iks~~wd~~~~~iy~t-~~~i~y~l~~g~~g~i~~l~~~~~l~~--~~~~~l~~l~r 585 (1208)
++.+..+++ .++++.|+ +++++|++ .++++|+ .+++.+.+..++.++++++ ..+++++++++
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~--~i~s~~w~-~~~~i~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 590 (814)
T 3mkq_A 515 NIDDSEGVDEAFDVLYELSE--SITSGKWV-GDVFIFTTATNRLNYF-VGGKTYNLAHYTKEMYLLGYLARDNKVYLADR 590 (814)
T ss_dssp CCBTTTBCTTTEEEEEEECS--CCSEEEEE-TTEEEEECTTSEEEEE-ETTEEEEEEECSSCCEEEEEEGGGTEEEEECT
T ss_pred CCccccchhhheeeeeEecc--EEEeeEEe-CCEEEEEcCCCeEEEE-eCCeeEEEEECCccEEEEEEEecCCEEEEEcC
Confidence 233333333 57799997 68999998 5899996 6999999999999999988 58999999999
Q ss_pred CCceEEEEcChhh-----------HHH----HHhhcc-cccccchHHHHHHHhCCChhhhhccccCcchhhHHHHhcCCH
Q 000961 586 DGKNRAIVIDATE-----------YDH----VMSMIR-NSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI 649 (1208)
Q Consensus 586 ~~~~~~~~ld~~e-----------~~~----~l~~i~-~~~~~~~~i~~yl~~~g~~e~Al~~~~~~~~~f~lal~~g~~ 649 (1208)
++.+..+.++..+ +++ +++.++ ...+ +.++.||+++|+++.|+++++++..+|++|+++|||
T Consensus 591 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~--~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 591 EVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSL--TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQL 668 (814)
T ss_dssp TCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHH--HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCH
T ss_pred CCCEEEEEECcHHHHHhHHHHhCCHHHHHHHHHhcCCchHHH--HHHHHHHHhCCChHHheecCCCcchheehhhhcCCH
Confidence 9999999999776 333 333345 5554 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHh
Q 000961 650 QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALY 729 (1208)
Q Consensus 650 ~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~ 729 (1208)
++|+++|+.++++..|++||++|+++|++++|++||++++|++++.+||...|+.+++.+++++++.+|++..+++++++
T Consensus 669 ~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 669 TLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWI 748 (814)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHcCCChHHHHHHHhcCChH
Q 000961 730 LGDVKERVKILESAGHLPLAYITASVHGLQD 760 (1208)
Q Consensus 730 lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~ 760 (1208)
+|++++|+++|+++++|++|+++|++|++++
T Consensus 749 ~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 749 AGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp HTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred cCCHHHHHHHHHHcCChHHHHHHHHHhCCCh
Confidence 9999999999999999999999999999877
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-52 Score=522.32 Aligned_cols=490 Identities=24% Similarity=0.391 Sum_probs=409.1
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
++|+||++.|++++|||||++||+|+.|++|+||| .+++.++++.+|.++|++++|+|++++|++++.|++|+|||. +
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~ 87 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-N 87 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-T
T ss_pred eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-C
Confidence 46999999999999999999999999999999999 588999999999999999999999999999999999999996 5
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-----------------------------------
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC----------------------------------- 127 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~----------------------------------- 127 (1208)
++++.++.+|...|.+++|+|++++|++++.|+.+++|+......
T Consensus 88 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (577)
T 2ymu_A 88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccc
Confidence 788999999999999999999999999999999999999654321
Q ss_pred -----EEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 128 -----ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 128 -----i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
......|...|.++.|+|+++++++++.|+.|++||... .....+.+
T Consensus 168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~----------------------------~~~~~~~~ 219 (577)
T 2ymu_A 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------------------------QLLQTLTG 219 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS----------------------------CEEEEEEC
T ss_pred cceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC----------------------------cEEEEEec
Confidence 122234556667777777777777777777777777432 12346778
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 000961 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~ 282 (1208)
|...|.+++|+|++++|++++.|+.|++|+..... +..+.+|...|.+++|+|+++.+++++.|+.|++||. +++.
T Consensus 220 ~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~---~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~ 295 (577)
T 2ymu_A 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQL 295 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCE---EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcE
Confidence 99999999999999999999999999999976543 7788999999999999999999999999999999996 5677
Q ss_pred EEEeecCCCCEEEEEEeCCCCEEEEEECCC-eeeEeeCCCcc-------------eEEecCCEEEEE-eCCeEEEEEccC
Q 000961 283 VQTFRREHDRFWILASHPEMNLLAAGHDSG-MIVFKLERERP-------------AFAVSGDSLFYA-KDRFLRYYEFST 347 (1208)
Q Consensus 283 ~~~~~~~~~~i~~la~sp~~~~la~g~~~g-i~v~~l~~~~~-------------~~s~~~~~L~~~-~d~~i~v~d~~~ 347 (1208)
+..+..|...+++++++|+++.+++++.++ +.+|+...... ++++++..++++ .++.+++|+..
T Consensus 296 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~- 374 (577)
T 2ymu_A 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 374 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-
Confidence 888889999999999999999999887655 67898654321 456678888888 89999999964
Q ss_pred CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEE
Q 000961 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFA 427 (1208)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l 427 (1208)
++... .+.. + ...|++++|+|+++++++. +.++.+++|+... .....+.+|...+.+++|+|+++++
T Consensus 375 ~~~~~--~~~~--~---~~~v~~~~~s~dg~~l~~~--~~d~~v~~~~~~~----~~~~~~~~~~~~v~~~~~s~d~~~l 441 (577)
T 2ymu_A 375 GQLLQ--TLTG--H---SSSVRGVAFSPDGQTIASA--SDDKTVKLWNRNG----QLLQTLTGHSSSVWGVAFSPDDQTI 441 (577)
T ss_dssp CCEEE--EEEC--C---SSCEEEEEECTTSSCEEEE--ETTSEEEEECTTC----CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CCEEE--EecC--C---CCCeEEEEECCCCCEEEEE--eCCCEEEEEeCCC----CEEEEecCCCCCeEEEEECCCCCEE
Confidence 33332 2332 2 2389999999999987653 3578999998653 3334667899999999999999999
Q ss_pred EEEcCCCEEEEEecCCceeeeecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEeC--CCeeEEEECCCC
Q 000961 428 VLDKSSNQVLVKNLKNEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDM 502 (1208)
Q Consensus 428 ~~~~~dg~I~Iwdl~~~~~~~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~~--~~v~~v~ws~dg 502 (1208)
++++.|++|++||..++.+..+..|. .|.+++|+|+|++|+++ |+.|++||. +++.+..+.. ..|..++|+|||
T Consensus 442 ~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 442 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 520 (577)
T ss_dssp EEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC
Confidence 99999999999999988888888877 99999999999999874 899999995 6788888776 679999999999
Q ss_pred CEEEEEeCCe-EEEEecCccceeeeec-ceeeeeeEEecCC
Q 000961 503 ESVALLSKHA-IIIASKKLVHQCTLHE-TIRVKSGAWDDNG 541 (1208)
Q Consensus 503 ~~la~~s~~~-i~i~~~~~~~~~~~~e-~~~iks~~wd~~~ 541 (1208)
++|++++.++ |.+|+...+.+..+.. ...|.+..|..++
T Consensus 521 ~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg 561 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 561 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC
Confidence 9999999876 8999977665555433 2345555665333
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-51 Score=517.16 Aligned_cols=480 Identities=16% Similarity=0.217 Sum_probs=390.3
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC--eEEEEecccccCEEEEEEEcCCCEEEEEECC----CeE
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD----YKI 75 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g--~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D----g~I 75 (1208)
+..|.+|...|++++|||+|++||+|+.||+|+|||+.++ .....+.+|.++|.+++|+|++++|++++.+ +.|
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence 4678999999999999999999999999999999998754 3456788999999999999999999999865 467
Q ss_pred EEEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE
Q 000961 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s 154 (1208)
++|| +++...++.+|...|.+++|+|+++ .|++++.|++|++||..+++++..+.+|...|.+++|+|++++|++++
T Consensus 132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence 7776 5677778899999999999999987 699999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000961 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (1208)
Q Consensus 155 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~ 234 (1208)
.|++|++||+.+++........ . ....+|...|.+++|+|++++|++++.|++|++||+.
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~----------~----------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDD----------S----------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCT----------T----------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEECCCCcEeeeeccc----------c----------ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999998775432210000 0 0012699999999999999999999999999999998
Q ss_pred CCceeE-----------------------------------------EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000961 235 ETKAWE-----------------------------------------VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIR 273 (1208)
Q Consensus 235 ~~~~~~-----------------------------------------~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~ 273 (1208)
+++... ...+.+|...|++++|+|+|++|++++.|++|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 765421 234568999999999999999999999999999
Q ss_pred EEeCCCCeeEEEe-ecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcc-----------------eEEecCCEEEEE
Q 000961 274 VWDVTKRTGVQTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP-----------------AFAVSGDSLFYA 335 (1208)
Q Consensus 274 vwd~~~~~~~~~~-~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~-----------------~~s~~~~~L~~~ 335 (1208)
+||+.++.....+ ..|...+.++++++++.++..+.++.+.+|+...... .+++++..++..
T Consensus 350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~ 429 (611)
T 1nr0_A 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 429 (611)
T ss_dssp EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE
Confidence 9999998877665 4678889999999998877777788888998654321 344556566666
Q ss_pred eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCce
Q 000961 336 KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLG 415 (1208)
Q Consensus 336 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i 415 (1208)
.++.+++|+ .++ .... . .. . .+.+++|+|||+.+++ ++.|+.+++|++........ ...+|...|
T Consensus 430 ~~~~v~~~~--~~~-~~~~--~-~~--~---~v~~va~spdg~~las--gs~D~~v~lwd~~~~~~~~~--~~~~h~~~v 494 (611)
T 1nr0_A 430 CYKHIAIYS--HGK-LTEV--P-IS--Y---NSSCVALSNDKQFVAV--GGQDSKVHVYKLSGASVSEV--KTIVHPAEI 494 (611)
T ss_dssp ESSEEEEEE--TTE-EEEE--E-CS--S---CEEEEEECTTSCEEEE--EETTSEEEEEEEETTEEEEE--EEEECSSCE
T ss_pred eCceEEEEe--CCc-eeee--e-cC--C---CceEEEEeCCCCEEEE--eCCCCeEEEEEccCCceeee--eccCCCCce
Confidence 888999998 333 2222 2 11 2 7899999999997755 34688999999976422111 125788899
Q ss_pred EEEEEEeCCcEEEEEcCCCEEEEEecCC-cee-ee--ecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEcCCCe-EE-E
Q 000961 416 GSAIFIARNRFAVLDKSSNQVLVKNLKN-EVV-KK--SILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRL-VL-G 486 (1208)
Q Consensus 416 ~~~~fs~d~~~l~~~~~dg~I~Iwdl~~-~~~-~~--l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~-~l-~ 486 (1208)
.+++|+|+++++++++.|++|++|++.+ ... .. +..|. .|.+++|+|+|++|+++ |++|++||+.++. .+ .
T Consensus 495 ~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~ 574 (611)
T 1nr0_A 495 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 574 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred EEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccch
Confidence 9999999999999999999999999984 332 22 23244 89999999999999885 8999999998765 22 3
Q ss_pred EEe---CCCeeEEEECCCCCEEEEEeCCe-EEEEecC
Q 000961 487 DLQ---TPFVKYVVWSNDMESVALLSKHA-IIIASKK 519 (1208)
Q Consensus 487 ~~~---~~~v~~v~ws~dg~~la~~s~~~-i~i~~~~ 519 (1208)
.+. ...|..++|+||+. |++++.++ |.+|+..
T Consensus 575 ~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 575 IKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred hhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 332 25699999999999 88888766 8888753
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.8e-50 Score=499.59 Aligned_cols=467 Identities=24% Similarity=0.384 Sum_probs=401.2
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
+++|.+|.+.|++++|+||+++||+++.|++|+|||. +++.+..+.+|.++|++++|+|++++|++++.|+.+++|+..
T Consensus 50 ~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~ 128 (577)
T 2ymu_A 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccc
Confidence 5789999999999999999999999999999999995 788999999999999999999999999999999999999964
Q ss_pred CCe----------------------------------------EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 82 MHR----------------------------------------CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 82 ~~~----------------------------------------~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
... .......|...|.++.|+|++++|++++.|+.|++||
T Consensus 129 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~ 208 (577)
T 2ymu_A 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEe
Confidence 322 1223345778899999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.... ....+.
T Consensus 209 ~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~ 259 (577)
T 2ymu_A 209 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLT 259 (577)
T ss_dssp T-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC----------------------------EEEEEC
T ss_pred C-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------------------------EEEEEe
Confidence 5 67888899999999999999999999999999999999996431 223567
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 202 ~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
+|...|++++|+|+++.+++++.|+.|++|+..... ...+.+|...|.+++|+|+++++++++.||.|++||.. +.
T Consensus 260 ~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~ 335 (577)
T 2ymu_A 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ 335 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SC
T ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE---EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CC
Confidence 899999999999999999999999999999976543 67788999999999999999999999999999999976 45
Q ss_pred eEEEeecCCCCEEEEEEeCCCCEEEEEECCC-eeeEeeCCCc-------------ceEEecCCEEEEE-eCCeEEEEEcc
Q 000961 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSG-MIVFKLERER-------------PAFAVSGDSLFYA-KDRFLRYYEFS 346 (1208)
Q Consensus 282 ~~~~~~~~~~~i~~la~sp~~~~la~g~~~g-i~v~~l~~~~-------------~~~s~~~~~L~~~-~d~~i~v~d~~ 346 (1208)
.+..+..+...+++++++|+++++++|+.++ +.+|+..... ..+++++..++++ .++.|++||..
T Consensus 336 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 5667888899999999999999999998776 5578754321 1566678888888 89999999964
Q ss_pred CCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcE
Q 000961 347 TQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRF 426 (1208)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~ 426 (1208)
++... .+.. + ...+.+++|+|+++.++++ +.++.+++|+... .....+.+|...+.+++|+|++++
T Consensus 416 -~~~~~--~~~~--~---~~~v~~~~~s~d~~~l~~~--~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 416 -GQLLQ--TLTG--H---SSSVWGVAFSPDDQTIASA--SDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp -CCEEE--EEEC--C---SSCEEEEEECTTSSEEEEE--ETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCE
T ss_pred -CCEEE--EecC--C---CCCeEEEEECCCCCEEEEE--cCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCE
Confidence 33322 2322 2 2389999999999977654 3578999999753 333466789999999999999999
Q ss_pred EEEEcCCCEEEEEecCCceeeeecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEeC--CCeeEEEECCC
Q 000961 427 AVLDKSSNQVLVKNLKNEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT--PFVKYVVWSND 501 (1208)
Q Consensus 427 l~~~~~dg~I~Iwdl~~~~~~~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~~--~~v~~v~ws~d 501 (1208)
+++++.|++|++||..++.++.+..|. .|.+++|+|+|++|+++ |+.|++||. +++.+..+.. ..|..++|+||
T Consensus 482 las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 482 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence 999999999999999899999999887 99999999999999874 899999996 6788888775 77999999999
Q ss_pred CCEEEEEeCCe-EEEEe
Q 000961 502 MESVALLSKHA-IIIAS 517 (1208)
Q Consensus 502 g~~la~~s~~~-i~i~~ 517 (1208)
|++|++++.|+ |.+|+
T Consensus 561 g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCEEEEeC
Confidence 99999999876 77775
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.1e-49 Score=494.20 Aligned_cols=466 Identities=16% Similarity=0.189 Sum_probs=380.9
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC--
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH-- 83 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~-- 83 (1208)
..+.+.+.+++|+|||++|++++ ++.|+|||+.+++....+.+|...|++++|+|+|++||+|+.|++|+|||+.++
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 45678899999999999999987 679999999999999999999999999999999999999999999999999754
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECCC----cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCC-EEEEEECCCe
Q 000961 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ----TIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSASLDQT 158 (1208)
Q Consensus 84 ~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg----~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~-~l~s~s~Dg~ 158 (1208)
....++.+|.+.|.+++|+|++++|++++.+. .|++|| +++....+.+|...|.+++|+|++. .|++++.|++
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCe
Confidence 45567889999999999999999999988753 566665 6777788899999999999999986 6999999999
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|++||..+.+ ....+.+|...|.+++|+|+|++|++|+.|+.|++||..+++.
T Consensus 172 v~lwd~~~~~---------------------------~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 172 VAIFEGPPFK---------------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 224 (611)
T ss_dssp EEEEETTTBE---------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEECCCCe---------------------------EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence 9999976532 2346789999999999999999999999999999999998876
Q ss_pred eEEEeec-------CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe-------------------------
Q 000961 239 WEVDTLR-------GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF------------------------- 286 (1208)
Q Consensus 239 ~~~~~l~-------~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~------------------------- 286 (1208)
...+. +|.+.|.+++|+|++++|++++.|++|++||+.+++.+.++
T Consensus 225 --~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 225 --TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp --EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred --eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 44552 79999999999999999999999999999999987765443
Q ss_pred ------------------ecCCCCEEEEEEeCCCCEEEEEE-CCCeeeEeeCCCcc---------------eEEecCCEE
Q 000961 287 ------------------RREHDRFWILASHPEMNLLAAGH-DSGMIVFKLERERP---------------AFAVSGDSL 332 (1208)
Q Consensus 287 ------------------~~~~~~i~~la~sp~~~~la~g~-~~gi~v~~l~~~~~---------------~~s~~~~~L 332 (1208)
.+|...|++++|+|+++++++++ ++.+.+|++..... .++ .++.+
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l 381 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-SKGDL 381 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC-TTSCE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC-CCCcE
Confidence 35777899999999999999886 45577898875432 222 23455
Q ss_pred EEE-eCCeEEEEEccCCcceeeE--eecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCccccc
Q 000961 333 FYA-KDRFLRYYEFSTQKDTQVI--PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQD 409 (1208)
Q Consensus 333 ~~~-~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~ 409 (1208)
+.+ .|+.+++|+..++...... .... ...+..++|+|+|..+++... +.+++|+.. . ....
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~~~~~~~---~~v~~~~~~-----~-~~~~- 445 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKL------SSQPLGLAVSADGDIAVAACY---KHIAIYSHG-----K-LTEV- 445 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEEC------SSCEEEEEECTTSSCEEEEES---SEEEEEETT-----E-EEEE-
T ss_pred EEEEcCCceEEeecCCccccccceeeeec------CCCCcEEEEeCCCcEEEEEeC---ceEEEEeCC-----c-eeee-
Confidence 555 8999999998875432110 0010 115678999999987776643 689999822 1 1122
Q ss_pred ccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCcee---eeecCCcceEEEEEeCCccEEEEe--CCeEEEEEcCC-Ce
Q 000961 410 AKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVV---KKSILPIAADAIFYAGTGNLLCRA--EDRVVIFDLQQ-RL 483 (1208)
Q Consensus 410 ~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~---~~l~~~~~v~~i~~s~dg~~Las~--dg~v~lwdl~~-~~ 483 (1208)
.+...+.+++|+|||+++++++.|++|++||+.+... ....+...|.+++|+|+|++|+++ |++|++||+.+ ++
T Consensus 446 ~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 446 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence 3667789999999999999999999999999985432 333333489999999999999885 89999999988 65
Q ss_pred EEEE--E--eCCCeeEEEECCCCCEEEEEeCCe-EEEEecCc
Q 000961 484 VLGD--L--QTPFVKYVVWSNDMESVALLSKHA-IIIASKKL 520 (1208)
Q Consensus 484 ~l~~--~--~~~~v~~v~ws~dg~~la~~s~~~-i~i~~~~~ 520 (1208)
.+.. . ....|.+++|+|||++||+++.|+ |.+|+.+.
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 5443 1 226799999999999999999877 99998765
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-48 Score=531.13 Aligned_cols=501 Identities=15% Similarity=0.235 Sum_probs=408.8
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
..+.+|.+.|++++|||+|++|++|+.||+|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~--d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
++++.++.+|...|.+++|+| ++.++++++.|+.|++||+.+++++..+.+|.+.|.+++|+|+++++++++.||+|+
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence 999999999999999999999 556899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCccccccCCC-----------------cceeeccccc----------cccccccc-eEEEEEeccCCCeEEEEE
Q 000961 161 VWDIGALRKKTVSPAD-----------------DILRLSQMNT----------DLFGGVDA-VVKYVLEGHDRGVNWAAF 212 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~-----------------~~~~~~~~~~----------~~~~~~~~-~~~~~~~~h~~~V~~l~~ 212 (1208)
+||+.+.+........ ..+.....+. .++..... .......+|...|.+++|
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence 9999776433221100 0001111111 11111111 222234488999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--------------
Q 000961 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT-------------- 278 (1208)
Q Consensus 213 sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~-------------- 278 (1208)
+|+++++++++.||.|++|++.++.. +..+.+|...|++++|+|+++++++++.||.|++||+.
T Consensus 849 sp~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 849 SPYDHLAVIALSQYCVELWNIDSRLK--VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp CSSTTEEEEECSSSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEcCCCce--eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 99999999999999999999999876 77888999999999999999999999999888888743
Q ss_pred -----------------------------------------------------------------CCeeEEEeecCCCCE
Q 000961 279 -----------------------------------------------------------------KRTGVQTFRREHDRF 293 (1208)
Q Consensus 279 -----------------------------------------------------------------~~~~~~~~~~~~~~i 293 (1208)
+++....+..|...|
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 233334445566778
Q ss_pred EEEEEeCCCCEEEEEECC-CeeeEeeCCCcc-------------eEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecC
Q 000961 294 WILASHPEMNLLAAGHDS-GMIVFKLERERP-------------AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRR 358 (1208)
Q Consensus 294 ~~la~sp~~~~la~g~~~-gi~v~~l~~~~~-------------~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~ 358 (1208)
.+++|+|+++++++++.+ .+.+|++..... .+.. +..++++ .++.+++||+.+++....+..
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-- 1083 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVWNVITGRIERDFTC-- 1083 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECS-SSEEEEEESSSEEEEEETTTTCCCEEEEC--
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcC-CCcEEEEECCCcEEEEECCCCceeEEEcc--
Confidence 888888888888877644 466887765432 2222 3345555 889999999988876544432
Q ss_pred CCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEE
Q 000961 359 PGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLV 438 (1208)
Q Consensus 359 ~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~I 438 (1208)
+ ...+.+++|+|+++.+++ ++.++.+++|++.... ....+.+|.+.|.+++|+|+++++++++.||+|++
T Consensus 1084 --~---~~~v~~~~~s~d~~~l~s--~s~d~~v~iwd~~~~~---~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1084 --H---QGTVLSCAISSDATKFSS--TSADKTAKIWSFDLLS---PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153 (1249)
T ss_dssp --C---SSCCCCEEECSSSSSCEE--ECCSSCCCEECSSSSS---CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCE
T ss_pred --c---CCcEEEEEECCCCCEEEE--EcCCCcEEEEECCCcc---eeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 2 338999999999997755 4467899999987643 33357789999999999999999999999999999
Q ss_pred EecC-Cceeeee---------cCCc-ceEEEEEeCCccEEEEeCCeEEEEEcCCCeEEEEEeC--CCeeEEEECCCCCEE
Q 000961 439 KNLK-NEVVKKS---------ILPI-AADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESV 505 (1208)
Q Consensus 439 wdl~-~~~~~~l---------~~~~-~v~~i~~s~dg~~Las~dg~v~lwdl~~~~~l~~~~~--~~v~~v~ws~dg~~l 505 (1208)
||+. +..+..+ ..+. .|.+++|+|+|++|++++|.|++||+.+++.+..+.. ..|..+.|+|||.++
T Consensus 1154 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l 1233 (1249)
T 3sfz_A 1154 WNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTY 1233 (1249)
T ss_dssp EESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCE
T ss_pred EECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCCceeeeeeccCCcccEEEECCCCCEE
Confidence 9998 5554444 2333 8999999999999999999999999999998887764 668999999999999
Q ss_pred EEEeCCe-EEEEec
Q 000961 506 ALLSKHA-IIIASK 518 (1208)
Q Consensus 506 a~~s~~~-i~i~~~ 518 (1208)
++++.++ +++|+.
T Consensus 1234 ~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1234 VTVDNLGILYILQV 1247 (1249)
T ss_dssp EEECTTCCEEEECC
T ss_pred EEecCCcEEEEEee
Confidence 9999886 777764
No 9
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.1e-47 Score=491.91 Aligned_cols=647 Identities=17% Similarity=0.221 Sum_probs=453.8
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
+..+.+.+|.+.|++++|||++++|++|+.||.|+|||+.+++.+.++.+|...|++++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
+.+++.+..+.+|...|++++|+|++++|++++.||+|++||+.+.. .....+.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--------------------------~~~~~~~ 137 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--------------------------ALEQTFE 137 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS--------------------------EEEEEEE
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc--------------------------eEEEEEc
Confidence 99999999999999999999999999999999999999999986532 1334677
Q ss_pred ccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeecC-cCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeC
Q 000961 202 GHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHA--KQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 202 ~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~-h~~~V~~l~~sp--~g~~l~sgs~dg~I~vwd~ 277 (1208)
+|...|.+++|+| ++..|++++.||.|++||+.++.. ...+.. +...+.+++|+| ++.++++++.||.|++||+
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 8999999999999 889999999999999999988765 344444 448899999999 9999999999999999999
Q ss_pred CCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeec
Q 000961 278 TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (1208)
Q Consensus 278 ~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~ 357 (1208)
.+++.+..+..|...+.+++|+|+++++++++. ++.|++||+.+++........
T Consensus 216 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------------dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE--------------------------DGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp TTTEEEEEEECCSSCEEEEEECSSSSEEEEEET--------------------------TSCEEEEETTTCSEEEEECCS
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC--------------------------CCeEEEEECCCCcEEEEeecC
Confidence 999999999999999999999999999999884 677889998887664443221
Q ss_pred CCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCC-------C--------------------------
Q 000961 358 RPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR-------G-------------------------- 404 (1208)
Q Consensus 358 ~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~-------~-------------------------- 404 (1208)
...+.+++|+|++..++++.+.+ +.+.+|++....... .
T Consensus 270 -------~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 270 -------LERSWCIATHPTGRKNYIASGFD-NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp -------SSSEEEEEECTTCGGGEEEEEET-TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred -------CCcEEEEEEccCCCceEEEEEeC-CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence 22889999999987543333433 456677754321100 0
Q ss_pred -------cccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEEEEe--CCeEE
Q 000961 405 -------DSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCRA--EDRVV 475 (1208)
Q Consensus 405 -------~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las~--dg~v~ 475 (1208)
......+...+.+++|+|+|+++++++ ++.+.+|++....... ...+.++.|+|+|++++++ ++.|+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~---~~~i~~~~~spdg~~la~~~~~g~v~ 417 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA---FGKCQDFVWGPDSNSYALIDETGQIK 417 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE---EEECSEEEECTTSSCEEEECTTCCEE
T ss_pred CccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC---CCceEEEEEeCCCCeEEEEeCCCcEE
Confidence 001123344678999999999999998 8999999987433322 2367899999999999875 78999
Q ss_pred EEEcCCCeEEEEEeCCCeeEEEECCCC---CEEEE-EeCCeEEEEecCcccee-eeecceeeeeeEEecCCeEEEec---
Q 000961 476 IFDLQQRLVLGDLQTPFVKYVVWSNDM---ESVAL-LSKHAIIIASKKLVHQC-TLHETIRVKSGAWDDNGVFIYTT--- 547 (1208)
Q Consensus 476 lwdl~~~~~l~~~~~~~v~~v~ws~dg---~~la~-~s~~~i~i~~~~~~~~~-~~~e~~~iks~~wd~~~~~iy~t--- 547 (1208)
+|+.-.+ ....+..+.|+||| .++++ ..+..+.+|+....... .+.... ....|+.++..+...
T Consensus 418 l~~~~~~------~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--~~v~~s~dg~~la~~~~~ 489 (814)
T 3mkq_A 418 YYKNFKE------VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNA--KDVIWSDNGELVMIVNTN 489 (814)
T ss_dssp EEETTEE------CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCE--EEEEECTTSSEEEEEECC
T ss_pred EEECCCC------ccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCC--CEEEEcCCCCEEEEEEcC
Confidence 9974322 12467888999998 35555 55566999997654433 333222 278898665544443
Q ss_pred ---CCeeeeEec---------------------CCceeEEEeccc---------cEEEEEEeCCEEEEEec---------
Q 000961 548 ---LNHIKYCLP---------------------NGDSGIIRTLDV---------PIYITKVSGNTIFCLDR--------- 585 (1208)
Q Consensus 548 ---~~~i~y~l~---------------------~g~~g~i~~l~~---------~~~l~~~~~~~l~~l~r--------- 585 (1208)
...-.|.+. +.....+..+.. ..++.....+++.++..
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~ 569 (814)
T 3mkq_A 490 SNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHY 569 (814)
T ss_dssp CSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEEC
T ss_pred cccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEEC
Confidence 222222220 001111111111 11111111122221110
Q ss_pred CCceEEEEcChhhHHHHHhhc-ccccc----cchH--HHHHHHhCCChhhhhc-cccCcc-----h-hhHHHHhcCCHHH
Q 000961 586 DGKNRAIVIDATEYDHVMSMI-RNSQL----CGQA--MIAYLQQKGFPEVALH-FVKDER-----T-RFNLALESGNIQI 651 (1208)
Q Consensus 586 ~~~~~~~~ld~~e~~~~l~~i-~~~~~----~~~~--i~~yl~~~g~~e~Al~-~~~~~~-----~-~f~lal~~g~~~~ 651 (1208)
+..+....+.+.+ ..+-.+ +.... +... ........+..+.|++ ++..-. . .-.+..+.|.++.
T Consensus 570 ~~~~~~~~~~~~~--~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~ 647 (814)
T 3mkq_A 570 TKEMYLLGYLARD--NKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEE 647 (814)
T ss_dssp SSCCEEEEEEGGG--TEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccEEEEEEEecC--CEEEEEcCCCCEEEEEECcHHHHHhHHHHhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHH
Confidence 0111111100000 000000 00000 0001 1111223444555555 441111 1 1133444566666
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHcCChhHH----------------HHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHH
Q 000961 652 AVASAKEIDEKDHWYRLGVEALRQGNAGIV----------------EYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAE 715 (1208)
Q Consensus 652 A~~~a~~~~~~~~w~~La~~al~~g~~~~A----------------e~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~ 715 (1208)
|++.++ ++ ..-.+.|+..|+++.| .+.+.+.++++.+..+|...||.+++..+..+..
T Consensus 648 a~~~~~---~~---~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~ 721 (814)
T 3mkq_A 648 ALNISP---DQ---DQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN 721 (814)
T ss_dssp HHHHCC---CH---HHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred heecCC---Cc---chheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC
Confidence 665532 22 1113345666666666 4445557889999999999999999988866422
Q ss_pred HcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcC
Q 000961 716 VKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELG 770 (1208)
Q Consensus 716 ~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~ 770 (1208)
........++.+...|+++.|..+|.++|++++|++|++..+.|++|.+|+++.+
T Consensus 722 ~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 722 NKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 2222345667888999999999999999999999999999999999999999865
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.3e-45 Score=460.45 Aligned_cols=466 Identities=14% Similarity=0.213 Sum_probs=383.7
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC----eEEEEecccccC-EEEEEEEc--CCCEEEEEECCCeEEEE
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEHDGP-VRGVHFHK--SQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g----~~i~~l~~h~~~-V~~l~fsp--~~~~Lasgs~Dg~I~vW 78 (1208)
..|.+.|.+++|||+|++|++++ ++.|+|||+.++ +....+.+|.+. |++++|+| ++++|++|+.||.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 46889999999999999999997 889999999999 899999999999 99999999 99999999999999999
Q ss_pred ECCCC--------eEEEEEccCCCCEEEEEEcCCCCEEEEEECC----CcEEEEECCCCeEEEEEecCCCCEEEEEEeeC
Q 000961 79 NYKMH--------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDD----QTIRIWNWQSRTCISVLTGHNHYVMCASFHPK 146 (1208)
Q Consensus 79 d~~~~--------~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D----g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~ 146 (1208)
|+.++ +....+..|...|.+++|+|++++|++++.+ +.|++|| .++.+..+.+|...|.+++|+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence 99754 7778888999999999999999999999987 6777777 67888999999999999999999
Q ss_pred CC-EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC---CeEEEEEcCC-CCEEEE
Q 000961 147 ED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR---GVNWAAFHPT-LPLIVS 221 (1208)
Q Consensus 147 ~~-~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~-g~~L~s 221 (1208)
++ .+++++.|+.|++||+.+.+ ....+.+|.. .|.+++|+|+ +++|++
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 224 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFK---------------------------FSASDRTHHKQGSFVRDVEFSPDSGEFVIT 224 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBE---------------------------EEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred CCcEEEEEeCCCcEEEEeCCCcc---------------------------eeeeecccCCCCceEEEEEECCCCCCEEEE
Confidence 97 89999999999999987643 2335677888 9999999999 999999
Q ss_pred EeCCCcEEEEECCCCceeEEEee-c---CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC----CCCE
Q 000961 222 GADDRQVKLWRMNETKAWEVDTL-R---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE----HDRF 293 (1208)
Q Consensus 222 gs~dg~I~iwd~~~~~~~~~~~l-~---~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~----~~~i 293 (1208)
++.||.|++||+.+++. +..+ . .|...|.++.|+ ++++|++++.||.|++||+.+++.+..+..+ ...+
T Consensus 225 ~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 225 VGSDRKISCFDGKSGEF--LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp EETTCCEEEEETTTCCE--EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred EeCCCeEEEEECCCCCE--eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence 99999999999999886 6666 5 899999999999 9999999999999999999999999888866 3567
Q ss_pred EEEEEeCCCCEEEEEE-CCCeeeEeeCCCcceEEe---------------------------------------------
Q 000961 294 WILASHPEMNLLAAGH-DSGMIVFKLERERPAFAV--------------------------------------------- 327 (1208)
Q Consensus 294 ~~la~sp~~~~la~g~-~~gi~v~~l~~~~~~~s~--------------------------------------------- 327 (1208)
.++.++ +++++++++ ++.+.+|++....+....
T Consensus 302 ~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 302 VGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp EEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred eEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 778876 677777665 455667776543321111
Q ss_pred -cCCEEEEE-eCCeEEEEEccCCc----------------------------------ceeeEeecCCCCCCCCcCCeEE
Q 000961 328 -SGDSLFYA-KDRFLRYYEFSTQK----------------------------------DTQVIPIRRPGSTSLNQSPRTL 371 (1208)
Q Consensus 328 -~~~~L~~~-~d~~i~v~d~~~~~----------------------------------~~~~~~~~~~~~~~~~~~i~~l 371 (1208)
.++.++++ .++.+++|++.+++ ...... + ...+.++
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~ 452 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-----L---NSPGSAV 452 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-----C---SSCEEEE
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-----c---CCCceEE
Confidence 13444444 66666666665322 111111 1 2267788
Q ss_pred EEcCCCCEEEEEEecC-CCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-Cceeeee
Q 000961 372 SYSPTENAVLICSDVD-GGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKS 449 (1208)
Q Consensus 372 ~~spdg~~llv~~~~~-~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~l 449 (1208)
+|+ ++.+++. .. ++.+++|++....... ..+..|...+.+++|+|+++++++++.|+.|++||+. ++.+..+
T Consensus 453 ~~~--~~~l~~~--~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 526 (615)
T 1pgu_A 453 SLS--QNYVAVG--LEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 526 (615)
T ss_dssp EEC--SSEEEEE--ETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC
T ss_pred EEc--CCEEEEe--ecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEe
Confidence 888 6655442 34 7899999988643211 2466788999999999999999999999999999998 6677777
Q ss_pred cC-Cc-ceEEEEEeC----------CccEEEEe--CCeEEEEEcCCC-eEEEEEeC--CCeeEEEECCCCCEEEEEeCCe
Q 000961 450 IL-PI-AADAIFYAG----------TGNLLCRA--EDRVVIFDLQQR-LVLGDLQT--PFVKYVVWSNDMESVALLSKHA 512 (1208)
Q Consensus 450 ~~-~~-~v~~i~~s~----------dg~~Las~--dg~v~lwdl~~~-~~l~~~~~--~~v~~v~ws~dg~~la~~s~~~ 512 (1208)
.. |. .|.++.|+| ++++|+++ |+.|++||+.++ +.+..+.. ..|..+.|+||+. |++++.++
T Consensus 527 ~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~ 605 (615)
T 1pgu_A 527 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA 605 (615)
T ss_dssp SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCc
Confidence 65 55 999999999 99999885 899999999998 77777664 6799999999999 88888877
Q ss_pred -EEEEecCc
Q 000961 513 -IIIASKKL 520 (1208)
Q Consensus 513 -i~i~~~~~ 520 (1208)
+.+|+.+.
T Consensus 606 ~v~iw~~~~ 614 (615)
T 1pgu_A 606 CIKRWNVVL 614 (615)
T ss_dssp CEEEEEEC-
T ss_pred eEEEEeeec
Confidence 88888654
No 11
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-43 Score=453.44 Aligned_cols=570 Identities=12% Similarity=0.109 Sum_probs=389.3
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1208)
...+|.+.|++++|+|++++||+|+.||+|+|||..+++....+ .|..+|++++|+| +++|++++.|++|++||+.++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34689999999999999999999999999999999888776665 4889999999999 889999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE-----------EEEecCCCCEEEEEEeeC-CCEEE
Q 000961 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI-----------SVLTGHNHYVMCASFHPK-EDLVV 151 (1208)
Q Consensus 84 ~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i-----------~~l~~h~~~V~~l~~~p~-~~~l~ 151 (1208)
+++.++. |...|++++|+|++++|++|+.||+|++||+.++++. ..+.+|.+.|++++|+|+ +..++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 9998886 7789999999999999999999999999999988764 223578999999999996 47899
Q ss_pred EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 000961 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1208)
Q Consensus 152 s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iw 231 (1208)
+|+.||.| +||+++.+.......... .....+.... .....|...|++++|+|+|.+|++|+.||.|++|
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~------~g~~~~~~~~---~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELP------PFAPGGDFSE---KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBC------TTCCCSTTCC---CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccC------CcCCCccccc---ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 99999999 999987654322110000 0000000000 0123456789999999999999999999999999
Q ss_pred ECCCCceeEEEee---cC-------------cCCCeEEEEEcc----CC-CEEEEEeCC-----CcEEEEeCC-------
Q 000961 232 RMNETKAWEVDTL---RG-------------HMNNVSCVMFHA----KQ-DIIVSNSED-----KSIRVWDVT------- 278 (1208)
Q Consensus 232 d~~~~~~~~~~~l---~~-------------h~~~V~~l~~sp----~g-~~l~sgs~d-----g~I~vwd~~------- 278 (1208)
|+.+++......+ .. |...|++++|++ ++ .++++|+.| +.+.+|++.
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccc
Confidence 9998876332222 12 345799999964 43 567777665 378899842
Q ss_pred -----------CCeeEEEee-cCCCCEEEEEEeC----------CCCEEEEEE-CCCeeeEeeCCCcceEE---------
Q 000961 279 -----------KRTGVQTFR-REHDRFWILASHP----------EMNLLAAGH-DSGMIVFKLERERPAFA--------- 326 (1208)
Q Consensus 279 -----------~~~~~~~~~-~~~~~i~~la~sp----------~~~~la~g~-~~gi~v~~l~~~~~~~s--------- 326 (1208)
+.+....+. .+...+..+.+.+ +...+++++ ++.+.+|++..+.+...
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred cchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 222333443 3456788887765 222444444 45577777644322111
Q ss_pred ecCCEEE-EE-eCCeEEEEEccCCc-ceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCC
Q 000961 327 VSGDSLF-YA-KDRFLRYYEFSTQK-DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR 403 (1208)
Q Consensus 327 ~~~~~L~-~~-~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~ 403 (1208)
.....+. .. .+....+|+..... ......+ .++ ...+.+++|+|+++.++. ++.|++|++|++.......
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l--~G~---~~~v~sv~~spdg~~laS--gs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLL--KGG---VRTKRQKLPAEYGTAFIT--GHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSC--CCS---BCCCCCCCCCSEEEEEEE--EETTSEEEEEESSCCTTTT
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcc--cCC---cCCCCcccccccCcEEEE--ecCCCcEEEEECCCccccC
Confidence 0000000 00 11111223221100 0000111 222 226778899999986643 4468999999998753211
Q ss_pred Ccccc---------cccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCc------------------------------
Q 000961 404 GDSVQ---------DAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNE------------------------------ 444 (1208)
Q Consensus 404 ~~~~~---------~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~------------------------------ 444 (1208)
.. .+ .+|...|.+++|+||++++++++.|++|+||++.+.
T Consensus 472 ~~-~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 472 NA-SFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp TB-CEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred Cc-eEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 10 11 278889999999999999999999999999999732
Q ss_pred ----------------eeeeecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEe------C--CCeeEEE
Q 000961 445 ----------------VVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQ------T--PFVKYVV 497 (1208)
Q Consensus 445 ----------------~~~~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~------~--~~v~~v~ 497 (1208)
++..+..|. .|.+++||||| +|+++ |++|+|||+.++..+.... . ..|.+|+
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~ 629 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIE 629 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEE
T ss_pred ccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEE
Confidence 245666666 99999999999 88774 8999999999888765311 1 4599999
Q ss_pred EC-----CCC---CEEEEEeCCe-EEEEec---Ccc-ceeeeecc------eeeeee-EEe-------------------
Q 000961 498 WS-----NDM---ESVALLSKHA-IIIASK---KLV-HQCTLHET------IRVKSG-AWD------------------- 538 (1208)
Q Consensus 498 ws-----~dg---~~la~~s~~~-i~i~~~---~~~-~~~~~~e~------~~iks~-~wd------------------- 538 (1208)
|+ ||| .+|++++.++ |.+|+. ... ....+... ..|.+. .++
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 99 886 8999999876 899986 222 12222111 112222 243
Q ss_pred ---cCCeEEEecCCeeeeE-ecCCceeEEEeccccEEEE-------------EEeCCEEEEEecCCceEEEEcCh
Q 000961 539 ---DNGVFIYTTLNHIKYC-LPNGDSGIIRTLDVPIYIT-------------KVSGNTIFCLDRDGKNRAIVIDA 596 (1208)
Q Consensus 539 ---~~~~~iy~t~~~i~y~-l~~g~~g~i~~l~~~~~l~-------------~~~~~~l~~l~r~~~~~~~~ld~ 596 (1208)
.++.++.++...++.+ +.++.. .-+.++.+.... ...+..|.++..+|.++.+.+..
T Consensus 710 ~~~~~~~~l~~~~~~ir~~~~~~~k~-~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 710 GLCIPGIVLITGFDDIRLITLGKSKS-THKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPD 783 (902)
T ss_dssp TCCCCEEEEEECSSEEEEECTTCCCE-EEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTT
T ss_pred CCCCCeEEEEEeccceEEEeCccccc-eeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcc
Confidence 2344555565666554 223322 222233332222 23467899999999999998843
No 12
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-42 Score=434.36 Aligned_cols=434 Identities=13% Similarity=0.212 Sum_probs=359.3
Q ss_pred ceEeecCCCC-EEEEEEeC--CCCEEEEEecCCeEEEEECCCC--------eEEEEecccccCEEEEEEEcCCCEEEEEE
Q 000961 2 LTKFETKSNR-VKGLSFHS--KRPWILASLHSGVIQLWDYRMG--------TLIDRFDEHDGPVRGVHFHKSQPLFVSGG 70 (1208)
Q Consensus 2 l~~l~~h~~~-V~~lafsp--dg~~Lasg~~dg~I~iWd~~~g--------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs 70 (1208)
+..+.+|.+. |++++|+| ++++|++++.||.|+|||+.++ +.+..+..|..+|++++|+|++++|++++
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence 4678999999 99999999 9999999999999999999755 77788889999999999999999999999
Q ss_pred CC----CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCC---CEEEEE
Q 000961 71 DD----YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLTGHNH---YVMCAS 142 (1208)
Q Consensus 71 ~D----g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~---~V~~l~ 142 (1208)
.+ +.|.+|| +++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+.+|.. .|.+++
T Consensus 136 ~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 136 EGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp CCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred cCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence 87 6888888 6788899999999999999999998 899999999999999999999999999999 999999
Q ss_pred EeeC-CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE-e---ccCCCeEEEEEcCCCC
Q 000961 143 FHPK-EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL-E---GHDRGVNWAAFHPTLP 217 (1208)
Q Consensus 143 ~~p~-~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~V~~l~~sp~g~ 217 (1208)
|+|+ +++|++++.||.|++||+.+.+.. ..+ . +|...|.+++|+ +++
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------------~~~~~~~~~~~~~v~~~~~~-~~~ 265 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGEFL---------------------------KYIEDDQEPVQGGIFALSWL-DSQ 265 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEE---------------------------EECCBTTBCCCSCEEEEEES-SSS
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCEe---------------------------EEecccccccCCceEEEEEc-CCC
Confidence 9999 999999999999999999775432 233 4 789999999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEeecCc----CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCE
Q 000961 218 LIVSGADDRQVKLWRMNETKAWEVDTLRGH----MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF 293 (1208)
Q Consensus 218 ~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h----~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i 293 (1208)
+|++++.||.|++||+.+++. +..+..+ ...+.++.|+ +++++++++.||.|++||+.+++.+..+..|...+
T Consensus 266 ~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTSKC--VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp EEEEEETTSEEEEEETTTTEE--EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred EEEEEcCCCcEEEEECCCCcE--EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 999999999999999998886 5555555 4678888885 89999999999999999999988888887776666
Q ss_pred EEEEEeCC---------------------------------CCEEEEEE-CCCeeeEeeCCCc-----------------
Q 000961 294 WILASHPE---------------------------------MNLLAAGH-DSGMIVFKLERER----------------- 322 (1208)
Q Consensus 294 ~~la~sp~---------------------------------~~~la~g~-~~gi~v~~l~~~~----------------- 322 (1208)
.+++| |+ +..+++++ ++.+.+|++....
T Consensus 343 ~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~ 421 (615)
T 1pgu_A 343 TALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 421 (615)
T ss_dssp EEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEE
T ss_pred EEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEE
Confidence 66655 43 44444443 3334555543211
Q ss_pred -----------------c-----------eEEecCCEEEEE-e-CCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEE
Q 000961 323 -----------------P-----------AFAVSGDSLFYA-K-DRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLS 372 (1208)
Q Consensus 323 -----------------~-----------~~s~~~~~L~~~-~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 372 (1208)
. .+...++.++++ . ++.+++||+.+++... ..+. ++ ...+++++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~--~~---~~~v~~~~ 495 (615)
T 1pgu_A 422 VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKT--PL---RAKPSYIS 495 (615)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSS--CC---SSCEEEEE
T ss_pred EEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccC--Cc---cCceEEEE
Confidence 0 112226777777 5 9999999999865432 2222 23 33899999
Q ss_pred EcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccc-cCCceEEEEEEe----------CCcEEEEEcCCCEEEEEec
Q 000961 373 YSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDA-KKGLGGSAIFIA----------RNRFAVLDKSSNQVLVKNL 441 (1208)
Q Consensus 373 ~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~-~~~~i~~~~fs~----------d~~~l~~~~~dg~I~Iwdl 441 (1208)
|+|++++++++ +.++.+++|++..... ...+.+ |...+++++|+| +++++++++.|++|++||+
T Consensus 496 ~s~~g~~l~~~--~~dg~i~iw~~~~~~~---~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 496 ISPSETYIAAG--DVMGKILLYDLQSREV---KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp ECTTSSEEEEE--ETTSCEEEEETTTTEE---EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred ECCCCCEEEEc--CCCCeEEEeeCCCCcc---eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 99999977654 3578999999976432 223455 889999999999 9999999999999999999
Q ss_pred CC--ceeeeecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEcCC
Q 000961 442 KN--EVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQ 481 (1208)
Q Consensus 442 ~~--~~~~~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl~~ 481 (1208)
.. ..+..+..|. .|.++.|+|+|+ |+++ |+.|++||++.
T Consensus 571 ~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 571 KRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 94 5777888776 999999999999 7664 89999999865
No 13
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-42 Score=472.18 Aligned_cols=507 Identities=15% Similarity=0.212 Sum_probs=409.6
Q ss_pred EEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s 124 (1208)
..+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+.++.+|.+.|.+++|+|++++|++++.||+|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEEee--CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 125 RTCISVLTGHNHYVMCASFHP--KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 125 ~~~i~~l~~h~~~V~~l~~~p--~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
++++..+.+|...|.+++|+| ++.++++++.||.|++||+.+.+. ...+.+
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---------------------------~~~~~~ 741 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC---------------------------RNTMFG 741 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE---------------------------EEEECC
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch---------------------------hheecC
Confidence 999999999999999999999 456899999999999999987542 336678
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-----------------------------------------
Q 000961 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV----------------------------------------- 241 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~----------------------------------------- 241 (1208)
|...|++++|+|+++++++++.||.|++||+.++.....
T Consensus 742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence 999999999999999999999999999999876543111
Q ss_pred ------------EeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 242 ------------DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 242 ------------~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
....+|...|.+++|+|++.++++++.||.|++||+.++..+..+..|...|++++|+|+++.+++++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence 01127888999999999999999999999999999999999999999999999999999999998887
Q ss_pred CC-CeeeEeeCCC---------------------------------------------------cceEEecCCEEEEE-e
Q 000961 310 DS-GMIVFKLERE---------------------------------------------------RPAFAVSGDSLFYA-K 336 (1208)
Q Consensus 310 ~~-gi~v~~l~~~---------------------------------------------------~~~~s~~~~~L~~~-~ 336 (1208)
.+ .+.+|++... ...++++++.++++ .
T Consensus 902 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~ 981 (1249)
T 3sfz_A 902 DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 981 (1249)
T ss_dssp TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEET
T ss_pred CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcC
Confidence 55 5778875421 11456678888888 8
Q ss_pred CCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceE
Q 000961 337 DRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGG 416 (1208)
Q Consensus 337 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~ 416 (1208)
++.|++|++.+++..... . +| ...|++++|+|+++.++. ++.++.+++|++...... ....|...+.
T Consensus 982 ~g~i~i~d~~~~~~~~~~--~--~h---~~~v~~l~~s~dg~~l~s--~~~dg~i~vwd~~~~~~~----~~~~~~~~v~ 1048 (1249)
T 3sfz_A 982 DGAIKIIELPNNRVFSSG--V--GH---KKAVRHIQFTADGKTLIS--SSEDSVIQVWNWQTGDYV----FLQAHQETVK 1048 (1249)
T ss_dssp TSCCEEEETTTTSCEEEC--C--CC---SSCCCCEEECSSSSCEEE--ECSSSBEEEEETTTTEEE----CCBCCSSCEE
T ss_pred CCCEEEEEcCCCceeeec--c--cC---CCceEEEEECCCCCEEEE--EcCCCEEEEEECCCCceE----EEecCCCcEE
Confidence 999999999988764432 2 33 338999999999997755 346789999999865322 3457888999
Q ss_pred EEEEEeCCcEEEEEcCCCEEEEEecC-CceeeeecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEcCCCeEEEEEeC--
Q 000961 417 SAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDLQQRLVLGDLQT-- 490 (1208)
Q Consensus 417 ~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl~~~~~l~~~~~-- 490 (1208)
++.|+++++++ +++.|++|++||+. +.....+..|. .|.+++|+|+|++++++ |+.|++||+.+++.+..+..
T Consensus 1049 ~~~~~~~~~l~-~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~ 1127 (1249)
T 3sfz_A 1049 DFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHN 1127 (1249)
T ss_dssp EEEECSSSEEE-EEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCS
T ss_pred EEEEcCCCcEE-EEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCC
Confidence 99999987755 55559999999998 66777788776 89999999999999875 89999999999988777765
Q ss_pred CCeeEEEECCCCCEEEEEeCCe-EEEEecCccceeeee-----------cceeeeeeEEecCCeEEEecCCeeeeE-ecC
Q 000961 491 PFVKYVVWSNDMESVALLSKHA-IIIASKKLVHQCTLH-----------ETIRVKSGAWDDNGVFIYTTLNHIKYC-LPN 557 (1208)
Q Consensus 491 ~~v~~v~ws~dg~~la~~s~~~-i~i~~~~~~~~~~~~-----------e~~~iks~~wd~~~~~iy~t~~~i~y~-l~~ 557 (1208)
..|..++|+|||+++++++.++ |.+|+.......... -...|.+..|..++.++.+....++.. +..
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVAT 1207 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSS
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCC
Confidence 6799999999999999999876 899987654332211 123467788886666666554444433 222
Q ss_pred CceeEEEec---cccEEEEEE--eCCEEEEEecCCceEEEEc
Q 000961 558 GDSGIIRTL---DVPIYITKV--SGNTIFCLDRDGKNRAIVI 594 (1208)
Q Consensus 558 g~~g~i~~l---~~~~~l~~~--~~~~l~~l~r~~~~~~~~l 594 (1208)
|.. +..+ ..++.-+.+ .+..++..+.+|.++.+.+
T Consensus 1208 g~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1208 GDS--SQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CBC--CCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred Cce--eeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 221 1111 112222333 4567888888888877654
No 14
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-41 Score=440.01 Aligned_cols=506 Identities=11% Similarity=0.085 Sum_probs=357.2
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1208)
.|...|++++|+| |++|++++.|++|+|||+.+++.+..+. |.+.|++++|+|++++|++|+.||+|++||+.++++.
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4788999999999 8899999999999999999999998885 7789999999999999999999999999999988764
Q ss_pred -----------EEEccCCCCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEecC------------------CC
Q 000961 87 -----------FTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGH------------------NH 136 (1208)
Q Consensus 87 -----------~~l~~h~~~I~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h------------------~~ 136 (1208)
..+.+|.+.|.+++|+|+ +..+++++.||+| +||+++++++..+..| ..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 233679999999999996 4689999999999 9999999999888766 57
Q ss_pred CEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccc--------cC-----------CC-cceeecc----c--c-cccc
Q 000961 137 YVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV--------SP-----------AD-DILRLSQ----M--N-TDLF 189 (1208)
Q Consensus 137 ~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~--------~~-----------~~-~~~~~~~----~--~-~~~~ 189 (1208)
.|++++|+|+|++|++++.||+|++||+++++.... .. .. ....+.. . . ..+.
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 799999999999999999999999999987654321 00 00 1111111 0 0 1111
Q ss_pred -cccc------ceEEE---------------------------EEe-ccCCCeEEEEEcC----------CCCEEEEEeC
Q 000961 190 -GGVD------AVVKY---------------------------VLE-GHDRGVNWAAFHP----------TLPLIVSGAD 224 (1208)
Q Consensus 190 -~~~~------~~~~~---------------------------~~~-~h~~~V~~l~~sp----------~g~~L~sgs~ 224 (1208)
++.+ ..... .+. .+...|..+.+.+ +...+++++.
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence 1111 11111 111 3566788888765 2347899999
Q ss_pred CCcEEEEECCCCceeEE-----E----------------------------------eecCcCCCeEEEEEccCCCEEEE
Q 000961 225 DRQVKLWRMNETKAWEV-----D----------------------------------TLRGHMNNVSCVMFHAKQDIIVS 265 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~-----~----------------------------------~l~~h~~~V~~l~~sp~g~~l~s 265 (1208)
||.|++|++.++..... . .+.+|...+.+++|+|++++|++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 99999999876532100 0 12345555556667899999999
Q ss_pred EeCCCcEEEEeCCCCeeE----EEe--e-----cCCCCEEEEEEeCCCCEEEEEECCC-eeeEeeCCCcceE----EecC
Q 000961 266 NSEDKSIRVWDVTKRTGV----QTF--R-----REHDRFWILASHPEMNLLAAGHDSG-MIVFKLERERPAF----AVSG 329 (1208)
Q Consensus 266 gs~dg~I~vwd~~~~~~~----~~~--~-----~~~~~i~~la~sp~~~~la~g~~~g-i~v~~l~~~~~~~----s~~~ 329 (1208)
|+.|++|++||+.++... ... . .|...|++++|+|++++||+|+.++ +++|++......- ....
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~ 532 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESG 532 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCc
Confidence 999999999999877421 111 1 5778899999999999999998533 4455554331100 0000
Q ss_pred C-EEEE-----E-eCCeEEEEEccCCc-------ceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 330 D-SLFY-----A-KDRFLRYYEFSTQK-------DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 330 ~-~L~~-----~-~d~~i~v~d~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
. .+-+ . .... ..++.... ..++..+.. | ...|++++||||| ++++ ++.|++|++|+
T Consensus 533 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~l~~--h---~~~V~svafSpdG-~lAs--gs~D~tv~lwd 602 (902)
T 2oaj_A 533 DLEMNFRRFSLNNTNGV--LVDVRDRAPTGVRQGFMPSTAVHA--N---KGKTSAINNSNIG-FVGI--AYAAGSLMLID 602 (902)
T ss_dssp -----CCSCCGGGSSCS--EEECGGGCCTTCSEEEEEEEEECC--C---SCSEEEEEECBTS-EEEE--EETTSEEEEEE
T ss_pred ccceeeeeccccCCccc--cccccccCCCCCCCccceeEEEEc--C---CCcEEEEEecCCc-EEEE--EeCCCcEEEEE
Confidence 0 0000 0 0000 00000000 011223332 3 3399999999999 6544 44689999999
Q ss_pred ccCCCCC---CCccccc-ccCCceEEEEEE-----eCC---cEEEEEcCCCEEEEEec---C-CceeeeecCC------c
Q 000961 396 IPKDSIG---RGDSVQD-AKKGLGGSAIFI-----ARN---RFAVLDKSSNQVLVKNL---K-NEVVKKSILP------I 453 (1208)
Q Consensus 396 l~~~~~~---~~~~~~~-~~~~~i~~~~fs-----~d~---~~l~~~~~dg~I~Iwdl---~-~~~~~~l~~~------~ 453 (1208)
+...... .+ ..+. +|.+.|++++|+ ||| +++++++.|++|++||+ . ++....+.++ .
T Consensus 603 ~~~~~~~~~~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~ 681 (902)
T 2oaj_A 603 RRGPAIIYMENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKG 681 (902)
T ss_dssp TTTTEEEEEEEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSC
T ss_pred CCCCeEEEEeeh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCC
Confidence 8654221 11 1343 888999999999 885 89999999999999999 4 5566665544 2
Q ss_pred ceEEEE-Ee----------------------CCccEEEEeCCeEEEEEcCCCeEEEEEeCC--CeeEE---E------EC
Q 000961 454 AADAIF-YA----------------------GTGNLLCRAEDRVVIFDLQQRLVLGDLQTP--FVKYV---V------WS 499 (1208)
Q Consensus 454 ~v~~i~-~s----------------------~dg~~Las~dg~v~lwdl~~~~~l~~~~~~--~v~~v---~------ws 499 (1208)
+|..+. |+ ++|.+|++++..++||++.+++........ .+..| . ++
T Consensus 682 ~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~ 761 (902)
T 2oaj_A 682 PIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDR 761 (902)
T ss_dssp CCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCE
T ss_pred ceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEeccceEEEeCccccceeeEcccceeeeEEEEEEeccccccc
Confidence 566666 65 688899999999999999999988766432 23343 5 67
Q ss_pred CCCCEEEEEeCCe-EEEEe-cCccceeee
Q 000961 500 NDMESVALLSKHA-IIIAS-KKLVHQCTL 526 (1208)
Q Consensus 500 ~dg~~la~~s~~~-i~i~~-~~~~~~~~~ 526 (1208)
+++..|++++.++ |.+|+ ..++.+..+
T Consensus 762 ~~~~~l~~~~~~g~i~~~s~p~l~~~~~~ 790 (902)
T 2oaj_A 762 KNLTVIITLEINGHLRVFTIPDFKEQMSE 790 (902)
T ss_dssp EEEEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cCceEEEEEeCCCcEEEEECcchHHHhhc
Confidence 8899999999887 88888 445554443
No 15
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-41 Score=382.67 Aligned_cols=291 Identities=34% Similarity=0.744 Sum_probs=268.4
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
.++|.+|++.|++++|||++++|++++.||+|+|||+.+++.+..+..|..+|.+++|+|++++|++|+.|++|++||+.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCEEEEEEee-CCCEEEEEECCCeE
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTV 159 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg~V 159 (1208)
+++++..+.+|.+.|.+++|+|++++|++++.|++|++||+.++ .....+.+|...|.+++|+| ++..|++|+.|++|
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999877 56678899999999999999 56899999999999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCc
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP--TLPLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~g~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
++||+...... .....+|...+..+.|+| ++++|++|+.|+.|++||+.+++
T Consensus 166 ~iwd~~~~~~~--------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 166 KVWSLGQSTPN--------------------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp EEEETTCSSCS--------------------------EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred EEEECCCCCcc--------------------------ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence 99999764321 113346778899999987 77899999999999999999988
Q ss_pred eeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCC--EEEEEECCCeee
Q 000961 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN--LLAAGHDSGMIV 315 (1208)
Q Consensus 238 ~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~--~la~g~~~gi~v 315 (1208)
. +..+.+|...|.+++|+|++++|++++.||+|++||+.+++.+.++..+...+++++++|++. ++++|+++++++
T Consensus 220 ~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 220 C--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp E--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred c--ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 7 888999999999999999999999999999999999999999999999999999999999875 699999999888
Q ss_pred EeeCC
Q 000961 316 FKLER 320 (1208)
Q Consensus 316 ~~l~~ 320 (1208)
|.+..
T Consensus 298 ~~~~~ 302 (304)
T 2ynn_A 298 LSLGN 302 (304)
T ss_dssp EECC-
T ss_pred EEecc
Confidence 87654
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-40 Score=396.61 Aligned_cols=279 Identities=29% Similarity=0.511 Sum_probs=265.8
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
..+.+|.++|++++|+|++++|++|+.||+|+|||+.+++....+.+|.+.|++++|+|++++|++|+.|++|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
++++.++.+|...|.+++|+|++.+|++++.|++|++||+.++.++..+.+|...|.++.|+|++.+|++|+.|++|++|
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC--------------------CCEEEEE
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT--------------------LPLIVSG 222 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--------------------g~~L~sg 222 (1208)
|+.+.+. ...+.+|...|.+++|+|+ +++|++|
T Consensus 262 d~~~~~~---------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 262 VVATKEC---------------------------KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp ETTTCCE---------------------------EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred ECCCCce---------------------------eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9977442 3367789999999999996 6799999
Q ss_pred eCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCC
Q 000961 223 ADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEM 302 (1208)
Q Consensus 223 s~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~ 302 (1208)
+.|+.|++||+.++.. +..+.+|...|++++|+|++++|++++.||+|++||+.+++++.++..|...|++++|+|++
T Consensus 315 s~D~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392 (410)
T ss_dssp ETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred eCCCeEEEEECCCCce--EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence 9999999999999886 78889999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEC
Q 000961 303 NLLAAGHD 310 (1208)
Q Consensus 303 ~~la~g~~ 310 (1208)
.++++|+.
T Consensus 393 ~~l~sgs~ 400 (410)
T 1vyh_C 393 PYVVTGSV 400 (410)
T ss_dssp SCEEEEET
T ss_pred CEEEEEeC
Confidence 99999984
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=371.96 Aligned_cols=280 Identities=20% Similarity=0.372 Sum_probs=260.1
Q ss_pred ceEeecCCCCEEEEEEeCC----CCEEEEEecCCeEEEEECCCCeE--EEEecccccCEEEEEEEcCCCEEEEEECCCeE
Q 000961 2 LTKFETKSNRVKGLSFHSK----RPWILASLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspd----g~~Lasg~~dg~I~iWd~~~g~~--i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1208)
+..+++|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+++. ...+.+|...|.+++|+++++++++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3567899999999999985 67999999999999999987754 45688999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC
Q 000961 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL 155 (1208)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~ 155 (1208)
++||+.+++++..+..|...+.+++|+|++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~ 235 (1208)
||.|++||+.+.+. ...+.+|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 185 dg~i~iwd~~~~~~---------------------------~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 185 DGIINIFDIATGKL---------------------------LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp TSCEEEEETTTTEE---------------------------EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred CCeEEEEECCCCcE---------------------------EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999977442 336778999999999999999999999999999999998
Q ss_pred CceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 236 ~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
.+. ...+.+|...|.+++|+|++++|++++.|++|++||+.+++++.++..|.+.|++++|+|++++|++++.
T Consensus 238 ~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 238 ANL--AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp CCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cce--eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 886 7788999999999999999999999999999999999999999999999999999999999999998885
No 18
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.8e-39 Score=373.05 Aligned_cols=280 Identities=20% Similarity=0.362 Sum_probs=257.6
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
.+|.+|.+.|.+++|+|++++|++|+.||+|+|||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|++.+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C----eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 83 H----RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 83 ~----~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
+ +....+.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.+|...|.+++|+|+++++++|+.||+
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~ 207 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 5 46677889999999999998874 899999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|++||+++... ...+.+|...|++++|+|++++|++|+.||.|++||+.+.+.
T Consensus 208 v~~wd~~~~~~---------------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 208 AKLWDVREGMC---------------------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp EEEEETTTCSE---------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEECCCCee---------------------------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 99999976432 336778999999999999999999999999999999998876
Q ss_pred eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 239 WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 239 ~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
........+...|++++|+|++++|++|+.||.|++||+.++..+..+..|...|.+++|+|++.+|++|+.
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 332 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC
Confidence 322223344567999999999999999999999999999999999999999999999999999999999984
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.4e-38 Score=367.12 Aligned_cols=282 Identities=21% Similarity=0.332 Sum_probs=257.1
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
...|.+|.+.|.+++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|++.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC------eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee--CCCEEEEE
Q 000961 82 MH------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP--KEDLVVSA 153 (1208)
Q Consensus 82 ~~------~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p--~~~~l~s~ 153 (1208)
.. .....+.+|...|.++.|+|++..|++++.|++|++||+.+++++..+.+|...|.++.|+| ++++|++|
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 43 34567778999999999999999999999999999999999999999999999999999988 46899999
Q ss_pred ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000961 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (1208)
Q Consensus 154 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~ 233 (1208)
+.||+|++||+++.+. ...+.+|...|++++|+|++++|++|+.|+.|++||+
T Consensus 217 s~Dg~v~~wd~~~~~~---------------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQC---------------------------VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269 (354)
T ss_dssp ETTSCEEEEETTTCCE---------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCCeEEEEECCCCcE---------------------------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999987442 2356789999999999999999999999999999999
Q ss_pred CCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 234 NETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 234 ~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
+..+.........+...+++++|+|++.+|++++.|+.|++||+.++..+..+..|.+.|++++|+|++++|++|+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 98876333333344567899999999999999999999999999999999999999999999999999999999985
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=358.63 Aligned_cols=298 Identities=23% Similarity=0.372 Sum_probs=252.6
Q ss_pred ceEeecCCC-CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEE---EecccccCEEEEEEEcCCCEEEEEECCCeEEE
Q 000961 2 LTKFETKSN-RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKV 77 (1208)
Q Consensus 2 l~~l~~h~~-~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~---~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~v 77 (1208)
+.++.+|.. .|.+++|||+|++||+|+.||+|+|||+.++.... ...+|...|++++|+|++++|++|+.|++|++
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 678999998 99999999999999999999999999998876432 23689999999999999999999999999999
Q ss_pred EECCCC--eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCEEEEEEeeCCCEEEE
Q 000961 78 WNYKMH--RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 78 Wd~~~~--~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~---~~i~~l~~h~~~V~~l~~~p~~~~l~s 152 (1208)
|++.++ +++.++.+|...|.+++|+|++++|++++.|++|++||+.++ .++..+.+|...|.+++|+|++++|++
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 999876 567889999999999999999999999999999999999865 456778899999999999999999999
Q ss_pred EECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000961 153 ASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd 232 (1208)
++.|++|++||...... .....+.+|...|.+++|+|++++|++|+.||+|++|+
T Consensus 168 ~s~d~~i~~w~~~~~~~-------------------------~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDW-------------------------VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp EETTSCEEEEEEETTEE-------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeCCCcEEEEEecCCCE-------------------------EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 99999999999865321 12346789999999999999999999999999999999
Q ss_pred CCCCc-------------eeEEEeecC-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe---------eEEEeecC
Q 000961 233 MNETK-------------AWEVDTLRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT---------GVQTFRRE 289 (1208)
Q Consensus 233 ~~~~~-------------~~~~~~l~~-h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~---------~~~~~~~~ 289 (1208)
..... ...+..+.+ |...|.+++|+|++..|++++.|+.|++|+...+. .......|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 63221 011334444 88999999999999999999999999999986542 11223468
Q ss_pred CCCEEEEEEeCCC-CEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc
Q 000961 290 HDRFWILASHPEM-NLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (1208)
Q Consensus 290 ~~~i~~la~sp~~-~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~ 350 (1208)
...|++++|+|++ .+|++|+. |+.|++|++.+++.
T Consensus 303 ~~~V~~v~~~p~~~~~laS~s~--------------------------Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 303 SQDVNCVAWNPKEPGLLASCSD--------------------------DGEVAFWKYQRPEG 338 (345)
T ss_dssp SSCEEEEEECSSSTTEEEEEET--------------------------TSCEEEEEECC---
T ss_pred cCcEeEeEEeCCCceEEEEcCC--------------------------CCcEEEEEecCCCC
Confidence 8899999999987 48988884 66777888776554
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.2e-37 Score=350.95 Aligned_cols=279 Identities=27% Similarity=0.513 Sum_probs=256.3
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
..+.+|.+.|++++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
++++..+.+|...|.++.|+|++++|++++.|++|++||+.+++++..+..|...|.++.|+|+++++++++.||.|++|
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w 176 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~ 242 (1208)
|+.+.+.. ......+...+..++|+|++++|++++.||.|++||+.+++. +.
T Consensus 177 d~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~ 228 (312)
T 4ery_A 177 DTASGQCL--------------------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC--LK 228 (312)
T ss_dssp ETTTCCEE--------------------------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE--EE
T ss_pred ECCCCcee--------------------------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EE
Confidence 99875432 112345667899999999999999999999999999999886 66
Q ss_pred eecCcCCCeEE--EEE-ccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 243 TLRGHMNNVSC--VMF-HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 243 ~l~~h~~~V~~--l~~-sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
.+.+|...+.+ ..+ .+++.+|++|+.||.|++||+.+++.+..+..|.+.+.+++|+|+++++++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 77777665432 233 46789999999999999999999999999999999999999999999999886
No 22
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.2e-37 Score=352.43 Aligned_cols=277 Identities=21% Similarity=0.384 Sum_probs=246.9
Q ss_pred ceEeecCCCCEEEEEEeCCC-CEEEEEecCCeEEEEECCC-----CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeE
Q 000961 2 LTKFETKSNRVKGLSFHSKR-PWILASLHSGVIQLWDYRM-----GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKI 75 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg-~~Lasg~~dg~I~iWd~~~-----g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I 75 (1208)
..+|++|.+.|++++|+|++ ++|++|+.|++|++||+.. +..+..+.+|...|++++|+|++++|++|+.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 45899999999999999965 8999999999999999853 45677889999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeC------CCE
Q 000961 76 KVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPK------EDL 149 (1208)
Q Consensus 76 ~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~------~~~ 149 (1208)
++||+.+++++..+.+|...|.+++|+|++.+|++++.|++|++||+. +.++..+.+|...|.++.|+|. +..
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 999999999999999999999999999999999999999999999986 5677888999999999999985 448
Q ss_pred EEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 000961 150 VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229 (1208)
Q Consensus 150 l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~ 229 (1208)
+++++.|++|++||+.+.+ ....+.+|...|.+++|+|++++|++|+.||.|+
T Consensus 169 l~s~~~d~~i~~wd~~~~~---------------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~ 221 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQ---------------------------IEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221 (319)
T ss_dssp EEEEETTSCEEEEETTTTE---------------------------EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred EEEEeCCCEEEEEECCcch---------------------------hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 9999999999999997643 2335778999999999999999999999999999
Q ss_pred EEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec--------CCCCEEEEEEeCC
Q 000961 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR--------EHDRFWILASHPE 301 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~--------~~~~i~~la~sp~ 301 (1208)
+||+.+.+. +..+.. ...|.+++|+|++.++++++.+ .+++|++..+..+..+.. +...+.+++|+|+
T Consensus 222 iwd~~~~~~--~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 297 (319)
T 3frx_A 222 LWNLAAKKA--MYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297 (319)
T ss_dssp EEETTTTEE--EEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTT
T ss_pred EEECCCCcE--EEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCC
Confidence 999999886 555554 4689999999999999988865 499999988777766543 3456899999999
Q ss_pred CCEEEEEEC
Q 000961 302 MNLLAAGHD 310 (1208)
Q Consensus 302 ~~~la~g~~ 310 (1208)
|++|++|+.
T Consensus 298 g~~l~sg~~ 306 (319)
T 3frx_A 298 GQTLFAGYT 306 (319)
T ss_dssp SSEEEEEET
T ss_pred CCEEEEeec
Confidence 999999984
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.3e-38 Score=371.12 Aligned_cols=280 Identities=21% Similarity=0.373 Sum_probs=250.4
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
+.|.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred Ce-------EEEEEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEE-----ecCCCCEEEEEEee-CCC
Q 000961 83 HR-------CLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVL-----TGHNHYVMCASFHP-KED 148 (1208)
Q Consensus 83 ~~-------~~~~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~l-----~~h~~~V~~l~~~p-~~~ 148 (1208)
.. ....+.+|.+.|.++.|+|++ ..|++++.|++|++||+.+++.+..+ .+|...|.++.|+| +++
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 219 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN 219 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCC
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCC
Confidence 32 345678999999999999975 47999999999999999999998887 67999999999987 789
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcE
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 228 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I 228 (1208)
+|++|+.|++|++||++.... ....+.+|...|++++|+|++++|++|+.||+|
T Consensus 220 ~l~sgs~D~~v~~wd~~~~~~--------------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 220 MFISGSCDTTVRLWDLRITSR--------------------------AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp EEEEEETTSCEEEEETTTTCC--------------------------CCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred EEEEEECCCeEEEEECCCCCc--------------------------ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 999999999999999974221 122567899999999999999999999999999
Q ss_pred EEEECCCCceeEEEeecCc-------CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe----ecCCCCEEEEE
Q 000961 229 KLWRMNETKAWEVDTLRGH-------MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF----RREHDRFWILA 297 (1208)
Q Consensus 229 ~iwd~~~~~~~~~~~l~~h-------~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~----~~~~~~i~~la 297 (1208)
++||+.+++. +..+..+ ...|++++|+|+|++|++|+.||.|++||..+++.+..+ ..|.+.|++++
T Consensus 274 ~lwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 274 RLFDMRTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp EEEETTTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred EEEECCCCcE--EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence 9999999886 4444332 234899999999999999999999999999999888777 56888999999
Q ss_pred EeCCCCEEEEEEC
Q 000961 298 SHPEMNLLAAGHD 310 (1208)
Q Consensus 298 ~sp~~~~la~g~~ 310 (1208)
|+|++++|++|+.
T Consensus 352 ~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 352 LSSDGSALCTGSW 364 (380)
T ss_dssp ECSSSSEEEEECT
T ss_pred ECCCCCEEEEeeC
Confidence 9999999999984
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.9e-37 Score=362.69 Aligned_cols=289 Identities=26% Similarity=0.458 Sum_probs=262.6
Q ss_pred EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000961 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1208)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.+++...++.+|.+.|.+++|+|++++|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc
Q 000961 124 SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (1208)
Q Consensus 124 s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 203 (1208)
+++++..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++.. ...+.+|
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~---------------------------~~~~~~h 233 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC---------------------------VKTFTGH 233 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECC
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEeCC
Confidence 9999999999999999999999999999999999999999987442 2367789
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC--------------------CCEE
Q 000961 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK--------------------QDII 263 (1208)
Q Consensus 204 ~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~--------------------g~~l 263 (1208)
...|.++.|+|++.+|++|+.||.|++||+.++.. ...+.+|...|.+++|+|+ +.+|
T Consensus 234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 311 (410)
T 1vyh_C 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence 99999999999999999999999999999999886 7788999999999999996 6799
Q ss_pred EEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEE
Q 000961 264 VSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYY 343 (1208)
Q Consensus 264 ~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~ 343 (1208)
++|+.||+|++||+.++.++.++..|...|++++|+|+++++++|+. |+.|++|
T Consensus 312 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~--------------------------D~~i~vw 365 (410)
T 1vyh_C 312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD--------------------------DKTLRVW 365 (410)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET--------------------------TTEEEEE
T ss_pred EEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC--------------------------CCeEEEE
Confidence 99999999999999999999999999999999999999999999984 7789999
Q ss_pred EccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEc
Q 000961 344 EFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (1208)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l 396 (1208)
|+.+++....+. . | ...|++++|+|++.+++. ++.|+.+++|++
T Consensus 366 d~~~~~~~~~~~--~--h---~~~v~~l~~~~~~~~l~s--gs~D~~i~vW~~ 409 (410)
T 1vyh_C 366 DYKNKRCMKTLN--A--H---EHFVTSLDFHKTAPYVVT--GSVDQTVKVWEC 409 (410)
T ss_dssp CCTTSCCCEEEE--C--C---SSCEEEEEECSSSSCEEE--EETTSEEEEEC-
T ss_pred ECCCCceEEEEc--C--C---CCcEEEEEEcCCCCEEEE--EeCCCcEEEEeC
Confidence 998877654442 2 2 238999999999997654 446899999975
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-36 Score=347.08 Aligned_cols=281 Identities=23% Similarity=0.360 Sum_probs=233.0
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC--eEEEEe-cc-cccCEEEEEEEcCCCEEEEEECCCeEEE
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG--TLIDRF-DE-HDGPVRGVHFHKSQPLFVSGGDDYKIKV 77 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g--~~i~~l-~~-h~~~V~~l~fsp~~~~Lasgs~Dg~I~v 77 (1208)
+++|.+|.++|.+++|+|+ +|++|+.||+|++||+.++ +.+..+ .+ |.++|++++|+|++++|++|+.|++|++
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 5789999999999999998 9999999999999999875 455666 44 9999999999999999999999999999
Q ss_pred EECC-------CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC----CeEEEEEecCCCCEEEEEEeeC
Q 000961 78 WNYK-------MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS----RTCISVLTGHNHYVMCASFHPK 146 (1208)
Q Consensus 78 Wd~~-------~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s----~~~i~~l~~h~~~V~~l~~~p~ 146 (1208)
||+. +.+++..+.+|...|.+++|+|++++|++++.|++|++||+.. .+++..+.+|...|.+++|+|+
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence 9984 3467788899999999999999999999999999999999942 3677888999999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC--CCEEEEEeC
Q 000961 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT--LPLIVSGAD 224 (1208)
Q Consensus 147 ~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~L~sgs~ 224 (1208)
+++|++++.|++|++||..+... .....+.+|...|.+++|+|+ +.+|++|+.
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~-------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDW-------------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCCe-------------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 99999999999999999754211 133467899999999999998 778999999
Q ss_pred CCcEEEEECCCCc-----e-eEEEeecC-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--eEEE-eecCCC-CE
Q 000961 225 DRQVKLWRMNETK-----A-WEVDTLRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT--GVQT-FRREHD-RF 293 (1208)
Q Consensus 225 dg~I~iwd~~~~~-----~-~~~~~l~~-h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~--~~~~-~~~~~~-~i 293 (1208)
|++|++||+.... . .....+.+ |...|.+++|++++ +|++++.||.|++||..++. .... ...|.. .+
T Consensus 220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEI 298 (330)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCE
T ss_pred CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceE
Confidence 9999999986541 0 12344444 89999999999765 79999999999999988774 2333 345665 89
Q ss_pred EEEEEeC--CCCEEEEEEC
Q 000961 294 WILASHP--EMNLLAAGHD 310 (1208)
Q Consensus 294 ~~la~sp--~~~~la~g~~ 310 (1208)
.+++|+| ++++|++|+.
T Consensus 299 ~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EEEEEC-----CCEEEEET
T ss_pred EEEEEecCCCceEEEEecC
Confidence 9999999 6888998884
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.4e-36 Score=342.31 Aligned_cols=296 Identities=23% Similarity=0.439 Sum_probs=256.6
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
+...++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.++.|+|++++|++++.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
+.+++++..+.+|...|.+++|+|++++|++|+.||+|++||+.+... ....+.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--------------------------~~~~~~ 137 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--------------------------LEQTFE 137 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE--------------------------EEEEEC
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc--------------------------hhhhhc
Confidence 999999999999999999999999999999999999999999865321 234678
Q ss_pred ccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCC
Q 000961 202 GHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA--KQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 202 ~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp--~g~~l~sgs~dg~I~vwd~~ 278 (1208)
+|...|.+++|+| ++.+|++|+.|+.|++||+...... .....+|...+..+.|+| ++.+|++++.|++|++||+.
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS-EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc-ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 8999999999999 6789999999999999999876652 233346678899999987 77899999999999999999
Q ss_pred CCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecC
Q 000961 279 KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRR 358 (1208)
Q Consensus 279 ~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~ 358 (1208)
+++++.++..|...+.+++|+|++++|++|+. |+.|++||..+++....+...
T Consensus 217 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--------------------------Dg~i~iWd~~~~~~~~~~~~~- 269 (304)
T 2ynn_A 217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSE--------------------------DGTLKIWNSSTYKVEKTLNVG- 269 (304)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSEEEEEET--------------------------TSCEEEEETTTCCEEEEECCS-
T ss_pred CCccceeeCCCCCCEEEEEECCCCCEEEEEcC--------------------------CCeEEEEECCCCceeeeccCC-
Confidence 99999999999999999999999999999984 778999999988765544321
Q ss_pred CCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 359 PGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 359 ~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
...+.+++|+|++...+++++.++ .+.+|++..
T Consensus 270 ------~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 270 ------LERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp ------SSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred ------CccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 227889999998865433344344 566776653
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=358.52 Aligned_cols=327 Identities=16% Similarity=0.219 Sum_probs=276.9
Q ss_pred ecCCCCEEEEEEeCCCC-EEEEEecCCeEEEEEC----CCCe------EEEEecc----------cccCEEEEEEEcCCC
Q 000961 6 ETKSNRVKGLSFHSKRP-WILASLHSGVIQLWDY----RMGT------LIDRFDE----------HDGPVRGVHFHKSQP 64 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~-~Lasg~~dg~I~iWd~----~~g~------~i~~l~~----------h~~~V~~l~fsp~~~ 64 (1208)
..|.+.|++++|+|+++ +|++|+.||.|++||+ .+++ ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34569999999999999 9999999999999999 8887 4555543 688999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-------
Q 000961 65 LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHY------- 137 (1208)
Q Consensus 65 ~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~------- 137 (1208)
+|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 678889999999999999999999999999999999999999999999999888777
Q ss_pred --------EEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEE
Q 000961 138 --------VMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1208)
Q Consensus 138 --------V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 209 (1208)
+.++.|+|++ .+++++.||.|++||+.+.+.. ..+.+|...|.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~---------------------------~~~~~~~~~i~~ 252 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPT---------------------------GKLIGHHGPISV 252 (425)
T ss_dssp -----CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCS---------------------------EEECCCSSCEEE
T ss_pred cccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCcee---------------------------eeeccCCCceEE
Confidence 9999999975 6889999999999999875432 245678999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC
Q 000961 210 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 210 l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
++|+|++++|++++.||.|++||+.+.+. +..+.+|...|.+++|+|++ ++++++.||.|++||+.+++.+..+..+
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSC--SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCcc--ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence 99999999999999999999999998876 67778899999999999999 9999999999999999999999999999
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc------------------e
Q 000961 290 HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD------------------T 351 (1208)
Q Consensus 290 ~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~------------------~ 351 (1208)
...+.+++|+|+++++++++. ++.|++||+.+++. .
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~--------------------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFM--------------------------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEET--------------------------TSCEEEEECHHHHC--------------CEECC
T ss_pred CccEEEEEEcCCCCEEEEEEC--------------------------CCeEEEEECCCCccceeeeecccccccCcccch
Confidence 999999999999999999884 44555666655440 0
Q ss_pred eeEeecCCCCCCCCc--CCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 352 QVIPIRRPGSTSLNQ--SPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 352 ~~~~~~~~~~~~~~~--~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
.+..+..+ .. .|.+++|+|+++++++++ .+|.+++|+++
T Consensus 384 ~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~ 424 (425)
T 1r5m_A 384 LYASYQSS-----QDNDYIFDLSWNCAGNKISVAY--SLQEGSVVAIP 424 (425)
T ss_dssp EEEEECCT-----TCCCCEEEEEECTTSSEEEEEE--SSSCCEEEECC
T ss_pred hhhhhcCc-----ccCCceEEEEccCCCceEEEEe--cCceEEEEeec
Confidence 12222221 22 899999999999776543 57899999986
No 28
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=344.52 Aligned_cols=293 Identities=20% Similarity=0.351 Sum_probs=259.3
Q ss_pred CeEEEEecccccCEEEEEEEcC----CCEEEEEECCCeEEEEECCCCeE--EEEEccCCCCEEEEEEcCCCCEEEEEECC
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKS----QPLFVSGGDDYKIKVWNYKMHRC--LFTLLGHLDYIRTVQFHHEYPWIVSASDD 114 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~----~~~Lasgs~Dg~I~vWd~~~~~~--~~~l~~h~~~I~~v~fs~d~~~l~s~s~D 114 (1208)
|.....+.+|.++|++++|+|+ +.+|++|+.|++|+||++.+++. ...+.+|...|.+++|+++++.+++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 3445667799999999999875 56999999999999999987754 45789999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccc
Q 000961 115 QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (1208)
Q Consensus 115 g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1208)
++|++||+.+++++..+..|...+.+++|+|++++|++++.||.|++||+.+.+.
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~------------------------- 156 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK------------------------- 156 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-------------------------
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-------------------------
Confidence 9999999999999999999999999999999999999999999999999987542
Q ss_pred eEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000961 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 195 ~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~v 274 (1208)
...+..|...|.+++|+|++++|++|+.||.|++||+.+++. +..+.+|...|++++|+|++++|++++.||.|++
T Consensus 157 --~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~i 232 (321)
T 3ow8_A 157 --EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232 (321)
T ss_dssp --EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred --eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEE
Confidence 235667888999999999999999999999999999999886 7888999999999999999999999999999999
Q ss_pred EeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeE
Q 000961 275 WDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (1208)
Q Consensus 275 wd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~ 354 (1208)
||+.++.....+..|...|.+++|+|++.+|++++. |+.|++||+.+++.+..+
T Consensus 233 wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~--------------------------D~~v~iwd~~~~~~~~~~ 286 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS--------------------------DKSVKVWDVGTRTCVHTF 286 (321)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--------------------------TSCEEEEETTTTEEEEEE
T ss_pred EECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC--------------------------CCcEEEEeCCCCEEEEEE
Confidence 999999999999999999999999999999999984 778999999987765433
Q ss_pred eecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 355 PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 355 ~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
. ++ ...|.+++|+|+++.++. ++.|+.+++|+++
T Consensus 287 --~--~h---~~~v~~v~~s~~g~~l~s--~~~d~~i~vwd~p 320 (321)
T 3ow8_A 287 --F--DH---QDQVWGVKYNGNGSKIVS--VGDDQEIHIYDCP 320 (321)
T ss_dssp --C--CC---SSCEEEEEECTTSSEEEE--EETTCCEEEEECC
T ss_pred --c--CC---CCcEEEEEECCCCCEEEE--EeCCCeEEEEeCC
Confidence 2 22 338999999999997754 3367899999975
No 29
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.4e-36 Score=348.65 Aligned_cols=277 Identities=17% Similarity=0.371 Sum_probs=237.2
Q ss_pred ceEeecCCCCEEEEEE-----eC-CCCEEEEEecCCeEEEEECCC-------CeEEEEecccccCEEEEEEEcCCCEEEE
Q 000961 2 LTKFETKSNRVKGLSF-----HS-KRPWILASLHSGVIQLWDYRM-------GTLIDRFDEHDGPVRGVHFHKSQPLFVS 68 (1208)
Q Consensus 2 l~~l~~h~~~V~~laf-----sp-dg~~Lasg~~dg~I~iWd~~~-------g~~i~~l~~h~~~V~~l~fsp~~~~Las 68 (1208)
...|++|.+.|++++| ++ ++++|++|+.|++|++||+.+ +.....+.+|..+|++++|+|++.++++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 4579999999999999 77 999999999999999999864 3566788999999999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe---cCCCCEEEEEEee
Q 000961 69 GGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT---GHNHYVMCASFHP 145 (1208)
Q Consensus 69 gs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~---~h~~~V~~l~~~p 145 (1208)
|+.|++|++||+.+++++.++.+|...|.+++|+|++++|++++.|++|++||+... ...... +|...|.+++|+|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999744 333333 7889999999999
Q ss_pred CC----------CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 146 KE----------DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 146 ~~----------~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
++ .++++++.||+|++||... . ....+.+|...|.+++|+|+
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---------------------------~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q---------------------------IRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E---------------------------EEEEEECCSSCEEEEEECTT
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEcCCC-c---------------------------eeEEEcCccccceEEEECCC
Confidence 87 7999999999999999432 1 23467789999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE--Eee------
Q 000961 216 LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ--TFR------ 287 (1208)
Q Consensus 216 g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~--~~~------ 287 (1208)
|++|++|+.||.|++||+...... ...+ .+...|.+++|+|++.+++++ .|+.|++||+.+++... .+.
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~~-~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTYP-QREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSSC-SEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred CCEEEEEcCCCeEEEEECCCCccc-ceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 999999999999999999543321 2222 345679999999999887655 57789999998766543 333
Q ss_pred -----cCCCCEEEEEEeCCCCEEEEEEC
Q 000961 288 -----REHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 288 -----~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
.+...+++++|+|++++|++|+.
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 329 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFT 329 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecC
Confidence 46678999999999999999984
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=352.13 Aligned_cols=274 Identities=19% Similarity=0.237 Sum_probs=228.7
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-----------eEEEEecccccCEEEEEEEcCCCEEEEEECCCe
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-----------TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g-----------~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~ 74 (1208)
..|...|.+++|+|||++|++++ |+++++||.... ........|..+|++++|+|++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35677899999999999998876 778888873211 1111222467889999999985 6889999999
Q ss_pred EEEEECCCCeEEEE----EccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CE
Q 000961 75 IKVWNYKMHRCLFT----LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DL 149 (1208)
Q Consensus 75 I~vWd~~~~~~~~~----l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~ 149 (1208)
|+|||+.+++.+.. +.+|.+.|++++|+|++++|++++.|++|++||+.+++++..+.+|...|.+++|+|++ .+
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 99999998875543 45899999999999999999999999999999999999999999999999999999988 57
Q ss_pred EEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCcE
Q 000961 150 VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQV 228 (1208)
Q Consensus 150 l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~L~sgs~dg~I 228 (1208)
+++++.|++|++||+++.+.... .....|...+.+++|+|+ +++|++|+.||.|
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQ-------------------------IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEE-------------------------CC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred eeeeccccccccccccccceeee-------------------------eecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 89999999999999987553321 122345667899999995 5688999999999
Q ss_pred EEEECCCCceeEEEeecCcCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCC-EEE
Q 000961 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMN-LLA 306 (1208)
Q Consensus 229 ~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~-~la 306 (1208)
++||+.+++. +..+.+|...|++++|+|++ ++|++|+.|++|++||+.+++.+ .+..|.+.|++++|+|++. +++
T Consensus 240 ~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 240 SLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEE
T ss_pred EEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEE
Confidence 9999999887 78899999999999999998 57999999999999999988765 4678999999999999886 566
Q ss_pred EEE
Q 000961 307 AGH 309 (1208)
Q Consensus 307 ~g~ 309 (1208)
+++
T Consensus 317 s~s 319 (344)
T 4gqb_B 317 TVG 319 (344)
T ss_dssp EEE
T ss_pred EEc
Confidence 776
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.2e-36 Score=354.07 Aligned_cols=283 Identities=23% Similarity=0.388 Sum_probs=244.8
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEeccccc------------------CEEEEEEEcCCCEEE
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDG------------------PVRGVHFHKSQPLFV 67 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~------------------~V~~l~fsp~~~~La 67 (1208)
.+|.+.|.+++|||||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 36999999999999999999986 78999999999999888866542 399999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee-C
Q 000961 68 SGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-K 146 (1208)
Q Consensus 68 sgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p-~ 146 (1208)
+|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++++...+. +...+.+++|+| +
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999888876 557799999999 8
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 000961 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR 226 (1208)
Q Consensus 147 ~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg 226 (1208)
+++|++++.||+|++||+.+......... ......+|...|.+++|+|++++|++|+.||
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~--------------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDS--------------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC--------------------------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecc--------------------cccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 89999999999999999987543221000 0112357999999999999999999999999
Q ss_pred cEEEEECCCCce----------eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEE
Q 000961 227 QVKLWRMNETKA----------WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWIL 296 (1208)
Q Consensus 227 ~I~iwd~~~~~~----------~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~l 296 (1208)
.|++||+.+... .....+.+|...|.+++|+|++.+|++++.||.|++||..+++.+..+..|...|.++
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 999999976421 1245678899999999999999999999999999999999999999999999999999
Q ss_pred EEeC------CCCEEEEEEC
Q 000961 297 ASHP------EMNLLAAGHD 310 (1208)
Q Consensus 297 a~sp------~~~~la~g~~ 310 (1208)
+|++ ++++|++|+.
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp EECSSCTTCTTCEEEEEEET
T ss_pred EecCCcCcCCCCCEEEEECC
Confidence 9986 5778888874
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-36 Score=353.47 Aligned_cols=277 Identities=16% Similarity=0.253 Sum_probs=232.5
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEec------CCeEEEEECCCCeEEE----EecccccCEEEEEEEcCCCEEEEEECCCe
Q 000961 5 FETKSNRVKGLSFHSKRPWILASLH------SGVIQLWDYRMGTLID----RFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg~~Lasg~~------dg~I~iWd~~~g~~i~----~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~ 74 (1208)
...|...|++++|||||++||+++. |+.|++|+..++.... ...+|...|++++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 3569999999999999999999987 7889999987775433 3347899999999999985 556788999
Q ss_pred EEEEECCCCeEE----EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CE
Q 000961 75 IKVWNYKMHRCL----FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DL 149 (1208)
Q Consensus 75 I~vWd~~~~~~~----~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~ 149 (1208)
|+|||+.+++.. ....+|.+.|++++|+|++++|++++.|++|++||+.+++++..+.+|...|.+++|+|++ .+
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 999999887654 3445899999999999999999999999999999999999999999999999999999987 47
Q ss_pred EEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCcE
Q 000961 150 VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQV 228 (1208)
Q Consensus 150 l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~L~sgs~dg~I 228 (1208)
+++++.||+|++||+++.+..... ....|...+.+++|+|+ +.+|++|+.|+.|
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~-------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRI-------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBC-------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred eeeeccCCceEEEECCCCceeeee-------------------------eeccccccccchhhhhcccceEEEeecccce
Confidence 899999999999999875543211 23346778999999997 4689999999999
Q ss_pred EEEECCCCceeEEEeecCcCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeC-CCCEEE
Q 000961 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP-EMNLLA 306 (1208)
Q Consensus 229 ~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g-~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp-~~~~la 306 (1208)
++||+.+++. +..+.+|...|++++|+|++ ++|++++.||+|+|||+.+++.+..+ .|.+.|++++|+| ++.+|+
T Consensus 252 ~~wd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 252 SLVNIKNPDS--AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp EEEESSCGGG--CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEE
T ss_pred eEEECCCCcE--eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEE
Confidence 9999999887 77889999999999999987 57999999999999999999887665 6889999999998 789999
Q ss_pred EEEC
Q 000961 307 AGHD 310 (1208)
Q Consensus 307 ~g~~ 310 (1208)
+++.
T Consensus 329 s~s~ 332 (357)
T 4g56_B 329 TVGW 332 (357)
T ss_dssp EEET
T ss_pred EEcC
Confidence 8874
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-35 Score=340.07 Aligned_cols=290 Identities=20% Similarity=0.336 Sum_probs=256.7
Q ss_pred CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iw 120 (1208)
.+...++.+|.++|++++|+|++++|++|+.||+|++||..+++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceE
Q 000961 121 NWQSR----TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1208)
Q Consensus 121 d~~s~----~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1208)
|+.++ .....+.+|.+.|.++.|++++ .+++++.|++|++||+.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~--------------------------- 176 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQ--------------------------- 176 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEE---------------------------
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcE---------------------------
Confidence 99865 4667788999999999999876 589999999999999977442
Q ss_pred EEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 000961 197 KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 197 ~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd 276 (1208)
...+.+|...|.+++|+|+++++++|+.||.|++||+.++.. ...+.+|...|++++|+|++++|++++.||+|++||
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC--RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 336778999999999999999999999999999999999886 778899999999999999999999999999999999
Q ss_pred CCCCeeEEEeecCC--CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeE
Q 000961 277 VTKRTGVQTFRREH--DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (1208)
Q Consensus 277 ~~~~~~~~~~~~~~--~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~ 354 (1208)
+.+++.+..+..+. ..+.+++|+|+++++++|+. ++.|++||..+++....+
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--------------------------d~~i~vwd~~~~~~~~~~ 308 (340)
T 1got_B 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD--------------------------DFNCNVWDALKADRAGVL 308 (340)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET--------------------------TSEEEEEETTTCCEEEEE
T ss_pred CCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC--------------------------CCeEEEEEcccCcEeeEe
Confidence 99998887765432 47999999999999999984 778999999887764433
Q ss_pred eecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 355 PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 355 ~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
. +| ...|.+++|+|++..++. ++.|+.+++|+
T Consensus 309 --~--~h---~~~v~~~~~s~dg~~l~s--~s~D~~i~iWd 340 (340)
T 1got_B 309 --A--GH---DNRVSCLGVTDDGMAVAT--GSWDSFLKIWN 340 (340)
T ss_dssp --E--CC---SSCEEEEEECTTSSCEEE--EETTSCEEEEC
T ss_pred --e--cC---CCcEEEEEEcCCCCEEEE--EcCCccEEecC
Confidence 2 23 338999999999997754 44688999995
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.6e-35 Score=334.12 Aligned_cols=298 Identities=21% Similarity=0.375 Sum_probs=250.6
Q ss_pred eEEEEecccccCEEEEEEEcCC-CEEEEEECCCeEEEEECCC-----CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKM-----HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ 115 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~-----~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg 115 (1208)
.+..++.+|.++|++++|+|++ ++|++|+.|++|++|++.. +.++.++.+|...|.+++|+|++.+|++++.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4556789999999999999965 7999999999999999863 346778899999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 116 TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 116 ~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
+|++||+.+++++..+.+|...|.+++|+|++.+|++++.|++|++||+++.
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---------------------------- 139 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---------------------------- 139 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC----------------------------
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------------------------
Confidence 9999999999999999999999999999999999999999999999998642
Q ss_pred EEEEEeccCCCeEEEEEcCC------CCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC
Q 000961 196 VKYVLEGHDRGVNWAAFHPT------LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED 269 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp~------g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d 269 (1208)
....+.+|...|.++.|+|. +..+++++.|+.|++||+.+.+. ...+.+|...|.+++|+|++++|++++.|
T Consensus 140 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~sp~g~~l~s~~~d 217 (319)
T 3frx_A 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKD 217 (319)
T ss_dssp EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE--EEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh--heeecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 12356789999999999985 44899999999999999998876 67788999999999999999999999999
Q ss_pred CcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCc
Q 000961 270 KSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1208)
Q Consensus 270 g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~ 349 (1208)
|.|++||+.+++.+..+.. ...+.+++|+|++.+++++.++++.+|++.... .+.++....
T Consensus 218 g~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~------------------~~~~~~~~~ 278 (319)
T 3frx_A 218 GEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY------------------LVDDLRPEF 278 (319)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEETTEE------------------EEEEECCCC
T ss_pred CeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCe------------------eeeccCccc
Confidence 9999999999999988874 568999999999999999987776666553211 111111100
Q ss_pred ceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
. .... .+...+.+++|+|||++++. ++.|+.+++|++.+
T Consensus 279 ~-------~~~~-~~~~~v~~~~~spdg~~l~s--g~~Dg~i~vWd~~t 317 (319)
T 3frx_A 279 A-------GYSK-AAEPHAVSLAWSADGQTLFA--GYTDNVIRVWQVMT 317 (319)
T ss_dssp T-------TCCG-GGCCCEEEEEECTTSSEEEE--EETTSCEEEEEEEE
T ss_pred c-------cccc-CcCcceeEEEECCCCCEEEE--eecCceEEEEEEee
Confidence 0 0000 11226889999999998754 44688999999864
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=339.24 Aligned_cols=306 Identities=23% Similarity=0.390 Sum_probs=251.2
Q ss_pred CeEEEEeccccc-CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE--E-EccCCCCEEEEEEcCCCCEEEEEECCCc
Q 000961 41 GTLIDRFDEHDG-PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF--T-LLGHLDYIRTVQFHHEYPWIVSASDDQT 116 (1208)
Q Consensus 41 g~~i~~l~~h~~-~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~--~-l~~h~~~I~~v~fs~d~~~l~s~s~Dg~ 116 (1208)
.+++.++.+|.. .|.+++|+|++++|++|+.|++|+|||+.++.... . ..+|...|.+++|+|++++|++++.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356778889988 99999999999999999999999999998876432 2 3689999999999999999999999999
Q ss_pred EEEEECCCC--eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccc
Q 000961 117 IRIWNWQSR--TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (1208)
Q Consensus 117 I~iwd~~s~--~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1208)
|++||+.++ +++..+.+|...|.+++|+|++++|++++.|++|++||+......
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~------------------------ 140 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY------------------------ 140 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE------------------------
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe------------------------
Confidence 999998876 467888999999999999999999999999999999998764321
Q ss_pred eEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000961 195 VVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 195 ~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~v 274 (1208)
.....+.+|...|.+++|+|++++|++|+.|+.|++|+..++.......+.+|...|++++|+|++++|++++.||+|++
T Consensus 141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~i 220 (345)
T 3fm0_A 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220 (345)
T ss_dssp EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEE
Confidence 12346778999999999999999999999999999999988775556788999999999999999999999999999999
Q ss_pred EeCCCC---------------eeEEEeec-CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCC
Q 000961 275 WDVTKR---------------TGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDR 338 (1208)
Q Consensus 275 wd~~~~---------------~~~~~~~~-~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~ 338 (1208)
||.... .++.++.. |...|++++|+|++..+++++. |+
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--------------------------d~ 274 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG--------------------------DD 274 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET--------------------------TS
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC--------------------------CC
Confidence 996321 23344444 6778999999999999998874 66
Q ss_pred eEEEEEccCCcce--eeEee---cCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCC
Q 000961 339 FLRYYEFSTQKDT--QVIPI---RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1208)
Q Consensus 339 ~i~v~d~~~~~~~--~~~~~---~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~ 400 (1208)
.|++|+...+... +...+ ...+| ...|.+++|+|++..+++++ +.||.+++|++....
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~v~~~p~~~~~laS~-s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAH---SQDVNCVAWNPKEPGLLASC-SDDGEVAFWKYQRPE 337 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSS---SSCEEEEEECSSSTTEEEEE-ETTSCEEEEEECC--
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccc---cCcEeEeEEeCCCceEEEEc-CCCCcEEEEEecCCC
Confidence 7888887654321 11111 11233 34899999999986444443 478999999988653
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-37 Score=365.69 Aligned_cols=361 Identities=12% Similarity=0.234 Sum_probs=283.9
Q ss_pred CCCEEEEEEeCCCC-EEEEE----------ecCCeEEEEECCCCe---EEEEecccccCEEEEEEEcCCCEEEEEECCCe
Q 000961 9 SNRVKGLSFHSKRP-WILAS----------LHSGVIQLWDYRMGT---LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (1208)
Q Consensus 9 ~~~V~~lafspdg~-~Lasg----------~~dg~I~iWd~~~g~---~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~ 74 (1208)
..+|.+++|+|+++ +|+++ +.||.|+|||+.++. .+..+ .|..+|++++|+|++++|++|+.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 35789999999987 99999 789999999998875 33444 68999999999999999999999999
Q ss_pred EEEEECCC----CeEEEEEccCCCCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCe------EEE---EEecCCCCEEE
Q 000961 75 IKVWNYKM----HRCLFTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRT------CIS---VLTGHNHYVMC 140 (1208)
Q Consensus 75 I~vWd~~~----~~~~~~l~~h~~~I~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s~~------~i~---~l~~h~~~V~~ 140 (1208)
|++||+.+ .+.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++ ... ....|...|.+
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS 170 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence 99999987 4588889999999999999998 8899999999999999999876 333 23678999999
Q ss_pred EEEeeC-CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec------cCCCeEEEEEc
Q 000961 141 ASFHPK-EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG------HDRGVNWAAFH 213 (1208)
Q Consensus 141 l~~~p~-~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~s 213 (1208)
++|+|+ +.++++++.||.|++||+.+.+... .+.. |...|.+++|+
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVI---------------------------HLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEEEE---------------------------EECCCCCSSCCCCCEEEEEEC
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCcce---------------------------EEeccccccccCCceEEEEEC
Confidence 999999 6899999999999999998754322 2222 37889999999
Q ss_pred CCC-CEEEEEeCCC---cEEEEECCCCceeEEEeec-CcCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEee
Q 000961 214 PTL-PLIVSGADDR---QVKLWRMNETKAWEVDTLR-GHMNNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287 (1208)
Q Consensus 214 p~g-~~L~sgs~dg---~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~~sp-~g~~l~sgs~dg~I~vwd~~~~~~~~~~~ 287 (1208)
|++ .++++++.|+ .|++||+.+... ....+. +|...|++++|+| ++++|++++.||.|++||+.+++.+..+.
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence 997 6899999998 999999998632 156677 8999999999999 99999999999999999999999999999
Q ss_pred cCCCCEEEEEEeCCC-CEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCc
Q 000961 288 REHDRFWILASHPEM-NLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQ 366 (1208)
Q Consensus 288 ~~~~~i~~la~sp~~-~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 366 (1208)
.|...+++++|+|++ .++++++ .|+.|++|++.++............ .
T Consensus 303 ~~~~~v~~~~~s~~~~~~l~s~~--------------------------~d~~i~iw~~~~~~~~~~~~~~~~~--~--- 351 (416)
T 2pm9_A 303 ARGNWCFKTKFAPEAPDLFACAS--------------------------FDNKIEVQTLQNLTNTLDEQETETK--Q--- 351 (416)
T ss_dssp CSSSCCCCEEECTTCTTEEEECC--------------------------SSSEEEEEESCCCCCSSCC------------
T ss_pred CCCCceEEEEECCCCCCEEEEEe--------------------------cCCcEEEEEccCCCCCccccccccc--c---
Confidence 999999999999998 7888887 4778899999876543221100000 0
Q ss_pred CCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC
Q 000961 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (1208)
Q Consensus 367 ~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~ 443 (1208)
......+.+.+..++ .....+.+ .+ .....+...+.+++|+++|+++++++.|++|+||++..
T Consensus 352 ~~~~~~~~~~~~~~~--~~~~~~~~---~~---------~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 352 QESETDFWNNVSREE--SKEKPSVF---HL---------QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -----------------CCSCCCSS---CC---------CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cCCcccccccccccc--cccccccc---cc---------cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 111222222222111 11111111 11 12334566777899999999999999999999999874
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=350.49 Aligned_cols=362 Identities=10% Similarity=0.090 Sum_probs=277.7
Q ss_pred CCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEEC----CCCe------EEEEEcc-------
Q 000961 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNY----KMHR------CLFTLLG------- 91 (1208)
Q Consensus 30 dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~----~~~~------~~~~l~~------- 91 (1208)
...+.+|++...........|.++|++++|+|+++ +|++|+.||.|++||+ .+++ ....+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ----------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 34567888876665555556789999999999999 9999999999999999 8887 4555544
Q ss_pred ---CCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 000961 92 ---HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1208)
Q Consensus 92 ---h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~ 168 (1208)
|.+.|++++|+|++++|++++.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+.+
T Consensus 104 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp ----CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred ccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence 678999999999999999999999999999 6788889999999999999999999999999999999999998755
Q ss_pred cccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcC
Q 000961 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248 (1208)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~ 248 (1208)
........... ...............+.+++|+|++ .+++++.+|.|++||+.+++. +..+..|.
T Consensus 183 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~--~~~~~~~~ 247 (425)
T 1r5m_A 183 VMQHFELKETG------------GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP--TGKLIGHH 247 (425)
T ss_dssp EEEEECCC---------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC--SEEECCCS
T ss_pred EEEEeeccccC------------ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce--eeeeccCC
Confidence 43211100000 0000000111222338899999985 689999999999999999876 67788999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEec
Q 000961 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVS 328 (1208)
Q Consensus 249 ~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~ 328 (1208)
..|.+++|+|++++|++++.||.|++||+.+++.+..+..+...+.+++|+|++ ++++++.
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~------------------ 308 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSM------------------ 308 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEET------------------
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeC------------------
Confidence 999999999999999999999999999999999999998899999999999999 8888773
Q ss_pred CCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC-------
Q 000961 329 GDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI------- 401 (1208)
Q Consensus 329 ~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~------- 401 (1208)
++.|++||+.+++....... + ...+.+++|+|+++.+++++ .+|.+++|++.....
T Consensus 309 --------d~~i~i~d~~~~~~~~~~~~--~-----~~~i~~~~~s~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~ 371 (425)
T 1r5m_A 309 --------DGSVRLWSLKQNTLLALSIV--D-----GVPIFAGRISQDGQKYAVAF--MDGQVNVYDLKKLNSKSRSLYG 371 (425)
T ss_dssp --------TSEEEEEETTTTEEEEEEEC--T-----TCCEEEEEECTTSSEEEEEE--TTSCEEEEECHHHHC-------
T ss_pred --------CCcEEEEECCCCcEeEeccc--C-----CccEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCccceeeeec
Confidence 77889999988776544432 1 22899999999999776543 578999999875430
Q ss_pred ----------CCCcccccccCC--ceEEEEEEeCCcEEEEEcCCCEEEEEecCC
Q 000961 402 ----------GRGDSVQDAKKG--LGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (1208)
Q Consensus 402 ----------~~~~~~~~~~~~--~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~ 443 (1208)
......+..|.. .+.+++|+|+++++++++.||.|++|++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 372 NRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp -------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred ccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 002234556655 888889998888888888888899998753
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.7e-36 Score=352.77 Aligned_cols=314 Identities=19% Similarity=0.278 Sum_probs=265.1
Q ss_pred CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEE
Q 000961 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVS 110 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s 110 (1208)
..+..|+..+.....++.+|.++|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE
Confidence 34556887888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCcEEEEECCCCe-------EEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeec
Q 000961 111 ASDDQTIRIWNWQSRT-------CISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLS 182 (1208)
Q Consensus 111 ~s~Dg~I~iwd~~s~~-------~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~ 182 (1208)
++.|+.|++||+.+.. ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.......
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~------- 198 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS------- 198 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC-------
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec-------
Confidence 9999999999987532 345678999999999999975 6799999999999999987653321000
Q ss_pred cccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-ceeEEEeecCcCCCeEEEEEccCC
Q 000961 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNET-KAWEVDTLRGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~-~~~~~~~l~~h~~~V~~l~~sp~g 260 (1208)
....+|...|.+++|+| ++.+|++|+.||.|++||++.. .. +..+.+|...|.+++|+|++
T Consensus 199 ---------------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~--~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 199 ---------------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA--VRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp ---------------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC--CEEECCCSSCCCEEEECTTS
T ss_pred ---------------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc--eEEECCcCCCeEEEEEecCC
Confidence 01146889999999987 8899999999999999999743 43 67889999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEeecCCC-------CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEE
Q 000961 261 DIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-------RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLF 333 (1208)
Q Consensus 261 ~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-------~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~ 333 (1208)
++|++++.||+|++||+.++..+..+..+.. .+++++|+|+++++++|+.
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----------------------- 318 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS----------------------- 318 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------------------
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----------------------
Confidence 9999999999999999999999888765432 3789999999999999984
Q ss_pred EEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 334 YAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 334 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
++.|++||..+++....+.....+| ...|.+++|+|+|+.++ +++.|+.+++|++...
T Consensus 319 ---dg~i~vwd~~~~~~~~~~~~~~~~h---~~~v~~l~~s~dg~~l~--sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 319 ---NGDCYVWDTLLAEMVLNLGTLQNSH---EGRISCLGLSSDGSALC--TGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSCSSC---CCCCCEEEECSSSSEEE--EECTTSCEEEEECCSS
T ss_pred ---CCCEEEEECCCCceEEEEecccCCC---CCceEEEEECCCCCEEE--EeeCCCCEEEEecCCC
Confidence 7788999998877644332222333 44999999999999764 4557899999998753
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.6e-35 Score=336.64 Aligned_cols=322 Identities=14% Similarity=0.167 Sum_probs=274.0
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe--
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-- 84 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-- 84 (1208)
.|.++|.+++|+|||++++++..++.+.+|+...........+|..+|++++|+|++++|++++ ||.|++||+.+++
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 3567899999999999999998888777776655544444458999999999999999999999 9999999998764
Q ss_pred -EEEEEc--cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCEEEEEEeeCCCEEEEEECCCeE
Q 000961 85 -CLFTLL--GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASFHPKEDLVVSASLDQTV 159 (1208)
Q Consensus 85 -~~~~l~--~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~--~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V 159 (1208)
.+..+. +|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|+++++++++.||.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 333333 799999999999999999999999999999999887 667788899999999999999999999999999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
++||+.+.+. ...+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 166 ~~~d~~~~~~---------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~- 217 (337)
T 1gxr_A 166 AVWDLHNQTL---------------------------VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ- 217 (337)
T ss_dssp EEEETTTTEE---------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred EEEeCCCCce---------------------------eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-
Confidence 9999987432 235667999999999999999999999999999999999875
Q ss_pred EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeC
Q 000961 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 240 ~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~ 319 (1208)
+..+ .+...+.+++|+|+++++++++.+|.|++||+.+++.. .+..+...+.+++|+|+++++++++.
T Consensus 218 -~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~--------- 285 (337)
T 1gxr_A 218 -LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGK--------- 285 (337)
T ss_dssp -EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEET---------
T ss_pred -Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecC---------
Confidence 3333 47788999999999999999999999999999887754 56778889999999999999999884
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEc
Q 000961 320 RERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (1208)
Q Consensus 320 ~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l 396 (1208)
++.+++|++.+++...... + ...+.+++|+|+++.+++++ .+|.+++|++
T Consensus 286 -----------------dg~i~~~~~~~~~~~~~~~-----~---~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~ 335 (337)
T 1gxr_A 286 -----------------DNLLNAWRTPYGASIFQSK-----E---SSSVLSCDISVDDKYIVTGS--GDKKATVYEV 335 (337)
T ss_dssp -----------------TSEEEEEETTTCCEEEEEE-----C---SSCEEEEEECTTSCEEEEEE--TTSCEEEEEE
T ss_pred -----------------CCcEEEEECCCCeEEEEec-----C---CCcEEEEEECCCCCEEEEec--CCCeEEEEEE
Confidence 6788899998877653322 1 22899999999999776543 5789999986
No 40
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-34 Score=334.30 Aligned_cols=290 Identities=19% Similarity=0.259 Sum_probs=255.0
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
+...++.+|.++|++++|+|++++|+||+.||+|+|||..+++....+..|...|.+++|+|++..+++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 122 WQSR------TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 122 ~~s~------~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
+... .....+.+|...|.++.|+|++..|++++.|++|++||+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-------------------------- 188 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-------------------------- 188 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--------------------------
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE--------------------------
Confidence 8643 34566778999999999999999999999999999999987542
Q ss_pred EEEEEeccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000961 196 VKYVLEGHDRGVNWAAFHP--TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIR 273 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp--~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~ 273 (1208)
...+.+|...|.+++|+| ++++|++|+.||.|++||+.+++. +..+.+|...|.+++|+|++.+|++++.|++|+
T Consensus 189 -~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 189 -LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265 (354)
T ss_dssp -EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence 336778999999999988 578999999999999999999887 778899999999999999999999999999999
Q ss_pred EEeCCCCeeEEEeecCC--CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcce
Q 000961 274 VWDVTKRTGVQTFRREH--DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT 351 (1208)
Q Consensus 274 vwd~~~~~~~~~~~~~~--~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~ 351 (1208)
+||+.++..+..+..+. ..+.+++|+|+++++++|+. |+.|++||+.+++..
T Consensus 266 lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~--------------------------d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 266 LYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN--------------------------DYTINVWDVLKGSRV 319 (354)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET--------------------------TSCEEEEETTTCSEE
T ss_pred EEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC--------------------------CCcEEEEECCCCceE
Confidence 99999988877765443 46889999999999999984 778999999887764
Q ss_pred eeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 352 QVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
..+ . +| ...|.+++|+|+|++++. ++.|+.+++|+
T Consensus 320 ~~l--~--~h---~~~v~~l~~spdg~~l~s--gs~D~~v~vW~ 354 (354)
T 2pbi_B 320 SIL--F--GH---ENRVSTLRVSPDGTAFCS--GSWDHTLRVWA 354 (354)
T ss_dssp EEE--C--CC---SSCEEEEEECTTSSCEEE--EETTSEEEEEC
T ss_pred EEE--E--CC---CCcEEEEEECCCCCEEEE--EcCCCCEEecC
Confidence 432 2 33 339999999999997754 44689999994
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.9e-34 Score=331.32 Aligned_cols=296 Identities=21% Similarity=0.399 Sum_probs=241.7
Q ss_pred eEEEEecccccCEEEEEE-----Ec-CCCEEEEEECCCeEEEEECCC-------CeEEEEEccCCCCEEEEEEcCCCCEE
Q 000961 42 TLIDRFDEHDGPVRGVHF-----HK-SQPLFVSGGDDYKIKVWNYKM-------HRCLFTLLGHLDYIRTVQFHHEYPWI 108 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~f-----sp-~~~~Lasgs~Dg~I~vWd~~~-------~~~~~~l~~h~~~I~~v~fs~d~~~l 108 (1208)
+....+.+|.++|++++| ++ ++++|++|+.|++|++||+.+ +.+...+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456678899999999999 66 899999999999999999874 35677889999999999999999999
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccc
Q 000961 109 VSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDL 188 (1208)
Q Consensus 109 ~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1208)
++++.|++|++||+.+++++..+.+|...|.+++|+|++++|++++.|++|++||+........
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~---------------- 155 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS---------------- 155 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEEC----------------
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeee----------------
Confidence 9999999999999999999999999999999999999999999999999999999864221100
Q ss_pred cccccceEEEEEeccCCCeEEEEEcCCC----------CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEcc
Q 000961 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTL----------PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA 258 (1208)
Q Consensus 189 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g----------~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp 258 (1208)
....+|...|.+++|+|++ ++|++++.||.|++||.. ... ...+.+|...|.+++|+|
T Consensus 156 ---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~--~~~~~~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 156 ---------AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQI--RYTFKAHESNVNHLSISP 223 (343)
T ss_dssp ---------CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEE--EEEEECCSSCEEEEEECT
T ss_pred ---------ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cce--eEEEcCccccceEEEECC
Confidence 0112688889999999987 799999999999999954 333 667889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-CeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeC
Q 000961 259 KQDIIVSNSEDKSIRVWDVTK-RTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (1208)
Q Consensus 259 ~g~~l~sgs~dg~I~vwd~~~-~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d 337 (1208)
+|++|++++.||.|++||+.+ ......+. +...+.+++|+|++.+++++.++++.+
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~i---------------------- 280 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKI---------------------- 280 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEE----------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEE----------------------
Confidence 999999999999999999944 44444443 456799999999999998888655554
Q ss_pred CeEEEEEccCCcceeeEeecC---------CCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 338 RFLRYYEFSTQKDTQVIPIRR---------PGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~---------~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
|++.+++......+.. .++ ...+.+++|+|+|+.+++ ++.||.+++|++..
T Consensus 281 -----w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~s--g~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 281 -----FNLMTQSKAPVCTIEAEPITKAEGQKGK---NPQCTSLAWNALGKKLFA--GFTDGVIRTFSFET 340 (343)
T ss_dssp -----EESSSCCSCSEEECCCCSGGGBTTBCCS---CCCEEEEEECSSSCCEEE--EETTSEEEEEEEEE
T ss_pred -----EEeCCCCCCceEEeecCcchhhhhhcCC---CCceEEEEECCCCCeEEE--ecCCceEEEEEEEc
Confidence 5544433332222211 123 337899999999997755 34689999999763
No 42
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-34 Score=331.91 Aligned_cols=291 Identities=14% Similarity=0.284 Sum_probs=263.5
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
.+|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCCe-----------EEEEEecCCC--CEEEEEEe
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQSRT-----------CISVLTGHNH--YVMCASFH 144 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D-----g~I~iwd~~s~~-----------~i~~l~~h~~--~V~~l~~~ 144 (1208)
++++..+. |...|.+++|+|+++++++++.+ +.|++||+.++. .+..+..|.+ .+.+++|+
T Consensus 106 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 106 GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 99999888 88999999999999999999999 999999987553 3445566666 99999999
Q ss_pred eCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 145 p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
|++++|++++.||.|++||+.+.. .....+..|...|.+++|+|++++|++++.
T Consensus 185 ~~~~~l~~~~~dg~i~i~d~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 185 TKGKYIIAGHKDGKISKYDVSNNY--------------------------EYVDSIDLHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp GGGCEEEEEETTSEEEEEETTTTT--------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCEEEEEcCCCEEEEEECCCCc--------------------------EeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence 999999999999999999997621 123467789999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC--------------cEEEEeCCCCeeEEEeecCC
Q 000961 225 DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK--------------SIRVWDVTKRTGVQTFRREH 290 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg--------------~I~vwd~~~~~~~~~~~~~~ 290 (1208)
||.|++||+.+.+. +..+. +...+.+++|+|+++++++++.++ .+++||..+++.+..+..|.
T Consensus 239 d~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 315 (369)
T 3zwl_B 239 DTNSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315 (369)
T ss_dssp TSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS
T ss_pred CceEEEEECCCCce--eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc
Confidence 99999999999886 44444 778999999999999999999988 89999999999999999999
Q ss_pred CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCc
Q 000961 291 DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1208)
Q Consensus 291 ~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~ 349 (1208)
..|.+++|+|++++|++++. |+.|++|++.++.
T Consensus 316 ~~v~~~~~s~~~~~l~s~~~--------------------------dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 316 GPLNTVAISPQGTSYASGGE--------------------------DGFIRLHHFEKSY 348 (369)
T ss_dssp SCEEEEEECTTSSEEEEEET--------------------------TSEEEEEEECHHH
T ss_pred CcEEEEEECCCCCEEEEEcC--------------------------CCeEEEEECcccc
Confidence 99999999999999999984 6677788877643
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.9e-34 Score=323.81 Aligned_cols=295 Identities=26% Similarity=0.437 Sum_probs=256.3
Q ss_pred CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iw 120 (1208)
.....++.+|.++|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 121 NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 121 d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
|+.+++++..+.+|...|.++.|+|++++|++++.||+|++||+++.+. ...+
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------------~~~~ 145 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---------------------------LKTL 145 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE---------------------------EEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE---------------------------EEEe
Confidence 9999999999999999999999999999999999999999999987442 2356
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEee-cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL-RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l-~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
..|...|.+++|+|++++|++++.||.|++||+.+++. +..+ ..+...+.+++|+|++++|++++.||.|++||+.+
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 77999999999999999999999999999999998876 4443 45667899999999999999999999999999999
Q ss_pred CeeEEEeecCCCCEE---EEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEee
Q 000961 280 RTGVQTFRREHDRFW---ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (1208)
Q Consensus 280 ~~~~~~~~~~~~~i~---~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~ 356 (1208)
++.+..+..+..... .....+++.++++|+ .|+.|++||+.+++....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~--------------------------~dg~i~vwd~~~~~~~~~~-- 275 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS--------------------------EDNLVYIWNLQTKEIVQKL-- 275 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSCEEEECC--------------------------TTSCEEEEETTTCCEEEEE--
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC--------------------------CCCEEEEEECCCchhhhhh--
Confidence 999988887765432 222335667777776 4778999999987764433
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
. +| ...+.+++|+|+++.++.++.+.|+.+++|+..
T Consensus 276 ~--~h---~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 276 Q--GH---TDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp C--CC---SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred h--cc---CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2 23 238999999999998877765678999999864
No 44
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.8e-34 Score=326.37 Aligned_cols=290 Identities=23% Similarity=0.384 Sum_probs=252.2
Q ss_pred eEeecCCCCEEEEEEeCC-CCEEEEEecCCeEEEEECCCC-----eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEE
Q 000961 3 TKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspd-g~~Lasg~~dg~I~iWd~~~g-----~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~ 76 (1208)
.+|+||.+.|++|+|+|+ +++|++|+.||+|+|||+.++ .....+.+|..+|++++|+|++++|++|+.|+.|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 468999999999999997 689999999999999998754 35677899999999999999999999999999999
Q ss_pred EEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCEEEEEEeeCC--CEEEEE
Q 000961 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI-SVLTGHNHYVMCASFHPKE--DLVVSA 153 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i-~~l~~h~~~V~~l~~~p~~--~~l~s~ 153 (1208)
+|+............+...+..+.+++++++|++++.|+.+++||....... ....+|...+.+++|++++ .+++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999998866543 3456789999999998865 678999
Q ss_pred ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000961 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (1208)
Q Consensus 154 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~ 233 (1208)
+.|+.|++||+.+.+. ...+.+|...|++++|+|++++|++|+.||.|++||+
T Consensus 192 ~~d~~i~i~d~~~~~~---------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 192 GWDKLVKVWNLANCKL---------------------------KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp ETTSCEEEEETTTTEE---------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred cCCCEEEEEECCCCce---------------------------eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 9999999999987442 3367789999999999999999999999999999999
Q ss_pred CCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee---------cCCCCEEEEEEeCCCCE
Q 000961 234 NETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR---------REHDRFWILASHPEMNL 304 (1208)
Q Consensus 234 ~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~---------~~~~~i~~la~sp~~~~ 304 (1208)
.+.+. +..+.. ...|.++.|+|++.++ +++.|+.|++||+.++..+..+. .+...|++++|+|++++
T Consensus 245 ~~~~~--~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 245 NEGKH--LYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp TTTEE--EEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred ccCce--eeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 99886 555554 4689999999987654 56679999999999888776654 46678999999999999
Q ss_pred EEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCc
Q 000961 305 LAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1208)
Q Consensus 305 la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~ 349 (1208)
|++|+. |+.|++||+.+|.
T Consensus 321 l~sgs~--------------------------Dg~v~iW~~~tGt 339 (340)
T 4aow_A 321 LFAGYT--------------------------DNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEET--------------------------TSCEEEEEEEC--
T ss_pred EEEEeC--------------------------CCEEEEEeCCCcC
Confidence 999984 6678888888764
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.5e-35 Score=346.42 Aligned_cols=341 Identities=16% Similarity=0.164 Sum_probs=271.6
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEcc
Q 000961 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~ 91 (1208)
+++++|+|++++|++++.||.|++||+.+++....+..| ..+....|+|++++|++|+.||.|++||+.+++....+.+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 447999999999999999999999999988877777666 4455667899999999999999999999999999988899
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcccc
Q 000961 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKT 171 (1208)
Q Consensus 92 h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~ 171 (1208)
|...|++++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.||+|++||+++.+...
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765443
Q ss_pred ccCCCcceeeccccccccccccceEEE---------EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 000961 172 VSPADDILRLSQMNTDLFGGVDAVVKY---------VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1208)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~ 242 (1208)
...... ......... ....+...+.+++|+|++++|++|+.||.|++||+.+++.. ..
T Consensus 218 ~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~ 284 (420)
T 3vl1_A 218 TFNRKE------------NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT-IQ 284 (420)
T ss_dssp EECBTT------------BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE-EE
T ss_pred EeecCC------------CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee-EE
Confidence 221100 000000000 11234577888889999999999999999999999988752 23
Q ss_pred eecCcCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCee-EEEeec-CCCCEEEEEEeCCCCEEEEEECCCeeeEeeC
Q 000961 243 TLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRTG-VQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 243 ~l~~h~~~V~~l~~sp~g~-~l~sgs~dg~I~vwd~~~~~~-~~~~~~-~~~~i~~la~sp~~~~la~g~~~gi~v~~l~ 319 (1208)
....|...|++++|+|++. +|++++.||.|++||+.+++. +..+.. +...+.++.+ ++++++++++
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~---------- 353 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG---------- 353 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET----------
T ss_pred cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec----------
Confidence 3356889999999999999 999999999999999998754 667766 5566777755 5777888877
Q ss_pred CCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEe-ec----CCCCCCCCcCCeEEEEcCCCC---EEEEEEecCCCEE
Q 000961 320 RERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP-IR----RPGSTSLNQSPRTLSYSPTEN---AVLICSDVDGGSY 391 (1208)
Q Consensus 320 ~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~-~~----~~~~~~~~~~i~~l~~spdg~---~llv~~~~~~g~v 391 (1208)
.|+.|++|++.......... .. ..++ ...+.+++|+|+++ .+++++ .+|.+
T Consensus 354 ----------------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~~g~l~a~g--~~g~~ 412 (420)
T 3vl1_A 354 ----------------FDTSIKLDIISDPESERPAIEFETPTFLVSN---DDAVSQFCYVSDDESNGEVLEVG--KNNFC 412 (420)
T ss_dssp ----------------TTEEEEEEEECCTTCCSCEECTTSCEEECCS---SCCCCEEEEECCSSSSCEEEEEE--TTTEE
T ss_pred ----------------CCccEEEEeccCCCCCccceeccCccEEccC---CcceEEEEEccCCCCcceEEEEc--CCceE
Confidence 36778888877632211110 00 0122 34899999999999 665544 35799
Q ss_pred EEEEccC
Q 000961 392 ELYVIPK 398 (1208)
Q Consensus 392 ~l~~l~~ 398 (1208)
.+|++..
T Consensus 413 ~~~~~~~ 419 (420)
T 3vl1_A 413 ALYNLSN 419 (420)
T ss_dssp EEEESCC
T ss_pred EEEeccC
Confidence 9999764
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=324.70 Aligned_cols=302 Identities=20% Similarity=0.281 Sum_probs=236.9
Q ss_pred CCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC--eEEEEE-cc-CCCCEEEEEEcCCCCEEEEEECC
Q 000961 39 RMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH--RCLFTL-LG-HLDYIRTVQFHHEYPWIVSASDD 114 (1208)
Q Consensus 39 ~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~--~~~~~l-~~-h~~~I~~v~fs~d~~~l~s~s~D 114 (1208)
.+.+++..+.+|.++|.+++|+|+ +|++|+.|++|++||+.++ +....+ .+ |...|.+++|+|++++|++++.|
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 355678889999999999999998 9999999999999999875 455666 44 99999999999999999999999
Q ss_pred CcEEEEECC-------CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeecccccc
Q 000961 115 QTIRIWNWQ-------SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 115 g~I~iwd~~-------s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
++|++||+. +.+++..+.+|...|.+++|+|++++|++|+.|++|++||+.....
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~------------------ 141 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE------------------ 141 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC------------------
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC------------------
Confidence 999999984 3457788899999999999999999999999999999999853211
Q ss_pred ccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC--CCEEEE
Q 000961 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK--QDIIVS 265 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~--g~~l~s 265 (1208)
.......+.+|...|.+++|+|++.+|++|+.|+.|++||..++....+..+.+|...|.+++|+|+ +.+|++
T Consensus 142 -----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 142 -----EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp -----CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred -----CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence 0113346788999999999999999999999999999999887643347888999999999999998 779999
Q ss_pred EeCCCcEEEEeCCCC--------eeEEEeec-CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEe
Q 000961 266 NSEDKSIRVWDVTKR--------TGVQTFRR-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAK 336 (1208)
Q Consensus 266 gs~dg~I~vwd~~~~--------~~~~~~~~-~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~ 336 (1208)
++.|++|++||+.++ .....+.. |...|++++|++++ ++++++ .
T Consensus 217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~--------------------------~ 269 (330)
T 2hes_X 217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG--------------------------A 269 (330)
T ss_dssp EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE--------------------------T
T ss_pred EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe--------------------------C
Confidence 999999999998654 34444544 77889999999766 566666 3
Q ss_pred CCeEEEEEccCCcceeeEeecCCCCCCCCc-CCeEEEEcC--CCCEEEEEEecCCCEEEEEEccC
Q 000961 337 DRFLRYYEFSTQKDTQVIPIRRPGSTSLNQ-SPRTLSYSP--TENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 337 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~sp--dg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
|+.|++|+..+++....... ..+| .. .+.+++|+| +++.++. ++.||.+++|++..
T Consensus 270 dg~v~iw~~~~~~~~~~~~~-~~~h---~~~~v~~v~~~~~~~~~~las--~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 270 DGVLAVYEEVDGEWKVFAKR-ALCH---GVYEINVVKWLELNGKTILAT--GGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEE-SCTT---TTSCEEEEEEC-----CCEEE--EETTSEEEEEEC--
T ss_pred CCEEEEEEcCCCceEEEecc-cccc---ccceEEEEEEecCCCceEEEE--ecCCCcEEEEEecc
Confidence 66788888876642222221 1122 22 789999999 5665533 44789999999763
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-33 Score=324.59 Aligned_cols=275 Identities=15% Similarity=0.267 Sum_probs=246.9
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE---EEec--ccccCEEEEEEEcCCCEEEEEECCCeEEEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI---DRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i---~~l~--~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1208)
...+|.+.|++++|+|++++|++++ ||.|++||+.++... ..+. .|..+|++++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3458999999999999999999998 999999999877533 3332 799999999999999999999999999999
Q ss_pred ECCCCe--EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC
Q 000961 79 NYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD 156 (1208)
Q Consensus 79 d~~~~~--~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D 156 (1208)
|+.+++ ....+..|...|.+++|+|+++++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 999877 667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000961 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (1208)
Q Consensus 157 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~ 236 (1208)
|.|++||+++.+.. ....+...+.+++|+|+++++++++.++.|++||+.+.
T Consensus 205 g~i~~~d~~~~~~~----------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 205 NTVRSWDLREGRQL----------------------------QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp SEEEEEETTTTEEE----------------------------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred CcEEEEECCCCceE----------------------------eeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 99999999875422 12246788999999999999999999999999999988
Q ss_pred ceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECC
Q 000961 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDS 311 (1208)
Q Consensus 237 ~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~ 311 (1208)
+ ...+..|...|.+++|+|++++|++++.||.|++||+.+++.+... .+...+.+++|+|+++++++++.+
T Consensus 257 ~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 257 D---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp C---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETT
T ss_pred C---eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCC
Confidence 7 4567889999999999999999999999999999999998887554 467889999999999999988853
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-34 Score=340.73 Aligned_cols=288 Identities=14% Similarity=0.213 Sum_probs=256.0
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe------EEEEecccccCEEEEEEEcC----C---CEEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT------LIDRFDEHDGPVRGVHFHKS----Q---PLFVSG 69 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~------~i~~l~~h~~~V~~l~fsp~----~---~~Lasg 69 (1208)
+.+.+|.+.|++++|+| ++|++++.||.|++||+.+++ .+..+.+|..+|++++|+|+ + .+|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 56789999999999999 799999999999999999888 78888899999999999999 9 999999
Q ss_pred ECCCeEEEEECCCCeE-----EEEEccC-----CCCEEEEEEc----CCCCE-EEEEECCCcEEEEECCC------CeEE
Q 000961 70 GDDYKIKVWNYKMHRC-----LFTLLGH-----LDYIRTVQFH----HEYPW-IVSASDDQTIRIWNWQS------RTCI 128 (1208)
Q Consensus 70 s~Dg~I~vWd~~~~~~-----~~~l~~h-----~~~I~~v~fs----~d~~~-l~s~s~Dg~I~iwd~~s------~~~i 128 (1208)
+.||.|++||+.+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999999998887 8888888 5999999999 99999 99999999999999988 6665
Q ss_pred E-----EE-------ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceE
Q 000961 129 S-----VL-------TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1208)
Q Consensus 129 ~-----~l-------~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1208)
. .+ ..|...|.+++|+|++ ++++++.||.|++||+++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--------------------------- 219 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP--------------------------- 219 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE---------------------------
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce---------------------------
Confidence 5 66 4488999999999999 999999999999999976432
Q ss_pred EEEEec---c---CCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeecC-------------cCCCeEEE
Q 000961 197 KYVLEG---H---DRGVNWAAFHPTLPLIVSGADD---RQVKLWRMNETKAWEVDTLRG-------------HMNNVSCV 254 (1208)
Q Consensus 197 ~~~~~~---h---~~~V~~l~~sp~g~~L~sgs~d---g~I~iwd~~~~~~~~~~~l~~-------------h~~~V~~l 254 (1208)
...+.. | ...|.+++|+|++++|++++.| |.|++||+.+.+. +..+.+ |...|.++
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEE
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCcEEEE
Confidence 234556 8 8999999999999999999999 9999999998886 677777 99999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee------cC---------------CCCEEEEEEeCCC----------C
Q 000961 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR------RE---------------HDRFWILASHPEM----------N 303 (1208)
Q Consensus 255 ~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~------~~---------------~~~i~~la~sp~~----------~ 303 (1208)
+|+|++++|++++.||.|++||+.+++.+..+. .+ ...|++++|+|++ +
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 377 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE 377 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccc
Confidence 999999999999999999999999999999998 77 8899999999998 6
Q ss_pred EEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCC
Q 000961 304 LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ 348 (1208)
Q Consensus 304 ~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~ 348 (1208)
++++++. |+.|++|++.+|
T Consensus 378 ~l~s~~~--------------------------dg~i~iw~~~~g 396 (397)
T 1sq9_A 378 SLCCVCL--------------------------DRSIRWFREAGG 396 (397)
T ss_dssp EEEEEET--------------------------TTEEEEEEEEC-
T ss_pred eEEEecC--------------------------CCcEEEEEcCCC
Confidence 7887773 667788887765
No 49
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.5e-33 Score=337.43 Aligned_cols=321 Identities=21% Similarity=0.422 Sum_probs=273.5
Q ss_pred eEeecCCCCE-EEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 3 TKFETKSNRV-KGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 3 ~~l~~h~~~V-~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
..+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+..+.+|.++|++++|+|++ +|++|+.||+|++||+.
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 4789999885 66666 56799999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEc--CCCCEEEEEECCCcEEEEECCCCe-----------------------EEEEEecCCC
Q 000961 82 MHRCLFTLLGHLDYIRTVQFH--HEYPWIVSASDDQTIRIWNWQSRT-----------------------CISVLTGHNH 136 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs--~d~~~l~s~s~Dg~I~iwd~~s~~-----------------------~i~~l~~h~~ 136 (1208)
+++++..+.+|...|.+++|+ ++++++++++.||+|++||+.++. .+..+.+|..
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 999999999999999999998 577899999999999999998765 3556788999
Q ss_pred CEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC
Q 000961 137 YVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1208)
Q Consensus 137 ~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 216 (1208)
.|.++ +++++++++++.||.|++||+.+.+. ...+.+|...|.+++|+|++
T Consensus 272 ~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC---------------------------LYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp CEEEE--EEETTEEEEEETTSCEEEEETTTTEE---------------------------EEEECCCSSCEEEEEEETTT
T ss_pred eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEecCCCCCEEEEEEcCCC
Confidence 88887 57789999999999999999976442 33667899999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEE
Q 000961 217 PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWIL 296 (1208)
Q Consensus 217 ~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~l 296 (1208)
+++++|+.||.|++||+.+++. +..+.+|...|.++.|+ ++++++++.||.|++||+.++....... +...+..+
T Consensus 323 ~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~ 397 (464)
T 3v7d_B 323 KRCISASMDTTIRIWDLENGEL--MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAIT 397 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEE
T ss_pred CEEEEEeCCCcEEEEECCCCcE--EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEE
Confidence 9999999999999999999886 78899999999999997 5899999999999999999887666554 55667788
Q ss_pred EEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCC
Q 000961 297 ASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT 376 (1208)
Q Consensus 297 a~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 376 (1208)
+++|+++++++|+ ++.|++||+.+++.+..... ++ ...|.+++|+
T Consensus 398 ~~~~~~~~l~~~~---------------------------dg~i~iwd~~~g~~~~~~~~---~~---~~~v~~v~~~-- 442 (464)
T 3v7d_B 398 TFYVSDNILVSGS---------------------------ENQFNIYNLRSGKLVHANIL---KD---ADQIWSVNFK-- 442 (464)
T ss_dssp EEEECSSEEEEEE---------------------------TTEEEEEETTTCCEEESCTT---TT---CSEEEEEEEE--
T ss_pred EEEeCCCEEEEec---------------------------CCeEEEEECCCCcEEehhhc---cC---CCcEEEEEec--
Confidence 9999999888887 56788999988876542211 22 3389999997
Q ss_pred CCEEEEEEecCCCEEEEEEc
Q 000961 377 ENAVLICSDVDGGSYELYVI 396 (1208)
Q Consensus 377 g~~llv~~~~~~g~v~l~~l 396 (1208)
++.++++++ +++.+.+|.+
T Consensus 443 ~~~l~~~~~-~~g~~~i~~l 461 (464)
T 3v7d_B 443 GKTLVAAVE-KDGQSFLEIL 461 (464)
T ss_dssp TTEEEEEEE-ETTEEEEEEE
T ss_pred CCEEEEEEE-eCCeEEEEEe
Confidence 566665554 5566655543
No 50
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=320.54 Aligned_cols=287 Identities=21% Similarity=0.337 Sum_probs=256.4
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
++.|.+|.+.|++++| |++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|++.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 5689999999999999 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC---eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEee-CCCEEEEEECCC
Q 000961 82 MH---RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQ 157 (1208)
Q Consensus 82 ~~---~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg 157 (1208)
.. +.+..+.+|...|.++.| ++..+++++.||.|++|| .++.+..+..|...+.++.|+| +++.+++++.||
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 165 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADK 165 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence 54 667888999999999999 567999999999999999 7888899999999999999999 889999999999
Q ss_pred eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000961 158 TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 236 (1208)
Q Consensus 158 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~ 236 (1208)
.|++||... ....+.. |...+.+++|+|++. +++++.||.|++||+.++
T Consensus 166 ~i~i~d~~~-----------------------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 166 TIKLWQNDK-----------------------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp CEEEEETTE-----------------------------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred CEEEEecCc-----------------------------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence 999999432 1223444 889999999999988 999999999999999998
Q ss_pred ceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeE
Q 000961 237 KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF 316 (1208)
Q Consensus 237 ~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~ 316 (1208)
+. +..+.+|...|++++|+|++ .+++++.||.|++||+.+++.+..+..+...+++++|+|++++++ ++
T Consensus 216 ~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~------- 284 (313)
T 3odt_A 216 DV--LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV-GS------- 284 (313)
T ss_dssp CE--EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEE-EE-------
T ss_pred hh--hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEE-Ee-------
Confidence 86 77888999999999999999 589999999999999999999999999999999999999999665 44
Q ss_pred eeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 317 KLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 317 ~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
.|+.|++|++.+++....
T Consensus 285 -------------------~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 285 -------------------SDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp -------------------TTSCEEEEESCGGGCCC-
T ss_pred -------------------CCCcEEEEeCCCCceeeh
Confidence 256677888777655443
No 51
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.2e-34 Score=329.10 Aligned_cols=244 Identities=20% Similarity=0.257 Sum_probs=214.0
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEE----ecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR----FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~----l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~ 82 (1208)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++.+.. +.+|.+.|++++|+|++++|++|+.|++|++||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 456789999999986 678999999999999998875543 348999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEEe--cCCCCEEEEEEeeCC-CEEEEEECCCe
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVMCASFHPKE-DLVVSASLDQT 158 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~l~--~h~~~V~~l~~~p~~-~~l~s~s~Dg~ 158 (1208)
++++.++.+|.+.|.+++|++++. .|++++.|++|++||++++++...+. .|...+.+++|+|++ +++++|+.||+
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 999999999999999999999985 78999999999999999999888774 456679999999964 78999999999
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETK 237 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~L~sgs~dg~I~iwd~~~~~ 237 (1208)
|++||+++.+.. ..+.+|...|++++|+|++ ++|++|+.|++|++||+.+++
T Consensus 239 v~~wd~~~~~~~---------------------------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 239 VSLVDTKSTSCV---------------------------LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp EEEEESCC--CC---------------------------EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred EEEEECCCCcEE---------------------------EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence 999999875432 2677899999999999998 579999999999999999887
Q ss_pred eeEEEeecCcCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe
Q 000961 238 AWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 238 ~~~~~~l~~h~~~V~~l~~sp~g~-~l~sgs~dg~I~vwd~~~~~ 281 (1208)
+..+.+|.+.|++++|+|++. +|++++.||+|++|++.+..
T Consensus 292 ---~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 292 ---LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ---EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred ---EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 456789999999999999886 67799999999999997643
No 52
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=294.01 Aligned_cols=173 Identities=38% Similarity=0.620 Sum_probs=163.0
Q ss_pred hhccccCcchhhHHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHH
Q 000961 629 ALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLS 708 (1208)
Q Consensus 629 Al~~~~~~~~~f~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~ 708 (1208)
|+++++||++||++|+++||+++|+++|++++++..|++||+.||.+||+++|++||+++||+++++|||.++||.++++
T Consensus 1 AL~~~~D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 1 ALQFVQDPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp CCTTSSCHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH
T ss_pred CccccCChHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCCCC--CCCCCCCCcCC
Q 000961 709 KMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNVPS--VPEGKAPSLLM 786 (1208)
Q Consensus 709 k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~~~--~~~~~~~~~~~ 786 (1208)
+|+++++.+|+++.+|++++++||+++|+++|.++|++++|+.+|++||..+.|++|++++++++++ +|+...+.+..
T Consensus 81 kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~~ 160 (177)
T 3mkq_B 81 KMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVDEQDVTLPDQMDASNFV 160 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHTTCCGGGCCCCSCCCCSCCS
T ss_pred HHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHHHHhCCccccccCCCcCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 88876655435
Q ss_pred CCCcc-cCCCCCCccc
Q 000961 787 PPSPV-VCSGDWPLLR 801 (1208)
Q Consensus 787 ~~~~~-~~~~~wp~~~ 801 (1208)
||+|+ ....|||+++
T Consensus 161 p~~~~~~~~~nwp~~~ 176 (177)
T 3mkq_B 161 QRPVISKPLEKWPLKE 176 (177)
T ss_dssp CCCCCSSCCSSCCBCC
T ss_pred CCCCCCCCCCCCCCCC
Confidence 55555 3459999975
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.8e-33 Score=358.12 Aligned_cols=277 Identities=24% Similarity=0.420 Sum_probs=241.6
Q ss_pred eEeecCCCCEEEEEEeCCC-CEEEEEecCCeEEEEECCC-----CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEE
Q 000961 3 TKFETKSNRVKGLSFHSKR-PWILASLHSGVIQLWDYRM-----GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg-~~Lasg~~dg~I~iWd~~~-----g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~ 76 (1208)
..+++|.+.|++++|+|++ ++|++|+.||+|+|||+.+ +.....+.+|...|++++|+|++++|++|+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3689999999999999865 7999999999999999875 345678889999999999999999999999999999
Q ss_pred EEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCEEEEEEeeCC--CEEE
Q 000961 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMCASFHPKE--DLVV 151 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l---~~h~~~V~~l~~~p~~--~~l~ 151 (1208)
|||+.+++++..+.+|...|.+++|+|++++|++++.|++|++||.......... .+|...|.+++|+|++ ..++
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 535 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence 9999999999999999999999999999999999999999999998765443332 3688899999999987 6899
Q ss_pred EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 000961 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1208)
Q Consensus 152 s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iw 231 (1208)
+++.|++|++||+++.+ ....+.+|...|++++|+|++++|++|+.||.|++|
T Consensus 536 s~s~d~~v~vwd~~~~~---------------------------~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iw 588 (694)
T 3dm0_A 536 SASWDKTVKVWNLSNCK---------------------------LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588 (694)
T ss_dssp EEETTSCEEEEETTTCC---------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEE
T ss_pred EEeCCCeEEEEECCCCc---------------------------EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 99999999999997643 233678899999999999999999999999999999
Q ss_pred ECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCC-------------------C
Q 000961 232 RMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-------------------R 292 (1208)
Q Consensus 232 d~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-------------------~ 292 (1208)
|+.+++. +..+. +...|.+++|+|++.++++++ ++.|++||+.++..+..+..+.. .
T Consensus 589 d~~~~~~--~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 589 DLAEGKK--LYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp ETTTTEE--EECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred ECCCCce--EEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 9999886 55554 456799999999999888776 45699999999988877653221 2
Q ss_pred EEEEEEeCCCCEEEEEEC
Q 000961 293 FWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 293 i~~la~sp~~~~la~g~~ 310 (1208)
+++++|+|++++|++|+.
T Consensus 665 ~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 665 CTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp EEEEEECTTSSEEEEEET
T ss_pred eeeEEEcCCCCEEEEEcC
Confidence 678999999999999884
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.2e-33 Score=320.29 Aligned_cols=303 Identities=21% Similarity=0.312 Sum_probs=250.3
Q ss_pred CCCeEEEEecccccCEEEEEEEcC-CCEEEEEECCCeEEEEECCCC-----eEEEEEccCCCCEEEEEEcCCCCEEEEEE
Q 000961 39 RMGTLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMH-----RCLFTLLGHLDYIRTVQFHHEYPWIVSAS 112 (1208)
Q Consensus 39 ~~g~~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~~-----~~~~~l~~h~~~I~~v~fs~d~~~l~s~s 112 (1208)
++.++..++++|.++|++|+|+|+ +++|+||+.|++|+|||+.+. .+..++.+|...|.+++|+|++++|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 444666789999999999999998 579999999999999998754 35678899999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccc
Q 000961 113 DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192 (1208)
Q Consensus 113 ~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1208)
.|+.|++|+............+...+....+++++++|++++.|+.+++||.......
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~---------------------- 163 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY---------------------- 163 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE----------------------
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE----------------------
Confidence 9999999999999999999999999999999999999999999999999998763321
Q ss_pred cceEEEEEeccCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC
Q 000961 193 DAVVKYVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK 270 (1208)
Q Consensus 193 ~~~~~~~~~~h~~~V~~l~~sp~g--~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg 270 (1208)
.....+|...+..++|++++ .++++++.|+.|++||+.+.+. ...+.+|...|++++|+|++++|++++.||
T Consensus 164 ----~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 164 ----TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp ----EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred ----EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce--eeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 22455788999999998864 5789999999999999999887 778899999999999999999999999999
Q ss_pred cEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc
Q 000961 271 SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (1208)
Q Consensus 271 ~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~ 350 (1208)
.|++||+.+.+.+..+.. ...+.++.++|++.+++++. ++.|++||+.++..
T Consensus 238 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~---------------------------d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT---------------------------GPSIKIWDLEGKII 289 (340)
T ss_dssp EEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEE---------------------------TTEEEEEETTTTEE
T ss_pred eEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccC---------------------------CCEEEEEECCCCeE
Confidence 999999999999888774 46799999999988877665 56677888765443
Q ss_pred eeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEE
Q 000961 351 TQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLD 430 (1208)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~ 430 (1208)
...... .... .....|...|++++|+|++++++++
T Consensus 290 ~~~~~~---------------------~~~~------------------------~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 290 VDELKQ---------------------EVIS------------------------TSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp EEEECC---------------------C-------------------------------CCCCCEEEEEECTTSSEEEEE
T ss_pred EEeccc---------------------ccee------------------------eeccCCCCCEEEEEECCCCCEEEEE
Confidence 221100 0000 0123556667777777777777777
Q ss_pred cCCCEEEEEecC
Q 000961 431 KSSNQVLVKNLK 442 (1208)
Q Consensus 431 ~~dg~I~Iwdl~ 442 (1208)
+.||+|+|||+.
T Consensus 325 s~Dg~v~iW~~~ 336 (340)
T 4aow_A 325 YTDNLVRVWQVT 336 (340)
T ss_dssp ETTSCEEEEEEE
T ss_pred eCCCEEEEEeCC
Confidence 777777777776
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-32 Score=331.54 Aligned_cols=325 Identities=23% Similarity=0.424 Sum_probs=279.9
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
.+.+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+.+|.++|.+++|+ ++++++|+.||+|++||+.
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 3568999998643 355568999999999999999999999999999999999999998 5699999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
+++++.++.+|...|.++.|+ ++.+++++.||+|++||+.+++.+..+.+|...|.++.| +++++++++.||.|++
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence 999999999999999999996 567999999999999999999999999999999999999 6789999999999999
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~ 241 (1208)
||+.+.+ ....+.+|...|.+++| ++.++++++.||.|++||+.+++. +
T Consensus 264 wd~~~~~---------------------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~--~ 312 (445)
T 2ovr_B 264 WDPETET---------------------------CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC--I 312 (445)
T ss_dssp EEGGGTE---------------------------EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE--E
T ss_pred EECCCCc---------------------------EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE--E
Confidence 9987643 23366789999999999 788999999999999999999887 7
Q ss_pred EeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec---CCCCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR---EHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~---~~~~i~~la~sp~~~~la~g~~~gi~v~~l 318 (1208)
..+.+|...+.++.++ ++++++++.||.|++||+.+++.+..+.. +...+.+++++ ++++++|+
T Consensus 313 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--------- 379 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS--------- 379 (445)
T ss_dssp EEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE---------
T ss_pred EEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe---------
Confidence 7888999999988875 67999999999999999999999999886 67789999985 57888887
Q ss_pred CCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecC-CCCCCCCcCCeEEEEcCCCCEEEEEEecCCCE----EEE
Q 000961 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRR-PGSTSLNQSPRTLSYSPTENAVLICSDVDGGS----YEL 393 (1208)
Q Consensus 319 ~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~----v~l 393 (1208)
.|+.|++||+.+++....+.... .++ ...+.+++|+|++..++++ +.+|. +.+
T Consensus 380 -----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~la~~--~~dg~~~~~l~v 437 (445)
T 2ovr_B 380 -----------------DDGTVKLWDLKTGEFIRNLVTLESGGS---GGVVWRIRASNTKLVCAVG--SRNGTEETKLLV 437 (445)
T ss_dssp -----------------TTSEEEEEETTTCCEEEEEEECTTGGG---TCEEEEEEECSSEEEEEEE--CSSSSSCCEEEE
T ss_pred -----------------CCCeEEEEECCCCceeeeeeccccCCC---CceEEEEEecCCEEEEEEc--ccCCCCccEEEE
Confidence 47789999999988765543221 122 3489999999998866543 34554 999
Q ss_pred EEccCC
Q 000961 394 YVIPKD 399 (1208)
Q Consensus 394 ~~l~~~ 399 (1208)
|++..+
T Consensus 438 ~df~~~ 443 (445)
T 2ovr_B 438 LDFDVD 443 (445)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998754
No 56
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-34 Score=334.69 Aligned_cols=320 Identities=15% Similarity=0.166 Sum_probs=233.3
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC------CCeEEEEECCCCe
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD------DYKIKVWNYKMHR 84 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~------Dg~I~vWd~~~~~ 84 (1208)
.=.++.+.+++.++.+. .+.....|++.... ...|+..|++++|||||++|++|+. |+.|++|+..++.
T Consensus 7 ~~sg~d~g~~~~~~~~~-g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 7 HSSGVDLGTENLYFQSN-GSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp --------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred cccCCCCCccceEEecC-CCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 34456677777665554 46678999875433 3479999999999999999999997 7889999987765
Q ss_pred EE----EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE----EEecCCCCEEEEEEeeCCCEEEEEECC
Q 000961 85 CL----FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS----VLTGHNHYVMCASFHPKEDLVVSASLD 156 (1208)
Q Consensus 85 ~~----~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~----~l~~h~~~V~~l~~~p~~~~l~s~s~D 156 (1208)
.. ....+|...|.+++|+|++. +++++.||+|++||+.+++... ...+|...|++++|+|++++|++++.|
T Consensus 82 ~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 82 PNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp -CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred cceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 32 34456899999999999985 6678899999999998876543 345799999999999999999999999
Q ss_pred CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 000961 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 157 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~ 235 (1208)
|+|++||+.+.+. ...+.+|...|++++|+|++. ++++++.||.|++||+.+
T Consensus 161 g~v~iwd~~~~~~---------------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~ 213 (357)
T 4g56_B 161 FSVKVWDLSQKAV---------------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213 (357)
T ss_dssp SCEEEEETTTTEE---------------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred CeEEEEECCCCcE---------------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence 9999999987442 346778999999999999875 789999999999999998
Q ss_pred CceeEEEeecCcCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCC-CEEEEEECCCe
Q 000961 236 TKAWEVDTLRGHMNNVSCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEM-NLLAAGHDSGM 313 (1208)
Q Consensus 236 ~~~~~~~~l~~h~~~V~~l~~sp~-g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~-~~la~g~~~gi 313 (1208)
++.........|...+++++|+|+ +.+|++|+.|+.|++||+.+++.+.++..+...|++++|+|++ ++|++|+
T Consensus 214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs---- 289 (357)
T 4g56_B 214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS---- 289 (357)
T ss_dssp SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE----
T ss_pred CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe----
Confidence 876444455667888999999997 5689999999999999999999999999999999999999987 5788887
Q ss_pred eeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcC-CCCEEEEEEecCCCEEE
Q 000961 314 IVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSP-TENAVLICSDVDGGSYE 392 (1208)
Q Consensus 314 ~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~llv~~~~~~g~v~ 392 (1208)
.|+.|++||+.+++.... .+| ...|++++|+| ++..++. ++.|++|+
T Consensus 290 ----------------------~D~~i~iwd~~~~~~~~~-----~~H---~~~V~~vafsP~d~~~l~s--~s~Dg~v~ 337 (357)
T 4g56_B 290 ----------------------EDCTVAVLDADFSEVFRD-----LSH---RDFVTGVAWSPLDHSKFTT--VGWDHKVL 337 (357)
T ss_dssp ----------------------TTSCEEEECTTSCEEEEE-----CCC---SSCEEEEEECSSSTTEEEE--EETTSCEE
T ss_pred ----------------------CCCEEEEEECCCCcEeEE-----CCC---CCCEEEEEEeCCCCCEEEE--EcCCCeEE
Confidence 477899999988765432 234 33999999999 6776543 33688999
Q ss_pred EEEccCC
Q 000961 393 LYVIPKD 399 (1208)
Q Consensus 393 l~~l~~~ 399 (1208)
+|+++..
T Consensus 338 iW~~~~~ 344 (357)
T 4g56_B 338 HHHLPSE 344 (357)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 9999764
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-35 Score=356.63 Aligned_cols=350 Identities=12% Similarity=0.105 Sum_probs=253.3
Q ss_pred CCCCEEEEEEeCCC---------CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEE
Q 000961 8 KSNRVKGLSFHSKR---------PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 8 h~~~V~~lafspdg---------~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1208)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++.|++++.|++|+||
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI~iW 188 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCIQIF 188 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceEEEE
Confidence 57899999999987 799999866420 0137899999999999999999
Q ss_pred ECCCCeEE----EEEccCCCCEEEEEEcCC------CCEEEEEECCCcEEEEECCCCeE-----------EEEEecCCCC
Q 000961 79 NYKMHRCL----FTLLGHLDYIRTVQFHHE------YPWIVSASDDQTIRIWNWQSRTC-----------ISVLTGHNHY 137 (1208)
Q Consensus 79 d~~~~~~~----~~l~~h~~~I~~v~fs~d------~~~l~s~s~Dg~I~iwd~~s~~~-----------i~~l~~h~~~ 137 (1208)
|+.++++. .++.+|.+.|.+++|+|+ +.+|++++.||+|++||+.++.. ...+.+|...
T Consensus 189 d~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 189 KMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp EEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred EccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 99877642 456778899999999997 57999999999999999986632 2467889999
Q ss_pred EEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEE--EEcCC
Q 000961 138 VMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA--AFHPT 215 (1208)
Q Consensus 138 V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~sp~ 215 (1208)
|++++|+|+ ..|++|+.||+|++||+++.... ...+.+|...|.++ +|+|+
T Consensus 269 v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~--------------------------~~~~~~H~~~V~sv~~~~s~~ 321 (524)
T 2j04_B 269 ITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVP--------------------------SFYDQVHDSYILSVSTAYSDF 321 (524)
T ss_dssp EEEEEESSS-SEEEEEETTSEEEEEETTBCSSC--------------------------SEEEECSSSCEEEEEEECCTT
T ss_pred EEEEEecCC-CeEEEEeCCCEEEEEECCCCCCc--------------------------eEEeecccccEEEEEEEcCCC
Confidence 999999986 48999999999999999763211 12467899999999 57888
Q ss_pred C-CEEEEEeCCCcEEEEECCCCceeEEEeecCcC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCC
Q 000961 216 L-PLIVSGADDRQVKLWRMNETKAWEVDTLRGHM--NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR 292 (1208)
Q Consensus 216 g-~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~--~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~ 292 (1208)
+ .+|++|+.|++|++||+++.+. ...+.+|. ..|.+++|+|+++.+++++.|++|++||++++.++.++..|.+.
T Consensus 322 g~~~laS~S~D~tvklWD~~~~~~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~ 399 (524)
T 2j04_B 322 EDTVVSTVAVDGYFYIFNPKDIAT--TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETT 399 (524)
T ss_dssp SCCEEEEEETTSEEEEECGGGHHH--HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSC
T ss_pred CCeEEEEeccCCeEEEEECCCCCc--ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCc
Confidence 7 8999999999999999988765 44455554 35889999999999999999999999999999988889999999
Q ss_pred EEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEE
Q 000961 293 FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLS 372 (1208)
Q Consensus 293 i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 372 (1208)
|++++|+|++++|++|+. |++|++||...+ ......-....+ . ...+.+++
T Consensus 400 V~sva~Sp~g~~l~Sgs~--------------------------Dgtv~lwd~~~~-~~~~~~~~~~~~-~-~~~v~~v~ 450 (524)
T 2j04_B 400 ITAIGVSRLHPMVLAGSA--------------------------DGSLIITNAARR-LLHGIKNSSATQ-K-SLRLWKWD 450 (524)
T ss_dssp EEEEECCSSCCBCEEEET--------------------------TTEEECCBSCSS-TTTCC------C-C-CCEEEECB
T ss_pred eEEEEeCCCCCeEEEEEC--------------------------CCEEEEEechHh-hccccccCccce-e-eeEEEEec
Confidence 999999999999999984 778888887653 111100000000 0 11456889
Q ss_pred EcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCC---cEEEEEcCCCEEEEEecCCce
Q 000961 373 YSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARN---RFAVLDKSSNQVLVKNLKNEV 445 (1208)
Q Consensus 373 ~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~---~~l~~~~~dg~I~Iwdl~~~~ 445 (1208)
|+|++..+.+ . ++ +.+|.... .+.+...+.+|.+.|.+++|+|++ .++++++.+|.|+||++.++.
T Consensus 451 ~sp~g~~~~~--~-~~--~~~~~~~~--~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 451 YSIKDDKYRI--D-SS--YEVYPLTV--NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CCSSSCEEEE--C-CC--CCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred cCCCCCeEEc--c-CC--ceeccccc--CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 9999985532 1 22 22332211 123333677899999999999996 499999999999999998653
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-33 Score=332.02 Aligned_cols=288 Identities=16% Similarity=0.263 Sum_probs=241.6
Q ss_pred ceEeecCCCCEEEEEEeCCC-CEEEEEecCCeEEEEECCCCeEEEEec--ccccCEEEEEEEc-CCCEEEEEECCCeEEE
Q 000961 2 LTKFETKSNRVKGLSFHSKR-PWILASLHSGVIQLWDYRMGTLIDRFD--EHDGPVRGVHFHK-SQPLFVSGGDDYKIKV 77 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg-~~Lasg~~dg~I~iWd~~~g~~i~~l~--~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~v 77 (1208)
+..+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|.+.|.+++|+| ++++|++++.|+.|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 45788999999999999999 999999999999999999888777765 6999999999999 7899999999999999
Q ss_pred EECCCCeEEEEEccC---CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCC-EEEEE
Q 000961 78 WNYKMHRCLFTLLGH---LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSA 153 (1208)
Q Consensus 78 Wd~~~~~~~~~l~~h---~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~-~l~s~ 153 (1208)
||+.+ ..+..+..| ...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +++++
T Consensus 146 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 146 RDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred EECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence 99986 555555444 488999999999999999999999999999 5788899999999999999999998 99999
Q ss_pred ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 000961 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 154 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd 232 (1208)
+.|++|++||+++.+... .....+ +|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 224 ~~d~~i~iwd~~~~~~~~-----------------------~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKN-----------------------SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp ETTSEEEEEEGGGCCSTT-----------------------CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred eCCCEEEEEeCCCCCccc-----------------------ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 999999999997643211 112223 6999999999999 999999999999999999
Q ss_pred CCCCceeEEEeecCc-------CC----------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec--CCCCE
Q 000961 233 MNETKAWEVDTLRGH-------MN----------NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR--EHDRF 293 (1208)
Q Consensus 233 ~~~~~~~~~~~l~~h-------~~----------~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~--~~~~i 293 (1208)
+.+.+. ...+.+| .. .+..++|+|++++ +++.||.|++||+.+++.+..+.. +...+
T Consensus 280 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 280 SYDWSK--PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355 (383)
T ss_dssp TTBTTS--CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred CCCCcc--ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence 998765 3333322 22 3444566666665 667899999999999999999886 34667
Q ss_pred EEEEEeCCCCEEEEEECCCeeeEeeC
Q 000961 294 WILASHPEMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 294 ~~la~sp~~~~la~g~~~gi~v~~l~ 319 (1208)
..++|+|++++|++|+++.+.+|++.
T Consensus 356 ~~~~~s~~g~~l~s~sd~~i~iw~~~ 381 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGMGFNILIWNRE 381 (383)
T ss_dssp CEEEECTTSSEEEEEETTEEEEEECC
T ss_pred EEEEEecCccEEEEecCCcEEEEecC
Confidence 78899999999999986555555543
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.5e-34 Score=331.13 Aligned_cols=305 Identities=17% Similarity=0.290 Sum_probs=250.1
Q ss_pred EeecCCCCEEEEEEeCC----CCEEEEEecCCeEEEEECCCCeEEEEecc-----cccCEEEEEEEcC----CCEEEEEE
Q 000961 4 KFETKSNRVKGLSFHSK----RPWILASLHSGVIQLWDYRMGTLIDRFDE-----HDGPVRGVHFHKS----QPLFVSGG 70 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspd----g~~Lasg~~dg~I~iWd~~~g~~i~~l~~-----h~~~V~~l~fsp~----~~~Lasgs 70 (1208)
..++|.++|.+++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|++++|+|+ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 56677777788999999998887776654 5578999999999 67999999
Q ss_pred CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCEEEEEEeeC
Q 000961 71 DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTCISVL---TGHNHYVMCASFHPK 146 (1208)
Q Consensus 71 ~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~-d~~~l~s~s~Dg~I~iwd~~s~~~i~~l---~~h~~~V~~l~~~p~ 146 (1208)
.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+ .+|...|.+++|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 999999999999999999999999999999999 8999999999999999999999999988 689999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccc-cccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 000961 147 EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDL-FGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD 225 (1208)
Q Consensus 147 ~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d 225 (1208)
+++|++++.||.|++||+.+.+..........+......... .............+|...|.+++|+ ++++++++.|
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 999999999999999999876543221100000000000000 0000011123455699999999999 6799999999
Q ss_pred CcEEEEECCCCce------------eEEEeecCcCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCee----EEEee
Q 000961 226 RQVKLWRMNETKA------------WEVDTLRGHMNNVSCVMFHAK--QDIIVSNSEDKSIRVWDVTKRTG----VQTFR 287 (1208)
Q Consensus 226 g~I~iwd~~~~~~------------~~~~~l~~h~~~V~~l~~sp~--g~~l~sgs~dg~I~vwd~~~~~~----~~~~~ 287 (1208)
|.|++||+.+... ..+..+..|...|++++|+|+ +++|++++.||.|++||+.+++. ...+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 9999999887643 346778889999999999999 99999999999999999998753 34666
Q ss_pred cC--CCCEEEEEEeCCCCEEEEEEC
Q 000961 288 RE--HDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 288 ~~--~~~i~~la~sp~~~~la~g~~ 310 (1208)
.+ ...|++++|+|++++|++++.
T Consensus 331 ~~~~~~~v~~~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRDSSILIAVCD 355 (366)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEET
T ss_pred ccccCCceEEEEeCCCCCeEEEEeC
Confidence 66 689999999999999999985
No 60
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-33 Score=319.00 Aligned_cols=255 Identities=19% Similarity=0.343 Sum_probs=220.9
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC--CeEEEEecccccCEEEEEEEcC--CCEEEEEECCCeEE
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM--GTLIDRFDEHDGPVRGVHFHKS--QPLFVSGGDDYKIK 76 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~--g~~i~~l~~h~~~V~~l~fsp~--~~~Lasgs~Dg~I~ 76 (1208)
|+..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+ ++.+.++.+|.++|++++|+++ +++|++|+.|++|+
T Consensus 1 ~~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp -CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred CceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 7889999999999999999999999999999999999874 4678899999999999999863 89999999999999
Q ss_pred EEECCCCe--EEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCEEEEEEeeC----
Q 000961 77 VWNYKMHR--CLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASFHPK---- 146 (1208)
Q Consensus 77 vWd~~~~~--~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s~~--~i~~l~~h~~~V~~l~~~p~---- 146 (1208)
+||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++. ....+.+|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99998874 56778899999999999998 8899999999999999998753 24567899999999999997
Q ss_pred ---------CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-
Q 000961 147 ---------EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL- 216 (1208)
Q Consensus 147 ---------~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g- 216 (1208)
+++|++|+.|++|++||+++.... ......+.+|...|.+++|+|++
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-----------------------~~~~~~l~~H~~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----------------------YVLESTLEGHSDWVRDVAWSPTVL 217 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTE-----------------------EEEEEEECCCSSCEEEEEECCCCS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-----------------------EEEEEEecCCCCceEEEEECCCCC
Confidence 479999999999999998763311 11234678999999999999985
Q ss_pred --CEEEEEeCCCcEEEEECCCCce-eEEEee--cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 217 --PLIVSGADDRQVKLWRMNETKA-WEVDTL--RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 217 --~~L~sgs~dg~I~iwd~~~~~~-~~~~~l--~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
.+|++++.|++|++||+.+... +....+ ..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 7999999999999999987431 112233 5788899999999999999999999999999975
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.3e-33 Score=327.68 Aligned_cols=307 Identities=14% Similarity=0.140 Sum_probs=256.6
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
.+..|.++|++++|+|++++|++++.+|.|++||+.+++ .+..+.+|..+|++++|+|++++|++++.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 466799999999999999999999999999999999987 888999999999999999999999999999999999999
Q ss_pred CCeEEEEE--ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE---E-EEEecCCCCEEEEEEeeCCCEEEEEEC
Q 000961 82 MHRCLFTL--LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC---I-SVLTGHNHYVMCASFHPKEDLVVSASL 155 (1208)
Q Consensus 82 ~~~~~~~l--~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~---i-~~l~~h~~~V~~l~~~p~~~~l~s~s~ 155 (1208)
+++....+ ..|...|.+++|+|++++|++++.|+.|++||+.++.. . ....+|...|.+++|+|++++|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 88755443 67999999999999999999999999999999987762 2 333678999999999999999999999
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccc--cccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG--GVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 233 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~ 233 (1208)
||.|++||+.......... ...++ .........+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 163 dg~i~~~d~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPA-----------PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp TSCEEEEECCCTTTSCCCC-----------CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred CCCEEEEEccccccccccc-----------ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999986432211100 00000 0122344566789999999999999999999999999999999
Q ss_pred CCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--Cee--E--------------------------
Q 000961 234 NETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK--RTG--V-------------------------- 283 (1208)
Q Consensus 234 ~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~--~~~--~-------------------------- 283 (1208)
.+++. +..+..|...|.+++|+|++.+++++ .|+.|++|++.+ +.. +
T Consensus 232 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMA--VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTE--EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCce--eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 98886 77888999999999999999988877 899999999987 421 0
Q ss_pred ----------EEe-ecCCCCEEEEEEe-CCC---CEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCC
Q 000961 284 ----------QTF-RREHDRFWILASH-PEM---NLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ 348 (1208)
Q Consensus 284 ----------~~~-~~~~~~i~~la~s-p~~---~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~ 348 (1208)
..+ ..|...|++++|+ +++ ++|++|+. |+.|++|++.++
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~--------------------------Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM--------------------------DGGMSIWDVRSL 362 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET--------------------------TSEEEEEEHHHH
T ss_pred cccccCccccccccccccCCcceeEEecCCCcceeeEEEecC--------------------------CCceEEEEecCh
Confidence 222 3778899999866 566 88998884 778889998775
Q ss_pred cc
Q 000961 349 KD 350 (1208)
Q Consensus 349 ~~ 350 (1208)
+.
T Consensus 363 ~~ 364 (372)
T 1k8k_C 363 ES 364 (372)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=327.33 Aligned_cols=280 Identities=15% Similarity=0.223 Sum_probs=239.2
Q ss_pred eEeecCCCCEEEEEEeCCCCEEE-EEec---CCeEEEEECCCCeEEEEe-cccccCEEEEEEEcC---CCEEEEEECCCe
Q 000961 3 TKFETKSNRVKGLSFHSKRPWIL-ASLH---SGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFHKS---QPLFVSGGDDYK 74 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~La-sg~~---dg~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp~---~~~Lasgs~Dg~ 74 (1208)
..+++|...|.+++|+|+++.++ +|+. ||.|+|||+.+++..... .+|..+|++++|+|+ +.+|++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 35678999999999999997665 5554 899999999998776543 379999999999998 699999999999
Q ss_pred EEEEECCCCe-EEEEEccCCCCEEEEEE------cCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCC----CEEEEE
Q 000961 75 IKVWNYKMHR-CLFTLLGHLDYIRTVQF------HHEYPWIVSASDDQTIRIWNWQSRT-CISVLTGHNH----YVMCAS 142 (1208)
Q Consensus 75 I~vWd~~~~~-~~~~l~~h~~~I~~v~f------s~d~~~l~s~s~Dg~I~iwd~~s~~-~i~~l~~h~~----~V~~l~ 142 (1208)
|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||+.+++ .+..+..|.+ .+.++.
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 9999999888 88999999999999954 6899999999999999999999887 7777766554 899998
Q ss_pred ----EeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC---C
Q 000961 143 ----FHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP---T 215 (1208)
Q Consensus 143 ----~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---~ 215 (1208)
|+|+++++++++.||.|++||+++.+. .....|...|.+++|+| +
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------------------~~~~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMAL----------------------------RWETNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTEE----------------------------EEEEECSSCEEEEEESCSSSS
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCce----------------------------eeecCCCCceEEEEcCCCCCC
Confidence 678999999999999999999987442 13456889999999999 9
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee---EEEeecCcCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-----------
Q 000961 216 LPLIVSGADDRQVKLWRMNETKAW---EVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKR----------- 280 (1208)
Q Consensus 216 g~~L~sgs~dg~I~iwd~~~~~~~---~~~~l~~h~~~V~~l~~sp~g~-~l~sgs~dg~I~vwd~~~~----------- 280 (1208)
+.++++++.||.|++||+.+.+.. ....+.+|...|++++|+|+++ ++++++.||.|++||+.++
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~ 303 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSC
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCC
Confidence 999999999999999999876541 1223458999999999999998 8999999999999998754
Q ss_pred --------eeEEEeecCCCCEEEEEEeCCCCEEE-EEEC
Q 000961 281 --------TGVQTFRREHDRFWILASHPEMNLLA-AGHD 310 (1208)
Q Consensus 281 --------~~~~~~~~~~~~i~~la~sp~~~~la-~g~~ 310 (1208)
+.+..+..|...|++++|+|++++++ +++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~ 342 (357)
T 3i2n_A 304 EMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF 342 (357)
T ss_dssp CCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET
T ss_pred ccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC
Confidence 45677888999999999999999888 6763
No 63
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-32 Score=321.19 Aligned_cols=300 Identities=23% Similarity=0.394 Sum_probs=246.8
Q ss_pred eEEEEECCCCeE-----EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCC------------
Q 000961 32 VIQLWDYRMGTL-----IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD------------ 94 (1208)
Q Consensus 32 ~I~iWd~~~g~~-----i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~------------ 94 (1208)
...+|+....+. ...+ +|.+.|++++|+|+|++|++|+ ++.+++|++.+++.+..+..|..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 118 (393)
T 1erj_A 41 YYILYNPALPREIDVELHKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118 (393)
T ss_dssp CEEEECTTSCCCEEEEEEEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------
T ss_pred eEEEECCCCCcccCceeEEec-CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccc
Confidence 344776544322 2233 6999999999999999999976 68999999999999888866542
Q ss_pred ------CEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 000961 95 ------YIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1208)
Q Consensus 95 ------~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~ 168 (1208)
.|++++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+.+
T Consensus 119 ~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred cCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 49999999999999999999999999999999999999999999999999999999999999999999998744
Q ss_pred cccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEee---
Q 000961 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTL--- 244 (1208)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l--- 244 (1208)
.. ..+ .+...+.+++|+| ++.+|++|+.||.|++||+.++.. +..+
T Consensus 199 ~~---------------------------~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~--~~~~~~~ 248 (393)
T 1erj_A 199 CS---------------------------LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL--VERLDSE 248 (393)
T ss_dssp EE---------------------------EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE--EEEEC--
T ss_pred eE---------------------------EEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE--EEeeccc
Confidence 22 122 3567899999999 899999999999999999998875 3333
Q ss_pred ----cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC------------eeEEEeecCCCCEEEEEEeCCCCEEEEE
Q 000961 245 ----RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR------------TGVQTFRREHDRFWILASHPEMNLLAAG 308 (1208)
Q Consensus 245 ----~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~------------~~~~~~~~~~~~i~~la~sp~~~~la~g 308 (1208)
.+|...|++++|+|++++|++++.||+|++||+.+. .+...+..|.+.+.+++++|++.++++|
T Consensus 249 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 328 (393)
T 1erj_A 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328 (393)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEE
Confidence 579999999999999999999999999999998753 3455677888999999999999999998
Q ss_pred ECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcC------CCCEEEE
Q 000961 309 HDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSP------TENAVLI 382 (1208)
Q Consensus 309 ~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------dg~~llv 382 (1208)
+. |+.|++||..+++....+ . +| ...|.+++|++ +++.++
T Consensus 329 s~--------------------------D~~v~iwd~~~~~~~~~l--~--~h---~~~v~~v~~~~~~~~~p~~~~l~- 374 (393)
T 1erj_A 329 SK--------------------------DRGVLFWDKKSGNPLLML--Q--GH---RNSVISVAVANGSSLGPEYNVFA- 374 (393)
T ss_dssp ET--------------------------TSEEEEEETTTCCEEEEE--E--CC---SSCEEEEEECSSCTTCTTCEEEE-
T ss_pred eC--------------------------CCeEEEEECCCCeEEEEE--C--CC---CCCEEEEEecCCcCcCCCCCEEE-
Confidence 84 778999999988765433 3 23 23899999886 455443
Q ss_pred EEecCCCEEEEEEccC
Q 000961 383 CSDVDGGSYELYVIPK 398 (1208)
Q Consensus 383 ~~~~~~g~v~l~~l~~ 398 (1208)
+++.|+.+++|++..
T Consensus 375 -sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 375 -TGSGDCKARIWKYKK 389 (393)
T ss_dssp -EEETTSEEEEEEEEE
T ss_pred -EECCCCcEEECcccc
Confidence 344789999999864
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.1e-33 Score=331.82 Aligned_cols=326 Identities=14% Similarity=0.149 Sum_probs=262.4
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT 132 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~ 132 (1208)
.+++++|+|++++|++++.||.|++||+.+++....+..| ..+....|++++++|++++.||.|++||+.+++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3558999999999999999999999999988776666655 555666889999999999999999999999999998888
Q ss_pred cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEE
Q 000961 133 GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF 212 (1208)
Q Consensus 133 ~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 212 (1208)
+|...|.+++|+|++++|++++.|++|++||+.+.+.. ..+.+|...|.+++|
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~---------------------------~~~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP---------------------------RTLIGHRATVTDIAI 189 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC---------------------------EEEECCSSCEEEEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc---------------------------eEEcCCCCcEEEEEE
Confidence 99999999999999999999999999999999875432 256789999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeecC---cCCCe---------------------EEEEEccCCCEEEEEeC
Q 000961 213 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG---HMNNV---------------------SCVMFHAKQDIIVSNSE 268 (1208)
Q Consensus 213 sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~---h~~~V---------------------~~l~~sp~g~~l~sgs~ 268 (1208)
+|++++|++++.||.|++||+.+++. +..+.. |...+ .+++|+|++++|++++.
T Consensus 190 ~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (420)
T 3vl1_A 190 IDRGRNVLSASLDGTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV 267 (420)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred cCCCCEEEEEcCCCcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC
Confidence 99999999999999999999998876 445543 33344 44555789999999999
Q ss_pred CCcEEEEeCCCCeeEEEeec-CCCCEEEEEEeCCCC-EEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEcc
Q 000961 269 DKSIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMN-LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS 346 (1208)
Q Consensus 269 dg~I~vwd~~~~~~~~~~~~-~~~~i~~la~sp~~~-~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~ 346 (1208)
||.|++||+.+++.+..+.. +...+++++|+|++. ++++|+. ++.|++||+.
T Consensus 268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~--------------------------dg~i~vwd~~ 321 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE--------------------------NGMLAQWDLR 321 (420)
T ss_dssp TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET--------------------------TSEEEEEETT
T ss_pred CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC--------------------------CCeEEEEEcC
Confidence 99999999999988777654 677899999999998 8998884 7789999998
Q ss_pred CCcc-eeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCC------CcccccccCCceEEEE
Q 000961 347 TQKD-TQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGR------GDSVQDAKKGLGGSAI 419 (1208)
Q Consensus 347 ~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~------~~~~~~~~~~~i~~~~ 419 (1208)
+++. ...+... . ...+.++.+ ++++.++ +++.|+.+++|++....... .......+.+.+.+++
T Consensus 322 ~~~~~~~~~~~~-~-----~~~v~~~~~-~~~~~l~--s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 392 (420)
T 3vl1_A 322 SPECPVGEFLIN-E-----GTPINNVYF-AAGALFV--SSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC 392 (420)
T ss_dssp CTTSCSEEEEES-T-----TSCEEEEEE-ETTEEEE--EETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred CCcCchhhhhcc-C-----CCCceEEEe-CCCCEEE--EecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence 8654 2222221 1 226777755 5666443 34578999999988643221 1113456777899999
Q ss_pred EEeCCc---EEEEEcCCCEEEEEecCC
Q 000961 420 FIARNR---FAVLDKSSNQVLVKNLKN 443 (1208)
Q Consensus 420 fs~d~~---~l~~~~~dg~I~Iwdl~~ 443 (1208)
|+|+++ .+++.+.+|.+.+|++++
T Consensus 393 ~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 393 YVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EccCCCCcceEEEEcCCceEEEEeccC
Confidence 999998 444445589999999864
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.2e-33 Score=338.80 Aligned_cols=292 Identities=17% Similarity=0.253 Sum_probs=236.7
Q ss_pred ceEeecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeE--EEEecccccCEEEEEEEc-CCCEEEEEECCCeEEE
Q 000961 2 LTKFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKV 77 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g~~--i~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~v 77 (1208)
.....+|..+|+||+||| ++.+||+|+.||.|+|||+.+++. ...+.+|.++|++|+|+| ++.+|++|+.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 356778999999999999 567999999999999999987754 445668999999999998 6889999999999999
Q ss_pred EECCCCeEEEEEcc--CCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCC-EEEEEE
Q 000961 78 WNYKMHRCLFTLLG--HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED-LVVSAS 154 (1208)
Q Consensus 78 Wd~~~~~~~~~l~~--h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~-~l~s~s 154 (1208)
||++++........ +...+.+++|+|++.+|++|+.||+|++||+.+ +.+..+.+|...|.+++|+|++. ++++++
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEec
Confidence 99987655444433 344678999999999999999999999999864 56778889999999999999875 788999
Q ss_pred CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000961 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (1208)
Q Consensus 155 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~ 234 (1208)
.|++|++||++..+..... ....+|...|++++|+|+|.+|++++.||.|++||+.
T Consensus 271 ~d~~v~iwd~~~~~~~~~~------------------------~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASF------------------------LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp TTSBCCEEETTTCCSSSCC------------------------SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred CcceeeEEecccccccceE------------------------EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 9999999999875533211 1235789999999999999999999999999999999
Q ss_pred CCceeEEEeecCcCC------CeEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCeeEEEee-cCCCCEEE
Q 000961 235 ETKAWEVDTLRGHMN------NVSCVMFHAKQDIIVSNS------------EDKSIRVWDVTKRTGVQTFR-REHDRFWI 295 (1208)
Q Consensus 235 ~~~~~~~~~l~~h~~------~V~~l~~sp~g~~l~sgs------------~dg~I~vwd~~~~~~~~~~~-~~~~~i~~ 295 (1208)
++.. ...+..|.. .+....|+|++..+++++ .++.|++||..+++.+..+. .|...|.+
T Consensus 327 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s 404 (435)
T 4e54_B 327 QWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404 (435)
T ss_dssp SSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCC
T ss_pred CCcc--ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEE
Confidence 8876 444444432 234567888887777764 23579999999999888765 56667777
Q ss_pred E-EEeCCCCEEEEEECCCeeeEeeCC
Q 000961 296 L-ASHPEMNLLAAGHDSGMIVFKLER 320 (1208)
Q Consensus 296 l-a~sp~~~~la~g~~~gi~v~~l~~ 320 (1208)
+ +|+|+|++|++|+++.+.+|++..
T Consensus 405 ~~~fspdg~~lasg~d~~i~iW~~~~ 430 (435)
T 4e54_B 405 LNEFNPMGDTLASAMGYHILIWSQQE 430 (435)
T ss_dssp EEEECTTSSCEEEECSSEEEECCCC-
T ss_pred EEEECCCCCEEEEEcCCcEEEEECCc
Confidence 6 699999999998865555555543
No 66
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-32 Score=348.68 Aligned_cols=311 Identities=21% Similarity=0.325 Sum_probs=250.1
Q ss_pred EEEEecccccCEEEEEEEcCC-CEEEEEECCCeEEEEECCC-----CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCc
Q 000961 43 LIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKM-----HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQT 116 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~-----~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~ 116 (1208)
....+.+|.+.|++++|+|++ .+|+||+.|++|++||+.+ +.....+.+|...|.+++|+|++++|++|+.||+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345678999999999999875 6999999999999999875 3456788999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceE
Q 000961 117 IRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1208)
Q Consensus 117 I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1208)
|++||+.+++++..+.+|...|.+++|+|++++|++++.|++|++||..+.......
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~----------------------- 510 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS----------------------- 510 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-----------------------
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec-----------------------
Confidence 999999999999999999999999999999999999999999999997653221100
Q ss_pred EEEEeccCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000961 197 KYVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 197 ~~~~~~h~~~V~~l~~sp~g--~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~v 274 (1208)
....+|...|.+++|+|++ ..+++++.|+.|++||+.+.+. ...+.+|.+.|++++|+|++++|++++.||+|++
T Consensus 511 -~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~i 587 (694)
T 3dm0_A 511 -EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587 (694)
T ss_dssp -SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEE
T ss_pred -cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 0123688899999999986 6899999999999999999886 7788999999999999999999999999999999
Q ss_pred EeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeE
Q 000961 275 WDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (1208)
Q Consensus 275 wd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~ 354 (1208)
||+.+++.+..+. +...+.+++|+|++.+++++.+ +.|++||+.+++.+..+
T Consensus 588 wd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~---------------------------~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 588 WDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAATE---------------------------HGIKIWDLESKSIVEDL 639 (694)
T ss_dssp EETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEET---------------------------TEEEEEETTTTEEEEEE
T ss_pred EECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEcC---------------------------CCEEEEECCCCCChhhh
Confidence 9999999887765 4567999999999999988874 44667777766554332
Q ss_pred eecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCC
Q 000961 355 PIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSN 434 (1208)
Q Consensus 355 ~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg 434 (1208)
....... ....+. . +.. ....+...+++++|+|+|++|++++.||
T Consensus 640 ~~~~~~~----------~~~~~~-------~---~~~---------------~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 640 KVDLKAE----------AEKADN-------S---GPA---------------ATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp CCCCC---------------------------------------------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccc----------cccccc-------c---ccc---------------cCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 2111000 000000 0 000 0112223467899999999999999999
Q ss_pred EEEEEecC
Q 000961 435 QVLVKNLK 442 (1208)
Q Consensus 435 ~I~Iwdl~ 442 (1208)
+|+||++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999874
No 67
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.8e-31 Score=320.76 Aligned_cols=347 Identities=19% Similarity=0.295 Sum_probs=277.7
Q ss_pred eEEEEecccccCE-EEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000961 42 TLIDRFDEHDGPV-RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 42 ~~i~~l~~h~~~V-~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iw 120 (1208)
.....+.+|...| +++.| ++++|++|+.||+|++||+.+++.+.++.+|.+.|.+++|++++ .+++++.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456788998885 66555 56799999999999999999999999999999999999999988 99999999999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEee--CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 121 NWQSRTCISVLTGHNHYVMCASFHP--KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 121 d~~s~~~i~~l~~h~~~V~~l~~~p--~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
|+.+++++..+.+|...|.++.|++ +++++++++.||+|++||+.+............... .............
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENPYFVG 264 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE----EESCGGGCTTEEE
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce----EeeccCCCeEEEE
Confidence 9999999999999999999999995 678999999999999999987654322111000000 0000111222445
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
.+.+|...|.++ +++++++++|+.||.|++||+.+++. +..+.+|...|.+++|+|+++++++++.||.|++||+.
T Consensus 265 ~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 265 VLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC--LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp EECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred EccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 778899998887 56788999999999999999999887 78889999999999999999999999999999999999
Q ss_pred CCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecC
Q 000961 279 KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRR 358 (1208)
Q Consensus 279 ~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~ 358 (1208)
+++.+..+..|...+.+++++ ++++++++ .|+.|++||+.++........
T Consensus 341 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s--------------------------~dg~v~vwd~~~~~~~~~~~~-- 390 (464)
T 3v7d_B 341 NGELMYTLQGHTALVGLLRLS--DKFLVSAA--------------------------ADGSIRGWDANDYSRKFSYHH-- 390 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEC--SSEEEEEE--------------------------TTSEEEEEETTTCCEEEEEEC--
T ss_pred CCcEEEEEeCCCCcEEEEEEc--CCEEEEEe--------------------------CCCcEEEEECCCCceeeeecC--
Confidence 999999999999999999997 47788887 477899999988665333221
Q ss_pred CCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEE
Q 000961 359 PGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLV 438 (1208)
Q Consensus 359 ~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~I 438 (1208)
...+..++|+|+++.+++++ ++.+++|++........ ....+.+.|.+++|+ ++.++++++.++.+.+
T Consensus 391 ------~~~~~~~~~~~~~~~l~~~~---dg~i~iwd~~~g~~~~~--~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 391 ------TNLSAITTFYVSDNILVSGS---ENQFNIYNLRSGKLVHA--NILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp ------TTCCCEEEEEECSSEEEEEE---TTEEEEEETTTCCEEES--CTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred ------CCCccEEEEEeCCCEEEEec---CCeEEEEECCCCcEEeh--hhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 12678889999999776644 48999999987533211 245678899999997 5566677776777666
Q ss_pred Eec
Q 000961 439 KNL 441 (1208)
Q Consensus 439 wdl 441 (1208)
|-+
T Consensus 459 ~~l 461 (464)
T 3v7d_B 459 EIL 461 (464)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 68
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-33 Score=334.99 Aligned_cols=347 Identities=10% Similarity=0.150 Sum_probs=267.0
Q ss_pred ceEe-ecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCC---Ce---EEEEecccccCEEEEEEEcCCCEEEEEECCC
Q 000961 2 LTKF-ETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRM---GT---LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY 73 (1208)
Q Consensus 2 l~~l-~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~---g~---~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg 73 (1208)
+.++ ++|.+.|++++|+| ++++|++|+.||+|+|||+.+ +. ....+ .|.++|++++|+|++++|++|+.||
T Consensus 55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 4567 89999999999999 999999999999999999876 43 22333 5999999999999999999999999
Q ss_pred eEEEEECC---CCeEEEEEcc------------CCCCEEEEE--EcCCCCEEEEEECCCcEEEEECCCCeEEEEEec--C
Q 000961 74 KIKVWNYK---MHRCLFTLLG------------HLDYIRTVQ--FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG--H 134 (1208)
Q Consensus 74 ~I~vWd~~---~~~~~~~l~~------------h~~~I~~v~--fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~--h 134 (1208)
.|++||+. +++....+.+ +...+.++. +++++.+|++++.||.|++||+.+++++..+.+ |
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 99999994 5554443332 456677776 568899999999999999999999999999988 8
Q ss_pred CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe-ccCCCeEEEEEc
Q 000961 135 NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFH 213 (1208)
Q Consensus 135 ~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s 213 (1208)
...|++++|+|++++|++|+.||+|++||++..+.. ..+. .|...|.+++|+
T Consensus 214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI---------------------------RSWSFGDHAPITHVEVC 266 (437)
T ss_dssp GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE---------------------------EEEBCTTCEEEEEEEEC
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE---------------------------EEEecCCCCceEEEEec
Confidence 999999999999999999999999999999874322 1332 677789999665
Q ss_pred ----CCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec-
Q 000961 214 ----PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR- 288 (1208)
Q Consensus 214 ----p~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~- 288 (1208)
|++.+|++|+.||.|++||+.+++. +..+.+|...+..+.|+|+++.+ .+.. +..
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l----~~~~--------------~~~~ 326 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHC--QYAFINSDEQPSMEHFLPIEKGL----EELN--------------FCGI 326 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEE--EEEEESSSSCCCGGGGSCBCSSG----GGCC--------------CCCC
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcE--EEEEEcCCCCCccceeccccccc----ccce--------------eccc
Confidence 4677999999999999999999887 78888999999999999987655 1111 233
Q ss_pred -CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcC
Q 000961 289 -EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQS 367 (1208)
Q Consensus 289 -~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (1208)
+...|++++|+ +++++++|+ .|+.|++||+.+++....+.-.... ...
T Consensus 327 ~~~~~v~~l~~~-~~~~l~s~~--------------------------~d~~i~~wd~~~~~~~~~~~~~~~~----~~~ 375 (437)
T 3gre_A 327 RSLNALSTISVS-NDKILLTDE--------------------------ATSSIVMFSLNELSSSKAVISPSRF----SDV 375 (437)
T ss_dssp CSGGGGCCEEEE-TTEEEEEEG--------------------------GGTEEEEEETTCGGGCEEEECC--C----CCE
T ss_pred ccCCceEEEEEC-CceEEEecC--------------------------CCCeEEEEECCCcccceEEeccccc----Cce
Confidence 67789999999 778888887 4778999999988776554322111 114
Q ss_pred CeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeC--CcEEEEEcCCCEEEEEe
Q 000961 368 PRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIAR--NRFAVLDKSSNQVLVKN 440 (1208)
Q Consensus 368 i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d--~~~l~~~~~dg~I~Iwd 440 (1208)
+....+++....++.. .... ..........|.+.|.+++|+++ +.++++++.||.|+||+
T Consensus 376 ~~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 376 FIPTQVTANLTMLLRK------------MKRT-STHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEETTEEEEEEE------------CC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEEeecceEEEEEe------------cccc-cccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4455555554433221 0000 01111234568899999999998 78999999999999995
No 69
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-31 Score=309.07 Aligned_cols=315 Identities=16% Similarity=0.216 Sum_probs=260.3
Q ss_pred EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000961 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW 122 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~ 122 (1208)
....+.+|.++|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC-----CeEEEEECCCCccccccCCCcceeeccccccccccccceEE
Q 000961 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1208)
Q Consensus 123 ~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D-----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1208)
.+++++..+. |...|.++.|+|+++++++++.+ |.|++||+.......... .......
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~----------------~~~~~~~ 166 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT----------------KVSEEPI 166 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE----------------EECSSCS
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec----------------cccccee
Confidence 9999999888 88999999999999999999999 999999987654321100 0000011
Q ss_pred EEEeccCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000961 198 YVLEGHDR--GVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 198 ~~~~~h~~--~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~-~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~v 274 (1208)
..+..|.. .+.+++|+|++++|++++.||.|++||+.+ ... +..+..|...|.+++|+|++++|++++.||.|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 244 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe--EEEEecCCCceeEEEECCCCCEEEEecCCceEEE
Confidence 23445665 899999999999999999999999999998 454 7788889999999999999999999999999999
Q ss_pred EeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCe-eeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 275 WDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGM-IVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 275 wd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi-~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
||+.+++.+..+. +...+..++|+|+++++++++.++. .++...... ....+++||..+++....
T Consensus 245 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 245 VDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------GKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC--------------------------CEEEEEETTTCCEEEE
T ss_pred EECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCC-------------CcceeEEEecCCCcchhh
Confidence 9999999988887 6778999999999999998876542 222221110 234799999999877554
Q ss_pred EeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 354 IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
+. . + ...|.+++|+|++++++++ +.||.+++|++...
T Consensus 311 ~~--~--~---~~~v~~~~~s~~~~~l~s~--~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 311 VQ--G--H---FGPLNTVAISPQGTSYASG--GEDGFIRLHHFEKS 347 (369)
T ss_dssp EE--C--C---SSCEEEEEECTTSSEEEEE--ETTSEEEEEEECHH
T ss_pred ee--c--c---cCcEEEEEECCCCCEEEEE--cCCCeEEEEECccc
Confidence 43 2 2 3389999999999977553 35789999998753
No 70
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=336.10 Aligned_cols=248 Identities=19% Similarity=0.366 Sum_probs=223.4
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCC----CeEEEEecccccCEEEEEEEcC-CCEEEEEECCCeEEEEECC
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRM----GTLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~----g~~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~ 81 (1208)
.|...|++++|+|++++|++++.||.|++||+.+ .+.+..+.+|.++|++++|+|+ +.+|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 5889999999999999999999999999999987 4588889999999999999998 8999999999999999999
Q ss_pred CCe------EEEE---EccCCCCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEecC------CCCEEEEEEee
Q 000961 82 MHR------CLFT---LLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGH------NHYVMCASFHP 145 (1208)
Q Consensus 82 ~~~------~~~~---l~~h~~~I~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h------~~~V~~l~~~p 145 (1208)
+++ .... ..+|...|.+++|+|+ +.++++++.||.|++||+.+++.+..+..| ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 3333 3679999999999999 789999999999999999999999998876 78999999999
Q ss_pred CC-CEEEEEECCC---eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe-ccCCCeEEEEEcC-CCCEE
Q 000961 146 KE-DLVVSASLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHP-TLPLI 219 (1208)
Q Consensus 146 ~~-~~l~s~s~Dg---~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp-~g~~L 219 (1208)
++ .++++++.|+ .|++||+++..... ..+. +|...|.+++|+| ++++|
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~--------------------------~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPL--------------------------QTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCS--------------------------BCCCSCCSSCEEEEEECSSCSSCE
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCc--------------------------EEeecCccCceeEEEeCCCCCCeE
Confidence 97 6999999999 99999998743211 1344 7899999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCee
Q 000961 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ-DIIVSNSEDKSIRVWDVTKRTG 282 (1208)
Q Consensus 220 ~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g-~~l~sgs~dg~I~vwd~~~~~~ 282 (1208)
++++.||.|++||+.+++. +..+.+|...|++++|+|++ .+|++++.||.|++||+.++..
T Consensus 279 ~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 279 LSSGRDNTVLLWNPESAEQ--LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp EEEESSSEEEEECSSSCCE--EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred EEEeCCCCEEEeeCCCCcc--ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 9999999999999999886 78888999999999999999 8999999999999999987654
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.5e-32 Score=318.28 Aligned_cols=344 Identities=15% Similarity=0.220 Sum_probs=249.2
Q ss_pred eEeecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeEEEEec-------------ccccCEEEEEEEc-CCCEEE
Q 000961 3 TKFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTLIDRFD-------------EHDGPVRGVHFHK-SQPLFV 67 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g~~i~~l~-------------~h~~~V~~l~fsp-~~~~La 67 (1208)
..+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|..+|++++|+| ++.+|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 46788999999999999 99999999999999999998876554442 5999999999999 778999
Q ss_pred EEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC---EEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEe
Q 000961 68 SGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYP---WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144 (1208)
Q Consensus 68 sgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~---~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~ 144 (1208)
+++.||.|++||+.+++....+. +...+.++.|++.+. ++++++.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~ 195 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS 195 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred EEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence 99999999999999999888876 788899999999554 99999999999999999999999999999999999999
Q ss_pred eCCC-EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe
Q 000961 145 PKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1208)
Q Consensus 145 p~~~-~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs 223 (1208)
|+++ .+++++.||.|++||++.......... .... ...........+|...|.+++|+|++++|++++
T Consensus 196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 196 PRYDYILATASADSRVKLWDVRRASGCLITLD-------QHNG----KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp SSCTTEEEEEETTSCEEEEETTCSSCCSEECC-------TTTT----CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCCccccccc-------cccc----ccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 9998 699999999999999987542211000 0000 000000112356889999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEEeecCc-----CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEE
Q 000961 224 DDRQVKLWRMNETKAWEVDTLRGH-----MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS 298 (1208)
Q Consensus 224 ~dg~I~iwd~~~~~~~~~~~l~~h-----~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~ 298 (1208)
.||.|++||+.+++. ......+ ...+........+..+++++.++.|++||+.+++.+..+..|...|++++|
T Consensus 265 ~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 342 (408)
T 4a11_B 265 TDNRMRLWNSSNGEN--TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF 342 (408)
T ss_dssp TTSCEEEEETTTCCB--CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CCCeEEEEECCCCcc--ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence 999999999998775 2222211 122222223334556777788999999999999999999999999999999
Q ss_pred eCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCC
Q 000961 299 HPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTEN 378 (1208)
Q Consensus 299 sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 378 (1208)
+|++++|++++. |+.|++|++.+++.+..... ......++|...
T Consensus 343 s~~~~~l~s~~~--------------------------dg~i~iw~~~~~~~~~~~~~----------~~~~~~~~~~~~ 386 (408)
T 4a11_B 343 QSNFQELYSGSR--------------------------DCNILAWVPSLYEPVPDDDE----------TTTKSQLNPAFE 386 (408)
T ss_dssp ETTTTEEEEEET--------------------------TSCEEEEEECC-------------------------------
T ss_pred cCCCCEEEEECC--------------------------CCeEEEEeCCCCCccCCCCc----------eEeccccccccc
Confidence 999999999984 67788999888765432211 111223344333
Q ss_pred EEEEEEecCCCEEEEEEcc
Q 000961 379 AVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 379 ~llv~~~~~~g~v~l~~l~ 397 (1208)
.... ...+++.+.+|..+
T Consensus 387 ~~~~-~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 387 DAWS-SSDEEGGTSAWSHP 404 (408)
T ss_dssp -------------------
T ss_pred eeec-ccCccCceeecCCc
Confidence 3332 33366889999866
No 72
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.6e-32 Score=317.54 Aligned_cols=323 Identities=15% Similarity=0.165 Sum_probs=254.4
Q ss_pred ecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe--EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 000961 47 FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124 (1208)
Q Consensus 47 l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~--~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s 124 (1208)
+..|.++|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44599999999999999999999999999999999987 8899999999999999999999999999999999999998
Q ss_pred CeEEEEE--ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 125 RTCISVL--TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 125 ~~~i~~l--~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
++..... ..|...|.+++|+|++++|++++.||.|++||+....... .......+
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-----------------------~~~~~~~~ 140 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW-----------------------VCKHIKKP 140 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE-----------------------EEEEECTT
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce-----------------------eeeeeecc
Confidence 8765544 6789999999999999999999999999999987644211 11223456
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC------------------CCceeEEEeecCcCCCeEEEEEccCCCEEE
Q 000961 203 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN------------------ETKAWEVDTLRGHMNNVSCVMFHAKQDIIV 264 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~------------------~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~ 264 (1208)
|...|.+++|+|++++|++++.||.|++||+. .++. +..+.+|...|.+++|+|++++|+
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL--MFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE--EEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh--eEecCCCCCeEEEEEECCCCCEEE
Confidence 88999999999999999999999999999964 3444 677889999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEE
Q 000961 265 SNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYE 344 (1208)
Q Consensus 265 sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d 344 (1208)
+++.||.|++||+.+++.+..+..+...+.+++|+|++.++++|.++. +++|+
T Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~---------------------------i~i~~ 271 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF---------------------------PVLFT 271 (372)
T ss_dssp EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSS---------------------------CEEEE
T ss_pred EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCe---------------------------EEEEE
Confidence 999999999999999999999999999999999999999999886444 45555
Q ss_pred ccC--CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEE---EccCCCC---CCCcccccccCCceE
Q 000961 345 FST--QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELY---VIPKDSI---GRGDSVQDAKKGLGG 416 (1208)
Q Consensus 345 ~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~---~l~~~~~---~~~~~~~~~~~~~i~ 416 (1208)
+.+ ++......+..... . +.. ....+.+| +...... ........+|.+.|+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~-----~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 330 (372)
T 1k8k_C 272 YDSAAGKLSFGGRLDVPKQ-----S-------SQR---------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 330 (372)
T ss_dssp EETTTTEEEECCCCCCC-----------------------------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred ccCcCceEEEeeccCcccc-----c-------hhh---------hcchhhhhhhcccccccccCccccccccccccCCcc
Confidence 554 32111111111000 0 000 00112223 1111100 000102348899999
Q ss_pred EEEEE-eCC---cEEEEEcCCCEEEEEecC
Q 000961 417 SAIFI-ARN---RFAVLDKSSNQVLVKNLK 442 (1208)
Q Consensus 417 ~~~fs-~d~---~~l~~~~~dg~I~Iwdl~ 442 (1208)
+++|. +++ +++++++.||.|++|++.
T Consensus 331 ~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 331 QISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred eeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 99977 555 899999999999999987
No 73
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-33 Score=340.06 Aligned_cols=317 Identities=12% Similarity=0.133 Sum_probs=231.1
Q ss_pred EeCCCCEEEEEecCCeEEEEECCCCeEE----EEecccccCEEEEEEEcC------CCEEEEEECCCeEEEEECCCCeE-
Q 000961 17 FHSKRPWILASLHSGVIQLWDYRMGTLI----DRFDEHDGPVRGVHFHKS------QPLFVSGGDDYKIKVWNYKMHRC- 85 (1208)
Q Consensus 17 fspdg~~Lasg~~dg~I~iWd~~~g~~i----~~l~~h~~~V~~l~fsp~------~~~Lasgs~Dg~I~vWd~~~~~~- 85 (1208)
.+|++..+++++.||+|+|||+.+++.. ..+..|.+.|.+++|+|+ +.+||+++.||+|++||+.++..
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 4678889999999999999999877642 346678899999999997 57999999999999999986632
Q ss_pred ----------EEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCEEEE--EEeeCC-CEEE
Q 000961 86 ----------LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCA--SFHPKE-DLVV 151 (1208)
Q Consensus 86 ----------~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-~~i~~l~~h~~~V~~l--~~~p~~-~~l~ 151 (1208)
..++.+|...|++++|++++ .|++|+.||+|++||+.++ .+...+.+|...|.++ .|+|++ .+|+
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 34788999999999999865 8999999999999999876 4456788999999999 567887 8999
Q ss_pred EEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC--CeEEEEEcCCCCEEEEEeCCCcEE
Q 000961 152 SASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR--GVNWAAFHPTLPLIVSGADDRQVK 229 (1208)
Q Consensus 152 s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~g~~L~sgs~dg~I~ 229 (1208)
+++.|++|++||+++.+... .+.+|.. .|.+++|+|+++.+++++.|++|+
T Consensus 328 S~S~D~tvklWD~~~~~~~~---------------------------~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~ 380 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTK---------------------------TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLR 380 (524)
T ss_dssp EEETTSEEEEECGGGHHHHC---------------------------EEEEECSCCSCCCEEEETTTTEEEEECSSSEEE
T ss_pred EeccCCeEEEEECCCCCccc---------------------------ccccccccCcccceEeCCCcCeEEEeCCCCcEE
Confidence 99999999999997644321 2334543 478999999999999999999999
Q ss_pred EEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec-----CCCCEEEEEEeCCCCE
Q 000961 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-----EHDRFWILASHPEMNL 304 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~-----~~~~i~~la~sp~~~~ 304 (1208)
+||++++.. +..+.+|.+.|++++|+|+|++|++|+.||+|++||+..+ .+...+. ....++.++|+|++..
T Consensus 381 lwd~~~~~~--~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 457 (524)
T 2j04_B 381 AVPSRAAFA--VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDK 457 (524)
T ss_dssp EEETTCTTC--CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCE
T ss_pred EEECccccc--ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCe
Confidence 999998876 5677889999999999999999999999999999998654 2222111 1125789999999885
Q ss_pred EEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCC-EEEEE
Q 000961 305 LAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTEN-AVLIC 383 (1208)
Q Consensus 305 la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~llv~ 383 (1208)
+.. .++..+| .|+. ++.. ...+. ++ ...|.+++|+|++. ...++
T Consensus 458 ~~~--~~~~~~~-------------------------~~~~-~g~~--~~~l~--gh---~~~V~~Vafsp~~~~~~~lA 502 (524)
T 2j04_B 458 YRI--DSSYEVY-------------------------PLTV-NDVS--KAKID--AH---GINITCTKWNETSAGGKCYA 502 (524)
T ss_dssp EEE--CCCCCCC-------------------------C------------------C---CCSCCCEEECCSTTTTTEEE
T ss_pred EEc--cCCceec-------------------------cccc-CCcc--eeeec--CC---CceEEEEECCCCCCccHHHH
Confidence 532 1121111 1111 1221 12222 22 23899999999975 22335
Q ss_pred EecCCCEEEEEEccCC
Q 000961 384 SDVDGGSYELYVIPKD 399 (1208)
Q Consensus 384 ~~~~~g~v~l~~l~~~ 399 (1208)
+++.+|.|+||++..+
T Consensus 503 sg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 503 FSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EECTTSEEEEEECSCC
T ss_pred hhccCceEEEEEcccc
Confidence 5668899999998854
No 74
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=329.25 Aligned_cols=295 Identities=16% Similarity=0.280 Sum_probs=234.7
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe-----------EEEEecccc------------cCEEEEEEEcCC-
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT-----------LIDRFDEHD------------GPVRGVHFHKSQ- 63 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~-----------~i~~l~~h~------------~~V~~l~fsp~~- 63 (1208)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ++|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999998877 578888998 899999999998
Q ss_pred -CEEEEEECCCeEEEEECCCCeEE---------------------------------------EE-EccCCCCEEEEEEc
Q 000961 64 -PLFVSGGDDYKIKVWNYKMHRCL---------------------------------------FT-LLGHLDYIRTVQFH 102 (1208)
Q Consensus 64 -~~Lasgs~Dg~I~vWd~~~~~~~---------------------------------------~~-l~~h~~~I~~v~fs 102 (1208)
.+|++++.|++|++||+.++... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764432 12 36799999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCC-CeEEEE-------EecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCcccccc
Q 000961 103 HEYPWIVSASDDQTIRIWNWQS-RTCISV-------LTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVS 173 (1208)
Q Consensus 103 ~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~-------l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~ 173 (1208)
|++++|+++ .|++|++||+.+ ++.+.. +.+|...|.+++|+|++ ++|++++.||+|++||+++.+.....
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 799999999984 444443 45899999999999998 99999999999999999876531100
Q ss_pred CCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeecCcCCC--
Q 000961 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTLRGHMNN-- 250 (1208)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~-~~~~~~~~l~~h~~~-- 250 (1208)
. ..+ .+..+......+.+|...|.+++|+|++++|++++. +.|++||+.. ++. +..+.+|...
T Consensus 266 ~----~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~--~~~~~~~~~~~~ 331 (447)
T 3dw8_B 266 S----KLF-------EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP--VETYQVHEYLRS 331 (447)
T ss_dssp C----EEE-------CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC--SCCEESCGGGTT
T ss_pred e----eEe-------ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc--cceeeccccccc
Confidence 0 000 000000000012234459999999999999999999 9999999987 655 6667777532
Q ss_pred -------------eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee------------------------------
Q 000961 251 -------------VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR------------------------------ 287 (1208)
Q Consensus 251 -------------V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~------------------------------ 287 (1208)
+..++|+|++++|++++.||.|++||+.+++.+....
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccc
Confidence 3349999999999999999999999999887763211
Q ss_pred --cCCCCEEEEEEeCCCCEEEEEECCCeeeEe
Q 000961 288 --REHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 288 --~~~~~i~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
.....+..++|+|++++||+++.+++.+|.
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~ 443 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNNLYIFQ 443 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSCEEEEE
T ss_pred ccccCCceeEEEECCCCCEEEEEecceeeeec
Confidence 123468889999999999999988888775
No 75
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-33 Score=329.69 Aligned_cols=262 Identities=13% Similarity=0.140 Sum_probs=213.8
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC--eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g--~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
.++.|.++|++++|+|++++|++++.||.|+|||+.++ +.+..+.+|.++|++++|+|++++|++++.|++|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 35667889999999999999999999999999999988 7888899999999999999999999999999999999999
Q ss_pred CCe---EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe---EEEEEec-CCCCEEEEEEeeCCCEEEEEE
Q 000961 82 MHR---CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT---CISVLTG-HNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 82 ~~~---~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~---~i~~l~~-h~~~V~~l~~~p~~~~l~s~s 154 (1208)
+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+.+ |...|.+++|+|++++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 877 677888999999999999999999999999999999999887 4677777 999999999999999999999
Q ss_pred CCCeEEEEECCCCccccccCCCcceeecccccccccc--ccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000961 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGG--VDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 155 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd 232 (1208)
.|++|++||+........... ..++. ........+ +|...|.+++|+|++++|++++.||.|++||
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEA-----------SVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCS-----------CSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred CCCEEEEEEEEecccCCCccc-----------cccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 999999999975432211000 00000 012223334 8999999999999999999999999999999
Q ss_pred CCCCcee--EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 233 MNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 233 ~~~~~~~--~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
+.+++.. .+..+.+|...|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9988752 156778999999999999999999998876655 67654
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.6e-31 Score=317.19 Aligned_cols=329 Identities=28% Similarity=0.408 Sum_probs=274.2
Q ss_pred eEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
+....+.+|.+.|.. ++++++++|++|+.||+|++||+.+++++.++.+|...|.++.|+ +..+++++.||+|++||
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 345678899987533 355578999999999999999999999999999999999999998 56999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
+.+++.+..+.+|...|.++.|+ ++.+++++.||+|++||+.+.+. ...+.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~---------------------------~~~~~ 236 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC---------------------------LHVLM 236 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE---------------------------EEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE---------------------------EEEEc
Confidence 99999999999999999999996 57899999999999999986442 33567
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 202 ~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
+|...|.+++| ++.++++|+.||.|++||+.+++. +..+.+|...|.++.| ++.++++++.||.|++||+.+++
T Consensus 237 ~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 237 GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC--LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE--EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC
T ss_pred CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE--eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC
Confidence 89999999999 678999999999999999998886 7788899999999999 78999999999999999999999
Q ss_pred eEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCC
Q 000961 282 GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGS 361 (1208)
Q Consensus 282 ~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 361 (1208)
.+..+..+...+.++.++ ++++++|+ .|+.|++||+.+++....+.... .+
T Consensus 311 ~~~~~~~~~~~v~~~~~~--~~~l~~~~--------------------------~dg~i~vwd~~~~~~~~~~~~~~-~~ 361 (445)
T 2ovr_B 311 CIHTLTGHQSLTSGMELK--DNILVSGN--------------------------ADSTVKIWDIKTGQCLQTLQGPN-KH 361 (445)
T ss_dssp EEEEECCCCSCEEEEEEE--TTEEEEEE--------------------------TTSCEEEEETTTCCEEEEECSTT-SC
T ss_pred EEEEEcCCcccEEEEEEe--CCEEEEEe--------------------------CCCeEEEEECCCCcEEEEEccCC-CC
Confidence 999999888888887764 55777777 47788999998877654443221 12
Q ss_pred CCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcc--cccccCCceEEEEEEeCCcEEEEEcCCCE----
Q 000961 362 TSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDS--VQDAKKGLGGSAIFIARNRFAVLDKSSNQ---- 435 (1208)
Q Consensus 362 ~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~--~~~~~~~~i~~~~fs~d~~~l~~~~~dg~---- 435 (1208)
...+.+++|++ +++++ ++.+|.+++|++.......... ....+.+.+.+++|+|++.++++++.||+
T Consensus 362 ---~~~v~~~~~~~--~~l~s--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~ 434 (445)
T 2ovr_B 362 ---QSAVTCLQFNK--NFVIT--SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 434 (445)
T ss_dssp ---SSCEEEEEECS--SEEEE--EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred ---CCCEEEEEECC--CEEEE--EeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccE
Confidence 33899999964 55443 3467999999988653211110 11467789999999999999999999997
Q ss_pred EEEEecCCc
Q 000961 436 VLVKNLKNE 444 (1208)
Q Consensus 436 I~Iwdl~~~ 444 (1208)
|.|||+..+
T Consensus 435 l~v~df~~~ 443 (445)
T 2ovr_B 435 LLVLDFDVD 443 (445)
T ss_dssp EEEEECCCC
T ss_pred EEEEECCCC
Confidence 999999743
No 77
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.4e-33 Score=317.15 Aligned_cols=251 Identities=18% Similarity=0.288 Sum_probs=211.2
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe--EEEEecccccCEEEEEEEc--CCCEEEEEECCCeEEEEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd 79 (1208)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.++|++++|+| ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467999999999999999999999999999999998875 4678899999999999986 488999999999999999
Q ss_pred CCCC--eEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCEEEEEEeeC------
Q 000961 80 YKMH--RCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSRTC---ISVLTGHNHYVMCASFHPK------ 146 (1208)
Q Consensus 80 ~~~~--~~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s~~~---i~~l~~h~~~V~~l~~~p~------ 146 (1208)
+.++ +....+.+|...|.+++|+|+ +.+|++++.|++|++||+.++.. ...+.+|...|.++.|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9887 466788899999999999998 78999999999999999987532 3455689999999999997
Q ss_pred -----------CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 147 -----------EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 147 -----------~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
+++|++|+.|++|++||+...... .....+.+|...|.+++|+|+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~------------------------~~~~~l~~h~~~V~~v~~sp~ 223 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW------------------------KEEQKLEAHSDWVRDVAWAPS 223 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE------------------------EEEECCBCCSSCEEEEECCCC
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCcc------------------------ceeeecccCCCceEEEEecCC
Confidence 468999999999999998642210 122356789999999999998
Q ss_pred C----CEEEEEeCCCcEEEEECCCCc--eeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 216 L----PLIVSGADDRQVKLWRMNETK--AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 216 g----~~L~sgs~dg~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
+ .+|++++.||+|++|++.+.. .+....+..|...|.+++|+|++++|++++.||+|++|+..
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 6 799999999999999987631 11123456788999999999999999999999999999965
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=327.09 Aligned_cols=372 Identities=12% Similarity=0.176 Sum_probs=285.6
Q ss_pred EEeCCCCEEEEEecCCeEEEEECCCCeEEEEe-cccccCEEEEEEEc-CCCEEEEEECCCeEEEEECCC---Ce---EEE
Q 000961 16 SFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKM---HR---CLF 87 (1208)
Q Consensus 16 afspdg~~Lasg~~dg~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~---~~---~~~ 87 (1208)
.|+|++..+++++ .|+ .+++.+..+ .+|.++|++++|+| ++++|++|+.||+|+|||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4677787777664 488 678888888 89999999999999 999999999999999999876 33 333
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC---CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEEC
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ---SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~---s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl 164 (1208)
.+ +|...|.+++|+|++.+|++++.||+|++||+. +++.+....+| .+..+.|+|++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~----------------- 166 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG----------------- 166 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-----------------
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-----------------
Confidence 43 499999999999999999999999999999984 66666665554 55666665543
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA--FHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~ 242 (1208)
+...+.++. ++|++.+|++|+.||.|++||+.+++. +.
T Consensus 167 --------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~ 206 (437)
T 3gre_A 167 --------------------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER--LQ 206 (437)
T ss_dssp --------------------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE--EE
T ss_pred --------------------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee--eE
Confidence 123344444 678999999999999999999999887 66
Q ss_pred eecC--cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee-cCCCCEEEEEEeC----CCCEEEEEECCCeee
Q 000961 243 TLRG--HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFWILASHP----EMNLLAAGHDSGMIV 315 (1208)
Q Consensus 243 ~l~~--h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~i~~la~sp----~~~~la~g~~~gi~v 315 (1208)
.+.+ |...|++++|+|++++|++++.||.|++||+.+++.+..+. .+...|.+++++| ++.++++|+
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~------ 280 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS------ 280 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES------
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc------
Confidence 6766 89999999999999999999999999999999999999886 6777899996665 566788777
Q ss_pred EeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 316 FKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 316 ~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
.|+.|++||+.+++....+... ...+..+.|+|+++.+ . +.
T Consensus 281 --------------------~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l----~--~~------ 321 (437)
T 3gre_A 281 --------------------SKTFLTIWNFVKGHCQYAFINS-------DEQPSMEHFLPIEKGL----E--EL------ 321 (437)
T ss_dssp --------------------TTEEEEEEETTTTEEEEEEESS-------SSCCCGGGGSCBCSSG----G--GC------
T ss_pred --------------------CCCcEEEEEcCCCcEEEEEEcC-------CCCCccceeccccccc----c--cc------
Confidence 4778999999988765544321 2267778888887644 1 10
Q ss_pred ccCCCCCCCccccc--ccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC-CceeeeecCCc----ceEEEEEeCCccEEE
Q 000961 396 IPKDSIGRGDSVQD--AKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK-NEVVKKSILPI----AADAIFYAGTGNLLC 468 (1208)
Q Consensus 396 l~~~~~~~~~~~~~--~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~-~~~~~~l~~~~----~v~~i~~s~dg~~La 468 (1208)
.+. .|...|.+++|+ +++++++++.|+.|++||+. ++....+..+. .+....++++..+++
T Consensus 322 -----------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (437)
T 3gre_A 322 -----------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLL 389 (437)
T ss_dssp -----------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEE
T ss_pred -----------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEE
Confidence 122 378889999999 88999999999999999998 56677777653 566667777766665
Q ss_pred EeCCeEEEEEcCCCeEEEEE--eCCCeeEEEECCC--CCEEEEEeCCe-EEEEe
Q 000961 469 RAEDRVVIFDLQQRLVLGDL--QTPFVKYVVWSND--MESVALLSKHA-IIIAS 517 (1208)
Q Consensus 469 s~dg~v~lwdl~~~~~l~~~--~~~~v~~v~ws~d--g~~la~~s~~~-i~i~~ 517 (1208)
.. |+...+..+... ....|..+.|+++ +.+|++++.++ |.||+
T Consensus 390 ~~------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 390 RK------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EE------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred Ee------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 44 222222222222 2267999999988 78999999888 67663
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.7e-32 Score=312.75 Aligned_cols=275 Identities=11% Similarity=0.109 Sum_probs=243.2
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe---EEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEEC
Q 000961 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT---LIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~---~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~ 80 (1208)
..+|.+.|++++|+|++++|++++.||.|+|||+.++. ....+..|..+|++++|+|+++ +|++|+.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 46899999999999999999999999999999998876 3455568999999999999999 9999999999999999
Q ss_pred -CCCeEEEEEcc--CCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCEEEEEEeeCCC
Q 000961 81 -KMHRCLFTLLG--HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS---------RTCISVLTGHNHYVMCASFHPKED 148 (1208)
Q Consensus 81 -~~~~~~~~l~~--h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s---------~~~i~~l~~h~~~V~~l~~~p~~~ 148 (1208)
.+++. ..+.+ |...|.+++|+| +.++++++.|+.|++||+.+ ++++..+. |...|.+++|+|++
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 77654 77788 999999999999 99999999999999999987 66666666 88999999999876
Q ss_pred EEEEEECCCeEEEEECCC-CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCC
Q 000961 149 LVVSASLDQTVRVWDIGA-LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDR 226 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg 226 (1208)
+++++.|+.|++||+++ .... .......|...+.+++|+| +++++++++.||
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~-------------------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDN-------------------------GTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCC-------------------------CEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred -EEEEeCCCeEEEEECCcccccc-------------------------ceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 99999999999999986 3321 1224456788999999999 999999999999
Q ss_pred cEEEEECCCC------ceeEEEeecCcCC---------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC-C
Q 000961 227 QVKLWRMNET------KAWEVDTLRGHMN---------NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-H 290 (1208)
Q Consensus 227 ~I~iwd~~~~------~~~~~~~l~~h~~---------~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-~ 290 (1208)
.|++|++... +. ...+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 217 ~i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~ 294 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSK--RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294 (342)
T ss_dssp EEEEEECCTTCCSTTCTT--CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred cEEEEEEcCCCccccccc--ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccC
Confidence 9999999876 44 556666654 9999999999999999999999999999999999999988 8
Q ss_pred CCEEEEEEeCCCCEEEEEECCCe
Q 000961 291 DRFWILASHPEMNLLAAGHDSGM 313 (1208)
Q Consensus 291 ~~i~~la~sp~~~~la~g~~~gi 313 (1208)
..|++++ |+++++++++.++.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTH
T ss_pred CCceEec--CCCCeEEEEecCCc
Confidence 9999999 99999999987664
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-33 Score=324.87 Aligned_cols=248 Identities=16% Similarity=0.144 Sum_probs=209.9
Q ss_pred ecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC--eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 000961 47 FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH--RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS 124 (1208)
Q Consensus 47 l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~--~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s 124 (1208)
+..|.++|++++|+|++++|++|+.|+.|++||+.++ +++.++.+|...|.+++|+|++++|++++.|++|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3447789999999999999999999999999999988 78888999999999999999999999999999999999998
Q ss_pred Ce---EEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 125 RT---CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 125 ~~---~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
++ ....+.+|...|.+++|+|++++|++++.|+.|++||+.+.+... ....+.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------------------~~~~~~ 142 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW------------------------VSKHLK 142 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC------------------------CCEEEC
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce------------------------eeeEee
Confidence 77 677788899999999999999999999999999999998754211 112445
Q ss_pred c-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------------eeEEEeecCcCCCeEEEEEccCCCEEE
Q 000961 202 G-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK----------------AWEVDTLRGHMNNVSCVMFHAKQDIIV 264 (1208)
Q Consensus 202 ~-h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~----------------~~~~~~l~~h~~~V~~l~~sp~g~~l~ 264 (1208)
+ |...|.+++|+|++++|++++.||.|++||+.... ...+..+ +|...|++++|+|++++|+
T Consensus 143 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 143 RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 5 99999999999999999999999999999986321 1124455 8999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCee----EEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeC
Q 000961 265 SNSEDKSIRVWDVTKRTG----VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 265 sgs~dg~I~vwd~~~~~~----~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~ 319 (1208)
+++.||.|++||+.+++. +..+..|...+.+++|+|+++++++|+++++++|...
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 999999999999999887 7788889999999999999999999998887777654
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=313.61 Aligned_cols=258 Identities=18% Similarity=0.308 Sum_probs=227.6
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECC--CCeEEEEecccccCEEEEEEEcC--CCEEEEEECCCeEE
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYR--MGTLIDRFDEHDGPVRGVHFHKS--QPLFVSGGDDYKIK 76 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~--~g~~i~~l~~h~~~V~~l~fsp~--~~~Lasgs~Dg~I~ 76 (1208)
|+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.++|++++|+++ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 467899999999999999999999999999999999998 66788889999999999999977 99999999999999
Q ss_pred EEECCCCe--EEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCEEEEEEee-----
Q 000961 77 VWNYKMHR--CLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSR--TCISVLTGHNHYVMCASFHP----- 145 (1208)
Q Consensus 77 vWd~~~~~--~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s~--~~i~~l~~h~~~V~~l~~~p----- 145 (1208)
+||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+.++ .....+.+|...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999987 77888899999999999999 999999999999999999877 34456778999999999999
Q ss_pred --------CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC--
Q 000961 146 --------KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-- 215 (1208)
Q Consensus 146 --------~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-- 215 (1208)
++.++++++.||.|++||+++.... ......+.+|...|.+++|+|+
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------------~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----------------------YVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTE-----------------------EEEEEEECCCSSCEEEEEECCCCS
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-----------------------eeeEEEEecccCcEeEEEECCCCC
Confidence 6899999999999999999764321 1134467789999999999999
Q ss_pred -CCEEEEEeCCCcEEEEECCCCc---eeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 216 -LPLIVSGADDRQVKLWRMNETK---AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 216 -g~~L~sgs~dg~I~iwd~~~~~---~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
+.+|++++.||.|++||+.++. .........|...|++++|+|++++|++++.||.|++|++....
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 8999999999999999998864 21233344588999999999999999999999999999987543
No 82
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-31 Score=316.24 Aligned_cols=286 Identities=16% Similarity=0.300 Sum_probs=243.5
Q ss_pred cCCCC--EEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecc-cccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC
Q 000961 7 TKSNR--VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 7 ~h~~~--V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~-h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1208)
+|... +.+++|++ ..+++++.||.|++||+.+++....+.. |...|++++|+|++++|++|+.||.|++||+.++
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 55554 34466664 5578888999999999999998887765 8999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-SRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 84 ~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~-s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
+.+..+.+|...|.++.|+ +..+++++.||.|++||+. .+..+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence 9999999999999999994 5699999999999999998 567788899999999999999999999999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEe--CCCcEEEEECCCCcee
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGA--DDRQVKLWRMNETKAW 239 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs--~dg~I~iwd~~~~~~~ 239 (1208)
|+.+.+. ...+.+|...|.+++|+|++. ++++++ .|+.|++||+.+++.
T Consensus 245 d~~~~~~---------------------------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~- 296 (401)
T 4aez_A 245 DARSSIP---------------------------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR- 296 (401)
T ss_dssp ETTCSSE---------------------------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-
T ss_pred cCCCCCc---------------------------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-
Confidence 9987432 335678999999999999765 556654 699999999999886
Q ss_pred EEEeecCcCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeeEEE--eecCCCCEEEEEEeCCCCEEEEEECCCeee
Q 000961 240 EVDTLRGHMNNVSCVMFHAKQDIIVSNS--EDKSIRVWDVTKRTGVQT--FRREHDRFWILASHPEMNLLAAGHDSGMIV 315 (1208)
Q Consensus 240 ~~~~l~~h~~~V~~l~~sp~g~~l~sgs--~dg~I~vwd~~~~~~~~~--~~~~~~~i~~la~sp~~~~la~g~~~gi~v 315 (1208)
+..+. +...|.+++|+|+++++++++ .||.|++||+.++..... +..|...+.+++|+|++.++++++.
T Consensus 297 -~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~----- 369 (401)
T 4aez_A 297 -VNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS----- 369 (401)
T ss_dssp -EEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT-----
T ss_pred -EEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC-----
Confidence 44443 667899999999999999954 899999999998765544 5678899999999999999999884
Q ss_pred EeeCCCcceEEecCCEEEEEeCCeEEEEEccCCccee
Q 000961 316 FKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ 352 (1208)
Q Consensus 316 ~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~ 352 (1208)
|+.|++|++.+++...
T Consensus 370 ---------------------dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 370 ---------------------DENLKFWRVYDGDHVK 385 (401)
T ss_dssp ---------------------TSEEEEEECCC-----
T ss_pred ---------------------CCcEEEEECCCCcccc
Confidence 7788899998876543
No 83
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-31 Score=313.98 Aligned_cols=304 Identities=15% Similarity=0.250 Sum_probs=246.1
Q ss_pred EECCCCeEEEEecccccCEEEEEEEcCC-CEEEEEECCCeEEEEECCCCeEEEEEc--cCCCCEEEEEEcC-CCCEEEEE
Q 000961 36 WDYRMGTLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKMHRCLFTLL--GHLDYIRTVQFHH-EYPWIVSA 111 (1208)
Q Consensus 36 Wd~~~g~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~~~~~~~l~--~h~~~I~~v~fs~-d~~~l~s~ 111 (1208)
|++...+....+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++.+|+++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 3345567788889999999999999999 899999999999999999888777765 6999999999999 77899999
Q ss_pred ECCCcEEEEECCCCeEEEEEecC---CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccc
Q 000961 112 SDDQTIRIWNWQSRTCISVLTGH---NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDL 188 (1208)
Q Consensus 112 s~Dg~I~iwd~~s~~~i~~l~~h---~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1208)
+.|+.|++||+.+ ..+..+..| ...|.+++|+|++++|++++.||.|++||++..
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------------- 195 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH--------------------- 195 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC---------------------
T ss_pred eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC---------------------
Confidence 9999999999986 555555444 478999999999999999999999999998431
Q ss_pred cccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC----CceeEEEeecCcCCCeEEEEEcc-CCCE
Q 000961 189 FGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNE----TKAWEVDTLRGHMNNVSCVMFHA-KQDI 262 (1208)
Q Consensus 189 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~----~~~~~~~~l~~h~~~V~~l~~sp-~g~~ 262 (1208)
....+.+|...|.+++|+|+++ +|++++.|+.|++||+.+ ... +..+ +|...|++++|+| ++++
T Consensus 196 -------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 196 -------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY--IAEM-PHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp -------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE--EEEE-ECSSCEEEEEECTTTSCE
T ss_pred -------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce--EEEe-cCCCceEEEEEcCCCCCE
Confidence 2335678999999999999999 999999999999999987 443 3334 6999999999999 9999
Q ss_pred EEEEeCCCcEEEEeCCCCeeEEEeecCC-------CCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEE
Q 000961 263 IVSNSEDKSIRVWDVTKRTGVQTFRREH-------DRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA 335 (1208)
Q Consensus 263 l~sgs~dg~I~vwd~~~~~~~~~~~~~~-------~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~ 335 (1208)
|++++.|+.|++||+.+++....+..+. ..+. +.|+|++..++++.. +++.. ++
T Consensus 266 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s----------------~dg~~--s~ 326 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRY----------------PDDQL--LL 326 (383)
T ss_dssp EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECB----------------CCTTT--CT
T ss_pred EEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEec----------------CCccc--cc
Confidence 9999999999999999888776666443 2333 578888777765431 11222 12
Q ss_pred -eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 336 -KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 336 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
.++.|++||+.+++.+..+. ...+ ...+..++|+|+++.++.++ ++.+++|++..
T Consensus 327 s~d~~i~iwd~~~~~~~~~l~--~~~~---~~~~~~~~~s~~g~~l~s~s---d~~i~iw~~~~ 382 (383)
T 3ei3_B 327 NDKRTIDIYDANSGGLVHQLR--DPNA---AGIISLNKFSPTGDVLASGM---GFNILIWNRED 382 (383)
T ss_dssp TCCCCEEEEETTTCCEEEEEC--BTTB---CSCCCEEEECTTSSEEEEEE---TTEEEEEECC-
T ss_pred CCCCeEEEEecCCCceeeeec--CCCC---CceEEEEEEecCccEEEEec---CCcEEEEecCC
Confidence 68999999999988755443 2222 22677889999999876653 58999999864
No 84
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.1e-31 Score=306.66 Aligned_cols=260 Identities=17% Similarity=0.274 Sum_probs=227.8
Q ss_pred ceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC----eEEEEecccccCEEEEEEEc--CCCEEEEEECCCeE
Q 000961 2 LTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHK--SQPLFVSGGDDYKI 75 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g----~~i~~l~~h~~~V~~l~fsp--~~~~Lasgs~Dg~I 75 (1208)
-+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|..+|++++|+| ++.+|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999999999999999999999999876 56778889999999999999 69999999999999
Q ss_pred EEEECCCC---------eEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEECCCCeEEEEEe------------
Q 000961 76 KVWNYKMH---------RCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSRTCISVLT------------ 132 (1208)
Q Consensus 76 ~vWd~~~~---------~~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s~~~i~~l~------------ 132 (1208)
++||+.++ +.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 678889999999999999999 9999999999999999998876543322
Q ss_pred -cCCCCEEEEEEeeC---CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 133 -GHNHYVMCASFHPK---EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 133 -~h~~~V~~l~~~p~---~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
.|...+.++.|+|+ +..+++++.++.+.+|+....+.. ....+.+|...|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~h~~~i~ 218 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-------------------------VAAKLPGHKSLIR 218 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-------------------------EEEECCCCCSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-------------------------eeeecCCCCccee
Confidence 67889999999997 899999999999988877653321 2346678999999
Q ss_pred EEEEcCCC----CEEEEEeCCCcEEEEECCCCc--------------------------------------------eeE
Q 000961 209 WAAFHPTL----PLIVSGADDRQVKLWRMNETK--------------------------------------------AWE 240 (1208)
Q Consensus 209 ~l~~sp~g----~~L~sgs~dg~I~iwd~~~~~--------------------------------------------~~~ 240 (1208)
+++|+|++ ++|++|+.||.|++||+.... ...
T Consensus 219 ~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 219 SISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp EEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred EEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 99999998 899999999999999998641 123
Q ss_pred EEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 000961 241 VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 241 ~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~ 286 (1208)
+..+.+|...|++++|+|++++|++++.||.|++||+.++.....+
T Consensus 299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 6677899999999999999999999999999999999987655544
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.7e-31 Score=312.27 Aligned_cols=283 Identities=16% Similarity=0.317 Sum_probs=243.7
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEec--ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~--~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
++.|+||++ +.||+|. |++|+|||..+|+....+. +|...|++|+|+|+|++|++|+.||+|+|||+.+++++..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 467999975 5788775 9999999999998887664 68889999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~ 168 (1208)
.+|...+.++.|+ +..+++++.|+.+++||... ...+..+.+|...+.++.|+|+++++++++.|+.|++|+....+
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 9999999998875 56899999999999999885 45677889999999999999999999999999999999998754
Q ss_pred cccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-EEEEE--eCCCcEEEEECCCCceeEEEeec
Q 000961 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSG--ADDRQVKLWRMNETKAWEVDTLR 245 (1208)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sg--s~dg~I~iwd~~~~~~~~~~~l~ 245 (1208)
.... .......|...|.+++|+|.+. +++++ +.|+.|++||+.+++. ...+.
T Consensus 264 ~~~~-----------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~--~~~~~ 318 (420)
T 4gga_A 264 GGWV-----------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVD 318 (420)
T ss_dssp SCSC-----------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE--EEEEE
T ss_pred ccce-----------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc--ceeec
Confidence 3211 1225567899999999999665 55543 4799999999999986 44554
Q ss_pred CcCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcc
Q 000961 246 GHMNNVSCVMFHAKQDIIVSNS--EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP 323 (1208)
Q Consensus 246 ~h~~~V~~l~~sp~g~~l~sgs--~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~ 323 (1208)
. ...+.++.|+|+++.+++++ .|+.|++||+.+++++.++.+|.+.|++++|+|+|++|++|+.
T Consensus 319 ~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~------------- 384 (420)
T 4gga_A 319 A-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------------- 384 (420)
T ss_dssp C-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-------------
T ss_pred c-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec-------------
Confidence 4 45789999999999998876 7899999999999999999999999999999999999999984
Q ss_pred eEEecCCEEEEEeCCeEEEEEccCCcc
Q 000961 324 AFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (1208)
Q Consensus 324 ~~s~~~~~L~~~~d~~i~v~d~~~~~~ 350 (1208)
|++|++||+.....
T Consensus 385 -------------D~tvriWdv~~~~~ 398 (420)
T 4gga_A 385 -------------DETLRLWRCFELDP 398 (420)
T ss_dssp -------------TTEEEEECCSCSSC
T ss_pred -------------CCeEEEEECCCCCc
Confidence 77888888876443
No 86
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5e-31 Score=311.14 Aligned_cols=303 Identities=12% Similarity=0.134 Sum_probs=250.9
Q ss_pred EEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe------EEEEEccCCCCEEEEEEcCC----C---CEEE
Q 000961 43 LIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR------CLFTLLGHLDYIRTVQFHHE----Y---PWIV 109 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~------~~~~l~~h~~~I~~v~fs~d----~---~~l~ 109 (1208)
....+.+|.++|++++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + .+|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 3456789999999999999 799999999999999999887 78889999999999999999 9 9999
Q ss_pred EEECCCcEEEEECCCCeE-----EEEEecC-----CCCEEEEEEe----eCCCE-EEEEECCCeEEEEECCC------Cc
Q 000961 110 SASDDQTIRIWNWQSRTC-----ISVLTGH-----NHYVMCASFH----PKEDL-VVSASLDQTVRVWDIGA------LR 168 (1208)
Q Consensus 110 s~s~Dg~I~iwd~~s~~~-----i~~l~~h-----~~~V~~l~~~----p~~~~-l~s~s~Dg~V~vwdl~~------~~ 168 (1208)
+++.||.|++||+.+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+.. .+
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999998886 8888888 5899999999 99999 99999999999999976 22
Q ss_pred cccccCCCcceeeccccccccccccceEEEEE-----eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 000961 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVL-----EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (1208)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~ 243 (1208)
.....+ ...+.. ..|...|.+++|+|++ ++++++.||.|++||+.+.+. +..
T Consensus 166 ~~~~~~--------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~ 222 (397)
T 1sq9_A 166 TLNWSP--------------------TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP--LYN 222 (397)
T ss_dssp TTCCCC--------------------EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE--EEE
T ss_pred eeeccC--------------------cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce--eEE
Confidence 211000 001111 4588899999999999 999999999999999998876 677
Q ss_pred ecC---c---CCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeEEEeec-------------CCCCEEEEEEeCC
Q 000961 244 LRG---H---MNNVSCVMFHAKQDIIVSNSED---KSIRVWDVTKRTGVQTFRR-------------EHDRFWILASHPE 301 (1208)
Q Consensus 244 l~~---h---~~~V~~l~~sp~g~~l~sgs~d---g~I~vwd~~~~~~~~~~~~-------------~~~~i~~la~sp~ 301 (1208)
+.. | ...|.+++|+|++++|++++.| |.|++||+.+++.+..+.. +...+.+++|+|+
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC
Confidence 777 8 9999999999999999999999 9999999999999999988 8899999999999
Q ss_pred CCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCC--CC------------CCCCcC
Q 000961 302 MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRP--GS------------TSLNQS 367 (1208)
Q Consensus 302 ~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~--~~------------~~~~~~ 367 (1208)
+++|++++. ++.|++||+.+++....+..... ++ ..|...
T Consensus 303 ~~~l~~~~~--------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 356 (397)
T 1sq9_A 303 GETLCSAGW--------------------------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 356 (397)
T ss_dssp SSEEEEEET--------------------------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CCEEEEEeC--------------------------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCc
Confidence 999999884 67788899888776555542100 11 000238
Q ss_pred CeEEEEcCCC----------CEEEEEEecCCCEEEEEEccC
Q 000961 368 PRTLSYSPTE----------NAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 368 i~~l~~spdg----------~~llv~~~~~~g~v~l~~l~~ 398 (1208)
|.+++|+|++ +.+++ ++.+|.+++|++..
T Consensus 357 v~~~~~~~~g~~~~~~~~~~~~l~s--~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 357 VFDVKFLKKGWRSGMGADLNESLCC--VCLDRSIRWFREAG 395 (397)
T ss_dssp EEEEEEECTTTSBSTTCTTSCEEEE--EETTTEEEEEEEEC
T ss_pred eeEEEeccccccccccccccceEEE--ecCCCcEEEEEcCC
Confidence 9999999998 44433 33678999999875
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.2e-30 Score=295.28 Aligned_cols=269 Identities=15% Similarity=0.288 Sum_probs=232.7
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEec--ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD--EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~--~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
.++|+||+++ +||+| .|++|+|||+.+|+.++.+. +|...|++++|+|++++|++|+.||+|++||+++++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999986 77776 59999999999999888764 68889999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~ 168 (1208)
.+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+.++.|+++++++++++.||+|++||+.+.+
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 999998887665 4568999999999999998865 5667888999999999999999999999999999999998754
Q ss_pred cccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEE---EEEeCCCcEEEEECCCCceeEEEeec
Q 000961 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI---VSGADDRQVKLWRMNETKAWEVDTLR 245 (1208)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L---~sgs~dg~I~iwd~~~~~~~~~~~l~ 245 (1208)
.... .......+...|.+++++|++..+ ++++.++.|++|+...... ....
T Consensus 184 ~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~---~~~~ 237 (318)
T 4ggc_A 184 GGWV-----------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAV 237 (318)
T ss_dssp TBSC-----------------------CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE---EEEE
T ss_pred cccc-----------------------ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc---cccc
Confidence 3221 112455678899999999976643 3566789999999998874 3445
Q ss_pred CcCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 246 GHMNNVSCVMFHAKQDIIVSNS--EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 246 ~h~~~V~~l~~sp~g~~l~sgs--~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
.+...+..+.|+|++..+++++ .|+.|++||+.+++++.++.+|.+.|++++|+|++++|++|+.
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 5778899999999999888765 7999999999999999999999999999999999999999984
No 88
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.6e-31 Score=298.89 Aligned_cols=241 Identities=22% Similarity=0.320 Sum_probs=207.2
Q ss_pred EEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC--CeEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEE
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM--HRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIW 120 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~--~~~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iw 120 (1208)
..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.+ .+++.++.+|.+.|.+++|+++ +++|++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45678999999999999999999999999999999974 4678899999999999999864 8899999999999999
Q ss_pred ECCCCe--EEEEEecCCCCEEEEEEeeC--CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceE
Q 000961 121 NWQSRT--CISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1208)
Q Consensus 121 d~~s~~--~i~~l~~h~~~V~~l~~~p~--~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1208)
|+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||++......
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~------------------------- 137 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS------------------------- 137 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-------------------------
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-------------------------
Confidence 998874 56778889999999999997 7899999999999999997642110
Q ss_pred EEEEeccCCCeEEEEEcCC-------------CCEEEEEeCCCcEEEEECCCCce--eEEEeecCcCCCeEEEEEccCC-
Q 000961 197 KYVLEGHDRGVNWAAFHPT-------------LPLIVSGADDRQVKLWRMNETKA--WEVDTLRGHMNNVSCVMFHAKQ- 260 (1208)
Q Consensus 197 ~~~~~~h~~~V~~l~~sp~-------------g~~L~sgs~dg~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~~sp~g- 260 (1208)
...+.+|...|.+++|+|+ +++|++|+.|+.|++||+.++.. .....+.+|...|.+++|+|++
T Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~ 217 (297)
T 2pm7_B 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217 (297)
T ss_dssp CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC
Confidence 1256789999999999997 57999999999999999987652 1356788999999999999984
Q ss_pred --CEEEEEeCCCcEEEEeCCCCe---eEEEe--ecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 261 --DIIVSNSEDKSIRVWDVTKRT---GVQTF--RREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 261 --~~l~sgs~dg~I~vwd~~~~~---~~~~~--~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
.+|++++.|++|++||+.+.. ....+ ..+...+++++|+|++++|++++.
T Consensus 218 ~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 218 LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 899999999999999987643 12233 356778999999999999999884
No 89
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=328.63 Aligned_cols=324 Identities=11% Similarity=0.116 Sum_probs=253.4
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
-...|.+++|||||+++|+++.|++|+ |...+ ..+++|...|.+++|+|+| .++.+.+|+.+.. ...
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~ 80 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLL 80 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEe
Confidence 357899999999999999999999999 75444 4557999999999999998 4555555554322 222
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-----CEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH-----YVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~-----~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
++ .|.+.|.+++|||+|.+|++++.||+|++||.++ ++..+. |.. .|.+++|+|+|++|++|+.||+|++|
T Consensus 81 ~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 81 NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 22 5688999999999999999999999999999644 666667 665 49999999999999999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEE----eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL----EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|+.+...... .......+ .+|...|.+++|+|+| +++++.|+.|++|++.++..
T Consensus 157 d~~~~~l~~~--------------------~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 157 SIRKNSENTP--------------------EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp ECCCCTTTCC--------------------CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred ECCCCccccc--------------------cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence 9987532100 00012233 5688899999999999 88899999999999988774
Q ss_pred e-EEEee-cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEE--eCCCCEEEEEECCCee
Q 000961 239 W-EVDTL-RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS--HPEMNLLAAGHDSGMI 314 (1208)
Q Consensus 239 ~-~~~~l-~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~--sp~~~~la~g~~~gi~ 314 (1208)
. ...++ .+|...|.+++|+ |+.|++++ +++|++||+.+++......+|...++.+++ +|++..++++..+|..
T Consensus 215 ~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~k 291 (588)
T 2j04_A 215 QPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYK 291 (588)
T ss_dssp CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEE
T ss_pred ccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCE
Confidence 2 13455 4788999999999 68899887 699999999988775444479999999999 9999999999977778
Q ss_pred eEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 315 VFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 315 v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
+|... ...+++++..++. .++++++|+...+.. . .+. + ...|.+++|||||+.+++++.
T Consensus 292 lw~~d--~~~~spd~~l~a~-~d~~v~lW~~~g~~l-~--~~~---~---~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 292 VLLED--ELHVTADNIIAPY-LEKKFKKWSTIWNEF-N--NYE---T---TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEESS--SEEEECCCSSHHH-HHHHHHHTTTTTTSS-S--SSC---C---EEEEEEEEECTTSSEEEEEEE
T ss_pred EEeec--cEEECCCceEEEE-cCCEEEEEECCCCce-e--eec---c---ceEEEEEEECCCCCEEEEEEe
Confidence 88877 2335666655554 488999998765442 1 111 1 226899999999998877554
No 90
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.8e-31 Score=308.80 Aligned_cols=282 Identities=17% Similarity=0.280 Sum_probs=239.9
Q ss_pred ceEeecCCCCEEEEEEeCC---CCEEEEEecCCeEEEEECCC-CeEE-EEecccccCEEEEEEEcCCCEEEEEECCCeEE
Q 000961 2 LTKFETKSNRVKGLSFHSK---RPWILASLHSGVIQLWDYRM-GTLI-DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIK 76 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspd---g~~Lasg~~dg~I~iWd~~~-g~~i-~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~ 76 (1208)
+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|.++|++++|+|++++|++++.||.|+
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 4567899999999999999 69999999999999999987 5555 77889999999999999999999999999999
Q ss_pred EEECCCCeEEEEEccCCCCEEEEEE--cCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE
Q 000961 77 VWNYKMHRCLFTLLGHLDYIRTVQF--HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~v~f--s~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s 154 (1208)
+||+.+++.+. +.+|...|.+++| ++++.+|++++.||.|++||+.+++.+..+..|. .+.++.+. ...+++++
T Consensus 112 iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ 187 (368)
T 3mmy_A 112 MWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVAT 187 (368)
T ss_dssp EEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEE
T ss_pred EEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEe
Confidence 99999988776 5569999999999 8999999999999999999999999999988765 56666665 45899999
Q ss_pred CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCE----EEEEeCCCcEEE
Q 000961 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL----IVSGADDRQVKL 230 (1208)
Q Consensus 155 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~----L~sgs~dg~I~i 230 (1208)
.++.+++|++....... ......+...+.++++.++... +++++.||.|++
T Consensus 188 ~~~~i~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 188 AERGLIVYQLENQPSEF-------------------------RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp GGGCEEEEECSSSCEEE-------------------------EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred CCCcEEEEEeccccchh-------------------------hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 99999999997643221 1112233445566666555443 999999999999
Q ss_pred EECCCCce-eEEEeecCcCC------------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEE
Q 000961 231 WRMNETKA-WEVDTLRGHMN------------NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILA 297 (1208)
Q Consensus 231 wd~~~~~~-~~~~~l~~h~~------------~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la 297 (1208)
|++..... .....+.+|.. .|++++|+|++++|++++.||.|++||+.+++.+..+..+...+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 322 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACC 322 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEE
Confidence 99998732 22556666665 799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEECCC
Q 000961 298 SHPEMNLLAAGHDSG 312 (1208)
Q Consensus 298 ~sp~~~~la~g~~~g 312 (1208)
|+|++++|++++.++
T Consensus 323 ~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 323 FNHNGNIFAYASSYD 337 (368)
T ss_dssp ECTTSSCEEEEECCC
T ss_pred ECCCCCeEEEEeccc
Confidence 999999999987654
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.4e-31 Score=315.59 Aligned_cols=277 Identities=26% Similarity=0.501 Sum_probs=242.2
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeE
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1208)
.+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+|.++|++++| ++++|++|+.||+|++||+.++++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 356677988877 7999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE---EEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 86 LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI---SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 86 ~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i---~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
+.++.+|...|.++.|++ ..+++++.||+|++||+.++... ..+.+|...|.++.| +++++++|+.||.|++|
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 281 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence 999999999999999974 48999999999999999987655 677899999999999 67899999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 242 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~ 242 (1208)
|+.+.+. ...+.+|...|.+++|+ +.++++|+.||.|++||+.+++. +.
T Consensus 282 d~~~~~~---------------------------~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~--~~ 330 (435)
T 1p22_A 282 NTSTCEF---------------------------VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC--LR 330 (435)
T ss_dssp ETTTCCE---------------------------EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE--EE
T ss_pred ECCcCcE---------------------------EEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCE--EE
Confidence 9987542 33567899999999995 57999999999999999999887 78
Q ss_pred eecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe---------eEEEeecCCCCEEEEEEeCCCCEEEEEECCCe
Q 000961 243 TLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT---------GVQTFRREHDRFWILASHPEMNLLAAGHDSGM 313 (1208)
Q Consensus 243 ~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~---------~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi 313 (1208)
.+.+|...|.+++| ++.+|++|+.||.|++||+.++. .+..+..|.+.|.+++| +++++++|+
T Consensus 331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s---- 402 (435)
T 1p22_A 331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS---- 402 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECC----
T ss_pred EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEe----
Confidence 88999999999999 78899999999999999987665 78888889999999998 677787777
Q ss_pred eeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcce
Q 000961 314 IVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT 351 (1208)
Q Consensus 314 ~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~ 351 (1208)
.|+.|++||+.++...
T Consensus 403 ----------------------~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 403 ----------------------HDDTILIWDFLNDPAA 418 (435)
T ss_dssp ----------------------SSSEEEEEC-------
T ss_pred ----------------------CCCEEEEEECCCCCCc
Confidence 4778889998876543
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-30 Score=291.62 Aligned_cols=286 Identities=20% Similarity=0.298 Sum_probs=247.1
Q ss_pred CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iw 120 (1208)
.+....+.+|.++|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3778889999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC---eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEE
Q 000961 121 NWQSR---TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1208)
Q Consensus 121 d~~s~---~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1208)
++... +.+..+.+|...|.++.| +++++++++.||.|++||... ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~-----------------------------~~ 135 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGS-----------------------------LV 135 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTE-----------------------------EE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCc-----------------------------EE
Confidence 98654 667788999999999999 477999999999999999211 23
Q ss_pred EEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeecC-cCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000961 198 YVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (1208)
Q Consensus 198 ~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~-h~~~V~~l~~sp~g~~l~sgs~dg~I~vw 275 (1208)
..+..|...+.+++|+| +++++++++.||.|++||. .+. ...+.. |...+.+++|+|++. +++++.||.|++|
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~ 210 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKV--IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLV 210 (313)
T ss_dssp EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEE--EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEE
T ss_pred EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--Cce--EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEE
Confidence 46778999999999998 8999999999999999993 332 555666 899999999999998 9999999999999
Q ss_pred eCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEe
Q 000961 276 DVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP 355 (1208)
Q Consensus 276 d~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~ 355 (1208)
|+.+++.+..+..|...+.+++|+|++. +++++ .++.|++||+.+++....+.
T Consensus 211 d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~--------------------------~dg~v~iwd~~~~~~~~~~~ 263 (313)
T 3odt_A 211 DMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCG--------------------------EDRTVRIWSKENGSLKQVIT 263 (313)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEE--------------------------TTSEEEEECTTTCCEEEEEE
T ss_pred ECCchhhhhhhhcCCceEEEEEEecCCC-EEEEe--------------------------cCCEEEEEECCCCceeEEEe
Confidence 9999999999999999999999999995 66666 37788999999887655543
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCC
Q 000961 356 IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1208)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~ 400 (1208)
.. ...+.+++|+|+++ +++ ++.+|.+++|++....
T Consensus 264 ~~-------~~~i~~~~~~~~~~-~~~--~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 264 LP-------AISIWSVDCMSNGD-IIV--GSSDNLVRIFSQEKSR 298 (313)
T ss_dssp CS-------SSCEEEEEECTTSC-EEE--EETTSCEEEEESCGGG
T ss_pred cc-------CceEEEEEEccCCC-EEE--EeCCCcEEEEeCCCCc
Confidence 32 22899999999998 333 3367899999988643
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.8e-31 Score=309.89 Aligned_cols=284 Identities=11% Similarity=0.087 Sum_probs=228.0
Q ss_pred CCCEEEEEEeCCCCEEEEEecCC-------eEEEEECCCCeE----------EEEecccccCEEEEEEEcCCCEEEEEE-
Q 000961 9 SNRVKGLSFHSKRPWILASLHSG-------VIQLWDYRMGTL----------IDRFDEHDGPVRGVHFHKSQPLFVSGG- 70 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg-------~I~iWd~~~g~~----------i~~l~~h~~~V~~l~fsp~~~~Lasgs- 70 (1208)
.-+|.+++|+||+++|++|+.+. .|++|++..+.. ...+..|...|.+++++ ++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999997543 599999865421 12456788889888765 45666654
Q ss_pred ----------CCCeEEEEECCCCeE----EEEE-----ccCCCCEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEE
Q 000961 71 ----------DDYKIKVWNYKMHRC----LFTL-----LGHLDYIRTVQFHHEYPWIVSAS--DDQTIRIWNWQSRTCIS 129 (1208)
Q Consensus 71 ----------~Dg~I~vWd~~~~~~----~~~l-----~~h~~~I~~v~fs~d~~~l~s~s--~Dg~I~iwd~~s~~~i~ 129 (1208)
.|+.+++|++.+... .... ..+...+++++|||||+++++++ .|++|+|||+.+++++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 477899999865422 1111 23456799999999999887654 68999999999999998
Q ss_pred EEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEE
Q 000961 130 VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1208)
Q Consensus 130 ~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 209 (1208)
.+. |.+.|.+++|+|+|+++++++.+ .+++|+..+.+.. ......+|...|.+
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~-------------------------~~~~~~~~~~~v~~ 224 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI-------------------------ARKTDFDKNWSLSK 224 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE-------------------------EEECCCCTTEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcce-------------------------eeeecCCCCCCEEE
Confidence 886 77889999999999999999855 5666665543321 12234568888999
Q ss_pred EEEcCCCCEEEEEeCCC----cEEEEECCCCcee--EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 000961 210 AAFHPTLPLIVSGADDR----QVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (1208)
Q Consensus 210 l~~sp~g~~L~sgs~dg----~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~ 283 (1208)
++|+|+++++++++.|+ .+++|+....... ....+.+|...|++++|+|+|++|++|+.|++|+|||+.+++++
T Consensus 225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS 304 (365)
T ss_dssp EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE
Confidence 99999999999999887 6888998776542 24567889999999999999999999999999999999999999
Q ss_pred EEe-ecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccC
Q 000961 284 QTF-RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST 347 (1208)
Q Consensus 284 ~~~-~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~ 347 (1208)
.++ ..|...|++++|+||+++|++|+. |++|++|++..
T Consensus 305 ~~~~~gH~~~V~~v~fSpdg~~laS~S~--------------------------D~tvrvw~ip~ 343 (365)
T 4h5i_A 305 KIFKQAHSFAITEVTISPDSTYVASVSA--------------------------ANTIHIIKLPL 343 (365)
T ss_dssp EEETTSSSSCEEEEEECTTSCEEEEEET--------------------------TSEEEEEECCT
T ss_pred EEecCcccCCEEEEEECCCCCEEEEEeC--------------------------CCeEEEEEcCC
Confidence 886 679999999999999999999994 78899999865
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-30 Score=302.74 Aligned_cols=293 Identities=16% Similarity=0.254 Sum_probs=236.7
Q ss_pred EEecccccCEEEEEEEcCCCEEE-EEEC---CCeEEEEECCCCeEEEEE-ccCCCCEEEEEEcCC---CCEEEEEECCCc
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFV-SGGD---DYKIKVWNYKMHRCLFTL-LGHLDYIRTVQFHHE---YPWIVSASDDQT 116 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~La-sgs~---Dg~I~vWd~~~~~~~~~l-~~h~~~I~~v~fs~d---~~~l~s~s~Dg~ 116 (1208)
..+.+|..+|++++|+|+++.++ +|+. ||.|++||+.+++..... .+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 44568999999999999997555 5555 899999999988765443 379999999999999 699999999999
Q ss_pred EEEEECCCCe-EEEEEecCCCCEEEEEE------eeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeecccccccc
Q 000961 117 IRIWNWQSRT-CISVLTGHNHYVMCASF------HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189 (1208)
Q Consensus 117 I~iwd~~s~~-~i~~l~~h~~~V~~l~~------~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1208)
|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||+.+.+...
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~------------------ 153 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV------------------ 153 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS------------------
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc------------------
Confidence 9999999888 88999999999999965 6789999999999999999998754211
Q ss_pred ccccceEEEEEecc----CCCeEEEE----EcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEcc---
Q 000961 190 GGVDAVVKYVLEGH----DRGVNWAA----FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA--- 258 (1208)
Q Consensus 190 ~~~~~~~~~~~~~h----~~~V~~l~----~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp--- 258 (1208)
..+..| ...+.+++ |+|+++++++++.||.|++||+.+.+. .....|...|.+++|+|
T Consensus 154 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 154 --------ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---RWETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp --------EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE---EEEEECSSCEEEEEESCSSS
T ss_pred --------eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce---eeecCCCCceEEEEcCCCCC
Confidence 122223 33788888 789999999999999999999999884 34467889999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEee-----cCCCCEEEEEEeCCCC-EEEEEECCCeeeEeeCCCcceEEecCCEE
Q 000961 259 KQDIIVSNSEDKSIRVWDVTKRTGVQTFR-----REHDRFWILASHPEMN-LLAAGHDSGMIVFKLERERPAFAVSGDSL 332 (1208)
Q Consensus 259 ~g~~l~sgs~dg~I~vwd~~~~~~~~~~~-----~~~~~i~~la~sp~~~-~la~g~~~gi~v~~l~~~~~~~s~~~~~L 332 (1208)
+++++++++.||.|++||+.+++....+. .+...+++++|+|++. ++++++.
T Consensus 223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------------- 280 (357)
T 3i2n_A 223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG---------------------- 280 (357)
T ss_dssp SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET----------------------
T ss_pred CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC----------------------
Confidence 99999999999999999998776655444 7889999999999998 7888874
Q ss_pred EEEeCCeEEEEEccCCcce-----------------eeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEE
Q 000961 333 FYAKDRFLRYYEFSTQKDT-----------------QVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYV 395 (1208)
Q Consensus 333 ~~~~d~~i~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~ 395 (1208)
|+.|++||+.++... .+..+.. + ...|.+++|+|+++.++++++ .++.+++|+
T Consensus 281 ----dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~---~~~v~~~~~s~~~~~l~~s~~-~d~~i~iw~ 350 (357)
T 3i2n_A 281 ----AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL--S---TQPISSLDWSPDKRGLCVCSS-FDQTVRVLI 350 (357)
T ss_dssp ----TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC--C---SSCEEEEEECSSSTTEEEEEE-TTSEEEEEE
T ss_pred ----CCcEEEeecCCCcccccccCCCCccccccccceeecccc--C---CCCeeEEEEcCCCCeEEEEec-CCCcEEEEE
Confidence 556777777654322 2223332 2 338999999999998875444 678999999
Q ss_pred ccC
Q 000961 396 IPK 398 (1208)
Q Consensus 396 l~~ 398 (1208)
+..
T Consensus 351 ~~~ 353 (357)
T 3i2n_A 351 VTK 353 (357)
T ss_dssp ECC
T ss_pred CCC
Confidence 875
No 95
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=6.5e-31 Score=305.75 Aligned_cols=291 Identities=23% Similarity=0.363 Sum_probs=241.9
Q ss_pred ecccccCEEEEEEEcC----CCEEEEEECCCeEEEEECCCCeEEEEEcc-----CCCCEEEEEEcCC----CCEEEEEEC
Q 000961 47 FDEHDGPVRGVHFHKS----QPLFVSGGDDYKIKVWNYKMHRCLFTLLG-----HLDYIRTVQFHHE----YPWIVSASD 113 (1208)
Q Consensus 47 l~~h~~~V~~l~fsp~----~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~-----h~~~I~~v~fs~d----~~~l~s~s~ 113 (1208)
..+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 3589999999999984 55677777777999999998877766654 5578999999999 669999999
Q ss_pred CCcEEEEECCCCeEEEEEecCCCCEEEEEEee-CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccc
Q 000961 114 DQTIRIWNWQSRTCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192 (1208)
Q Consensus 114 Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1208)
||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+.+..
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------- 151 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV---------------------- 151 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE----------------------
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE----------------------
Confidence 99999999999999999999999999999999 8899999999999999999875432
Q ss_pred cceEEEEE---eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--------------------------EEEe
Q 000961 193 DAVVKYVL---EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW--------------------------EVDT 243 (1208)
Q Consensus 193 ~~~~~~~~---~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~--------------------------~~~~ 243 (1208)
..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.. ....
T Consensus 152 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 152 -----AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp -----EEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred -----EEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 233 579999999999999999999999999999999876531 0122
Q ss_pred ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee--------------EEEeecCCCCEEEEEEeCC--CCEEEE
Q 000961 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG--------------VQTFRREHDRFWILASHPE--MNLLAA 307 (1208)
Q Consensus 244 l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~--------------~~~~~~~~~~i~~la~sp~--~~~la~ 307 (1208)
...|...|.+++|+ ++++++++.||.|++||+.++.. +..+..+...+++++|+|+ ++++++
T Consensus 227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 227 RDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp CSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred ccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 33499999999999 77999999999999999987644 7778888888999999999 999998
Q ss_pred EECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCccee--eEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 308 GHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ--VIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 308 g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
|+. ++.|++||+.+++... ...+..+.+ ...|.+++|+|++++++++
T Consensus 305 ~~~--------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~-- 353 (366)
T 3k26_A 305 GNQ--------------------------VGKLYVWDLEVEDPHKAKCTTLTHHKC---GAAIRQTSFSRDSSILIAV-- 353 (366)
T ss_dssp ECT--------------------------TSCEEEEECCSSSGGGCEEEEECCTTC---CSCEEEEEECTTSSEEEEE--
T ss_pred Eec--------------------------CCcEEEEECCCCCCccccceEEccccc---CCceEEEEeCCCCCeEEEE--
Confidence 874 7788999999876543 223333322 2389999999999977653
Q ss_pred cCCCEEEEEEcc
Q 000961 386 VDGGSYELYVIP 397 (1208)
Q Consensus 386 ~~~g~v~l~~l~ 397 (1208)
+.+|.+++|++.
T Consensus 354 ~~dg~i~iwd~~ 365 (366)
T 3k26_A 354 CDDASIWRWDRL 365 (366)
T ss_dssp ETTSEEEEEEC-
T ss_pred eCCCEEEEEEec
Confidence 367899999975
No 96
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.6e-32 Score=322.10 Aligned_cols=315 Identities=11% Similarity=0.095 Sum_probs=239.2
Q ss_pred cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 000961 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (1208)
Q Consensus 48 ~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~ 127 (1208)
++....|.+++|+|||+++||++.|++|+ |.+.++++ .+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-- 77 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQN-- 77 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSS--
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCc--
Confidence 34567899999999999999999999999 76666544 7999999999999999 4666666654322
Q ss_pred EEEEe-cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC-
Q 000961 128 ISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR- 205 (1208)
Q Consensus 128 i~~l~-~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~- 205 (1208)
..+. .|...|.+++|+|+|.+|++++.||.|++||..+ ....+. |..
T Consensus 78 -~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----------------------------~l~~l~-~~~~ 126 (588)
T 2j04_A 78 -GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----------------------------MLTNLD-SKGN 126 (588)
T ss_dssp -CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----------------------------EEEECC-CSSC
T ss_pred -eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----------------------------eeeecc-CCCc
Confidence 2232 5688999999999999999999999999999543 112334 544
Q ss_pred ----CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eEEEee----cCcCCCeEEEEEccCCCEEEEEeCCCcE
Q 000961 206 ----GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-----WEVDTL----RGHMNNVSCVMFHAKQDIIVSNSEDKSI 272 (1208)
Q Consensus 206 ----~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~-----~~~~~l----~~h~~~V~~l~~sp~g~~l~sgs~dg~I 272 (1208)
.|.+++|||+|++|++|+.||+|++||+.++.. ..+.++ .+|.+.|.+++|+|+| +++++.|++|
T Consensus 127 ~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tV 204 (588)
T 2j04_A 127 LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSV 204 (588)
T ss_dssp STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCE
T ss_pred cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeE
Confidence 599999999999999999999999999998752 124565 6788899999999999 8889999999
Q ss_pred EEEeCCCCee---EEEee-cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCC
Q 000961 273 RVWDVTKRTG---VQTFR-REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ 348 (1208)
Q Consensus 273 ~vwd~~~~~~---~~~~~-~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~ 348 (1208)
++||+.++.. .+++. .|...|++++|+ ++.+|+++ ++.|++||+.++
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~---------------------------~~tIkLWd~~~~ 255 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC---------------------------PGYVHKIDLKNY 255 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC---------------------------SSEEEEEETTTT
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe---------------------------CCeEEEEECCCC
Confidence 9999988773 35563 677889999999 68888876 457888998876
Q ss_pred cceeeEeecCCCCCCCCcCCeEEEE--cCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcE
Q 000961 349 KDTQVIPIRRPGSTSLNQSPRTLSY--SPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRF 426 (1208)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~l~~--spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~ 426 (1208)
+..... . +| ...+..++| +|++..+++ +.++|+ ++|... .+.|+||+..
T Consensus 256 ~~~~~~-~---gh---~~~V~~va~~~s~d~~~La~--a~edG~-klw~~d-------------------~~~~spd~~l 306 (588)
T 2j04_A 256 SISSLK-T---GS---LENFHIIPLNHEKESTILLM--SNKTSY-KVLLED-------------------ELHVTADNII 306 (588)
T ss_dssp EEEEEE-C---SC---CSCCCEEEETTCSSCEEEEE--CSSCEE-EEEESS-------------------SEEEECCCSS
T ss_pred eEEEEE-c---CC---CceEEEEEeeeCCCCCEEEE--EcCCCC-EEEeec-------------------cEEECCCceE
Confidence 542221 1 23 227888888 888865544 335677 888755 1457778776
Q ss_pred EEEEcCCCEEEEEecCCceeeeecCCcceEEEEEeCCccEEEE
Q 000961 427 AVLDKSSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNLLCR 469 (1208)
Q Consensus 427 l~~~~~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~Las 469 (1208)
+++. |+++++|+..++....+.....|.+++|||||+++|+
T Consensus 307 ~a~~--d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 307 APYL--EKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp HHHH--HHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEE
T ss_pred EEEc--CCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEE
Confidence 6664 6778888777555545544335666777777766655
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=2.8e-31 Score=318.05 Aligned_cols=304 Identities=14% Similarity=0.212 Sum_probs=236.5
Q ss_pred EEEEecccccCEEEEEEEcC-CCEEEEEECCCeEEEEECCCCeE--EEEEccCCCCEEEEEEcC-CCCEEEEEECCCcEE
Q 000961 43 LIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKMHRC--LFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIR 118 (1208)
Q Consensus 43 ~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~~~~--~~~l~~h~~~I~~v~fs~-d~~~l~s~s~Dg~I~ 118 (1208)
......+|...|+||+|||. +.+||+|+.||+|+|||+.+++. ...+.+|.+.|++++|+| ++.+|++++.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34455678999999999994 56999999999999999987654 445568999999999998 688999999999999
Q ss_pred EEECCCCeEEEEEec--CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceE
Q 000961 119 IWNWQSRTCISVLTG--HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1208)
Q Consensus 119 iwd~~s~~~i~~l~~--h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1208)
+||++++........ +...+.+++|+|++.+|++|+.||.|++||+++....
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~-------------------------- 244 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW-------------------------- 244 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--------------------------
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--------------------------
Confidence 999987665444433 3446789999999999999999999999998653211
Q ss_pred EEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcee-EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000961 197 KYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW-EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 197 ~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~-~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~v 274 (1208)
.+.+|...|++++|+|+++ ++++|+.|+.|++||+.+.+.. ......+|...|++++|+|+|++|++++.||.|++
T Consensus 245 --~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~i 322 (435)
T 4e54_B 245 --NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRV 322 (435)
T ss_dssp --CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEE
T ss_pred --EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEE
Confidence 3567999999999999886 7889999999999999876542 13344679999999999999999999999999999
Q ss_pred EeCCCCeeEEEeecCCC------CEEEEEEeCCCCEEEEEEC-C-CeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEcc
Q 000961 275 WDVTKRTGVQTFRREHD------RFWILASHPEMNLLAAGHD-S-GMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS 346 (1208)
Q Consensus 275 wd~~~~~~~~~~~~~~~------~i~~la~sp~~~~la~g~~-~-gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~ 346 (1208)
||+.++.....+..+.. ......|+|++.+++++.. + ...++... .++.|++||..
T Consensus 323 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----------------~~~~i~iwd~~ 386 (435)
T 4e54_B 323 YSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPY----------------ELRTIDVFDGN 386 (435)
T ss_dssp EESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTT----------------CCCCEEEECSS
T ss_pred EECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEec----------------CCCEEEEEECC
Confidence 99999988877765543 2345678999988887742 2 22221110 45789999999
Q ss_pred CCcceeeEeecCCCCCCCCcCCeEE-EEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 347 TQKDTQVIPIRRPGSTSLNQSPRTL-SYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~l-~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
+++.+..+.. ++ ...|.++ +|+|+|+.|+. ++ ++.|++|++...
T Consensus 387 ~g~~~~~l~~---~~---~~~v~s~~~fspdg~~las--g~-d~~i~iW~~~~g 431 (435)
T 4e54_B 387 SGKMMCQLYD---PE---SSGISSLNEFNPMGDTLAS--AM-GYHILIWSQQEA 431 (435)
T ss_dssp SCCEEEEECC---SS---CCCCCCEEEECTTSSCEEE--EC-SSEEEECCCC--
T ss_pred CCcEEEEEeC---CC---CCcEEEEEEECCCCCEEEE--Ec-CCcEEEEECCcC
Confidence 9877544321 22 2267777 69999997654 32 578999998754
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8e-30 Score=298.05 Aligned_cols=245 Identities=23% Similarity=0.343 Sum_probs=213.0
Q ss_pred CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC--CCeEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCc
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK--MHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQT 116 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~--~~~~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~ 116 (1208)
|+++..+.+|.++|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 45677788999999999999999999999999999999998 66778889999999999999987 899999999999
Q ss_pred EEEEECCCCe--EEEEEecCCCCEEEEEEeeC--CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccc
Q 000961 117 IRIWNWQSRT--CISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192 (1208)
Q Consensus 117 I~iwd~~s~~--~i~~l~~h~~~V~~l~~~p~--~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1208)
|++||+.+++ .+..+..|...|.+++|+|+ ++++++++.||.|++||+......
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------------------- 138 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------------------- 138 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------------------
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------------------
Confidence 9999999987 77788889999999999999 899999999999999999874322
Q ss_pred cceEEEEEeccCCCeEEEEEcC-------------CCCEEEEEeCCCcEEEEECCCCce--eEEEeecCcCCCeEEEEEc
Q 000961 193 DAVVKYVLEGHDRGVNWAAFHP-------------TLPLIVSGADDRQVKLWRMNETKA--WEVDTLRGHMNNVSCVMFH 257 (1208)
Q Consensus 193 ~~~~~~~~~~h~~~V~~l~~sp-------------~g~~L~sgs~dg~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~~s 257 (1208)
....+.+|...|.+++|+| ++.+|++++.||.|++||+.+... .....+.+|...|.+++|+
T Consensus 139 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 139 ---SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp ---CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred ---eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC
Confidence 1235678999999999999 699999999999999999987653 2356788999999999999
Q ss_pred cC---CCEEEEEeCCCcEEEEeCCCCe---eEEEee--cCCCCEEEEEEeCCCCEEEEEEC
Q 000961 258 AK---QDIIVSNSEDKSIRVWDVTKRT---GVQTFR--REHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 258 p~---g~~l~sgs~dg~I~vwd~~~~~---~~~~~~--~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
|+ +++|++++.||.|++||+.++. ...... .+...+++++|+|+++++++++.
T Consensus 216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 99 8999999999999999998864 222222 36778999999999999998874
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.4e-29 Score=296.46 Aligned_cols=288 Identities=17% Similarity=0.245 Sum_probs=242.3
Q ss_pred ccccC--EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEcc-CCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 000961 49 EHDGP--VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG-HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR 125 (1208)
Q Consensus 49 ~h~~~--V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~-h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~ 125 (1208)
+|... +.+++|++ ..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||+.++
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 45544 44466654 5688889999999999999998887765 8899999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC
Q 000961 126 TCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR 205 (1208)
Q Consensus 126 ~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 205 (1208)
+.+..+.+|...|.++.|+ ++.+++++.||.|++||++.... ....+.+|..
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--------------------------~~~~~~~~~~ 218 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH--------------------------QIGTLQGHSS 218 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC--------------------------EEEEEECCSS
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc--------------------------eeeEEcCCCC
Confidence 9999999999999999995 57999999999999999975221 2336778999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCC-EEEEEe--CCCcEEEEeCCCCee
Q 000961 206 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNS--EDKSIRVWDVTKRTG 282 (1208)
Q Consensus 206 ~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~-~l~sgs--~dg~I~vwd~~~~~~ 282 (1208)
.|.+++|+|++++|++|+.||.|++||+.+.+. +..+..|...|.+++|+|++. ++++++ .|+.|++||+.+++.
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCSSE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence 999999999999999999999999999999876 777889999999999999764 556654 799999999999999
Q ss_pred EEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCC
Q 000961 283 VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGST 362 (1208)
Q Consensus 283 ~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 362 (1208)
+..+. +...+.+++|+|+++.+++++.. .++.|++|++.+++......+..+.
T Consensus 297 ~~~~~-~~~~v~~~~~s~~~~~l~~~~g~------------------------~dg~i~v~~~~~~~~~~~~~~~~h~-- 349 (401)
T 4aez_A 297 VNTVD-AGSQVTSLIWSPHSKEIMSTHGF------------------------PDNNLSIWSYSSSGLTKQVDIPAHD-- 349 (401)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECT------------------------TTCEEEEEEEETTEEEEEEEEECCS--
T ss_pred EEEEe-CCCcEEEEEECCCCCeEEEEeec------------------------CCCcEEEEecCCccceeEEEecCCC--
Confidence 88886 56789999999999999885421 3778899999887766665555432
Q ss_pred CCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCC
Q 000961 363 SLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1208)
Q Consensus 363 ~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~ 400 (1208)
..+.+++|+|+++++++ ++.||.+++|++....
T Consensus 350 ---~~v~~~~~s~dg~~l~s--~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 350 ---TRVLYSALSPDGRILST--AASDENLKFWRVYDGD 382 (401)
T ss_dssp ---SCCCEEEECTTSSEEEE--ECTTSEEEEEECCC--
T ss_pred ---CCEEEEEECCCCCEEEE--EeCCCcEEEEECCCCc
Confidence 38999999999997754 3467999999998653
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.3e-30 Score=298.03 Aligned_cols=241 Identities=20% Similarity=0.293 Sum_probs=200.4
Q ss_pred EecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe--EEEEEccCCCCEEEEEEcC--CCCEEEEEECCCcEEEEE
Q 000961 46 RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 46 ~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~--~~~~l~~h~~~I~~v~fs~--d~~~l~s~s~Dg~I~iwd 121 (1208)
.+.+|.++|++++|+|++++|++|+.|++|+|||+.+++ ++.++.+|.+.|.+++|++ ++++|++++.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 346899999999999999999999999999999998775 5678899999999999986 488999999999999999
Q ss_pred CCCC--eEEEEEecCCCCEEEEEEeeC--CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEE
Q 000961 122 WQSR--TCISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1208)
Q Consensus 122 ~~s~--~~i~~l~~h~~~V~~l~~~p~--~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1208)
+.++ ..+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+.+..... ..
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~------------------------~~ 143 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE------------------------VK 143 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE------------------------EC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc------------------------ee
Confidence 9887 466778899999999999998 7899999999999999987642110 01
Q ss_pred EEEeccCCCeEEEEEcCC-----------------CCEEEEEeCCCcEEEEECCCCce-eEEEeecCcCCCeEEEEEccC
Q 000961 198 YVLEGHDRGVNWAAFHPT-----------------LPLIVSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 198 ~~~~~h~~~V~~l~~sp~-----------------g~~L~sgs~dg~I~iwd~~~~~~-~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..... .....+.+|...|.+++|+|+
T Consensus 144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~ 223 (316)
T 3bg1_A 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS 223 (316)
T ss_dssp CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence 134568888999999987 46899999999999999976532 236778999999999999998
Q ss_pred C----CEEEEEeCCCcEEEEeCCCC---e-eEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 260 Q----DIIVSNSEDKSIRVWDVTKR---T-GVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 260 g----~~l~sgs~dg~I~vwd~~~~---~-~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
+ ++|++++.||+|++|++.+. . ....+..+...+++++|+|++++|++++.
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred CCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 6 89999999999999998762 1 22344567889999999999999999884
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.7e-30 Score=307.68 Aligned_cols=270 Identities=17% Similarity=0.231 Sum_probs=227.9
Q ss_pred CEEEEEEeCCCCEEE-EEecCCeEEEEECCCCe----EEEEecccccCEEEEEEEc-CCCEEEEEECCCeEEEEECCCC-
Q 000961 11 RVKGLSFHSKRPWIL-ASLHSGVIQLWDYRMGT----LIDRFDEHDGPVRGVHFHK-SQPLFVSGGDDYKIKVWNYKMH- 83 (1208)
Q Consensus 11 ~V~~lafspdg~~La-sg~~dg~I~iWd~~~g~----~i~~l~~h~~~V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~~- 83 (1208)
....++++|+...++ +++.+|.|+||++.... .+..+.+|.++|++++|+| ++.+|++|+.||+|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 445688998876554 46789999999986542 3456778999999999999 9999999999999999999987
Q ss_pred ------eEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEE--ecCCCCEEEEEEeeCCCEEEEEE
Q 000961 84 ------RCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVL--TGHNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 84 ------~~~~~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~l--~~h~~~V~~l~~~p~~~~l~s~s 154 (1208)
+++..+.+|...|.+++|+|++ .+|++++.||+|++||+.+++.+..+ .+|...|.+++|+|++++|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 6788899999999999999998 69999999999999999999999999 88999999999999999999999
Q ss_pred CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE-eccCCC-eEEEEEcCCCCEEEEE---eCCCcEE
Q 000961 155 LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL-EGHDRG-VNWAAFHPTLPLIVSG---ADDRQVK 229 (1208)
Q Consensus 155 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~-V~~l~~sp~g~~L~sg---s~dg~I~ 229 (1208)
.||.|++||+++.+.. ..+ .+|... +.+++|+|++.+|++| +.|+.|+
T Consensus 196 ~d~~i~iwd~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVV---------------------------AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp TTSEEEEEETTTTEEE---------------------------EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred cCCcEEEEeCCCCcee---------------------------eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 9999999999874432 233 567665 8999999999999999 7899999
Q ss_pred EEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCee-EEEeec--CCCCEEEEEEeCCCCEE
Q 000961 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVS-NSEDKSIRVWDVTKRTG-VQTFRR--EHDRFWILASHPEMNLL 305 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~s-gs~dg~I~vwd~~~~~~-~~~~~~--~~~~i~~la~sp~~~~l 305 (1208)
+||+.+.+.........|...+.+++|+|+++++++ ++.||.|++||+.+++. +..+.. +...+.+++|+|++.++
T Consensus 249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccc
Confidence 999988664212223357788999999999999975 55799999999998874 444443 45889999999998876
Q ss_pred EE
Q 000961 306 AA 307 (1208)
Q Consensus 306 a~ 307 (1208)
++
T Consensus 329 ~s 330 (402)
T 2aq5_A 329 VN 330 (402)
T ss_dssp GG
T ss_pred ee
Confidence 64
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=5e-30 Score=303.10 Aligned_cols=345 Identities=16% Similarity=0.180 Sum_probs=245.4
Q ss_pred CCeEEEEECCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEe-------------cCCCC
Q 000961 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTCISVLT-------------GHNHY 137 (1208)
Q Consensus 72 Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~-d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~-------------~h~~~ 137 (1208)
++.+++|+++.++....+.+|.+.|.+++|+| ++++|++++.||.|++||+.++.....+. +|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 35678888888888888999999999999999 99999999999999999999876544433 59999
Q ss_pred EEEEEEee-CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC
Q 000961 138 VMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1208)
Q Consensus 138 V~~l~~~p-~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 216 (1208)
|.+++|+| ++.+|++++.||.|++||+.+.+.. ....+...+.++.++|.+
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 153 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA----------------------------DVFNFEETVYSHHMSPVS 153 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE----------------------------EEEECSSCEEEEEECSSC
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc----------------------------eeccCCCceeeeEeecCC
Confidence 99999999 6789999999999999999875432 122367789999999854
Q ss_pred ---CEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe-eEEEe-----
Q 000961 217 ---PLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTKRT-GVQTF----- 286 (1208)
Q Consensus 217 ---~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~-~l~sgs~dg~I~vwd~~~~~-~~~~~----- 286 (1208)
.++++++.+|.|++||+.+++. +..+.+|...|++++|+|+++ ++++++.||.|++||+.++. .+..+
T Consensus 154 ~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 154 TKHCLVAVGTRGPKVQLCDLKSGSC--SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp SSCCEEEEEESSSSEEEEESSSSCC--CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred CCCcEEEEEcCCCeEEEEeCCCcce--eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 4999999999999999998876 778889999999999999998 58999999999999998765 34444
Q ss_pred ----------ecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEee
Q 000961 287 ----------RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (1208)
Q Consensus 287 ----------~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~ 356 (1208)
..+...+.+++|+|+++++++++. ++.+++||+.+++.......
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------------dg~i~vwd~~~~~~~~~~~~ 285 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT--------------------------DNRMRLWNSSNGENTLVNYG 285 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET--------------------------TSCEEEEETTTCCBCCCCCC
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEecC--------------------------CCeEEEEECCCCccceeccc
Confidence 457788999999999999999884 67788999988766433322
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEE
Q 000961 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQV 436 (1208)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I 436 (1208)
..... . ...+........+..+++++ .++.+.+|++... .....+.+|.+.|.+++|+|+++++++++.||.|
T Consensus 286 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 358 (408)
T 4a11_B 286 KVCNN-S-KKGLKFTVSCGCSSEFVFVP--YGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI 358 (408)
T ss_dssp CCCCC-C-SSCCCCEECCSSSSCEEEEE--ETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ccccc-c-cccceeEEecCCCceEEEEe--cCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeE
Confidence 21111 0 11222222222233333332 3589999998764 3344567899999999999999999999999999
Q ss_pred EEEecCC-ceeeeecCCcceEEEEEeCCccEE-EE--eCCeEEEEEcCC
Q 000961 437 LVKNLKN-EVVKKSILPIAADAIFYAGTGNLL-CR--AEDRVVIFDLQQ 481 (1208)
Q Consensus 437 ~Iwdl~~-~~~~~l~~~~~v~~i~~s~dg~~L-as--~dg~v~lwdl~~ 481 (1208)
++|++.. +.+......... ..+.+..... .+ .++.+.+|+...
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 359 LAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEEEECC------------------------------------------
T ss_pred EEEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecCCcc
Confidence 9999984 343333322222 2223322222 22 478999998653
No 103
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=9.7e-29 Score=328.66 Aligned_cols=452 Identities=8% Similarity=-0.011 Sum_probs=336.0
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecC------CeEEEEECCCCeEEEEecccccCE-------EEEEEEcCCCEEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHS------GVIQLWDYRMGTLIDRFDEHDGPV-------RGVHFHKSQPLFVSG 69 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~d------g~I~iWd~~~g~~i~~l~~h~~~V-------~~l~fsp~~~~Lasg 69 (1208)
+.+.+|...|.+++|||||++||+++.+ ..|.+||..+++ ...+..|...+ .+++|+|||++++++
T Consensus 46 ~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~ 124 (1045)
T 1k32_A 46 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST 124 (1045)
T ss_dssp EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEE
Confidence 5688899999999999999999988643 379999998877 67788899888 999999999977777
Q ss_pred ECC------CeEEEEECCCCeEE-------------------------------------------------EEEccCCC
Q 000961 70 GDD------YKIKVWNYKMHRCL-------------------------------------------------FTLLGHLD 94 (1208)
Q Consensus 70 s~D------g~I~vWd~~~~~~~-------------------------------------------------~~l~~h~~ 94 (1208)
+.+ ..|.+|++.+++.. ..+.+|..
T Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~ 204 (1045)
T 1k32_A 125 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST 204 (1045)
T ss_dssp CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred CCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence 644 46888887655422 12345777
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcccccc
Q 000961 95 YIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVS 173 (1208)
Q Consensus 95 ~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~ 173 (1208)
.+.++.|+++ ..+++++.|+++.+|.+.. +.....+..|. .+...+|+|+|+.|+++. ++.|.+||+...... ..
T Consensus 205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l 280 (1045)
T 1k32_A 205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KI 280 (1045)
T ss_dssp CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE-EC
T ss_pred cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEee-ee
Confidence 8888999988 5667778889999998653 44455566555 356779999999888885 899999998432211 00
Q ss_pred CCCcceeeccccccccccccceEEEEEeccCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCC-Ce
Q 000961 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN-NV 251 (1208)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~-~V 251 (1208)
.. ... ........|...+.+++|+ |+|+.|++++ ++.|.+|+..++. ...+..|.. .+
T Consensus 281 ~~--------~~~--------~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~ 340 (1045)
T 1k32_A 281 EI--------GDL--------ESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRY 340 (1045)
T ss_dssp CC--------CCC--------CBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB---EEECSCCSCEEE
T ss_pred cc--------Ccc--------cccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc---eEEccCCCcceE
Confidence 00 000 0000112356678999999 9999999888 8899999998877 344667777 89
Q ss_pred EEEEEccCCCEEEEEeCCCcEE-EEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCC
Q 000961 252 SCVMFHAKQDIIVSNSEDKSIR-VWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGD 330 (1208)
Q Consensus 252 ~~l~~sp~g~~l~sgs~dg~I~-vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~ 330 (1208)
.+++|+ +|+.|++++.++.+. +||+.++.... +..+...+..++|+|+|+.+++++.
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~-------------------- 398 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVAND-------------------- 398 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEET--------------------
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECC--------------------
Confidence 999999 999999999888888 99988776543 4466678999999999999998874
Q ss_pred EEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecC--------CCEEEEEEccCCCCC
Q 000961 331 SLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD--------GGSYELYVIPKDSIG 402 (1208)
Q Consensus 331 ~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~--------~g~v~l~~l~~~~~~ 402 (1208)
++.+++||+.+++...+... + ...+.+++|||||+++++++... ++.+.+|++....
T Consensus 399 ------~~~v~~~d~~tg~~~~~~~~----~---~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-- 463 (1045)
T 1k32_A 399 ------RFEIMTVDLETGKPTVIERS----R---EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-- 463 (1045)
T ss_dssp ------TSEEEEEETTTCCEEEEEEC----S---SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--
T ss_pred ------CCeEEEEECCCCceEEeccC----C---CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc--
Confidence 56788999998876554421 1 22778999999999987766522 3589999987643
Q ss_pred CCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC----------------------------------------
Q 000961 403 RGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK---------------------------------------- 442 (1208)
Q Consensus 403 ~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~---------------------------------------- 442 (1208)
...+..+...+..++|+|||+++++.+.++...+|+..
T Consensus 464 --~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 541 (1045)
T 1k32_A 464 --IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 541 (1045)
T ss_dssp --EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCC
T ss_pred --EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccccccc
Confidence 22455677778889999999999888876655555432
Q ss_pred --C--ceeeeecCC-cceEEEEEeCCccEEEE---------------eCCeEEEEEcCCCeEEEEEeCCCeeEEEECCCC
Q 000961 443 --N--EVVKKSILP-IAADAIFYAGTGNLLCR---------------AEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDM 502 (1208)
Q Consensus 443 --~--~~~~~l~~~-~~v~~i~~s~dg~~Las---------------~dg~v~lwdl~~~~~l~~~~~~~v~~v~ws~dg 502 (1208)
+ ..+..+..+ ..+..+.++|+|.++++ .+..+++||+.+++..... ..+..+.|||||
T Consensus 542 ~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--~~v~~~~~S~DG 619 (1045)
T 1k32_A 542 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--NNLTDLRLSADR 619 (1045)
T ss_dssp CTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE--EEEEEEEECTTS
T ss_pred ccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee--cCcceEEECCCC
Confidence 1 011222333 26789999999998874 1458899999988754333 468899999999
Q ss_pred CEEEEEeCCeEEEEecCc
Q 000961 503 ESVALLSKHAIIIASKKL 520 (1208)
Q Consensus 503 ~~la~~s~~~i~i~~~~~ 520 (1208)
++|++.+.+++.+|+...
T Consensus 620 ~~l~~~~~~~i~~~d~~~ 637 (1045)
T 1k32_A 620 KTVMVRKDDGKIYTFPLE 637 (1045)
T ss_dssp CEEEEEETTSCEEEEESS
T ss_pred CEEEEEcCCcEEEEeCcc
Confidence 999999988888877543
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=334.14 Aligned_cols=258 Identities=18% Similarity=0.307 Sum_probs=223.5
Q ss_pred CceEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECC--CCeEEEEecccccCEEEEEEEcC--CCEEEEEECCCeEE
Q 000961 1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYR--MGTLIDRFDEHDGPVRGVHFHKS--QPLFVSGGDDYKIK 76 (1208)
Q Consensus 1 ml~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~--~g~~i~~l~~h~~~V~~l~fsp~--~~~Lasgs~Dg~I~ 76 (1208)
|+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.++|++++|+|+ +++|++|+.||.|+
T Consensus 1 ~~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp -------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred CeeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 567899999999999999999999999999999999998 66788889999999999999988 99999999999999
Q ss_pred EEECCCCe--EEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCEEEEEEee-----
Q 000961 77 VWNYKMHR--CLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRIWNWQSR--TCISVLTGHNHYVMCASFHP----- 145 (1208)
Q Consensus 77 vWd~~~~~--~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~iwd~~s~--~~i~~l~~h~~~V~~l~~~p----- 145 (1208)
+||+.+++ .+..+.+|...|.+++|+|+ +..+++++.||+|++||+.++ .....+.+|...|.++.|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77888899999999999999 999999999999999999877 34556778999999999999
Q ss_pred --------CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC--
Q 000961 146 --------KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-- 215 (1208)
Q Consensus 146 --------~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-- 215 (1208)
+++++++|+.||+|++||+++.... ......+.+|...|++++|+|+
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-----------------------~~~~~~~~~h~~~V~~l~~sp~~~ 217 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----------------------YVLESTLEGHSDWVRDVAWSPTVL 217 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTE-----------------------EEEEEEECCCSSCEEEEEECCCCS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCccc-----------------------ceeeeeecCCCCcEEEEEeccCCC
Confidence 5899999999999999999764321 1234467889999999999999
Q ss_pred -CCEEEEEeCCCcEEEEECCCCcee---EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 216 -LPLIVSGADDRQVKLWRMNETKAW---EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 216 -g~~L~sgs~dg~I~iwd~~~~~~~---~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
+++|++|+.||.|++||+.++... .......|...|++++|+|+++++++++.||.|++|++.++.
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 899999999999999999886421 134445688999999999999999999999999999998543
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.2e-29 Score=286.61 Aligned_cols=267 Identities=16% Similarity=0.205 Sum_probs=225.9
Q ss_pred EEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC----eEEEEEccCCCCEEEEEEcC--CCCEEEEEECCCcEE
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH----RCLFTLLGHLDYIRTVQFHH--EYPWIVSASDDQTIR 118 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~----~~~~~l~~h~~~I~~v~fs~--d~~~l~s~s~Dg~I~ 118 (1208)
..+.+|.++|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++.+|++++.||+|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 345789999999999999999999999999999999876 57778889999999999999 689999999999999
Q ss_pred EEECCCC---------eEEEEEecCCCCEEEEEEeeC--CCEEEEEECCCeEEEEECCCCccccccCCCcceeecccccc
Q 000961 119 IWNWQSR---------TCISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 119 iwd~~s~---------~~i~~l~~h~~~V~~l~~~p~--~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
+||+.++ +.+..+.+|...|.+++|+|+ ++++++++.||.|++||+.+.+...........
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------- 156 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM-------- 156 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--------
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--------
Confidence 9999887 668888999999999999999 999999999999999999876543221100000
Q ss_pred ccccccceEEEEEeccCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCC----
Q 000961 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPT---LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQ---- 260 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~---g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g---- 260 (1208)
........+|...+.+++|+|+ +.++++++.++.+.+|+...++...+..+.+|...|++++|+|++
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 157 ------KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp ------ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred ------cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 0000122367889999999997 899999999999999988888766678888999999999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCC----------------------------------------------eeEEEeecCCCCEE
Q 000961 261 DIIVSNSEDKSIRVWDVTKR----------------------------------------------TGVQTFRREHDRFW 294 (1208)
Q Consensus 261 ~~l~sgs~dg~I~vwd~~~~----------------------------------------------~~~~~~~~~~~~i~ 294 (1208)
++|++++.||.|++||+.++ +.+..+..|...|+
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW 310 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence 89999999999999998865 56667778888999
Q ss_pred EEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcce
Q 000961 295 ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT 351 (1208)
Q Consensus 295 ~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~ 351 (1208)
+++|+|++++|++++. |+.|++|++.+++..
T Consensus 311 ~~~~s~~~~~l~s~~~--------------------------dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 311 SVSWNLTGTILSSAGD--------------------------DGKVRLWKATYSNEF 341 (351)
T ss_dssp EEEECSSSCCEEEEET--------------------------TSCEEEEEECTTSCE
T ss_pred EEEEcCCCCEEEEecC--------------------------CCcEEEEecCcCcch
Confidence 9999999999998884 667788888776543
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=303.79 Aligned_cols=298 Identities=16% Similarity=0.297 Sum_probs=228.0
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe-----------EEEEEccCC------------CCEEEEEEcCCC
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-----------CLFTLLGHL------------DYIRTVQFHHEY 105 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-----------~~~~l~~h~------------~~I~~v~fs~d~ 105 (1208)
.|.+.|++++|+|++++|++|+.||.|+|||+.+++ +...+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999999876 578889998 889999999998
Q ss_pred --CEEEEEECCCcEEEEECCCCeEE---------------------------------------EE-EecCCCCEEEEEE
Q 000961 106 --PWIVSASDDQTIRIWNWQSRTCI---------------------------------------SV-LTGHNHYVMCASF 143 (1208)
Q Consensus 106 --~~l~s~s~Dg~I~iwd~~s~~~i---------------------------------------~~-l~~h~~~V~~l~~ 143 (1208)
..|++++.|++|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764432 12 3679999999999
Q ss_pred eeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC-CEEEEE
Q 000961 144 HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL-PLIVSG 222 (1208)
Q Consensus 144 ~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~L~sg 222 (1208)
+|++++|++| .|++|++||+......... +.. . ...+.+|...|.+++|+|++ .+|++|
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~-----~~~--~------------~~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNI-----VDI--K------------PANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEE-----EEC--C------------CSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeee-----eec--c------------cccccccCcceEEEEECCCCCcEEEEE
Confidence 9999999998 7999999999742211000 000 0 00245789999999999998 999999
Q ss_pred eCCCcEEEEECCCCceeE--EEeecCcCC------------CeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEee
Q 000961 223 ADDRQVKLWRMNETKAWE--VDTLRGHMN------------NVSCVMFHAKQDIIVSNSEDKSIRVWDVTK-RTGVQTFR 287 (1208)
Q Consensus 223 s~dg~I~iwd~~~~~~~~--~~~l~~h~~------------~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~-~~~~~~~~ 287 (1208)
+.||.|++||+.+++... ...+..|.. .|.+++|+|++++|++++. +.|++||+.+ ++++..+.
T Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence 999999999999876311 355666665 8999999999999999999 9999999997 88887777
Q ss_pred cCCCC---------------EEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCccee
Q 000961 288 REHDR---------------FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQ 352 (1208)
Q Consensus 288 ~~~~~---------------i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~ 352 (1208)
.|... +..++|+|++++|++|+. |+.|++||+.+++...
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~--------------------------dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY--------------------------NNFFRMFDRNTKRDIT 378 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS--------------------------TTEEEEEETTTCCEEE
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEecc--------------------------CCEEEEEEcCCCccee
Confidence 66431 234899999999998884 5566666666655432
Q ss_pred eEeecCC---------------C----------CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEc
Q 000961 353 VIPIRRP---------------G----------STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVI 396 (1208)
Q Consensus 353 ~~~~~~~---------------~----------~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l 396 (1208)
+...... + ...+...+..++|+|+++.+++++. +.+.+|.-
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~---~~~~~~~~ 444 (447)
T 3dw8_B 379 LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT---NNLYIFQD 444 (447)
T ss_dssp EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS---SCEEEEEC
T ss_pred eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec---ceeeeecc
Confidence 1111000 0 0011337889999999998877654 44777753
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-29 Score=299.44 Aligned_cols=269 Identities=11% Similarity=0.110 Sum_probs=227.8
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe---EEEEecc-------------------------------------
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT---LIDRFDE------------------------------------- 49 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~---~i~~l~~------------------------------------- 49 (1208)
.++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999976665 68899999999998 6655543
Q ss_pred -----------------cccCEEEEEEEcCCCEE-EEEECCCeEEEEECC--CCeEEEEEc--cCCCCEEEEEEcCCCCE
Q 000961 50 -----------------HDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYK--MHRCLFTLL--GHLDYIRTVQFHHEYPW 107 (1208)
Q Consensus 50 -----------------h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~--~~~~~~~l~--~h~~~I~~v~fs~d~~~ 107 (1208)
|.+.|++++|+|++++| ++|+.||.|++||+. +++++..+. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33379999999999996 889999999999999 888888876 67789999999999999
Q ss_pred EEEEECCCcEEEEECCCCeEEE----EEecCCCCEEEEEEeeC---CCEEEEEECCCeEEEEECCCCccccccCCCccee
Q 000961 108 IVSASDDQTIRIWNWQSRTCIS----VLTGHNHYVMCASFHPK---EDLVVSASLDQTVRVWDIGALRKKTVSPADDILR 180 (1208)
Q Consensus 108 l~s~s~Dg~I~iwd~~s~~~i~----~l~~h~~~V~~l~~~p~---~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~ 180 (1208)
|++++.||.|++|++.+++... .+.+|...|.+++|+|+ +++|++++.|++|++||+.+.+..
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~---------- 233 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV---------- 233 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE----------
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee----------
Confidence 9999999999999998876544 77889999999999999 899999999999999999764422
Q ss_pred eccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec---------------
Q 000961 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR--------------- 245 (1208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~--------------- 245 (1208)
...+.+|...|.+++|+ ++++|++++.|+.|++||+.+++. +..+.
T Consensus 234 ----------------~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 234 ----------------DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN--LSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp ----------------EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE--EEEEECHHHHGGGCCTTSBC
T ss_pred ----------------eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE--eeeecchhhhhhhhhhcccc
Confidence 12355899999999999 999999999999999999999886 33333
Q ss_pred ----------CcCCCeEEEEEccCCCEEEEEe-CCCcEEEEeC--CCC---eeEEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 246 ----------GHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDV--TKR---TGVQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 246 ----------~h~~~V~~l~~sp~g~~l~sgs-~dg~I~vwd~--~~~---~~~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
.....|.+++|+|+++++++++ .++.|++|++ .++ ..+..+..+ ..+++++|+|++.++++++
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 2345799999999999999999 8999999999 555 667777776 8899999999654444433
No 108
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.6e-28 Score=292.77 Aligned_cols=255 Identities=16% Similarity=0.362 Sum_probs=218.9
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC-
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM- 82 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~- 82 (1208)
++.+|...|++|+|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.|+.+++||...
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 456788899999999999999999999999999999999999999999999998875 56999999999999999886
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe----EEEEEecCCCCEEEEEEeeCC-CEEEEE--EC
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT----CISVLTGHNHYVMCASFHPKE-DLVVSA--SL 155 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~----~i~~l~~h~~~V~~l~~~p~~-~~l~s~--s~ 155 (1208)
...+.++.+|...+..+.|+|++.++++++.|+.+++|+..+++ .+.....|...|.+++|+|.+ ..++++ +.
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 45667889999999999999999999999999999999998764 456778899999999999976 555554 47
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEC
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWRM 233 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs--~dg~I~iwd~ 233 (1208)
|++|++||+.+++... .+ .+...+.++.|+|+++.+++++ .|+.|++||+
T Consensus 300 D~~I~iwd~~t~~~~~---------------------------~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 300 DRHIRIWNVCSGACLS---------------------------AV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp TCEEEEEETTTTEEEE---------------------------EE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred CCEEEEEeCCccccce---------------------------ee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence 9999999998754321 22 3456789999999999998876 7899999999
Q ss_pred CCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCC
Q 000961 234 NETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290 (1208)
Q Consensus 234 ~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~ 290 (1208)
.+++. +..+.+|.+.|++++|+|+|++|++|+.|++|++||+....+......+.
T Consensus 352 ~~~~~--v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~ 406 (420)
T 4gga_A 352 PTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREK 406 (420)
T ss_dssp TTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-------
T ss_pred CCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhcc
Confidence 99887 88899999999999999999999999999999999998766655544443
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=9.7e-28 Score=273.30 Aligned_cols=280 Identities=15% Similarity=0.234 Sum_probs=224.1
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEc--cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL--GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~--~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l 131 (1208)
+++|+||+++ +|++|. |++|+|||+.+++++..+. +|...|++++|+|++++|++|+.||+|++||+.+++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5779999886 777665 8999999999999888764 67888999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE
Q 000961 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1208)
Q Consensus 132 ~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (1208)
.+|...+.++.+ ++..+++++.++.+++|+...... ....+.+|...+..+.
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~ 157 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH--------------------------HVATLSGHSQEVCGLR 157 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC--------------------------EEEEEECCSSCEEEEE
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCce--------------------------eEEEEcCccCceEEEE
Confidence 999998877655 567999999999999999876332 2346778999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcee--EEEeecCcCCCeEEEEEccCCCEE---EEEeCCCcEEEEeCCCCeeEEEe
Q 000961 212 FHPTLPLIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDII---VSNSEDKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 212 ~sp~g~~L~sgs~dg~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~~sp~g~~l---~sgs~dg~I~vwd~~~~~~~~~~ 286 (1208)
++++++++++++.||.|++||+.+++.. .......|.+.|.++.++|++..+ ++++.+++|++||..........
T Consensus 158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred EcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 9999999999999999999999876531 244566788899999999976533 35567788999987765443322
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCc
Q 000961 287 RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQ 366 (1208)
Q Consensus 287 ~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 366 (1208)
. +..
T Consensus 238 ~-~~~--------------------------------------------------------------------------- 241 (318)
T 4ggc_A 238 D-AHS--------------------------------------------------------------------------- 241 (318)
T ss_dssp E-CSS---------------------------------------------------------------------------
T ss_pred c-cee---------------------------------------------------------------------------
Confidence 1 222
Q ss_pred CCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecC
Q 000961 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLK 442 (1208)
Q Consensus 367 ~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~ 442 (1208)
.+..+.|+|+++.++++++..++.+++|++... .....+.+|.+.|++++|+|+++++++++.|++|+|||+.
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 445556666666666655555666777766542 2333567899999999999999999999999999999985
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.3e-28 Score=281.81 Aligned_cols=284 Identities=13% Similarity=0.116 Sum_probs=230.9
Q ss_pred EEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe---EEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEE
Q 000961 45 DRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR---CLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIW 120 (1208)
Q Consensus 45 ~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~---~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iw 120 (1208)
....+|.+.|++++|+|++++|++++.||.|++|++.+++ ....+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3345899999999999999999999999999999998776 3455668999999999999999 99999999999999
Q ss_pred EC-CCCeEEEEEec--CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEE
Q 000961 121 NW-QSRTCISVLTG--HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1208)
Q Consensus 121 d~-~s~~~i~~l~~--h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1208)
|+ .+++. ..+.+ |...|.+++|+| ++.+++++.|+.|++||+++....... . .....
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~-----------~~~~~ 144 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA-------V-----------KNLNS 144 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE-------E-----------EESCS
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc-------c-----------cCCee
Confidence 99 77755 67788 999999999999 999999999999999998641100000 0 00000
Q ss_pred EEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeecCcCCCeEEEEEcc-CCCEEEEEeCCCcEEEE
Q 000961 198 YVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTLRGHMNNVSCVMFHA-KQDIIVSNSEDKSIRVW 275 (1208)
Q Consensus 198 ~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~-~~~~~~~~l~~h~~~V~~l~~sp-~g~~l~sgs~dg~I~vw 275 (1208)
..+ .|...|.+++|+|++ +++++.|+.|++||+.+ ...........|...+.+++|+| +++++++++.||.|++|
T Consensus 145 ~~~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~ 221 (342)
T 1yfq_A 145 NNT-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221 (342)
T ss_dssp SSS-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred eEE-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEE
Confidence 012 277889999999987 99999999999999998 55322445667889999999999 99999999999999999
Q ss_pred eCCCC------eeEEEeecCCC---------CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeE
Q 000961 276 DVTKR------TGVQTFRREHD---------RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFL 340 (1208)
Q Consensus 276 d~~~~------~~~~~~~~~~~---------~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i 340 (1208)
++... +....+..+.. .+.+++|+|++++|++++. ++.|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--------------------------dg~i 275 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS--------------------------DGII 275 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET--------------------------TSCE
T ss_pred EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC--------------------------CceE
Confidence 99887 77788887755 8999999999999999884 6788
Q ss_pred EEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 341 RYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 341 ~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
++||+.+++.+.. +..+ |...|.+++ |+++++++++.
T Consensus 276 ~vwd~~~~~~~~~--~~~~----h~~~v~~~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 276 SCWNLQTRKKIKN--FAKF----NEDSVVKIA--CSDNILCLATS 312 (342)
T ss_dssp EEEETTTTEEEEE--CCCC----SSSEEEEEE--ECSSEEEEEEE
T ss_pred EEEcCccHhHhhh--hhcc----cCCCceEec--CCCCeEEEEec
Confidence 8999988776443 3322 022888888 99997766544
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=9.7e-28 Score=287.31 Aligned_cols=280 Identities=24% Similarity=0.453 Sum_probs=236.6
Q ss_pred cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 000961 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (1208)
Q Consensus 48 ~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~ 127 (1208)
.+|...|.++.| ++++|++|+.||.|++||+.+++++..+.+|...|.+++| ++++|++|+.||+|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 467778998877 7899999999999999999999999999999999999999 778999999999999999999999
Q ss_pred EEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCe
Q 000961 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1208)
Q Consensus 128 i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 207 (1208)
+..+.+|...|.++.|+ ++.+++|+.||.|++||+.+..... ....+.+|...|
T Consensus 206 ~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~------------------------~~~~~~~~~~~v 259 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDIT------------------------LRRVLVGHRAAV 259 (435)
T ss_dssp EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCE------------------------EEEEECCCSSCE
T ss_pred EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCce------------------------eeeEecCCCCcE
Confidence 99999999999999997 4699999999999999997744321 234677899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee
Q 000961 208 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287 (1208)
Q Consensus 208 ~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~ 287 (1208)
.+++| +++++++|+.||.|++||+.+++. +..+.+|...|.++.|+ ++++++|+.||.|++||+.+++.+..+.
T Consensus 260 ~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 260 NVVDF--DDKYIVSASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEe--CCCEEEEEeCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence 99999 678999999999999999999887 78888999999999994 6899999999999999999999999999
Q ss_pred cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcce-------eeEeecCCC
Q 000961 288 REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT-------QVIPIRRPG 360 (1208)
Q Consensus 288 ~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~ 360 (1208)
.|...+.++++ ++.++++|+. |+.|++||+.++... .+..+. +
T Consensus 334 ~h~~~v~~~~~--~~~~l~sg~~--------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~ 383 (435)
T 1p22_A 334 GHEELVRCIRF--DNKRIVSGAY--------------------------DGKIKVWDLVAALDPRAPAGTLCLRTLV--E 383 (435)
T ss_dssp CCSSCEEEEEC--CSSEEEEEET--------------------------TSCEEEEEHHHHTSTTSCTTTTEEEEEC--C
T ss_pred CCcCcEEEEEe--cCCEEEEEeC--------------------------CCcEEEEECCCCCCccccccchheeecc--C
Confidence 99999999988 6788888884 778889998765411 222333 2
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCC
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~ 400 (1208)
| ...|.+++| +++.++ +++.||.+++|++....
T Consensus 384 h---~~~v~~l~~--~~~~l~--s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 384 H---SGRVFRLQF--DEFQIV--SSSHDDTILIWDFLNDP 416 (435)
T ss_dssp C---SSCCCCEEE--CSSCEE--ECCSSSEEEEEC-----
T ss_pred C---CCCeEEEEe--CCCEEE--EEeCCCEEEEEECCCCC
Confidence 2 338999999 566553 35578999999998654
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=1.3e-28 Score=291.67 Aligned_cols=252 Identities=16% Similarity=0.274 Sum_probs=219.3
Q ss_pred eEeecCCCCEEEEEEeC-CCCEEEEEecCCeEEEEECCCC-------eEEEEecccccCEEEEEEEcCC-CEEEEEECCC
Q 000961 3 TKFETKSNRVKGLSFHS-KRPWILASLHSGVIQLWDYRMG-------TLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDY 73 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g-------~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg 73 (1208)
..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++ +.+..+.+|...|++++|+|++ .+|++++.||
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 45789999999999999 9999999999999999999988 5678888999999999999998 6999999999
Q ss_pred eEEEEECCCCeEEEEE--ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCC-EEEEEEeeCCCE
Q 000961 74 KIKVWNYKMHRCLFTL--LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHY-VMCASFHPKEDL 149 (1208)
Q Consensus 74 ~I~vWd~~~~~~~~~l--~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~~h~~~-V~~l~~~p~~~~ 149 (1208)
.|++||+.+++++..+ .+|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+|.+. +.++.|+|++.+
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI 234 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE
Confidence 9999999999999999 889999999999999999999999999999999999999998 788776 899999999999
Q ss_pred EEEE---ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEE-EeCC
Q 000961 150 VVSA---SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS-GADD 225 (1208)
Q Consensus 150 l~s~---s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~s-gs~d 225 (1208)
|++| +.|+.|++||+.+.+... ......|...+.+++|+|++++|++ |+.|
T Consensus 235 l~~g~~~~~d~~i~iwd~~~~~~~~-------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 235 LTTGFSRMSERQVALWDTKHLEEPL-------------------------SLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp EEEEECTTCCEEEEEEETTBCSSCS-------------------------EEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred EEEeccCCCCceEEEEcCccccCCc-------------------------eEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 9999 789999999998754311 1122356778999999999999875 5579
Q ss_pred CcEEEEECCCCce--eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 000961 226 RQVKLWRMNETKA--WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG 282 (1208)
Q Consensus 226 g~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~ 282 (1208)
|.|++|++.+++. ..+.... |...|.+++|+|++.++++ .++.+++|++.++..
T Consensus 290 g~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 9999999998773 2233333 6789999999999988775 466999999887654
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.8e-28 Score=293.12 Aligned_cols=251 Identities=22% Similarity=0.373 Sum_probs=220.3
Q ss_pred eEeecCCCCEEEEEEeCC-CCEEEEEecCCeEEEEECCC----------CeEEEEecccccCEEEEEEEcCCC-EEEEEE
Q 000961 3 TKFETKSNRVKGLSFHSK-RPWILASLHSGVIQLWDYRM----------GTLIDRFDEHDGPVRGVHFHKSQP-LFVSGG 70 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspd-g~~Lasg~~dg~I~iWd~~~----------g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs 70 (1208)
....+|.+.|++++|+|+ +.+|++++.+|.|++||+.+ .+.+..+.+|...|++++|+|+++ +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456789999999999997 67999999999999999987 677888899999999999999998 999999
Q ss_pred CCCeEEEEECCCCeE-------EEEEccCCCCEEEEEEcC-CCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCEE
Q 000961 71 DDYKIKVWNYKMHRC-------LFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSR---TCISVLTGHNHYVM 139 (1208)
Q Consensus 71 ~Dg~I~vWd~~~~~~-------~~~l~~h~~~I~~v~fs~-d~~~l~s~s~Dg~I~iwd~~s~---~~i~~l~~h~~~V~ 139 (1208)
.||.|++|++.++.. ...+.+|...|.+++|+| ++..|++++.||.|++||++++ +.+..+..|...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987322 456778999999999999 6779999999999999999977 57788889999999
Q ss_pred EEEEeeCCC-EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC-
Q 000961 140 CASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP- 217 (1208)
Q Consensus 140 ~l~~~p~~~-~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~- 217 (1208)
+++|+|++. ++++|+.||+|++||++..... ...+.+|...|.+++|+|+++
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~--------------------------~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLK--------------------------LHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSC--------------------------SEEEECCSSCEEEEEECSSCTT
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC--------------------------eEEeecCCCCEEEEEECCCCCC
Confidence 999999986 7899999999999999874321 225667999999999999985
Q ss_pred EEEEEeCCCcEEEEECCCCc------------eeEEEeecCcCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCC
Q 000961 218 LIVSGADDRQVKLWRMNETK------------AWEVDTLRGHMNNVSCVMFHAKQD-IIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 218 ~L~sgs~dg~I~iwd~~~~~------------~~~~~~l~~h~~~V~~l~~sp~g~-~l~sgs~dg~I~vwd~~~ 279 (1208)
+|++++.||.|++||+.... ...+....+|...|++++|+|+++ ++++++.||.|++|++..
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 79999999999999998721 122677789999999999999999 999999999999999864
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=276.68 Aligned_cols=287 Identities=15% Similarity=0.206 Sum_probs=234.5
Q ss_pred EEECCCCeEEEEecccccCEEEEEEEcC---CCEEEEEECCCeEEEEECCC-CeEE-EEEccCCCCEEEEEEcCCCCEEE
Q 000961 35 LWDYRMGTLIDRFDEHDGPVRGVHFHKS---QPLFVSGGDDYKIKVWNYKM-HRCL-FTLLGHLDYIRTVQFHHEYPWIV 109 (1208)
Q Consensus 35 iWd~~~g~~i~~l~~h~~~V~~l~fsp~---~~~Lasgs~Dg~I~vWd~~~-~~~~-~~l~~h~~~I~~v~fs~d~~~l~ 109 (1208)
.|+....+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 4556667788889999999999999999 59999999999999999997 5554 78889999999999999999999
Q ss_pred EEECCCcEEEEECCCCeEEEEEecCCCCEEEEEE--eeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeecccccc
Q 000961 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASF--HPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 110 s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~--~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
+++.||.|++||+.+++.+. +.+|...|.++.| +|++++|++++.||.|++||+++.+...
T Consensus 103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---------------- 165 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM---------------- 165 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE----------------
T ss_pred EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE----------------
Confidence 99999999999999998776 5569999999999 8888999999999999999998754322
Q ss_pred ccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCE----E
Q 000961 188 LFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDI----I 263 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~----l 263 (1208)
.+..+ ..+.++.+.+ +.+++++.++.+.+|++.............+...+.++.+.++... +
T Consensus 166 -----------~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 166 -----------VLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp -----------EEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred -----------EEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence 23333 3566666664 5789999999999999988765333333445566777777766554 9
Q ss_pred EEEeCCCcEEEEeCCCC---eeEEEeecCCC------------CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEec
Q 000961 264 VSNSEDKSIRVWDVTKR---TGVQTFRREHD------------RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVS 328 (1208)
Q Consensus 264 ~sgs~dg~I~vwd~~~~---~~~~~~~~~~~------------~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~ 328 (1208)
++++.||.|++||+... ..+..+..+.. .+.+++|+|++++|++++.
T Consensus 232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~------------------ 293 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS------------------ 293 (368)
T ss_dssp EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET------------------
T ss_pred EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc------------------
Confidence 99999999999999887 55667776665 6999999999999999984
Q ss_pred CCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 329 GDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 329 ~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
|+.|++||+.+++.+..+ . ++ ...+.+++|+|+++++++++.
T Consensus 294 --------dg~i~iwd~~~~~~~~~~--~--~~---~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 294 --------DGRFSFWDKDARTKLKTS--E--QL---DQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp --------TSCEEEEETTTTEEEEEC--C--CC---SSCEEEEEECTTSSCEEEEEC
T ss_pred --------CCeEEEEECCCCcEEEEe--c--CC---CCCceEEEECCCCCeEEEEec
Confidence 778999999987764433 2 22 338999999999998877665
No 115
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1.7e-28 Score=286.40 Aligned_cols=248 Identities=10% Similarity=0.140 Sum_probs=202.6
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEe-----------cCCeEEEEECCCCeE----EEEe-----cccccCEEEEEEEcCC
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASL-----------HSGVIQLWDYRMGTL----IDRF-----DEHDGPVRGVHFHKSQ 63 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~-----------~dg~I~iWd~~~g~~----i~~l-----~~h~~~V~~l~fsp~~ 63 (1208)
.|.+|...|.+++++ ++.+++|. .|+.+++|++.++.. .... ..++..+++++|||||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 467888899888765 55677664 467899999765422 1111 2355669999999999
Q ss_pred CEEEEEE--CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE--EecCCCCEE
Q 000961 64 PLFVSGG--DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV--LTGHNHYVM 139 (1208)
Q Consensus 64 ~~Lasgs--~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~--l~~h~~~V~ 139 (1208)
+++++++ .|++|+|||+.+++++..+. |...|.+++|+||++++++++.+ .+++|+..+++.+.. ..+|...|.
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEE
Confidence 9987654 68999999999999999886 77889999999999999999855 567777777766543 356888999
Q ss_pred EEEEeeCCCEEEEEECCC----eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 140 CASFHPKEDLVVSASLDQ----TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 140 ~l~~~p~~~~l~s~s~Dg----~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
+++|+|+++++++++.|+ .++.|++....... .....+.+|...|++++|+|+
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~-----------------------~~~~~~~~~~~~V~~~~~Spd 280 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV-----------------------LRSKQVTNRFKGITSMDVDMK 280 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE-----------------------EEEEEEESSCSCEEEEEECTT
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceecc-----------------------eeeeeecCCCCCeEeEEECCC
Confidence 999999999999999887 68889876533211 123467789999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEe-ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 216 LPLIVSGADDRQVKLWRMNETKAWEVDT-LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 216 g~~L~sgs~dg~I~iwd~~~~~~~~~~~-l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
|++|++|+.|+.|+|||+.+++. +.. +.+|...|++++|+|||++|+++|.|++|+|||+...
T Consensus 281 g~~lasgs~D~~V~iwd~~~~~~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 281 GELAVLASNDNSIALVKLKDLSM--SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEETTSCEEEEETTTTEE--EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCceEEEcCCCEEEEEECCCCcE--EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999886 655 5789999999999999999999999999999998643
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=8.7e-28 Score=279.32 Aligned_cols=252 Identities=10% Similarity=0.173 Sum_probs=193.6
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEE-EEEECCCeEEEEECC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYK 81 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~ 81 (1208)
..+.+|.+.|++++|||||++|++|+.+| ++|||..+++....... ..+..+++.++++.+ ++++.|++|++||..
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~ 89 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence 45688999999999999999999998665 78999988876655432 358889999998887 467788999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCEEEEEEeeCCCEEEE--EECCCe
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-TCISVLTGHNHYVMCASFHPKEDLVVS--ASLDQT 158 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-~~i~~l~~h~~~V~~l~~~p~~~~l~s--~s~Dg~ 158 (1208)
+++++..+. |...|.++.|+++. ++++ .|+.|++||+.++ +.+..+.. ....+++++ .++++ |+.||.
T Consensus 90 ~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~ 160 (355)
T 3vu4_A 90 KKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQ 160 (355)
T ss_dssp TTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTC
T ss_pred CCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcE
Confidence 999999887 67799999999874 4444 4789999999988 66655554 444566776 56666 578999
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceE-EEEEeccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCC
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV-KYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMNET 236 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~-I~iwd~~~~ 236 (1208)
|++||+.+.......... . ....... ...+.+|...|++++|+|+|++|++|+.||+ |++||+.++
T Consensus 161 v~iwd~~~~~~~~~~~~~-----------~-~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQG-----------V-QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEEECCC------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred EEEEECCCCCcccccccc-----------c-cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 999999875421100000 0 0000001 3467899999999999999999999999998 999999998
Q ss_pred ceeEEEeec-C-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 237 KAWEVDTLR-G-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 237 ~~~~~~~l~-~-h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
+. +..+. + |...|.+++|+|++++|++++.|++|++||+..+
T Consensus 229 ~~--~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 229 VL--VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp CE--EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred cE--EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 87 67776 5 9999999999999999999999999999999765
No 117
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=1.9e-26 Score=306.70 Aligned_cols=415 Identities=8% Similarity=0.005 Sum_probs=303.0
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC------CeEEEEECC
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD------YKIKVWNYK 81 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D------g~I~vWd~~ 81 (1208)
+.+.+.+.+||| ++|+.++. +.|.+|++.+++ ...+..|.+.|.+++|||||++|++++.+ ..|++|++.
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~ 88 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE 88 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCc-EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC
Confidence 467899999996 47887764 799999997776 45667899999999999999999988643 489999998
Q ss_pred CCeEEEEEccCCCCE-------EEEEEcCCCCEEEEEECC------CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCC
Q 000961 82 MHRCLFTLLGHLDYI-------RTVQFHHEYPWIVSASDD------QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I-------~~v~fs~d~~~l~s~s~D------g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~ 148 (1208)
+++ ...+..|...+ ..++|+|||+.+++++.+ ..|.+|++.+++...... +. ...+.|+| |
T Consensus 89 ~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~--~~~~~~sp-G- 162 (1045)
T 1k32_A 89 NGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-GP--ATHILFAD-G- 162 (1045)
T ss_dssp TTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-CS--CSEEEEET-T-
T ss_pred CCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecC-CC--cceeeeCC-C-
Confidence 876 56788898888 999999999977777654 358888887777543333 32 34577999 8
Q ss_pred EEEEEECCC------------eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC
Q 000961 149 LVVSASLDQ------------TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1208)
Q Consensus 149 ~l~s~s~Dg------------~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 216 (1208)
++++++.+. ..++|..... . ....+.+|...+.++.|+++
T Consensus 163 ~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~--------------------------~-~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 163 RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS--------------------------G-AFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp EEEEEESCSCCTTSTTCCSTTCCEEEEEEET--------------------------T-EEEEEECCSSCCEEEEEETT-
T ss_pred EEEEeccCCCccccccccCCCcCCEEEECCC--------------------------C-CeEECcCCCCcccceEEeCC-
Confidence 888876432 3344432110 1 11234789999999999998
Q ss_pred CEEEEEeCCCcEEEEECCC-CceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec-------
Q 000961 217 PLIVSGADDRQVKLWRMNE-TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR------- 288 (1208)
Q Consensus 217 ~~L~sgs~dg~I~iwd~~~-~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~------- 288 (1208)
.++++++.++.+.+|.+.. +.. ...+..|. .+...+|+|+|++|+++. ++.|++||+... .+..+..
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~--~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~ 289 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKD--LRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPE 289 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCS--CEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCC
T ss_pred EEEEEEeccCceEEEEEeCCCCc--ceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccc
Confidence 6677778889999998653 222 34444454 466779999999998875 889999998544 3434443
Q ss_pred ----CCCCEEEEEEe-CCCCEEEEEECCCeeeEeeCCCc--------------ceEEecCCEEEEE-eCCeEE-EEEccC
Q 000961 289 ----EHDRFWILASH-PEMNLLAAGHDSGMIVFKLERER--------------PAFAVSGDSLFYA-KDRFLR-YYEFST 347 (1208)
Q Consensus 289 ----~~~~i~~la~s-p~~~~la~g~~~gi~v~~l~~~~--------------~~~s~~~~~L~~~-~d~~i~-v~d~~~ 347 (1208)
+...+..++|+ |+|+.++++.++.+.+|+..... +.|+ +|+.++++ .+..+. +|+..+
T Consensus 290 ~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 290 DRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp SEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred cccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 22358899999 99999999887777777665432 2445 66778877 566777 889887
Q ss_pred CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEE
Q 000961 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFA 427 (1208)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l 427 (1208)
++...+ . ++ ...+..++|+|||+.+++.+ .++.+.+|++.... .......|.+.+.+++|+|||+++
T Consensus 369 ~~~~~l---~--~~---~~~~~~~~~SpDG~~la~~~--~~~~v~~~d~~tg~---~~~~~~~~~~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 369 GKAEKF---E--EN---LGNVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGK---PTVIERSREAMITDFTISDNSRFI 435 (1045)
T ss_dssp CCEEEC---C--CC---CCSEEEEEECTTSSEEEEEE--TTSEEEEEETTTCC---EEEEEECSSSCCCCEEECTTSCEE
T ss_pred CCceEe---c--CC---ccceeeeEECCCCCEEEEEC--CCCeEEEEECCCCc---eEEeccCCCCCccceEECCCCCeE
Confidence 654332 2 22 22789999999999887654 46799999997543 222334677788999999999998
Q ss_pred EEEcCCC----------EEEEEecCCceeeeecCCc-ceEEEEEeCCccEEEEe--CCeEEEEEc
Q 000961 428 VLDKSSN----------QVLVKNLKNEVVKKSILPI-AADAIFYAGTGNLLCRA--EDRVVIFDL 479 (1208)
Q Consensus 428 ~~~~~dg----------~I~Iwdl~~~~~~~l~~~~-~v~~i~~s~dg~~Las~--dg~v~lwdl 479 (1208)
++++.++ .|++||+.+.....+..+. .+..+.|+|||+.|++. ++...+|+.
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred EEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 8876543 8999999966666666655 78889999999988663 444455543
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3.6e-26 Score=269.07 Aligned_cols=274 Identities=11% Similarity=0.048 Sum_probs=223.6
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEE-EEEECCCeEEEEECCCCeEEEEEccCCCCEEEEE
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQ 100 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~ 100 (1208)
..+++++.++.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 357788889999999999999999987765 48999999999976 667789999999999999998887655 899999
Q ss_pred EcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEE-EEEECCCeEEEEECCCCccccccCCCcc
Q 000961 101 FHHEYPWIVSAS-DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV-VSASLDQTVRVWDIGALRKKTVSPADDI 178 (1208)
Q Consensus 101 fs~d~~~l~s~s-~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l-~s~s~Dg~V~vwdl~~~~~~~~~~~~~~ 178 (1208)
|+|++++|++++ .++.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.++.|++||+.+.+..
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-------- 151 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI-------- 151 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE--------
Confidence 999999886554 6799999999999998888755 468999999999877 67778999999999775432
Q ss_pred eeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEc
Q 000961 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI-VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257 (1208)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L-~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~s 257 (1208)
..+..+ ..+..++|+|+++.+ ++++.++.|++||+.+++. ...+. +...+.+++|+
T Consensus 152 -------------------~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~-~~~~~~~~~~~ 208 (391)
T 1l0q_A 152 -------------------NTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV--IDTVK-VEAAPSGIAVN 208 (391)
T ss_dssp -------------------EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE-CSSEEEEEEEC
T ss_pred -------------------EEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE--EEEEe-cCCCccceEEC
Confidence 123333 457899999999987 5677889999999998875 33333 45678999999
Q ss_pred cCCCEEEEEe---CCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEE
Q 000961 258 AKQDIIVSNS---EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFY 334 (1208)
Q Consensus 258 p~g~~l~sgs---~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~ 334 (1208)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++.++++..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~------------------------ 263 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALS------------------------ 263 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET------------------------
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcC------------------------
Confidence 9999999888 68999999999999888887654 5789999999987754432
Q ss_pred EeCCeEEEEEccCCcceeeEe
Q 000961 335 AKDRFLRYYEFSTQKDTQVIP 355 (1208)
Q Consensus 335 ~~d~~i~v~d~~~~~~~~~~~ 355 (1208)
.++.+++||+.+++....+.
T Consensus 264 -~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 264 -FXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp -TTTEEEEEETTTTEEEEEEE
T ss_pred -CCCEEEEEECCCCcEEEEEE
Confidence 35667777777766554443
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.8e-27 Score=284.43 Aligned_cols=275 Identities=19% Similarity=0.356 Sum_probs=227.6
Q ss_pred CEEEEEEeCCC----------CEEEEEec----CCeEEEEECC--------------------------CCeE-EEEecc
Q 000961 11 RVKGLSFHSKR----------PWILASLH----SGVIQLWDYR--------------------------MGTL-IDRFDE 49 (1208)
Q Consensus 11 ~V~~lafspdg----------~~Lasg~~----dg~I~iWd~~--------------------------~g~~-i~~l~~ 49 (1208)
+..++.|.|+. .++++|+. ...|.++++. +++. ......
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 45788898875 46788765 3467777542 1122 234457
Q ss_pred cccCEEEEEEEcC-CCEEEEEECCCeEEEEECCC----------CeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcE
Q 000961 50 HDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYKM----------HRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTI 117 (1208)
Q Consensus 50 h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~~----------~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I 117 (1208)
|.+.|++++|+|+ +.+|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|+++ +|++++.||+|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 9999999999997 67999999999999999986 678889999999999999999998 99999999999
Q ss_pred EEEECCCCeE-------EEEEecCCCCEEEEEEee-CCCEEEEEECCCeEEEEECCCCccccccCCCcceeecccccccc
Q 000961 118 RIWNWQSRTC-------ISVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189 (1208)
Q Consensus 118 ~iwd~~s~~~-------i~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1208)
++||+.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++||+++.....
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~------------------ 268 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK------------------ 268 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS------------------
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc------------------
Confidence 9999987322 456778999999999999 67899999999999999998743111
Q ss_pred ccccceEEEEEeccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCC-EEEEEe
Q 000961 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNS 267 (1208)
Q Consensus 190 ~~~~~~~~~~~~~h~~~V~~l~~sp~g~-~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~-~l~sgs 267 (1208)
....+..|...|++++|+|+++ ++++|+.||.|++||++.... .+..+..|...|++++|+|+++ +|++++
T Consensus 269 ------~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 269 ------PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSG 341 (430)
T ss_dssp ------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred ------ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence 1124568999999999999987 789999999999999998432 2677888999999999999985 799999
Q ss_pred CCCcEEEEeCCC--------------CeeEEEeecCCCCEEEEEEeCCCC-EEEEEEC
Q 000961 268 EDKSIRVWDVTK--------------RTGVQTFRREHDRFWILASHPEMN-LLAAGHD 310 (1208)
Q Consensus 268 ~dg~I~vwd~~~--------------~~~~~~~~~~~~~i~~la~sp~~~-~la~g~~ 310 (1208)
.||.|++||+.. ...+..+..|...+++++|+|++. ++++++.
T Consensus 342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC
Confidence 999999999986 356677778888999999999999 8888874
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.5e-26 Score=276.51 Aligned_cols=337 Identities=13% Similarity=0.127 Sum_probs=261.2
Q ss_pred CCCCEEEEE---EeCCCCEEEEEec--------------CC--eEEEEECCCC--eEEEEecccccCEEEEEEEcCCCEE
Q 000961 8 KSNRVKGLS---FHSKRPWILASLH--------------SG--VIQLWDYRMG--TLIDRFDEHDGPVRGVHFHKSQPLF 66 (1208)
Q Consensus 8 h~~~V~~la---fspdg~~Lasg~~--------------dg--~I~iWd~~~g--~~i~~l~~h~~~V~~l~fsp~~~~L 66 (1208)
+...+..++ |+|++..+++.+. ++ .|..||..++ +.+..+..+. .+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 345677888 8998887765432 22 4444454435 5666665554 45699999977788
Q ss_pred EEEECCCeEEEEECCCCeEEE-----EEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEE
Q 000961 67 VSGGDDYKIKVWNYKMHRCLF-----TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCA 141 (1208)
Q Consensus 67 asgs~Dg~I~vWd~~~~~~~~-----~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l 141 (1208)
++++.++.|++||+.+++... .+.+|...|.+++|++++..+++++.|+.|++||+.+++.+..+..|...+.++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 888889999999999998887 345789999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCEEEEEE-CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEE
Q 000961 142 SFHPKEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV 220 (1208)
Q Consensus 142 ~~~p~~~~l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~ 220 (1208)
+|+|+++.+++++ .|+.|++||+.+.+... .+. +...+.+++|+|+++.++
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~---------------------------~~~-~~~~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIR---------------------------KTD-KIGLPRGLLLSKDGKELY 269 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEE---------------------------ECC-CCSEEEEEEECTTSSEEE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEE---------------------------Eec-CCCCceEEEEcCCCCEEE
Confidence 9999999886555 79999999997654321 222 234588999999999999
Q ss_pred EEe--------CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeeEEEeecCCC
Q 000961 221 SGA--------DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDII-VSNSEDKSIRVWDVTKRTGVQTFRREHD 291 (1208)
Q Consensus 221 sgs--------~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l-~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 291 (1208)
+++ .||.|++||+.+++. .. ...|...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. +..
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~--~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~ 345 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKL--ID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFD 345 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEE--EE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSS
T ss_pred EEECCCCccccCCCeEEEEECCCCcE--Ee-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCC
Confidence 988 588999999998875 22 33456689999999999755 666899999999999998888776 567
Q ss_pred CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeE
Q 000961 292 RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRT 370 (1208)
Q Consensus 292 ~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~ 370 (1208)
.+.+++|+|++++++++..+.-.+ ....++.+ .|+.|++||..+++....+.. + . .+.+
T Consensus 346 ~~~~~~~s~dg~~l~~~~~~~~~~------------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~--~---~~~~ 405 (433)
T 3bws_A 346 KPNTIALSPDGKYLYVSCRGPNHP------------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---G--N---QPTG 405 (433)
T ss_dssp SEEEEEECTTSSEEEEEECCCCCT------------TTCTTSCCSSCCEEEEEETTTTEEEEEEEC---S--S---SEEE
T ss_pred CCCeEEEcCCCCEEEEEecCCCcc------------ccccccccccceEEEEEECCCCcEEEEecC---C--C---CCce
Confidence 799999999999888876532100 00111112 578999999998877655443 1 2 7899
Q ss_pred EEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 371 LSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 371 l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
++|+|+|+.+++++. .++.+++|++..
T Consensus 406 ~~~s~dg~~l~~~~~-~d~~i~v~~~~~ 432 (433)
T 3bws_A 406 LDVSPDNRYLVISDF-LDHQIRVYRRDG 432 (433)
T ss_dssp EEECTTSCEEEEEET-TTTEEEEEEETT
T ss_pred EEEcCCCCEEEEEEC-CCCeEEEEEecC
Confidence 999999998876543 578999999863
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-28 Score=314.56 Aligned_cols=242 Identities=23% Similarity=0.329 Sum_probs=208.9
Q ss_pred EEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC--CCeEEEEEccCCCCEEEEEEcCC--CCEEEEEECCCcEEE
Q 000961 44 IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK--MHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDDQTIRI 119 (1208)
Q Consensus 44 i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~--~~~~~~~l~~h~~~I~~v~fs~d--~~~l~s~s~Dg~I~i 119 (1208)
+..+.+|.++|++++|+|++++|++|+.||.|+|||+. +++.+.++.+|.+.|++++|+|+ +++|++++.||+|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34577999999999999999999999999999999998 56788889999999999999988 899999999999999
Q ss_pred EECCCCe--EEEEEecCCCCEEEEEEeeC--CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 120 WNWQSRT--CISVLTGHNHYVMCASFHPK--EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 120 wd~~s~~--~i~~l~~h~~~V~~l~~~p~--~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
||+.+++ .+..+.+|...|.+++|+|+ ++.+++|+.||+|++||+.+.....
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~------------------------ 137 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS------------------------ 137 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC------------------------
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc------------------------
Confidence 9999987 77788899999999999999 9999999999999999998753211
Q ss_pred EEEEEeccCCCeEEEEEcC-------------CCCEEEEEeCCCcEEEEECCCCce--eEEEeecCcCCCeEEEEEccC-
Q 000961 196 VKYVLEGHDRGVNWAAFHP-------------TLPLIVSGADDRQVKLWRMNETKA--WEVDTLRGHMNNVSCVMFHAK- 259 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp-------------~g~~L~sgs~dg~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~~sp~- 259 (1208)
...+.+|...|.+++|+| ++.++++|+.||.|++||+.++.. .....+.+|...|++++|+|+
T Consensus 138 -~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 138 -PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp -CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred -eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC
Confidence 225678999999999999 589999999999999999987642 235678899999999999999
Q ss_pred --CCEEEEEeCCCcEEEEeCCCCe-----eEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 260 --QDIIVSNSEDKSIRVWDVTKRT-----GVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 260 --g~~l~sgs~dg~I~vwd~~~~~-----~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
++++++++.||.|++||+.++. .......+...+++++|+|+++++++|+.
T Consensus 217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 8999999999999999998764 22233446778999999999999999874
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4.7e-28 Score=285.77 Aligned_cols=305 Identities=11% Similarity=0.097 Sum_probs=211.3
Q ss_pred CCEEEEEE---eCCCCEEEEEecCCeEEEEECCCC----------eEEEEecccccCEEEEEE-----------------
Q 000961 10 NRVKGLSF---HSKRPWILASLHSGVIQLWDYRMG----------TLIDRFDEHDGPVRGVHF----------------- 59 (1208)
Q Consensus 10 ~~V~~laf---spdg~~Lasg~~dg~I~iWd~~~g----------~~i~~l~~h~~~V~~l~f----------------- 59 (1208)
....++.| +|++..++++++++.|.+|+.... ..+..+ .|..++..+.|
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcce
Confidence 45667777 445555566667889999975321 111111 23444555444
Q ss_pred ---EcCCCEEEEEECCCeEEEEECCCCeEEE-----EEccCCCCEEEEEEcC--------CCCEEEEEECCCcEEEEECC
Q 000961 60 ---HKSQPLFVSGGDDYKIKVWNYKMHRCLF-----TLLGHLDYIRTVQFHH--------EYPWIVSASDDQTIRIWNWQ 123 (1208)
Q Consensus 60 ---sp~~~~Lasgs~Dg~I~vWd~~~~~~~~-----~l~~h~~~I~~v~fs~--------d~~~l~s~s~Dg~I~iwd~~ 123 (1208)
++++.+|++++.|++|++||..++.+.. .+.+|.+.|.+++|+| |+++|++++.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 3455689999999999999999886543 3578999999999998 78899999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEEeeCC-CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 124 SRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 124 s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
++.++..+.+|...|.+++|+|++ ++|++++.||+|++||+.+.+.............. .................+
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP--WLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC--CSEEEESGGGC------C
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc--eEEecccccceeeeeccc
Confidence 999888888899999999999987 58999999999999999876543221110000000 000000111112234567
Q ss_pred cCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEE------------------EEcc--CCC
Q 000961 203 HDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCV------------------MFHA--KQD 261 (1208)
Q Consensus 203 h~~~V~~l~~s-p~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l------------------~~sp--~g~ 261 (1208)
|...+.++.|+ |++..|++++.|+.+++||+..++. ...+..|...+..+ .|+| ++.
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND--YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY 330 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC--CceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence 88999999987 7999999999999999999987664 33444444333333 3333 344
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeC
Q 000961 262 IIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 262 ~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~ 319 (1208)
++++|+.||.|++||+.++........+...|++++|+|+|++||+++++|+++|++.
T Consensus 331 ~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 331 FATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 6778889999999999999998888889999999999999999999999999888764
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-26 Score=279.69 Aligned_cols=288 Identities=15% Similarity=0.163 Sum_probs=229.3
Q ss_pred ccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe---EEEEEcc------------------------------------
Q 000961 51 DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR---CLFTLLG------------------------------------ 91 (1208)
Q Consensus 51 ~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~---~~~~l~~------------------------------------ 91 (1208)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+.++..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4688999999999966665 56799999999988 6666553
Q ss_pred ------------------CCCCEEEEEEcCCCCEE-EEEECCCcEEEEECC--CCeEEEEEe--cCCCCEEEEEEeeCCC
Q 000961 92 ------------------HLDYIRTVQFHHEYPWI-VSASDDQTIRIWNWQ--SRTCISVLT--GHNHYVMCASFHPKED 148 (1208)
Q Consensus 92 ------------------h~~~I~~v~fs~d~~~l-~s~s~Dg~I~iwd~~--s~~~i~~l~--~h~~~V~~l~~~p~~~ 148 (1208)
|.+.|++++|+|++++| ++++.||+|++||+. +++++..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 33379999999999996 889999999999999 888888876 5678999999999999
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC---CCEEEEEeCC
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT---LPLIVSGADD 225 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---g~~L~sgs~d 225 (1208)
+|++++.+|.|++|++.+...... ....+.+|...|.+++|+|+ +++|++|+.|
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~-----------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 219 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKF-----------------------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD 219 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSC-----------------------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETT
T ss_pred EEEEEeCCCcEEEEecCCcccccc-----------------------cceeeecccCceEEEEEcCCCCCCcEEEEEcCC
Confidence 999999999999999977543210 01134578999999999999 9999999999
Q ss_pred CcEEEEECCCCceeEEEe-ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC---------------
Q 000961 226 RQVKLWRMNETKAWEVDT-LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE--------------- 289 (1208)
Q Consensus 226 g~I~iwd~~~~~~~~~~~-l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~--------------- 289 (1208)
+.|++||+.+++. +.. +.+|...|++++|+ ++++|++++.|+.|++||+.+++.+..+..+
T Consensus 220 ~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (450)
T 2vdu_B 220 EHIKISHYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP 296 (450)
T ss_dssp SCEEEEEESCTTC--EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--
T ss_pred CcEEEEECCCCce--eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc
Confidence 9999999998876 444 56899999999999 9999999999999999999999988887632
Q ss_pred ----------CCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEc--cCC-cceeeEee
Q 000961 290 ----------HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEF--STQ-KDTQVIPI 356 (1208)
Q Consensus 290 ----------~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~--~~~-~~~~~~~~ 356 (1208)
...+..++|+|+++++++++. .++.|++|++ .++ ....+..+
T Consensus 297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-------------------------~d~~i~iw~~~~~~~~~l~~~~~~ 351 (450)
T 2vdu_B 297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFVE-------------------------ATKCIIILEMSEKQKGDLALKQII 351 (450)
T ss_dssp --------CBCCCEEEEEECSSSSEEEEEET-------------------------TCSEEEEEEECSSSTTCEEEEEEE
T ss_pred cccccccccceEEEEEEEEeCCCCEEEEEEC-------------------------CCCeEEEEEeccCCCCceeeccEe
Confidence 345888999999999888873 3667888988 443 12223333
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEecC------CCEEEEEEccC
Q 000961 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVD------GGSYELYVIPK 398 (1208)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~~~------~g~v~l~~l~~ 398 (1208)
... . .+.+++|+|++ ++++.+.. +..+.+|.+..
T Consensus 352 ~~~---~---~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 352 TFP---Y---NVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ECS---S---CEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ccC---C---ceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEEc
Confidence 321 2 88999999953 33343322 34578887764
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.9e-28 Score=278.81 Aligned_cols=259 Identities=12% Similarity=0.096 Sum_probs=207.2
Q ss_pred EEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC---------CCeEE
Q 000961 16 SFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK---------MHRCL 86 (1208)
Q Consensus 16 afspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~---------~~~~~ 86 (1208)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344678899999999999999999999888886 677889999998 9999999999999665 55545
Q ss_pred EEEc-cCCCCEEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCEEEEEEeeCCCEEEEEECCCeEEEE
Q 000961 87 FTLL-GHLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVW 162 (1208)
Q Consensus 87 ~~l~-~h~~~I~~v~fs~--d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~-~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vw 162 (1208)
..+. +|.+.|.+++|+| +++++++++.||+|++||+.+++++.... .|...+.+++|+|++.+|++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 5543 6778999999999 99999999999999999999999877764 455689999999999999999999999999
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEec-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~ 241 (1208)
|+++.+... ..+.. |...|++++|+|++.+|++++ ++.|++||+++.+. +
T Consensus 198 d~~~~~~~~--------------------------~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~--~ 248 (343)
T 3lrv_A 198 NLSSPDQAS--------------------------SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG--T 248 (343)
T ss_dssp ESSCTTSCC--------------------------EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT--C
T ss_pred ECCCCCCCc--------------------------cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc--c
Confidence 998755321 13445 899999999999999999999 45999999998765 3
Q ss_pred Eeec---CcCCCeE--EEEEccCCCEEEEEeC-CCcEEEEeCCCCeeEEEeecCCCCEEEEEEeC---CCCEEEEEECCC
Q 000961 242 DTLR---GHMNNVS--CVMFHAKQDIIVSNSE-DKSIRVWDVTKRTGVQTFRREHDRFWILASHP---EMNLLAAGHDSG 312 (1208)
Q Consensus 242 ~~l~---~h~~~V~--~l~~sp~g~~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp---~~~~la~g~~~g 312 (1208)
..+. .|...+. +++|+|++++|++++. |+.|++|++.+....... ..+..++|++ +...+++++.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETT
T ss_pred eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCC
Confidence 3333 2334444 6999999999999998 999999998765433322 4566778888 777777776544
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.3e-26 Score=269.32 Aligned_cols=294 Identities=15% Similarity=0.181 Sum_probs=211.9
Q ss_pred EEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEE-EEEEC
Q 000961 35 LWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI-VSASD 113 (1208)
Q Consensus 35 iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l-~s~s~ 113 (1208)
||++.+.+.+..+..|..+|++++|+|+|++|++|+.++ ++|||..+++....... ..+..+.++++++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 577777888888889999999999999999999998775 78999998877665442 357888899988877 56777
Q ss_pred CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCC-ccccccCCCcceeeccccccccccc
Q 000961 114 DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGAL-RKKTVSPADDILRLSQMNTDLFGGV 192 (1208)
Q Consensus 114 Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1208)
|++|++||+.+++++..+. |...|.++.|+++. ++++. |+.|++||+.+. +....
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~-------------------- 135 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITD-------------------- 135 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSC--------------------
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEE--------------------
Confidence 8999999999999999887 66789999998753 44444 889999999875 32211
Q ss_pred cceEEEEEeccCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCce-------------eE-EEeecCcCCCeEEEEE
Q 000961 193 DAVVKYVLEGHDRGVNWAAFHPTLPLIVS--GADDRQVKLWRMNETKA-------------WE-VDTLRGHMNNVSCVMF 256 (1208)
Q Consensus 193 ~~~~~~~~~~h~~~V~~l~~sp~g~~L~s--gs~dg~I~iwd~~~~~~-------------~~-~~~l~~h~~~V~~l~~ 256 (1208)
+.. ....+++++ .++++ |+.+|.|++||+.++.. .+ +..+.+|...|++++|
T Consensus 136 -------~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~ 203 (355)
T 3vu4_A 136 -------DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL 203 (355)
T ss_dssp -------CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEE
T ss_pred -------ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE
Confidence 011 233456666 56666 57899999999987651 01 5678899999999999
Q ss_pred ccCCCEEEEEeCCCc-EEEEeCCCCeeEEEee-c-CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEE
Q 000961 257 HAKQDIIVSNSEDKS-IRVWDVTKRTGVQTFR-R-EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLF 333 (1208)
Q Consensus 257 sp~g~~l~sgs~dg~-I~vwd~~~~~~~~~~~-~-~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~ 333 (1208)
+|+|++|++++.||+ |++||+.+++.+.++. + |...|++++|+|++++|++++.
T Consensus 204 s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~----------------------- 260 (355)
T 3vu4_A 204 NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD----------------------- 260 (355)
T ss_dssp CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-----------------------
T ss_pred CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-----------------------
Confidence 999999999999998 9999999999999998 4 8899999999999999999985
Q ss_pred EEeCCeEEEEEccCCcceeeEe--------------------ecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEE
Q 000961 334 YAKDRFLRYYEFSTQKDTQVIP--------------------IRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYEL 393 (1208)
Q Consensus 334 ~~~d~~i~v~d~~~~~~~~~~~--------------------~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l 393 (1208)
|+.|++||+..+....... +.... ......++|+++++.+++.+ .+|.+++
T Consensus 261 ---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~d~~~l~~~~--~dg~~~~ 331 (355)
T 3vu4_A 261 ---KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK----HVRGCKIAWISESSLVVVWP--HTRMIET 331 (355)
T ss_dssp ---TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT----TCCCCEEEESSSSEEEEEET--TTTEEEE
T ss_pred ---CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC----CCCceEEEEeCCCCEEEEEe--CCCeEEE
Confidence 4455566655432111111 11100 11447799999999776643 5789999
Q ss_pred EEccCC
Q 000961 394 YVIPKD 399 (1208)
Q Consensus 394 ~~l~~~ 399 (1208)
|++...
T Consensus 332 ~~~~~~ 337 (355)
T 3vu4_A 332 FKVVFD 337 (355)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 998753
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.7e-26 Score=275.94 Aligned_cols=271 Identities=12% Similarity=0.109 Sum_probs=229.7
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEE-----EecccccCEEEEEEEcCCCEEEEEECCCeEEEEE
Q 000961 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLID-----RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~-----~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd 79 (1208)
+..+ ..+.+++|+|++.++++++.++.|++||..+++.+. .+.+|.+.|.+++|+|++.++++++.|+.|++||
T Consensus 119 ~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 119 FKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFD 197 (433)
T ss_dssp EECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred EcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence 3333 456699999977777787788999999999998887 4457899999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE----
Q 000961 80 YKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS---- 154 (1208)
Q Consensus 80 ~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s-~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s---- 154 (1208)
+.+++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 198 LKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp TTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESC
T ss_pred CCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCC
Confidence 999999999999999999999999999886555 7999999999999998888754 4599999999999999988
Q ss_pred ----CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEE-EEEeCCCcEE
Q 000961 155 ----LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI-VSGADDRQVK 229 (1208)
Q Consensus 155 ----~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L-~sgs~dg~I~ 229 (1208)
.||.|++||+.+.+.. ....|...+.+++|+|+++.+ ++++.++.|+
T Consensus 277 ~~~~~dg~i~~~d~~~~~~~----------------------------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEKLI----------------------------DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp TTCSCCEEEEEEETTTTEEE----------------------------EEEEEEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred ccccCCCeEEEEECCCCcEE----------------------------eeccCCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 5889999999864322 122345578899999999755 6668899999
Q ss_pred EEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeC---------------CCcEEEEeCCCCeeEEEeecCCCCEE
Q 000961 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE---------------DKSIRVWDVTKRTGVQTFRREHDRFW 294 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~---------------dg~I~vwd~~~~~~~~~~~~~~~~i~ 294 (1208)
+||+.+++. ...+. +...+.+++|+|+++++++++. ||.|++||..+++.+..+.. ...+.
T Consensus 329 v~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~ 404 (433)
T 3bws_A 329 VYDLKEKKV--QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPT 404 (433)
T ss_dssp EEETTTTEE--EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEE
T ss_pred EEECCCCcE--EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCc
Confidence 999998875 44443 6778999999999999988876 57999999999999888875 55789
Q ss_pred EEEEeCCCCEEEEEE
Q 000961 295 ILASHPEMNLLAAGH 309 (1208)
Q Consensus 295 ~la~sp~~~~la~g~ 309 (1208)
.++|+|+++++++++
T Consensus 405 ~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 405 GLDVSPDNRYLVISD 419 (433)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred eEEEcCCCCEEEEEE
Confidence 999999999988775
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=9.1e-25 Score=257.05 Aligned_cols=326 Identities=13% Similarity=0.085 Sum_probs=245.3
Q ss_pred eEeecCCCCEEEEEEeCCCCEE-EEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEE-CCCeEEEEEC
Q 000961 3 TKFETKSNRVKGLSFHSKRPWI-LASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVWNY 80 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~L-asg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~vWd~ 80 (1208)
..+.+|. .+.+++|+|++++| ++++.++.|++||..+++.+..+..|. .+.+++|+|++++|++++ .++.|++||+
T Consensus 26 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~ 103 (391)
T 1l0q_A 26 ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (391)
T ss_dssp EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC
Confidence 4556664 58999999999987 566689999999999999999887655 899999999999876554 6799999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEE-EEEECCCe
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWI-VSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV-VSASLDQT 158 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l-~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l-~s~s~Dg~ 158 (1208)
.+++.+..+..| ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.++.
T Consensus 104 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~ 181 (391)
T 1l0q_A 104 TSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMS 181 (391)
T ss_dssp TTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCE
Confidence 999998888754 568999999999977 67788999999999999999888866 457999999999887 56778899
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCC
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA---DDRQVKLWRMNE 235 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs---~dg~I~iwd~~~ 235 (1208)
|++||+.+.+.. ....+...+.+++|+|+++++++++ .++.|++||+.+
T Consensus 182 v~~~d~~~~~~~----------------------------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 182 ISVIDTVTNSVI----------------------------DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp EEEEETTTTEEE----------------------------EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred EEEEECCCCeEE----------------------------EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 999999875422 1123456789999999999999888 689999999998
Q ss_pred CceeEEEeecCcCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeeEEEeecCCCCEE---EEEEeCCCCEEEEEECC
Q 000961 236 TKAWEVDTLRGHMNNVSCVMFHAKQDII-VSNSEDKSIRVWDVTKRTGVQTFRREHDRFW---ILASHPEMNLLAAGHDS 311 (1208)
Q Consensus 236 ~~~~~~~~l~~h~~~V~~l~~sp~g~~l-~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~---~la~sp~~~~la~g~~~ 311 (1208)
++. +..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+..+.. .+.+.|++..+...
T Consensus 234 ~~~--~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--- 307 (391)
T 1l0q_A 234 NKI--TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSA--- 307 (391)
T ss_dssp TEE--EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBC---
T ss_pred CeE--EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccc---
Confidence 876 55666554 57899999999987 5678899999999999999988876654422 14444444322110
Q ss_pred CeeeEeeCCCcceEEecC-CEEEEE--eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEE
Q 000961 312 GMIVFKLERERPAFAVSG-DSLFYA--KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLIC 383 (1208)
Q Consensus 312 gi~v~~l~~~~~~~s~~~-~~L~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~ 383 (1208)
-|...... .+.+.. ...+.. .+...++|++..+.... . ......|+|+|.+.+..
T Consensus 308 ---~fs~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~----------~---~~~~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 308 ---DFKSNITS-GYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK----------K---QNPTHTYSETGIYTVRL 365 (391)
T ss_dssp ---CEEESCCS-SEEETTCCEEEEECCBSCSEEEEECSSSCEEC----------S---SSCEECCSSCEEEEEEE
T ss_pred ---cccccccc-ccccccceEEEEeCCCCceEEEEECCCCcccC----------c---CCCeEEeCCCceEEEEE
Confidence 11111111 111111 122222 67889999998775421 1 22346789999876543
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.4e-26 Score=273.07 Aligned_cols=256 Identities=12% Similarity=0.108 Sum_probs=183.5
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE-----EEecccccCEEEEEEEc--------CCCEEEEEECCCeEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-----DRFDEHDGPVRGVHFHK--------SQPLFVSGGDDYKIK 76 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i-----~~l~~h~~~V~~l~fsp--------~~~~Lasgs~Dg~I~ 76 (1208)
..+....+++++.+|++++.|++|+|||..++... ..+.+|.+.|++++|+| ++++||+|+.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 33334444556678999999999999999888653 34679999999999998 788999999999999
Q ss_pred EEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEE-------------------------
Q 000961 77 VWNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQSRTCISV------------------------- 130 (1208)
Q Consensus 77 vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s~~~i~~------------------------- 130 (1208)
|||+.++.++..+.+|...|.+++|+|++. +|++++.|++|++||+.+++....
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 999999998888889999999999999875 799999999999999988754332
Q ss_pred EecCCCCEEEEEEe-eCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEE
Q 000961 131 LTGHNHYVMCASFH-PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1208)
Q Consensus 131 l~~h~~~V~~l~~~-p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 209 (1208)
..+|...+.++.|+ |++..|++++.|+++++||+...+.......... .. ....+ ..+ ......+...+ .
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~~---~~~~~-~~~---~~~~~~~~~~~-~ 320 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-KL---GPKNL-LPN---VQGISLFPSLL-G 320 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CC-SCS---EEEECSSCCSS-C
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-cc---ccEEE-ccc---cccccccCcce-e
Confidence 23577888999997 7899999999999999999976543322111000 00 00000 000 01122222233 3
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000961 210 AAFHP--TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 210 l~~sp--~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
..|+| ++.++++|+.||.|++||..+++. .....+|..+|.+++|+|+|++|++++.+| +.+|.+
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 34444 344667788899999999999886 566778889999999999999999999877 655554
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.7e-24 Score=265.11 Aligned_cols=329 Identities=12% Similarity=0.102 Sum_probs=258.2
Q ss_pred EEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC--CCCeEEEEEccCC
Q 000961 16 SFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY--KMHRCLFTLLGHL 93 (1208)
Q Consensus 16 afspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~--~~~~~~~~l~~h~ 93 (1208)
+|+|++.++++++.+++|.+||..+++++.++..+.. +.+++|+|+|++|++++.|++|.+||+ .+++++.++. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4899999999999999999999999999999974433 899999999999999999999999999 8899998887 45
Q ss_pred CCEEEEEEcC----CCCEEEEEEC-CCcEEEEECCCCeEEEEEecC-----------CCCEEEEEEeeCCC-EEEEEECC
Q 000961 94 DYIRTVQFHH----EYPWIVSASD-DQTIRIWNWQSRTCISVLTGH-----------NHYVMCASFHPKED-LVVSASLD 156 (1208)
Q Consensus 94 ~~I~~v~fs~----d~~~l~s~s~-Dg~I~iwd~~s~~~i~~l~~h-----------~~~V~~l~~~p~~~-~l~s~s~D 156 (1208)
..++.++|+| +++++++++. +++|.+||..+++++.++..+ ...+.++.++|++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 5689999999 9999999884 899999999999999888642 23789999999775 55666778
Q ss_pred CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 000961 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNE 235 (1208)
Q Consensus 157 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~ 235 (1208)
++|.+||+.+.+... .....+...+..++|+|+|+++++++ .+++|.+||..+
T Consensus 302 g~i~vvd~~~~~~l~--------------------------~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t 355 (543)
T 1nir_A 302 GKVLLVNYKDIDNLT--------------------------VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD 355 (543)
T ss_dssp TEEEEEECTTSSSCE--------------------------EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred CeEEEEEecCCCcce--------------------------eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence 999999997743211 01123456677899999999877655 589999999999
Q ss_pred CceeEEEeecC----cCCCeEEEEEccC-CCEEEEEe-CCCcEEEEeCCC-------CeeEEEeecCCCCEEEEEEeCCC
Q 000961 236 TKAWEVDTLRG----HMNNVSCVMFHAK-QDIIVSNS-EDKSIRVWDVTK-------RTGVQTFRREHDRFWILASHPEM 302 (1208)
Q Consensus 236 ~~~~~~~~l~~----h~~~V~~l~~sp~-g~~l~sgs-~dg~I~vwd~~~-------~~~~~~~~~~~~~i~~la~sp~~ 302 (1208)
++. +..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+ ++.++++..+...+..+++||++
T Consensus 356 g~l--~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg 432 (543)
T 1nir_A 356 RRL--SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS 432 (543)
T ss_dssp TEE--EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred CeE--EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC
Confidence 986 444442 55444443 5777 66666665 579999999998 89999999988888999999999
Q ss_pred CEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcce-eeEee------cCCCCCCCCcCCeEEEEcC
Q 000961 303 NLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT-QVIPI------RRPGSTSLNQSPRTLSYSP 375 (1208)
Q Consensus 303 ~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~-~~~~~------~~~~~~~~~~~i~~l~~sp 375 (1208)
+.|.+++.-+- ... .+++|.+||+.+++.. ..+.+ ...+ . .+..+.|+|
T Consensus 433 ~~l~v~~~~~~-------~~~------------~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~--~---~~~~~~~~~ 488 (543)
T 1nir_A 433 SHLYVDTTFNP-------DAR------------ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA--K---RVVQPEYNK 488 (543)
T ss_dssp CEEEECCTTCS-------SHH------------HHTCEEEEETTCTTSCCEEECHHHHHCCCSSC--C---EEEEEEECS
T ss_pred CcEEEecCCCC-------Ccc------------cCceEEEEECCCCCCCeEEeechhhcccCCCC--C---ceEeccCCC
Confidence 99998762110 000 1568899999987765 33332 1212 2 788999999
Q ss_pred CCCEEEEEEe---cCCCEEEEEEccCC
Q 000961 376 TENAVLICSD---VDGGSYELYVIPKD 399 (1208)
Q Consensus 376 dg~~llv~~~---~~~g~v~l~~l~~~ 399 (1208)
+|+.++++.. +.++.|.+|+..+.
T Consensus 489 ~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp SSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 9999988754 35789999997764
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=4.9e-25 Score=244.95 Aligned_cols=238 Identities=12% Similarity=0.127 Sum_probs=179.2
Q ss_pred EEEEEEeCCCC---EEEEEecCCeEEEEECCCC---eEEEEecccccC-------------------------EEEEEEE
Q 000961 12 VKGLSFHSKRP---WILASLHSGVIQLWDYRMG---TLIDRFDEHDGP-------------------------VRGVHFH 60 (1208)
Q Consensus 12 V~~lafspdg~---~Lasg~~dg~I~iWd~~~g---~~i~~l~~h~~~-------------------------V~~l~fs 60 (1208)
|.++-|-.-|- .+++++ ...|++|+..++ +.++++..|..+ |+.++|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 55666655433 566665 678999999999 888888887754 5667777
Q ss_pred cC----CCEEEEEEC--------------------CCeEEEEEC-CCCeEEEEEccCCCCEEEEEEcC---CCCEEEEEE
Q 000961 61 KS----QPLFVSGGD--------------------DYKIKVWNY-KMHRCLFTLLGHLDYIRTVQFHH---EYPWIVSAS 112 (1208)
Q Consensus 61 p~----~~~Lasgs~--------------------Dg~I~vWd~-~~~~~~~~l~~h~~~I~~v~fs~---d~~~l~s~s 112 (1208)
|+ ++++++++. |+.|++|++ .+++.+.++.+|...++.++|++ ++..|++++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 88 778887664 778888888 44777777778888888888888 678999999
Q ss_pred CCCcEEEEECCCCeEEEEEecCC---CCEEEEEEeeCCCEE------------EEEECCCeEEEEECCCCccccccCCCc
Q 000961 113 DDQTIRIWNWQSRTCISVLTGHN---HYVMCASFHPKEDLV------------VSASLDQTVRVWDIGALRKKTVSPADD 177 (1208)
Q Consensus 113 ~Dg~I~iwd~~s~~~i~~l~~h~---~~V~~l~~~p~~~~l------------~s~s~Dg~V~vwdl~~~~~~~~~~~~~ 177 (1208)
.|++|+|||+.+++++.++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+.+.....
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~---- 276 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM---- 276 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE----
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE----
Confidence 99999999999999999998754 367788999999876 56888999999999875532110
Q ss_pred ceeeccccccccccccceEEEE-EeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeE-EEE
Q 000961 178 ILRLSQMNTDLFGGVDAVVKYV-LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVS-CVM 255 (1208)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~-~l~ 255 (1208)
... ..+|...+.+..++ +.++++|+.|++|+|||+.+++. +.++.+|...+. +++
T Consensus 277 -------------------~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 277 -------------------LYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFVK 333 (356)
T ss_dssp -------------------EECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCEEE
T ss_pred -------------------EeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEEE
Confidence 000 13555555444444 78999999999999999999997 788999987655 689
Q ss_pred EccCCCEEEEEeCCCcEEEEeC
Q 000961 256 FHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 256 ~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
|+|+|++|++|+.|++|+|||+
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999985
No 131
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-25 Score=258.98 Aligned_cols=229 Identities=10% Similarity=0.094 Sum_probs=183.7
Q ss_pred EEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC---------CCeEE
Q 000961 58 HFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ---------SRTCI 128 (1208)
Q Consensus 58 ~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~---------s~~~i 128 (1208)
.+.+++.+|++|+.||+|++||+.+++.+.++. ...|.++.|+|+ +++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344678899999999999999999999888876 467888889988 9999999999999665 55545
Q ss_pred EEEe-cCCCCEEEEEEee--CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC
Q 000961 129 SVLT-GHNHYVMCASFHP--KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR 205 (1208)
Q Consensus 129 ~~l~-~h~~~V~~l~~~p--~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 205 (1208)
.... +|...|.+++|+| +++++++++.||+|++||+.+.+... .....|..
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--------------------------~~~~~~~~ 171 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI--------------------------VHSAKSDV 171 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE--------------------------EECCCSSC
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE--------------------------EEecCCCC
Confidence 5554 6778999999999 99999999999999999998754321 12234566
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EeecC-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 000961 206 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV-DTLRG-HMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGV 283 (1208)
Q Consensus 206 ~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~-~~l~~-h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~ 283 (1208)
.+.+++|+|++.+|++|+.||.|++||+++++. . ..+.. |...|++++|+|++.+|++++ ++.|++||+++++.+
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ--ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTTS--CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC--CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence 799999999999999999999999999999886 4 56677 999999999999999999999 559999999988766
Q ss_pred EEeec---CCCCE--EEEEEeCCCCEEEEEE--CCCeeeEeeCC
Q 000961 284 QTFRR---EHDRF--WILASHPEMNLLAAGH--DSGMIVFKLER 320 (1208)
Q Consensus 284 ~~~~~---~~~~i--~~la~sp~~~~la~g~--~~gi~v~~l~~ 320 (1208)
..+.. +...+ .+++|+|+++++++++ ++.+.+|++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 54442 22233 4699999999999976 44455555543
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2.3e-24 Score=255.88 Aligned_cols=304 Identities=11% Similarity=0.084 Sum_probs=235.8
Q ss_pred CCCEEEEEEeCCCC-EEEEEe----cCC----eEEEEEC--CCCeEE--EEecccccCEEEEEEEc--------------
Q 000961 9 SNRVKGLSFHSKRP-WILASL----HSG----VIQLWDY--RMGTLI--DRFDEHDGPVRGVHFHK-------------- 61 (1208)
Q Consensus 9 ~~~V~~lafspdg~-~Lasg~----~dg----~I~iWd~--~~g~~i--~~l~~h~~~V~~l~fsp-------------- 61 (1208)
...|...+|++.|. .+++|+ .+| .|+|||+ .+++.+ ..+.+|...++.+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34677788888775 555765 467 8999999 899877 45888998888888875
Q ss_pred CCCEEEEEECC------CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC---cEEEEECCCCeEEEEEe
Q 000961 62 SQPLFVSGGDD------YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ---TIRIWNWQSRTCISVLT 132 (1208)
Q Consensus 62 ~~~~Lasgs~D------g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg---~I~iwd~~s~~~i~~l~ 132 (1208)
.+..++.++.+ +.|++||+. +.....+.+|...+.+++|+|++++|++++.++ .|++||+.+++.. .+.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~ 219 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA 219 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence 15666666654 799999997 455677888999999999999999999999885 9999999998875 566
Q ss_pred cCCCCEEEEEEeeCCCEEE-EEECCCe--EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEE
Q 000961 133 GHNHYVMCASFHPKEDLVV-SASLDQT--VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1208)
Q Consensus 133 ~h~~~V~~l~~~p~~~~l~-s~s~Dg~--V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 209 (1208)
.|...+.+++|+|+|+.|+ +++.++. |++||+.+.+.. .+..|...+.+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~----------------------------~l~~~~~~~~~ 271 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----------------------------QVTDGRSNNTE 271 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----------------------------ECCCCSSCEEE
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE----------------------------eCcCCCCcccc
Confidence 7888999999999999887 5665554 999998764421 44567788999
Q ss_pred EEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeE
Q 000961 210 AAFHPTLPLIVSGAD-DR--QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED---KSIRVWDVTKRTGV 283 (1208)
Q Consensus 210 l~~sp~g~~L~sgs~-dg--~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d---g~I~vwd~~~~~~~ 283 (1208)
++|+|+|++|++++. ++ .|.+||+.+++ ...+..+...+.+++|+|+|++|++++.+ +.|++||+.+++..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCC---EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 999999999998886 44 67888988876 34455677789999999999999988764 58999999988764
Q ss_pred EEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCC
Q 000961 284 QTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTS 363 (1208)
Q Consensus 284 ~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 363 (1208)
.+..+. .+.+++|+|+|+.|++++.++ ....|.+||+.++.... +.. +
T Consensus 349 -~l~~~~-~~~~~~~spdg~~l~~~s~~~-----------------------~~~~l~~~d~~g~~~~~---l~~--~-- 396 (415)
T 2hqs_A 349 -VLSSTF-LDETPSLAPNGTMVIYSSSQG-----------------------MGSVLNLVSTDGRFKAR---LPA--T-- 396 (415)
T ss_dssp -ECCCSS-SCEEEEECTTSSEEEEEEEET-----------------------TEEEEEEEETTSCCEEE---CCC--S--
T ss_pred -EecCCC-CcCCeEEcCCCCEEEEEEcCC-----------------------CccEEEEEECCCCcEEE---eeC--C--
Confidence 444443 789999999999888776422 01267889987554322 222 1
Q ss_pred CCcCCeEEEEcCCCC
Q 000961 364 LNQSPRTLSYSPTEN 378 (1208)
Q Consensus 364 ~~~~i~~l~~spdg~ 378 (1208)
...+.+++|+|...
T Consensus 397 -~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 397 -DGQVKFPAWSPYLH 410 (415)
T ss_dssp -SSEEEEEEECCCCC
T ss_pred -CCCCcCCccccccc
Confidence 33899999999654
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.2e-22 Score=248.88 Aligned_cols=343 Identities=11% Similarity=0.082 Sum_probs=252.6
Q ss_pred EEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEEC--CCCeEEEEEecCC
Q 000961 58 HFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNW--QSRTCISVLTGHN 135 (1208)
Q Consensus 58 ~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~--~s~~~i~~l~~h~ 135 (1208)
.|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.|++|++||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4889999999999999999999999999999984333 899999999999999999999999999 8999998888 45
Q ss_pred CCEEEEEEee----CCCEEEEEE-CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc-CCCeEE
Q 000961 136 HYVMCASFHP----KEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNW 209 (1208)
Q Consensus 136 ~~V~~l~~~p----~~~~l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~ 209 (1208)
..+..++|+| +|+++++++ .+++|.+||..+++.....+.. .... + ....| ...+..
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~--------g~~~----~-----~~~~~~~~~v~~ 284 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR--------GMTV----D-----TQTYHPEPRVAA 284 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC--------EECS----S-----SCCEESCCCEEE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc--------Cccc----C-----ccccccCCceEE
Confidence 5689999999 999999988 4899999999876543321100 0000 0 00012 237889
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeEEEee
Q 000961 210 AAFHPTLPL-IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVTKRTGVQTFR 287 (1208)
Q Consensus 210 l~~sp~g~~-L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs-~dg~I~vwd~~~~~~~~~~~ 287 (1208)
+.++|+++. +++...++.|.+||..+.+...+..+ .+...+.++.|+|+|+++++++ .+++|.+||..+++++.++.
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 999997765 55666789999999988765333344 3566788999999999876654 58899999999999988877
Q ss_pred c----CCCCEEEEEEeCC-CCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccC-------CcceeeEe
Q 000961 288 R----EHDRFWILASHPE-MNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST-------QKDTQVIP 355 (1208)
Q Consensus 288 ~----~~~~i~~la~sp~-~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~-------~~~~~~~~ 355 (1208)
. |.++...+ ++|+ +.++++++. .+++|.+||..+ .+.+..+
T Consensus 364 ~g~~ph~g~g~~~-~~p~~g~~~~s~~~-------------------------~d~~V~v~d~~~~~~~~~~~~~v~~l- 416 (543)
T 1nir_A 364 VGKTPHPGRGANF-VHPKYGPVWSTSHL-------------------------GDGSISLIGTDPKNHPQYAWKKVAEL- 416 (543)
T ss_dssp CSSSBCCTTCEEE-EETTTEEEEEEEBS-------------------------SSSEEEEEECCTTTCTTTBTSEEEEE-
T ss_pred cCCCCCCCCCccc-CCCCCccEEEeccC-------------------------CCceEEEEEeCCCCCchhcCeEEEEE-
Confidence 4 33333333 4676 555555542 267888999887 4544443
Q ss_pred ecCCCCCCCCcCCeEEEEcCCCCEEEEEE--ecC---CCEEEEEEccCCCCC-CCccc-----ccccCCceEEEEEEeCC
Q 000961 356 IRRPGSTSLNQSPRTLSYSPTENAVLICS--DVD---GGSYELYVIPKDSIG-RGDSV-----QDAKKGLGGSAIFIARN 424 (1208)
Q Consensus 356 ~~~~~~~~~~~~i~~l~~spdg~~llv~~--~~~---~g~v~l~~l~~~~~~-~~~~~-----~~~~~~~i~~~~fs~d~ 424 (1208)
+..+. .+..++++|+++++.+.+ +.+ +++|.+|++.+.... +.+.. +..+...+..+.|+++|
T Consensus 417 -~~~g~-----~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 417 -QGQGG-----GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp -ECSCS-----CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred -EcCCC-----CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 33332 667899999999988765 111 469999999876543 11100 12445688999999999
Q ss_pred cEEEEEc-----CCCEEEEEecC-CceeeeecCCc
Q 000961 425 RFAVLDK-----SSNQVLVKNLK-NEVVKKSILPI 453 (1208)
Q Consensus 425 ~~l~~~~-----~dg~I~Iwdl~-~~~~~~l~~~~ 453 (1208)
+.+.++. .++.|.|||.+ ++++++++.+.
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CEEEEEeecCCCCCCeEEEEECCCceEEEeecCCC
Confidence 9887652 37999999998 66777777543
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.1e-23 Score=270.08 Aligned_cols=326 Identities=7% Similarity=0.025 Sum_probs=241.9
Q ss_pred CCCEEEEEEeCCCCEEEEEec-CC-----eEEEEECCCCeEEEEeccccc------------------------CEEEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLH-SG-----VIQLWDYRMGTLIDRFDEHDG------------------------PVRGVH 58 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~-dg-----~I~iWd~~~g~~i~~l~~h~~------------------------~V~~l~ 58 (1208)
...|.+++|||||++|++++. +| .|.+||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999988 88 999999999988777765543 388999
Q ss_pred EEcCCCEEEEEECCCeEEEEECCCCe--EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC
Q 000961 59 FHKSQPLFVSGGDDYKIKVWNYKMHR--CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH 136 (1208)
Q Consensus 59 fsp~~~~Lasgs~Dg~I~vWd~~~~~--~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~ 136 (1208)
|||||++|++++. +.|.+||+.++. ....+..|...+..++|||||++|++++ ++.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999999987 899999999873 4456777888999999999999999988 46999999999887765554443
Q ss_pred C----------------EEEEEEeeCCCEEEEEECCC---------------------------------eEEEEECCC-
Q 000961 137 Y----------------VMCASFHPKEDLVVSASLDQ---------------------------------TVRVWDIGA- 166 (1208)
Q Consensus 137 ~----------------V~~l~~~p~~~~l~s~s~Dg---------------------------------~V~vwdl~~- 166 (1208)
. +.++.|+|+|++|++++.|+ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 37799999999999987765 677777765
Q ss_pred CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEE
Q 000961 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD-----DRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~-----dg~I~iwd~~~~~~~~~ 241 (1208)
.+..... ....|...+..++| |||+.|++++. +..|++||+.+++. .
T Consensus 274 ~~~~~~~-------------------------~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~ 325 (741)
T 2ecf_A 274 AQTQWID-------------------------LGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--R 325 (741)
T ss_dssp CCCEEEC-------------------------CCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--E
T ss_pred CceEEec-------------------------CCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--E
Confidence 4322100 00146677899999 99999998764 56799999999886 3
Q ss_pred EeecCcCC----CeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEeecCCCCEEEE-EEeCCCCEEEEEECCCeee
Q 000961 242 DTLRGHMN----NVSCVMFHAKQDIIVSNSEDKSIRVWDVT-KRTGVQTFRREHDRFWIL-ASHPEMNLLAAGHDSGMIV 315 (1208)
Q Consensus 242 ~~l~~h~~----~V~~l~~sp~g~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~i~~l-a~sp~~~~la~g~~~gi~v 315 (1208)
..+..+.. .+.+++|+|+|+++++++.||.+++|.+. ++. ...+..+...+..+ .|+|+++.+++.....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~--- 401 (741)
T 2ecf_A 326 VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE--- 401 (741)
T ss_dssp EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS---
T ss_pred EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC---
Confidence 33333332 45688999999999999999988888765 344 66777777778777 5999998776544311
Q ss_pred EeeCCCcceEEecCCEEEEEeCCeEEEEEccC-CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCC--CEEE
Q 000961 316 FKLERERPAFAVSGDSLFYAKDRFLRYYEFST-QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG--GSYE 392 (1208)
Q Consensus 316 ~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~--g~v~ 392 (1208)
....+++|++.. +..... +.. . . .+.+++|+|||+.+++...+.+ ..+.
T Consensus 402 --------------------~~~~~~l~~~~~~g~~~~~--l~~-~--~---~~~~~~~spdg~~l~~~~~~~~~p~~~~ 453 (741)
T 2ecf_A 402 --------------------SARESQIYAVPLQGGQPQR--LSK-A--P---GMHSASFARNASVYVDSWSNNSTPPQIE 453 (741)
T ss_dssp --------------------CTTCBEEEEEETTCCCCEE--CCC-S--C---SEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred --------------------CCceEEEEEEEcCCCCeee--ccc-C--C---CceEEEECCCCCEEEEEecCCCCCCeEE
Confidence 122566777654 332222 221 1 2 6678999999999887765433 3455
Q ss_pred EEEc
Q 000961 393 LYVI 396 (1208)
Q Consensus 393 l~~l 396 (1208)
+++.
T Consensus 454 l~~~ 457 (741)
T 2ecf_A 454 LFRA 457 (741)
T ss_dssp EEET
T ss_pred EEEc
Confidence 5544
No 135
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=4.4e-24 Score=237.31 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=155.8
Q ss_pred CCEEEEEEeCC----CCEEEEEec--------------------CCeEEEEEC-CCCeEEEEecccccCEEEEEEEc---
Q 000961 10 NRVKGLSFHSK----RPWILASLH--------------------SGVIQLWDY-RMGTLIDRFDEHDGPVRGVHFHK--- 61 (1208)
Q Consensus 10 ~~V~~lafspd----g~~Lasg~~--------------------dg~I~iWd~-~~g~~i~~l~~h~~~V~~l~fsp--- 61 (1208)
..|++++|+|| +++++++++ |+.|++|++ .+|+.+..+..|...++.++|+|
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence 36778888888 888887664 788888888 45777777778888888888888
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEccCC---CCEEEEEEcCCCCEE------------EEEECCCcEEEEECCCCe
Q 000961 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL---DYIRTVQFHHEYPWI------------VSASDDQTIRIWNWQSRT 126 (1208)
Q Consensus 62 ~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~---~~I~~v~fs~d~~~l------------~s~s~Dg~I~iwd~~s~~ 126 (1208)
++.+|++|+.|++|+|||+++++++.++.+|. ..+.+++|+|++.++ ++|+.|++|++||..+++
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 77899999999999999999999999998754 367788999999876 568889999999999999
Q ss_pred EEEEE-----ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 127 CISVL-----TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 127 ~i~~l-----~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
.+.++ .+|...+.+..++ +.++++++.|++|++||+.+++. ...+.
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~---------------------------l~tL~ 322 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQC---------------------------TALLP 322 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSE---------------------------EEEEC
T ss_pred EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcE---------------------------EEEec
Confidence 88776 3676666554444 78999999999999999988653 33667
Q ss_pred ccCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEC
Q 000961 202 GHDRGVN-WAAFHPTLPLIVSGADDRQVKLWRM 233 (1208)
Q Consensus 202 ~h~~~V~-~l~~sp~g~~L~sgs~dg~I~iwd~ 233 (1208)
+|...+. +++|+|+|++|++|+.|++|++||+
T Consensus 323 gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 323 PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 7877655 5899999999999999999999985
No 136
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=3.4e-23 Score=245.78 Aligned_cols=264 Identities=8% Similarity=0.017 Sum_probs=215.0
Q ss_pred EeecCCCCEEEEEEeC--------------CCCEEEEEecC------CeEEEEECCCCeEEEEecccccCEEEEEEEcCC
Q 000961 4 KFETKSNRVKGLSFHS--------------KRPWILASLHS------GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQ 63 (1208)
Q Consensus 4 ~l~~h~~~V~~lafsp--------------dg~~Lasg~~d------g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~ 63 (1208)
.+.+|...+..+++++ .+..++.++.+ +.|++||+. +.....+..|...|.+++|+|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC
Confidence 4677777777777765 26677776654 799999986 55567788899999999999999
Q ss_pred CEEEEEECCC---eEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEECCCc--EEEEECCCCeEEEEEecCCCC
Q 000961 64 PLFVSGGDDY---KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV-SASDDQT--IRIWNWQSRTCISVLTGHNHY 137 (1208)
Q Consensus 64 ~~Lasgs~Dg---~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~-s~s~Dg~--I~iwd~~s~~~i~~l~~h~~~ 137 (1208)
++|++++.++ .|++||+.++++. .+..|...+.+++|+|||++|+ +++.++. |++||+.+++. ..+..|...
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~ 268 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN 268 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc
Confidence 9999999875 9999999998875 5667888999999999999888 6666654 99999998876 567778889
Q ss_pred EEEEEEeeCCCEEEEEEC-CC--eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC
Q 000961 138 VMCASFHPKEDLVVSASL-DQ--TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (1208)
Q Consensus 138 V~~l~~~p~~~~l~s~s~-Dg--~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (1208)
+.+++|+|+|+.|++++. ++ .|.+||+.+.+.. .+..+...+.+++|+|
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~----------------------------~l~~~~~~~~~~~~sp 320 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----------------------------RITWEGSQNQDADVSS 320 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----------------------------ECCCSSSEEEEEEECT
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE----------------------------EEecCCCcccCeEECC
Confidence 999999999999998886 44 6777888764321 2234556788999999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCeeEEEeec
Q 000961 215 TLPLIVSGADD---RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK---SIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 215 ~g~~L~sgs~d---g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg---~I~vwd~~~~~~~~~~~~ 288 (1208)
+|++|++++.+ +.|++||+.+++. ..+..+. .+.+++|+|+|++|++++.++ .|++||+. +.....+..
T Consensus 321 dG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~ 395 (415)
T 2hqs_A 321 DGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA 395 (415)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCCE---EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCC
T ss_pred CCCEEEEEECcCCceEEEEEECCCCCE---EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeC
Confidence 99999988764 5899999998874 3455554 899999999999999988877 79999986 566778888
Q ss_pred CCCCEEEEEEeCCCC
Q 000961 289 EHDRFWILASHPEMN 303 (1208)
Q Consensus 289 ~~~~i~~la~sp~~~ 303 (1208)
+.+.+++++|+|...
T Consensus 396 ~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 396 TDGQVKFPAWSPYLH 410 (415)
T ss_dssp SSSEEEEEEECCCCC
T ss_pred CCCCCcCCccccccc
Confidence 889999999999653
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=9.7e-23 Score=261.34 Aligned_cols=347 Identities=11% Similarity=0.067 Sum_probs=240.9
Q ss_pred ccCEEEEEEEcCCCEEEEEEC-CC-----eEEEEECCCCeEEEEEccCCC------------------------CEEEEE
Q 000961 51 DGPVRGVHFHKSQPLFVSGGD-DY-----KIKVWNYKMHRCLFTLLGHLD------------------------YIRTVQ 100 (1208)
Q Consensus 51 ~~~V~~l~fsp~~~~Lasgs~-Dg-----~I~vWd~~~~~~~~~l~~h~~------------------------~I~~v~ 100 (1208)
...|++++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557999999999999999998 88 999999999988777765433 278999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcc
Q 000961 101 FHHEYPWIVSASDDQTIRIWNWQSRT--CISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDI 178 (1208)
Q Consensus 101 fs~d~~~l~s~s~Dg~I~iwd~~s~~--~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~ 178 (1208)
|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|+|++|++++ ++.|++||+.+++.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~- 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS- 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC-
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc-
Confidence 9999999999986 999999999873 3455677888899999999999999988 5699999998755432211000
Q ss_pred eeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC--------------------------------
Q 000961 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-------------------------------- 226 (1208)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg-------------------------------- 226 (1208)
..+..+.. ..........+..++|+|||++|++++.|+
T Consensus 193 -------~~~~~g~~---~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 193 -------TTIGNGIA---EFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp -------SSEEESCC---CHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred -------cceecccc---ceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 00000000 000000112357799999999999988765
Q ss_pred -cEEEEECCC-CceeEEEeecCcCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCeeEEEeecCCC----CEEE
Q 000961 227 -QVKLWRMNE-TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSE-----DKSIRVWDVTKRTGVQTFRREHD----RFWI 295 (1208)
Q Consensus 227 -~I~iwd~~~-~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~-----dg~I~vwd~~~~~~~~~~~~~~~----~i~~ 295 (1208)
.|.+||+.+ ++...+.....|...+.+++| |||++|++++. +..|++||+.+++....+..+.. .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 788999988 775322222257788999999 99999997764 56799999999988777665543 3457
Q ss_pred EEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEcc-CCcceeeEeecCCCCCCCCcCCeEE-EE
Q 000961 296 LASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS-TQKDTQVIPIRRPGSTSLNQSPRTL-SY 373 (1208)
Q Consensus 296 la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~i~~l-~~ 373 (1208)
++|+|+|++++++..+ +.+++|.+. +++ ...+... ...+..+ .|
T Consensus 342 ~~~spdg~~~~~~~~~--------------------------g~~~l~~~~~~~~---~~~l~~~-----~~~v~~~~~~ 387 (741)
T 2ecf_A 342 LRFLDDGSILWSSERT--------------------------GFQHLYRIDSKGK---AAALTHG-----NWSVDELLAV 387 (741)
T ss_dssp CEECTTSCEEEEECTT--------------------------SSCEEEEECSSSC---EEESCCS-----SSCEEEEEEE
T ss_pred eEECCCCeEEEEecCC--------------------------CccEEEEEcCCCC---eeeeeec-----ceEEEeEeEE
Confidence 8999999977776643 334444443 222 1222221 1156676 59
Q ss_pred cCCCCEEEEEEecCCC--EEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCC----CEEEEEecCCceee
Q 000961 374 SPTENAVLICSDVDGG--SYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSS----NQVLVKNLKNEVVK 447 (1208)
Q Consensus 374 spdg~~llv~~~~~~g--~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~d----g~I~Iwdl~~~~~~ 447 (1208)
+|+++.+++.+. .++ .+++|.+.... .....+.. ...+.++.|+||+++++....+ ..+.+++..++.+.
T Consensus 388 s~dg~~l~~~~~-~~~~~~~~l~~~~~~g--~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~ 463 (741)
T 2ecf_A 388 DEKAGLAYFRAG-IESARESQIYAVPLQG--GQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIA 463 (741)
T ss_dssp ETTTTEEEEEEC-SSCTTCBEEEEEETTC--CCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEE
T ss_pred eCCCCEEEEEEe-CCCCceEEEEEEEcCC--CCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEE
Confidence 999998876655 344 78899986432 11112333 4457789999999887765432 35778887665444
Q ss_pred ee
Q 000961 448 KS 449 (1208)
Q Consensus 448 ~l 449 (1208)
.+
T Consensus 464 ~l 465 (741)
T 2ecf_A 464 TL 465 (741)
T ss_dssp CS
T ss_pred Ee
Confidence 43
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.2e-23 Score=268.94 Aligned_cols=354 Identities=10% Similarity=0.025 Sum_probs=246.5
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEeccccc---CEEEEEEEcCCCEEEEEECC---------CeEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDG---PVRGVHFHKSQPLFVSGGDD---------YKIKV 77 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~---~V~~l~fsp~~~~Lasgs~D---------g~I~v 77 (1208)
..+.+++|+|||+++++ +.||+|++||..+++....+..|.. .|.+++|||||++|++++.+ +.|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 34678999999997776 6899999999999998888877765 49999999999999999874 78899
Q ss_pred EECCCCeEEEEEc---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCE----------------
Q 000961 78 WNYKMHRCLFTLL---GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV---------------- 138 (1208)
Q Consensus 78 Wd~~~~~~~~~l~---~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V---------------- 138 (1208)
||+.+++. ..+. +|...+..++|||||++|++++. +.|++||+.+++.......+...+
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 99998876 3333 44555889999999999999886 799999999988777666544333
Q ss_pred --EEEEEeeCCCEEEEEECC-CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 139 --MCASFHPKEDLVVSASLD-QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 139 --~~l~~~p~~~~l~s~s~D-g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
.+++|+|+|+.|++++.| +.+.+|++..... .+...+..+.|+++
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~ 221 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG--------------------------------SIYPTVKPYHYPKA 221 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS--------------------------------SSSCCCEEEECCBT
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCC--------------------------------cCCCcceeccCCCC
Confidence 789999999999988755 4677777643110 12234677888887
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEeecCc------CCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCeeEEE
Q 000961 216 LPLIVSGADDRQVKLWRMNETKAWEVDTLRGH------MNNVSCVMFHAKQDIIVSNSE----DKSIRVWDVTKRTGVQT 285 (1208)
Q Consensus 216 g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h------~~~V~~l~~sp~g~~l~sgs~----dg~I~vwd~~~~~~~~~ 285 (1208)
|.. ..+..|++||+.+++. ...+..+ ...+.+++|+|||+++++.+. +..|++||+.+++....
T Consensus 222 G~~----~~~~~l~~~d~~~~~~--~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 222 GSE----NPSISLHVIGLNGPTH--DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp TSC----CCEEEEEEEESSSSCC--CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCC----CCeeEEEEEECCCCce--eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 752 3345899999988774 2334433 667899999999998877653 35799999999887766
Q ss_pred eecC-CCCE----EEEEEeCCCCEEEEE-E-CCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEE-ccCCcceeeEeec
Q 000961 286 FRRE-HDRF----WILASHPEMNLLAAG-H-DSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYE-FSTQKDTQVIPIR 357 (1208)
Q Consensus 286 ~~~~-~~~i----~~la~sp~~~~la~g-~-~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d-~~~~~~~~~~~~~ 357 (1208)
+..+ ...+ ..++|+|||+.++.. + .++-. . ....|.+|| ..++.......+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~--------~------------~~~~l~~~d~~~~~~~~~~~~l~ 355 (723)
T 1xfd_A 296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR--------G------------KFYHITVSSSQPNSSNDNIQSIT 355 (723)
T ss_dssp EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS--------S------------CEEEEEEECSSCCSSSCCCCBSC
T ss_pred EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC--------c------------ceeEEEEEeccCCCCccceeEee
Confidence 5433 2333 378999999977654 3 22100 0 011455666 3444310011111
Q ss_pred CCCCCCCCcCCeE-EEEcCCCCEEEEEEecCC--CEEEEEEccCCCCCCCcccccc---cCCceEEEEEEeCCcEEEEEc
Q 000961 358 RPGSTSLNQSPRT-LSYSPTENAVLICSDVDG--GSYELYVIPKDSIGRGDSVQDA---KKGLGGSAIFIARNRFAVLDK 431 (1208)
Q Consensus 358 ~~~~~~~~~~i~~-l~~spdg~~llv~~~~~~--g~v~l~~l~~~~~~~~~~~~~~---~~~~i~~~~fs~d~~~l~~~~ 431 (1208)
. ++ + .+.. ++|+|||+.+++.+. ++ +.+++|.+......... .+.. +...+..+.|+|||++++...
T Consensus 356 ~-~~---~-~~~~~~~~spdg~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 356 S-GD---W-DVTKILAYDEKGNKIYFLST-EDLPRRRQLYSANTVGNFNRQ-CLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp C-SS---S-CEEEEEEEETTTTEEEEEES-SSCTTCCEEEEECSSTTCCCB-CSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred c-CC---e-EEEeeeEEcCCCCEEEEEEc-CCCCcceEEEEEeCCCCCCcc-eecccccCCCCeEEEEECCCCCEEEEEc
Confidence 1 11 1 3343 699999999877655 33 78899998754321111 2222 455677889999988777654
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.8e-22 Score=257.99 Aligned_cols=362 Identities=7% Similarity=-0.008 Sum_probs=246.9
Q ss_pred cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCC---CEEEEEEcCCCCEEEEEECC---------CcEEE
Q 000961 52 GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLD---YIRTVQFHHEYPWIVSASDD---------QTIRI 119 (1208)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~---~I~~v~fs~d~~~l~s~s~D---------g~I~i 119 (1208)
..+.+++|+|+|+++++ +.||+|++||..+++....+.+|.. .|.+++|||||++|++++.+ +.|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 34678999999997776 7899999999999988888877765 49999999999999999875 78889
Q ss_pred EECCCCeEEEEEe---cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceE
Q 000961 120 WNWQSRTCISVLT---GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1208)
Q Consensus 120 wd~~s~~~i~~l~---~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1208)
||+.+++. ..+. +|...+.+++|+|+|+.|++++. +.|++||+.+++........ ....
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~---------------~~~~- 157 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG---------------KEGV- 157 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC---------------BTTT-
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC---------------CCCc-
Confidence 99998876 3333 34445889999999999999985 89999999875543211100 0000
Q ss_pred EEEEeccC---------CCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEE
Q 000961 197 KYVLEGHD---------RGVNWAAFHPTLPLIVSGADD-RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSN 266 (1208)
Q Consensus 197 ~~~~~~h~---------~~V~~l~~sp~g~~L~sgs~d-g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sg 266 (1208)
...++. ..+.+++|+|||+.|++++.+ +.+.+|++..... .+...+..+.|+++|..
T Consensus 158 --~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~G~~---- 224 (723)
T 1xfd_A 158 --IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------SIYPTVKPYHYPKAGSE---- 224 (723)
T ss_dssp --EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------SSSCCCEEEECCBTTSC----
T ss_pred --eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC-------cCCCcceeccCCCCCCC----
Confidence 011111 234789999999999988754 4677787653321 13345788899888763
Q ss_pred eCCCcEEEEeCCCCeeEEEeecC------CCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeE
Q 000961 267 SEDKSIRVWDVTKRTGVQTFRRE------HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFL 340 (1208)
Q Consensus 267 s~dg~I~vwd~~~~~~~~~~~~~------~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i 340 (1208)
..+..|++||+.+++....+..+ ...+..++|+|||+++++....+- .+..|
T Consensus 225 ~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~----------------------~~~~i 282 (723)
T 1xfd_A 225 NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ----------------------NVSIL 282 (723)
T ss_dssp CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS----------------------CEEEE
T ss_pred CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC----------------------CeEEE
Confidence 33458999999988865666543 456889999999998876643220 24578
Q ss_pred EEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCC----EEEEEEcc--CCCCCCCcccccccCCc
Q 000961 341 RYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGG----SYELYVIP--KDSIGRGDSVQDAKKGL 414 (1208)
Q Consensus 341 ~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g----~v~l~~l~--~~~~~~~~~~~~~~~~~ 414 (1208)
++||+.+++...+......+. . ......++|+|||+.+++.+...++ ..++|.++ ..........+......
T Consensus 283 ~~~d~~~g~~~~~~~~~~~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 360 (723)
T 1xfd_A 283 TLCDATTGVCTKKHEDESEAW-L-HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD 360 (723)
T ss_dssp EEEETTTCCEEEEEEEECSSC-C-CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred EEEeCCCCcceEEEEeccCCE-E-eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeE
Confidence 899999887655543322111 0 0012478999999988876444556 55555554 22110001123322333
Q ss_pred eEE-EEEEeCCcEEEEEcCC---CEEEEEecC--Cc-eeeeecC----CcceEEEEEeCCccEEEE
Q 000961 415 GGS-AIFIARNRFAVLDKSS---NQVLVKNLK--NE-VVKKSIL----PIAADAIFYAGTGNLLCR 469 (1208)
Q Consensus 415 i~~-~~fs~d~~~l~~~~~d---g~I~Iwdl~--~~-~~~~l~~----~~~v~~i~~s~dg~~Las 469 (1208)
+.. ++|+|||+.+++.+.+ +.+.+|+++ +. ....+.. ...+..+.|||+|+.++.
T Consensus 361 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 444 6999999988765544 789999986 22 3444543 236889999999998876
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=6.8e-22 Score=252.02 Aligned_cols=324 Identities=10% Similarity=0.042 Sum_probs=229.5
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE-EEecccc-----------------cCEEEEEEEcCCCEEEEEECC
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI-DRFDEHD-----------------GPVRGVHFHKSQPLFVSGGDD 72 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i-~~l~~h~-----------------~~V~~l~fsp~~~~Lasgs~D 72 (1208)
.+..+.|+ |..+++++.+| | +||+.+|+.+ ..+..|. ..|.+++|||+ ..++.+. +
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 35567888 66777777777 8 9999999874 4443443 56999999999 6666654 4
Q ss_pred CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-----CeEEEEEecCCCC----------
Q 000961 73 YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-----RTCISVLTGHNHY---------- 137 (1208)
Q Consensus 73 g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-----~~~i~~l~~h~~~---------- 137 (1208)
+.|++||+.+++... +..+...+.+++|||||++|+++ .++.|++||+.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 999999999887654 44567788999999999999985 679999999998 7776555444333
Q ss_pred ----EEEEEEeeCCCEEEEEE---------------------------------CCCeEEEEECCCCccccccCCCccee
Q 000961 138 ----VMCASFHPKEDLVVSAS---------------------------------LDQTVRVWDIGALRKKTVSPADDILR 180 (1208)
Q Consensus 138 ----V~~l~~~p~~~~l~s~s---------------------------------~Dg~V~vwdl~~~~~~~~~~~~~~~~ 180 (1208)
+.++.|+|+|++|++++ .+..|.+||+.+.+.....
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~------- 251 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ------- 251 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC-------
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec-------
Confidence 47899999999999987 4467888888764432110
Q ss_pred eccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC-ceeEEEeecCcC---CCe
Q 000961 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-----QVKLWRMNET-KAWEVDTLRGHM---NNV 251 (1208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg-----~I~iwd~~~~-~~~~~~~l~~h~---~~V 251 (1208)
....|...+..++|+|+|+.|++++.++ .|++||..++ ....+.. ..+. ..+
T Consensus 252 ------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~ 312 (706)
T 2z3z_A 252 ------------------TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-ETDKHYVEPL 312 (706)
T ss_dssp ------------------CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EECSSCCCCC
T ss_pred ------------------cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-ccCCCeECcc
Confidence 1124667799999999999999988776 8999999988 3321211 1222 234
Q ss_pred EEEEEcc--CCCEEEEEeCCCcEEEEeCC-CCeeEEEeecCCCCEEE-EEEeCCCCEEEEEECCCeeeEeeCCCcceEEe
Q 000961 252 SCVMFHA--KQDIIVSNSEDKSIRVWDVT-KRTGVQTFRREHDRFWI-LASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (1208)
Q Consensus 252 ~~l~~sp--~g~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~~~~i~~-la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~ 327 (1208)
.++.|+| +|+++++++.||.+++|++. ++..+..+..+...+.. ++|+|+++.+++++...-.
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~------------- 379 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP------------- 379 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT-------------
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC-------------
Confidence 6789999 99999999999999999876 56677777777666776 7999999987766532100
Q ss_pred cCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCC--CEEEEEEccC
Q 000961 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG--GSYELYVIPK 398 (1208)
Q Consensus 328 ~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~--g~v~l~~l~~ 398 (1208)
....|..||..+++...+ .. . . .+.+++|+|||+++++...+.+ +.+.+|++.+
T Consensus 380 --------~~~~l~~~d~~~~~~~~l---~~-~--~---~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 380 --------LERHFYCIDIKGGKTKDL---TP-E--S---GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp --------TCBEEEEEETTCCCCEES---CC-S--S---SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred --------ceEEEEEEEcCCCCceec---cC-C--C---ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 012556677766653222 11 1 2 6788999999999887655332 5788888764
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=2.3e-20 Score=215.69 Aligned_cols=275 Identities=8% Similarity=0.024 Sum_probs=218.3
Q ss_pred CCCCEEEEEEeCCCCEEEEEec-------CCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEE-EECCCeEEEEE
Q 000961 8 KSNRVKGLSFHSKRPWILASLH-------SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDYKIKVWN 79 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~-------dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg~I~vWd 79 (1208)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+.+++|+|+++++++ ...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3457889999999999988874 56899999999998888854 345788999999996555 45579999999
Q ss_pred CCCCeEEEEEccCCCC---------EEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCC
Q 000961 80 YKMHRCLFTLLGHLDY---------IRTVQFHHEYPWIVSAS--DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148 (1208)
Q Consensus 80 ~~~~~~~~~l~~h~~~---------I~~v~fs~d~~~l~s~s--~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~ 148 (1208)
..+++.+..+..+... +.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 9999988888765432 78999999999888776 478999999999999988886666788999999999
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC-CCc
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQ 227 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~-dg~ 227 (1208)
.+++++.++.|.+||..+.+...... ....++...+..++|+|+++++++++. ++.
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKK-----------------------LLDDGKEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEE-----------------------CCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEE-----------------------cCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence 99999999999999998755332100 001124556888999999998777665 499
Q ss_pred EEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEE
Q 000961 228 VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLA 306 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs-~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la 306 (1208)
|.+||..+++. +..+.... ..+++|+|+++++++++ .++.|.+||..+++.+..+... ..+..++|+|+++++.
T Consensus 255 v~~~d~~~~~~--~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 255 VLVVDTRNGNI--LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLY 329 (353)
T ss_dssp EEEEETTTCCE--EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEE
T ss_pred EEEEECCCCcE--EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEE
Confidence 99999998886 33333322 25799999999666555 6899999999999988887654 4679999999999777
Q ss_pred EEECC
Q 000961 307 AGHDS 311 (1208)
Q Consensus 307 ~g~~~ 311 (1208)
++...
T Consensus 330 v~~~~ 334 (353)
T 3vgz_A 330 VSVKQ 334 (353)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 66543
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.9e-20 Score=214.65 Aligned_cols=284 Identities=10% Similarity=0.076 Sum_probs=206.6
Q ss_pred EEEeCCCCE-EEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC-CCeEEEEECCCCeE-EEEEcc
Q 000961 15 LSFHSKRPW-ILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-DYKIKVWNYKMHRC-LFTLLG 91 (1208)
Q Consensus 15 lafspdg~~-Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-Dg~I~vWd~~~~~~-~~~l~~ 91 (1208)
..|++++++ +++...++.|.+||..+++.+..+..+...+ +++|+|+++++++++. ++.|.+||..+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 356676666 5566778999999999999988887777777 9999999997766665 89999999999887 777777
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCC---cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEE-ECCCe-EEEEECCC
Q 000961 92 HLDYIRTVQFHHEYPWIVSASDDQ---TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSA-SLDQT-VRVWDIGA 166 (1208)
Q Consensus 92 h~~~I~~v~fs~d~~~l~s~s~Dg---~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~-s~Dg~-V~vwdl~~ 166 (1208)
+..+..+++|+|++++++++..++ .|.+||+.+++.+..+..+ ..+.+++|+|+|++++++ ..++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 776666699999999999555553 8999999999998887754 456899999999755554 55588 99999875
Q ss_pred CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcee-EEEee
Q 000961 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAW-EVDTL 244 (1208)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~-~~~~l 244 (1208)
..... +.. . ...........++|+|+|+++++++ .++.|.+||+.+++.. .+..+
T Consensus 161 ~g~~~---------------------~~~-~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~ 217 (331)
T 3u4y_A 161 DGVLF---------------------DTG-Q-EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV 217 (331)
T ss_dssp TCCEE---------------------EEE-E-EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred CCcEe---------------------ecC-C-ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec
Confidence 32110 000 1 1113345678999999999665554 6899999999887741 13333
Q ss_pred cCcCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCee--EEEeecC----CCC---EEEEEEeCCCCEEEEEECCCee
Q 000961 245 RGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVTKRTG--VQTFRRE----HDR---FWILASHPEMNLLAAGHDSGMI 314 (1208)
Q Consensus 245 ~~h~~~V~~l~~sp~g~~l~sgs-~dg~I~vwd~~~~~~--~~~~~~~----~~~---i~~la~sp~~~~la~g~~~gi~ 314 (1208)
. ....+..++|+|+|+++++++ .++.|.+||..+++. +..+... ... ...++|+|+++++++++.
T Consensus 218 ~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---- 292 (331)
T 3u4y_A 218 G-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN---- 292 (331)
T ss_dssp E-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET----
T ss_pred c-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecC----
Confidence 3 346678999999999776654 477899999998877 4433322 111 244788998887766553
Q ss_pred eEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCc
Q 000961 315 VFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1208)
Q Consensus 315 v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~ 349 (1208)
.++.|.+||+.+..
T Consensus 293 ---------------------~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 293 ---------------------ISRELKVFTISGKV 306 (331)
T ss_dssp ---------------------TTTEEEEEETTSCE
T ss_pred ---------------------CCCcEEEEEecCCc
Confidence 35678888887643
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.3e-20 Score=214.42 Aligned_cols=300 Identities=12% Similarity=0.126 Sum_probs=206.7
Q ss_pred CEEEEE-ecCCeEEEEECC-CC--eEEEEecccccCEEEEEEEcCCCEEEEEECC-CeEEEEECC--CCe--EEEEEccC
Q 000961 22 PWILAS-LHSGVIQLWDYR-MG--TLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD-YKIKVWNYK--MHR--CLFTLLGH 92 (1208)
Q Consensus 22 ~~Lasg-~~dg~I~iWd~~-~g--~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D-g~I~vWd~~--~~~--~~~~l~~h 92 (1208)
++++++ +.++.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 344444 779999999985 34 333333 577789999999999999988876 999999997 554 34455544
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-CCcEEEEECC---CCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEECCC-
Q 000961 93 LDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQ---SRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGA- 166 (1208)
Q Consensus 93 ~~~I~~v~fs~d~~~l~s~s~-Dg~I~iwd~~---s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl~~- 166 (1208)
. .+..++|+|+++++++++. ++.|.+||+. +.+.+..+..+ ..+.+++|+|+++++++++ .++.|.+||+.+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 4 7899999999998877765 7899999994 44455555544 4588999999999888887 899999999976
Q ss_pred CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC--CceeEEEe
Q 000961 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNE--TKAWEVDT 243 (1208)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~--~~~~~~~~ 243 (1208)
.+..... ...........+..++|+|+++++++++ .++.|.+|++.. ++......
T Consensus 162 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 162 GHLVAQD----------------------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp SCEEEEE----------------------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred Cceeeec----------------------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence 2211100 0011112335678899999999776555 789999999954 33211222
Q ss_pred ec---Cc---CCCeEEEEEccCCCEEEEE-eCCCcEEEEeCC--C--CeeEEEeecCCCCEEEEEEeCCCCEEEEEECCC
Q 000961 244 LR---GH---MNNVSCVMFHAKQDIIVSN-SEDKSIRVWDVT--K--RTGVQTFRREHDRFWILASHPEMNLLAAGHDSG 312 (1208)
Q Consensus 244 l~---~h---~~~V~~l~~sp~g~~l~sg-s~dg~I~vwd~~--~--~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~g 312 (1208)
.. .. ...+.+++|+|++++|+++ ..++.|.+||+. + .+.+..+..+.. +..++|+|+++++++++.
T Consensus 220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~-- 296 (343)
T 1ri6_A 220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ-- 296 (343)
T ss_dssp EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECT--
T ss_pred ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecC--
Confidence 21 11 2357789999999988754 478999999998 2 344444544443 788999999998877763
Q ss_pred eeeEeeCCCcceEEecCCEEEEEeCCeEEEEEcc--CCcceeeEeecCCCCCCCCcCCeEEEEcCCCC
Q 000961 313 MIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS--TQKDTQVIPIRRPGSTSLNQSPRTLSYSPTEN 378 (1208)
Q Consensus 313 i~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 378 (1208)
.++.+.+|++. +++...+..+.. +. .+.+++|.|+.+
T Consensus 297 -----------------------~~~~v~v~~~d~~~g~~~~~~~~~~-g~-----~p~~i~~~~~~~ 335 (343)
T 1ri6_A 297 -----------------------KSHHISVYEIVGEQGLLHEKGRYAV-GQ-----GPMWVVVNAHEG 335 (343)
T ss_dssp -----------------------TTCEEEEEEEETTTTEEEEEEEEEC-SS-----SCCEEEEEEEC-
T ss_pred -----------------------CCCeEEEEEEcCCCceeeEcccccc-CC-----CCeeEEEEcccC
Confidence 25667777544 454433333332 22 567778777554
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1.5e-20 Score=239.62 Aligned_cols=333 Identities=12% Similarity=0.075 Sum_probs=218.7
Q ss_pred EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE-EEEccCC-----------------CCEEEEEEcCCCCEEEEEECCC
Q 000961 54 VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL-FTLLGHL-----------------DYIRTVQFHHEYPWIVSASDDQ 115 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~-~~l~~h~-----------------~~I~~v~fs~d~~~l~s~s~Dg 115 (1208)
+..+.|+ +..+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|+|| ..++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4557888 66788888888 8 9999998873 3333332 56999999999 6666654 59
Q ss_pred cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCC-----CccccccCCCcceeeccccccccc
Q 000961 116 TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA-----LRKKTVSPADDILRLSQMNTDLFG 190 (1208)
Q Consensus 116 ~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1208)
+|++||+.+++.... ..+...+.+++|+|+|+.|+++ .++.|++||+.+ ++......... ..+..
T Consensus 102 ~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~--------~~~~~ 171 (706)
T 2z3z_A 102 GLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT--------ETLVY 171 (706)
T ss_dssp EEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB--------TTEEE
T ss_pred EEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC--------CCeEc
Confidence 999999998876544 4466778899999999999985 589999999987 54332111000 00000
Q ss_pred cccceEEEEEeccCCCeEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCc
Q 000961 191 GVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA---------------------------------DDRQVKLWRMNETK 237 (1208)
Q Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs---------------------------------~dg~I~iwd~~~~~ 237 (1208)
+.. ....+...+.+++|+|||++|++++ .+..|++||+.+++
T Consensus 172 g~~-----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 172 GQA-----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp SSC-----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred ccc-----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 000 1112233467899999999999987 44679999999887
Q ss_pred eeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCeeEEEee-cCCC----CEEEEEEeC--CCCEE
Q 000961 238 AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK-----SIRVWDVTKRTGVQTFR-REHD----RFWILASHP--EMNLL 305 (1208)
Q Consensus 238 ~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg-----~I~vwd~~~~~~~~~~~-~~~~----~i~~la~sp--~~~~l 305 (1208)
...+.....|...+.+++|+|||++|++++.++ .|++||+.+++....+. .... .+..++|+| +|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI 326 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEE
Confidence 532322235677899999999999999988775 89999999984333332 2221 235678999 99887
Q ss_pred EEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEcc-CCcceeeEeecCCCCCCCCcCCeE-EEEcCCCCEEEEE
Q 000961 306 AAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS-TQKDTQVIPIRRPGSTSLNQSPRT-LSYSPTENAVLIC 383 (1208)
Q Consensus 306 a~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~llv~ 383 (1208)
+++.. ++.+++|.+. ++..... +.. + ...+.. ++|+|+|+.++++
T Consensus 327 ~~~~~--------------------------~g~~~l~~~~~~~~~~~~--l~~--~---~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 327 WQSRR--------------------------DGWNHLYLYDTTGRLIRQ--VTK--G---EWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp EEECT--------------------------TSSCEEEEEETTSCEEEE--CCC--S---SSCEEEEEEECTTSSEEEEE
T ss_pred EEEcc--------------------------CCccEEEEEECCCCEEEe--cCC--C---CeEEEeeeEEcCCCCEEEEE
Confidence 77653 3445566554 3332222 221 1 114555 7999999988877
Q ss_pred EecCC---CEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEcCC----CEEEEEecCCce
Q 000961 384 SDVDG---GSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDKSS----NQVLVKNLKNEV 445 (1208)
Q Consensus 384 ~~~~~---g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~d----g~I~Iwdl~~~~ 445 (1208)
+..++ ..+..|++.+.. .. .+ .+...+.+++|+|||++++....+ +.|.+||+.+..
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~---~~-~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGK---TK-DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCC---CE-ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ecCCCCceEEEEEEEcCCCC---ce-ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 65332 245555544322 11 22 245568899999999887766433 569999998554
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=2.7e-21 Score=216.57 Aligned_cols=252 Identities=9% Similarity=0.019 Sum_probs=196.9
Q ss_pred EecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC-CeEEEEEccC-CCCEEEEEEcCC
Q 000961 27 SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM-HRCLFTLLGH-LDYIRTVQFHHE 104 (1208)
Q Consensus 27 g~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~-~~~~~~l~~h-~~~I~~v~fs~d 104 (1208)
++.++.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......| ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 3568899999999888764 456899999999999999999987 78999999998 8777666565 367899999999
Q ss_pred CCEEEEEEC--CCcEEEE--ECCCCeEEEEEecCCCCEEEEEEeeCCCEEE-EEECCCeEEEEECCCCccccccCCCcce
Q 000961 105 YPWIVSASD--DQTIRIW--NWQSRTCISVLTGHNHYVMCASFHPKEDLVV-SASLDQTVRVWDIGALRKKTVSPADDIL 179 (1208)
Q Consensus 105 ~~~l~s~s~--Dg~I~iw--d~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~-s~s~Dg~V~vwdl~~~~~~~~~~~~~~~ 179 (1208)
+++|++++. ++...|| +..++. ...+..+ ..+.+++|+|+++.|+ +++.++.+++|++......
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~--------- 164 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV--------- 164 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---------
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc---------
Confidence 999999983 3445555 555554 3444434 3489999999999877 7788999999986431110
Q ss_pred eeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCceeEEEeecCcCCCeEEEEEc
Q 000961 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMN-ETKAWEVDTLRGHMNNVSCVMFH 257 (1208)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~-~~~~~~~~~l~~h~~~V~~l~~s 257 (1208)
...+..+...+.+++|+|+++.|++++ .++.+++|++. .+.. ...+..|...+.++.|+
T Consensus 165 -----------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~s 225 (297)
T 2ojh_A 165 -----------------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS--VERITDSAYGDWFPHPS 225 (297)
T ss_dssp -----------------EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--EEECCCCSEEEEEEEEC
T ss_pred -----------------ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC--cEEEecCCcccCCeEEC
Confidence 113445677899999999999888776 58999999886 3333 56677788889999999
Q ss_pred cCCCEEEEEeCC-----------CcEEEEeCCCCeeE--EEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 258 AKQDIIVSNSED-----------KSIRVWDVTKRTGV--QTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 258 p~g~~l~sgs~d-----------g~I~vwd~~~~~~~--~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
|++++|++++.+ +.|.+||+.+++.. ..+..+...+..++|+|+++.|+++++
T Consensus 226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 999999988766 56999999887653 334467778899999999998887764
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.3e-19 Score=207.74 Aligned_cols=288 Identities=8% Similarity=0.063 Sum_probs=206.6
Q ss_pred EEEEcCCCE-EEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeE-EEEEec
Q 000961 57 VHFHKSQPL-FVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQSRTC-ISVLTG 133 (1208)
Q Consensus 57 l~fsp~~~~-Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~-Dg~I~iwd~~s~~~-i~~l~~ 133 (1208)
..|.+++.+ +++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||..+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 346666554 6777889999999999999988887777777 9999999997777766 88999999999987 777777
Q ss_pred CCCCEEEEEEeeCCCEEEEEECCC---eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEE
Q 000961 134 HNHYVMCASFHPKEDLVVSASLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWA 210 (1208)
Q Consensus 134 h~~~V~~l~~~p~~~~l~s~s~Dg---~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 210 (1208)
+..+..+++|+|++++++++..++ .|.+||+.+.+... .+. +.....++
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~---------------------------~~~-~~~~~~~~ 133 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS---------------------------TIP-IPYDAVGI 133 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE---------------------------EEE-CCTTEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE---------------------------EEE-CCCCccce
Confidence 766666699999999999655553 89999997754321 222 23456899
Q ss_pred EEcCCCCEEEE-EeCCCc-EEEEECCCCceeE-E-EeecCcCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCee---
Q 000961 211 AFHPTLPLIVS-GADDRQ-VKLWRMNETKAWE-V-DTLRGHMNNVSCVMFHAKQDIIVSN-SEDKSIRVWDVTKRTG--- 282 (1208)
Q Consensus 211 ~~sp~g~~L~s-gs~dg~-I~iwd~~~~~~~~-~-~~l~~h~~~V~~l~~sp~g~~l~sg-s~dg~I~vwd~~~~~~--- 282 (1208)
+|+|+|+++++ ...++. |.+|++....... . .........+.+++|+|+|++++++ ..++.|++||+.+++.
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 99999985554 456688 9999988644311 1 1222345568999999999966555 4688999999998887
Q ss_pred EEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCC--C
Q 000961 283 VQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRP--G 360 (1208)
Q Consensus 283 ~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~--~ 360 (1208)
+..+.. ...+..++|+|+|++++++.. .++.|.+||..+++...+..+... .
T Consensus 214 ~~~~~~-~~~~~~~~~spdg~~l~v~~~-------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~ 267 (331)
T 3u4y_A 214 LNAVGT-NNLPGTIVVSRDGSTVYVLTE-------------------------STVDVFNFNQLSGTLSFVKSFGHGLLI 267 (331)
T ss_dssp EEEEEC-SSCCCCEEECTTSSEEEEECS-------------------------SEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred eeeccC-CCCCceEEECCCCCEEEEEEc-------------------------CCCEEEEEECCCCceeeeccccccccc
Confidence 766664 356678999999997766543 245677888887766333332221 0
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCC
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS 400 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~ 400 (1208)
..........++|+|||+++++++. +++.+.+|++....
T Consensus 268 ~~~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 268 DPRPLFGANQMALNKTETKLFISAN-ISRELKVFTISGKV 306 (331)
T ss_dssp CCGGGTTCCCEEECTTSSEEEEEET-TTTEEEEEETTSCE
T ss_pred CCCCcccccceEECCCCCEEEEecC-CCCcEEEEEecCCc
Confidence 0010112356899999998877654 67899999998654
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=5.3e-19 Score=204.16 Aligned_cols=273 Identities=8% Similarity=0.011 Sum_probs=212.3
Q ss_pred cccCEEEEEEEcCCCEEEEEEC-------CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEE
Q 000961 50 HDGPVRGVHFHKSQPLFVSGGD-------DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSA-SDDQTIRIWN 121 (1208)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~-------Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~-s~Dg~I~iwd 121 (1208)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4556889999999998888773 57899999999998888764 3447889999999966555 4579999999
Q ss_pred CCCCeEEEEEecCCCC---------EEEEEEeeCCCEEEEEE--CCCeEEEEECCCCccccccCCCcceeeccccccccc
Q 000961 122 WQSRTCISVLTGHNHY---------VMCASFHPKEDLVVSAS--LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFG 190 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~~~---------V~~l~~~p~~~~l~s~s--~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1208)
..+++.+..+..+... +.++.|+|+++++++++ .++.|.+||..+.+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~------------------- 178 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT------------------- 178 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE-------------------
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE-------------------
Confidence 9999998888765432 78999999999888776 47899999998754321
Q ss_pred cccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEee--cCcCCCeEEEEEccCCCEEEEEeC
Q 000961 191 GVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL--RGHMNNVSCVMFHAKQDIIVSNSE 268 (1208)
Q Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l--~~h~~~V~~l~~sp~g~~l~sgs~ 268 (1208)
.+..+...+..++|+|+++++++++.++.|.+||..+++....... .++...+.+++|+|+++++++++.
T Consensus 179 --------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 179 --------AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp --------EECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred --------EecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 3333445577899999999999999999999999999886322222 124567889999999998777665
Q ss_pred -CCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccC
Q 000961 269 -DKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFST 347 (1208)
Q Consensus 269 -dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~ 347 (1208)
++.|.+||..+++.+..+..... ..++|+|+++.+.++.. .++.|.+||..+
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~-------------------------~~~~v~~~d~~~ 303 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHR-------------------------QAGKVSVIDAKS 303 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEET-------------------------TTTEEEEEETTT
T ss_pred CCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEEC-------------------------CCCeEEEEECCC
Confidence 48999999999998887775432 56889999886665542 367888999988
Q ss_pred CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
++....+.... .+.+++|+|+|+.++++..
T Consensus 304 ~~~~~~~~~~~--------~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 304 YKVVKTFDTPT--------HPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp TEEEEEEECCS--------EEEEEEECTTSCEEEEEEE
T ss_pred CeEEEEEecCC--------CCCeEEEcCCCCEEEEEEc
Confidence 87765554321 6789999999998887665
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=1.3e-19 Score=207.49 Aligned_cols=273 Identities=6% Similarity=-0.003 Sum_probs=210.4
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEeccccc--CEEEEEEEcCCCEEE-EEECCCeEEEEECCCCeEEEEEcc-C----C
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDG--PVRGVHFHKSQPLFV-SGGDDYKIKVWNYKMHRCLFTLLG-H----L 93 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~--~V~~l~fsp~~~~La-sgs~Dg~I~vWd~~~~~~~~~l~~-h----~ 93 (1208)
+++++++.++.|.+||..+++.+..+..... .+.+++|+|++++++ +++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4788999999999999999999888753322 578999999998664 555678999999999988877653 2 1
Q ss_pred CCEEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 94 DYIRTVQFHHEYPWIVSAS------------DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 94 ~~I~~v~fs~d~~~l~s~s------------~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
..+..++|+|+++++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2567899999999999886 579999999999998887764 4567889999999988887 689999
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccC--CCeEEEEEcCCCCEEEEEeCCC-------------
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD--RGVNWAAFHPTLPLIVSGADDR------------- 226 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~sp~g~~L~sgs~dg------------- 226 (1208)
||+.+.+.... +..+. .+ +.|+|++..+++.+..+
T Consensus 159 ~d~~~~~~~~~---------------------------~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 159 MDPEAGTLVED---------------------------KPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp EETTTTEEEEE---------------------------ECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred EECCCCcEeee---------------------------eeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccc
Confidence 99987553221 11111 22 25677776554443222
Q ss_pred -----------cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEE
Q 000961 227 -----------QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWI 295 (1208)
Q Consensus 227 -----------~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~ 295 (1208)
.|.+||..+++.. ...+..+...+.+++|+|++++++++ ++.|.+||+.+++.+..+... ..+.+
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~ 284 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYS 284 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCE
T ss_pred cccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-Cceee
Confidence 4789999998764 44455667788999999999999888 689999999999888777643 45788
Q ss_pred EEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeec
Q 000961 296 LASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (1208)
Q Consensus 296 la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~ 357 (1208)
++|+|+++++++++ .++.|.+||+.+++.+..+...
T Consensus 285 ~~~s~dg~~l~~~~--------------------------~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 285 VNVSTDGSTVWLGG--------------------------ALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp EEECTTSCEEEEES--------------------------BSSEEEEEETTTCCEEEEEECG
T ss_pred EEECCCCCEEEEEc--------------------------CCCcEEEEECcCCcEEEEEEcC
Confidence 99999999887764 4678899999888776655544
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=9.6e-20 Score=203.91 Aligned_cols=264 Identities=10% Similarity=0.136 Sum_probs=198.0
Q ss_pred EECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEecC-CCCEEEEEEeeC
Q 000961 69 GGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQS-RTCISVLTGH-NHYVMCASFHPK 146 (1208)
Q Consensus 69 gs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s-~~~i~~l~~h-~~~V~~l~~~p~ 146 (1208)
++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 457899999999988866 4556889999999999999999987 78999999999 8877766665 367889999999
Q ss_pred CCEEEEEE--CCCeEEEEEC--CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEE-E
Q 000961 147 EDLVVSAS--LDQTVRVWDI--GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIV-S 221 (1208)
Q Consensus 147 ~~~l~s~s--~Dg~V~vwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~-s 221 (1208)
+++|++++ .++...+|.+ .+.... .+. +...+..++|+|+++.|+ +
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~----------------------------~~~-~~~~~~~~~~spdg~~l~~~ 146 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPR----------------------------LMT-KNLPSYWHGWSPDGKSFTYC 146 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCE----------------------------ECC-SSSSEEEEEECTTSSEEEEE
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceE----------------------------Eee-cCCCccceEECCCCCEEEEE
Confidence 99999999 3345555554 332211 112 223488899999999887 6
Q ss_pred EeCCCcEEEEECC--CCceeEEEeecCcCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC-CCeeEEEeecCCCCEEEEE
Q 000961 222 GADDRQVKLWRMN--ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVWDVT-KRTGVQTFRREHDRFWILA 297 (1208)
Q Consensus 222 gs~dg~I~iwd~~--~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs-~dg~I~vwd~~-~~~~~~~~~~~~~~i~~la 297 (1208)
++.++.+++|++. ++. ...+..+...+.++.|+|++++|++++ .++.+++|++. .+.....+..+...+..++
T Consensus 147 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 223 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGV---ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPH 223 (297)
T ss_dssp EEETTEEEEEEEETTTCC---EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEE
T ss_pred ECCCCceEEEEEECCCCc---ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeE
Confidence 7789999999864 333 456677888999999999999888776 58999999876 5566667777777889999
Q ss_pred EeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCC
Q 000961 298 SHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTE 377 (1208)
Q Consensus 298 ~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 377 (1208)
|+|+++++++++.++-.... .. ..++.|.+||+.+++...+........ .+..++|+|++
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~---~~------------~~~~~l~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg 283 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDH---PR------------DLDVRVQLMDMDGGNVETLFDLFGGQG-----TMNSPNWSPDG 283 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSC---CS------------SEEEEEEEEETTSCSCEEEEEEEESTT-----TSCSCCBCTTS
T ss_pred ECCCCCEEEEEEcCCCCCcc---cc------------cCceEEEEEecCCCCceeeeccCCCCc-----ccccceECCCC
Confidence 99999998877643210000 00 013568899999887766555433222 78889999999
Q ss_pred CEEEEEEec
Q 000961 378 NAVLICSDV 386 (1208)
Q Consensus 378 ~~llv~~~~ 386 (1208)
+.+++++..
T Consensus 284 ~~l~~~~~~ 292 (297)
T 2ojh_A 284 DEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEC
T ss_pred CEEEEEEec
Confidence 998887663
No 150
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=5e-19 Score=203.21 Aligned_cols=273 Identities=7% Similarity=0.073 Sum_probs=193.2
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEecC-CeEEEEECC--CCe--EEEEecccccCEEEEEEEcCCCEEEEEEC-CCeEEEEE
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLHS-GVIQLWDYR--MGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGGD-DYKIKVWN 79 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~d-g~I~iWd~~--~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-Dg~I~vWd 79 (1208)
..|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+.+++|+|++++|++++. ++.|.+||
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3467789999999999999998876 999999987 554 344554444 7899999999998877664 88999999
Q ss_pred CC---CCeEEEEEccCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CeEEE----EEec-CCCCEEEEEEeeCCCE
Q 000961 80 YK---MHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS-DDQTIRIWNWQS-RTCIS----VLTG-HNHYVMCASFHPKEDL 149 (1208)
Q Consensus 80 ~~---~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s-~Dg~I~iwd~~s-~~~i~----~l~~-h~~~V~~l~~~p~~~~ 149 (1208)
+. +.+....+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ ++... .... ....+.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp EETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred CCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence 94 44455555543 4588999999999888887 899999999987 65432 2232 3457889999999997
Q ss_pred EEEEE-CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe---ccCCCeEEEEEcCCCCEEEEEe-C
Q 000961 150 VVSAS-LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE---GHDRGVNWAAFHPTLPLIVSGA-D 224 (1208)
Q Consensus 150 l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~g~~L~sgs-~ 224 (1208)
+++++ .++.|.+|++........ ... ...... .....+..++|+|++++|+++. .
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~-----~~~---------------~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~ 251 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIE-----CVQ---------------TLDMMPENFSDTRWAADIHITPDGRHLYACDRT 251 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCE-----EEE---------------EEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEeCCCCEEEEEEecCCCCcEE-----EEe---------------eccccCccccccCCccceEECCCCCEEEEEecC
Confidence 76665 789999999954111000 000 000000 1134567899999998887554 7
Q ss_pred CCcEEEEECC--CCceeEEEeecCcCCCeEEEEEccCCCEEEEEe-CCCcEEEE--eCCCCee--EEEeecCCCCEEEEE
Q 000961 225 DRQVKLWRMN--ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVW--DVTKRTG--VQTFRREHDRFWILA 297 (1208)
Q Consensus 225 dg~I~iwd~~--~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs-~dg~I~vw--d~~~~~~--~~~~~~~~~~i~~la 297 (1208)
++.|.+|++. ++....+..+..+.. +.+++|+|+|++|++++ .++.|.+| |..+++. +..+.. .....+++
T Consensus 252 ~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~ 329 (343)
T 1ri6_A 252 ASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVV 329 (343)
T ss_dssp TTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEE
T ss_pred CCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEE
Confidence 8999999998 333333445554444 88999999999888887 57999999 5446543 333332 23455666
Q ss_pred EeCCC
Q 000961 298 SHPEM 302 (1208)
Q Consensus 298 ~sp~~ 302 (1208)
+.|+.
T Consensus 330 ~~~~~ 334 (343)
T 1ri6_A 330 VNAHE 334 (343)
T ss_dssp EEEEC
T ss_pred EEccc
Confidence 66643
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=231.98 Aligned_cols=333 Identities=8% Similarity=0.001 Sum_probs=217.9
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEeccccc---CEEEEEEEcCCCEEEEEEC---------CCeEEEEECC
Q 000961 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDG---PVRGVHFHKSQPLFVSGGD---------DYKIKVWNYK 81 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~---~V~~l~fsp~~~~Lasgs~---------Dg~I~vWd~~ 81 (1208)
+++|+|+|.++++ +.||.|++||+.+++....+..|.. .|.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 7899999965554 4699999999999998877766654 4899999999999999876 7899999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCE-----------------EEEEE
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYV-----------------MCASF 143 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~~h~~~V-----------------~~l~~ 143 (1208)
+++.+... .....+..++|||||++|++++ ++.|++||+.+++..... .++...| .+++|
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 98763111 1135688999999999999986 789999999888765433 2333323 48999
Q ss_pred eeCCCEEEEEECCC----------------------------------eEEEEECCCCccccccCCCcceeecccccccc
Q 000961 144 HPKEDLVVSASLDQ----------------------------------TVRVWDIGALRKKTVSPADDILRLSQMNTDLF 189 (1208)
Q Consensus 144 ~p~~~~l~s~s~Dg----------------------------------~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1208)
+|||+.|++++.|. .|++||+.+.+.... +.+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~------~~~~------- 243 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP------QEVP------- 243 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC------EECC-------
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce------eEcc-------
Confidence 99999999988652 566777665332100 0000
Q ss_pred ccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC----cEEEEE----CCCCceeEEEee----cCcCCCeE-----
Q 000961 190 GGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR----QVKLWR----MNETKAWEVDTL----RGHMNNVS----- 252 (1208)
Q Consensus 190 ~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg----~I~iwd----~~~~~~~~~~~l----~~h~~~V~----- 252 (1208)
....+.+|...+..++|+||++++++....+ .|.+|| ..+++. ...+ .+|...+.
T Consensus 244 ------~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~ 315 (719)
T 1z68_A 244 ------VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC--PKTQEHIEESRTGWAGGFFVS 315 (719)
T ss_dssp ------CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC--CGGGEEEEECSSSCSSSSSCC
T ss_pred ------CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce--EEEEecccccCCceEccccCC
Confidence 0001235777889999999987777654332 488899 766654 2223 35666666
Q ss_pred EEEEccCCCEEEE--EeCCC--cEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEec
Q 000961 253 CVMFHAKQDIIVS--NSEDK--SIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVS 328 (1208)
Q Consensus 253 ~l~~sp~g~~l~s--gs~dg--~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~ 328 (1208)
.+.|+|+|+.++. +..+| .|.+||+.+++ ...+..+...+..+.++ +++.++.....+ . .
T Consensus 316 ~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~------~-~------- 379 (719)
T 1z68_A 316 TPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEF------E-E------- 379 (719)
T ss_dssp CCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCG------G-G-------
T ss_pred ccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecC------C-C-------
Confidence 8899999996554 44555 57777877665 44555555557777666 776666554320 0 0
Q ss_pred CCEEEEEeCCeEEEEEccC--Ccc-eeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecC-CCEEEEEEc
Q 000961 329 GDSLFYAKDRFLRYYEFST--QKD-TQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD-GGSYELYVI 396 (1208)
Q Consensus 329 ~~~L~~~~d~~i~v~d~~~--~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~-~g~v~l~~l 396 (1208)
.++..++|.+.. +.. ...+.....++ ...+..+.|+|+++.+++...+. ...+.+|++
T Consensus 380 -------~~~~~~l~~~~~~~g~~~~~~l~~~~~~~---~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 380 -------YPGRRNIYRISIGSYPPSKKCVTCHLRKE---RCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp -------CTTCBEEEEEECSSSSCCEEESSTTTTTT---TBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred -------CCceEEEEEEeCCCCCCCceeccCccCCC---CCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 134455665543 321 11111101112 12677899999999887654422 234555543
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=1.8e-19 Score=224.12 Aligned_cols=258 Identities=8% Similarity=0.056 Sum_probs=196.9
Q ss_pred CCCEEEEEEeCCCCEEEEEec-CCeEEEEECCCCeEEEEecccc-cCEEEEEEEcCCCEEEEEEC---CCeEEEEECCC-
Q 000961 9 SNRVKGLSFHSKRPWILASLH-SGVIQLWDYRMGTLIDRFDEHD-GPVRGVHFHKSQPLFVSGGD---DYKIKVWNYKM- 82 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~-dg~I~iWd~~~g~~i~~l~~h~-~~V~~l~fsp~~~~Lasgs~---Dg~I~vWd~~~- 82 (1208)
..+|.+++|+|||++||+++. +|++.||++.+++.. .+..|. ..|.+++|||+ +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 567999999999999999877 999999998666654 454555 68999999999 77777765 45455654432
Q ss_pred --CeEEEEEccCCCCEEEEEEcCCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC---
Q 000961 83 --HRCLFTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD--- 156 (1208)
Q Consensus 83 --~~~~~~l~~h~~~I~~v~fs~d~~~-l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D--- 156 (1208)
+... .+..+ ..+...+|+|+++. +++++.++.+.+||+.+++.......+. .+++|+|+|++|++++.+
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence 2222 44332 23456788888863 3344444556699999988766555433 789999999999988877
Q ss_pred -CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEC
Q 000961 157 -QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR--QVKLWRM 233 (1208)
Q Consensus 157 -g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg--~I~iwd~ 233 (1208)
+.|++||+.+++.. .+..|...+..++|+|||+.|+++..++ .|++||+
T Consensus 174 ~~~i~~~d~~~g~~~----------------------------~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~ 225 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR----------------------------VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDP 225 (582)
T ss_dssp EEEEEEEETTTCCCE----------------------------EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred CeEEEEEcCCCCCce----------------------------EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence 78999998775432 4556778889999999999999888888 8999999
Q ss_pred CCCceeEEEeecCcCCCeEEEE--------EccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEE
Q 000961 234 NETKAWEVDTLRGHMNNVSCVM--------FHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLL 305 (1208)
Q Consensus 234 ~~~~~~~~~~l~~h~~~V~~l~--------~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~l 305 (1208)
.+++. . .+.+|...+..+. |+|||.++++++.+|.+++|++ ++... ...+.+.+++|+ +++++
T Consensus 226 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 226 RDGSV--E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLV 296 (582)
T ss_dssp TTCCE--E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEE
T ss_pred CCCcE--E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEE
Confidence 98885 3 6677777777777 9999999999999999999999 65543 344678899999 88888
Q ss_pred EEEEC
Q 000961 306 AAGHD 310 (1208)
Q Consensus 306 a~g~~ 310 (1208)
++++.
T Consensus 297 ~~~s~ 301 (582)
T 3o4h_A 297 TSHTS 301 (582)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 77654
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=4.2e-18 Score=196.64 Aligned_cols=262 Identities=15% Similarity=0.109 Sum_probs=182.4
Q ss_pred EEEEEe----cCCeEEEEEC--CCCeEEE-EecccccCEEEEEEEcCCCEEEEEEC---CCeEEEEECCCCe--EEEEEc
Q 000961 23 WILASL----HSGVIQLWDY--RMGTLID-RFDEHDGPVRGVHFHKSQPLFVSGGD---DYKIKVWNYKMHR--CLFTLL 90 (1208)
Q Consensus 23 ~Lasg~----~dg~I~iWd~--~~g~~i~-~l~~h~~~V~~l~fsp~~~~Lasgs~---Dg~I~vWd~~~~~--~~~~l~ 90 (1208)
.+++|+ .++.|.+|++ .+++... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 355553 2456777765 4566543 3335667788999999999 554443 6899999998765 445555
Q ss_pred cCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEECC-CC--eEEEEEec---------CCCCEEEEEEeeCCCEEEEEECCC
Q 000961 91 GHLDYIRTVQFHHEYPWIVSAS-DDQTIRIWNWQ-SR--TCISVLTG---------HNHYVMCASFHPKEDLVVSASLDQ 157 (1208)
Q Consensus 91 ~h~~~I~~v~fs~d~~~l~s~s-~Dg~I~iwd~~-s~--~~i~~l~~---------h~~~V~~l~~~p~~~~l~s~s~Dg 157 (1208)
.+...+..++|+|++++|++++ .++.|.+|++. ++ +.+..+.. +...+.+++|+|+++++++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 6778889999999999999888 67999999996 33 33333322 123488999999999666666788
Q ss_pred eEEEEECCC-CccccccCCCcceeeccccccccccccceEEEEEec-cCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 000961 158 TVRVWDIGA-LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG-HDRGVNWAAFHPTLPLIVS-GADDRQVKLWRMN 234 (1208)
Q Consensus 158 ~V~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~~L~s-gs~dg~I~iwd~~ 234 (1208)
.|++|++.. ++... ...... .......++|+|+|+++++ +..++.|.+|++.
T Consensus 163 ~v~~~~~~~~g~~~~-------------------------~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 217 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSE-------------------------QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD 217 (347)
T ss_dssp EEEEEEECTTSCEEE-------------------------EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCcEEE-------------------------eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 999999873 21110 001111 2335778999999996665 4568899999987
Q ss_pred C--CceeEEEeecCcC------CCeEEEEEccCCCEE-EEEeCCCcEEEEeCCC---CeeEEEeecCCCCEEEEEEeCCC
Q 000961 235 E--TKAWEVDTLRGHM------NNVSCVMFHAKQDII-VSNSEDKSIRVWDVTK---RTGVQTFRREHDRFWILASHPEM 302 (1208)
Q Consensus 235 ~--~~~~~~~~l~~h~------~~V~~l~~sp~g~~l-~sgs~dg~I~vwd~~~---~~~~~~~~~~~~~i~~la~sp~~ 302 (1208)
. ++...+..+.... ..+..++|+|+|++| +++..++.|.+|++.. .+.+..+..+...+..++|+|++
T Consensus 218 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg 297 (347)
T 3hfq_A 218 TQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE 297 (347)
T ss_dssp TTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS
T ss_pred CCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC
Confidence 4 4432233333322 358899999999987 5556689999999872 24555565556668899999999
Q ss_pred CEEEEEEC
Q 000961 303 NLLAAGHD 310 (1208)
Q Consensus 303 ~~la~g~~ 310 (1208)
++|+++..
T Consensus 298 ~~l~v~~~ 305 (347)
T 3hfq_A 298 AFVVVVNQ 305 (347)
T ss_dssp SEEEEEET
T ss_pred CEEEEEEc
Confidence 98887764
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=3.2e-18 Score=218.83 Aligned_cols=379 Identities=7% Similarity=-0.017 Sum_probs=241.3
Q ss_pred cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCC-----EEEEEEcCCCCEEEEEECC---------CcE
Q 000961 52 GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDY-----IRTVQFHHEYPWIVSASDD---------QTI 117 (1208)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~-----I~~v~fs~d~~~l~s~s~D---------g~I 117 (1208)
....++.|+|++.+++++ |++|++||+.++++...+.+|... ...+.|||||++|++++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999988886 899999999999988888877643 2347899999999998876 566
Q ss_pred EEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEE
Q 000961 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVK 197 (1208)
Q Consensus 118 ~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1208)
.+||+.+++.. .+..|...+...+|+|||+.|+.++ ++.|++|++.++.......... ..
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~---------------~~--- 154 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGK---------------ED--- 154 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCB---------------TT---
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCC---------------cc---
Confidence 79999999865 4666788899999999999999885 7899999998765432211100 00
Q ss_pred EEEeccC---------CCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEe
Q 000961 198 YVLEGHD---------RGVNWAAFHPTLPLIVSGADDR-QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (1208)
Q Consensus 198 ~~~~~h~---------~~V~~l~~sp~g~~L~sgs~dg-~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs 267 (1208)
..+.++. +....+.|||||+.|+.++.|. .+.+|++..... ...+...+..+.+.+.|.. .
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-----~~~~~~~~~~~~yp~~G~~----~ 225 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-----ESLQYPKTVRVPYPKAGAV----N 225 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-----TTCSSCEEEEEECCBTTSC----C
T ss_pred ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-----CCCCCCcceeecCCCCcCc----C
Confidence 0112222 2234589999999999887554 488887542211 0024455667777776643 1
Q ss_pred CCCcEEEEeCCC---Ce--eEEEeec------CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEe
Q 000961 268 EDKSIRVWDVTK---RT--GVQTFRR------EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAK 336 (1208)
Q Consensus 268 ~dg~I~vwd~~~---~~--~~~~~~~------~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~ 336 (1208)
....|++||+.+ +. ....+.. +...+..++|+|||+.++.....+- .
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~----------------------~ 283 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ----------------------N 283 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST----------------------T
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC----------------------C
Confidence 223689999998 73 2223332 5566889999999997665432110 2
Q ss_pred CCeEEEEEccCCc----ceeeEeecCCCCCCCCcC---CeEEEEcCCCCEEEEEEecCCC--EEEEEEccCCCCCCCccc
Q 000961 337 DRFLRYYEFSTQK----DTQVIPIRRPGSTSLNQS---PRTLSYSPTENAVLICSDVDGG--SYELYVIPKDSIGRGDSV 407 (1208)
Q Consensus 337 d~~i~v~d~~~~~----~~~~~~~~~~~~~~~~~~---i~~l~~spdg~~llv~~~~~~g--~v~l~~l~~~~~~~~~~~ 407 (1208)
+..|.+||+.+++ ......+-..++.. +.. ...++|+|||+.+++.....+| .+.+|+..+.. .. .
T Consensus 284 ~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~-~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---~~-~ 358 (740)
T 4a5s_A 284 YSVMDICDYDESSGRWNCLVARQHIEMSTTG-WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD---CT-F 358 (740)
T ss_dssp EEEEEEEEEETTTTEEEECGGGCEEEECSSS-CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS---CE-E
T ss_pred EEEEEEEECCCCccccceeEEEEeeeccCCc-eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc---eE-e
Confidence 3468899999887 22222110011111 222 3478999999988733333444 45555555432 22 2
Q ss_pred ccccCCceEEEEEEeCCcEEEE-EcC----C--CEEEEEecCCceee-eecCC-----cceEEEEEeCCccEEEEe----
Q 000961 408 QDAKKGLGGSAIFIARNRFAVL-DKS----S--NQVLVKNLKNEVVK-KSILP-----IAADAIFYAGTGNLLCRA---- 470 (1208)
Q Consensus 408 ~~~~~~~i~~~~fs~d~~~l~~-~~~----d--g~I~Iwdl~~~~~~-~l~~~-----~~v~~i~~s~dg~~Las~---- 470 (1208)
+......+..+.. +|++.++. +.. . ..|...++.+.... .+... .....+.|||+|+.++..
T Consensus 359 lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~ 437 (740)
T 4a5s_A 359 ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGP 437 (740)
T ss_dssp SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSB
T ss_pred cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCC
Confidence 2233334555433 44655444 433 1 24555666644332 44422 367899999999987552
Q ss_pred -CCeEEEEEcCCCeEEEEEe
Q 000961 471 -EDRVVIFDLQQRLVLGDLQ 489 (1208)
Q Consensus 471 -dg~v~lwdl~~~~~l~~~~ 489 (1208)
...+.+++..+++.+..+.
T Consensus 438 ~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 438 GLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp SSCEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEec
Confidence 2478889988887665554
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.1e-18 Score=223.11 Aligned_cols=364 Identities=9% Similarity=0.036 Sum_probs=239.8
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccC-----EEEEEEEcCCCEEEEEECC---------Ce
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGP-----VRGVHFHKSQPLFVSGGDD---------YK 74 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~-----V~~l~fsp~~~~Lasgs~D---------g~ 74 (1208)
.....+++|+|||.+++++ +|.|++||+.+++....+..|... ...++|||||++|++++.+ +.
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3446689999999988886 999999999999988878777643 2448899999999998876 56
Q ss_pred EEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCE---------------
Q 000961 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYV--------------- 138 (1208)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~~h~~~V--------------- 138 (1208)
+.+||+.+++.. .+..|...+...+|||||++|+.++ ++.|++|+..+++..+.. .++...+
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 779999998865 4677888999999999999999885 689999999888755432 2333323
Q ss_pred --EEEEEeeCCCEEEEEECCCe-EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 139 --MCASFHPKEDLVVSASLDQT-VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 139 --~~l~~~p~~~~l~s~s~Dg~-V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
..+.|+|||+.|+.++.|.+ +.+|++...... ..+...+..+.+.+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~------------------------------~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE------------------------------SLQYPKTVRVPYPKA 221 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST------------------------------TCSSCEEEEEECCBT
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCC------------------------------CCCCCcceeecCCCC
Confidence 34899999999998876554 888876321100 013344555666665
Q ss_pred CCEEEEEeCCCcEEEEECCC---CceeEEEeec------CcCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCe-
Q 000961 216 LPLIVSGADDRQVKLWRMNE---TKAWEVDTLR------GHMNNVSCVMFHAKQDIIVSNSE----DKSIRVWDVTKRT- 281 (1208)
Q Consensus 216 g~~L~sgs~dg~I~iwd~~~---~~~~~~~~l~------~h~~~V~~l~~sp~g~~l~sgs~----dg~I~vwd~~~~~- 281 (1208)
|.. .....|++||+.+ ++......+. +|...+..++|+|||+.++.... +..|++||+.+++
T Consensus 222 G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~ 297 (740)
T 4a5s_A 222 GAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG 297 (740)
T ss_dssp TSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred cCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence 532 1123689999998 7311122333 37788999999999997766543 3369999998876
Q ss_pred ---eE--EEe--ecCCCCEE-----EEEEeCCCCEEE-EEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCC
Q 000961 282 ---GV--QTF--RREHDRFW-----ILASHPEMNLLA-AGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ 348 (1208)
Q Consensus 282 ---~~--~~~--~~~~~~i~-----~la~sp~~~~la-~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~ 348 (1208)
+. ..+ ..+...+. ..+|+|||+.++ ..++.. ....|.+|+..++
T Consensus 298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~-----------------------G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE-----------------------GYRHICYFQIDKK 354 (740)
T ss_dssp EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT-----------------------SCEEEEEEETTCS
T ss_pred ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCC-----------------------CceEEEEEECCCC
Confidence 21 111 22333332 678899988766 554321 1356788888877
Q ss_pred cceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEec---CCCEEEEEEccCCCCCC--Ccc-cccccCCceEEEEEEe
Q 000961 349 KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV---DGGSYELYVIPKDSIGR--GDS-VQDAKKGLGGSAIFIA 422 (1208)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~---~~g~v~l~~l~~~~~~~--~~~-~~~~~~~~i~~~~fs~ 422 (1208)
+...+.. +. + .+..+. .+|++.++..+.. ..+...||.++...... ++. .+.+.......+.||+
T Consensus 355 ~~~~lT~----g~---~-~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~ 425 (740)
T 4a5s_A 355 DCTFITK----GT---W-EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSK 425 (740)
T ss_dssp SCEESCC----SS---S-CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECT
T ss_pred ceEeccc----CC---E-EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECC
Confidence 6544321 11 1 444433 3557777766553 24556677665432211 110 1112335677899999
Q ss_pred CCcEEEEEcCC---CEEEEEecC
Q 000961 423 RNRFAVLDKSS---NQVLVKNLK 442 (1208)
Q Consensus 423 d~~~l~~~~~d---g~I~Iwdl~ 442 (1208)
++++++..... ..+.+++..
T Consensus 426 dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 426 EAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp TSSEEEEEECSBSSCEEEEEETT
T ss_pred CCCEEEEEeCCCCCCEEEEEECC
Confidence 99877665422 256666665
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=7.6e-19 Score=224.30 Aligned_cols=333 Identities=10% Similarity=0.035 Sum_probs=223.2
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC---CEEEEEEeeCCCEEEEEEC---------CCeEEEEECC
Q 000961 98 TVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNH---YVMCASFHPKEDLVVSASL---------DQTVRVWDIG 165 (1208)
Q Consensus 98 ~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~---~V~~l~~~p~~~~l~s~s~---------Dg~V~vwdl~ 165 (1208)
++.|+|++. ++..+.|++|++||+.+++....+.+|.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 689999995 44455799999999999998877765543 4889999999999999876 7899999998
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~ 245 (1208)
+++..... . ....+..++|||||+.|+++. ++.|++|++.+++...+ +..
T Consensus 99 ~g~~~~~~-------------------------~---l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l-~~~ 148 (719)
T 1z68_A 99 NGEFVRGN-------------------------E---LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI-TFN 148 (719)
T ss_dssp TTEECCSS-------------------------C---CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC-CCC
T ss_pred CCccccce-------------------------e---cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE-ecC
Confidence 76531100 0 113577899999999999986 78999999988775221 112
Q ss_pred CcCCCe-----------------EEEEEccCCCEEEEEeCCC----------------------------------cEEE
Q 000961 246 GHMNNV-----------------SCVMFHAKQDIIVSNSEDK----------------------------------SIRV 274 (1208)
Q Consensus 246 ~h~~~V-----------------~~l~~sp~g~~l~sgs~dg----------------------------------~I~v 274 (1208)
++...| .+++|||||++|++++.|. .|++
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 333222 4899999999999987652 7889
Q ss_pred EeCCCCeeE--EE------eecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEE--
Q 000961 275 WDVTKRTGV--QT------FRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYE-- 344 (1208)
Q Consensus 275 wd~~~~~~~--~~------~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d-- 344 (1208)
||+.+++.. .. +..+...+..++|+||++++++..+.+- ....|.+||
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~----------------------~~~~l~~~d~~ 286 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ----------------------NVSVLSICDFR 286 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESST----------------------TEEEEEEEEEC
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecccc----------------------CeEEEEEEccc
Confidence 999887642 11 2245667899999999877666442110 123577888
Q ss_pred --ccCCcceeeEeecCCCCCCCCcCCe-----EEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEE
Q 000961 345 --FSTQKDTQVIPIRRPGSTSLNQSPR-----TLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGS 417 (1208)
Q Consensus 345 --~~~~~~~~~~~~~~~~~~~~~~~i~-----~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~ 417 (1208)
..+++...+......++ ...+. .+.|+|||+.+++.....++...||.++... +.. ..+..+...+..
T Consensus 287 ~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~-~~~-~~lt~~~~~v~~ 361 (719)
T 1z68_A 287 EDWQTWDCPKTQEHIEESR---TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV-ENA-IQITSGKWEAIN 361 (719)
T ss_dssp SSSSSEECCGGGEEEEECS---SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS-TTC-EECSCSSSCEEE
T ss_pred CCCCCCceEEEEecccccC---CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC-Cce-EecccCceEEEE
Confidence 76766544432000111 11343 7899999998777555455655555544322 112 134444555777
Q ss_pred EEEEeCCcEEEEEcCC-----CEEEEEecC--Cc--eeeeecC----C-cceEEEEEeCCccEEEEe-----CCeEEEEE
Q 000961 418 AIFIARNRFAVLDKSS-----NQVLVKNLK--NE--VVKKSIL----P-IAADAIFYAGTGNLLCRA-----EDRVVIFD 478 (1208)
Q Consensus 418 ~~fs~d~~~l~~~~~d-----g~I~Iwdl~--~~--~~~~l~~----~-~~v~~i~~s~dg~~Las~-----dg~v~lwd 478 (1208)
+.++ +++.++..+.+ +...+|.+. +. ....+.. + ..+..+.|+|+|+.++.. ...+.+||
T Consensus 362 ~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 362 IFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 7777 77666655544 778888775 22 2344432 2 267889999998887642 24788999
Q ss_pred cCCCeEEEEEe
Q 000961 479 LQQRLVLGDLQ 489 (1208)
Q Consensus 479 l~~~~~l~~~~ 489 (1208)
+.+++.+..+.
T Consensus 441 ~~~g~~~~~~~ 451 (719)
T 1z68_A 441 GRTDQEIKILE 451 (719)
T ss_dssp SSSCCEEEEEE
T ss_pred CCCCCEEEEee
Confidence 88887554443
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=1e-17 Score=193.41 Aligned_cols=252 Identities=11% Similarity=0.074 Sum_probs=181.7
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEec---CCeEEEEECCCCe--EEEEecccccCEEEEEEEcCCCEEEEEE-CCCeEEEEE
Q 000961 6 ETKSNRVKGLSFHSKRPWILASLH---SGVIQLWDYRMGT--LIDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVWN 79 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~~---dg~I~iWd~~~g~--~i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~vWd 79 (1208)
..+...+..++|+|||+ |++++. ++.|.+||+.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34557788899999999 655554 5899999997775 4455556788899999999999888888 789999999
Q ss_pred CC-CC--eEEEEEcc---------CCCCEEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEE--EEecC-CCCEEEEEE
Q 000961 80 YK-MH--RCLFTLLG---------HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ-SRTCIS--VLTGH-NHYVMCASF 143 (1208)
Q Consensus 80 ~~-~~--~~~~~l~~---------h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~-s~~~i~--~l~~h-~~~V~~l~~ 143 (1208)
+. ++ +.+..+.. +...+.+++|+|+++.+++...++.|++|++. +++... .+..+ ...+..++|
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 96 22 33333321 12358899999999966666668899999998 554332 22322 336788999
Q ss_pred eeCCCEEEEE-ECCCeEEEEECCC--CccccccCCCcceeeccccccccccccceEEEEEecc------CCCeEEEEEcC
Q 000961 144 HPKEDLVVSA-SLDQTVRVWDIGA--LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH------DRGVNWAAFHP 214 (1208)
Q Consensus 144 ~p~~~~l~s~-s~Dg~V~vwdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~V~~l~~sp 214 (1208)
+|+|++++++ ..++.|.+|++.. ++... ....... ...+..++|+|
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-------------------------~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQ-------------------------LGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEE-------------------------EEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEE-------------------------eeeeeecCCCCCCCCcceeEEECC
Confidence 9999966664 5688999999864 21100 0111111 13578899999
Q ss_pred CCCEE-EEEeCCCcEEEEECCCC-ceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-CcEEEE--eCCCCeeE
Q 000961 215 TLPLI-VSGADDRQVKLWRMNET-KAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-KSIRVW--DVTKRTGV 283 (1208)
Q Consensus 215 ~g~~L-~sgs~dg~I~iwd~~~~-~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d-g~I~vw--d~~~~~~~ 283 (1208)
+|++| ++...++.|.+|++... ....+..+..+...+.+++|+|+|++|++++.+ +.|.+| |..+++..
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 99977 45566899999999733 333355666667778999999999998888765 899999 55566554
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=1.8e-18 Score=197.99 Aligned_cols=244 Identities=7% Similarity=-0.024 Sum_probs=191.3
Q ss_pred CEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeEEEEecc-c----ccCEEEEEEEcCCCEEEEEE------------CC
Q 000961 11 RVKGLSFHSKRPWILAS-LHSGVIQLWDYRMGTLIDRFDE-H----DGPVRGVHFHKSQPLFVSGG------------DD 72 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg-~~dg~I~iWd~~~g~~i~~l~~-h----~~~V~~l~fsp~~~~Lasgs------------~D 72 (1208)
.+.+++|+|+|++++++ ..++.|.+||..+++.+..+.. + ...+.+++|+|+++++++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 58899999999877554 4578999999999998877653 2 23678899999999988886 57
Q ss_pred CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEE
Q 000961 73 YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVS 152 (1208)
Q Consensus 73 g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s 152 (1208)
+.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+||+.+++.+..+..+... ..+.|+|++..++.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEee
Confidence 9999999999988877764 4567889999999988887 689999999999988877654311 12378999886655
Q ss_pred EECCC------------------------eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 153 ASLDQ------------------------TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 153 ~s~Dg------------------------~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
.+..+ .|.+||+.+.+.. ...+..+...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--------------------------~~~~~~~~~~~~ 244 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--------------------------MREVRIMDVFYF 244 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--------------------------EEEEEECSSCEE
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--------------------------EeecCCCCCcee
Confidence 54332 3577777664321 223455667788
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec
Q 000961 209 WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 209 ~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 288 (1208)
+++|+|++++++++ ++.|.+||+.+++. +..+.. ...+.+++|+|+|+++++++.++.|++||+.+++.+..+..
T Consensus 245 ~~~~s~dg~~l~~~--~~~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 245 STAVNPAKTRAFGA--YNVLESFDLEKNAS--IKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEECTTSSEEEEE--ESEEEEEETTTTEE--EEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred eEEECCCCCEEEEe--CCeEEEEECCCCcC--cceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99999999999888 79999999998875 334432 34678999999999999999999999999999988887764
Q ss_pred C
Q 000961 289 E 289 (1208)
Q Consensus 289 ~ 289 (1208)
+
T Consensus 320 ~ 320 (337)
T 1pby_B 320 P 320 (337)
T ss_dssp G
T ss_pred C
Confidence 4
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=5.1e-18 Score=195.44 Aligned_cols=268 Identities=7% Similarity=0.032 Sum_probs=194.3
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccc-cCEEEEEEEcCCCEEE-EEECCCeEEEEECCCCeEEEEEc
Q 000961 13 KGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHD-GPVRGVHFHKSQPLFV-SGGDDYKIKVWNYKMHRCLFTLL 90 (1208)
Q Consensus 13 ~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~-~~V~~l~fsp~~~~La-sgs~Dg~I~vWd~~~~~~~~~l~ 90 (1208)
+++++++++.++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788999999999999999999999999988886543 2578999999998655 55578999999999999887776
Q ss_pred cCC------CCEEEEEEcCCCCEEEEEECC------------CcEEEEECCCCe---EEEEEecCCCCEEEEEEeeCCCE
Q 000961 91 GHL------DYIRTVQFHHEYPWIVSASDD------------QTIRIWNWQSRT---CISVLTGHNHYVMCASFHPKEDL 149 (1208)
Q Consensus 91 ~h~------~~I~~v~fs~d~~~l~s~s~D------------g~I~iwd~~s~~---~i~~l~~h~~~V~~l~~~p~~~~ 149 (1208)
.+. ..+..++|+|+++++++++.+ +.|.+||+.+++ .+.... +...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 332 237889999999999998865 899999998743 334444 334688999999999
Q ss_pred EEEEECCCeEEEEECCCCccccccCCCc---c-----------------------eeecccc-----------c-cc--c
Q 000961 150 VVSASLDQTVRVWDIGALRKKTVSPADD---I-----------------------LRLSQMN-----------T-DL--F 189 (1208)
Q Consensus 150 l~s~s~Dg~V~vwdl~~~~~~~~~~~~~---~-----------------------~~~~~~~-----------~-~~--~ 189 (1208)
+++++ +.|.+||..+.+.....+... . ..+.... . .. .
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 66554 449999998776543322110 0 0000000 0 00 0
Q ss_pred c-cccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEe
Q 000961 190 G-GVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (1208)
Q Consensus 190 ~-~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs 267 (1208)
. ............+...+..++|+| ++++++++ ++.|.+||+.+++. +..+. ....+.+++|+|++++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL--IKAAN-LDHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE--EEEEE-CSSCCCEEEECSSSSCEEEES
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE--EEEEc-CCCCccceEECCCCCEEEEec
Confidence 0 001111222333555778899999 99999888 88999999999875 33333 234577999999999998888
Q ss_pred CCCcEEEEeCCCCeeEEEeecC
Q 000961 268 EDKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 268 ~dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
.++.|.+||..+++.+..+...
T Consensus 314 ~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 314 TFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp BSSEEEEEETTTTEEEEEEECS
T ss_pred CCCeEEEEeccccceeeeeecC
Confidence 8999999999999988877654
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=5.8e-18 Score=198.57 Aligned_cols=278 Identities=8% Similarity=0.030 Sum_probs=201.9
Q ss_pred eEeecCCCCEEE-----EEEeCCCCEEEEEec-CC--eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCe
Q 000961 3 TKFETKSNRVKG-----LSFHSKRPWILASLH-SG--VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK 74 (1208)
Q Consensus 3 ~~l~~h~~~V~~-----lafspdg~~Lasg~~-dg--~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~ 74 (1208)
+.+..|...+.. .+|||||++|+.++. +| .|.+||..+++......+|...+.++.|+|+++.|+.++.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence 456667766666 889999999999887 66 4888999999888777777777667889999999999999999
Q ss_pred EEEEECCCCeEEEEEccCCCCEEEEE--EcCCCCEEEEEE----------------------CCCcEEEEECCCCeEEEE
Q 000961 75 IKVWNYKMHRCLFTLLGHLDYIRTVQ--FHHEYPWIVSAS----------------------DDQTIRIWNWQSRTCISV 130 (1208)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~v~--fs~d~~~l~s~s----------------------~Dg~I~iwd~~s~~~i~~ 130 (1208)
|++||+.+++.......+...+.... +++++.+++... .+..|.+||+.+++...
T Consensus 104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~- 182 (388)
T 3pe7_A 104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV- 182 (388)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-
T ss_pred EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-
Confidence 99999999987776666666565444 489999887432 34689999999887544
Q ss_pred EecCCCCEEEEEEee-CCCEEEEEECC------CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc
Q 000961 131 LTGHNHYVMCASFHP-KEDLVVSASLD------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (1208)
Q Consensus 131 l~~h~~~V~~l~~~p-~~~~l~s~s~D------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 203 (1208)
+..+...+..+.|+| +|+.|+.++.+ ..|.++|..+..... +..+
T Consensus 183 l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----------------------------l~~~ 234 (388)
T 3pe7_A 183 ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK----------------------------VKTH 234 (388)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE----------------------------SCCC
T ss_pred eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE----------------------------eeeC
Confidence 445667899999999 99988887764 367788876543221 1122
Q ss_pred C--CCeEEEEEcCCCCEEEEEeC-CC----cEEEEECCCCceeEEEeecCcCCC---eEEEEEccCCCEEEEE-------
Q 000961 204 D--RGVNWAAFHPTLPLIVSGAD-DR----QVKLWRMNETKAWEVDTLRGHMNN---VSCVMFHAKQDIIVSN------- 266 (1208)
Q Consensus 204 ~--~~V~~l~~sp~g~~L~sgs~-dg----~I~iwd~~~~~~~~~~~l~~h~~~---V~~l~~sp~g~~l~sg------- 266 (1208)
. ..+...+|+|+|+.|+..+. ++ .|.+||+.+++...+....++... ...+.|+|+|+.|+..
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 314 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY 314 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----------
T ss_pred CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc
Confidence 2 24677899999997766543 22 399999999885444444432111 1223799999988754
Q ss_pred --eCCCcEEEEeCCCCeeEEEeecCCC-----------CEEEEEEeCCCCEEEEEEC
Q 000961 267 --SEDKSIRVWDVTKRTGVQTFRREHD-----------RFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 267 --s~dg~I~vwd~~~~~~~~~~~~~~~-----------~i~~la~sp~~~~la~g~~ 310 (1208)
..+..|++||+.+++.. .+..+.. .+..++|+|||+.|+..++
T Consensus 315 ~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 315 KIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp --CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 44668999999887654 3444444 4678899999998887764
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=7.1e-18 Score=197.77 Aligned_cols=314 Identities=12% Similarity=0.078 Sum_probs=211.7
Q ss_pred EEEECCCCeEEEEecccccCEEE-----EEEEcCCCEEEEEEC-CC--eEEEEECCCCeEEEEEccCCCCEEEEEEcCCC
Q 000961 34 QLWDYRMGTLIDRFDEHDGPVRG-----VHFHKSQPLFVSGGD-DY--KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY 105 (1208)
Q Consensus 34 ~iWd~~~g~~i~~l~~h~~~V~~-----l~fsp~~~~Lasgs~-Dg--~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~ 105 (1208)
..+|..+|..+..+..|...... .+|||||++|+.++. ++ .|.+||+.+++......++...+..+.|+||+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34677889889999888877776 889999999999887 66 58899999988877666666666678899999
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEE--eeCCCEEEEEE----------------------CCCeEEE
Q 000961 106 PWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASF--HPKEDLVVSAS----------------------LDQTVRV 161 (1208)
Q Consensus 106 ~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~--~p~~~~l~s~s----------------------~Dg~V~v 161 (1208)
++|+.++.++.|++||+.+++.......+...+....| +|++..++... .+..|.+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 99999999999999999999888777777766655544 78888887432 3467888
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEECC
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADD------RQVKLWRMN 234 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~d------g~I~iwd~~ 234 (1208)
||+.+++.. .+..+...+..++|+| +|+.|+....+ ..|.+++..
T Consensus 173 ~d~~~g~~~----------------------------~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (388)
T 3pe7_A 173 VDLKTGEST----------------------------VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED 224 (388)
T ss_dssp EETTTCCEE----------------------------EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred EECCCCceE----------------------------EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 888764422 2334566789999999 99999887753 378888887
Q ss_pred CCceeEEEeecCcC--CCeEEEEEccCCCEEEEEeC-CC----cEEEEeCCCCeeEEEeecCC--CC---EEEEEEeCCC
Q 000961 235 ETKAWEVDTLRGHM--NNVSCVMFHAKQDIIVSNSE-DK----SIRVWDVTKRTGVQTFRREH--DR---FWILASHPEM 302 (1208)
Q Consensus 235 ~~~~~~~~~l~~h~--~~V~~l~~sp~g~~l~sgs~-dg----~I~vwd~~~~~~~~~~~~~~--~~---i~~la~sp~~ 302 (1208)
+... ..+..+. ..+..+.|+|+|+.|+..+. ++ .|++||+.+++......... .. ...+.|+|+|
T Consensus 225 ~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg 301 (388)
T 3pe7_A 225 GTNM---RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG 301 (388)
T ss_dssp SCCC---EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred CCce---EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence 7653 3343343 35778999999997765443 22 39999999887533222111 00 0112466666
Q ss_pred CEEEEEECCCeeeEeeCCCcceEEecCCEEEE-EeCCeEEEEEccCCcceeeEeecCCCC---CCCCcCCeEEEEcCCCC
Q 000961 303 NLLAAGHDSGMIVFKLERERPAFAVSGDSLFY-AKDRFLRYYEFSTQKDTQVIPIRRPGS---TSLNQSPRTLSYSPTEN 378 (1208)
Q Consensus 303 ~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~i~~l~~spdg~ 378 (1208)
+.++....++ ..+. ..+..|.+||+.+++...+......-. ......+.+++|+|||+
T Consensus 302 ~~l~~~~~~~------------------~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~ 363 (388)
T 3pe7_A 302 SDAPVDVQDD------------------SGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDK 363 (388)
T ss_dssp CCC------------------------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred CcceeEeeec------------------cccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCC
Confidence 6555432100 0000 035678899998876544332211000 00000367789999999
Q ss_pred EEEEEEecCCCEEEEEEcc
Q 000961 379 AVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 379 ~llv~~~~~~g~v~l~~l~ 397 (1208)
.+++.+. .++...||.++
T Consensus 364 ~l~~~s~-~~g~~~l~~~~ 381 (388)
T 3pe7_A 364 QILFTSD-VHGKPALYLAT 381 (388)
T ss_dssp EEEEEEC-TTSSCEEEEEE
T ss_pred EEEEEec-CCCceeEEEEE
Confidence 9887765 45666777665
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=3.5e-16 Score=181.63 Aligned_cols=312 Identities=10% Similarity=0.102 Sum_probs=199.5
Q ss_pred CCEEEEEE----CCCeEEEEEC--CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC----CcEEEEECCC--CeE--E
Q 000961 63 QPLFVSGG----DDYKIKVWNY--KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD----QTIRIWNWQS--RTC--I 128 (1208)
Q Consensus 63 ~~~Lasgs----~Dg~I~vWd~--~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D----g~I~iwd~~s--~~~--i 128 (1208)
..++.+|+ .++.|.+|.+ .+++.......+...+..++|+|++++|++++.+ +.|.+|++.. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 4578999976 4554433222267778889999999999999886 7999998865 443 3
Q ss_pred EEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCe
Q 000961 129 SVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV 207 (1208)
Q Consensus 129 ~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 207 (1208)
.....+...+..+++ +++++++++ .++.|.+|++........... ..... .. +.. ....+...+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~--~~~~~--g~---~~~------~~~~~~~~~ 157 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD--VIEFK--GS---GPD------KERQTMPHL 157 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE--EEECC--CC---CSC------TTTCSSCCE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce--eEEcc--CC---CCC------ccccCCCcc
Confidence 444445566777887 788777776 588999999975332111000 00000 00 000 001123446
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCCCce------eE-----EEeecCcCCCeEEEEEccCCCEEEEEe-CCCcEEE
Q 000961 208 NWAAFHPTLPLIVSGA-DDRQVKLWRMNETKA------WE-----VDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRV 274 (1208)
Q Consensus 208 ~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~------~~-----~~~l~~h~~~V~~l~~sp~g~~l~sgs-~dg~I~v 274 (1208)
.+++|+|+|+++++++ .++.|.+|++..... .. ......+...+.+++|+|+|+++++++ .++.|.+
T Consensus 158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 237 (361)
T 3scy_A 158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA 237 (361)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE
Confidence 8899999999776655 488999998875431 11 112233455678999999999887777 6899999
Q ss_pred EeCCCCee--EEEeec---CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEcc--C
Q 000961 275 WDVTKRTG--VQTFRR---EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS--T 347 (1208)
Q Consensus 275 wd~~~~~~--~~~~~~---~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~--~ 347 (1208)
|++.++.. +..+.. +......++|+|+|++++++...+ ++.+.+|++. +
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~------------------------~~~i~v~~~~~~~ 293 (361)
T 3scy_A 238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK------------------------ADGVAIFKVDETN 293 (361)
T ss_dssp EEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS------------------------SCEEEEEEECTTT
T ss_pred EEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC------------------------CCEEEEEEEcCCC
Confidence 99987754 233322 224467999999999887665320 4567788875 3
Q ss_pred CcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccc-cccCCceEEEEEE
Q 000961 348 QKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQ-DAKKGLGGSAIFI 421 (1208)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~-~~~~~~i~~~~fs 421 (1208)
++...+..+.. +. .+..++|+|||++++++.. .++.+.+|.+.... +.+.... ..+...+.++.|.
T Consensus 294 g~~~~~~~~~~-g~-----~~~~~~~spdg~~l~~~~~-~~~~v~v~~~d~~~-g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 294 GTLTKVGYQLT-GI-----HPRNFIITPNGKYLLVACR-DTNVIQIFERDQAT-GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEEEEEEEC-SS-----CCCEEEECTTSCEEEEEET-TTTEEEEEEECTTT-CCEEECSCCEECSSEEEEEEE
T ss_pred CcEEEeeEecC-CC-----CCceEEECCCCCEEEEEEC-CCCCEEEEEEECCC-CcEeecceeeeCCCCeEEEEc
Confidence 44333333333 32 7789999999998877654 56799998876432 2222111 2234467777775
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=8.3e-17 Score=186.87 Aligned_cols=267 Identities=9% Similarity=0.059 Sum_probs=185.6
Q ss_pred CCCCEEEEEEeCCCCEEEEEecC----CeEEEEECCC--CeE--EEEecccccCEEEEEEEcCCCEEEEEE-CCCeEEEE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHS----GVIQLWDYRM--GTL--IDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVW 78 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~d----g~I~iWd~~~--g~~--i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~vW 78 (1208)
|...+..++|+|||++|++++.+ +.|.+|++.. |+. +.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56777889999999999999875 7999998765 543 3444445566778888 888777776 67899999
Q ss_pred ECCCCeEEEEE------cc--------CCCCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCe-------E------EEE
Q 000961 79 NYKMHRCLFTL------LG--------HLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQSRT-------C------ISV 130 (1208)
Q Consensus 79 d~~~~~~~~~l------~~--------h~~~I~~v~fs~d~~~l~s~s~-Dg~I~iwd~~s~~-------~------i~~ 130 (1208)
++.....+..+ .+ +...+.+++|+|+++++++++. ++.|.+|++.... . ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754322111 11 1234688999999997776654 7899999887433 1 122
Q ss_pred EecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEE
Q 000961 131 LTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNW 209 (1208)
Q Consensus 131 l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 209 (1208)
...+...+.+++|+|+|+++++++ .++.|.+|++.++...... .......+......
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~----------------------~~~~~~~~~~~~~~ 263 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ----------------------TVAADTVNAQGSGD 263 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE----------------------EEESCSSCCCCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE----------------------EEecCCCCCCCccc
Confidence 233456688999999999888877 6899999998754321100 00011223345689
Q ss_pred EEEcCCCCEEEEEeCC--CcEEEEECC--CCceeEEEeecCcCCCeEEEEEccCCCEEEEEe-CCCcEEEE--eCCCCee
Q 000961 210 AAFHPTLPLIVSGADD--RQVKLWRMN--ETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS-EDKSIRVW--DVTKRTG 282 (1208)
Q Consensus 210 l~~sp~g~~L~sgs~d--g~I~iwd~~--~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs-~dg~I~vw--d~~~~~~ 282 (1208)
++|+|+|++|+++..+ +.|.+|++. +++...+..+.. ...+.+++|+|+|++|++++ .++.|.+| |..+++.
T Consensus 264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 9999999988776654 899999996 444333444444 56788999999999988887 57889996 5556665
Q ss_pred EEEe-ecCCCCEEEEEEe
Q 000961 283 VQTF-RREHDRFWILASH 299 (1208)
Q Consensus 283 ~~~~-~~~~~~i~~la~s 299 (1208)
.... ..+...+.++.|.
T Consensus 343 ~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 343 TDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EECSCCEECSSEEEEEEE
T ss_pred eecceeeeCCCCeEEEEc
Confidence 5433 2233467777775
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=2.7e-18 Score=204.34 Aligned_cols=207 Identities=14% Similarity=0.102 Sum_probs=158.2
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCC-----------eEEE----EecccccCEEEEEEEcCCCEEE----E
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMG-----------TLID----RFDEHDGPVRGVHFHKSQPLFV----S 68 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g-----------~~i~----~l~~h~~~V~~l~fsp~~~~La----s 68 (1208)
+...++.+++++++.++++++.+| |+||+.... .... ..-.|.+.|++++|+|++++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999998888 888874311 1110 0113567899999999999999 7
Q ss_pred EECCCeEEEEECCCC--------e---EEEEEccCCCCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCC
Q 000961 69 GGDDYKIKVWNYKMH--------R---CLFTLLGHLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRTCISVLTGHNH 136 (1208)
Q Consensus 69 gs~Dg~I~vWd~~~~--------~---~~~~l~~h~~~I~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~ 136 (1208)
|+.|+.|+|||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+....+|..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998654 2 24556779999999999998 78999999999999999999988777778999
Q ss_pred CEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC
Q 000961 137 YVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1208)
Q Consensus 137 ~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 216 (1208)
.|.+++|+|+|++|++|+.||+|++||.+. ......... . . ....|...|.+++|++++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~~~~~~---------~---~--------~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKKVIPCP---------P---F--------YESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEEEECCC---------T---T--------CCTTSCEEEEEEEEEETT
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccccccCC---------c---c--------cCCCCceeEEEEEEecCc
Confidence 999999999999999999999999999873 211100000 0 0 001234478999999988
Q ss_pred CEEEEEe-CCC------cEEEEECCCC
Q 000961 217 PLIVSGA-DDR------QVKLWRMNET 236 (1208)
Q Consensus 217 ~~L~sgs-~dg------~I~iwd~~~~ 236 (1208)
.++++.+ .+| .+++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 7765533 343 3899999865
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=8.6e-18 Score=208.85 Aligned_cols=270 Identities=7% Similarity=-0.027 Sum_probs=194.1
Q ss_pred cccCEEEEEEEcCCCEEEEEEC-CCeEEEEECCCCeEEEEEccCC-CCEEEEEEcCCCCEEEEEEC---CCcEEEEECCC
Q 000961 50 HDGPVRGVHFHKSQPLFVSGGD-DYKIKVWNYKMHRCLFTLLGHL-DYIRTVQFHHEYPWIVSASD---DQTIRIWNWQS 124 (1208)
Q Consensus 50 h~~~V~~l~fsp~~~~Lasgs~-Dg~I~vWd~~~~~~~~~l~~h~-~~I~~v~fs~d~~~l~s~s~---Dg~I~iwd~~s 124 (1208)
+..+|.+++|+|||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|| +.+++++. +...++|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 4678999999999999999887 999999999766654 455555 68999999999 77777765 45556654432
Q ss_pred ---CeEEEEEecCCCCEEEEEEeeCCC-EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 125 ---RTCISVLTGHNHYVMCASFHPKED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 125 ---~~~i~~l~~h~~~V~~l~~~p~~~-~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
+... .+..+ ..+...+|+|+++ .+++.+.++.+.+||+.+++... ..
T Consensus 98 ~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~---------------------------l~ 148 (582)
T 3o4h_A 98 SRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE---------------------------LA 148 (582)
T ss_dssp TSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE---------------------------EE
T ss_pred cCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE---------------------------ee
Confidence 3222 33322 2344678999885 34444455556699987644221 22
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC--cEEE
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADD----RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK--SIRV 274 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~d----g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg--~I~v 274 (1208)
. +.. .+++|+|||++|++++.+ +.|++||+.+++. ..+..|...+.+++|+|||++|++++.++ .|++
T Consensus 149 ~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~---~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~ 222 (582)
T 3o4h_A 149 R-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL---RVFDSGEGSFSSASISPGMKVTAGLETAREARLVT 222 (582)
T ss_dssp E-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC---EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred c-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc---eEeecCCCccccceECCCCCEEEEccCCCeeEEEE
Confidence 2 222 789999999999988877 7899999998874 46778888999999999999999888888 8999
Q ss_pred EeCCCCeeEEEeecCCCCEEEEE--------EeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEcc
Q 000961 275 WDVTKRTGVQTFRREHDRFWILA--------SHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFS 346 (1208)
Q Consensus 275 wd~~~~~~~~~~~~~~~~i~~la--------~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~ 346 (1208)
||+.+++.. .+..+...+..++ |+|||.+++++. .++.+++|++
T Consensus 223 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~--------------------------~~g~~~l~~~- 274 (582)
T 3o4h_A 223 VDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR--------------------------REGRSAVFID- 274 (582)
T ss_dssp ECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE--------------------------ETTEEEEEET-
T ss_pred EcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEE--------------------------cCCcEEEEEE-
Confidence 999988877 6666666666666 999997777766 4778889998
Q ss_pred CCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEcc
Q 000961 347 TQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIP 397 (1208)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~ 397 (1208)
++... .. ...+.+++|+ +++.++..+. ....-.+|.++
T Consensus 275 -g~~~~-----~~-----~~~v~~~~~s-dg~~l~~~s~-~~~p~~l~~~d 312 (582)
T 3o4h_A 275 -GERVE-----AP-----QGNHGRVVLW-RGKLVTSHTS-LSTPPRIVSLP 312 (582)
T ss_dssp -TEEEC-----CC-----SSEEEEEEEE-TTEEEEEEEE-TTEEEEEEEET
T ss_pred -CCeec-----cC-----CCceEEEEec-CCEEEEEEcC-CCCCCeEEEEc
Confidence 44322 11 1267889999 8876644433 44444555544
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=2.9e-16 Score=182.18 Aligned_cols=299 Identities=11% Similarity=0.063 Sum_probs=212.5
Q ss_pred CCCEEEEEe------cCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEE----------CCCeEEEEECCCC
Q 000961 20 KRPWILASL------HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG----------DDYKIKVWNYKMH 83 (1208)
Q Consensus 20 dg~~Lasg~------~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs----------~Dg~I~vWd~~~~ 83 (1208)
+++++.+.. .|+.|.+||..+++.+.++..+..+ .++|+|+++++++++ .++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 667777654 3679999999999999988877776 899999999998886 3678999999999
Q ss_pred eEEEEEccC------CCCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEE-EecCCCCEEEEEEeeCC-CEEEEE
Q 000961 84 RCLFTLLGH------LDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISV-LTGHNHYVMCASFHPKE-DLVVSA 153 (1208)
Q Consensus 84 ~~~~~l~~h------~~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~-l~~h~~~V~~l~~~p~~-~~l~s~ 153 (1208)
+.+.++..+ ......++|+|||++|++++. +++|.+||+.+++.+.. +.. .+ ...+.+.|++ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEE
Confidence 988887643 345678999999999998874 58999999999998887 543 22 2335677766 678889
Q ss_pred ECCCeEEEEECCC-CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000961 154 SLDQTVRVWDIGA-LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 154 s~Dg~V~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd 232 (1208)
+.||.+.+|++.. ++....... . ..+..+..++ .+.++|++..++..+.++.|.++|
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~----------~-----------~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d 227 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRS----------K-----------QMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSAD 227 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEEC----------C-----------CCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEE
T ss_pred CCCCcEEEEEECCCCcEeeeccc----------c-----------ceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEE
Confidence 9999999999854 221100000 0 0011111121 233456777777778889999999
Q ss_pred CCCCceeEEEeecC------c----CCCeEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCeeEEEeecCCC
Q 000961 233 MNETKAWEVDTLRG------H----MNNVSCVMFHAKQDIIVSNSE-----------DKSIRVWDVTKRTGVQTFRREHD 291 (1208)
Q Consensus 233 ~~~~~~~~~~~l~~------h----~~~V~~l~~sp~g~~l~sgs~-----------dg~I~vwd~~~~~~~~~~~~~~~ 291 (1208)
+..........+.. + ......++|+|+++.++++.. .+.|.+||+.+++.+.++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 228 FSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp CSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 87654322222110 0 011223789999888777643 3479999999999999988776
Q ss_pred CEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEE
Q 000961 292 RFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (1208)
Q Consensus 292 ~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (1208)
.+.++++|+|++++++. . +.|.+||..+++...+..+...|. .+..+
T Consensus 307 -p~~ia~spdg~~l~v~n--------------------------~-~~v~v~D~~t~~l~~~~~i~~~G~-----~P~~~ 353 (361)
T 2oiz_A 307 -ALSMTIDQQRNLMLTLD--------------------------G-GNVNVYDISQPEPKLLRTIEGAAE-----ASLQV 353 (361)
T ss_dssp -CCEEEEETTTTEEEEEC--------------------------S-SCEEEEECSSSSCEEEEEETTSCS-----SEEEE
T ss_pred -eeEEEECCCCCEEEEeC--------------------------C-CeEEEEECCCCcceeeEEeccCCC-----CcEEE
Confidence 89999999999888765 2 568899999883223334333343 77889
Q ss_pred EEcCCCC
Q 000961 372 SYSPTEN 378 (1208)
Q Consensus 372 ~~spdg~ 378 (1208)
+++|+|+
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 9999986
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=2.2e-16 Score=181.67 Aligned_cols=243 Identities=8% Similarity=-0.023 Sum_probs=174.6
Q ss_pred EEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCC-CCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCeEEEEEec
Q 000961 56 GVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL-DYIRTVQFHHEYPWIVS-ASDDQTIRIWNWQSRTCISVLTG 133 (1208)
Q Consensus 56 ~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~-~~I~~v~fs~d~~~l~s-~s~Dg~I~iwd~~s~~~i~~l~~ 133 (1208)
++++++++.++++++.+++|.+||..+++.+.++..+. ..+..++|+|+++++++ ...++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678889999999999999999999999988886543 25789999999986654 45689999999999998877764
Q ss_pred CC------CCEEEEEEeeCCCEEEEEECC------------CeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 134 HN------HYVMCASFHPKEDLVVSASLD------------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 134 h~------~~V~~l~~~p~~~~l~s~s~D------------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
+. ..+.+++|+|+|+++++++.+ +.|.+||+.+.+.....
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------------------- 141 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV---------------------- 141 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS----------------------
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee----------------------
Confidence 32 236789999999999998865 89999998764322110
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcC---------------------------
Q 000961 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM--------------------------- 248 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~--------------------------- 248 (1208)
... .+...+.+++|+|+|+ +++++ +.|.+||..+++. ...+..+.
T Consensus 142 --~~~-~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 142 --RTF-PMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY--TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp --EEE-ECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE--EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred --eec-cCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce--eccccccccCCccccCccceeeecCCCcceeEEee
Confidence 011 2334688899999999 55554 3499999988775 22322111
Q ss_pred -----------------------------------------CCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 000961 249 -----------------------------------------NNVSCVMFHA-KQDIIVSNSEDKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 249 -----------------------------------------~~V~~l~~sp-~g~~l~sgs~dg~I~vwd~~~~~~~~~~ 286 (1208)
..+.+++|+| ++++++++ ++.|.+||+.+++.+..+
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 291 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA 291 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE
Confidence 1344566667 77777766 667777777777766665
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeec
Q 000961 287 RREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIR 357 (1208)
Q Consensus 287 ~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~ 357 (1208)
... ..+..++|+|+++.++++. .++.|.+||..+++.+..+.+.
T Consensus 292 ~~~-~~~~~~~~s~dg~~l~~~~--------------------------~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 292 NLD-HTYYCVAFDKKGDKLYLGG--------------------------TFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ECS-SCCCEEEECSSSSCEEEES--------------------------BSSEEEEEETTTTEEEEEEECS
T ss_pred cCC-CCccceEECCCCCEEEEec--------------------------CCCeEEEEeccccceeeeeecC
Confidence 532 3356777777776665543 4678999999888776555443
No 168
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=1.6e-16 Score=189.02 Aligned_cols=159 Identities=11% Similarity=0.021 Sum_probs=134.6
Q ss_pred CCCCEEEEEEeCCCCEEE----EEecCCeEEEEECCCC--------e---EEEEecccccCEEEEEEEcC-CCEEEEEEC
Q 000961 8 KSNRVKGLSFHSKRPWIL----ASLHSGVIQLWDYRMG--------T---LIDRFDEHDGPVRGVHFHKS-QPLFVSGGD 71 (1208)
Q Consensus 8 h~~~V~~lafspdg~~La----sg~~dg~I~iWd~~~g--------~---~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~ 71 (1208)
|...|.+++|+|+|++|+ +|+.|+.|+|||+.++ + .+..+.+|...|++++|+|+ +.+|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 566799999999999999 6778999999998765 1 24566789999999999998 789999999
Q ss_pred CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-------CCEEEEEEe
Q 000961 72 DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN-------HYVMCASFH 144 (1208)
Q Consensus 72 Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~-------~~V~~l~~~ 144 (1208)
||+|++||++++..+....+|...|.+++|+|++++|++|+.||+|++||.+ ++....+..|. ..|.++.|+
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 9999999999998877778899999999999999999999999999999998 56666665442 389999999
Q ss_pred eCCCEEEEE-ECCC------eEEEEECCCC
Q 000961 145 PKEDLVVSA-SLDQ------TVRVWDIGAL 167 (1208)
Q Consensus 145 p~~~~l~s~-s~Dg------~V~vwdl~~~ 167 (1208)
+++.++++. +.+| .+++|++...
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 988766543 3443 3899999764
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=8.5e-16 Score=178.77 Aligned_cols=262 Identities=11% Similarity=0.058 Sum_probs=177.3
Q ss_pred EEEEEecC--CeEEEEEC--CCCeEEE--Eec-ccccCEEEEEEEcCCCEEEEEECCCeEEEEECC-CCeEEEEEccC-C
Q 000961 23 WILASLHS--GVIQLWDY--RMGTLID--RFD-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK-MHRCLFTLLGH-L 93 (1208)
Q Consensus 23 ~Lasg~~d--g~I~iWd~--~~g~~i~--~l~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~-~~~~~~~l~~h-~ 93 (1208)
++++|+.. +.|.+|++ .+|++.. ... .+...+..++|+|++++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35566543 56887764 5665432 221 234468899999999999999887 99999997 77765433211 1
Q ss_pred CCEEEEEEcCCCCE--EEEEE-------------CCCcEEEEECC-CCeEEEEEe----cCCCCEEEEEEeeCCCEEEEE
Q 000961 94 DYIRTVQFHHEYPW--IVSAS-------------DDQTIRIWNWQ-SRTCISVLT----GHNHYVMCASFHPKEDLVVSA 153 (1208)
Q Consensus 94 ~~I~~v~fs~d~~~--l~s~s-------------~Dg~I~iwd~~-s~~~i~~l~----~h~~~V~~l~~~p~~~~l~s~ 153 (1208)
+.+.+++|+|++++ +++++ .+|++.+|++. +++....+. .+...+.+++|+|+|++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23556899999994 44553 68999999997 466554443 255679999999999988887
Q ss_pred EC-CCeEEEEECC-CCccccccCCCcceeeccccccccccccceEEEEEe--ccCCCeEEEEEcCCCCEEEEEeC-CCcE
Q 000961 154 SL-DQTVRVWDIG-ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE--GHDRGVNWAAFHPTLPLIVSGAD-DRQV 228 (1208)
Q Consensus 154 s~-Dg~V~vwdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~g~~L~sgs~-dg~I 228 (1208)
+. ++.|++|++. +++... ...+. .|...+..++|+|+|+++++++. ++.|
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~-------------------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 217 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVEL-------------------------VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEE-------------------------EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred cCCCCEEEEEEECCCCCEEE-------------------------eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE
Confidence 64 6899999987 432210 01122 24567899999999999888775 7899
Q ss_pred EEEECC--CCcee----EEEeec----CcCC------CeEEEE-EccCCCEEEEEeCCC------cEEEEeCC-CCeeEE
Q 000961 229 KLWRMN--ETKAW----EVDTLR----GHMN------NVSCVM-FHAKQDIIVSNSEDK------SIRVWDVT-KRTGVQ 284 (1208)
Q Consensus 229 ~iwd~~--~~~~~----~~~~l~----~h~~------~V~~l~-~sp~g~~l~sgs~dg------~I~vwd~~-~~~~~~ 284 (1208)
.+|++. +++.. .+..+. +|.. .+..++ |+|+|++|+++..+. .|.+|++. +++...
T Consensus 218 ~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 218 CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp EEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred EEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 999875 34431 122222 1222 588999 999999888765432 89999986 565443
Q ss_pred E---eecCCCCEEEEEEeC---CCCEEEEEEC
Q 000961 285 T---FRREHDRFWILASHP---EMNLLAAGHD 310 (1208)
Q Consensus 285 ~---~~~~~~~i~~la~sp---~~~~la~g~~ 310 (1208)
. ...+......++++| +|++++++..
T Consensus 298 ~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 298 QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp EEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred eeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence 1 222334456778888 7887777653
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=6.5e-17 Score=189.85 Aligned_cols=264 Identities=8% Similarity=0.027 Sum_probs=185.8
Q ss_pred EEEEEEeCCCCEEEEEecC---CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE
Q 000961 12 VKGLSFHSKRPWILASLHS---GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~~d---g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1208)
+.+++|||||++|+.+... ..|.+||..+++.......+......+.|+|+|++|+.++.++.|++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 7788999999998887543 4788999988876554433333333478999999999999999999999998876655
Q ss_pred EccCCCCEEE-------------------EEEcCCCCEEEEE-----ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEe
Q 000961 89 LLGHLDYIRT-------------------VQFHHEYPWIVSA-----SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFH 144 (1208)
Q Consensus 89 l~~h~~~I~~-------------------v~fs~d~~~l~s~-----s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~ 144 (1208)
...+...... +.|+|++++++.+ ..+..|.+||+.+++..... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 5545443333 3567777766544 35678999999988765554 466789999999
Q ss_pred e-CCCEEEEEECC------CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc--CCCeEEEEEcCC
Q 000961 145 P-KEDLVVSASLD------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH--DRGVNWAAFHPT 215 (1208)
Q Consensus 145 p-~~~~l~s~s~D------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~ 215 (1208)
| +++.|+..+.+ ..|.+||+.+..... +..+ ...+..++|+|+
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----------------------------l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK----------------------------IKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE----------------------------SSCCCTTEEEEEEEECTT
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeE----------------------------eeccCCCccccceEECCC
Confidence 9 78877776654 358888876533211 1111 224678899999
Q ss_pred CCEEEEEeCC-----CcEEEEECCCCceeEEEeecCcCCCeEEEEEcc-CCCEEEEEe----------------CCCcEE
Q 000961 216 LPLIVSGADD-----RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA-KQDIIVSNS----------------EDKSIR 273 (1208)
Q Consensus 216 g~~L~sgs~d-----g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp-~g~~l~sgs----------------~dg~I~ 273 (1208)
|+.|+.++.+ +.|++||+.+++...+....+ .. +.|+| +|+++++++ .++.|.
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~ 323 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY 323 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence 9988777543 449999998887533333322 23 89999 999888765 346899
Q ss_pred EEeCCCCeeEEEeecCCC-----------CEEEEEEeCCCCEEEEEEC
Q 000961 274 VWDVTKRTGVQTFRREHD-----------RFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 274 vwd~~~~~~~~~~~~~~~-----------~i~~la~sp~~~~la~g~~ 310 (1208)
+||+.+++.. .+..+.. ....++|+|+|+.|+..+.
T Consensus 324 ~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 324 VLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp EEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred EEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 9999877653 3333333 2456788999988877664
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.72 E-value=2.5e-16 Score=183.23 Aligned_cols=250 Identities=6% Similarity=0.005 Sum_probs=177.7
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECC-CCeEEEEeccc-ccCEEEEEEEcCCCE--EEEEE-------------C
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYR-MGTLIDRFDEH-DGPVRGVHFHKSQPL--FVSGG-------------D 71 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~-~g~~i~~l~~h-~~~V~~l~fsp~~~~--Lasgs-------------~ 71 (1208)
...+..++|+|+|++|++++.+ .|.+|++. +|++....... .+.+.+++|+|+|++ +++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3468899999999999988877 99999997 78765443211 133566899999994 44542 6
Q ss_pred CCeEEEEECC-CCeEEEEEc----cCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEECC-CCeEE--EEEe--cCCCCEEE
Q 000961 72 DYKIKVWNYK-MHRCLFTLL----GHLDYIRTVQFHHEYPWIVSASD-DQTIRIWNWQ-SRTCI--SVLT--GHNHYVMC 140 (1208)
Q Consensus 72 Dg~I~vWd~~-~~~~~~~l~----~h~~~I~~v~fs~d~~~l~s~s~-Dg~I~iwd~~-s~~~i--~~l~--~h~~~V~~ 140 (1208)
++.+.+|++. +++....+. .+...+.+++|+|||+++++++. ++.|++|++. +++.. ..+. .|...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 8999999997 466554443 25678999999999998887764 6799999998 67653 3343 24567999
Q ss_pred EEEeeCCCEEEEEEC-CCeEEEEECCC--CccccccCCCcceeeccccccccccccceEEEEE----eccCC------Ce
Q 000961 141 ASFHPKEDLVVSASL-DQTVRVWDIGA--LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL----EGHDR------GV 207 (1208)
Q Consensus 141 l~~~p~~~~l~s~s~-Dg~V~vwdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~------~V 207 (1208)
++|+|+|+++++++. ++.|.+|++.. ++..... . ....+ .+|.. .+
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~------~---------------~~~~~~~~~~g~~~~~~~~~~~ 256 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH------H---------------SFPLIPPGIPDRDPETGKGLYR 256 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE------E---------------EEESSCTTCCCBCTTTSSBSEE
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc------c---------------eEEcCCCCcCCccccccccccc
Confidence 999999999988875 78999998753 2211000 0 00001 12222 47
Q ss_pred EEEE-EcCCCCEEEEEeCC-C-----cEEEEECC-CCceeEEE-eecCcCCCeEEEEEcc---CCCEEEEEeCC-CcEEE
Q 000961 208 NWAA-FHPTLPLIVSGADD-R-----QVKLWRMN-ETKAWEVD-TLRGHMNNVSCVMFHA---KQDIIVSNSED-KSIRV 274 (1208)
Q Consensus 208 ~~l~-~sp~g~~L~sgs~d-g-----~I~iwd~~-~~~~~~~~-~l~~h~~~V~~l~~sp---~g~~l~sgs~d-g~I~v 274 (1208)
..++ |+|+|++|+++..+ . .|.+|++. +++...+. ....+...+..++|+| +|++|++++.+ +.|.+
T Consensus 257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v 336 (365)
T 1jof_A 257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence 8899 99999988876643 2 89999996 45532222 2334555677899999 89999998865 89999
Q ss_pred EeCCCC
Q 000961 275 WDVTKR 280 (1208)
Q Consensus 275 wd~~~~ 280 (1208)
|++...
T Consensus 337 ~~~~~~ 342 (365)
T 1jof_A 337 YRWKDE 342 (365)
T ss_dssp EEEETT
T ss_pred EEEchh
Confidence 998755
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=2.3e-16 Score=185.18 Aligned_cols=320 Identities=11% Similarity=0.055 Sum_probs=201.1
Q ss_pred EEEEECCCCeEEEEecccccC-----EEEEEEEcCCCEEEEEECC---CeEEEEECCCCeEEEEEccCCCCEEEEEEcCC
Q 000961 33 IQLWDYRMGTLIDRFDEHDGP-----VRGVHFHKSQPLFVSGGDD---YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE 104 (1208)
Q Consensus 33 I~iWd~~~g~~i~~l~~h~~~-----V~~l~fsp~~~~Lasgs~D---g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d 104 (1208)
...+|..++..+..+..+... +..++|+|+|++|+..... ..|.+||+.+++......++......+.|+||
T Consensus 12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred heeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 345588888888888665444 7788999999998877643 47899999888765443333322334789999
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEE-------------------EEEeeCCCEEEEE-----ECCCeEE
Q 000961 105 YPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMC-------------------ASFHPKEDLVVSA-----SLDQTVR 160 (1208)
Q Consensus 105 ~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~-------------------l~~~p~~~~l~s~-----s~Dg~V~ 160 (1208)
+++|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|.
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 999999999999999999998877666655542222 2344444444332 2345666
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEEC
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADD------RQVKLWRM 233 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~d------g~I~iwd~ 233 (1208)
+||+.+++.. .+..+...+..+.|+| ++..|+..+.+ ..|.+|+.
T Consensus 172 ~~d~~~g~~~----------------------------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (396)
T 3c5m_A 172 KVDIETGELE----------------------------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNE 223 (396)
T ss_dssp EEETTTCCEE----------------------------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEET
T ss_pred EEECCCCcEE----------------------------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEEC
Confidence 7776553321 1224567788999999 78877776643 36888898
Q ss_pred CCCceeEEEeecCc--CCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeeEEEeecCCCCEEEEEEeC-CCCEE
Q 000961 234 NETKAWEVDTLRGH--MNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKRTGVQTFRREHDRFWILASHP-EMNLL 305 (1208)
Q Consensus 234 ~~~~~~~~~~l~~h--~~~V~~l~~sp~g~~l~sgs~d-----g~I~vwd~~~~~~~~~~~~~~~~i~~la~sp-~~~~l 305 (1208)
.+++. ..+..+ ...+..+.|+|+|++|+.++.+ +.|++||+.+++........ ... +.|+| +++++
T Consensus 224 ~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l 297 (396)
T 3c5m_A 224 DGSNV---RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLM 297 (396)
T ss_dssp TSCCC---EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEE
T ss_pred CCCce---eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceE
Confidence 77653 223223 2357889999999988777544 44999999887654432222 233 88999 99988
Q ss_pred EEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCC----CCCCCcCCeEEEEcCCCCEEE
Q 000961 306 AAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPG----STSLNQSPRTLSYSPTENAVL 381 (1208)
Q Consensus 306 a~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~spdg~~ll 381 (1208)
+++....-.... ++...-...+..|.+||+.+++...+....... ... ...+..++|+|||+.++
T Consensus 298 ~~~~~~~p~~~~----------~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~ 366 (396)
T 3c5m_A 298 VGDGCDAPVDVA----------DADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDR-QITHPHPSFTPNDDGVL 366 (396)
T ss_dssp EEEECCC--------------------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBS-STTCCCCEECTTSSEEE
T ss_pred EEecCCcceeec----------cccccccCCCCcEEEEecccCceEEccCCCCccccccccc-cCCCCCceEccCCCeEE
Confidence 765432100000 000000002467889999887654332211100 000 00256679999999988
Q ss_pred EEEecCCCEEEEEEccC
Q 000961 382 ICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 382 v~~~~~~g~v~l~~l~~ 398 (1208)
+.+. .++...+|.+..
T Consensus 367 ~~s~-~~~~~~l~~~~~ 382 (396)
T 3c5m_A 367 FTSD-FEGVPAIYIADV 382 (396)
T ss_dssp EEEC-TTSSCEEEEEEC
T ss_pred EEec-CCCCceEEEEEE
Confidence 7765 345566776653
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=4.8e-16 Score=196.25 Aligned_cols=264 Identities=12% Similarity=0.022 Sum_probs=191.4
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEE--ecCCeEEEEECCCCeEEEEecccccCEE---------EEEEE--cCCCE-EEEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILAS--LHSGVIQLWDYRMGTLIDRFDEHDGPVR---------GVHFH--KSQPL-FVSG 69 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg--~~dg~I~iWd~~~g~~i~~l~~h~~~V~---------~l~fs--p~~~~-Lasg 69 (1208)
.+.+|...|..++|++++-+++.. ..++...||....+.....+..|...+. ...|+ |||+. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356799999999999887666666 4578899999655556677777777776 67776 99998 7766
Q ss_pred EC-CCeEEEEECC--CCeEEEEEcc-----CCCCEEEEEEcCCCCEEEEEECC----------CcEEEEECCC------C
Q 000961 70 GD-DYKIKVWNYK--MHRCLFTLLG-----HLDYIRTVQFHHEYPWIVSASDD----------QTIRIWNWQS------R 125 (1208)
Q Consensus 70 s~-Dg~I~vWd~~--~~~~~~~l~~-----h~~~I~~v~fs~d~~~l~s~s~D----------g~I~iwd~~s------~ 125 (1208)
+. +..|.+|+.. .......+.. |...+..++|+|||++|++++.+ ..|++||+.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 54 5667777765 2034455655 66788999999999999998877 5899999987 5
Q ss_pred eEEEEEe-cCCCCEEEEEEeeCCCEEEEEECC--------CeEEEEECC-CCccccccCCCcceeeccccccccccccce
Q 000961 126 TCISVLT-GHNHYVMCASFHPKEDLVVSASLD--------QTVRVWDIG-ALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 126 ~~i~~l~-~h~~~V~~l~~~p~~~~l~s~s~D--------g~V~vwdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
+. ..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++... .
T Consensus 178 ~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~------------------------~ 232 (662)
T 3azo_A 178 AV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA------------------------D 232 (662)
T ss_dssp GS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE------------------------E
T ss_pred ce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc------------------------c
Confidence 54 4455 566788889999999999988755 379999987 33110 1
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEeecCcCCC--------eEEEEEccCCCEEEE
Q 000961 196 VKYVLEGHDRGVNWAAFHPTLPLIVSGADDR--QVKLWRMNETKAWEVDTLRGHMNN--------VSCVMFHAKQDIIVS 265 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg--~I~iwd~~~~~~~~~~~l~~h~~~--------V~~l~~sp~g~~l~s 265 (1208)
......+|...+..++|+|||++++++..++ .|.+|+..+++. ......+... +.+++|+|++.++++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce--eecccccccccCccccccCceEeEeCCCEEEEE
Confidence 2223445678899999999999888888888 566666656653 2222222222 567899999999999
Q ss_pred EeCCCcEEEE--eCCCCeeEEEeecCCCCEEEE
Q 000961 266 NSEDKSIRVW--DVTKRTGVQTFRREHDRFWIL 296 (1208)
Q Consensus 266 gs~dg~I~vw--d~~~~~~~~~~~~~~~~i~~l 296 (1208)
++. +.+++| |..++. +..+..+...+..+
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~ 341 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT 341 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence 998 999999 655555 56666666666655
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=5.3e-15 Score=171.54 Aligned_cols=275 Identities=11% Similarity=0.050 Sum_probs=195.9
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEec----------CCeEEEEECCCCeEEEEeccc------ccCEEEEEEEcCCCEEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASLH----------SGVIQLWDYRMGTLIDRFDEH------DGPVRGVHFHKSQPLFV 67 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~~----------dg~I~iWd~~~g~~i~~l~~h------~~~V~~l~fsp~~~~La 67 (1208)
++..+..+ .++|||||++++++.. ++.|.+||..+++.+.++..+ ......++|+|+|++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 44455444 8999999999999863 578999999999988877532 23467899999999999
Q ss_pred EEEC--CCeEEEEECCCCeEEEE-EccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCC-CeEEEEE------ecCCC
Q 000961 68 SGGD--DYKIKVWNYKMHRCLFT-LLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQS-RTCISVL------TGHNH 136 (1208)
Q Consensus 68 sgs~--Dg~I~vWd~~~~~~~~~-l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s-~~~i~~l------~~h~~ 136 (1208)
++.. +++|.+||+.+++.+.+ +.. .. ...+.+.|++ ..+++.+.||.+.+|+... ++..... ..+..
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~ 201 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD 201 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS
T ss_pred EECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC
Confidence 8863 68999999999998887 542 22 2335677776 6788889999999999864 5554222 12222
Q ss_pred CEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC
Q 000961 137 YVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL 216 (1208)
Q Consensus 137 ~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g 216 (1208)
++ .+.++|++..++..+.++.|.++|+.......... +..........+ + ...+...++|+|++
T Consensus 202 ~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~~~---------~--~p~g~~~~a~~~dg 265 (361)
T 2oiz_A 202 PI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGP----WSLLNDEDKAKN---------W--VPGGYNLVGLHRAS 265 (361)
T ss_dssp CB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEE----EESCCHHHHHTT---------C--EECCSSCEEEETTT
T ss_pred ce-EEEecccCCEEEEEeCCCeEEEEEecCCCceeccc----ccccCccccccc---------c--ccCCeeEEEEecCC
Confidence 22 33457788788888889999999986533211000 000000000000 0 00111236899998
Q ss_pred CEEEEEeC-----------CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--eeE
Q 000961 217 PLIVSGAD-----------DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR--TGV 283 (1208)
Q Consensus 217 ~~L~sgs~-----------dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~--~~~ 283 (1208)
+.++++.. .+.|.+||..+.+. +.++..+. +.+++|+|+|++|++++. ++|.+||..++ +.+
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 88777653 34799999999986 67777666 999999999999998887 99999999999 999
Q ss_pred EEeecCCCCEEEEEEeCCCC
Q 000961 284 QTFRREHDRFWILASHPEMN 303 (1208)
Q Consensus 284 ~~~~~~~~~i~~la~sp~~~ 303 (1208)
.++.......+.++++|+|.
T Consensus 341 ~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 341 RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTSCSSEEEEEECCCSC
T ss_pred EEeccCCCCcEEEEecCCCC
Confidence 88766777788999999985
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=1.9e-14 Score=160.91 Aligned_cols=239 Identities=13% Similarity=0.188 Sum_probs=180.6
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEec------ccccCEEEEEEE-cCCCEEEEEEC-CCeEEEE
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD------EHDGPVRGVHFH-KSQPLFVSGGD-DYKIKVW 78 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~------~h~~~V~~l~fs-p~~~~Lasgs~-Dg~I~vW 78 (1208)
+|-..+.+++++|++.++++...++.|.+||.. ++.+..+. +|...+.+++++ +++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 445679999999999988888889999999976 66666663 244678999995 67766666543 7899999
Q ss_pred ECCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCEEEEEEeeCCCEEEEEEC
Q 000961 79 NYKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT--GHNHYVMCASFHPKEDLVVSASL 155 (1208)
Q Consensus 79 d~~~~~~~~~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~--~h~~~V~~l~~~p~~~~l~s~s~ 155 (1208)
| .+++.+..+. .+...+..+++++++..+++...++.|.+||.. ++.+..+. .+...+.+++++|+++++++.+.
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 5677777664 345678999999999977777778999999964 55666554 44567899999999987777777
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE--eccCCCeEEEEEcCCCCEEEEEeCCC-cEEEEE
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL--EGHDRGVNWAAFHPTLPLIVSGADDR-QVKLWR 232 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~g~~L~sgs~dg-~I~iwd 232 (1208)
++.|++||..+.... .+ .++...+..++++|+|+++++...++ .|.+|+
T Consensus 184 ~~~i~~~~~~g~~~~----------------------------~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 184 AHCVKVFNYEGQYLR----------------------------QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp GTEEEEEETTCCEEE----------------------------EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred CCEEEEEcCCCCEEE----------------------------EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 899999997542111 11 12235678999999999888887776 999999
Q ss_pred CCCCceeEEEeecCc--CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 233 MNETKAWEVDTLRGH--MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 233 ~~~~~~~~~~~l~~h--~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
.... . +..+..+ ...+.+++++|+|+++++ +.++.|++|+....
T Consensus 236 ~~g~-~--~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 236 QDGQ-L--ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TTSC-E--EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCC-E--EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 6543 3 3333332 345789999999987777 67999999997653
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=1.4e-14 Score=165.78 Aligned_cols=242 Identities=11% Similarity=0.115 Sum_probs=184.9
Q ss_pred CCCEEEEEEeCCCCEEEEEecC------------------------CeEEEEECCCCeEEEEec-ccccCEEEEEEEcCC
Q 000961 9 SNRVKGLSFHSKRPWILASLHS------------------------GVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQ 63 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~d------------------------g~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~~ 63 (1208)
-+.|.+++++|+|+++++...+ +.|.+||..+++.+..+. .+-....+++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999988888766 479999998999887764 455678999999999
Q ss_pred CEEEEEECCCeEEEEECCCCe-EEEEE---------ccCCCCEEEEEEcC-CCCEEEEEE-CCCcEEEEECCCCeEEEEE
Q 000961 64 PLFVSGGDDYKIKVWNYKMHR-CLFTL---------LGHLDYIRTVQFHH-EYPWIVSAS-DDQTIRIWNWQSRTCISVL 131 (1208)
Q Consensus 64 ~~Lasgs~Dg~I~vWd~~~~~-~~~~l---------~~h~~~I~~v~fs~-d~~~l~s~s-~Dg~I~iwd~~s~~~i~~l 131 (1208)
+++++...++.|++||..... .+.++ .++......++|+| ++..+++.+ .++.|++|+ .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 998888889999999986442 55665 34556799999999 787777775 689999999 567777766
Q ss_pred ecC----------CCCEEEEEEeeC-CCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 132 TGH----------NHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 132 ~~h----------~~~V~~l~~~p~-~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
... -..+..++++|+ +.++++...++.|++||..+++.... ...
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~-------------------------~~~ 236 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE-------------------------IKH 236 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-------------------------ECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE-------------------------Eec
Confidence 422 234899999998 67777777889999999875432211 111
Q ss_pred eccCCCeEEEEEcC------CCCEEEEEeCCCcEEEEECCCCceeEEEee---cCcCCCeEEEEEccCCCEEEEEeCCCc
Q 000961 201 EGHDRGVNWAAFHP------TLPLIVSGADDRQVKLWRMNETKAWEVDTL---RGHMNNVSCVMFHAKQDIIVSNSEDKS 271 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp------~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l---~~h~~~V~~l~~sp~g~~l~sgs~dg~ 271 (1208)
..+...+..++|+| +|+..++...+..|++|+..+++. +..+ .++...+..++++|+|.++++...++.
T Consensus 237 ~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~ 314 (329)
T 3fvz_A 237 ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT 314 (329)
T ss_dssp TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC
T ss_pred cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE
Confidence 23556678888888 333223333455899999998886 4444 467778999999999988888888999
Q ss_pred EEEEeCC
Q 000961 272 IRVWDVT 278 (1208)
Q Consensus 272 I~vwd~~ 278 (1208)
|++|++.
T Consensus 315 I~~~~~~ 321 (329)
T 3fvz_A 315 VWKFTLT 321 (329)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999865
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=2.3e-13 Score=165.85 Aligned_cols=328 Identities=10% Similarity=0.046 Sum_probs=225.9
Q ss_pred CCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC--CCeEEEEEccCCCCE
Q 000961 19 SKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK--MHRCLFTLLGHLDYI 96 (1208)
Q Consensus 19 pdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~--~~~~~~~l~~h~~~I 96 (1208)
|.+..+++...++.|.+||..+++.+.++... ..+.++.|+|+|+++++++.|+.|.+||+. +++.+.++.... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 44445666667899999999999999888643 356799999999999999999999999995 888888876533 46
Q ss_pred EEEEEc----CCCCEEEEEEC-CCcEEEEECCCCeEEEEEecC-----------CCCEEEEEEeeCCCE-EEEEECCCeE
Q 000961 97 RTVQFH----HEYPWIVSASD-DQTIRIWNWQSRTCISVLTGH-----------NHYVMCASFHPKEDL-VVSASLDQTV 159 (1208)
Q Consensus 97 ~~v~fs----~d~~~l~s~s~-Dg~I~iwd~~s~~~i~~l~~h-----------~~~V~~l~~~p~~~~-l~s~s~Dg~V 159 (1208)
+.++|+ |||+++++++. +++|.|+|..+.+.+..+... ...+..+..++++.. ++....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 899999 69998887765 599999999999998877521 125778888887654 4445567999
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKA 238 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~ 238 (1208)
.++|....+... ............+.|+|+|++++++. .++.|.++|..+++.
T Consensus 323 ~~vd~~~~~~~~--------------------------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 323 LLVDYTDLNNLK--------------------------TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp EEEETTCSSEEE--------------------------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEecCCCccce--------------------------eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 999987643111 11112334566889999999987766 578999999999886
Q ss_pred eEEEee---cCcCCCeEEEEEccCCCEEE-EEe-CCCcEEEEeCCC-------CeeEEEeecCCCCEEEEEEeCCCCEEE
Q 000961 239 WEVDTL---RGHMNNVSCVMFHAKQDIIV-SNS-EDKSIRVWDVTK-------RTGVQTFRREHDRFWILASHPEMNLLA 306 (1208)
Q Consensus 239 ~~~~~l---~~h~~~V~~l~~sp~g~~l~-sgs-~dg~I~vwd~~~-------~~~~~~~~~~~~~i~~la~sp~~~~la 306 (1208)
...... ..|.+.-.. .++|++..+. ++. .+++|.++|..+ .+.++++......-..+..+|+++.+.
T Consensus 377 ~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 377 VAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 455 (567)
T ss_dssp EEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred EEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEE
Confidence 332222 123322222 2688755444 443 468999999987 667777775544334466788888776
Q ss_pred EEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCC-----cce-eeEee------cCCCCCCCCcCCeEEEEc
Q 000961 307 AGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQ-----KDT-QVIPI------RRPGSTSLNQSPRTLSYS 374 (1208)
Q Consensus 307 ~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~-----~~~-~~~~~------~~~~~~~~~~~i~~l~~s 374 (1208)
+....+- ... ..++|.++|+.+. ... ..+.+ ...+ . .+..+.|+
T Consensus 456 v~~~~~~-------~~~------------~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~ 511 (567)
T 1qks_A 456 VDATLNP-------EAE------------ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ--P---RVVQGEFN 511 (567)
T ss_dssp EECTTCS-------SHH------------HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC--C---EEEEEEEC
T ss_pred EecCCCC-------Ccc------------cCceEEEEECCcccccccCCCcEEeccccccccCCCC--c---ceEeeeEC
Confidence 6542100 000 0346778887765 211 22221 1112 2 77899999
Q ss_pred CCCCEEEEEEec---CCCEEEEEEccCC
Q 000961 375 PTENAVLICSDV---DGGSYELYVIPKD 399 (1208)
Q Consensus 375 pdg~~llv~~~~---~~g~v~l~~l~~~ 399 (1208)
|+|+.+.++... .++.|.+++..+.
T Consensus 512 ~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 512 KDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 999999887542 4578888886643
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=1.7e-14 Score=165.16 Aligned_cols=269 Identities=10% Similarity=0.036 Sum_probs=197.1
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1208)
+..|.+++|++++..++....++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||..+++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 4568889999998888777788899999 4566777777777889999999999888888899999999988876655
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECC----CcEEEEECCCCeEEEEEe--cCCCCEEEEEEeeCCCEEEEEEC------C
Q 000961 89 LLGHLDYIRTVQFHHEYPWIVSASDD----QTIRIWNWQSRTCISVLT--GHNHYVMCASFHPKEDLVVSASL------D 156 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~~l~s~s~D----g~I~iwd~~s~~~i~~l~--~h~~~V~~l~~~p~~~~l~s~s~------D 156 (1208)
...+...+.+++|++++.++++...+ +.|.+||..++.....+. .+...+.++.++|+++++++... .
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 54567889999999999877777666 689999998877654443 34567999999999987776553 2
Q ss_pred CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 000961 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNE 235 (1208)
Q Consensus 157 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sg-s~dg~I~iwd~~~ 235 (1208)
+.|..+|..+.+.. .+..+...+..++|+|+++.++++ +.++.|.+|+..+
T Consensus 162 ~~l~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 162 GGVYYVSPDFRTVT----------------------------PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EEEEEECTTSCCEE----------------------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ceEEEEeCCCCEEE----------------------------EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 45555554432211 111223457889999999866544 5678999999964
Q ss_pred -CceeE-E-----EeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCC------CEEEEEEeCCC
Q 000961 236 -TKAWE-V-----DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD------RFWILASHPEM 302 (1208)
Q Consensus 236 -~~~~~-~-----~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~------~i~~la~sp~~ 302 (1208)
+.... . ..+.++ ..+..++++++|+++++...++.|.+||. +++.+..+..+.. .+..++|+|++
T Consensus 214 ~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp TSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCC
Confidence 22211 1 112222 46788999999998888888899999998 5666666654433 57899999998
Q ss_pred CEEEEEEC
Q 000961 303 NLLAAGHD 310 (1208)
Q Consensus 303 ~~la~g~~ 310 (1208)
..|.+++.
T Consensus 292 ~~L~v~~~ 299 (333)
T 2dg1_A 292 NQLIICSN 299 (333)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEeC
Confidence 76665543
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=5.2e-14 Score=162.01 Aligned_cols=249 Identities=8% Similarity=0.019 Sum_probs=176.4
Q ss_pred CCCEEEEEEeCCCCEEEEEe---------cCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC---C--e
Q 000961 9 SNRVKGLSFHSKRPWILASL---------HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---Y--K 74 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~---------~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g--~ 74 (1208)
-..+...++ ||++++... .++.|.+||+.+++... + ..+..++|||+|++|+.++.+ + .
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 355778888 899888753 25679999998886543 3 568899999999999987653 3 4
Q ss_pred EEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC---------------------------CcEEEEECCCCeE
Q 000961 75 IKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD---------------------------QTIRIWNWQSRTC 127 (1208)
Q Consensus 75 I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D---------------------------g~I~iwd~~s~~~ 127 (1208)
|.+|++.+++.......+ . +..+.|+||++.|+.++.+ ..|.+||+.+++.
T Consensus 87 l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 87 IWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred EEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 888898888766554433 3 9999999999999888642 5799999999887
Q ss_pred EEEEecCCCCEEEEEEeeCCCEEEEEECCC-------eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 128 ISVLTGHNHYVMCASFHPKEDLVVSASLDQ-------TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 128 i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg-------~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
+..+.. . .+..+.|+|+| ++++++.++ ...+|.+.+.+. . .+
T Consensus 165 ~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---------------------------~-~l 213 (347)
T 2gop_A 165 IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---------------------------E-KM 213 (347)
T ss_dssp EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---------------------------E-EE
T ss_pred EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---------------------------E-Ee
Confidence 555554 3 78899999999 777776542 334444332111 1 11
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEEeecCcCCCeEE-EEEccCCCEEEEEeCCCc
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADD--------RQVKLWRMNETKAWEVDTLRGHMNNVSC-VMFHAKQDIIVSNSEDKS 271 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~d--------g~I~iwd~~~~~~~~~~~l~~h~~~V~~-l~~sp~g~~l~sgs~dg~ 271 (1208)
..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++. ......+...+.. +.|+ ++ ++++++.++.
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~--~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~ 284 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV--MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS 284 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE--EESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce--EeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence 222 344444 9999988887754 3677787 4443 3344556777886 9999 88 8899999999
Q ss_pred EEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 272 IRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 272 I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
+++| +.+++... +..+...+..++++| .++++++.
T Consensus 285 ~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~ 319 (347)
T 2gop_A 285 VNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKET 319 (347)
T ss_dssp EEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEEC
T ss_pred EEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcC
Confidence 9999 87665543 334466788999999 55555543
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=5.1e-15 Score=186.88 Aligned_cols=288 Identities=12% Similarity=0.022 Sum_probs=192.8
Q ss_pred EecccccCEEEEEEEcCCCEEEEE--ECCCeEEEEECCCCeEEEEEccCCCCEE---------EEEEc--CCCCE-EEEE
Q 000961 46 RFDEHDGPVRGVHFHKSQPLFVSG--GDDYKIKVWNYKMHRCLFTLLGHLDYIR---------TVQFH--HEYPW-IVSA 111 (1208)
Q Consensus 46 ~l~~h~~~V~~l~fsp~~~~Lasg--s~Dg~I~vWd~~~~~~~~~l~~h~~~I~---------~v~fs--~d~~~-l~s~ 111 (1208)
.+.+|...|..++|++++-++++. +.++...||....+.....+..|...+. ...|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 455788999999999887777777 5588999999765566677777776666 66666 99998 7766
Q ss_pred EC-CCcEEEEECC--CCeEEEEEec-----CCCCEEEEEEeeCCCEEEEEECC----------CeEEEEECCC------C
Q 000961 112 SD-DQTIRIWNWQ--SRTCISVLTG-----HNHYVMCASFHPKEDLVVSASLD----------QTVRVWDIGA------L 167 (1208)
Q Consensus 112 s~-Dg~I~iwd~~--s~~~i~~l~~-----h~~~V~~l~~~p~~~~l~s~s~D----------g~V~vwdl~~------~ 167 (1208)
+. +..|.+|+.. +......+.. |...+.+++|+|+|+.|++++.+ ..|.+||+.+ .
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 54 5667777765 2033455555 66788999999999999998877 5899999876 2
Q ss_pred ccccccCCCcceeeccccccccccccceEEEEEe-ccCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CCc
Q 000961 168 RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHPTLPLIVSGADD--------RQVKLWRMN-ETK 237 (1208)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~L~sgs~d--------g~I~iwd~~-~~~ 237 (1208)
... .+. .+...+..++|+|||++|+.++.+ ..|++||+. ++.
T Consensus 178 ~~~----------------------------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 178 AVR----------------------------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp GSE----------------------------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred cee----------------------------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 221 122 344566778999999999988755 379999998 452
Q ss_pred eeEEEe-ecCcCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCeeEEEeecCCCC--------EEEEEEeCCCCEEE
Q 000961 238 AWEVDT-LRGHMNNVSCVMFHAKQDIIVSNSEDK--SIRVWDVTKRTGVQTFRREHDR--------FWILASHPEMNLLA 306 (1208)
Q Consensus 238 ~~~~~~-l~~h~~~V~~l~~sp~g~~l~sgs~dg--~I~vwd~~~~~~~~~~~~~~~~--------i~~la~sp~~~~la 306 (1208)
...... ..+|...+..+.|+|||+++++++.++ .|.+||..+++.......+... +..++++|++.+++
T Consensus 230 ~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 230 FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence 111233 344578899999999999888888888 6777777666654433322211 34567777777766
Q ss_pred EEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEE--EccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEE
Q 000961 307 AGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYY--EFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICS 384 (1208)
Q Consensus 307 ~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~--d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~ 384 (1208)
++.. +.+++| |..+++. ..+... ...+..+ ++++++.+++.+
T Consensus 310 ~~~~---------------------------~~~~l~~~d~~~~~~---~~l~~~-----~~~~~~~-~s~~~~~~~~~~ 353 (662)
T 3azo_A 310 VHGK---------------------------GAAVLGILDPESGEL---VDAAGP-----WTEWAAT-LTVSGTRAVGVA 353 (662)
T ss_dssp EEBS---------------------------SSCEEEEEETTTTEE---EECCSS-----CCEEEEE-EEEETTEEEEEE
T ss_pred EEEc---------------------------CccEEEEEECCCCcE---EEecCC-----CCeEEEE-EecCCCEEEEEE
Confidence 6653 334445 5544442 222211 1144444 166777777766
Q ss_pred ecCCCEEEEEEcc
Q 000961 385 DVDGGSYELYVIP 397 (1208)
Q Consensus 385 ~~~~g~v~l~~l~ 397 (1208)
.+.+....+|.++
T Consensus 354 ~~~~~~~~i~~~d 366 (662)
T 3azo_A 354 ASPRTAYEVVELD 366 (662)
T ss_dssp EETTEEEEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 6566666666654
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=1.2e-12 Score=146.64 Aligned_cols=280 Identities=8% Similarity=-0.020 Sum_probs=202.6
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEE-ecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCC
Q 000961 5 FETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDR-FDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 5 l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~-l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~ 83 (1208)
+..+...+.+++++++|.+.++...++.|.+||.. ++.... ...+...+.++++++++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 45567889999999999977766667899999987 654332 23355779999999999988887778899999986 3
Q ss_pred eE-EEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 84 RC-LFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 84 ~~-~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~-l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
+. ...+..+...+..+++.+++..+++...++.|.+||. +++.... ...+...+.++++.++++..++...++.|..
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR 166 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence 32 2222234567999999999987777777889999998 5554432 2334567899999999987777666789999
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~ 241 (1208)
||. +.+... .....+...+..++++++|.+.++...++.|.+|+. +++.. .
T Consensus 167 ~~~-~g~~~~--------------------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~ 217 (299)
T 2z2n_A 167 ITE-SGDITE--------------------------FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-E 217 (299)
T ss_dssp ECT-TCCEEE--------------------------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-E
T ss_pred EcC-CCcEEE--------------------------eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-E
Confidence 997 432211 112233456788999999997777767889999999 55532 2
Q ss_pred EeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe--ecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeC
Q 000961 242 DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTF--RREHDRFWILASHPEMNLLAAGHDSGMIVFKLE 319 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~--~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~ 319 (1208)
.....+...+.+++++++|++.++...++.|..||. ++.. ..+ ......+.++++ ++++++++...+++..++..
T Consensus 218 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 218 FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLI 294 (299)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC
T ss_pred EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcC
Confidence 233445677999999999997777667789999998 4543 333 233456888999 88888777665666665543
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=2e-13 Score=152.55 Aligned_cols=238 Identities=13% Similarity=0.192 Sum_probs=175.1
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEc------cCCCCEEEEEE-cCCCCEEEEEEC-CCcEEEE
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL------GHLDYIRTVQF-HHEYPWIVSASD-DQTIRIW 120 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~------~h~~~I~~v~f-s~d~~~l~s~s~-Dg~I~iw 120 (1208)
++-....++++++++.++++.+.++.|.+||.. ++.+..+. +|...+..+++ .+++..+++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 66666663 24467899999 467765555533 8899999
Q ss_pred ECCCCeEEEEEe-cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEE
Q 000961 121 NWQSRTCISVLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1208)
Q Consensus 121 d~~s~~~i~~l~-~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1208)
| .+++.+..+. .+...+.+++++|+++++++...++.|.+||..+.... ...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~--------------------------~~~ 158 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH--------------------------KFG 158 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE--------------------------EEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE--------------------------EeC
Confidence 9 5677776664 34467899999999998777777899999996542110 001
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec--CcCCCeEEEEEccCCCEEEEEeCCC-cEEEEe
Q 000961 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDK-SIRVWD 276 (1208)
Q Consensus 200 ~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~~sp~g~~l~sgs~dg-~I~vwd 276 (1208)
...+...+..++++|+|+++++...++.|++|+..... +..+. ++...+..++++|+|+++++...++ .|.+||
T Consensus 159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 11344568899999999988877789999999986543 33443 3346789999999999888888776 999999
Q ss_pred CCCCeeEEEeecCC--CCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961 277 VTKRTGVQTFRREH--DRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 277 ~~~~~~~~~~~~~~--~~i~~la~sp~~~~la~g~~~gi~v~~l 318 (1208)
. +++.+..+..+. ..+..++++|+|+++++..++.+.+|++
T Consensus 236 ~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~ 278 (286)
T 1q7f_A 236 Q-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRY 278 (286)
T ss_dssp T-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEEC
T ss_pred C-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEc
Confidence 5 566666665443 3478999999998777754333444443
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=1.3e-12 Score=159.17 Aligned_cols=329 Identities=14% Similarity=0.032 Sum_probs=226.6
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECC--CCccccccCCCccee
Q 000961 103 HEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIG--ALRKKTVSPADDILR 180 (1208)
Q Consensus 103 ~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~--~~~~~~~~~~~~~~~ 180 (1208)
+.+..+++...+++|.++|..+++.+..+... ..+..+.|+|+|+++++++.|+.|.+||+. +.+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v---------- 233 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV---------- 233 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE----------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe----------
Confidence 33446677778899999999999999888743 357799999999999999999999999985 43221
Q ss_pred eccccccccccccceEEEEEeccCCCeEEEEEc----CCCCEEEEEeC-CCcEEEEECCCCceeEEEeecC--------c
Q 000961 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH----PTLPLIVSGAD-DRQVKLWRMNETKAWEVDTLRG--------H 247 (1208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s----p~g~~L~sgs~-dg~I~iwd~~~~~~~~~~~l~~--------h 247 (1208)
..+.. ......++|+ |+|++++++.. ++.|.++|..+.+........+ |
T Consensus 234 -----------------~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~ 295 (567)
T 1qks_A 234 -----------------AEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH 295 (567)
T ss_dssp -----------------EEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE
T ss_pred -----------------EEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc
Confidence 11221 2235689999 69998887764 6899999998887633222221 2
Q ss_pred CC-CeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCeeEEEee-cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcce
Q 000961 248 MN-NVSCVMFHAKQDI-IVSNSEDKSIRVWDVTKRTGVQTFR-REHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPA 324 (1208)
Q Consensus 248 ~~-~V~~l~~sp~g~~-l~sgs~dg~I~vwd~~~~~~~~~~~-~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~ 324 (1208)
.. .+..+..++++.. ++....+|.|.++|..+...+.... ........+.|+|+++++.++..
T Consensus 296 p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~-------------- 361 (567)
T 1qks_A 296 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-------------- 361 (567)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG--------------
T ss_pred CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC--------------
Confidence 22 5788888887665 4455567999999987754332222 22345677889999998877653
Q ss_pred EEecCCEEEEEeCCeEEEEEccCCcceeeEee-cCCCCCCCCcCCeEEE-EcCCCCEEEEEEecCCCEEEEEEccCCCC-
Q 000961 325 FAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI-RRPGSTSLNQSPRTLS-YSPTENAVLICSDVDGGSYELYVIPKDSI- 401 (1208)
Q Consensus 325 ~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~i~~l~-~spdg~~llv~~~~~~g~v~l~~l~~~~~- 401 (1208)
.++.|.++|..+++......+ ....| +-+... ++|++..+.+++...++.|.+++......
T Consensus 362 -----------~sn~V~ViD~~t~kl~~~i~vgg~~Ph-----pg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 362 -----------ARNKLVVIDTKEGKLVAIEDTGGQTPH-----PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp -----------GGTEEEEEETTTTEEEEEEECSSSSBC-----CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred -----------CCCeEEEEECCCCcEEEEEeccCcCCC-----CccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 367788999999887666655 33222 212333 57887777666554567999999875321
Q ss_pred ---CCCcccccccCCceEEEEEEeCCcEEEEEcC-------CCEEEEEecCCc-----e--eeeec---------CCcce
Q 000961 402 ---GRGDSVQDAKKGLGGSAIFIARNRFAVLDKS-------SNQVLVKNLKNE-----V--VKKSI---------LPIAA 455 (1208)
Q Consensus 402 ---~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~~-------dg~I~Iwdl~~~-----~--~~~l~---------~~~~v 455 (1208)
.+....+.........+..+|+++++..... .++|.|+|+.+. . ...+. ....+
T Consensus 426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (567)
T 1qks_A 426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV 505 (567)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcce
Confidence 1222223322222345778999998888662 358999999843 1 13332 12378
Q ss_pred EEEEEeCCccEEEEe-------CCeEEEEEcCCCeEEEEEeC
Q 000961 456 DAIFYAGTGNLLCRA-------EDRVVIFDLQQRLVLGDLQT 490 (1208)
Q Consensus 456 ~~i~~s~dg~~Las~-------dg~v~lwdl~~~~~l~~~~~ 490 (1208)
..+.|+++|+.+.++ ++.|.++|..+++++..+..
T Consensus 506 ~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 506 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 999999999887443 58999999999999988875
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2.2e-13 Score=173.24 Aligned_cols=281 Identities=11% Similarity=0.047 Sum_probs=195.3
Q ss_pred CCCCEEEEEecCC-----eEEEEECCCCeEEEEe------cccccCEEEEEEEcCCCEEEEEECCC-----eEEEEECCC
Q 000961 19 SKRPWILASLHSG-----VIQLWDYRMGTLIDRF------DEHDGPVRGVHFHKSQPLFVSGGDDY-----KIKVWNYKM 82 (1208)
Q Consensus 19 pdg~~Lasg~~dg-----~I~iWd~~~g~~i~~l------~~h~~~V~~l~fsp~~~~Lasgs~Dg-----~I~vWd~~~ 82 (1208)
|+|++++....++ .|.+.+...++....+ .+|...+.+++|||||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8999888765432 4455554445433222 23445789999999999999876543 899999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCc----------------EEEEECCCCeE----EEEEecCCCCEEEEE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQT----------------IRIWNWQSRTC----ISVLTGHNHYVMCAS 142 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~----------------I~iwd~~s~~~----i~~l~~h~~~V~~l~ 142 (1208)
++.......+. .+..++|+|||+.|+.++.++. |++|++.+++. +.....|...+..+.
T Consensus 161 g~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 98776433222 2667999999999999988766 99999988762 222233566788999
Q ss_pred EeeCCCEEEEEEC-----CCeEEEEECCC------CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE
Q 000961 143 FHPKEDLVVSASL-----DQTVRVWDIGA------LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1208)
Q Consensus 143 ~~p~~~~l~s~s~-----Dg~V~vwdl~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (1208)
|+|+|++|+.++. +..|.+||+.+ .... ...+..+...+.. .
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--------------------------~~~l~~~~~~~~~-~ 292 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK--------------------------WVKLIDNFEGEYD-Y 292 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC--------------------------CEEEECSSSSCEE-E
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc--------------------------eEEeeCCCCcEEE-E
Confidence 9999999988775 56899999865 2100 0123344444444 5
Q ss_pred EcCCCCEEEEEeCC----CcEEEEECCCCceeEEEeecCcCC--CeEEEEEccCCCEEEEEeCCCc--EEEEeCCCCeeE
Q 000961 212 FHPTLPLIVSGADD----RQVKLWRMNETKAWEVDTLRGHMN--NVSCVMFHAKQDIIVSNSEDKS--IRVWDVTKRTGV 283 (1208)
Q Consensus 212 ~sp~g~~L~sgs~d----g~I~iwd~~~~~~~~~~~l~~h~~--~V~~l~~sp~g~~l~sgs~dg~--I~vwd~~~~~~~ 283 (1208)
|+|+|..|+..+.. +.|.+|++.++.......+..|.. .+..+.|++++.++++...++. |.+|++.+++.+
T Consensus 293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~ 372 (710)
T 2xdw_A 293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL 372 (710)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE
Confidence 88899888777653 369999998764101233444433 6888999988888888888884 667787678777
Q ss_pred EEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCc
Q 000961 284 QTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQK 349 (1208)
Q Consensus 284 ~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~ 349 (1208)
..+..+.+.+..++++|++..++....+.. ..+.+..||+.+++
T Consensus 373 ~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~----------------------~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 373 KIFPLEVGSVVGYSGQKKDTEIFYQFTSFL----------------------SPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECCCSSEEEEEECCTTCSEEEEEEECSS----------------------CCCEEEEEETTSSS
T ss_pred EecCCCCceEEEEecCCCCCEEEEEEeCCC----------------------CCCEEEEEECCCCc
Confidence 777777777888999998876665432211 36778899988776
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=1.6e-13 Score=156.88 Aligned_cols=240 Identities=12% Similarity=0.072 Sum_probs=174.0
Q ss_pred ccCEEEEEEEcCCCEEEEEECC------------------------CeEEEEECCCCeEEEEEc-cCCCCEEEEEEcCCC
Q 000961 51 DGPVRGVHFHKSQPLFVSGGDD------------------------YKIKVWNYKMHRCLFTLL-GHLDYIRTVQFHHEY 105 (1208)
Q Consensus 51 ~~~V~~l~fsp~~~~Lasgs~D------------------------g~I~vWd~~~~~~~~~l~-~h~~~I~~v~fs~d~ 105 (1208)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+. ++......+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888777 479999999898877664 455689999999999
Q ss_pred CEEEEEECCCcEEEEECCCCe-EEEEE---------ecCCCCEEEEEEee-CCCEEEEEE-CCCeEEEEECCCCcccccc
Q 000961 106 PWIVSASDDQTIRIWNWQSRT-CISVL---------TGHNHYVMCASFHP-KEDLVVSAS-LDQTVRVWDIGALRKKTVS 173 (1208)
Q Consensus 106 ~~l~s~s~Dg~I~iwd~~s~~-~i~~l---------~~h~~~V~~l~~~p-~~~~l~s~s-~Dg~V~vwdl~~~~~~~~~ 173 (1208)
+.+++.+.++.|++||..... .+..+ .++...+..++++| +++++++.+ .++.|++|+..+......
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~- 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQW- 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEE-
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEe-
Confidence 988888888999999976542 45555 24455789999999 778777776 689999999543211100
Q ss_pred CCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeE
Q 000961 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVS 252 (1208)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~ 252 (1208)
. .. +.... ...++-.....++++|+ +.++++...++.|++|+..+++.........+...+.
T Consensus 182 ~--------~~-----g~~~~----~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~ 244 (329)
T 3fvz_A 182 G--------EE-----SSGSS----PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF 244 (329)
T ss_dssp C--------EE-----CCSSS----CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred c--------cC-----CCCCC----CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence 0 00 00000 00112234789999998 7777777789999999999777633333345677889
Q ss_pred EEEEccCCCEEEEE-------eCCCcEEEEeCCCCeeEEEee---cCCCCEEEEEEeCCCCEEEEEE
Q 000961 253 CVMFHAKQDIIVSN-------SEDKSIRVWDVTKRTGVQTFR---REHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 253 ~l~~sp~g~~l~sg-------s~dg~I~vwd~~~~~~~~~~~---~~~~~i~~la~sp~~~~la~g~ 309 (1208)
+++|+| +..+.+. ..+..|++||..+++.+..+. .+......++++|+|+++++..
T Consensus 245 ~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 245 AISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp EEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred eeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC
Confidence 999999 4333333 344589999999999988874 4556689999999997666655
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=1.9e-13 Score=153.76 Aligned_cols=246 Identities=10% Similarity=0.009 Sum_probs=180.3
Q ss_pred ceEeecCCCCEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 2 LTKFETKSNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 2 l~~l~~h~~~V~~lafspdg~-~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
+..+..+.....+++|+|+|+ +++++..++.|..||..++ ...+..+...+.+++|+|+|.++++...++.|.+||.
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 345667778889999999998 7778888999999998877 6667677888999999999998887777789999999
Q ss_pred CCCeEEEEEccC----CCCEEEEEEcCCCCEEEEEEC-----------------CCcEEEEECCCCeEEEEEecCCCCEE
Q 000961 81 KMHRCLFTLLGH----LDYIRTVQFHHEYPWIVSASD-----------------DQTIRIWNWQSRTCISVLTGHNHYVM 139 (1208)
Q Consensus 81 ~~~~~~~~l~~h----~~~I~~v~fs~d~~~l~s~s~-----------------Dg~I~iwd~~s~~~i~~l~~h~~~V~ 139 (1208)
.+++........ ...+..++++|+|.++++.+. .+.|..++.. ++ +..+..+.....
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN 175 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence 888765443221 234667999999998877321 2456566654 44 344555667789
Q ss_pred EEEEeeCCCEEEEEECCCeEEEEECCC-CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCE
Q 000961 140 CASFHPKEDLVVSASLDQTVRVWDIGA-LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218 (1208)
Q Consensus 140 ~l~~~p~~~~l~s~s~Dg~V~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 218 (1208)
.++|+|+++.+++.+.++.|.+|++.. +.... ....+..+...+..++++++|++
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~------------------------~~~~~~~~~~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEY------------------------QGVHFTVEPGKTDGLRVDAGGLI 231 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEE------------------------EEEEECCSSSCCCSEEEBTTSCE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC------------------------CCeEeeCCCCCCCeEEECCCCCE
Confidence 999999999887777789999999862 11100 00111234455677999999986
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEE-ccCCCEEEEEeCCCcEEEEeCCCCee
Q 000961 219 IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF-HAKQDIIVSNSEDKSIRVWDVTKRTG 282 (1208)
Q Consensus 219 L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~-sp~g~~l~sgs~dg~I~vwd~~~~~~ 282 (1208)
.++. ++.|.+|+.. ++. +..+..+.. +++++| +|+++.|++++.++ +.-++..+.+.
T Consensus 232 ~v~~--~~~v~~~~~~-g~~--~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 232 WASA--GDGVHVLTPD-GDE--LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEE--TTEEEEECTT-SCE--EEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEc--CCeEEEECCC-CCE--EEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 6665 7889999987 443 555666666 899999 58999999888764 55667665544
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=1.8e-13 Score=174.04 Aligned_cols=245 Identities=9% Similarity=0.040 Sum_probs=179.5
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCC-----eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCe--------
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSG-----VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYK-------- 74 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg-----~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~-------- 74 (1208)
|...+.+++|||||++||.+..++ .|++||+.+|+.+.....+ ..+.+++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999999876543 8999999999877643222 33678999999999999887765
Q ss_pred --------EEEEECCCCe----EEEEEccCCCCEEEEEEcCCCCEEEEEEC-----CCcEEEEECCC------Ce-EEEE
Q 000961 75 --------IKVWNYKMHR----CLFTLLGHLDYIRTVQFHHEYPWIVSASD-----DQTIRIWNWQS------RT-CISV 130 (1208)
Q Consensus 75 --------I~vWd~~~~~----~~~~l~~h~~~I~~v~fs~d~~~l~s~s~-----Dg~I~iwd~~s------~~-~i~~ 130 (1208)
|++|++.+++ .+.....|...+..+.|+|||++|+.++. +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 9999998875 33333335667889999999999988765 56899999976 43 4566
Q ss_pred EecCCCCEEEEEEeeCCCEEEEEECC----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc-C-
Q 000961 131 LTGHNHYVMCASFHPKEDLVVSASLD----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-D- 204 (1208)
Q Consensus 131 l~~h~~~V~~l~~~p~~~~l~s~s~D----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~- 204 (1208)
+..+...+.. .|+|+|+.|+..+.. +.|.+||+.+..... .. .+..| .
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~------------------------~~-~l~~~~~~ 335 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK------------------------WK-VLVPEHEK 335 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG------------------------CE-EEECCCSS
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc------------------------ce-eccCCCCC
Confidence 6666666655 488999888877653 369999987643210 01 12223 2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCc--EEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEe----CCCcEEEEeCC
Q 000961 205 RGVNWAAFHPTLPLIVSGADDRQ--VKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNS----EDKSIRVWDVT 278 (1208)
Q Consensus 205 ~~V~~l~~sp~g~~L~sgs~dg~--I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs----~dg~I~vwd~~ 278 (1208)
..+..++|++++.++++...++. |.+|++.+++. +..+..+.+.+..+.++|+++.++... ..++|..||+.
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~--~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL--LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE--EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE--EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 35778899988888888888885 56667756654 456666777889999999987666432 34689999998
Q ss_pred CCe
Q 000961 279 KRT 281 (1208)
Q Consensus 279 ~~~ 281 (1208)
+++
T Consensus 414 tg~ 416 (710)
T 2xdw_A 414 KEE 416 (710)
T ss_dssp SSS
T ss_pred CCc
Confidence 776
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=8.5e-13 Score=148.33 Aligned_cols=243 Identities=12% Similarity=0.022 Sum_probs=176.4
Q ss_pred CeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEE
Q 000961 41 GTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRI 119 (1208)
Q Consensus 41 g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~i 119 (1208)
+..+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.++++++++.++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 334455555666788999999998 7788888999999999877 5666677888999999999998777767789999
Q ss_pred EECCCCeEEEEEecC----CCCEEEEEEeeCCCEEEEEEC-----------------CCeEEEEECCCCccccccCCCcc
Q 000961 120 WNWQSRTCISVLTGH----NHYVMCASFHPKEDLVVSASL-----------------DQTVRVWDIGALRKKTVSPADDI 178 (1208)
Q Consensus 120 wd~~s~~~i~~l~~h----~~~V~~l~~~p~~~~l~s~s~-----------------Dg~V~vwdl~~~~~~~~~~~~~~ 178 (1208)
||..+++........ ...+..++++|+|+++++.+. .+.|..++.. .+
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---------- 163 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---------- 163 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC----------
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC----------
Confidence 999888765443221 234567999999998887321 2344444433 11
Q ss_pred eeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCce-eEEEeecCcCCCeEEEEE
Q 000961 179 LRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKA-WEVDTLRGHMNNVSCVMF 256 (1208)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~-~~~~-~~~~~l~~h~~~V~~l~~ 256 (1208)
. ..+..+....+.++|+|+++.+++.+.++.|.+|++. ++.. .....+..+...+.++++
T Consensus 164 -----------------~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~ 225 (296)
T 3e5z_A 164 -----------------L-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV 225 (296)
T ss_dssp -----------------E-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred -----------------E-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence 1 1223455667899999999988777778999999987 4432 112222345566788999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEE-eCCCCEEEEEECCCeeeEee
Q 000961 257 HAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS-HPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 257 sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~-sp~~~~la~g~~~gi~v~~l 318 (1208)
+++|++.++. ++.|.+||.. ++.+..+..+.. +.+++| +|+++.|.+++.+++..++.
T Consensus 226 d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~ 284 (296)
T 3e5z_A 226 DAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIET 284 (296)
T ss_dssp BTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEEC
T ss_pred CCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEc
Confidence 9999976666 7889999986 777777776666 888999 58888888887665444433
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=2.2e-13 Score=156.82 Aligned_cols=233 Identities=7% Similarity=0.082 Sum_probs=162.9
Q ss_pred CCEEEEEEeCCCCEEEEEecC---C--eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC------------
Q 000961 10 NRVKGLSFHSKRPWILASLHS---G--VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD------------ 72 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~d---g--~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D------------ 72 (1208)
..+.+++|||||++|+.++.+ + .|.+||+.+++....... .. +..++|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357789999999999988654 3 488889888876655443 34 9999999999998887632
Q ss_pred ---------------CeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC-------cEEEEECCCCeEEEE
Q 000961 73 ---------------YKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ-------TIRIWNWQSRTCISV 130 (1208)
Q Consensus 73 ---------------g~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg-------~I~iwd~~s~~~i~~ 130 (1208)
..|.+||+.+++.+..+.. . .+..+.|+|++ .+++++.++ ...||.+.+++.. .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-K 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-E
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-E
Confidence 5799999998887455554 3 78899999999 777776542 3444444455543 3
Q ss_pred EecCCCCEEEEEEeeCCCEEEEEECC--------CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 131 LTGHNHYVMCASFHPKEDLVVSASLD--------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 131 l~~h~~~V~~l~~~p~~~~l~s~s~D--------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +.+.. ....+
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~---------------------------~l~~~ 260 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM---------------------------GILDE 260 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE---------------------------ESSTT
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE---------------------------ecccc
Confidence 4434 555544 9999988887754 3677777 32211 12234
Q ss_pred cCCCeEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcE-EEEeCCCC
Q 000961 203 HDRGVNW-AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSI-RVWDVTKR 280 (1208)
Q Consensus 203 h~~~V~~-l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I-~vwd~~~~ 280 (1208)
+...+.. +.|+ ++ ++++++.++.+++| +.+++ ...+..+...|.+++|+| .++++++.++.. .+|.+. +
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~---~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g 331 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE---IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-G 331 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS---EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-S
T ss_pred CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc---eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-C
Confidence 4566775 8999 88 88999999999999 87554 333444577899999999 677777777664 677665 4
Q ss_pred eeEEEeecCC
Q 000961 281 TGVQTFRREH 290 (1208)
Q Consensus 281 ~~~~~~~~~~ 290 (1208)
+ ...+..++
T Consensus 332 ~-~~~lt~~n 340 (347)
T 2gop_A 332 E-EKQLTDYN 340 (347)
T ss_dssp S-EEECCCTT
T ss_pred c-EEEecccc
Confidence 4 33444443
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.55 E-value=2.5e-13 Score=172.18 Aligned_cols=279 Identities=10% Similarity=-0.067 Sum_probs=184.9
Q ss_pred EeCCCCEEEEEecCC-----eEEEEECCCCeEEEEe------cccccCEEEEEEEcCCCEEEE-----EECCCeEEEEEC
Q 000961 17 FHSKRPWILASLHSG-----VIQLWDYRMGTLIDRF------DEHDGPVRGVHFHKSQPLFVS-----GGDDYKIKVWNY 80 (1208)
Q Consensus 17 fspdg~~Lasg~~dg-----~I~iWd~~~g~~i~~l------~~h~~~V~~l~fsp~~~~Las-----gs~Dg~I~vWd~ 80 (1208)
.+|+|++++....++ .|.+.+...+.....+ .+|...+.+++|||||++|+. |+++..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 348899988776543 3444454455433322 245667999999999999984 344578999999
Q ss_pred CCCeEEEEEccCCCCE--EEEEEcCCCCEEEEEECCCc-------------EEEEECCCCe----EEEEEecCCCCEEEE
Q 000961 81 KMHRCLFTLLGHLDYI--RTVQFHHEYPWIVSASDDQT-------------IRIWNWQSRT----CISVLTGHNHYVMCA 141 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I--~~v~fs~d~~~l~s~s~Dg~-------------I~iwd~~s~~----~i~~l~~h~~~V~~l 141 (1208)
.+++.+. ..+...+ ..++|+|||+.|+.++.|.. |++|++.++. .+.....|...+.++
T Consensus 155 ~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 155 DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 9988641 1122222 67999999999999998776 9999998876 333334466789999
Q ss_pred EEeeCCCEEEEEECCC----eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCC
Q 000961 142 SFHPKEDLVVSASLDQ----TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLP 217 (1208)
Q Consensus 142 ~~~p~~~~l~s~s~Dg----~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~ 217 (1208)
.|+|+|++|+.++.++ .|.+|+..+.... .+..+...+....+ ++|.
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~----------------------------~l~~~~~~~~~~~~-~~g~ 283 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR----------------------------LLVKGVGAKYEVHA-WKDR 283 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE----------------------------EEEECSSCCEEEEE-ETTE
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE----------------------------EeecCCCceEEEEe-cCCc
Confidence 9999999888877665 5666654332211 23334445556666 5555
Q ss_pred EEEEEeC----CCcEEEEECCCCceeEEEeec-Cc-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEeecC-
Q 000961 218 LIVSGAD----DRQVKLWRMNETKAWEVDTLR-GH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT-KRTGVQTFRRE- 289 (1208)
Q Consensus 218 ~L~sgs~----dg~I~iwd~~~~~~~~~~~l~-~h-~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~- 289 (1208)
++..+. ++.|.+|++.++.......+. .+ ...+..++|+ ++.++++...|+..++|.+. ++.....+..+
T Consensus 284 -l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~ 361 (695)
T 2bkl_A 284 -FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG 361 (695)
T ss_dssp -EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS
T ss_pred -EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC
Confidence 444443 578999999776520012222 22 4567888888 67788888999988887654 35555555544
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc
Q 000961 290 HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (1208)
Q Consensus 290 ~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~ 350 (1208)
...+..++++|++..++....+.. ..+++.+||+.+++.
T Consensus 362 ~~~v~~~~~s~d~~~l~~~~ss~~----------------------~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 362 VGAASNLMGLEDLDDAYYVFTSFT----------------------TPRQIYKTSVSTGKS 400 (695)
T ss_dssp SSEECCCBSCTTCSEEEEEEEETT----------------------EEEEEEEEETTTCCE
T ss_pred CeEEEEeecCCCCCEEEEEEcCCC----------------------CCCEEEEEECCCCcE
Confidence 455667778888776654432111 457788999988764
No 191
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=3.5e-12 Score=145.83 Aligned_cols=244 Identities=14% Similarity=0.106 Sum_probs=172.3
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC----CeEEEE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD----YKIKVW 78 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D----g~I~vW 78 (1208)
..+..+...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++|+|+++++++...+ +.|.+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence 3566777889999999999987788888999999998887665554567789999999999988877766 689999
Q ss_pred ECCCCeEEEEEc--cCCCCEEEEEEcCCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEE
Q 000961 79 NYKMHRCLFTLL--GHLDYIRTVQFHHEYPWIVSASD------DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150 (1208)
Q Consensus 79 d~~~~~~~~~l~--~h~~~I~~v~fs~d~~~l~s~s~------Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l 150 (1208)
|..++.....+. .+...+..++++|++..+++... .+.|..+|..+++..... .+...+..++|+|+++.+
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVL 196 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEE
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEE
Confidence 998776553333 34567999999999987776553 356666776655544332 233457899999999866
Q ss_pred EEE-ECCCeEEEEECCCC-ccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcE
Q 000961 151 VSA-SLDQTVRVWDIGAL-RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 228 (1208)
Q Consensus 151 ~s~-s~Dg~V~vwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I 228 (1208)
+.+ +.++.|.+||+.+. ..... + .......+.++ ..+..++++++|.++++...++.|
T Consensus 197 ~v~~~~~~~i~~~d~~~~g~~~~~----------------~---~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 197 WVTETTANRLHRIALEDDGVTIQP----------------F---GATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEE----------------E---EEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred EEEeCCCCeEEEEEecCCCcCccc----------------c---cceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEE
Confidence 554 45789999998531 11100 0 00000111122 356789999999988888888999
Q ss_pred EEEECCCCceeEEEeecCcC------CCeEEEEEccCCCEEEEEeCCC
Q 000961 229 KLWRMNETKAWEVDTLRGHM------NNVSCVMFHAKQDIIVSNSEDK 270 (1208)
Q Consensus 229 ~iwd~~~~~~~~~~~l~~h~------~~V~~l~~sp~g~~l~sgs~dg 270 (1208)
.+||.. ++. +..+..+. ..+.+++|+|+++.|++++.++
T Consensus 257 ~~~d~~-g~~--~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 257 LVFNKR-GYP--IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEECTT-SCE--EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEECCC-CCE--EEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 999985 443 33333332 2688999999987777666553
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=2.9e-12 Score=146.45 Aligned_cols=300 Identities=10% Similarity=0.039 Sum_probs=208.9
Q ss_pred EEEEeCCCCEEEEEec-----CCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEE----------CCCeEEEE
Q 000961 14 GLSFHSKRPWILASLH-----SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG----------DDYKIKVW 78 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~-----dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs----------~Dg~I~vW 78 (1208)
.....|+++++.+... ++.|.+.|..+++.+.++.....+ . ++++|+|+++.++. .++.|.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456789999998865 579999999999999999766666 4 99999999887765 36789999
Q ss_pred ECCCCeEEEEEccCC-------CCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCE
Q 000961 79 NYKMHRCLFTLLGHL-------DYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDL 149 (1208)
Q Consensus 79 d~~~~~~~~~l~~h~-------~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~ 149 (1208)
|..+.+.+.++.... .....+.|+|||++++++.. ++.|.++|..+++.+.++.... . ...+....+.
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~ 191 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDT 191 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCce
Confidence 999999988875321 24567999999999998874 6899999999999999886422 1 2233334467
Q ss_pred EEEEECCCeEEEEECCC-CccccccCCCcceeeccccccccccccceEEEEEeccCCCe-EEEEEc-CCCCEEEEEeCCC
Q 000961 150 VVSASLDQTVRVWDIGA-LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV-NWAAFH-PTLPLIVSGADDR 226 (1208)
Q Consensus 150 l~s~s~Dg~V~vwdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~s-p~g~~L~sgs~dg 226 (1208)
+++.+.||++.+.++.. ++...... ..+ ......+ ....|. ++|++++ .+.+|
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~------------~~~-----------~~~~~~~~~~~~~~~~dG~~~~-vs~~g 247 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHT------------EVF-----------HPEDEFLINHPAYSQKAGRLVW-PTYTG 247 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEEC------------CCC-----------SCTTSCBCSCCEEETTTTEEEE-EBTTS
T ss_pred eEEECCCCCEEEEECCCCCeEEEeec------------cee-----------ccccccccccceeEcCCCcEEE-EeCCC
Confidence 88889999999999876 33211000 000 0001111 113554 6775444 66689
Q ss_pred cEEEEECCCCceeEEEeec----------CcCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeeEEEe
Q 000961 227 QVKLWRMNETKAWEVDTLR----------GHMNNVSCVMFHAKQDIIVSNSE----------DKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 227 ~I~iwd~~~~~~~~~~~l~----------~h~~~V~~l~~sp~g~~l~sgs~----------dg~I~vwd~~~~~~~~~~ 286 (1208)
.|.+.|..+........+. ........++++|+++.+..... .+.|.+.|+.+++.+.++
T Consensus 248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i 327 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF 327 (386)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE
Confidence 9999999876532122221 01223345778999988877643 246999999999999888
Q ss_pred ecCCCCEEEEEEeCCCC-EEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCC
Q 000961 287 RREHDRFWILASHPEMN-LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLN 365 (1208)
Q Consensus 287 ~~~~~~i~~la~sp~~~-~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 365 (1208)
... .+++.+++++|++ +|.+... .++.|.++|..+++.+..+... +
T Consensus 328 ~vg-~~~~~lavs~D~~~~ly~tn~-------------------------~~~~VsViD~~t~k~~~~i~~~--~----- 374 (386)
T 3sjl_D 328 EMG-HEIDSINVSQDEKPLLYALST-------------------------GDKTLYIHDAESGEELRSVNQL--G----- 374 (386)
T ss_dssp EEE-EEECEEEECSSSSCEEEEEET-------------------------TTTEEEEEETTTCCEEEEECCC--C-----
T ss_pred ECC-CCcceEEECCCCCeEEEEEcC-------------------------CCCeEEEEECCCCcEEEEecCC--C-----
Confidence 754 3688999999986 5655442 3678889999998875544433 2
Q ss_pred cCCeEEEEcCC
Q 000961 366 QSPRTLSYSPT 376 (1208)
Q Consensus 366 ~~i~~l~~spd 376 (1208)
.+..|.+++|
T Consensus 375 -~p~~l~~s~d 384 (386)
T 3sjl_D 375 -HGPQVITTAD 384 (386)
T ss_dssp -SSCCEEEECC
T ss_pred -CCceeEECCc
Confidence 4456677765
No 193
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.52 E-value=1.8e-09 Score=138.91 Aligned_cols=503 Identities=9% Similarity=0.050 Sum_probs=307.8
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccc----cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHD----GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~----~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1208)
...|.++...++|.+. +|+.+| +..||..+++... +.... ..|.++...+++.+.+. +. +-|..||..+++
T Consensus 87 ~n~I~~i~~d~~g~lW-igT~~G-l~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~ 161 (795)
T 4a2l_A 87 NDISRIVKTDSQGRVW-IGTRDG-LSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLIS-TP-EGLIMFDIKESK 161 (795)
T ss_dssp CSCEEEEEECTTSCEE-EEESSC-EEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEE-ET-TEEEEEETTTTE
T ss_pred ccceeEEEECCCCCEE-EEeCCc-hheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEE-EC-CceEEEECCCCE
Confidence 4679999999988744 455555 8899987776443 32211 12889998888876654 44 458899987765
Q ss_pred EEEEEccC-CCC-EEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 85 CLFTLLGH-LDY-IRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 85 ~~~~l~~h-~~~-I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
......++ ... |.++...+++. |..++.++.|..|+..+++..... ..+...|.++...+++. |..++.++-+..
T Consensus 162 ~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~ 239 (795)
T 4a2l_A 162 FIDDSFSTAMHKTIASTLYRQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFL 239 (795)
T ss_dssp EECSSSCHHHHTCCEEEEEEETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEE
T ss_pred EEeccCCCCCCcceEEEEECCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEE
Confidence 43211111 113 88888887775 445666656899998877654321 12356788888887765 555665555888
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~ 241 (1208)
||..+.+........ ... ..-....|.++...++|.+. +|+.+ -|.+|+..+......
T Consensus 240 ~~~~~~~~~~~~~~~-------~~~-------------~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~ 297 (795)
T 4a2l_A 240 INPKTKEIKNYLHSP-------SNP-------------KSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASY 297 (795)
T ss_dssp EETTTTEEEEECCCT-------TCT-------------TSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEE
T ss_pred EeCCCCeEEEeecCC-------CCc-------------cccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEE
Confidence 997664322110000 000 00123568899999888744 45555 488999887764211
Q ss_pred Eee-----cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec-------CCCCEEEEEEeCCCCEEEEEE
Q 000961 242 DTL-----RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR-------EHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 242 ~~l-----~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~-------~~~~i~~la~sp~~~~la~g~ 309 (1208)
... .-....|.++...++|. |..|+.++-|..|+..++... .+.. ....|.++...++|++.+...
T Consensus 298 ~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~ 375 (795)
T 4a2l_A 298 SSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTN 375 (795)
T ss_dssp CCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEES
T ss_pred ecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 111 11235799999998887 556777677999986554322 2221 245699999999999877666
Q ss_pred CCCeeeEeeCCCcc------------------e--EEe-cCCE-EEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCc
Q 000961 310 DSGMIVFKLERERP------------------A--FAV-SGDS-LFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQ 366 (1208)
Q Consensus 310 ~~gi~v~~l~~~~~------------------~--~s~-~~~~-L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 366 (1208)
++|+..|+...... + +.. ..+. |+++ .++-+..+|..+++........... . ..
T Consensus 376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l--~-~~ 452 (795)
T 4a2l_A 376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQL--V-NE 452 (795)
T ss_dssp SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCC--S-CS
T ss_pred CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCc--C-CC
Confidence 66887775443211 1 111 1233 6666 4577889998876643322111101 1 22
Q ss_pred CCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCccc---ccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC
Q 000961 367 SPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSV---QDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (1208)
Q Consensus 367 ~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~---~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~ 443 (1208)
.|.++...++|... +++. + -+..|+............ .......+.++...++|++.+... +.|..|+..+
T Consensus 453 ~v~~i~~d~~g~lw-igt~--~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~ 526 (795)
T 4a2l_A 453 NVYAILPDGEGNLW-LGTL--S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEG 526 (795)
T ss_dssp CEEEEEECSSSCEE-EEES--S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEET
T ss_pred eeEEEEECCCCCEE-EEec--C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCC
Confidence 78888888888744 3333 2 366666543321111000 011234688888888888877665 4488888875
Q ss_pred ceeeeecC-------C-cceEEEEEeCCccEEEEeCCeEEEEEcCCCeEEEEEeC------CCeeEEEECCCCCEEEEEe
Q 000961 444 EVVKKSIL-------P-IAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQT------PFVKYVVWSNDMESVALLS 509 (1208)
Q Consensus 444 ~~~~~l~~-------~-~~v~~i~~s~dg~~Las~dg~v~lwdl~~~~~l~~~~~------~~v~~v~ws~dg~~la~~s 509 (1208)
... .+.. + ..|.+|...++|.+.+.+.+.+..||..+++.. .+.. ..|.++..+++|.. .+++
T Consensus 527 ~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~l-Wi~t 603 (795)
T 4a2l_A 527 LDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTREGFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRL-WLST 603 (795)
T ss_dssp TEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESSCEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCE-EEEE
T ss_pred CeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCCceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCE-EEEc
Confidence 443 3321 1 168899999999988887778999998777543 3322 45888888888874 4556
Q ss_pred CCeEEEEecCccceeeeec-------ceeeeeeEEecCCeEEEecCCeeeeE
Q 000961 510 KHAIIIASKKLVHQCTLHE-------TIRVKSGAWDDNGVFIYTTLNHIKYC 554 (1208)
Q Consensus 510 ~~~i~i~~~~~~~~~~~~e-------~~~iks~~wd~~~~~iy~t~~~i~y~ 554 (1208)
.++++.++.....+..... .....+...+.++.+.+.+.+.+.++
T Consensus 604 ~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~~ 655 (795)
T 4a2l_A 604 NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITTF 655 (795)
T ss_dssp TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEEEEE
T ss_pred CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCCceEEE
Confidence 7899999987766654432 11224555555677777776665554
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=6.1e-13 Score=147.03 Aligned_cols=241 Identities=8% Similarity=-0.029 Sum_probs=172.4
Q ss_pred CEEEEEEeCCCCEEE-EEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 11 RVKGLSFHSKRPWIL-ASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 11 ~V~~lafspdg~~La-sg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
...+++++++|++.+ +...++.|.+||..++........+...+.++++++++.++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 778999999999666 436788999999765543322223445678999999999666655 889999998765433222
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcc
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~ 169 (1208)
......+..+++.+++..+++...++.|.+|+..+.............+.+++++|+++++++...++.|.+||..+...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23346789999999998777777788999998665544332233334678899999998777666788999999876432
Q ss_pred ccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCC
Q 000961 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249 (1208)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~ 249 (1208)
.. ....+...+..++++++|.++++...++.|.+|+..+... ......+..
T Consensus 184 ~~---------------------------~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--~~~~~~~~~ 234 (270)
T 1rwi_B 184 VV---------------------------LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--TVLPFTGLN 234 (270)
T ss_dssp EE---------------------------CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--EECCCCSCS
T ss_pred Ee---------------------------ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--eeeccCCCC
Confidence 11 1112225678899999998777777788999999877653 222223346
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 000961 250 NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRT 281 (1208)
Q Consensus 250 ~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~ 281 (1208)
.+.+++++|+|+++++...++.|++++....+
T Consensus 235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 78999999999988888899999999987543
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.52 E-value=3.8e-11 Score=134.41 Aligned_cols=277 Identities=8% Similarity=-0.018 Sum_probs=196.9
Q ss_pred cCCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEE-EecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeE
Q 000961 7 TKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLID-RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~-~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1208)
.....+.+++++++|...++...++.|.+||.. ++... .+..+...+.++++++++.++++...++.|.+||.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345689999999999977777678999999987 65443 233344678999999999988877778899999987 554
Q ss_pred E-EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCEEEEEEeeCCCEEEEEECCCeEEEEE
Q 000961 86 L-FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV-LTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 86 ~-~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~-l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwd 163 (1208)
. ..+......+..+++.+++..+++...++.|..||.. ++.... +......+.++++.+++++.++...++.|..+|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 3 2223344679999999999877776668899999987 555432 333456789999999998666665678899998
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~ 243 (1208)
... +.. ......+...+..++++++|.+.++....+.|.+|+. ++... ...
T Consensus 174 ~~g-~~~--------------------------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~ 224 (300)
T 2qc5_A 174 NTG-KLE--------------------------EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS-EYD 224 (300)
T ss_dssp TTC-CEE--------------------------EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEE
T ss_pred CCC-cEE--------------------------EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE-EEE
Confidence 732 211 1112233456789999999987777667788999998 44431 222
Q ss_pred ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE-EeecCCCCEEEEEEeCCCCEEEEEECCCeeeEe
Q 000961 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQ-TFRREHDRFWILASHPEMNLLAAGHDSGMIVFK 317 (1208)
Q Consensus 244 l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~-~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~ 317 (1208)
...+...+.+++++++|++.++...++.|..||. +++... ........+.+++++++|+++++.. +++..++
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~i~~~~ 297 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-CKIGKLN 297 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-SEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-CceEEeC
Confidence 3445667899999999997777666789999998 444332 1222345678899999998776655 3544443
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=1.8e-13 Score=173.52 Aligned_cols=244 Identities=9% Similarity=-0.058 Sum_probs=171.4
Q ss_pred cCCCCEEEEEEeCCCCEEEEEe-----cCCeEEEEECCCCeEEEEecccccCE--EEEEEEcCCCEEEEEECCCe-----
Q 000961 7 TKSNRVKGLSFHSKRPWILASL-----HSGVIQLWDYRMGTLIDRFDEHDGPV--RGVHFHKSQPLFVSGGDDYK----- 74 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~-----~dg~I~iWd~~~g~~i~~l~~h~~~V--~~l~fsp~~~~Lasgs~Dg~----- 74 (1208)
+|...+.+++|||||++||.+. .+..|++||+.+|+.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4556789999999999999543 34689999999998651 1122222 68999999999999988766
Q ss_pred --------EEEEECCCCe----EEEEEccCCCCEEEEEEcCCCCEEEEEECCC----cEEEEECCCCeEEEEEecCCCCE
Q 000961 75 --------IKVWNYKMHR----CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ----TIRIWNWQSRTCISVLTGHNHYV 138 (1208)
Q Consensus 75 --------I~vWd~~~~~----~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg----~I~iwd~~s~~~i~~l~~h~~~V 138 (1208)
|++|++.++. ++.....|...+..+.|+|||++|++++.++ .|.+|+..+++. ..+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCce
Confidence 9999998775 4444445667899999999999998887666 677777655543 4444455566
Q ss_pred EEEEEeeCCCEEEEEEC----CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc-CCCeEEEEEc
Q 000961 139 MCASFHPKEDLVVSASL----DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH-DRGVNWAAFH 213 (1208)
Q Consensus 139 ~~l~~~p~~~~l~s~s~----Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s 213 (1208)
....| ++|+ ++..+. ++.|.+||+.+..... ....+..+ ...+..++|+
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~------------------------~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS------------------------WKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG------------------------CEEEECCCSSCEEEEEEEE
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC------------------------CeEEecCCCCCeEEEEEEE
Confidence 66666 5666 555553 5789999987643210 01122223 4457788888
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCceeEEEeecCc-CCCeEEEEEccCCCEEEEEe----CCCcEEEEeCCCCee
Q 000961 214 PTLPLIVSGADDRQVKLWRMN-ETKAWEVDTLRGH-MNNVSCVMFHAKQDIIVSNS----EDKSIRVWDVTKRTG 282 (1208)
Q Consensus 214 p~g~~L~sgs~dg~I~iwd~~-~~~~~~~~~l~~h-~~~V~~l~~sp~g~~l~sgs----~dg~I~vwd~~~~~~ 282 (1208)
++.++++...|+..++|.+. +++. ...+..+ .+.+..+.++|+++.++... ..++|++||+.+++.
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~~~g~~--~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVATLKGKP--VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTCCE--EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCe--eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66788888899988888655 2332 4445444 56778888999998776433 346899999987763
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=6.8e-12 Score=143.29 Aligned_cols=243 Identities=8% Similarity=-0.029 Sum_probs=173.1
Q ss_pred cCCeEEEEECCCCeEEEEec------ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEc
Q 000961 29 HSGVIQLWDYRMGTLIDRFD------EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFH 102 (1208)
Q Consensus 29 ~dg~I~iWd~~~g~~i~~l~------~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs 102 (1208)
.+++|.+||..+++....+. ........+.+. ++.++++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 37899999999998876552 122346778874 45566666678999999999999988885 45678999999
Q ss_pred CCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCC-----CCEEEEEEeeCCCEEEEEE--CCCeEEEEECCCCccccccC
Q 000961 103 HEYPWIVSAS-DDQTIRIWNWQSRTCISVLTGHN-----HYVMCASFHPKEDLVVSAS--LDQTVRVWDIGALRKKTVSP 174 (1208)
Q Consensus 103 ~d~~~l~s~s-~Dg~I~iwd~~s~~~i~~l~~h~-----~~V~~l~~~p~~~~l~s~s--~Dg~V~vwdl~~~~~~~~~~ 174 (1208)
+++ .++++. .++.|.+||..+++....+.... .....+++ ++..+++++ .++.|.++|..+.+...
T Consensus 93 ~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~--- 166 (328)
T 3dsm_A 93 SDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVD--- 166 (328)
T ss_dssp ETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEE---
T ss_pred CCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEE---
Confidence 998 455555 78999999999999887776433 14556777 345555555 48999999998755322
Q ss_pred CCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCceeEEEee
Q 000961 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD----------RQVKLWRMNETKAWEVDTL 244 (1208)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d----------g~I~iwd~~~~~~~~~~~l 244 (1208)
.+.. ......++++|+|++++++..+ +.|.++|..+.+. ...+
T Consensus 167 ------------------------~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--~~~~ 219 (328)
T 3dsm_A 167 ------------------------ELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV--EKQF 219 (328)
T ss_dssp ------------------------EEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--EEEE
T ss_pred ------------------------EEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE--EEEE
Confidence 1111 1234568899999877766554 7899999998875 3333
Q ss_pred cCc-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE--eecCCCCEEEEEEeC-CCCEEEEE
Q 000961 245 RGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT--FRREHDRFWILASHP-EMNLLAAG 308 (1208)
Q Consensus 245 ~~h-~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~--~~~~~~~i~~la~sp-~~~~la~g 308 (1208)
... ......++|+|+++++.++.. .|.+||..+++.... +.........++++| ++.++++.
T Consensus 220 ~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 220 KFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp ECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred ecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 321 246889999999999888765 899999988775321 111235688999999 55555554
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=1e-11 Score=137.83 Aligned_cols=220 Identities=10% Similarity=0.016 Sum_probs=169.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEccCC-CCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecC-CCCEE
Q 000961 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL-DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH-NHYVM 139 (1208)
Q Consensus 62 ~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~-~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h-~~~V~ 139 (1208)
.+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|+.++ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 45789999999999999999999999998776 5789999999999888 45788999998 89999998865 35788
Q ss_pred EEEEeeCCCEEEEEEC-CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCE
Q 000961 140 CASFHPKEDLVVSASL-DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218 (1208)
Q Consensus 140 ~l~~~p~~~~l~s~s~-Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 218 (1208)
++.+.|+|+.+++.+. ++.|..+|..+...... . ... ...++......+++.++|++
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~-~------~~~---------------~~~~~~~~~~~v~~~~~G~~ 138 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNMKGEVLSKT-E------FET---------------GIERPHAQFRQINKNKKGNY 138 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE-E------ECC---------------SCSSGGGSCSCCEECTTSCE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE-e------ccC---------------CCCcccccccCceECCCCCE
Confidence 9999999999999887 77787777643211110 0 000 00011123345678899999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCC------CC
Q 000961 219 IVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH------DR 292 (1208)
Q Consensus 219 L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~------~~ 292 (1208)
+++...++.|..||.. ++. +.++... ..+.++...++|+.+++++.++.|..+|..+++.+.++.... ..
T Consensus 139 lv~~~~~~~v~~~d~~-G~~--~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~ 214 (276)
T 3no2_A 139 LVPLFATSEVREIAPN-GQL--LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFF 214 (276)
T ss_dssp EEEETTTTEEEEECTT-SCE--EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSE
T ss_pred EEEecCCCEEEEECCC-CCE--EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccc
Confidence 9999999999999998 554 3344333 345677888999999999988899999999999999886432 12
Q ss_pred EEEEEEeCCCCEEEEEEC
Q 000961 293 FWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 293 i~~la~sp~~~~la~g~~ 310 (1208)
+..++..++|+++++...
T Consensus 215 ~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 215 VAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp EEEEEECTTSCEEEEEEC
T ss_pred cccceEcCCCCEEEEecc
Confidence 678889999999988753
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=6.5e-11 Score=137.27 Aligned_cols=283 Identities=10% Similarity=-0.027 Sum_probs=195.2
Q ss_pred EEeCCCCEEEEEec--CC---eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEE----------CCCeEEEEEC
Q 000961 16 SFHSKRPWILASLH--SG---VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG----------DDYKIKVWNY 80 (1208)
Q Consensus 16 afspdg~~Lasg~~--dg---~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs----------~Dg~I~vWd~ 80 (1208)
...|+++++.+... .+ .|.+||..+++.+.++.....+ .+++|||++++.++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 45578888887753 22 8899999999999888765555 999999999988875 3678999999
Q ss_pred CCCeEEEEEccC-------CCCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEE-EecCCCCEEEEEEeeCC-CE
Q 000961 81 KMHRCLFTLLGH-------LDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISV-LTGHNHYVMCASFHPKE-DL 149 (1208)
Q Consensus 81 ~~~~~~~~l~~h-------~~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~-l~~h~~~V~~l~~~p~~-~~ 149 (1208)
.+.+.+.++... ......+.|+|||++|++++. ++.|.++| .+++.+.. +... . |+.+.|++ +.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~ 179 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPST 179 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCce
Confidence 998888776432 134568999999999999874 57899999 99998877 6432 2 24556665 56
Q ss_pred EEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 000961 150 VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229 (1208)
Q Consensus 150 l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~ 229 (1208)
+++.+.||.+.++|. +.+....... .....+...-.....+.+++..++..+..+.+.
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~---------------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~ 237 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLV---------------------GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKIL 237 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEec---------------------cccccCCcceeecceeEecCCEEEEEcCCceEE
Confidence 677778999999999 6443211000 000011111122345666665555555788899
Q ss_pred EEECCCCceeEEEeecC----------cCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeeEEEeecC
Q 000961 230 LWRMNETKAWEVDTLRG----------HMNNVSCVMFHAKQDIIVSNSE----------DKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~----------h~~~V~~l~~sp~g~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
+.|+.+.....+..+.- .......+.++|+++.+.+... .+.|.++|..+++.+.++...
T Consensus 238 vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g 317 (373)
T 2mad_H 238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG 317 (373)
T ss_pred EEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC
Confidence 99987654221222211 1122444789999988877653 357999999999999888643
Q ss_pred CCCEEEEEEeCCCC-EEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee
Q 000961 290 HDRFWILASHPEMN-LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV 353 (1208)
Q Consensus 290 ~~~i~~la~sp~~~-~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~ 353 (1208)
...+.++|+|||+ ++.++.. .++.|.++|..+++.+..
T Consensus 318 -~~p~~i~~s~Dg~~~l~v~~~-------------------------~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 318 -HDVDAISVAQDGGPDLYALSA-------------------------GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -CCcCeEEECCCCCeEEEEEcC-------------------------CCCeEEEEECCCCCEEee
Confidence 4689999999998 5555542 256788999888776543
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=7.2e-12 Score=143.05 Aligned_cols=244 Identities=9% Similarity=-0.022 Sum_probs=177.5
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
....+++++. +...++...++.|.+||..+++.+.++. .......+++++++.++++...++.|.+||..+++...++
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 4467788853 4444555567999999999999999885 3466899999999965555548899999999999988777
Q ss_pred ccCC-----CCEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC------
Q 000961 90 LGHL-----DYIRTVQFHHEYPWIVSAS--DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD------ 156 (1208)
Q Consensus 90 ~~h~-----~~I~~v~fs~d~~~l~s~s--~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D------ 156 (1208)
.... .....+++ ++..+++++ .++.|.+||..+++.+..+... .....+.++|+|++++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcc
Confidence 5433 14556777 445565555 4889999999999988887653 345678899999877666554
Q ss_pred ----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 000961 157 ----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHPTLPLIVSGADDRQVKLW 231 (1208)
Q Consensus 157 ----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~L~sgs~dg~I~iw 231 (1208)
+.|.++|..+.+... .+. ........++++|+++.+.++.. .|.+|
T Consensus 199 ~~~~~~v~~id~~t~~v~~---------------------------~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~ 249 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEK---------------------------QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRM 249 (328)
T ss_dssp CBCCCEEEEEETTTTEEEE---------------------------EEECCTTCCCEEEEECTTSCEEEEESS--SEEEE
T ss_pred ccCCceEEEEECCCCeEEE---------------------------EEecCCCCCceeEEEecCCCEEEEEcc--EEEEE
Confidence 789999987754321 111 11236789999999998888765 89999
Q ss_pred ECCCCceeEEEeecCcCCCeEEEEEcc-CCCEEEEE----eCCCcEEEEeCCCCeeEEEeec
Q 000961 232 RMNETKAWEVDTLRGHMNNVSCVMFHA-KQDIIVSN----SEDKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 232 d~~~~~~~~~~~l~~h~~~V~~l~~sp-~g~~l~sg----s~dg~I~vwd~~~~~~~~~~~~ 288 (1208)
|..+++................++++| ++.++++. ..++.|.+||.. ++.+.++..
T Consensus 250 d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 250 PVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp ETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred ECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 998877421111222246788999999 56666666 578899999987 888887763
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=4.7e-12 Score=140.51 Aligned_cols=234 Identities=11% Similarity=0.018 Sum_probs=177.0
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEecccc-cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCC-CCEE
Q 000961 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHD-GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL-DYIR 97 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~-~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~-~~I~ 97 (1208)
.+++|++++.++.|++||.++|+.+.++..+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999998999999998776 5789999999999888 45678999999 899999988653 5788
Q ss_pred EEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEec------CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccc
Q 000961 98 TVQFHHEYPWIVSASD-DQTIRIWNWQSRTCISVLTG------HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (1208)
Q Consensus 98 ~v~fs~d~~~l~s~s~-Dg~I~iwd~~s~~~i~~l~~------h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~ 170 (1208)
++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+.+.++|+++++.+.++.|..||.. ++..
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 788888885 6777766642 11234456788999999999999999999987 4422
Q ss_pred cccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCc---
Q 000961 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH--- 247 (1208)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h--- 247 (1208)
..+..+ ....++...++|+.+++++.++.|..+|..+++. +..+..+
T Consensus 159 ---------------------------w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~--~w~~~~~~~~ 208 (276)
T 3no2_A 159 ---------------------------NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI--VRRVNANDIE 208 (276)
T ss_dssp ---------------------------EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE--EEEEEGGGSB
T ss_pred ---------------------------EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE--EEEecCCCCC
Confidence 122222 3445678889999999999888999999997775 3333222
Q ss_pred ---CCCeEEEEEccCCCEEEEEeCC--------CcEEEEeC-CCCeeEEEeec
Q 000961 248 ---MNNVSCVMFHAKQDIIVSNSED--------KSIRVWDV-TKRTGVQTFRR 288 (1208)
Q Consensus 248 ---~~~V~~l~~sp~g~~l~sgs~d--------g~I~vwd~-~~~~~~~~~~~ 288 (1208)
...+..+...++|+.+++.+.. +..+++.+ .+++.+.++..
T Consensus 209 ~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 209 GVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp SCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred CccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 2347888999999988887422 12344444 45666666543
No 202
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.47 E-value=6.4e-09 Score=133.72 Aligned_cols=470 Identities=10% Similarity=0.087 Sum_probs=290.7
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEeccc-ccC-EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEH-DGP-VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h-~~~-V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
|.++...++|.+.+ ++. +-|..||..+++.......+ ... |.++...+++.+.+ |+.++-|..|+..+++.....
T Consensus 133 i~~i~~d~~g~lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~ 209 (795)
T 4a2l_A 133 VNGIEEISPEQLLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVI 209 (795)
T ss_dssp CCEEEEEETTEEEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC
T ss_pred EEEEEECCCCCEEE-EEC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEec
Confidence 88888888887554 444 45889998776644322211 123 88999888886555 666555889998776543321
Q ss_pred -ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEec-------CCCCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 90 -LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG-------HNHYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 90 -~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~-------h~~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
..+...|.++...+++. |..++.++-|..||..+++....... ....|.++...++|. |..|+.+ -|.+
T Consensus 210 ~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~ 286 (795)
T 4a2l_A 210 PILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNI 286 (795)
T ss_dssp ----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEE
T ss_pred CCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhhe
Confidence 12356788888887775 44555554589999887765443322 135699998888776 5556655 5888
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~ 241 (1208)
||..+........... . ...-....|.++...++|. |-+|+.++-|..|+..+......
T Consensus 287 ~~~~~~~~~~~~~~~~-------~-------------~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~ 345 (795)
T 4a2l_A 287 YHEGTDSFASYSSNPV-------E-------------NGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNI 345 (795)
T ss_dssp EETTTTEEEEECCCTT-------S-------------TTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEE
T ss_pred EcCCCCeEEEEecCCC-------C-------------CCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEE
Confidence 9876644322110000 0 0001235689999999886 55677777788888765543111
Q ss_pred Eeec----CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee--------cCCCCEEEEEEeCCCC-EEEEE
Q 000961 242 DTLR----GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR--------REHDRFWILASHPEMN-LLAAG 308 (1208)
Q Consensus 242 ~~l~----~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~--------~~~~~i~~la~sp~~~-~la~g 308 (1208)
.... -....|.++...++|. |..|+.++-|..||..++....... .....|.++...++++ +.+..
T Consensus 346 ~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt 424 (795)
T 4a2l_A 346 RNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT 424 (795)
T ss_dssp CCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE
T ss_pred cCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe
Confidence 1111 1245699999988887 5557777779999987765443221 1245689999999999 55544
Q ss_pred ECCCeeeEeeCCCcc----------------eEEec-CCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEE
Q 000961 309 HDSGMIVFKLERERP----------------AFAVS-GDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTL 371 (1208)
Q Consensus 309 ~~~gi~v~~l~~~~~----------------~~s~~-~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l 371 (1208)
.++|+..++...+.. .+..+ .+.|+++..+.+..|+..+++.............. ...|.++
T Consensus 425 ~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i 503 (795)
T 4a2l_A 425 HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVV-SKQITTL 503 (795)
T ss_dssp TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCC-CCCEEEE
T ss_pred CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccC-CceEEEE
Confidence 457887776543321 11112 24455554466888888776543322110000000 1278889
Q ss_pred EEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCc---ccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCCceeee
Q 000961 372 SYSPTENAVLICSDVDGGSYELYVIPKDSIGRGD---SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKNEVVKK 448 (1208)
Q Consensus 372 ~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~---~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~~~~~~ 448 (1208)
...++|+..+ ++. +| +..|+...... ... .........+.++...++|++.+... . -|..||..+.....
T Consensus 504 ~~d~~g~lWi-gt~--~G-l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~ 576 (795)
T 4a2l_A 504 FRDSHKRLWI-GGE--EG-LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR 576 (795)
T ss_dssp EECTTCCEEE-EES--SC-EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE
T ss_pred EECCCCCEEE-EeC--Cc-eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE
Confidence 8898888543 333 23 55666544321 100 00112334678888888888777665 3 58889987665555
Q ss_pred ecCC-----cceEEEEEeCCccEEEEeCCeEEEEEcCCCeEEEEEeC------CCe--eEEEECCCCCEEEEEeCCeEEE
Q 000961 449 SILP-----IAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGDLQT------PFV--KYVVWSNDMESVALLSKHAIII 515 (1208)
Q Consensus 449 l~~~-----~~v~~i~~s~dg~~Las~dg~v~lwdl~~~~~l~~~~~------~~v--~~v~ws~dg~~la~~s~~~i~i 515 (1208)
+... ..|.++...++|.+.+++++.|..||..+++.. .+.. ..+ .++...++|. +.+++.+++..
T Consensus 577 ~~~~~gl~~~~i~~i~~d~~g~lWi~t~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~-l~~g~~~Gl~~ 654 (795)
T 4a2l_A 577 YNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQ-MYFGGINGITT 654 (795)
T ss_dssp ECGGGTCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSC-EEEEETTEEEE
T ss_pred eCCCCCCchhheEEEEECCCCCEEEEcCCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCe-EEEecCCceEE
Confidence 4321 268899999999999999999999999877543 3332 222 4667778887 66788889888
Q ss_pred EecC
Q 000961 516 ASKK 519 (1208)
Q Consensus 516 ~~~~ 519 (1208)
++++
T Consensus 655 ~~p~ 658 (795)
T 4a2l_A 655 FRPE 658 (795)
T ss_dssp ECGG
T ss_pred EcHH
Confidence 8765
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=2.8e-10 Score=127.26 Aligned_cols=229 Identities=7% Similarity=-0.017 Sum_probs=165.4
Q ss_pred cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE-EccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 000961 48 DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT-LLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126 (1208)
Q Consensus 48 ~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~-l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~ 126 (1208)
..+...+.+++++++|.++++...++.|.+||.. ++.... ...+...+..+++.+++...++...++.|..||.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 3455679999999999988776668899999988 554332 23355789999999999877776668899999986 33
Q ss_pred EE-EEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC
Q 000961 127 CI-SVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR 205 (1208)
Q Consensus 127 ~i-~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 205 (1208)
.. ..+......+.++++.|++++.++...++.|.+||. +.+.. ......+..
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~--------------------------~~~~~~~~~ 141 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR--------------------------EYELPNKGS 141 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE--------------------------EEECSSTTC
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE--------------------------EecCCCCCC
Confidence 32 222234567899999999987777777889999997 32211 111122345
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 000961 206 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT 285 (1208)
Q Consensus 206 ~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~ 285 (1208)
.+..++++++|.+.++...++.|..|+. +++.. ......+...+.+++++++|.+.++...++.|.+||. +++....
T Consensus 142 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 142 YPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF 218 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE
Confidence 6889999999988777777889999998 55532 2223344567889999999997777767889999998 6654332
Q ss_pred -eecCCCCEEEEEEeCCCCEEEEE
Q 000961 286 -FRREHDRFWILASHPEMNLLAAG 308 (1208)
Q Consensus 286 -~~~~~~~i~~la~sp~~~~la~g 308 (1208)
.......+..++++++|+++++.
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECCCCCCCceeEEECCCCCEEEec
Confidence 22234578899999998866655
No 204
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=8.8e-08 Score=122.84 Aligned_cols=508 Identities=7% Similarity=0.010 Sum_probs=308.4
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEe-c---c---cccCEEEEEEEc--CCCEEEEEECCCeEEEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-D---E---HDGPVRGVHFHK--SQPLFVSGGDDYKIKVWN 79 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l-~---~---h~~~V~~l~fsp--~~~~Lasgs~Dg~I~vWd 79 (1208)
...|.++...++|..|.+|+.++-+..||..+++..... . . ....|.++.... ++. |..++.++-|..||
T Consensus 65 ~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~ 143 (781)
T 3v9f_A 65 GNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYLD 143 (781)
T ss_dssp CSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEEE
T ss_pred ccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEEE
Confidence 346999999988874556777745999998877654421 1 0 123688888877 665 44566455688999
Q ss_pred CCCCeEEEEEc-----cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe-------cCCCCEEEEEEeeCC
Q 000961 80 YKMHRCLFTLL-----GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT-------GHNHYVMCASFHPKE 147 (1208)
Q Consensus 80 ~~~~~~~~~l~-----~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~-------~h~~~V~~l~~~p~~ 147 (1208)
..+++...... .....|.++...+++. |..++.++-|..||..+++...... .....|.++...+++
T Consensus 144 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 222 (781)
T 3v9f_A 144 IATGKFTHYNKSTVPALPSEQTWTATEAEDGK-LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG 222 (781)
T ss_dssp TTTTEEEEESTTTCTTCSCCCEEEEEEEETTE-EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC
T ss_pred CCCCeEEeeccCcccCCCccceEEEEECCCCC-EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC
Confidence 87766433211 1234688888877775 5556666568899988776533211 113568888888777
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCc
Q 000961 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227 (1208)
Q Consensus 148 ~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~ 227 (1208)
. |..|+.+ -+.+||..+.+........ ..........|.++...++|. |.+|+..+-
T Consensus 223 ~-lwigt~~-Gl~~~d~~~~~~~~~~~~~--------------------~~~~~l~~~~i~~i~~d~~g~-lWigt~~~G 279 (781)
T 3v9f_A 223 N-IWIGTSK-GLALFNANTETFTNFHNNP--------------------GNIHGALSSYIFSIKQLKDNK-LWIATELNG 279 (781)
T ss_dssp C-EEEEETT-EEEEEETTTTEEEC-------------------------------CCCCEEEEEECTTSE-EEEEESSSC
T ss_pred C-EEEEeCC-cHheECCCCCcEEEEEcCC--------------------CccccccCceEEEEEECCCCC-EEEEeCCCC
Confidence 6 4455655 6889997664332210000 000011245688999888875 556676556
Q ss_pred EEEEECCCCceeEEEe-------e-----cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee--------
Q 000961 228 VKLWRMNETKAWEVDT-------L-----RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-------- 287 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~-------l-----~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~-------- 287 (1208)
|.+++..+........ . ......|.++...++|. |..|+.++-|..++..+........
T Consensus 280 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 358 (781)
T 3v9f_A 280 IMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNES 358 (781)
T ss_dssp EEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSS
T ss_pred eEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccC
Confidence 8889987765321111 0 11345789999988887 5566766679999876554322211
Q ss_pred -cCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCc-------------ce--EEec-CCEEEEE-eCCeEEEEEccCCc
Q 000961 288 -REHDRFWILASHPEMNLLAAGHDSGMIVFKLERER-------------PA--FAVS-GDSLFYA-KDRFLRYYEFSTQK 349 (1208)
Q Consensus 288 -~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~-------------~~--~s~~-~~~L~~~-~d~~i~v~d~~~~~ 349 (1208)
.....|.++...+++++.+...++|+..++..... .+ +..+ .+.|+++ .++.+..++..+++
T Consensus 359 ~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 359 SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK 438 (781)
T ss_dssp CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE
T ss_pred CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc
Confidence 12356899999998887766657888776543211 11 1122 3455556 44677778776654
Q ss_pred ceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccc--cccCCceEEEEEEeCCcEE
Q 000961 350 DTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQ--DAKKGLGGSAIFIARNRFA 427 (1208)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~--~~~~~~i~~~~fs~d~~~l 427 (1208)
..... ..... ...|.++...++|. +.+++. +-+..|+............. ......+.++...++|++.
T Consensus 439 ~~~~~-~~~~~----~~~v~~i~~d~~g~-lwigt~---~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 509 (781)
T 3v9f_A 439 FQIIE-LEKNE----LLDVRVFYEDKNKK-IWIGTH---AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW 509 (781)
T ss_dssp EEECC-STTTC----CCCEEEEEECTTSE-EEEEET---TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred EEEec-cCCCC----CCeEEEEEECCCCC-EEEEEC---CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE
Confidence 32221 10111 22788888888776 444333 34667775543221110000 0113568888888888877
Q ss_pred EEEcCCCEEEEEecCCceeeeecCC-----cceEEEEEeCCccEEEEeCCeE-EEEEcCCCeEEEEEeC------CCeeE
Q 000961 428 VLDKSSNQVLVKNLKNEVVKKSILP-----IAADAIFYAGTGNLLCRAEDRV-VIFDLQQRLVLGDLQT------PFVKY 495 (1208)
Q Consensus 428 ~~~~~dg~I~Iwdl~~~~~~~l~~~-----~~v~~i~~s~dg~~Las~dg~v-~lwdl~~~~~l~~~~~------~~v~~ 495 (1208)
+....+| |..+|..+.....+... ..|.++...++|.+.+.+.+.+ ..||..+++.. .+.. ..|..
T Consensus 510 igt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~ 587 (781)
T 3v9f_A 510 IGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRA 587 (781)
T ss_dssp EEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCE
T ss_pred EEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEE
Confidence 7665334 77888876655555422 2689999999999888776667 99998777543 2221 45788
Q ss_pred EEECCCCCEEEEEeCCeEEEEecCccceeeeec-------ceeeeeeEEecCCeEEEecCCeeeeE
Q 000961 496 VVWSNDMESVALLSKHAIIIASKKLVHQCTLHE-------TIRVKSGAWDDNGVFIYTTLNHIKYC 554 (1208)
Q Consensus 496 v~ws~dg~~la~~s~~~i~i~~~~~~~~~~~~e-------~~~iks~~wd~~~~~iy~t~~~i~y~ 554 (1208)
+..+++|. |.+++.++++.++.....+..... .....+...+.++.+++.+.+.+.++
T Consensus 588 i~~d~~g~-lW~~t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~f 652 (781)
T 3v9f_A 588 ISEDKNGN-IWASTNTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSINGLCFF 652 (781)
T ss_dssp EEECSSSC-EEEECSSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTEEEEE
T ss_pred EEECCCCC-EEEEcCCceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCCceEEE
Confidence 88888887 556678889999887666554432 11233455555667777776665554
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=8.7e-12 Score=159.17 Aligned_cols=281 Identities=11% Similarity=-0.014 Sum_probs=181.8
Q ss_pred eCCCCEEEEEecCCe---EEEEE--CC---CCeEEEEe------cccccCEEEEEEEcCCCEEEEEECC-----CeEEEE
Q 000961 18 HSKRPWILASLHSGV---IQLWD--YR---MGTLIDRF------DEHDGPVRGVHFHKSQPLFVSGGDD-----YKIKVW 78 (1208)
Q Consensus 18 spdg~~Lasg~~dg~---I~iWd--~~---~g~~i~~l------~~h~~~V~~l~fsp~~~~Lasgs~D-----g~I~vW 78 (1208)
+|+|++++....++. -.+|- .. .+.....+ .+|...+..++|||||++|+.++++ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489999987765432 44554 33 33322221 2344578999999999999987654 469999
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCc--------------EEEEECCCCeE--EEEEe--cCCCCEEE
Q 000961 79 NYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQT--------------IRIWNWQSRTC--ISVLT--GHNHYVMC 140 (1208)
Q Consensus 79 d~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~--------------I~iwd~~s~~~--i~~l~--~h~~~V~~ 140 (1208)
|+.+++.+.... +...+..++|+|| +.|+.++.++. |++|++.++.. ...+. .+...+..
T Consensus 195 dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 999998765321 2112357899999 99988887654 89999987652 22333 34446899
Q ss_pred EEEeeCCCEEEEEECCC-----eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCC
Q 000961 141 ASFHPKEDLVVSASLDQ-----TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT 215 (1208)
Q Consensus 141 l~~~p~~~~l~s~s~Dg-----~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 215 (1208)
+.|+|+|++|+..+.++ .|.+||+.+..... ...+..+...+... ++|+
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~-------------------------~~~l~~~~~~~~~~-~~~d 326 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP-------------------------VTALIPDLKAQWDF-VDGV 326 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC-------------------------CEEEECSSSSCEEE-EEEE
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc-------------------------cEEecCCCCceEEE-Eecc
Confidence 99999999888877544 89999986641100 00222333344444 3488
Q ss_pred CCEEEEEeCC----CcEEEEECCCCc-eeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEeecC
Q 000961 216 LPLIVSGADD----RQVKLWRMNETK-AWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT-KRTGVQTFRRE 289 (1208)
Q Consensus 216 g~~L~sgs~d----g~I~iwd~~~~~-~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~-~~~~~~~~~~~ 289 (1208)
|+.|+..+.+ +.|.+|++.+.. .+ ...+..+...+.++.|+ ++.++++...|+..++|.+. ++.....+..+
T Consensus 327 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 404 (741)
T 1yr2_A 327 GDQLWFVSGDGAPLKKIVRVDLSGSTPRF-DTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP 404 (741)
T ss_dssp TTEEEEEECTTCTTCEEEEEECSSSSCEE-EEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCcccc-EEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC
Confidence 8888887763 459999988742 22 22334455567778887 56678888889887777543 45555555543
Q ss_pred -CCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc
Q 000961 290 -HDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD 350 (1208)
Q Consensus 290 -~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~ 350 (1208)
...+..++++|+++.++....+.. ..+++..||+.+++.
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss~~----------------------~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSSFT----------------------QPATVLALDPATAKT 444 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEETT----------------------EEEEEEEEETTTTEE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCC----------------------CCCEEEEEECCCCcE
Confidence 456788888888875554321110 457788999887753
No 206
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.43 E-value=1e-11 Score=137.00 Aligned_cols=227 Identities=9% Similarity=-0.008 Sum_probs=158.3
Q ss_pred CEEEEEEEcCCCEEE-EEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000961 53 PVRGVHFHKSQPLFV-SGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131 (1208)
Q Consensus 53 ~V~~l~fsp~~~~La-sgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l 131 (1208)
...++++++++.+++ +.+.++.|.+||..++........+...+.++++.+++..+++.. ++.|.+||..+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999777 546788999999765543322233445788999999998555544 889999998765443222
Q ss_pred ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE
Q 000961 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1208)
Q Consensus 132 ~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (1208)
......+..++++|+++++++...++.|.+|+..+..... ........+..++
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---------------------------~~~~~~~~p~~i~ 156 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---------------------------LPFTGLNDPDGVA 156 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE---------------------------CCCCSCCSCCCEE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe---------------------------eccccCCCceeEE
Confidence 2333678999999999877777778899999754422110 0111223567899
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCC
Q 000961 212 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD 291 (1208)
Q Consensus 212 ~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~ 291 (1208)
++|+|+++++...++.|.+|+..+... ......+...+.+++++++|.++++...++.|.+||............+..
T Consensus 157 ~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~ 234 (270)
T 1rwi_B 157 VDNSGNVYVTDTDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN 234 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTTCCE--EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred EeCCCCEEEEECCCCEEEEEecCCCce--EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCC
Confidence 999999777777788999999887664 222233346789999999998888777788999999876544332222335
Q ss_pred CEEEEEEeCCCCEEEEEE
Q 000961 292 RFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 292 ~i~~la~sp~~~~la~g~ 309 (1208)
.+..++++++|+++++..
T Consensus 235 ~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp CEEEEEECTTCCEEEEEG
T ss_pred CceeEEECCCCCEEEEEC
Confidence 688999999998776665
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=5.7e-12 Score=160.86 Aligned_cols=243 Identities=8% Similarity=0.017 Sum_probs=168.2
Q ss_pred CCCCEEEEEEeCCCCEEEEEecC-----CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCC---------
Q 000961 8 KSNRVKGLSFHSKRPWILASLHS-----GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY--------- 73 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~d-----g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg--------- 73 (1208)
|...+.+++|||||++||.+..+ ..|++||+.+|+.+... .+...+..++|+|| +.|+.++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33468899999999999988654 36999999999876532 22223467899999 9888887654
Q ss_pred -----eEEEEECCCCe----EEEEEccCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEECCCC--eEEEEEecCCCC
Q 000961 74 -----KIKVWNYKMHR----CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ-----TIRIWNWQSR--TCISVLTGHNHY 137 (1208)
Q Consensus 74 -----~I~vWd~~~~~----~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg-----~I~iwd~~s~--~~i~~l~~h~~~ 137 (1208)
.|++|++.++. .+.....+...+..+.|||||++|+..+.++ .|++||+.++ ++...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 38999997765 3333333444689999999999998877554 8999999877 314555555555
Q ss_pred EEEEEEeeCCCEEEEEECC----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEc
Q 000961 138 VMCASFHPKEDLVVSASLD----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH 213 (1208)
Q Consensus 138 V~~l~~~p~~~~l~s~s~D----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (1208)
+.... +|+|+.|+..+.+ +.|.+||+.+.. . .....+..+...+.+++++
T Consensus 319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~------------------------~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-P------------------------RFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-C------------------------EEEEEECCCSSEEEEEEEE
T ss_pred eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-c------------------------ccEEEecCCCCeEEEEEEE
Confidence 55553 4889988888764 459999986631 0 0122334444556677887
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCceeEEEeecC-cCCCeEEEEEccCCCEEEEEe----CCCcEEEEeCCCCe
Q 000961 214 PTLPLIVSGADDRQVKLWRMN-ETKAWEVDTLRG-HMNNVSCVMFHAKQDIIVSNS----EDKSIRVWDVTKRT 281 (1208)
Q Consensus 214 p~g~~L~sgs~dg~I~iwd~~-~~~~~~~~~l~~-h~~~V~~l~~sp~g~~l~sgs----~dg~I~vwd~~~~~ 281 (1208)
++.++++...++..++|.+. +++. ...+.. +.+.+..+.++|+++.++... ..++|++||+.+++
T Consensus 373 -~~~lv~~~~~dg~~~l~~~~~~g~~--~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 373 -GNRLFASYIHDAKSQVLAFDLDGKP--AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp -BTEEEEEEEETTEEEEEEEETTSCE--EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCc--eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 55678888889987777554 2332 344443 356788999999987665332 34689999998876
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=1.1e-10 Score=136.00 Aligned_cols=281 Identities=11% Similarity=0.080 Sum_probs=198.7
Q ss_pred CCCCEEEEEecC-----CeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEE----------CCCeEEEEECCCC
Q 000961 19 SKRPWILASLHS-----GVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG----------DDYKIKVWNYKMH 83 (1208)
Q Consensus 19 pdg~~Lasg~~d-----g~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs----------~Dg~I~vWd~~~~ 83 (1208)
++++++.+.... +.|.++|..+++.+.++..-..+ .++++||++++.++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 577777777553 69999999999999999766666 899999999887775 4678999999999
Q ss_pred eEEEEEccC-------CCCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCC-CEEEEE
Q 000961 84 RCLFTLLGH-------LDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVSA 153 (1208)
Q Consensus 84 ~~~~~l~~h-------~~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s~ 153 (1208)
+.+.++.-. ......+.|+||+++++++.. ++.|.+.|..+++.+..+.... +....|++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence 998887522 234567899999999999874 5789999999999998887422 13344544 667778
Q ss_pred ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCC-eEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000961 154 SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 154 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~g~~L~sgs~dg~I~iwd 232 (1208)
+.||.+.+.+..+.+...... . .+.....+ ...+.+.+++..++..+..+.|.+.|
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~------------~-----------~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNT------------E-----------VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEEC------------C-----------CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEee------------e-----------eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 888988888884433221000 0 00000111 11356788888888888889999999
Q ss_pred CCCCceeEEEeecC----------cCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeeEEEeecCCCC
Q 000961 233 MNETKAWEVDTLRG----------HMNNVSCVMFHAKQDIIVSNSE----------DKSIRVWDVTKRTGVQTFRREHDR 292 (1208)
Q Consensus 233 ~~~~~~~~~~~l~~----------h~~~V~~l~~sp~g~~l~sgs~----------dg~I~vwd~~~~~~~~~~~~~~~~ 292 (1208)
..+.....+..+.- .......++++|+++.+++... ++.|.++|..+++.+.++.... .
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~ 371 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-E 371 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-E
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-C
Confidence 87655321111110 0111223689999887776542 3579999999999999886433 5
Q ss_pred EEEEEEeCCCC-EEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeE
Q 000961 293 FWILASHPEMN-LLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVI 354 (1208)
Q Consensus 293 i~~la~sp~~~-~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~ 354 (1208)
.+.++++|+++ ++++... .++.|.++|..+++.+..+
T Consensus 372 P~gia~spDg~~~lyv~n~-------------------------~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 372 IDSINVSQDAEPLLYALSA-------------------------GTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECEEEECCSSSCEEEEEET-------------------------TTTEEEEEETTTCCEEEEE
T ss_pred cCeEEEccCCCEEEEEEcC-------------------------CCCeEEEEECCCCCEEEEe
Confidence 78999999998 7776653 3678899999998875443
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=1.7e-10 Score=130.24 Aligned_cols=248 Identities=13% Similarity=0.153 Sum_probs=171.5
Q ss_pred EeecCCCCEEEEEEeCCCCEEEE-------EecCCeEEEEECCCCeEEEEec----ccccCEEEEEEEcC-CCEEEEEEC
Q 000961 4 KFETKSNRVKGLSFHSKRPWILA-------SLHSGVIQLWDYRMGTLIDRFD----EHDGPVRGVHFHKS-QPLFVSGGD 71 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Las-------g~~dg~I~iWd~~~g~~i~~l~----~h~~~V~~l~fsp~-~~~Lasgs~ 71 (1208)
.+...-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ +.++++. .
T Consensus 12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~ 90 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-M 90 (314)
T ss_dssp EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-T
T ss_pred hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-C
Confidence 34445556789999999987777 5678899999988887643322 25677999999999 6655544 4
Q ss_pred CCeEEEEECCCCeEEEE-Ecc----CCCCEEEEEEcCCCCEEEEEECC---------------CcEEEEECCCCeEEEEE
Q 000961 72 DYKIKVWNYKMHRCLFT-LLG----HLDYIRTVQFHHEYPWIVSASDD---------------QTIRIWNWQSRTCISVL 131 (1208)
Q Consensus 72 Dg~I~vWd~~~~~~~~~-l~~----h~~~I~~v~fs~d~~~l~s~s~D---------------g~I~iwd~~s~~~i~~l 131 (1208)
.+.|.+||.+ ++.... ... +...+.++++.+++...++...+ +.|..||.. ++.....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 4579999988 665432 211 12358899999999877776554 567777765 5544333
Q ss_pred ecCCCCEEEEEEe----eCCCEEEEE-ECCCeEEEEECC-CCccccccCCCcceeeccccccccccccceEEEEEeccC-
Q 000961 132 TGHNHYVMCASFH----PKEDLVVSA-SLDQTVRVWDIG-ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD- 204 (1208)
Q Consensus 132 ~~h~~~V~~l~~~----p~~~~l~s~-s~Dg~V~vwdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~- 204 (1208)
.+......++|+ |+++.++.+ ..++.|.+||.. ..+... ......+.++.
T Consensus 169 -~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~----------------------~~~~~~~~~~~~ 225 (314)
T 1pjx_A 169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN----------------------KKVWGHIPGTHE 225 (314)
T ss_dssp -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE----------------------EEEEEECCCCSS
T ss_pred -cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc----------------------ceEEEECCCCCC
Confidence 233457889999 998766555 467899999975 211100 00111222333
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEE-EEeCCCcEEEEeCCC
Q 000961 205 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIV-SNSEDKSIRVWDVTK 279 (1208)
Q Consensus 205 ~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~-sgs~dg~I~vwd~~~ 279 (1208)
.....++++++|.++++...++.|.+||..+++. ...+..+...+.+++|+|+++.|. +...++.|..|++..
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE--eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 5577899999999888888889999999986654 344455567899999999999555 445567899998764
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=1e-10 Score=137.59 Aligned_cols=249 Identities=10% Similarity=0.034 Sum_probs=170.2
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCC--eEEEEECCCCeEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY--KIKVWNYKMHRCLF 87 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg--~I~vWd~~~~~~~~ 87 (1208)
....+|+|+++++++++...++.|++||..++...........+ . ++|++++..|+++..++ .|.+|+..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46889999999997777777799999999888776655443333 3 99999999998888765 89999987655444
Q ss_pred EE----ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE----EecCCCCE-E-EEEEeeC-CCEEEEEECC
Q 000961 88 TL----LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISV----LTGHNHYV-M-CASFHPK-EDLVVSASLD 156 (1208)
Q Consensus 88 ~l----~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~----l~~h~~~V-~-~l~~~p~-~~~l~s~s~D 156 (1208)
.+ ..+...+.+++++|++..|+.+..++.|+.||..++..... ..++...- . .++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22456778999999656677777788999999987764332 22222222 3 8999996 5555555567
Q ss_pred CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 000961 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNE 235 (1208)
Q Consensus 157 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~ 235 (1208)
+.|+.|+..+...... . .. ...+..+. ......-.....++++|+|.++++-+ .++.|+.|+..+
T Consensus 289 ~~I~~~~~~g~~~~~~-g--------~~--~~~g~~dg---~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 289 SSVYKITPDGECEWFC-G--------SA--TQKTVQDG---LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp TEEEEECTTCCEEEEE-E--------CT--TCCSCBCE---EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred CEEEEEecCCCEEEEE-e--------CC--CCCCcCCC---cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 8999998765311000 0 00 00000000 00001123467899999999777777 789999999877
Q ss_pred CceeEEEeecCc---------------CCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 000961 236 TKAWEVDTLRGH---------------MNNVSCVMFHAKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 236 ~~~~~~~~l~~h---------------~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~ 277 (1208)
+. +.++.++ ......++++|+|.++++-..++.|+.+++
T Consensus 355 G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 355 GY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 76 3334333 346889999999888888888888887764
No 211
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=6.5e-07 Score=114.77 Aligned_cols=507 Identities=9% Similarity=0.012 Sum_probs=302.1
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecc-------cccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDE-------HDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~-------h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
++.|.+|.-.++|. |-.|+.+| +..||-.+-+....... ....|+++.-.+++..|-+|+.++-+..||..
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~ 95 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYE 95 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSSEEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETT
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCceEEEEcCCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCC
Confidence 46799999998885 66777787 66787543222221001 12459999988888735567777569999988
Q ss_pred CCeEEEEEcc-------CCCCEEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEEe-----cCCCCEEEEEEeeCC
Q 000961 82 MHRCLFTLLG-------HLDYIRTVQFHH--EYPWIVSASDDQTIRIWNWQSRTCISVLT-----GHNHYVMCASFHPKE 147 (1208)
Q Consensus 82 ~~~~~~~l~~-------h~~~I~~v~fs~--d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~-----~h~~~V~~l~~~p~~ 147 (1208)
+++....... ....|.++.... ++. |..++.++.|..+|..+++...... .....|.++...+++
T Consensus 96 ~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 174 (781)
T 3v9f_A 96 TQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDG 174 (781)
T ss_dssp TTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETT
T ss_pred CCeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCC
Confidence 7765432111 123688888877 664 5556655668899988776543311 123468888877776
Q ss_pred CEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCc
Q 000961 148 DLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227 (1208)
Q Consensus 148 ~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~ 227 (1208)
. |..++.++-|..||..+.+....... ......-....|.++...+++.+.+ |+.+ -
T Consensus 175 ~-lwigt~~~Gl~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-G 231 (781)
T 3v9f_A 175 K-LYIGHVEGGLSILSLNDKSVKHFVHD--------------------PQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-G 231 (781)
T ss_dssp E-EEEEETTTEEEEEETTTTEEEEECC----------------------------CCSSEEEEEECTTCCEEE-EETT-E
T ss_pred C-EEEEecCCCeEEEcCCCCceEeeecC--------------------CCCcccCCCCceeEEEEcCCCCEEE-EeCC-c
Confidence 4 56677776788899776433211000 0000001235688888888887554 4555 5
Q ss_pred EEEEECCCCceeEEEee-----cCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee--------------c
Q 000961 228 VKLWRMNETKAWEVDTL-----RGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR--------------R 288 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~l-----~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~--------------~ 288 (1208)
+.+||..+.+....... ......|.++...++|. |..|+..+-|.++|..++....... .
T Consensus 232 l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 310 (781)
T 3v9f_A 232 LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSL 310 (781)
T ss_dssp EEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSB
T ss_pred HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCC
Confidence 88999877653211111 11245689999888776 5556664568899987655332111 1
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcc---------------------eEEec-CCEEEEE-eCCeEEEEEc
Q 000961 289 EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERP---------------------AFAVS-GDSLFYA-KDRFLRYYEF 345 (1208)
Q Consensus 289 ~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~---------------------~~s~~-~~~L~~~-~d~~i~v~d~ 345 (1208)
....|.++...++|++.+...++|+..++.....- .+..+ .+.|+++ .++-+..|+.
T Consensus 311 ~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 390 (781)
T 3v9f_A 311 SNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN 390 (781)
T ss_dssp SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence 23568999999999987766688887775442210 11222 2456666 4667888887
Q ss_pred cCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCCc
Q 000961 346 STQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNR 425 (1208)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~ 425 (1208)
.++....... ..... ...|.++...++|...+ .+ .++-+..|+.......... ........|.++...++++
T Consensus 391 ~~~~~~~~~~-~~~~~---~~~v~~i~~d~~g~lWi-gt--~~~Gl~~~~~~~~~~~~~~-~~~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 391 GKRVAIYNKE-NRELL---SNSVLCSLKDSEGNLWF-GT--YLGNISYYNTRLKKFQIIE-LEKNELLDVRVFYEDKNKK 462 (781)
T ss_dssp TEEEEECC------CC---CSBEEEEEECTTSCEEE-EE--TTEEEEEECSSSCEEEECC-STTTCCCCEEEEEECTTSE
T ss_pred CCCeEEEccC-CCCCC---CcceEEEEECCCCCEEE-Ee--ccCCEEEEcCCCCcEEEec-cCCCCCCeEEEEEECCCCC
Confidence 6543322211 10111 22788888888887443 22 2234555554332111110 0012234677887777888
Q ss_pred EEEEEcCCCEEEEEecCCceeeeec-C------CcceEEEEEeCCccEEEEeC-CeEEEEEcCCCeEEEEEeC------C
Q 000961 426 FAVLDKSSNQVLVKNLKNEVVKKSI-L------PIAADAIFYAGTGNLLCRAE-DRVVIFDLQQRLVLGDLQT------P 491 (1208)
Q Consensus 426 ~l~~~~~dg~I~Iwdl~~~~~~~l~-~------~~~v~~i~~s~dg~~Las~d-g~v~lwdl~~~~~l~~~~~------~ 491 (1208)
+.+... +-|..+|..+.....+. . ...|.++...++|.+.+.+. +.+..||..+++.. .+.. .
T Consensus 463 lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~ 539 (781)
T 3v9f_A 463 IWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSN 539 (781)
T ss_dssp EEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE-EECTTTTCSCS
T ss_pred EEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE-EccCCCCCCCC
Confidence 766654 56888998754333332 1 23789999999999887764 77999998776543 3321 4
Q ss_pred CeeEEEECCCCCEEEEEeCCeE-EEEecCccceeeeec-----ceeeeeeEEecCCeEEEecCCeeeeE
Q 000961 492 FVKYVVWSNDMESVALLSKHAI-IIASKKLVHQCTLHE-----TIRVKSGAWDDNGVFIYTTLNHIKYC 554 (1208)
Q Consensus 492 ~v~~v~ws~dg~~la~~s~~~i-~i~~~~~~~~~~~~e-----~~~iks~~wd~~~~~iy~t~~~i~y~ 554 (1208)
.|.++..+++|... +++.+++ +.++.....+..... ...+.+..-|..+.+.+.|.+.+..+
T Consensus 540 ~i~~i~~d~~g~lW-i~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~ 607 (781)
T 3v9f_A 540 TINQIYRSSKGQMW-LATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCY 607 (781)
T ss_dssp CEEEEEECTTSCEE-EEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEE
T ss_pred eeEEEEECCCCCEE-EEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCCceEEE
Confidence 58889988888854 4555888 888876655544332 12355666666677777776665554
No 212
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.36 E-value=2.7e-09 Score=123.61 Aligned_cols=283 Identities=10% Similarity=-0.055 Sum_probs=177.3
Q ss_pred EEcCCCEEEEEEC--CC---eEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEE----------CCCcEEEEECC
Q 000961 59 FHKSQPLFVSGGD--DY---KIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS----------DDQTIRIWNWQ 123 (1208)
Q Consensus 59 fsp~~~~Lasgs~--Dg---~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s----------~Dg~I~iwd~~ 123 (1208)
..|+++++.+... .. +|.+||..+++.+.++.....+ .++++||+++++++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467776666543 22 8999999999998888755444 999999999999886 36789999999
Q ss_pred CCeEEEEEecC-------CCCEEEEEEeeCCCEEEEEEC--CCeEEEEECCCCccccccCCCcceeeccccccccccccc
Q 000961 124 SRTCISVLTGH-------NHYVMCASFHPKEDLVVSASL--DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (1208)
Q Consensus 124 s~~~i~~l~~h-------~~~V~~l~~~p~~~~l~s~s~--Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1208)
+.+.+..+... ......+.|+|+|++|++++. ++.|.++| .+.+....
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~---------------------- 162 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ---------------------- 162 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE----------------------
Confidence 98888776532 123557899999999999874 57899999 87654321
Q ss_pred eEEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEe---ecCcCCC-eEEEEEccCCCEEEEEeCC
Q 000961 195 VVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDT---LRGHMNN-VSCVMFHAKQDIIVSNSED 269 (1208)
Q Consensus 195 ~~~~~~~~h~~~V~~l~~sp~g-~~L~sgs~dg~I~iwd~~~~~~~~~~~---l~~h~~~-V~~l~~sp~g~~l~sgs~d 269 (1208)
.+. ... ++.+.|++ ..+++.+.||.+.+++. +++...... ......+ .....+.+++..++..+..
T Consensus 163 ----~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 233 (373)
T 2mad_H 163 ----LLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS 233 (373)
T ss_pred ----EcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCC
Confidence 010 111 13344544 35566677899999999 666421111 0011112 1234566666655555577
Q ss_pred CcEEEEeCCCCe--eEEEeecCCCC----------EEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeC
Q 000961 270 KSIRVWDVTKRT--GVQTFRREHDR----------FWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKD 337 (1208)
Q Consensus 270 g~I~vwd~~~~~--~~~~~~~~~~~----------i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d 337 (1208)
+.+.+.|+.++. .+..+...... ...++++|+++.+.+...++.- +. .+ ...
T Consensus 234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~-~~---~~------------~~~ 297 (373)
T 2mad_H 234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA-WK---LH------------AAA 297 (373)
T ss_pred ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc-cc---cc------------CCC
Confidence 899999987553 22333221111 2224445544443333211100 00 00 013
Q ss_pred CeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 338 RFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 338 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
+.|.++|..+++.+..+.+.. .+..++|+|||+.+++++...++.+.+|+....
T Consensus 298 ~~V~VID~~t~~vv~~i~~g~--------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLGH--------DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CeEEEEECCCCEEEEEEECCC--------CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 579999999988766654432 678999999999555555545679999998764
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.34 E-value=4e-09 Score=117.78 Aligned_cols=229 Identities=7% Similarity=-0.067 Sum_probs=163.9
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE-EEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF-TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC 127 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~-~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~ 127 (1208)
.....+.++++++++.++++...++.|.+||.. ++... .+..+...+..+++.+++...++...++.|..||.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678999999999988877778999999987 55433 223344679999999999877776667899999987 554
Q ss_pred EE-EEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCC
Q 000961 128 IS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (1208)
Q Consensus 128 i~-~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 206 (1208)
.. ........+.++++.+++++.++...++.|..||.. .+... .........
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~--------------------------~~~~~~~~~ 147 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE--------------------------YDLPNKGSY 147 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE--------------------------EECSSTTCC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE--------------------------ccCCCCCCC
Confidence 32 222344678999999999877776668899999875 22111 112223456
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE-
Q 000961 207 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQT- 285 (1208)
Q Consensus 207 V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~- 285 (1208)
+..+++++++++.++...++.|..|+. +++.. ......+...+.+++++++|++.++....+.|.+||. ++.....
T Consensus 148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 148 PAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE
Confidence 789999999997776666788999998 44432 2223345567899999999987777767778999998 4544332
Q ss_pred eecCCCCEEEEEEeCCCCEEEEEE
Q 000961 286 FRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 286 ~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
.......+.+++++++++++++..
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEET
T ss_pred CCCCCCCceEEEECCCCCEEEecc
Confidence 223345688999999988666553
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.33 E-value=3.4e-10 Score=127.83 Aligned_cols=228 Identities=11% Similarity=0.069 Sum_probs=159.6
Q ss_pred cCEEEEEEEcCCCEEEE-------EECCCeEEEEECCCCeEEEEEc----cCCCCEEEEEEcCC-CCEEEEEECCCcEEE
Q 000961 52 GPVRGVHFHKSQPLFVS-------GGDDYKIKVWNYKMHRCLFTLL----GHLDYIRTVQFHHE-YPWIVSASDDQTIRI 119 (1208)
Q Consensus 52 ~~V~~l~fsp~~~~Las-------gs~Dg~I~vWd~~~~~~~~~l~----~h~~~I~~v~fs~d-~~~l~s~s~Dg~I~i 119 (1208)
....+++|++++.++++ +..++.|.+||..+++...... ++...+..++++++ +. +..++..+.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEE
Confidence 34678999999998888 5778899999988877543222 25567999999999 65 444454557999
Q ss_pred EECCCCeEEEE-Eec----CCCCEEEEEEeeCCCEEEEEECC---------------CeEEEEECCCCccccccCCCcce
Q 000961 120 WNWQSRTCISV-LTG----HNHYVMCASFHPKEDLVVSASLD---------------QTVRVWDIGALRKKTVSPADDIL 179 (1208)
Q Consensus 120 wd~~s~~~i~~-l~~----h~~~V~~l~~~p~~~~l~s~s~D---------------g~V~vwdl~~~~~~~~~~~~~~~ 179 (1208)
||.. ++.... ... ....+.+++++|+|++.++...+ +.|..||.. .+.
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~---------- 164 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM---------- 164 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE----------
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE----------
Confidence 9988 665433 221 12357899999999877766544 456666543 111
Q ss_pred eeccccccccccccceEEEEEeccCCCeEEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCcee---EEEeecCcC-C
Q 000961 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH----PTLPLIVSG-ADDRQVKLWRMN-ETKAW---EVDTLRGHM-N 249 (1208)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s----p~g~~L~sg-s~dg~I~iwd~~-~~~~~---~~~~l~~h~-~ 249 (1208)
. ....+......++++ |+++.++++ ..++.|.+|+.. +++.. ....+..+. .
T Consensus 165 -----------------~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 226 (314)
T 1pjx_A 165 -----------------I-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG 226 (314)
T ss_dssp -----------------E-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred -----------------E-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC
Confidence 0 111223446788999 999766555 567899999976 34321 122334443 5
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEEC
Q 000961 250 NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 250 ~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
.+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++++|+++.|.+++.
T Consensus 227 ~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence 6889999999998888888899999998877777777766678999999999996655553
No 215
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=4.8e-10 Score=128.13 Aligned_cols=284 Identities=10% Similarity=0.042 Sum_probs=181.7
Q ss_pred EEEEcCCCEEEEEEC-----CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEE----------CCCcEEEEE
Q 000961 57 VHFHKSQPLFVSGGD-----DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSAS----------DDQTIRIWN 121 (1208)
Q Consensus 57 l~fsp~~~~Lasgs~-----Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s----------~Dg~I~iwd 121 (1208)
....|+++.+.+... ++.|.+.|..+++.+.++.....+ . +.++||++++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789998887765 679999999999999998765555 4 99999999888776 367899999
Q ss_pred CCCCeEEEEEecCC-------CCEEEEEEeeCCCEEEEEEC--CCeEEEEECCCCccccccCCCcceeeccccccccccc
Q 000961 122 WQSRTCISVLTGHN-------HYVMCASFHPKEDLVVSASL--DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~-------~~V~~l~~~p~~~~l~s~s~--Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1208)
..+++.+..+.... .....+.|+|+|++++++.. ++.|.++|+.+.+.....+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~------------------ 177 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD------------------ 177 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE------------------
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE------------------
Confidence 99999988875321 24557899999999998874 6899999999876543211
Q ss_pred cceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeecCc----CCCeE-EEEEc-cCCCEEEE
Q 000961 193 DAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTLRGH----MNNVS-CVMFH-AKQDIIVS 265 (1208)
Q Consensus 193 ~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~-~~~~~~~~l~~h----~~~V~-~l~~s-p~g~~l~s 265 (1208)
. .+. ...+....+.+++.+.||.+.+.++.+ ++. ......+ ..++. ...|. ++|++++
T Consensus 178 -------v----~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v--~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~- 242 (386)
T 3sjl_D 178 -------V----PDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPEDEFLINHPAYSQKAGRLVW- 242 (386)
T ss_dssp -------C----CSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCC--EEEECCCCSCTTSCBCSCCEEETTTTEEEE-
T ss_pred -------C----CCc-ceeecCCCceeEEECCCCCEEEEECCCCCeE--EEeecceeccccccccccceeEcCCCcEEE-
Confidence 0 000 112222334555666677777777655 332 1111111 11221 23554 5775444
Q ss_pred EeCCCcEEEEeCCCCee--EEEeec----------CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEE
Q 000961 266 NSEDKSIRVWDVTKRTG--VQTFRR----------EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLF 333 (1208)
Q Consensus 266 gs~dg~I~vwd~~~~~~--~~~~~~----------~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~ 333 (1208)
.+.+|.|.+.|+.++.. ...+.. ..+....++++++++.+.+....+- -+. ...
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~-~~~--hk~----------- 308 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD-EWR--HKT----------- 308 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC-TTC--TTS-----------
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc-ccc--cCC-----------
Confidence 56689999999876542 222210 0112223555666665554321000 000 000
Q ss_pred EEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC
Q 000961 334 YAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD 399 (1208)
Q Consensus 334 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~ 399 (1208)
..++|.++|..+++.+..+.+.. .+.+++++||++..++++...++.+.+++....
T Consensus 309 --~~~~V~viD~~t~kv~~~i~vg~--------~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 309 --ASRFVVVLDAKTGERLAKFEMGH--------EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp --CEEEEEEEETTTCCEEEEEEEEE--------EECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred --CCCEEEEEECCCCeEEEEEECCC--------CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 13578899999999887777653 678999999998444454446789999998754
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.31 E-value=1.1e-10 Score=134.12 Aligned_cols=259 Identities=11% Similarity=0.007 Sum_probs=175.4
Q ss_pred CCEEEEEEeCCCCEEEEEe--cCCeEEEEECCCCeEEEEe-------cccccCEEEEEEEcCCCEEEEEEC-----CCeE
Q 000961 10 NRVKGLSFHSKRPWILASL--HSGVIQLWDYRMGTLIDRF-------DEHDGPVRGVHFHKSQPLFVSGGD-----DYKI 75 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~--~dg~I~iWd~~~g~~i~~l-------~~h~~~V~~l~fsp~~~~Lasgs~-----Dg~I 75 (1208)
..+..++++|+|+.+++.. .++.++||.+.+++.. .+ ..|-..+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6899999999999888863 2343566665566543 22 235568999999999987776543 5799
Q ss_pred EEEECCCCeEEEEEccC------CCCEEEEEEcCCCCEEEEE-E---CCCcEEEEECCCCeEEEEEecCCCCEE-EEEEe
Q 000961 76 KVWNYKMHRCLFTLLGH------LDYIRTVQFHHEYPWIVSA-S---DDQTIRIWNWQSRTCISVLTGHNHYVM-CASFH 144 (1208)
Q Consensus 76 ~vWd~~~~~~~~~l~~h------~~~I~~v~fs~d~~~l~s~-s---~Dg~I~iwd~~s~~~i~~l~~h~~~V~-~l~~~ 144 (1208)
.+||+.+++.+.++..+ ...+..+++++++..++.+ + .++.|.+||+.+++....+.+|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999877766432 2356889999865555444 4 578999999998888777765432111 13455
Q ss_pred eCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 145 PKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 145 p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
+++..+.+.+.++.+..|. ..++.++|+|+++.|+++..
T Consensus 176 ~~g~~~~~~~~~g~~~~~~-----------------------------------------~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH-----------------------------------------LGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp ETTEECBEECTTSCEECCC-----------------------------------------CCEEEEEECTTSCEEEEEES
T ss_pred ECCEEEEeccCCCceecee-----------------------------------------cccceeEeccCCCEEEEEeC
Confidence 5666666666676665442 23567999999998888877
Q ss_pred CC-cEEEEECC---CCce-----eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC-CCCEE
Q 000961 225 DR-QVKLWRMN---ETKA-----WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE-HDRFW 294 (1208)
Q Consensus 225 dg-~I~iwd~~---~~~~-----~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~-~~~i~ 294 (1208)
++ .+..++.. .... .......++......++++++|.++++...++.|.+||..+++........ .....
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~ 294 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTD 294 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEE
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCC
Confidence 66 44444321 1110 000011133445678999999999999989999999998566643333322 34588
Q ss_pred EEEEeCCCCEEEEEEC
Q 000961 295 ILASHPEMNLLAAGHD 310 (1208)
Q Consensus 295 ~la~sp~~~~la~g~~ 310 (1208)
.+++.+++.++++...
T Consensus 295 ~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 295 SFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp EEEECTTSCEEEEECC
T ss_pred eeEECCCCcEEEEeCc
Confidence 9999999988777654
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.1e-09 Score=120.63 Aligned_cols=233 Identities=10% Similarity=0.086 Sum_probs=158.2
Q ss_pred cCCCCEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeE
Q 000961 7 TKSNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC 85 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~-~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~ 85 (1208)
.+..---+..|+|++. ++++...++.|..||..+++. ..+ .+...+.+++++++++++++ . ++.|.+||.++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 4445567899999655 555555688999999887765 333 34567999999999995554 4 56899999988765
Q ss_pred EEEEcc----CCCCEEEEEEcCCCCEEEEEECC---------CcEEEEECCC-CeEEEEEecCCCCEEEEEEeeCCCEEE
Q 000961 86 LFTLLG----HLDYIRTVQFHHEYPWIVSASDD---------QTIRIWNWQS-RTCISVLTGHNHYVMCASFHPKEDLVV 151 (1208)
Q Consensus 86 ~~~l~~----h~~~I~~v~fs~d~~~l~s~s~D---------g~I~iwd~~s-~~~i~~l~~h~~~V~~l~~~p~~~~l~ 151 (1208)
...... ....+..++++|+|.++++.... ..-.+|.+.. ++... +..+......++|+|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEE
Confidence 433321 12357889999999966654322 2345555442 33332 333345578899999998765
Q ss_pred EE-ECCCeEEEEECC--CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcE
Q 000961 152 SA-SLDQTVRVWDIG--ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 228 (1208)
Q Consensus 152 s~-s~Dg~V~vwdl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I 228 (1208)
.+ +.++.|.+|++. ++.... ......+..+......++++++|++.++....+.|
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~----------------------~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISN----------------------RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEE----------------------EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred EecCCCCcEEEEeccCCCCcccC----------------------cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 54 557899999874 222100 00111222334567889999999988888888899
Q ss_pred EEEECCCCceeEEEeecCcCCCeEEEEEc-cCCCEEEEEeC
Q 000961 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFH-AKQDIIVSNSE 268 (1208)
Q Consensus 229 ~iwd~~~~~~~~~~~l~~h~~~V~~l~~s-p~g~~l~sgs~ 268 (1208)
..||..+++. +..+..+...+++++|. |+++.|.+++.
T Consensus 223 ~~~d~~tG~~--~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 223 IRLDPVTGKR--LQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECTTTCCE--EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEcCCCceE--EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 9999988776 55666666789999998 88877766554
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=1.6e-10 Score=146.07 Aligned_cols=243 Identities=10% Similarity=0.071 Sum_probs=166.0
Q ss_pred cCCCCEEEEEEeCCCCEEEEEec-----CCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCC--------
Q 000961 7 TKSNRVKGLSFHSKRPWILASLH-----SGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDY-------- 73 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~-----dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg-------- 73 (1208)
+|...+.+++|||||++||.+.. ...|++||+.+|+.+... .+......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 45567899999999999996542 247999999999865431 111123578999 999999888774
Q ss_pred -----eEEEEECCCCe----EEEEEcc-CCCCEEEEEEcCCCCEEEEEEC----CCcEEEEECCCCe-EEEEEecCCCCE
Q 000961 74 -----KIKVWNYKMHR----CLFTLLG-HLDYIRTVQFHHEYPWIVSASD----DQTIRIWNWQSRT-CISVLTGHNHYV 138 (1208)
Q Consensus 74 -----~I~vWd~~~~~----~~~~l~~-h~~~I~~v~fs~d~~~l~s~s~----Dg~I~iwd~~s~~-~i~~l~~h~~~V 138 (1208)
.|++|++.++. ++..... |...+..+.|+||+++|+.... ++.|++||+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 49999998754 3444444 5566889999999998865443 2589999998763 345566666665
Q ss_pred EEEEEeeCCCEEEEEEC-C---CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC
Q 000961 139 MCASFHPKEDLVVSASL-D---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (1208)
Q Consensus 139 ~~l~~~p~~~~l~s~s~-D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (1208)
... |+++++.|+..+. + +.|..+|+.+..... .. .+..|...+. .|++
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~------------------------~~-~l~~~~~~~~--~~s~ 335 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH------------------------WR-DLIPERQQVL--TVHS 335 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG------------------------CE-EEECCCSSCE--EEEE
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc------------------------cE-EEecCCCCEE--EEEE
Confidence 555 6677766665553 2 578899987643211 01 2334444554 8889
Q ss_pred CCCEEEEEeCCC---cEEEEECCCCceeEEEeec-CcCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCee
Q 000961 215 TLPLIVSGADDR---QVKLWRMNETKAWEVDTLR-GHMNNVSCVMFHAKQDIIVSNSED----KSIRVWDVTKRTG 282 (1208)
Q Consensus 215 ~g~~L~sgs~dg---~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~~sp~g~~l~sgs~d----g~I~vwd~~~~~~ 282 (1208)
+++.|+....++ .|++|++.++.. ..+. ...+.+..+.++|+++.++....+ +++..||+.+++.
T Consensus 336 ~g~~lv~~~~~~g~~~l~~~d~~g~~~---~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 336 GSGYLFAEYMVDATARVEQFDYEGKRV---REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ETTEEEEEEEETTEEEEEEECTTSCEE---EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCEEEEEEEECCeeEEEEEECCCCee---EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 998887776544 688999886543 3332 234567778888888877665544 7899999877653
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=7.2e-09 Score=116.24 Aligned_cols=229 Identities=9% Similarity=0.040 Sum_probs=158.3
Q ss_pred cccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE
Q 000961 50 HDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI 128 (1208)
Q Consensus 50 h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i 128 (1208)
+..---+..|+|++. ++++...++.|..||..+++.. .+ .....+.+++++++++++++ . ++.|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 344456889999655 5566667899999999877652 33 24578999999999995544 4 568999999888764
Q ss_pred EEEec----CCCCEEEEEEeeCCCEEEEEECC---------CeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 129 SVLTG----HNHYVMCASFHPKEDLVVSASLD---------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 129 ~~l~~----h~~~V~~l~~~p~~~~l~s~s~D---------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
..... ....+..++++|+|++.++.... ..-.+|.+.....
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-------------------------- 140 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-------------------------- 140 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--------------------------
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--------------------------
Confidence 43332 12357889999999866654321 2234444432110
Q ss_pred EEEEEeccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECC--CCceeE---EEeecCcCCCeEEEEEccCCCEEEEEeCC
Q 000961 196 VKYVLEGHDRGVNWAAFHPTLPLIVS-GADDRQVKLWRMN--ETKAWE---VDTLRGHMNNVSCVMFHAKQDIIVSNSED 269 (1208)
Q Consensus 196 ~~~~~~~h~~~V~~l~~sp~g~~L~s-gs~dg~I~iwd~~--~~~~~~---~~~l~~h~~~V~~l~~sp~g~~l~sgs~d 269 (1208)
.. ....+....+.++|+|+++.|+. .+.++.|.+|++. ++.... ...+..+...+..++++++|++.++...+
T Consensus 141 ~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 141 VK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred EE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC
Confidence 01 11122344678999999987654 4557889999873 443211 22233344678899999999988888888
Q ss_pred CcEEEEeCCCCeeEEEeecCCCCEEEEEEe-CCCCEEEEEE
Q 000961 270 KSIRVWDVTKRTGVQTFRREHDRFWILASH-PEMNLLAAGH 309 (1208)
Q Consensus 270 g~I~vwd~~~~~~~~~~~~~~~~i~~la~s-p~~~~la~g~ 309 (1208)
+.|.+||..+++.+..+..+...+++++|. |+++.|.+++
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 899999999899998888877789999998 8887666554
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.24 E-value=7.1e-11 Score=135.65 Aligned_cols=179 Identities=8% Similarity=-0.008 Sum_probs=137.0
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCe---------EEE-EecccccCEEEEEEEcCCCEEEEEECCCeEEEEEC
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGT---------LID-RFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~---------~i~-~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~ 80 (1208)
+++.+++++.+.++++|+.++ +.+|++.+.+ ... ....+.+ |+.++| ++.+|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999998875 6669865433 111 1224566 999999 89999999 7899999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 81 KMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
.+.........|...+.++.+.+.. +++++.||+|.+||+.++.... +...|+|++|+|+| ++.|..||+++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 8776666677788889988887653 8899999999999999887654 34579999999999 78899999999
Q ss_pred EEECCCCcc--ccccCCCcceeeccccccccccccceEEEEEe---ccCCCeEEEEEcCCCCEEEEEe
Q 000961 161 VWDIGALRK--KTVSPADDILRLSQMNTDLFGGVDAVVKYVLE---GHDRGVNWAAFHPTLPLIVSGA 223 (1208)
Q Consensus 161 vwdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~g~~L~sgs 223 (1208)
+|+..+... +...+... .+. +|...|.++.|.+++.++++-+
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp---------------------~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPS---------------------ELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEETTEEEEEEEECCCH---------------------HHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEcCCCccccccceecCCc---------------------ccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 998876552 11111000 012 3678899999999988877643
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=2.4e-09 Score=125.77 Aligned_cols=228 Identities=8% Similarity=0.045 Sum_probs=158.4
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC--cEEEEECCCCeEEEE
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ--TIRIWNWQSRTCISV 130 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg--~I~iwd~~s~~~i~~ 130 (1208)
....|+|+++++++++...++.|++||..++........ ..... ++|++++..|+++..++ .|.+|+..++.....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 578999999999888887889999999988777655544 33334 99999999999988866 788888876554444
Q ss_pred E----ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCC
Q 000961 131 L----TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRG 206 (1208)
Q Consensus 131 l----~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 206 (1208)
+ ..+...+.+++++|++..|+++..++.|+.||..+......... ...++...
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-----------------------~~~g~~~~ 266 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-----------------------ELSGSLGT 266 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-----------------------CCCSCCCC
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-----------------------cccCCCCC
Confidence 4 22456678899999655666677889999999876432110000 01111111
Q ss_pred --eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEeecCc---------------CCCeEEEEEccCCCEEEEEe-
Q 000961 207 --VNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTLRGH---------------MNNVSCVMFHAKQDIIVSNS- 267 (1208)
Q Consensus 207 --V~~l~~sp~-g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h---------------~~~V~~l~~sp~g~~l~sgs- 267 (1208)
...++|+|+ +.++++-..++.|+.|+..... ..+.++ ......++++|+|+++++-+
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~----~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC----EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE----EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred CccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE----EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 138999995 5556666678899999877542 222222 24578999999999888877
Q ss_pred CCCcEEEEeCCCCeeEEEeecC---------------CCCEEEEEEeCCCCEEEEEEC
Q 000961 268 EDKSIRVWDVTKRTGVQTFRRE---------------HDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 268 ~dg~I~vwd~~~~~~~~~~~~~---------------~~~i~~la~sp~~~~la~g~~ 310 (1208)
.++.|+.|++.++... ++..+ -...+.+++++++.++++...
T Consensus 343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 8899999998777643 33322 134778888888776666543
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=1.4e-09 Score=122.60 Aligned_cols=234 Identities=9% Similarity=0.014 Sum_probs=159.2
Q ss_pred eEeecCCCCEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 3 TKFETKSNRVKGLSFHSKRP-WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~-~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
..+..+.....+..|+|+|+ ++++...++.|..|+. +++ ...+..+...+.+++++++|+++++...++.|.+|+..
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 45666777889999999998 5566667899999997 555 34555567779999999999977666666899999986
Q ss_pred CCeEEEEEcc----CCCCEEEEEEcCCCCEEEE----EEC-------------CCcEEEEECCCCeEEEEEecCCCCEEE
Q 000961 82 MHRCLFTLLG----HLDYIRTVQFHHEYPWIVS----ASD-------------DQTIRIWNWQSRTCISVLTGHNHYVMC 140 (1208)
Q Consensus 82 ~~~~~~~l~~----h~~~I~~v~fs~d~~~l~s----~s~-------------Dg~I~iwd~~s~~~i~~l~~h~~~V~~ 140 (1208)
++....... ....+..+++.++|...++ +.. .+.|..||..+++..... .......
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~g 192 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNG 192 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcc
Confidence 543222211 1234667999999997776 321 256778887666654433 3456788
Q ss_pred EEEeeCCCEEEEEECC------CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC
Q 000961 141 ASFHPKEDLVVSASLD------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP 214 (1208)
Q Consensus 141 l~~~p~~~~l~s~s~D------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (1208)
++|+|+++.|+.+... +.|.+|++....... ..............+++++
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~------------------------~~~~~~~~~~~pdgi~~d~ 248 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHD------------------------RRHFASVPDGLPDGFCVDR 248 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEE------------------------EEEEECCSSSCCCSEEECT
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccC------------------------CeEEEECCCCCCCeEEECC
Confidence 9999999988887765 689999976532000 0001111233345688999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCc
Q 000961 215 TLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKS 271 (1208)
Q Consensus 215 ~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~ 271 (1208)
+|++. +++.+ .|.+|+... +. +..+..+. .+.+++|+|+++.|..++.++.
T Consensus 249 ~G~lw-v~~~~-gv~~~~~~g-~~--~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 249 GGWLW-SSSGT-GVCVFDSDG-QL--LGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp TSCEE-ECCSS-EEEEECTTS-CE--EEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CCCEE-EecCC-cEEEECCCC-CE--EEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 99844 44444 499999854 43 33444333 5889999999998888887653
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=2e-10 Score=131.92 Aligned_cols=174 Identities=12% Similarity=0.085 Sum_probs=136.0
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEEEECCCCe-----------EEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-----------CLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-----------~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd 121 (1208)
+++.+++++...++++|+.+ .+++|++++.+ ..... .+.. |+.++| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68999999999999999998 56669865332 11222 3566 999999 88999998 789999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 122 WQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 122 ~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
+.+.........|...+.++.+.+. .+++++.||.|.+||+.+....
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~------------------------------- 159 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK------------------------------- 159 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-------------------------------
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-------------------------------
Confidence 9877766667778888988877654 3888999999999999864321
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEee------c---CcCCCeEEEEEccCCCEEEEEe
Q 000961 202 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL------R---GHMNNVSCVMFHAKQDIIVSNS 267 (1208)
Q Consensus 202 ~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l------~---~h~~~V~~l~~sp~g~~l~sgs 267 (1208)
.+...|++++|||+| ++.|..||.+++|+..........++ . +|...|.++.|.+++.++++-+
T Consensus 160 ~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 160 QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 134579999999999 78899999999998887763112223 2 4778999999999998887644
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=2.3e-08 Score=113.73 Aligned_cols=228 Identities=8% Similarity=-0.032 Sum_probs=152.6
Q ss_pred CCEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE
Q 000961 10 NRVKGLSFHSKRP-WILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 10 ~~V~~lafspdg~-~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1208)
.-..+.+|+|++. ++++...++.|..||..+++.. .+. +...+.+++|+++++++++. .+ .|.+||..+++....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 3457899999755 4555556789999998887643 232 35679999999999877754 44 599999988775433
Q ss_pred Ecc----CCCCEEEEEEcCCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCC
Q 000961 89 LLG----HLDYIRTVQFHHEYPWIVSASD------DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQ 157 (1208)
Q Consensus 89 l~~----h~~~I~~v~fs~d~~~l~s~s~------Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg 157 (1208)
... ....+..+.++|+|.++++... .+.|..++ +++... +..+......++|+|+++.++.+. .++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 221 1235889999999986665442 24566666 555433 322334578899999998776554 568
Q ss_pred eEEEEECC--CC-ccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000961 158 TVRVWDIG--AL-RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (1208)
Q Consensus 158 ~V~vwdl~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~ 234 (1208)
.|.+||+. ++ .... ......+.........++++++|.+.++...++.|.+|+..
T Consensus 202 ~I~~~d~~~~~Gl~~~~----------------------~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGK----------------------AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEEEEBCTTTCCBSSC----------------------CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEEEEcccccCCcccC----------------------ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 99999985 32 2100 00011111233446789999999887777777889999984
Q ss_pred CCceeEEEeecCcCCCeEEEEEc-cCCCEEEEEeCC
Q 000961 235 ETKAWEVDTLRGHMNNVSCVMFH-AKQDIIVSNSED 269 (1208)
Q Consensus 235 ~~~~~~~~~l~~h~~~V~~l~~s-p~g~~l~sgs~d 269 (1208)
++. +..+..+...+++++|+ |+++.|++++..
T Consensus 260 -g~~--~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 260 -GNH--IARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -CCE--EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -CCE--EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 443 44555556679999998 888777655443
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.16 E-value=2e-09 Score=125.32 Aligned_cols=259 Identities=7% Similarity=-0.003 Sum_probs=174.5
Q ss_pred EeecCCCCEEEEEEeCCCCEEEEEe----------cCCeEEEEECCCCeEEEEeccc-------ccCEEEEEEEcCCCEE
Q 000961 4 KFETKSNRVKGLSFHSKRPWILASL----------HSGVIQLWDYRMGTLIDRFDEH-------DGPVRGVHFHKSQPLF 66 (1208)
Q Consensus 4 ~l~~h~~~V~~lafspdg~~Lasg~----------~dg~I~iWd~~~g~~i~~l~~h-------~~~V~~l~fsp~~~~L 66 (1208)
++..-..+ .+++||||++|+++. .++.|.++|..+++.+.++.-. ...-..+.|+|||+++
T Consensus 114 ~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~l 191 (426)
T 3c75_H 114 MTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNL 191 (426)
T ss_dssp EEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEE
T ss_pred EEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEE
Confidence 34433344 899999999998886 3678999999999998877421 1234578999999999
Q ss_pred EEEEC--CCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEE----ecCCCCE-
Q 000961 67 VSGGD--DYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEY-PWIVSASDDQTIRIWNWQSRTCISVL----TGHNHYV- 138 (1208)
Q Consensus 67 asgs~--Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~-~~l~s~s~Dg~I~iwd~~s~~~i~~l----~~h~~~V- 138 (1208)
.++.. ++.|.|.|..+++.+.++.... . ....|++ ..+++.+.||.+.+.+..+++..... .....++
T Consensus 192 yV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~ 267 (426)
T 3c75_H 192 LFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLI 267 (426)
T ss_dssp EEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBC
T ss_pred EEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCcee
Confidence 98874 5899999999999998886322 1 2333433 45667777888888888666554322 1111111
Q ss_pred EEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCE
Q 000961 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218 (1208)
Q Consensus 139 ~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 218 (1208)
..+.|.+++..++..+..+.|.+.|..+.......+ +..........+ . ...+...++++|+++.
T Consensus 268 ~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~----~~~~~~~~i~~g--------~---~p~g~~~va~s~dg~r 332 (426)
T 3c75_H 268 NHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP----IEALTEAERADD--------W---RPGGWQQTAYHRQSDR 332 (426)
T ss_dssp SCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC----EESSCTTTGGGT--------E---EECSSSCEEEEGGGTE
T ss_pred eEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee----eeeccccccccc--------c---ccCCceeeEEcCCCCE
Confidence 235678888888888888999999986543221100 000000000000 0 0112223689999888
Q ss_pred EEEEeC----------CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCeeEEEe
Q 000961 219 IVSGAD----------DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNS-EDKSIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 219 L~sgs~----------dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~-~l~sgs-~dg~I~vwd~~~~~~~~~~ 286 (1208)
+++... ++.|.++|..+.+. +.++.. .....++.|+|+|+ ++++.. .++.|.++|+.+++.+.++
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~T~kv--v~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAETGER--INKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEecccccccccCCCCEEEEEECCCCeE--EEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 777642 35799999999987 444432 22578999999999 888877 5899999999999999887
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=6.6e-09 Score=117.01 Aligned_cols=239 Identities=8% Similarity=-0.045 Sum_probs=160.6
Q ss_pred eEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEE
Q 000961 42 TLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW 120 (1208)
Q Consensus 42 ~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iw 120 (1208)
..+..+..+.....+..|+|+++ +++++..++.|..|+. +++ ...+..+...+..++++++|+.+++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 34444555566678899999998 5666677899999998 444 34555577789999999999866665566889999
Q ss_pred ECCCCeEEEEEecC----CCCEEEEEEeeCCCEEEE----EEC-------------CCeEEEEECCCCccccccCCCcce
Q 000961 121 NWQSRTCISVLTGH----NHYVMCASFHPKEDLVVS----ASL-------------DQTVRVWDIGALRKKTVSPADDIL 179 (1208)
Q Consensus 121 d~~s~~~i~~l~~h----~~~V~~l~~~p~~~~l~s----~s~-------------Dg~V~vwdl~~~~~~~~~~~~~~~ 179 (1208)
+.. ++........ ...+..++++|+|++.++ |+. .+.|..||..+++...
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~-------- 183 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR-------- 183 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE--------
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE--------
Confidence 986 5533222111 134667999999987776 321 2456666654332110
Q ss_pred eeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEEee-cCcCCCeE
Q 000961 180 RLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD------RQVKLWRMNETKAWEVDTL-RGHMNNVS 252 (1208)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d------g~I~iwd~~~~~~~~~~~l-~~h~~~V~ 252 (1208)
.. .....+.++|+|+++.|+++... +.|.+|++..........+ ....+.+.
T Consensus 184 -------------------~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd 242 (305)
T 3dr2_A 184 -------------------MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD 242 (305)
T ss_dssp -------------------EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCC
T ss_pred -------------------Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCC
Confidence 11 22456789999999988777665 6899999876542111111 12234566
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeE
Q 000961 253 CVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVF 316 (1208)
Q Consensus 253 ~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~ 316 (1208)
.++++++|++.++ +.+ .|.+|+. +++.+..+..+. .+..++|+|+++.|.+++.+++..+
T Consensus 243 gi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 243 GFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp SEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred eEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 7899999995444 444 4999997 577777776554 5788999999988888877665444
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=2.2e-09 Score=122.95 Aligned_cols=275 Identities=7% Similarity=-0.078 Sum_probs=181.1
Q ss_pred CCCEEEEEec-CC----eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEE----------CCCeEEEEECCCCe
Q 000961 20 KRPWILASLH-SG----VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGG----------DDYKIKVWNYKMHR 84 (1208)
Q Consensus 20 dg~~Lasg~~-dg----~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs----------~Dg~I~vWd~~~~~ 84 (1208)
...++.+... ++ .|.+.|..+++.+.++.....+ .+.++|+++++.++. .++.|.+||..+++
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 3345555543 33 8899999999999999766667 799999999888876 36899999999999
Q ss_pred EEEEEccC-------CCCEEEEEEcCCCCEEEEEEC--CCcEEE--EECCCCeEEEEEecCCCCEEEEEEeeCC-CEEEE
Q 000961 85 CLFTLLGH-------LDYIRTVQFHHEYPWIVSASD--DQTIRI--WNWQSRTCISVLTGHNHYVMCASFHPKE-DLVVS 152 (1208)
Q Consensus 85 ~~~~l~~h-------~~~I~~v~fs~d~~~l~s~s~--Dg~I~i--wd~~s~~~i~~l~~h~~~V~~l~~~p~~-~~l~s 152 (1208)
.+.++..+ ......+.|+|||++++++.. +..+.+ +|..+ +..+..... ....|++ ..+++
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~ 180 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYL 180 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEEC
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEE
Confidence 99998643 124568999999999999875 467888 99877 444432111 2234554 45566
Q ss_pred EECCCeEEEEECCC-----CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCc
Q 000961 153 ASLDQTVRVWDIGA-----LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 227 (1208)
Q Consensus 153 ~s~Dg~V~vwdl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~ 227 (1208)
.+.||.+.+.|+.+ ++.... .. . .+.-...+. . ++++..++..+. +.
T Consensus 181 ~~~dg~~~~vd~~~~~~~~~~v~~~-~t-----------~-----------~i~vg~~P~---~-~~~~~~~~~vs~-~~ 232 (368)
T 1mda_H 181 GSCPASLAASDLAAAPAAAGIVGAQ-CT-----------G-----------AQNCSSQAA---Q-ANYPGMLVWAVA-SS 232 (368)
T ss_dssp CCCTTSCEEEECCSSCCCCEECCCC-SC-----------T-----------TSCBCSCCE---E-ETTTTEEEECBS-SC
T ss_pred EcCCCCEEEEECccccccCCeEEEE-ee-----------e-----------eeeCCCCcc---c-cccCCEEEEEcC-CE
Confidence 67788888888865 221100 00 0 000012232 3 566666666666 89
Q ss_pred EEEEECCCCceeEEEeecC-------c---CCCeEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCeeEEEeec
Q 000961 228 VKLWRMNETKAWEVDTLRG-------H---MNNVSCVMFHAKQDIIVSNSE---------DKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 228 I~iwd~~~~~~~~~~~l~~-------h---~~~V~~l~~sp~g~~l~sgs~---------dg~I~vwd~~~~~~~~~~~~ 288 (1208)
|.+.|..+.....+..+.- + ......+.++|+++.++++.. ++.+.++|+.+++.+.++..
T Consensus 233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v 312 (368)
T 1mda_H 233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312 (368)
T ss_dssp CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence 9999987543211222211 0 111122689999998886543 23567999999999888765
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEee
Q 000961 289 EHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPI 356 (1208)
Q Consensus 289 ~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~ 356 (1208)
.. ..+.++++||++.+.+.... .++.|.++|..+++.+..+..
T Consensus 313 g~-~p~gi~~s~Dg~~l~va~~~------------------------~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 313 GH-DSDAIIAAQDGASDNYANSA------------------------GTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EE-EECEEEECCSSSCEEEEEET------------------------TTTEEEEEESSSCEEEEECCC
T ss_pred CC-CcceEEECCCCCEEEEEccC------------------------CCCeEEEEECCCCcEEEEEEC
Confidence 43 67899999999854433310 167888999998887655443
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.14 E-value=1.3e-09 Score=137.61 Aligned_cols=228 Identities=9% Similarity=0.040 Sum_probs=148.5
Q ss_pred ccccCEEEEEEEcCCCEEEEEE-----CCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCc-------
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGG-----DDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQT------- 116 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs-----~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~------- 116 (1208)
+|...+.+++|||||++||.+. +...|++||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4566789999999999988543 33689999999998654311 11112467899 9999999888743
Q ss_pred ------EEEEECCCCe----EEEEEec-CCCCEEEEEEeeCCCEEEEEEC----CCeEEEEECCCCccccccCCCcceee
Q 000961 117 ------IRIWNWQSRT----CISVLTG-HNHYVMCASFHPKEDLVVSASL----DQTVRVWDIGALRKKTVSPADDILRL 181 (1208)
Q Consensus 117 ------I~iwd~~s~~----~i~~l~~-h~~~V~~l~~~p~~~~l~s~s~----Dg~V~vwdl~~~~~~~~~~~~~~~~~ 181 (1208)
|++|++.++. ++..... |...+.++.|+|+|++|+.... +..|.++|+.+.....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~---------- 273 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL---------- 273 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC----------
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce----------
Confidence 9999998764 3333334 5566889999999998865443 2489999987642110
Q ss_pred ccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEEeecCcCCCeEEEEEc
Q 000961 182 SQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD----DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH 257 (1208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~----dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~s 257 (1208)
..+..+....... ++++|..|+..+. .+.|..+++.++.......+..|...+. .|+
T Consensus 274 ----------------~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s 334 (693)
T 3iuj_A 274 ----------------LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVH 334 (693)
T ss_dssp ----------------EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEE
T ss_pred ----------------EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEE
Confidence 1233344444444 5666666655443 3679999998765311234555665555 899
Q ss_pred cCCCEEEEEeCCC---cEEEEeCCCCeeEEEeec-CCCCEEEEEEeCCCCEEEEE
Q 000961 258 AKQDIIVSNSEDK---SIRVWDVTKRTGVQTFRR-EHDRFWILASHPEMNLLAAG 308 (1208)
Q Consensus 258 p~g~~l~sgs~dg---~I~vwd~~~~~~~~~~~~-~~~~i~~la~sp~~~~la~g 308 (1208)
++++.|+....++ .|++||+..+. ...+.. ....+..+.+++++..++..
T Consensus 335 ~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 335 SGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp EETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred EECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEE
Confidence 9999887776544 68999987443 344432 23345566667776655544
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=4.2e-08 Score=111.57 Aligned_cols=221 Identities=9% Similarity=-0.039 Sum_probs=152.1
Q ss_pred EEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 000961 54 VRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT 132 (1208)
Q Consensus 54 V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~ 132 (1208)
..+..|+|++. ++++...++.|.+||..+++.. .+. ....+.++.|++++.++++. .+ .|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 46788999755 5556667889999999887643 232 35679999999999866654 44 59999998887644332
Q ss_pred c----CCCCEEEEEEeeCCCEEEEEEC------CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 133 G----HNHYVMCASFHPKEDLVVSASL------DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 133 ~----h~~~V~~l~~~p~~~~l~s~s~------Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
. ....+.++.++|+|++.++... .+.|..++ +++.. .+..
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~----------------------------~~~~ 176 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT----------------------------KLFA 176 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE----------------------------EEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE----------------------------EeeC
Confidence 1 1235889999999986665432 23455554 22110 1112
Q ss_pred cCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECC--CC-cee---EEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000961 203 HDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMN--ET-KAW---EVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sg-s~dg~I~iwd~~--~~-~~~---~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vw 275 (1208)
+....+.++|+|+++.++.+ +.++.|.+|+.. ++ ... ....+......+..++++++|.+.++...++.|.+|
T Consensus 177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 22346789999999877555 457889999986 44 211 122333344567889999999988877777889999
Q ss_pred eCCCCeeEEEeecCCCCEEEEEEe-CCCCEEEEEE
Q 000961 276 DVTKRTGVQTFRREHDRFWILASH-PEMNLLAAGH 309 (1208)
Q Consensus 276 d~~~~~~~~~~~~~~~~i~~la~s-p~~~~la~g~ 309 (1208)
|. +++.+..+..+...+.+++|+ +++..|.+++
T Consensus 257 d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 257 DT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 98 677777777777779999998 8887665554
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.09 E-value=1.9e-08 Score=126.23 Aligned_cols=328 Identities=10% Similarity=0.020 Sum_probs=190.2
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEecccccC----------E-EEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGP----------V-RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~----------V-~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
+..|++++.++.|.-+|..+|+.+-++..+... + ..++. .+..+++++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557788888899999999999999887543210 1 11222 3567888899999999999999998877
Q ss_pred ccC--CCCEEEEEEcC---CCCEEEEEE------CCCcEEEEECCCCeEEEEEecCC-----------------------
Q 000961 90 LGH--LDYIRTVQFHH---EYPWIVSAS------DDQTIRIWNWQSRTCISVLTGHN----------------------- 135 (1208)
Q Consensus 90 ~~h--~~~I~~v~fs~---d~~~l~s~s------~Dg~I~iwd~~s~~~i~~l~~h~----------------------- 135 (1208)
... ......+..+| ++ .+++++ .+|.|+.||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 11111111112 44 444443 36899999999999988775210
Q ss_pred --------CCEEEEEEeeCCCEEEEEECCCe-------------------EEEEECCCCccccccCCCcceeeccccccc
Q 000961 136 --------HYVMCASFHPKEDLVVSASLDQT-------------------VRVWDIGALRKKTVSPADDILRLSQMNTDL 188 (1208)
Q Consensus 136 --------~~V~~l~~~p~~~~l~s~s~Dg~-------------------V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1208)
.....++++|++.+++.++.++. |..+|..+++..-..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~--------------- 291 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY--------------- 291 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE---------------
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee---------------
Confidence 01125788888899999988764 888888876644211
Q ss_pred cccccceEEEEEeccC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeecC------------
Q 000961 189 FGGVDAVVKYVLEGHD-------RGVNWAAFHPTLP---LIVSGADDRQVKLWRMNETKAWEVDTLRG------------ 246 (1208)
Q Consensus 189 ~~~~~~~~~~~~~~h~-------~~V~~l~~sp~g~---~L~sgs~dg~I~iwd~~~~~~~~~~~l~~------------ 246 (1208)
....|. ..........+|+ .++.++.+|.++++|..+++......+..
T Consensus 292 ----------~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~ 361 (689)
T 1yiq_A 292 ----------QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTG 361 (689)
T ss_dssp ----------ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTT
T ss_pred ----------ecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCC
Confidence 111111 1111222222454 78889999999999999988631111110
Q ss_pred --------------cC-----------CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEE---EEEE
Q 000961 247 --------------HM-----------NNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFW---ILAS 298 (1208)
Q Consensus 247 --------------h~-----------~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~---~la~ 298 (1208)
.. ..-..++++|+..++++.+.+....++...... .+......+. .+..
T Consensus 362 ~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 362 RPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP---KRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp EEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC---CCCSCTTSCCCSSEECC
T ss_pred CcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc---cccccccccccCccccc
Confidence 00 011237889988888887655444444322110 0000000000 0000
Q ss_pred eC-------------CCCEEEEEECCCeeeEeeCCCc----ceEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCC
Q 000961 299 HP-------------EMNLLAAGHDSGMIVFKLERER----PAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPG 360 (1208)
Q Consensus 299 sp-------------~~~~la~g~~~gi~v~~l~~~~----~~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~ 360 (1208)
.| ++.+.+.--..|-++|...... ..+...++.++++ .|+.++.||..+|+.+-...+....
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~ 518 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGV 518 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCc
Confidence 00 1222333333344445443322 1445566677777 7999999999999987665554322
Q ss_pred CCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 361 STSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 361 ~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
...-+.|..+|+..++...
T Consensus 519 ------~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 519 ------MAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp ------CSCCEEEEETTEEEEEEEE
T ss_pred ------ccCceEEEECCEEEEEEEe
Confidence 2234777888886655444
No 231
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.09 E-value=0.00013 Score=89.89 Aligned_cols=457 Identities=9% Similarity=-0.013 Sum_probs=271.7
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEec-ccccCEEEEEEEcCCCEEEEE-ECCCeEEEEECCCCeEEEEEccCCCCEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYKMHRCLFTLLGHLDYIRT 98 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~-~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd~~~~~~~~~l~~h~~~I~~ 98 (1208)
..+|+.+ ..+.|+..|+.+......+. ..-..+.+|+|++.+..|..+ ..++.|..+++........+.........
T Consensus 6 ~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 6 EAFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CCEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred CcEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 3456665 56789999987654433332 223467899999976665544 46789999998755433334333345678
Q ss_pred EEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC--CCeEEEEECCCCccccccCC
Q 000961 99 VQFHHEYPWIVSAS-DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVWDIGALRKKTVSPA 175 (1208)
Q Consensus 99 v~fs~d~~~l~s~s-~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~--Dg~V~vwdl~~~~~~~~~~~ 175 (1208)
+++.+.+..|+.+. ..+.|.+.++........+...-.....++++|....|+.... .+.|...++.+....
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~----- 159 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT----- 159 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-----
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-----
Confidence 88887766665554 4678999998755433333344456789999997666766653 467777777653221
Q ss_pred CcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCcCCCeEEE
Q 000961 176 DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254 (1208)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l 254 (1208)
.+...-...+.+++++++..|..+. ..+.|..+++...... .+.........+
T Consensus 160 -----------------------~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v~~~~l~~P~gl 213 (628)
T 4a0p_A 160 -----------------------TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---VIADDLPHPFGL 213 (628)
T ss_dssp -----------------------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECCSCEEEE
T ss_pred -----------------------EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---EeeccCCCceEE
Confidence 1112344578899999777666664 5678999998775531 222333455678
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEE-EeCC------------------------CCEEEEEE
Q 000961 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILA-SHPE------------------------MNLLAAGH 309 (1208)
Q Consensus 255 ~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la-~sp~------------------------~~~la~g~ 309 (1208)
++.. +.++++-...+.|...|..+++....+.........+. +++. +. ..+.+
T Consensus 214 av~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~-~~C~C 291 (628)
T 4a0p_A 214 TQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGG-FVCGC 291 (628)
T ss_dssp EEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTE-EEEEC
T ss_pred EEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCC-eeEEc
Confidence 8765 44555555678899999877766555543322222322 2221 11 11112
Q ss_pred CCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcce-eeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCC
Q 000961 310 DSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDT-QVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG 388 (1208)
Q Consensus 310 ~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~ 388 (1208)
..|. .+.............|+++....|+-..+...... ..+++. + ...+..+.|.+.+..+..+ +...
T Consensus 292 ~~g~---~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~--~----~~~~~~ld~d~~~~~iy~s-D~~~ 361 (628)
T 4a0p_A 292 PAHY---SLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH--S----LRNVRAIDYDPLDKQLYWI-DSRQ 361 (628)
T ss_dssp STTC---EECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCT--T----CSCEEEEEEETTTTEEEEE-ETTT
T ss_pred CCCc---EecccCCcCccccceeeeeccceEEEEecccccCceEEEEeh--h----cCCceEEEEecCCCeEEEE-ecCc
Confidence 2221 22212112222346777777788887776543221 112221 1 1267889999988877655 4456
Q ss_pred CEEEEEEccCCCCCCCccc-cc--ccCCceEEEEEEeCCc-EEEEEcCCCEEEEEecCCceeeeecCC--cceEEEEEeC
Q 000961 389 GSYELYVIPKDSIGRGDSV-QD--AKKGLGGSAIFIARNR-FAVLDKSSNQVLVKNLKNEVVKKSILP--IAADAIFYAG 462 (1208)
Q Consensus 389 g~v~l~~l~~~~~~~~~~~-~~--~~~~~i~~~~fs~d~~-~l~~~~~dg~I~Iwdl~~~~~~~l~~~--~~v~~i~~s~ 462 (1208)
+.|..+...+.....+... .. ........+++...++ +.++.+..+.|.+.++++.....+... ....+|++.|
T Consensus 362 ~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp 441 (628)
T 4a0p_A 362 NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNP 441 (628)
T ss_dssp TEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEET
T ss_pred ceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEec
Confidence 7777777654322111100 00 1233567888887754 556777788999999998766555432 2789999999
Q ss_pred -CccEEEEe--CC--eEEEEEcCCCeEEEEEeC--CCeeEEEECCCCCEEEEEeC--CeEEEEecCcc
Q 000961 463 -TGNLLCRA--ED--RVVIFDLQQRLVLGDLQT--PFVKYVVWSNDMESVALLSK--HAIIIASKKLV 521 (1208)
Q Consensus 463 -dg~~Las~--dg--~v~lwdl~~~~~l~~~~~--~~v~~v~ws~dg~~la~~s~--~~i~i~~~~~~ 521 (1208)
.|.+..+. .. .|...++........... .....+++++++..|..+.. +.|..++.+-.
T Consensus 442 ~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 442 EKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 57666663 22 677777754333222222 45678888888777766655 34666655443
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=1.8e-08 Score=126.22 Aligned_cols=330 Identities=12% Similarity=0.042 Sum_probs=189.6
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEeccccc-----------CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDG-----------PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~-----------~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
+..|++++.++.|.-+|..+|+.+-++..... ....+++ .+..+++++.|+.|..+|..+|+.+.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45677777889999999999999987754321 0122333 4567888899999999999999999888
Q ss_pred ccC-C----CCEEEEEEcCCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCC---------------------
Q 000961 90 LGH-L----DYIRTVQFHHEYPWIVSASD------DQTIRIWNWQSRTCISVLTGHNHY--------------------- 137 (1208)
Q Consensus 90 ~~h-~----~~I~~v~fs~d~~~l~s~s~------Dg~I~iwd~~s~~~i~~l~~h~~~--------------------- 137 (1208)
..+ . ..+.+--...+ ..+++++. ++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 11211101113 35555543 689999999999999887643211
Q ss_pred -----------EEEEEEeeCCCEEEEEECCC-------------------eEEEEECCCCccccccCCCcceeecccccc
Q 000961 138 -----------VMCASFHPKEDLVVSASLDQ-------------------TVRVWDIGALRKKTVSPADDILRLSQMNTD 187 (1208)
Q Consensus 138 -----------V~~l~~~p~~~~l~s~s~Dg-------------------~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 187 (1208)
...++++|+++.++.++.++ +|..+|..+++..-.
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~--------------- 298 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWH--------------- 298 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE---------------
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEE---------------
Confidence 12577889889999887764 477777776554321
Q ss_pred ccccccceEEEEEeccC-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEEeecC---------cC
Q 000961 188 LFGGVDAVVKYVLEGHD-------RGVNWAAFHPTL---PLIVSGADDRQVKLWRMNETKAWEVDTLRG---------HM 248 (1208)
Q Consensus 188 ~~~~~~~~~~~~~~~h~-------~~V~~l~~sp~g---~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~---------h~ 248 (1208)
+....|+ .....+....+| +.+++++.+|.++++|..+++......+.. ..
T Consensus 299 ----------~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g 368 (677)
T 1kb0_A 299 ----------YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHG 368 (677)
T ss_dssp ----------EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTS
T ss_pred ----------EecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCC
Confidence 1111111 112223333466 678899999999999999988632211110 00
Q ss_pred CCe------------------------EEEEEccCCCEEEEEeCCCcEEEEeCCC---CeeEEEeecC-CCCEEEEEE--
Q 000961 249 NNV------------------------SCVMFHAKQDIIVSNSEDKSIRVWDVTK---RTGVQTFRRE-HDRFWILAS-- 298 (1208)
Q Consensus 249 ~~V------------------------~~l~~sp~g~~l~sgs~dg~I~vwd~~~---~~~~~~~~~~-~~~i~~la~-- 298 (1208)
.++ ..++++|++.++++...+-...++.... +..-...... ........+
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 448 (677)
T 1kb0_A 369 KPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA 448 (677)
T ss_dssp CEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred ceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccc
Confidence 001 2568899888888876543333332210 0000000000 000000000
Q ss_pred ----e-CCCCEEEEEECCCeeeEeeCCCc----ceEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCCCCCCCCcCC
Q 000961 299 ----H-PEMNLLAAGHDSGMIVFKLERER----PAFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSP 368 (1208)
Q Consensus 299 ----s-p~~~~la~g~~~gi~v~~l~~~~----~~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i 368 (1208)
. +.+.+.+.--..+-++|...... ..+...++.++++ .++.+++||..+++.+..+.+.... ..
T Consensus 449 ~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~------~~ 522 (677)
T 1kb0_A 449 EPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV------VA 522 (677)
T ss_dssp SCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC------CS
T ss_pred ccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCc------cc
Confidence 0 01222222223344444443322 1344556666666 7899999999999987766654321 33
Q ss_pred eEEEEcCCCCEEEEEE
Q 000961 369 RTLSYSPTENAVLICS 384 (1208)
Q Consensus 369 ~~l~~spdg~~llv~~ 384 (1208)
.-+.|.++|+.+++..
T Consensus 523 ~p~~y~~~G~~~v~~~ 538 (677)
T 1kb0_A 523 APSTYMVDGRQYVSVA 538 (677)
T ss_dssp CCEEEEETTEEEEEEE
T ss_pred CCEEEEeCCEEEEEEe
Confidence 4467788887665543
No 233
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.06 E-value=1.1e-05 Score=99.42 Aligned_cols=458 Identities=10% Similarity=0.037 Sum_probs=261.3
Q ss_pred CCEEEEEecCCeEEEEECCCCe-EEEEecccccCEEEEEEEcCCCEEEEEE-CCCeEEEEECCCCeE-EEEEccCCCCEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGT-LIDRFDEHDGPVRGVHFHKSQPLFVSGG-DDYKIKVWNYKMHRC-LFTLLGHLDYIR 97 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~-~i~~l~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~vWd~~~~~~-~~~l~~h~~~I~ 97 (1208)
.++|+-+ ....|+..|+.... ........-....+++|++.+..|..+. ..+.|..+++..... ...+........
T Consensus 9 ~~~~~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~ 87 (619)
T 3s94_A 9 APLLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 87 (619)
T ss_dssp -CCEEEE-CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE
T ss_pred CceEEEe-ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC
Confidence 3445544 46678888876543 2222223344578999999777666554 467899999875432 233333346788
Q ss_pred EEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC--CCeEEEEECCCCccccccC
Q 000961 98 TVQFHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVWDIGALRKKTVSP 174 (1208)
Q Consensus 98 ~v~fs~d~~~l~s~-s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~--Dg~V~vwdl~~~~~~~~~~ 174 (1208)
.+++.+.+..|+.+ ...+.|.+.++............-.....+++.|.+..|+.+.. .+.|...++.+.....
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~--- 164 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--- 164 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE---
Confidence 99999966656555 45689999998765443333344455778999998766766653 3566666665422111
Q ss_pred CCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCcCCCeEE
Q 000961 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVSC 253 (1208)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~ 253 (1208)
.....-...+.+++++++..|..+. ..+.|...++.......+ ..+.......
T Consensus 165 ------------------------l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~--~~~~~~~P~g 218 (619)
T 3s94_A 165 ------------------------IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV--VKGSLPHPFA 218 (619)
T ss_dssp ------------------------EECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCC
T ss_pred ------------------------EEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE--EeCCCCCceE
Confidence 1112334568899998766666554 467788888876553211 1112223346
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEE-eC-------------------------CCCEEEE
Q 000961 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS-HP-------------------------EMNLLAA 307 (1208)
Q Consensus 254 l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~-sp-------------------------~~~~la~ 307 (1208)
+++..+ .++++-...+.|...|..+++....+.........+++ +| ......+
T Consensus 219 i~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C 297 (619)
T 3s94_A 219 LTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQC 297 (619)
T ss_dssp EEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEE
T ss_pred EEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceE
Confidence 677655 44455556778999998887765554433222223322 22 1001111
Q ss_pred EECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceee-EeecCCCCCCCCcCCeEEEEcCCCCEEEEEEec
Q 000961 308 GHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQV-IPIRRPGSTSLNQSPRTLSYSPTENAVLICSDV 386 (1208)
Q Consensus 308 g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~ 386 (1208)
.+..|..+- ...+.+.......|+++..+.|+..++.+...... +++.. ...+..++|.+.+..+.++. .
T Consensus 298 ~C~~g~~l~--~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~------l~~~~~ld~d~~~~~ly~sD-~ 368 (619)
T 3s94_A 298 ACPTGVKLL--ENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLED------IRHAIAIDYDPVEGYIYWTD-D 368 (619)
T ss_dssp ECCTTCCBC--TTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSC------CSSEEEEEEETTTTEEEEEE-T
T ss_pred eCCchheec--ccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccc------cCccEEEEEEcCCCeEEEEe-C
Confidence 222222110 01111222223467777888899889887543221 12211 12678899999777776654 3
Q ss_pred CCCEEEEEEccCCCCCCCcccccccCCceEEEEEEe-CCcEEEEEcCCCEEEEEecCCceeeeecCCc--ceEEEEEeCC
Q 000961 387 DGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIA-RNRFAVLDKSSNQVLVKNLKNEVVKKSILPI--AADAIFYAGT 463 (1208)
Q Consensus 387 ~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~-d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~--~v~~i~~s~d 463 (1208)
..+.|..++..+..... ...........+++.. .+++.++.+..+.|.+.++++.....+.... ...+|++.|.
T Consensus 369 ~~~~I~r~~~~g~~~~~---v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~ 445 (619)
T 3s94_A 369 EVRAIRRSFIDGSGSQF---VVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPM 445 (619)
T ss_dssp TTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETT
T ss_pred CCCeEEEEEcCCCccEE---EEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcC
Confidence 56777777776532211 1122223456788885 4567777777899999999976555554322 7899999996
Q ss_pred -ccEEEEe---CCeEEEEEcCCCeEEEEEe--CCCeeEEEECCCCCEEEEEeCC--eEEEEecCcc
Q 000961 464 -GNLLCRA---EDRVVIFDLQQRLVLGDLQ--TPFVKYVVWSNDMESVALLSKH--AIIIASKKLV 521 (1208)
Q Consensus 464 -g~~Las~---dg~v~lwdl~~~~~l~~~~--~~~v~~v~ws~dg~~la~~s~~--~i~i~~~~~~ 521 (1208)
|.+.++. ...|...++.......... ......++.++++..|..+... .|..++.+-.
T Consensus 446 ~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 446 VGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred CCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 6666664 2577777775432222222 2456788888877777666543 3655655433
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.99 E-value=3e-07 Score=106.62 Aligned_cols=239 Identities=7% Similarity=-0.019 Sum_probs=151.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEeccc---------ccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 000961 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEH---------DGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h---------~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~ 90 (1208)
++..+.+++.++.|..+|..+|+.+.++... ...+.+. ...++..+++++.++.|..+|..+++.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3567888888999999999999988766532 2233222 22245678888899999999999999887775
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCE-----EEEEEeeCCCEEEEEECCCeEEEEECC
Q 000961 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYV-----MCASFHPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 91 ~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V-----~~l~~~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
............ +..++.++.++.|..+|..+++.+.......... ...... +..+++++.++.|..+|..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence 443222222222 3478888899999999999999888776432211 112222 4578888889999999998
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR 245 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~ 245 (1208)
+++........... +. ............++ . .+..+++++.++.+..+|..+++. .....
T Consensus 207 tG~~~w~~~~~~~~----------~~--~~~~~~~~~~~~p~----~--~~~~v~~~~~~g~l~~~d~~tG~~--~w~~~ 266 (376)
T 3q7m_A 207 QGQMIWQQRISQAT----------GS--TEIDRLSDVDTTPV----V--VNGVVFALAYNGNLTALDLRSGQI--MWKRE 266 (376)
T ss_dssp TCCEEEEEECCC-----------------------CCCCCCE----E--ETTEEEEECTTSCEEEEETTTCCE--EEEEC
T ss_pred CCcEEEEEecccCC----------CC--cccccccccCCCcE----E--ECCEEEEEecCcEEEEEECCCCcE--Eeecc
Confidence 76543221100000 00 00000000001111 1 245778888899999999988875 22222
Q ss_pred CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee
Q 000961 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287 (1208)
Q Consensus 246 ~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~ 287 (1208)
......+.. ++..++.++.++.|..+|..+++.+....
T Consensus 267 --~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 267 --LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp --CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred --CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 223344443 36678888889999999999998877665
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.99 E-value=4.6e-09 Score=120.34 Aligned_cols=265 Identities=8% Similarity=-0.087 Sum_probs=167.9
Q ss_pred eEeecCCCCEEEEEEeCCCCEEEEEe----------cCCeEEEEECCCCeEEEEecccc-------cCEEEEEEEcCCCE
Q 000961 3 TKFETKSNRVKGLSFHSKRPWILASL----------HSGVIQLWDYRMGTLIDRFDEHD-------GPVRGVHFHKSQPL 65 (1208)
Q Consensus 3 ~~l~~h~~~V~~lafspdg~~Lasg~----------~dg~I~iWd~~~g~~i~~l~~h~-------~~V~~l~fsp~~~~ 65 (1208)
.++..-..+ .++++||+++++++. .++.|.+||..+++.+.++.-+. ..-..++|+|||++
T Consensus 60 ~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~ 137 (368)
T 1mda_H 60 GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137 (368)
T ss_dssp EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence 344444455 799999999999886 36889999999999999986431 23468999999999
Q ss_pred EEEEEC--CCeEEE--EECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEECCCcEEEEECCC-----CeEEEE----E
Q 000961 66 FVSGGD--DYKIKV--WNYKMHRCLFTLLGHLDYIRTVQFHHEYP-WIVSASDDQTIRIWNWQS-----RTCISV----L 131 (1208)
Q Consensus 66 Lasgs~--Dg~I~v--Wd~~~~~~~~~l~~h~~~I~~v~fs~d~~-~l~s~s~Dg~I~iwd~~s-----~~~i~~----l 131 (1208)
++++.. +..|.+ +|..+ +.++... +. ..+.|++. .+++.+.||.+.+.++.+ ++.+.. +
T Consensus 138 lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i 210 (368)
T 1mda_H 138 LLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ 210 (368)
T ss_dssp EEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred EEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeee
Confidence 998864 467888 99876 4444321 11 11234443 445566788888888876 433211 1
Q ss_pred ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE
Q 000961 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1208)
Q Consensus 132 ~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (1208)
.....+. . .+++..++..+. +.|.+.|..+........- .+....... . .. ...+...++
T Consensus 211 ~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~----~~~~~~~~~----~-----~~--~p~g~~~v~ 270 (368)
T 1mda_H 211 NCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAI----DGNESGRKA----D-----NF--RSAGFQMVA 270 (368)
T ss_dssp CBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCC----CSSCTHHHH----T-----TE--EECSSSCEE
T ss_pred eCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEE----Eeccccccc----c-----cc--ccCcceeeE
Confidence 1112333 3 666777777767 9999999865321110000 000000000 0 00 011222268
Q ss_pred EcCCCCEEEEEeC-C--------CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCC-EEEEEe-CCCcEEEEeCCCC
Q 000961 212 FHPTLPLIVSGAD-D--------RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQD-IIVSNS-EDKSIRVWDVTKR 280 (1208)
Q Consensus 212 ~sp~g~~L~sgs~-d--------g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~-~l~sgs-~dg~I~vwd~~~~ 280 (1208)
++|+++.++++.. . +.+.++|..+.+. +..+.... ....+.|+|+|+ ++++.. .++.|.++|+.++
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 9999998887643 2 3566999999886 44444322 588999999997 566666 5899999999999
Q ss_pred eeEEEeecCCCCEEEEEEeC
Q 000961 281 TGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 281 ~~~~~~~~~~~~i~~la~sp 300 (1208)
+.+.++.... ..+.+++.+
T Consensus 348 kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 348 QDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp EEEEECCCCS-CCCEEECCC
T ss_pred cEEEEEECCC-CCCEEEeec
Confidence 9999887443 345555543
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.97 E-value=5.4e-08 Score=122.06 Aligned_cols=282 Identities=7% Similarity=0.012 Sum_probs=175.2
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEeccc--ccCEEEEEEEc---CCCEEEEEE------CCCeEEEEECCCCeEEEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEH--DGPVRGVHFHK---SQPLFVSGG------DDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h--~~~V~~l~fsp---~~~~Lasgs------~Dg~I~vWd~~~~~~~~~l 89 (1208)
+..|++++.|+.|..+|..+|+.+-++... ......+..+| ++ .+++++ .+|.|..||..+|+.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 567888889999999999999998776532 11111111111 44 444443 3689999999999998877
Q ss_pred ccCC-------------------------------CCEEEEEEcCCCCEEEEEECCCc-------------------EEE
Q 000961 90 LGHL-------------------------------DYIRTVQFHHEYPWIVSASDDQT-------------------IRI 119 (1208)
Q Consensus 90 ~~h~-------------------------------~~I~~v~fs~d~~~l~s~s~Dg~-------------------I~i 119 (1208)
.... .....+++.|+...++.++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 01125788888889999887764 999
Q ss_pred EECCCCeEEEEEec--CC-------CCEEEEEEeeCCC---EEEEEECCCeEEEEECCCCccccccCCCc-ce--eec-c
Q 000961 120 WNWQSRTCISVLTG--HN-------HYVMCASFHPKED---LVVSASLDQTVRVWDIGALRKKTVSPADD-IL--RLS-Q 183 (1208)
Q Consensus 120 wd~~s~~~i~~l~~--h~-------~~V~~l~~~p~~~---~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~-~~--~~~-~ 183 (1208)
||..+|+.+..++. |. ..+.......+|+ .++.++.+|.++++|..+++.....+... .. .+. .
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 99999999988764 21 1222233333554 78899999999999999887653221110 00 000 0
Q ss_pred ccccc-cc-----cccceEEEEEeccCCC--eEEEEEcCCCCEEEEEeC-------------------------------
Q 000961 184 MNTDL-FG-----GVDAVVKYVLEGHDRG--VNWAAFHPTLPLIVSGAD------------------------------- 224 (1208)
Q Consensus 184 ~~~~~-~~-----~~~~~~~~~~~~h~~~--V~~l~~sp~g~~L~sgs~------------------------------- 224 (1208)
....+ .. ..+........+..+. -..++|+|+..++++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 00000 00 0000001111111111 123688888777776532
Q ss_pred --------------CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCC
Q 000961 225 --------------DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH 290 (1208)
Q Consensus 225 --------------dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~ 290 (1208)
+|.|..||+.+++. +-....+ .++..-.+...+.++++++.||.++.||..+|+.+..++...
T Consensus 440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp CSSHHHHHHHHTTCEEEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcccccCCCCCCCcceeEEEEECCCCCe--EeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 37799999999886 3333322 223334566678899999999999999999999999887654
Q ss_pred CCE-EEEEEeCCCCEEE
Q 000961 291 DRF-WILASHPEMNLLA 306 (1208)
Q Consensus 291 ~~i-~~la~sp~~~~la 306 (1208)
+.+ .-+.+..+|+..+
T Consensus 517 ~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 517 GVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp CCCSCCEEEEETTEEEE
T ss_pred CcccCceEEEECCEEEE
Confidence 322 3466677887544
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.93 E-value=3.7e-07 Score=104.78 Aligned_cols=252 Identities=10% Similarity=0.071 Sum_probs=164.8
Q ss_pred eEEEEECCC-----CeEEEEecc-cc-cCEEEEEE-----------E--cCCCEEEEE-ECCCeEEEEECCCC----eEE
Q 000961 32 VIQLWDYRM-----GTLIDRFDE-HD-GPVRGVHF-----------H--KSQPLFVSG-GDDYKIKVWNYKMH----RCL 86 (1208)
Q Consensus 32 ~I~iWd~~~-----g~~i~~l~~-h~-~~V~~l~f-----------s--p~~~~Lasg-s~Dg~I~vWd~~~~----~~~ 86 (1208)
.|.+-|+.. ++.++++.- +. .......| + +++++|++. ..++.|.|+|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 466777765 667766531 11 12233334 6 778876654 56789999999755 666
Q ss_pred EEEc-------cCCCCEEEEEEcCCCCEEEEEECC------CcEEEEECCCCeEEEEEecCC---CCEEEEEEeeCCCEE
Q 000961 87 FTLL-------GHLDYIRTVQFHHEYPWIVSASDD------QTIRIWNWQSRTCISVLTGHN---HYVMCASFHPKEDLV 150 (1208)
Q Consensus 87 ~~l~-------~h~~~I~~v~fs~d~~~l~s~s~D------g~I~iwd~~s~~~i~~l~~h~---~~V~~l~~~p~~~~l 150 (1208)
.++. .....-..+..+|++ .++++..+ |.|.+.|..+++.+..+.... ..-..+.|+|+++.+
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEE
Confidence 6662 112245678889999 77776665 789999999999999886321 223457889999988
Q ss_pred EEEE-------------------CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE
Q 000961 151 VSAS-------------------LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1208)
Q Consensus 151 ~s~s-------------------~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (1208)
++.. .+.+|.+||+.+.+.... ..+.........+.
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t-------------------------I~vg~~g~~P~~i~ 257 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS-------------------------LTLGEENRMALELR 257 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE-------------------------EESCTTEEEEEEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE-------------------------EecCCCCCccceeE
Confidence 8875 368999999987432211 01100111233344
Q ss_pred --EcCCCCEEEEEe------CCCcEEEEECCCCceeEEEe--ecCc----------------CCCeEEEEEccCCCEEEE
Q 000961 212 --FHPTLPLIVSGA------DDRQVKLWRMNETKAWEVDT--LRGH----------------MNNVSCVMFHAKQDIIVS 265 (1208)
Q Consensus 212 --~sp~g~~L~sgs------~dg~I~iwd~~~~~~~~~~~--l~~h----------------~~~V~~l~~sp~g~~l~s 265 (1208)
|+|+++++.+++ .+++|.+|....+....... +... ......+.+||||++|.+
T Consensus 258 f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV 337 (462)
T 2ece_A 258 PLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL 337 (462)
T ss_dssp ECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred eeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence 499999888777 46688887766543211111 1110 245788999999999887
Q ss_pred EeC-CCcEEEEeCCC---CeeEEEeecCCC--------------CEEEEEEeCCCCEEEEEE
Q 000961 266 NSE-DKSIRVWDVTK---RTGVQTFRREHD--------------RFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 266 gs~-dg~I~vwd~~~---~~~~~~~~~~~~--------------~i~~la~sp~~~~la~g~ 309 (1208)
+.. .+.|.+||+.. .+.+..+..... ....++++|||+++.++.
T Consensus 338 Snrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 338 SLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 765 67899999852 355555543311 357899999999988877
No 238
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.90 E-value=6.9e-08 Score=120.82 Aligned_cols=283 Identities=8% Similarity=0.005 Sum_probs=178.2
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEeccc-c----cCEEEEEEEcCCCEEEEEEC------CCeEEEEECCCCeEEEE
Q 000961 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEH-D----GPVRGVHFHKSQPLFVSGGD------DYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h-~----~~V~~l~fsp~~~~Lasgs~------Dg~I~vWd~~~~~~~~~ 88 (1208)
++..|++++.++.|..+|..+|+.+.++..+ . ..+.+--.-.+ ..+++++. ++.|+.||..+|+.+.+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3567888889999999999999999887654 2 11211111113 34555543 69999999999999887
Q ss_pred EccCCCC--------------------------------EEEEEEcCCCCEEEEEECCC-------------------cE
Q 000961 89 LLGHLDY--------------------------------IRTVQFHHEYPWIVSASDDQ-------------------TI 117 (1208)
Q Consensus 89 l~~h~~~--------------------------------I~~v~fs~d~~~l~s~s~Dg-------------------~I 117 (1208)
+...... ...+++.+++..++.++.++ +|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 7532211 13578889888888887664 59
Q ss_pred EEEECCCCeEEEEEec--CC-------CCEEEEEEeeCC---CEEEEEECCCeEEEEECCCCccccccCCCc-c--eeec
Q 000961 118 RIWNWQSRTCISVLTG--HN-------HYVMCASFHPKE---DLVVSASLDQTVRVWDIGALRKKTVSPADD-I--LRLS 182 (1208)
Q Consensus 118 ~iwd~~s~~~i~~l~~--h~-------~~V~~l~~~p~~---~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~-~--~~~~ 182 (1208)
..+|..+|+.+..++. |. .....+....+| ..++.++.+|.|.++|..+++.....+... . ..+.
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 9999999999988764 21 122333444567 689999999999999999887653322110 0 0000
Q ss_pred cccccccccc---cceEEEEEeccCCCe--EEEEEcCCCCEEEEEeC---------------------------------
Q 000961 183 QMNTDLFGGV---DAVVKYVLEGHDRGV--NWAAFHPTLPLIVSGAD--------------------------------- 224 (1208)
Q Consensus 183 ~~~~~~~~~~---~~~~~~~~~~h~~~V--~~l~~sp~g~~L~sgs~--------------------------------- 224 (1208)
.....++... .........+..+.. ..++++|++.++++...
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 0000000000 000000111111111 24788888888777543
Q ss_pred ----------CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCC-CE
Q 000961 225 ----------DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHD-RF 293 (1208)
Q Consensus 225 ----------dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~-~i 293 (1208)
.|.|..||+.+++. +-... +..++....+...+.++++++.||.+++||..+++.+..+..... .-
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKA--AWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEE--EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred cccccCCCCCccEEEEEeCCCCcE--EeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 27799999999885 22222 233444555667888899999999999999999999999875542 22
Q ss_pred EEEEEeCCCCEEE
Q 000961 294 WILASHPEMNLLA 306 (1208)
Q Consensus 294 ~~la~sp~~~~la 306 (1208)
.-+.+.++|+.++
T Consensus 523 ~p~~y~~~G~~~v 535 (677)
T 1kb0_A 523 APSTYMVDGRQYV 535 (677)
T ss_dssp CCEEEEETTEEEE
T ss_pred CCEEEEeCCEEEE
Confidence 3355567776443
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.90 E-value=2.4e-07 Score=106.32 Aligned_cols=241 Identities=10% Similarity=0.070 Sum_probs=155.5
Q ss_pred CCCCEEEEEe-cCCeEEEEECCCC----eEEEEec------c-cccCEEEEEEEcCCCEEEEEECC------CeEEEEEC
Q 000961 19 SKRPWILASL-HSGVIQLWDYRMG----TLIDRFD------E-HDGPVRGVHFHKSQPLFVSGGDD------YKIKVWNY 80 (1208)
Q Consensus 19 pdg~~Lasg~-~dg~I~iWd~~~g----~~i~~l~------~-h~~~V~~l~fsp~~~~Lasgs~D------g~I~vWd~ 80 (1208)
+++++|++.+ .++.|.|+|+.+. +..++++ . ....-..+..+|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 8888887765 5788999998766 6777773 1 11234667888999 77776555 78999999
Q ss_pred CCCeEEEEEccCCC---CEEEEEEcCCCCEEEEEE-------------------CCCcEEEEECCCCeEEEEEecC-C-C
Q 000961 81 KMHRCLFTLLGHLD---YIRTVQFHHEYPWIVSAS-------------------DDQTIRIWNWQSRTCISVLTGH-N-H 136 (1208)
Q Consensus 81 ~~~~~~~~l~~h~~---~I~~v~fs~d~~~l~s~s-------------------~Dg~I~iwd~~s~~~i~~l~~h-~-~ 136 (1208)
++++.+.++..... .-..+.|+|+++.++++. .+.+|.+||+.+++.+.++... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999998863222 234688999999888875 3689999999999988888743 1 2
Q ss_pred CEEEEEE--eeCCCEEEEEE------CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 137 YVMCASF--HPKEDLVVSAS------LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 137 ~V~~l~~--~p~~~~l~s~s------~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
....+.| +|+++++++++ .+++|.+|....+...... .+.+... ...+..... ...+.+-.....
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~----vIdi~~~--~v~~~lp~~-~~~f~~~~~~pa 324 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK----VIEIPAE--PLEGNLPEI-LKPFKAVPPLVT 324 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE----EEEECCE--ECCSSCCGG-GGGGTEECCCCC
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE----EEeCCCc--ccccccccc-ccccccCCCcee
Confidence 3445555 99999888777 5678888776542211000 0000000 000000000 000000023467
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCCCc-eeEEEeecCc--------------CCCeEEEEEccCCCEEEEEe
Q 000961 209 WAAFHPTLPLIVSGAD-DRQVKLWRMNETK-AWEVDTLRGH--------------MNNVSCVMFHAKQDIIVSNS 267 (1208)
Q Consensus 209 ~l~~sp~g~~L~sgs~-dg~I~iwd~~~~~-~~~~~~l~~h--------------~~~V~~l~~sp~g~~l~sgs 267 (1208)
.+.+||||++|.++.. .+.|.+||+.... ...+..+... .+....+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 7999999999888765 7899999986432 2113332211 01367899999999998886
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.89 E-value=1.8e-06 Score=94.80 Aligned_cols=251 Identities=9% Similarity=0.018 Sum_probs=159.8
Q ss_pred CCEEEEEecCCeEEEEECCCCeEE-----EEecccccCEEEEEEEcCCCEEEEE-ECCCeEEEEECCCCeEEEEEccCCC
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLI-----DRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYKMHRCLFTLLGHLD 94 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i-----~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd~~~~~~~~~l~~h~~ 94 (1208)
|++|+.+. .+.|+.+++...... ..+......+.+++|++++..|..+ ..++.|.+++...+.....+.....
T Consensus 1 ~~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CcEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45666665 357888987654321 1222233457899999976655544 4578999999876554333333345
Q ss_pred CEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC---CCeEEEEECCCCccc
Q 000961 95 YIRTVQFHHEYPWIVSAS-DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL---DQTVRVWDIGALRKK 170 (1208)
Q Consensus 95 ~I~~v~fs~d~~~l~s~s-~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~---Dg~V~vwdl~~~~~~ 170 (1208)
....+++.+++..|+.+. ..+.|.+++...................++++|++..|+.+.. .+.|..+++.+....
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 789999999876666554 4678999998754332223322356789999997766666654 367888887542211
Q ss_pred cccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCcCC
Q 000961 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMN 249 (1208)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~ 249 (1208)
. ...........++++|++..|..+. ..+.|.+++..+... .....+ ..
T Consensus 160 ~---------------------------~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~~~~~~-~~ 209 (267)
T 1npe_A 160 I---------------------------LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR--RKVLEG-LQ 209 (267)
T ss_dssp E---------------------------EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE--EEEEEC-CC
T ss_pred E---------------------------EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce--EEEecC-CC
Confidence 0 1112224567899999877665554 567899999976543 122222 23
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCC-CCEEEEEEeCCCC
Q 000961 250 NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH-DRFWILASHPEMN 303 (1208)
Q Consensus 250 ~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~-~~i~~la~sp~~~ 303 (1208)
....++.. .+.++++....+.|.++|..+++.+.++.... ...+.+++.|++.
T Consensus 210 ~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 210 YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 44566654 34444444456899999999999888876443 2467788888764
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.88 E-value=1.6e-08 Score=114.88 Aligned_cols=301 Identities=9% Similarity=-0.051 Sum_probs=180.3
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCC
Q 000961 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHL 93 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~ 93 (1208)
+..+..++. |.+++.++.|..|| .+++.+..+..+...+.++...+++.+ ..++.+ |..+|. +++.+..+..+.
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcE-EEecCc--EEEECC-CCcEEEEEECCC
Confidence 344545554 66677788899999 899888777666666777777777754 444444 888885 555443333222
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcccccc
Q 000961 94 DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVS 173 (1208)
Q Consensus 94 ~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~ 173 (1208)
.......+. +..+..++.++.|..+|.. ++.......+...+.++...+++. ++.++.++.|..+|.. ++...
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~-- 170 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW-- 170 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE--
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE--
Confidence 222233333 4568888889999999988 777777665555566666766665 6677888999999986 33211
Q ss_pred CCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEE
Q 000961 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSC 253 (1208)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~ 253 (1208)
........+.++...+++.+. +++ +.|..+| .+++. ..........+.+
T Consensus 171 -------------------------~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~--~~~~~~~~~~~~~ 219 (330)
T 3hxj_A 171 -------------------------RFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTE--KWNFYAGYWTVTR 219 (330)
T ss_dssp -------------------------EEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCE--EEEECCSSCCCSC
T ss_pred -------------------------EEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcE--EEEEccCCcceec
Confidence 122223445566777777644 444 7799999 55543 3344444566888
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEE
Q 000961 254 VMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLF 333 (1208)
Q Consensus 254 l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~ 333 (1208)
+...++|. |..++.++.|..+|. ++..+..+......+..+...+++.+.+..
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t------------------------- 272 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGS------------------------- 272 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEEC-------------------------
T ss_pred eEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEec-------------------------
Confidence 88888876 555667778888874 566555555433333334444444433322
Q ss_pred EEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 334 YAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 334 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
.++.+..+|. +++......+. + . .+.++...++|+..+ ++.+|.+.+.....
T Consensus 273 --~~ggl~~~d~-~g~~~~~~~~~--~--~---~~~~~~~d~~g~l~~---gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 273 --YDGHLYAINP-DGTEKWNFETG--S--W---IIATPVIDENGTIYF---GTRNGKFYALFNLE 324 (330)
T ss_dssp --TTCEEEEECT-TSCEEEEEECS--S--C---CCSCCEECTTCCEEE---ECTTSCEEEEEC--
T ss_pred --CCCCEEEECC-CCcEEEEEEcC--C--c---cccceEEcCCCEEEE---EcCCCeEEEEeccc
Confidence 2334555553 33333222221 1 2 566677778887433 23567887766553
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.88 E-value=4.3e-07 Score=105.32 Aligned_cols=229 Identities=8% Similarity=-0.034 Sum_probs=151.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCE---
Q 000961 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYI--- 96 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I--- 96 (1208)
++..+++++.++.|..+|..+|+.+.+.............. +..+++++.++.|..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 45678888889999999999999887665433222122222 4478888899999999999999887775432211
Q ss_pred --EEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC----------E-EEEEEeeCCCEEEEEECCCeEEEEE
Q 000961 97 --RTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHY----------V-MCASFHPKEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 97 --~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~----------V-~~l~~~p~~~~l~s~s~Dg~V~vwd 163 (1208)
...... +..++.++.++.|..+|..+++.+......... + ..... .+..++.++.++.+..+|
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEE
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEE
Confidence 112222 346888888999999999999988776532110 0 01111 256788888899999999
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~ 243 (1208)
..+++.... . .......+.. ++..+++++.++.|..+|..+++. ...
T Consensus 256 ~~tG~~~w~---------------------------~--~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~--~w~ 302 (376)
T 3q7m_A 256 LRSGQIMWK---------------------------R--ELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT--LWT 302 (376)
T ss_dssp TTTCCEEEE---------------------------E--CCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE--EEE
T ss_pred CCCCcEEee---------------------------c--cCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE--EEe
Confidence 987653321 0 1112233333 356788888899999999998875 323
Q ss_pred ec-CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC
Q 000961 244 LR-GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 244 l~-~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
.. .....+..... .+..|++++.+|.|.++|..+++.+..+...
T Consensus 303 ~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~ 347 (376)
T 3q7m_A 303 QSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD 347 (376)
T ss_dssp ECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred ecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence 32 11222223333 2567888999999999999999988776653
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.88 E-value=3.2e-08 Score=113.48 Aligned_cols=237 Identities=8% Similarity=-0.005 Sum_probs=155.0
Q ss_pred cCCCCEEEEEEeCCCCEEEEEec-----CCeEEEEECCCCeEEEEecc------cccCEEEEEEEcCCCE-EEEEE---C
Q 000961 7 TKSNRVKGLSFHSKRPWILASLH-----SGVIQLWDYRMGTLIDRFDE------HDGPVRGVHFHKSQPL-FVSGG---D 71 (1208)
Q Consensus 7 ~h~~~V~~lafspdg~~Lasg~~-----dg~I~iWd~~~g~~i~~l~~------h~~~V~~l~fsp~~~~-Lasgs---~ 71 (1208)
+|-..+.+++++++|++.++-.. ++.|.+||..+++.+..+.. +...+..+++++++.. +++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 45678999999999876555433 57899999999998776643 2245689999986544 45544 5
Q ss_pred CCeEEEEECCCCeEEEEEccCCCCEE-EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEE
Q 000961 72 DYKIKVWNYKMHRCLFTLLGHLDYIR-TVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLV 150 (1208)
Q Consensus 72 Dg~I~vWd~~~~~~~~~l~~h~~~I~-~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l 150 (1208)
++.|.+||+.+++....+.+|..... ...+..++..+.+.+.++.++.|. ..+..++|+|+++.|
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence 78999999998887777765532111 134455676677777788776653 236789999999989
Q ss_pred EEEECCC-eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 000961 151 VSASLDQ-TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 229 (1208)
Q Consensus 151 ~s~s~Dg-~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~ 229 (1208)
+++..++ .+..++......... ....++. .....++......++++++|.++++...++.|.
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~------~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~ 272 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQL-----------TDAELGS------KIERYSEKPICDGISIDKDHNIYVGDLAHSAIG 272 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTC-----------CHHHHHT------TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEE
T ss_pred EEEeCCCCeEEEEEHHHhcCCCC-----------Chhhhhc------ceEecccCCCCceEEECCCCCEEEEccCCCeEE
Confidence 9888766 444444211000000 0000000 001123334556789999999999988899999
Q ss_pred EEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000961 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vw 275 (1208)
+||..+++...+.. ..+...+++++|.+++.++++.+..+.+.+|
T Consensus 273 ~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 273 VITSADRAYKLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EEETTTTEEEEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred EEECCCCCEEEEEE-CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 99985555322222 1235568999999999888887765544444
No 244
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.87 E-value=0.00037 Score=85.67 Aligned_cols=433 Identities=8% Similarity=0.018 Sum_probs=228.5
Q ss_pred CCEEEEEEeCCCCEEEEEe-cCCeEEEEECCCCeE-EEEecccccCEEEEEEEcCCCEEE-EEECCCeEEEEECCCCeEE
Q 000961 10 NRVKGLSFHSKRPWILASL-HSGVIQLWDYRMGTL-IDRFDEHDGPVRGVHFHKSQPLFV-SGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~-~dg~I~iWd~~~g~~-i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg~I~vWd~~~~~~~ 86 (1208)
..+.+++|++.+..|..+. .++.|..+++..... ...+...-....++++.+.+..|. +-...+.|.+.+.......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 4578999999777776654 467899898765432 223333335678999999665554 4456789999998754333
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEE
Q 000961 87 FTLLGHLDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWD 163 (1208)
Q Consensus 87 ~~l~~h~~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwd 163 (1208)
..+.........+++.|.+.+|+.+.. .+.|...++............-.....+++++++..|+.+. ..+.|...|
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 333345556788999998777776654 35677677664433333333445688999999877666665 456788888
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE---
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE--- 240 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~--- 240 (1208)
+.+......... ...|. ..+++..+ .++++-...+.|...|..+++...
T Consensus 200 ~dG~~~~~~~~~------------------------~~~~P---~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 200 LDGTNRQAVVKG------------------------SLPHP---FALTLFED-ILYWTDWSTHSILACNKYTGEGLREIH 251 (619)
T ss_dssp SSCCEEC---------------------------------C---CCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred CCCCccEEEEeC------------------------CCCCc---eEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEe
Confidence 876433221110 00111 12333333 222222234445555544332100
Q ss_pred --------EEeec-------------------------CcCCCeEEEE-----EccCC--------CEEEEEeCCCcEEE
Q 000961 241 --------VDTLR-------------------------GHMNNVSCVM-----FHAKQ--------DIIVSNSEDKSIRV 274 (1208)
Q Consensus 241 --------~~~l~-------------------------~h~~~V~~l~-----~sp~g--------~~l~sgs~dg~I~v 274 (1208)
+.... ......+|.+ +.+++ .+|+.+. .+.|+.
T Consensus 252 ~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~i~~ 330 (619)
T 3s94_A 252 SDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTDLRR 330 (619)
T ss_dssp SCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSCEEE
T ss_pred cCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-ccceEE
Confidence 00000 0000111111 01111 1333333 345777
Q ss_pred EeCCCCeeEE-Eee-cCCCCEEEEEEeCCCCEEEEEECCC--eeeEeeCCC-----------cc---eEEecCCEEEEE-
Q 000961 275 WDVTKRTGVQ-TFR-REHDRFWILASHPEMNLLAAGHDSG--MIVFKLERE-----------RP---AFAVSGDSLFYA- 335 (1208)
Q Consensus 275 wd~~~~~~~~-~~~-~~~~~i~~la~sp~~~~la~g~~~g--i~v~~l~~~-----------~~---~~s~~~~~L~~~- 335 (1208)
.++....... .+. ..-..+..+++.+.+..|....... +..+++... .| ++...++.|+.+
T Consensus 331 i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD 410 (619)
T 3s94_A 331 ISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410 (619)
T ss_dssp EESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred EecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe
Confidence 7776543211 111 1224577899998666555544322 333333221 11 333346778877
Q ss_pred -eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCc
Q 000961 336 -KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGL 414 (1208)
Q Consensus 336 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~ 414 (1208)
..+.|.+.++.+.....+. .. + ...+..+++.|....+.++.......|....+++..... ........
T Consensus 411 ~~~~~I~v~~~~G~~~~~l~--~~-~----l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~---l~~~~l~~ 480 (619)
T 3s94_A 411 TGTDRIEVTRLNGTMRKILI--SE-D----LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV---LVNTSLGW 480 (619)
T ss_dssp TTTTEEEEEETTSCSCEEEE--CT-T----CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EECSSCSC
T ss_pred CCCCcEEEEeCCCCeEEEEE--EC-C----CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE---EEeCCCCC
Confidence 5688888888765432222 11 1 227899999998666665543334566666655432211 11223446
Q ss_pred eEEEEEEeC-CcEEEEEcCCCEEEEEecCCceeeeecCCc--ceEEEEEeCCccEEEEe--CCeEEEEEcCCC
Q 000961 415 GGSAIFIAR-NRFAVLDKSSNQVLVKNLKNEVVKKSILPI--AADAIFYAGTGNLLCRA--EDRVVIFDLQQR 482 (1208)
Q Consensus 415 i~~~~fs~d-~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~--~v~~i~~s~dg~~Las~--dg~v~lwdl~~~ 482 (1208)
...+++.++ +++.++....+.|...++++...+++.... ...+|++..+ .+.++. .+.|...|..+|
T Consensus 481 P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 481 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred CeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 678999975 566677777788999999865444432111 2334444433 222331 344555555444
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=7.4e-10 Score=128.44 Aligned_cols=183 Identities=13% Similarity=0.080 Sum_probs=106.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCC-EE-
Q 000961 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDY-IR- 97 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~-I~- 97 (1208)
++..+++++.||.|+.||..+|+.+.++.. +++.+..+..++..+++++.||.|+.||.++++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988865 56666666778888888889999999999999887766533210 10
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCc
Q 000961 98 TVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177 (1208)
Q Consensus 98 ~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~ 177 (1208)
+..+. ++..+++++.|+.|+.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||..+++.....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~---- 156 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA---- 156 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEE----
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE----
Confidence 00111 34467888889999999999999988876553 2345678889999999999999999876543210
Q ss_pred ceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCce
Q 000961 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL---PLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g---~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
..... ...+++++. ..+++++.+|.|..||..+++.
T Consensus 157 ---------------------~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 157 ---------------------TYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp ---------------------EEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred ---------------------ecccc----cCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 01111 112233322 4577788999999999998875
No 246
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.85 E-value=4.9e-05 Score=85.46 Aligned_cols=385 Identities=14% Similarity=0.159 Sum_probs=212.3
Q ss_pred CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCE
Q 000961 225 DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNL 304 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~ 304 (1208)
+..|.|.|+.++........ .--+...||..+.|+.-. ..++.|+|+.+...+..+....
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi-----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-------------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-------------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC-----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS--------------
T ss_pred CCeEEEEECCCCCcceeccc-----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC--------------
Confidence 34788899888665211111 223567899888887776 6789999999988887765432
Q ss_pred EEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEE
Q 000961 305 LAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICS 384 (1208)
Q Consensus 305 la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~ 384 (1208)
.++.|+. ++.+.|..+.+..|..|++.. ...+..-+.+++.-. ...|.....+++++++++++
T Consensus 107 -------~VvfWkW--------is~~~l~lVT~taVyHWsi~~-~s~P~kvFdR~~~L~-~~QIInY~~d~~~kW~~l~G 169 (494)
T 1bpo_A 107 -------DVTFWKW--------ISLNTVALVTDNAVYHWSMEG-ESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTG 169 (494)
T ss_dssp -------CCCEEEE--------EETTEEEEECSSEEEEEESSS-SCCCEEEEECCGGGT-TCEEEEEEECTTSSEEEEEE
T ss_pred -------CceEEEe--------cCCCeEEEEcCCeeEEecccC-CCCchhheecchhcc-cceEEEEEECCCCCeEEEEe
Confidence 2344444 234556666788888888865 333444444433211 23777778899999998876
Q ss_pred ec-----CCCEEEEEEccCCCCCCCcccccccCCceEEEEEEeCC-----cEEEEEcC---CCEEEEEecCCc-------
Q 000961 385 DV-----DGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARN-----RFAVLDKS---SNQVLVKNLKNE------- 444 (1208)
Q Consensus 385 ~~-----~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~-----~~l~~~~~---dg~I~Iwdl~~~------- 444 (1208)
-+ -.|.+.+|....... +.+++|.+.- ..+-.+| .+++.+.. .+.+.|-++...
T Consensus 170 I~~~~~~v~G~mQLYS~er~~s----Q~ieGhaa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 170 ISAQQNRVVGAMQLYSVDRKVS----QPIEGHAASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp EEEETTEEEEEEEEEESTTCCE----EEECCSEEEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred ecccCCcccceEEEeecccccc----chheeeeeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 43 237888999886543 2455664322 1222222 23333332 378888888521
Q ss_pred --eeeeec-CCc----ceEEEEEeCC-ccEE-EEeCCeEEEEEcCCCeEEEEEeCCCeeEEEECCCCCEEEEEeCCeEEE
Q 000961 445 --VVKKSI-LPI----AADAIFYAGT-GNLL-CRAEDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKHAIII 515 (1208)
Q Consensus 445 --~~~~l~-~~~----~v~~i~~s~d-g~~L-as~dg~v~lwdl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~~i~i 515 (1208)
....+. .+. -..+|..|+. |-+. ++.-|.+++||++++.++..-+. |+|.-++.+..
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI--------s~~~iF~t~~~------ 309 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--------SGETIFVTAPH------ 309 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--------CSSCEEEEEEE------
T ss_pred cceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc--------cCCceEEeccc------
Confidence 011111 111 3346666665 3333 44578888999888877655432 21111110000
Q ss_pred EecCccceeeeecceeeeeeEEecCCeEEEecCCeeeeEecCCceeEEEeccccEEEEEEeCCEEEEEecCCceEEEEcC
Q 000961 516 ASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLDRDGKNRAIVID 595 (1208)
Q Consensus 516 ~~~~~~~~~~~~e~~~iks~~wd~~~~~iy~t~~~i~y~l~~g~~g~i~~l~~~~~l~~~~~~~l~~l~r~~~~~~~~ld 595 (1208)
+ ..+-+++++|+|.+..+.+|
T Consensus 310 -----------------------------------------~------------------~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 310 -----------------------------------------E------------------ATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp -----------------------------------------T------------------TTTEEEEEETTCEEEEEEEC
T ss_pred -----------------------------------------C------------------CCCcEEEEccCceEEEEEEc
Confidence 0 12345677888888888886
Q ss_pred hhhHHHHHhhcccccccchHHHHHHH-hCCChhhhhccccCc---------chhhHHHHhcCCHHHHHHHHHHhCC----
Q 000961 596 ATEYDHVMSMIRNSQLCGQAMIAYLQ-QKGFPEVALHFVKDE---------RTRFNLALESGNIQIAVASAKEIDE---- 661 (1208)
Q Consensus 596 ~~e~~~~l~~i~~~~~~~~~i~~yl~-~~g~~e~Al~~~~~~---------~~~f~lal~~g~~~~A~~~a~~~~~---- 661 (1208)
.. .|+.|+. +...++.|+.+.... ..+|+..+..|+|++|.+.|...+.
T Consensus 331 e~-----------------~ivpyi~~~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLR 393 (494)
T 1bpo_A 331 EE-----------------NIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILR 393 (494)
T ss_dssp TT-----------------THHHHHHHTTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSC
T ss_pred cc-----------------cchhhhhhccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcccccc
Confidence 53 2344432 223444444443211 2369999999999999999876543
Q ss_pred -hhHHHHH----------------HHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhH
Q 000961 662 -KDHWYRL----------------GVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQF 724 (1208)
Q Consensus 662 -~~~w~~L----------------a~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~ 724 (1208)
++..+++ =...+..|.+...|- -.+.++-+..|..+-+++-.+ +.+=.+++..
T Consensus 394 t~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ES--------lEl~r~vL~q~r~~llekWl~--e~KL~~SEeL 463 (494)
T 1bpo_A 394 TPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYES--------LELCRPVLQQGRKQLLEKWLK--EDKLECSEEL 463 (494)
T ss_dssp SHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHTTCHHHHHHHHH--HTCSCCCHHH
T ss_pred CHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHh--------hHHhHHHHhccHHHHHHHHHh--cCCccccHHh
Confidence 2222222 223333444333221 112233344555555555533 2222233333
Q ss_pred HHHHhcCCHHHHHHHHHHcCCChHHHHH
Q 000961 725 HNALYLGDVKERVKILESAGHLPLAYIT 752 (1208)
Q Consensus 725 ~~al~lgd~~~A~~i~~~~g~~~~A~~~ 752 (1208)
--.+...|..-|.++|.+++...+++..
T Consensus 464 GDlvk~~d~~LAl~IY~~a~~~~Kvi~c 491 (494)
T 1bpo_A 464 GDLVKSVDPTLALSVYLRANVPNKVIQC 491 (494)
T ss_dssp HHHHHHHCSHHHHHHHHHHCCCCC----
T ss_pred HhhhhhcCHHHHHHHHHHcCCcHHHHHH
Confidence 3334455777888888888888777643
No 247
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.84 E-value=1.3e-07 Score=112.24 Aligned_cols=255 Identities=11% Similarity=0.046 Sum_probs=172.6
Q ss_pred CCCCEEEEEeC-CCcEEEEECCCCceeEEEeecCcCCCeEEEEE-c-cCCCEEEEEeC------------------CCcE
Q 000961 214 PTLPLIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMF-H-AKQDIIVSNSE------------------DKSI 272 (1208)
Q Consensus 214 p~g~~L~sgs~-dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~-s-p~g~~l~sgs~------------------dg~I 272 (1208)
+||+++.+... ++.|.+.|+.+.+...+..+.. ...+..+++ + |++++++++++ ++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 47887777665 5679999999998744434432 345778887 5 99999998853 3579
Q ss_pred EEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCC----------------eeeEeeCCCcceEEecCCEEEEEe
Q 000961 273 RVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG----------------MIVFKLERERPAFAVSGDSLFYAK 336 (1208)
Q Consensus 273 ~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~g----------------i~v~~l~~~~~~~s~~~~~L~~~~ 336 (1208)
.+.|..+.+...++.... ....++++|+|+++.+.+.+. +.+++..+.. ....+|+....
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~-~~v~~Gk~~~i-- 253 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE-KAIAAGDYQEL-- 253 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-HHHHHTCSEEE--
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-EeccCCCeeEE--
Confidence 999999999988887544 456788999999999887554 3344332221 12334554443
Q ss_pred CCeEEEEEccC--Ccc-eeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC---C------CC
Q 000961 337 DRFLRYYEFST--QKD-TQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI---G------RG 404 (1208)
Q Consensus 337 d~~i~v~d~~~--~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~---~------~~ 404 (1208)
+.|.+.|..+ ++. +..++... .+.++.++|||++++++.. ...++.++++.+... + ..
T Consensus 254 -~~V~VID~~~~~~~~~~~~Ipvg~--------~PhGv~~sPDGk~v~V~~~-~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 254 -NGVKVVDGRKEASSLFTRYIPIAN--------NPHGCNMAPDKKHLCVAGK-LSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp -TTEEEEECSGGGCCSSEEEEEEES--------SCCCEEECTTSSEEEEECT-TSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred -CcEEEEeCcccCCceeEEEEecCC--------CceEEEEcCCCCEEEEeCC-CCCeEEEEECcccccccccccCcccce
Confidence 5599999998 444 44455443 6678999999999887665 556899999884310 0 00
Q ss_pred cccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC-----------ceeeeecCCcceEE------EEEeCCccEE
Q 000961 405 DSVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-----------EVVKKSILPIAADA------IFYAGTGNLL 467 (1208)
Q Consensus 405 ~~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~-----------~~~~~l~~~~~v~~------i~~s~dg~~L 467 (1208)
.... .-......++|+++|...++..-|++|.+||++. ..+.++..+...-. +.++|||++|
T Consensus 324 ~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 324 VAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp EECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 0011 1112467899999996666777899999999874 35566666554322 2447999999
Q ss_pred EEeC----CeE-----------EEEEcCCCeE
Q 000961 468 CRAE----DRV-----------VIFDLQQRLV 484 (1208)
Q Consensus 468 as~d----g~v-----------~lwdl~~~~~ 484 (1208)
++.+ ..+ .++|++.+++
T Consensus 403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred EEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 8742 333 8999976653
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.83 E-value=4.8e-08 Score=110.83 Aligned_cols=258 Identities=13% Similarity=-0.002 Sum_probs=166.6
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
..+.++...++|. |.+++.+ |..+|. +|+.+..+..+........+. +..+..++.++.|..+|.. ++.....
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 3456666766665 4445444 888885 676655554333333334444 5567778888999999988 7777777
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCcc
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRK 169 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~ 169 (1208)
..+...+.++...+++. +..++.++.|..+|.. ++.+.........+.++...+++. +..++ +.|..+| .+++.
T Consensus 133 ~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp ECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCE
T ss_pred cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcE
Confidence 66666667777777776 6667788999999998 887777766666677777777776 44444 7888888 44322
Q ss_pred ccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCC
Q 000961 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMN 249 (1208)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~ 249 (1208)
. .........+.++...++|. |.+++.++.+..++...... ........
T Consensus 207 ~---------------------------~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~~~---~~~~~~~~ 255 (330)
T 3hxj_A 207 K---------------------------WNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGTEK---WRFKTGKR 255 (330)
T ss_dssp E---------------------------EEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTSCEE---EEEECSSC
T ss_pred E---------------------------EEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCCCEe---EEeeCCCC
Confidence 1 12222334567778888875 56667778888887544443 23333333
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCee
Q 000961 250 NVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMI 314 (1208)
Q Consensus 250 ~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~ 314 (1208)
.+.++.+.+++. |..++.+|.|..+|. +++.+..+......+.++...+++++++ ++.+|.+
T Consensus 256 ~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~ 317 (330)
T 3hxj_A 256 IESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKF 317 (330)
T ss_dssp CCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCE
T ss_pred ccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeE
Confidence 344556665554 667788888999995 6777777665555666777777777655 4444433
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.81 E-value=1.4e-07 Score=112.04 Aligned_cols=297 Identities=10% Similarity=0.036 Sum_probs=190.4
Q ss_pred EEEEecCCeEEEEECCCCeEEEEecc---------------------------------c------ccCEEEEEEEc---
Q 000961 24 ILASLHSGVIQLWDYRMGTLIDRFDE---------------------------------H------DGPVRGVHFHK--- 61 (1208)
Q Consensus 24 Lasg~~dg~I~iWd~~~g~~i~~l~~---------------------------------h------~~~V~~l~fsp--- 61 (1208)
+.+|+++|.|+|+-+.+++.+.++.- + .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56788999999999888877765410 0 11223345554
Q ss_pred --CCCEEEEEE-CCCeEEEEECCCCeEEEEEcc-CCCCEEEEEE-c-CCCCEEEEEE------------------CCCcE
Q 000961 62 --SQPLFVSGG-DDYKIKVWNYKMHRCLFTLLG-HLDYIRTVQF-H-HEYPWIVSAS------------------DDQTI 117 (1208)
Q Consensus 62 --~~~~Lasgs-~Dg~I~vWd~~~~~~~~~l~~-h~~~I~~v~f-s-~d~~~l~s~s------------------~Dg~I 117 (1208)
||+++.+.. .++.|.+.|+.+.++...+.- ....+..+++ + |++.++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 788777665 467899999999998885542 2356888998 5 9999998885 24689
Q ss_pred EEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCC---------------eEEEEECCCCccccccCCCcceeec
Q 000961 118 RIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQ---------------TVRVWDIGALRKKTVSPADDILRLS 182 (1208)
Q Consensus 118 ~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg---------------~V~vwdl~~~~~~~~~~~~~~~~~~ 182 (1208)
.++|..+.+.+..+.-.. ....+.++|+|+++++.+.+. .|.+.|.....
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~-------------- 242 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE-------------- 242 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH--------------
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee--------------
Confidence 999999999988876322 346678999999999988653 13333321100
Q ss_pred cccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEEeecCcCCCeEEEEEccCC
Q 000961 183 QMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKAWEVDTLRGHMNNVSCVMFHAKQ 260 (1208)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~--~~~~~~~~l~~h~~~V~~l~~sp~g 260 (1208)
.+.++|+.... +.|.+.|..+ ++.. +..+. -.....++.++|||
T Consensus 243 ----------------------------~~v~~Gk~~~i----~~V~VID~~~~~~~~~-~~~Ip-vg~~PhGv~~sPDG 288 (595)
T 1fwx_A 243 ----------------------------KAIAAGDYQEL----NGVKVVDGRKEASSLF-TRYIP-IANNPHGCNMAPDK 288 (595)
T ss_dssp ----------------------------HHHHHTCSEEE----TTEEEEECSGGGCCSS-EEEEE-EESSCCCEEECTTS
T ss_pred ----------------------------EeccCCCeeEE----CcEEEEeCcccCCcee-EEEEe-cCCCceEEEEcCCC
Confidence 12223333222 4599999987 3320 12222 12356789999999
Q ss_pred CEEEEEe-CCCcEEEEeCCCCe------------eEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEe
Q 000961 261 DIIVSNS-EDKSIRVWDVTKRT------------GVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAV 327 (1208)
Q Consensus 261 ~~l~sgs-~dg~I~vwd~~~~~------------~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~ 327 (1208)
+++++++ .+.+|.++|+.+.+ ..... ......+.++|+|+| .+.+...
T Consensus 289 k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~----------------- 349 (595)
T 1fwx_A 289 KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLF----------------- 349 (595)
T ss_dssp SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEET-----------------
T ss_pred CEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEe-----------------
Confidence 9887765 57789999998653 22222 234567888999988 4443332
Q ss_pred cCCEEEEEeCCeEEEEEccC----------CcceeeEeecCC-CCCCCCcCCeEEEEcCCCCEEEEEEecCCCEE-----
Q 000961 328 SGDSLFYAKDRFLRYYEFST----------QKDTQVIPIRRP-GSTSLNQSPRTLSYSPTENAVLICSDVDGGSY----- 391 (1208)
Q Consensus 328 ~~~~L~~~~d~~i~v~d~~~----------~~~~~~~~~~~~-~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v----- 391 (1208)
-+++|.+||+.+ .+.+..+..... +|.. ....+.++|||+++++........+
T Consensus 350 --------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~---~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp 418 (595)
T 1fwx_A 350 --------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK---TVMGETLDATNDWLVCLSKFSKDRFLNVGP 418 (595)
T ss_dssp --------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE---ETTTTSTTCCSSEEEEEESCCTTSSCCCCS
T ss_pred --------cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce---eccceEeCCCCCEEEEcCCCCccccccCCC
Confidence 477888888876 233333333221 2101 1223456899999988877553344
Q ss_pred ------EEEEccCC
Q 000961 392 ------ELYVIPKD 399 (1208)
Q Consensus 392 ------~l~~l~~~ 399 (1208)
.++++.+.
T Consensus 419 ~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 419 LKPENDQLIDISGD 432 (595)
T ss_dssp SCCEEEEEEECSSS
T ss_pred CCCCcceEEEcCCC
Confidence 78888543
No 250
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.79 E-value=1.4e-09 Score=126.15 Aligned_cols=203 Identities=11% Similarity=0.069 Sum_probs=118.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-EE-
Q 000961 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHY-VM- 139 (1208)
Q Consensus 62 ~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~-V~- 139 (1208)
++..+++++.||.|+.||..+|+.+.++.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567899999999999999999999988875 55555566677777888889999999999999887766533110 10
Q ss_pred EEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEE
Q 000961 140 CASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLI 219 (1208)
Q Consensus 140 ~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L 219 (1208)
+..+. .+..+++++.++.|+.||..+++.... +..+. ...++|++..+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~---------------------------~~~~~----~~~~~p~~~~v 133 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT---------------------------LSSAF----ADSLSPSTSLL 133 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC-----------------------------------------------------E
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE---------------------------ecCCC----cccccccCCEE
Confidence 00111 345788888899999999987664321 11111 12345678889
Q ss_pred EEEeCCCcEEEEECCCCce-eEEEeecCcCCCeEEEEEccCC---CEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEE
Q 000961 220 VSGADDRQVKLWRMNETKA-WEVDTLRGHMNNVSCVMFHAKQ---DIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWI 295 (1208)
Q Consensus 220 ~sgs~dg~I~iwd~~~~~~-~~~~~l~~h~~~V~~l~~sp~g---~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~ 295 (1208)
++++.++.|+.||..+++. |... ... .....++++. ..+++++.||.|+.||..+++.+..+......+..
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~-~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~ 208 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNAT-YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAF 208 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEE-EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEE
T ss_pred EEEecCCEEEEEECCCCCEEEeEe-ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEE
Confidence 9999999999999988875 2221 111 1222333332 55777889999999999999988877643322333
Q ss_pred EEEeCCCC
Q 000961 296 LASHPEMN 303 (1208)
Q Consensus 296 la~sp~~~ 303 (1208)
..+++++.
T Consensus 209 ~~~~~dg~ 216 (369)
T 2hz6_A 209 YVWQREGL 216 (369)
T ss_dssp EECTTSSC
T ss_pred EEecCCce
Confidence 34445554
No 251
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.79 E-value=0.0011 Score=81.48 Aligned_cols=432 Identities=9% Similarity=0.030 Sum_probs=234.0
Q ss_pred CCEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEE-EEEECCCeEEEEECCCCeEEE
Q 000961 10 NRVKGLSFHSKRPWILAS-LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg-~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~~~~~~~ 87 (1208)
..+.+|+|++.+..|..+ ..++.|..+++........+........++++.+.+..| ++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 357799999977666655 457899999976544333333333456789999766555 444556899999987543322
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEEC
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDI 164 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl 164 (1208)
.+.......+.+++.|...+|+.+.. .+.|...++.......... .-.....+++++++..|+.+. ..+.|...|+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 23345567899999997667776653 4678778876544333333 456788999999877777665 4578899998
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEee
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTL 244 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l 244 (1208)
.+.... .+.........+++.. +.++++-...+.|...|..+++. ...+
T Consensus 196 dG~~~~----------------------------v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~--~~~l 244 (628)
T 4a0p_A 196 LGLNRE----------------------------VIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN--RTII 244 (628)
T ss_dssp TSCSCE----------------------------EEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS--CEEE
T ss_pred CCCceE----------------------------EeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc--eEEE
Confidence 663221 1111222344566654 34444444577788888666553 2222
Q ss_pred cCcCCCeEEE-EEccCCCEEEE-EeC-C---CcEEEEeCCCCeeEEE----eecCCCCEEEEEEeCCCCEEEEEECCCee
Q 000961 245 RGHMNNVSCV-MFHAKQDIIVS-NSE-D---KSIRVWDVTKRTGVQT----FRREHDRFWILASHPEMNLLAAGHDSGMI 314 (1208)
Q Consensus 245 ~~h~~~V~~l-~~sp~g~~l~s-gs~-d---g~I~vwd~~~~~~~~~----~~~~~~~i~~la~sp~~~~la~g~~~gi~ 314 (1208)
......+..+ .+++..+.-.- +.. + ..+.+-... +..... +....+..+|. +...++..+....+.
T Consensus 245 ~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~-~~~~C~C~~g~~l~~d~~~C~---~~~~~Ll~s~~~~i~ 320 (628)
T 4a0p_A 245 QGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPV-GGFVCGCPAHYSLNADNRTCS---APTTFLLFSQKSAIN 320 (628)
T ss_dssp ECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETT-TEEEEECSTTCEECTTSSCEE---CCSSEEEEEETTEEE
T ss_pred ecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCC-CCeeEEcCCCcEecccCCcCc---cccceeeeeccceEE
Confidence 2222222222 22321110000 000 0 001111110 000000 00001111111 122344444433333
Q ss_pred eEeeCCC------------c--c--eEEecCCEEEEE--eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCC
Q 000961 315 VFKLERE------------R--P--AFAVSGDSLFYA--KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPT 376 (1208)
Q Consensus 315 v~~l~~~------------~--~--~~s~~~~~L~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 376 (1208)
-+.+... . . .+....+.|+.+ ..+.|+.++........++.-...+... ...+..+++...
T Consensus 321 ~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~-~~~p~glAvD~~ 399 (628)
T 4a0p_A 321 RMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNL-EIQPYDLSIDIY 399 (628)
T ss_dssp EECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---------CCCEEEEEEETT
T ss_pred EEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccc-cCCcceEEeecc
Confidence 2222211 0 0 222335677777 5677877777654432332210000000 126789999998
Q ss_pred CCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCceEEEEEEe-CCcEEEEEcCCC--EEEEEecCCceeeeecCCc
Q 000961 377 ENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLGGSAIFIA-RNRFAVLDKSSN--QVLVKNLKNEVVKKSILPI 453 (1208)
Q Consensus 377 g~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~-d~~~l~~~~~dg--~I~Iwdl~~~~~~~l~~~~ 453 (1208)
++.|.++. +..+.|.+.++.+..... ...........+++.| +|.++.+..... .|...++++.....+....
T Consensus 400 ~~nLY~td-~~~~~I~v~~~~G~~~~~---l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~ 475 (628)
T 4a0p_A 400 SRYIYWTC-EATNVINVTRLDGRSVGV---VLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSG 475 (628)
T ss_dssp TTEEEEEE-TTTTEEEEEETTSCEEEE---EEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSS
T ss_pred CCeEEEEc-CCCCEEEEEECCCCeEEE---EEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEecc
Confidence 88776654 466789888887542211 1222345678899998 566666655343 6777788866554443322
Q ss_pred --ceEEEEEeCCccEE-EEe--CCeEEEEEcCCC
Q 000961 454 --AADAIFYAGTGNLL-CRA--EDRVVIFDLQQR 482 (1208)
Q Consensus 454 --~v~~i~~s~dg~~L-as~--dg~v~lwdl~~~ 482 (1208)
....|++.+++..| ++. .+.|..+++...
T Consensus 476 l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 476 LSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 67899999985555 442 478999998543
No 252
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.74 E-value=0.0024 Score=81.14 Aligned_cols=467 Identities=12% Similarity=0.082 Sum_probs=264.8
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~ 88 (1208)
...|.++.-..+| .|.+|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -+..+|..+++.. .
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~ 135 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-S 135 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-E
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-E
Confidence 3568998888776 566666665 789998876543321122345777754 344 45566665 5788898765543 2
Q ss_pred Ec-----cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEec-----CCCCEEEEEEeeCCCEEEEEECCCe
Q 000961 89 LL-----GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTG-----HNHYVMCASFHPKEDLVVSASLDQT 158 (1208)
Q Consensus 89 l~-----~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~-----h~~~V~~l~~~p~~~~l~s~s~Dg~ 158 (1208)
+. .....|.++....++...+ ++.+ -|..++..+++....... ....|.++...+++..|..|+. +-
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G 212 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY 212 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred eccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence 31 1235688888887776444 4544 477888877654322111 1234888888777776666764 45
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
+..+|..+.+.... ..+ ....|.++...++|.+. .|+.+ -+.+++..+.+.
T Consensus 213 l~~~~~~~~~~~~~-------------------------~~l--~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 213 LFQYFPSTGQIKQT-------------------------EAF--HNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPL 263 (758)
T ss_dssp EEEEETTTTEEEEE-------------------------EEE--EEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCC
T ss_pred CeEEcCCCCeEEec-------------------------cCC--CCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcE
Confidence 77888765332110 011 12347788888887654 45544 477888776553
Q ss_pred eEEEeec-----CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee-------cCCCCEEEEEEeCCCCEEE
Q 000961 239 WEVDTLR-----GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-------REHDRFWILASHPEMNLLA 306 (1208)
Q Consensus 239 ~~~~~l~-----~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~-------~~~~~i~~la~sp~~~~la 306 (1208)
....... -....|.++....+|. |-.|+..| +.++.... ....+. .....|.++....+|++.+
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi 339 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF 339 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEE
Confidence 1111110 1234688888887776 44555566 55544322 111211 1234688888888888776
Q ss_pred EEECCCeeeEeeCCC-------------------cceEE--e-cCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCC
Q 000961 307 AGHDSGMIVFKLERE-------------------RPAFA--V-SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSL 364 (1208)
Q Consensus 307 ~g~~~gi~v~~l~~~-------------------~~~~s--~-~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 364 (1208)
.. .+|+..++.... ..+.+ . ..+.|.++.++-+..|+..+++..........+...
T Consensus 340 Gt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~~~~- 417 (758)
T 3ott_A 340 GG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATDGSINRYDYATRQFIHYNIVDNTGTYN- 417 (758)
T ss_dssp EE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTEEEEEEEECCC--CB-
T ss_pred ee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeCCcHhhcCcCCCcEEEeecCCCcCCCC-
Confidence 54 567666643321 00111 1 234566665667888888776554332211111001
Q ss_pred CcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCC---CCCCCc-----ccccc-cCCceEEEEEEeCCcEEEEEcCCCE
Q 000961 365 NQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKD---SIGRGD-----SVQDA-KKGLGGSAIFIARNRFAVLDKSSNQ 435 (1208)
Q Consensus 365 ~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~---~~~~~~-----~~~~~-~~~~i~~~~fs~d~~~l~~~~~dg~ 435 (1208)
...|.++...++|+ +.+++. ++-+..++.... ...... ....+ ....|.++...++|++.+.++..+-
T Consensus 418 ~~~v~~i~~d~~g~-lWigT~--~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~G 494 (758)
T 3ott_A 418 TNWTYYIFEDTAGQ-LWISTC--LGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKG 494 (758)
T ss_dssp SSSEEEEEECTTSE-EEEEES--SSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSS
T ss_pred CceEEEEEEcCCCC-EEEEEC--CCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCC
Confidence 12567777777766 334332 233556654310 000000 00111 1234778888788887763332445
Q ss_pred EEEEecCCceeeeecCC-----cceEEEEEeCCccEEEEeCCeEEEEEcCCCeEEE----EEeCCCeeEEEECCCCCEEE
Q 000961 436 VLVKNLKNEVVKKSILP-----IAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLG----DLQTPFVKYVVWSNDMESVA 506 (1208)
Q Consensus 436 I~Iwdl~~~~~~~l~~~-----~~v~~i~~s~dg~~Las~dg~v~lwdl~~~~~l~----~~~~~~v~~v~ws~dg~~la 506 (1208)
|..+|........+... ..+.++....+|.+.+.+.+.+..||..+++... .+....|..+.-. +| .|.
T Consensus 495 l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g-~lW 572 (758)
T 3ott_A 495 IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQSISFGSFSNNEILSMTCV-KN-SIW 572 (758)
T ss_dssp EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CCCCBCCCCC---CCEEEEEEE-TT-EEE
T ss_pred cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCceEEecccCCCccceEEEEEC-CC-CEE
Confidence 88888876555554321 2678888889999988887889999987654321 1222456777653 44 577
Q ss_pred EEeCCeEEEEecCcccee
Q 000961 507 LLSKHAIIIASKKLVHQC 524 (1208)
Q Consensus 507 ~~s~~~i~i~~~~~~~~~ 524 (1208)
+++.++++.++.....+.
T Consensus 573 i~t~~Gl~~~~~~~~~~~ 590 (758)
T 3ott_A 573 VSTTNGLWIIDRKTMDAR 590 (758)
T ss_dssp EEESSCEEEEETTTCCEE
T ss_pred EECCCCeEEEcCCCceeE
Confidence 778889999988765543
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.70 E-value=3.2e-06 Score=105.60 Aligned_cols=189 Identities=11% Similarity=0.045 Sum_probs=122.8
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEecccccC----------E-EEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGP----------V-RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~----------V-~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l 89 (1208)
+..|++++.++.|.-+|..+|+.+-++...... + ..++. .+..+++++.|+.|..+|..+|+.+.++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 556778888999999999999998877532210 1 12233 3457888889999999999999998877
Q ss_pred ccCC----CCEEE-EEEcCCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCC---C-------------------
Q 000961 90 LGHL----DYIRT-VQFHHEYPWIVSASD------DQTIRIWNWQSRTCISVLTGHN---H------------------- 136 (1208)
Q Consensus 90 ~~h~----~~I~~-v~fs~d~~~l~s~s~------Dg~I~iwd~~s~~~i~~l~~h~---~------------------- 136 (1208)
.... ..+.+ ... .++ .+++++. +|.|..+|..+|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 011 133 4555543 5899999999999998875311 0
Q ss_pred ---------CEEEEEEeeCCCEEEEEECCCe-------------------EEEEECCCCccccccCCCcceeeccccccc
Q 000961 137 ---------YVMCASFHPKEDLVVSASLDQT-------------------VRVWDIGALRKKTVSPADDILRLSQMNTDL 188 (1208)
Q Consensus 137 ---------~V~~l~~~p~~~~l~s~s~Dg~-------------------V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1208)
....+++.|+.+.++.++.++. |..+|..+++..-..
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~--------------- 286 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY--------------- 286 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE---------------
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe---------------
Confidence 1124678888888888887764 777777776543211
Q ss_pred cccccceEEEEEeccC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCce
Q 000961 189 FGGVDAVVKYVLEGHD-------RGVNWAAFHPTLP---LIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 189 ~~~~~~~~~~~~~~h~-------~~V~~l~~sp~g~---~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
....|. .+.....+..+|+ .+++++.+|.++++|..+++.
T Consensus 287 ----------~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 287 ----------QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp ----------ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred ----------ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 111111 1222222233554 688889999999999999886
No 254
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.66 E-value=0.004 Score=81.69 Aligned_cols=303 Identities=10% Similarity=0.097 Sum_probs=163.1
Q ss_pred CCCeEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCceeEEEeecCcCCCeEEEEEcc--CCCEEEEEeCCCcEEE
Q 000961 204 DRGVNWAAFHPT------LPLIVSGAD-DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHA--KQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 204 ~~~V~~l~~sp~------g~~L~sgs~-dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp--~g~~l~sgs~dg~I~v 274 (1208)
...|.|+++.|. ++++++|.. |++|+|+++.+.+......+.. .....++.+.. ...+|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 567999999863 468999996 9999999998766543334432 22444554432 3457889999998755
Q ss_pred EeC--CCCeeEEE--eecCCCCEEEEEEeCCCC-EEEEEECCCeeeEe---------eCCCc--ceEEe----cCCEEEE
Q 000961 275 WDV--TKRTGVQT--FRREHDRFWILASHPEMN-LLAAGHDSGMIVFK---------LERER--PAFAV----SGDSLFY 334 (1208)
Q Consensus 275 wd~--~~~~~~~~--~~~~~~~i~~la~sp~~~-~la~g~~~gi~v~~---------l~~~~--~~~s~----~~~~L~~ 334 (1208)
+.+ .++..... ......++.-..+...+. .+.+.++...+++. +.... ..... ..+-+++
T Consensus 632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~ 711 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLAL 711 (1158)
T ss_dssp EEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEE
T ss_pred EEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEE
Confidence 543 44544322 111222333222332222 22222222222222 11111 11111 2456777
Q ss_pred EeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecC-----C---------------------
Q 000961 335 AKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVD-----G--------------------- 388 (1208)
Q Consensus 335 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~-----~--------------------- 388 (1208)
+.++.+++..+.+-.......++- ...++.++++|..+.+++..... +
T Consensus 712 ~~~~~LrI~~i~~~~~~~~~~ipL------~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 712 ANNSTLTIGTIDEIQKLHIRTVPL------YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp ECSSCEEEEEECCSSSEEEEEEEC------SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred EcCCceEEEEecccCCeeEEEEeC------CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 777789999987654444444432 22889999999888766654311 0
Q ss_pred ---------------------CEEEEEEccCCCCCCCccccc-ccCCceEEEEEE---eC-CcEEEEEc----------C
Q 000961 389 ---------------------GSYELYVIPKDSIGRGDSVQD-AKKGLGGSAIFI---AR-NRFAVLDK----------S 432 (1208)
Q Consensus 389 ---------------------g~v~l~~l~~~~~~~~~~~~~-~~~~~i~~~~fs---~d-~~~l~~~~----------~ 432 (1208)
+.+++++-... +.....+ .....+.+++.. .+ ..+++.|+ .
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~ 862 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPK 862 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCC
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCC
Confidence 12223322111 1111111 111234444432 22 36777765 2
Q ss_pred CCEEEEEecCCceeeee---cCCcceEEEEEeCCccEEEEeCCeEEEEEcCCCeEEE-EEeC-CCeeEEEECCCCCEEEE
Q 000961 433 SNQVLVKNLKNEVVKKS---ILPIAADAIFYAGTGNLLCRAEDRVVIFDLQQRLVLG-DLQT-PFVKYVVWSNDMESVAL 507 (1208)
Q Consensus 433 dg~I~Iwdl~~~~~~~l---~~~~~v~~i~~s~dg~~Las~dg~v~lwdl~~~~~l~-~~~~-~~v~~v~ws~dg~~la~ 507 (1208)
.|.|.++++.+..++.+ .....+.+++-- +|++|+..+..|++|++...+.+. .... ..+..+.....++++++
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~v 941 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILV 941 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEE
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEE
Confidence 47899999874433333 223378887743 468888889999999998765444 1111 22332233334677877
Q ss_pred EeCCe-EEEEe
Q 000961 508 LSKHA-IIIAS 517 (1208)
Q Consensus 508 ~s~~~-i~i~~ 517 (1208)
++-.. ++++.
T Consensus 942 gD~~~Sv~~~~ 952 (1158)
T 3ei3_A 942 GDLMRSVLLLA 952 (1158)
T ss_dssp EESSBCEEEEE
T ss_pred EEhhheEEEEE
Confidence 77644 55543
No 255
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.61 E-value=1.2e-05 Score=102.67 Aligned_cols=140 Identities=11% Similarity=0.179 Sum_probs=87.1
Q ss_pred CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCE
Q 000961 225 DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNL 304 (1208)
Q Consensus 225 dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~ 304 (1208)
..+|.|.|+.++.. +. ...-.--+...||..+.|+.-. ..++.|||+.+...+..+....
T Consensus 47 ~~~vvIidl~~~~~--~~---rrpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-------------- 106 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSN--PI---RRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-------------- 106 (1630)
T ss_pred CceEEEEECCCCCC--cc---cccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC--------------
Confidence 34788888888664 21 1111223567788888777765 6789999998877766554322
Q ss_pred EEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEE
Q 000961 305 LAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICS 384 (1208)
Q Consensus 305 la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~ 384 (1208)
.++.|++- +.+.|..+.+..|..|++.+ ...|..-+.+++.-. ...|..-..+++++++++++
T Consensus 107 -------~VvfWkWi--------s~~~l~lVT~~aVyHW~~~~-~s~P~k~fdR~~~L~-~~QIinY~~d~~~kW~~l~g 169 (1630)
T 1xi4_A 107 -------DVTFWKWI--------SLNTVALVTDNAVYHWSMEG-ESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTG 169 (1630)
T ss_pred -------CceEEEec--------CCCeeEEEcCCeEEEeccCC-CCccHHHHhcchhcc-cCeeEEeeeCCCCCeEEEEe
Confidence 23444442 23445555677888888864 223333333332211 23777788899999998876
Q ss_pred ec-----CCCEEEEEEccCCCC
Q 000961 385 DV-----DGGSYELYVIPKDSI 401 (1208)
Q Consensus 385 ~~-----~~g~v~l~~l~~~~~ 401 (1208)
-+ -.|.+.+|.......
T Consensus 170 i~~~~~~v~G~mQLyS~er~~s 191 (1630)
T 1xi4_A 170 ISAQQNRVVGAMQLYSVDRKVS 191 (1630)
T ss_pred eccCCCcccceeeeeecccccc
Confidence 43 348899999886544
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.55 E-value=5e-05 Score=83.07 Aligned_cols=221 Identities=11% Similarity=-0.012 Sum_probs=139.3
Q ss_pred CCEEEEEEeCCCCEEEEEe-cCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEE-EECCCeEEEEECCCCeEEE
Q 000961 10 NRVKGLSFHSKRPWILASL-HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVS-GGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~-~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Las-gs~Dg~I~vWd~~~~~~~~ 87 (1208)
..+.+++|++++..|..+. .++.|..++...+.....+...-....++++++++..|.. -...+.|.+++........
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3567999999776666554 4689999998765443333333346789999997655554 4556899999987433222
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEE
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASD---DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWD 163 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~---Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwd 163 (1208)
...........++++|++..|+.+.. .+.|..+++..................++++|++..|+.+. ..+.|.++|
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 22223356789999997777766654 36888888764332222223335678999999877666655 457899999
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~ 243 (1208)
..+.... ....+ ......++.. .+.++++....+.|..+|..+++. +..
T Consensus 196 ~~g~~~~---------------------------~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~--~~~ 244 (267)
T 1npe_A 196 PAQPGRR---------------------------KVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE--MDT 244 (267)
T ss_dssp TTEEEEE---------------------------EEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE--EEE
T ss_pred cCCCceE---------------------------EEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCc--eEE
Confidence 8652211 01111 1223455554 344444444568999999998875 444
Q ss_pred ecCcC-CCeEEEEEccCCC
Q 000961 244 LRGHM-NNVSCVMFHAKQD 261 (1208)
Q Consensus 244 l~~h~-~~V~~l~~sp~g~ 261 (1208)
+.... .....+++.|++-
T Consensus 245 i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 245 FHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ECCSSCCCCCCEEEECSCC
T ss_pred EccccccccceeeecCccC
Confidence 44322 2467778877753
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.54 E-value=4.7e-05 Score=93.01 Aligned_cols=323 Identities=10% Similarity=0.040 Sum_probs=192.3
Q ss_pred CCEEEEEec-CCeEEEEEC-CCCeEEEEeccccc-----------CEEEEEEEcCCCE----EEEEECCCeEEEEECCCC
Q 000961 21 RPWILASLH-SGVIQLWDY-RMGTLIDRFDEHDG-----------PVRGVHFHKSQPL----FVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 21 g~~Lasg~~-dg~I~iWd~-~~g~~i~~l~~h~~-----------~V~~l~fsp~~~~----Lasgs~Dg~I~vWd~~~~ 83 (1208)
+..|.+++. ++.|.-+|. .+|+.+-++..... ..+.++++|.+.. +++++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 889999999 89999877753221 1234566554444 888889999999999999
Q ss_pred eEEEEEccCC----CCEEE-EEEcCCCCEEEEEE------CCCcEEEEECCCCeEEEEEecCCCC---------------
Q 000961 84 RCLFTLLGHL----DYIRT-VQFHHEYPWIVSAS------DDQTIRIWNWQSRTCISVLTGHNHY--------------- 137 (1208)
Q Consensus 84 ~~~~~l~~h~----~~I~~-v~fs~d~~~l~s~s------~Dg~I~iwd~~s~~~i~~l~~h~~~--------------- 137 (1208)
+.+....... ..+.+ ... .++ .+++++ .+|.|+.+|..+|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 9887764322 01111 111 134 455554 3799999999999998877533211
Q ss_pred ----------------------E-EEEEEeeCCCEEEEEECCC----------------eEEEEECCCCccccccCCCcc
Q 000961 138 ----------------------V-MCASFHPKEDLVVSASLDQ----------------TVRVWDIGALRKKTVSPADDI 178 (1208)
Q Consensus 138 ----------------------V-~~l~~~p~~~~l~s~s~Dg----------------~V~vwdl~~~~~~~~~~~~~~ 178 (1208)
+ ..+++.++...++.++.++ .|..+|..+++..-.
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~------ 293 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG------ 293 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE------
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE------
Confidence 0 1345667778888877654 677777776554321
Q ss_pred eeeccccccccccccceEEEEEeccC--------CCeEEEEEc-CCC---CEEEEEeCCCcEEEEECCCCceeEEEeecC
Q 000961 179 LRLSQMNTDLFGGVDAVVKYVLEGHD--------RGVNWAAFH-PTL---PLIVSGADDRQVKLWRMNETKAWEVDTLRG 246 (1208)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~h~--------~~V~~l~~s-p~g---~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~ 246 (1208)
+....|+ .++. +... .+| +.++.++.+|.+.++|..+++......+..
T Consensus 294 -------------------~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~ 353 (599)
T 1w6s_A 294 -------------------YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDD 353 (599)
T ss_dssp -------------------EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred -------------------eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccC
Confidence 1111221 1121 2222 456 467778899999999999888632222111
Q ss_pred -----------cCCC--------------------------eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecC
Q 000961 247 -----------HMNN--------------------------VSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRRE 289 (1208)
Q Consensus 247 -----------h~~~--------------------------V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~ 289 (1208)
...+ -..++++|+..++++...+....++..... .. .
T Consensus 354 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~-----~~-~ 427 (599)
T 1w6s_A 354 TVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP-----YK-A 427 (599)
T ss_dssp TCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-----CC-T
T ss_pred CcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc-----cc-C
Confidence 0011 124678888888888766544433321110 00 0
Q ss_pred CCCE----EEEEEe---------CCCCEEEEEECCCeeeEeeCCCcc----eEEecCCEEEEE-eCCeEEEEEccCCcce
Q 000961 290 HDRF----WILASH---------PEMNLLAAGHDSGMIVFKLERERP----AFAVSGDSLFYA-KDRFLRYYEFSTQKDT 351 (1208)
Q Consensus 290 ~~~i----~~la~s---------p~~~~la~g~~~gi~v~~l~~~~~----~~s~~~~~L~~~-~d~~i~v~d~~~~~~~ 351 (1208)
.... ..+..+ +.+.+.|.--..+-++|+.....+ .+...++.+|++ .++.++.+|..+|+.+
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 0000 001122 234455555566777887754332 355578888888 8999999999999987
Q ss_pred eeEeecCCCCCCCCcCCeEEEEcCCCCEEEEE
Q 000961 352 QVIPIRRPGSTSLNQSPRTLSYSPTENAVLIC 383 (1208)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~ 383 (1208)
-...+.... ...-+.|..+|+..++.
T Consensus 508 W~~~l~~g~------~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 508 WKFKIPSGA------IGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp EEEECSSCC------CSCCEEEEETTEEEEEE
T ss_pred EEeeCCCCc------EeccEEEEeCCEEEEEE
Confidence 766554322 22336667788754443
No 258
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.53 E-value=1.9e-05 Score=85.39 Aligned_cols=205 Identities=5% Similarity=-0.095 Sum_probs=133.7
Q ss_pred CEEEEEEeCCCCEEEEEec--CCeEEEEECCCCeEEEEeccccc-CEEEEEEEcCCCEE-EEEECCCeEEEEECCCCeEE
Q 000961 11 RVKGLSFHSKRPWILASLH--SGVIQLWDYRMGTLIDRFDEHDG-PVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~--dg~I~iWd~~~g~~i~~l~~h~~-~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~~~~~~ 86 (1208)
...+++|+|++...++.+. ++.|.++|..+++.+.++.-... -...++++ +..| ++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4689999998744444433 57999999999999988752221 22345555 4444 44456799999999999999
Q ss_pred EEEccC-CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 87 FTLLGH-LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN-----HYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 87 ~~l~~h-~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~-----~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
.++... .. ...+++|+.+++++..++.|.++|..+.+.+..+.-.. ..+..+.|. ++...+....++.|.
T Consensus 100 ~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 100 KNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence 988533 22 23356688878877788999999999998888775321 246778888 664444444578999
Q ss_pred EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 000961 161 VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVS-GADDRQVKLWRMNE 235 (1208)
Q Consensus 161 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~s-gs~dg~I~iwd~~~ 235 (1208)
+.|..+++.....+...... ..... ........+.++|+|+++.+++ +...+.|...++..
T Consensus 176 vID~~tg~V~~~I~~~g~~~-----~~~~~---------~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRK-----KLIDE---------GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTTCCEEEEEECHHHHH-----HHHHT---------TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEECCCCcEEEEEECCCccc-----ccccc---------cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 99998876543211000000 00000 0001235689999999875554 55677787777654
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.53 E-value=8.8e-05 Score=90.68 Aligned_cols=325 Identities=10% Similarity=0.049 Sum_probs=182.0
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEecccccC---------EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEcc
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGP---------VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLG 91 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~---------V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~ 91 (1208)
+..+++++.++.|.-+|..+|+.+-++...... -+.++. .+..+++++.|+.|..+|.++|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 345666666455999999999998777533221 022222 355788888999999999999999877653
Q ss_pred CCC----CEE-EEEEcC---CCC-EEEEEE------CCCcEEEEECCCCeEEEEEecCCCCE------------------
Q 000961 92 HLD----YIR-TVQFHH---EYP-WIVSAS------DDQTIRIWNWQSRTCISVLTGHNHYV------------------ 138 (1208)
Q Consensus 92 h~~----~I~-~v~fs~---d~~-~l~s~s------~Dg~I~iwd~~s~~~i~~l~~h~~~V------------------ 138 (1208)
... .+. ...... +++ .+++++ .++.|+.+|..+|+.+.........+
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 320 111 111111 233 565554 37899999999999887664321100
Q ss_pred -----------------------EEEEEeeCCCEEEEEECC------------------------CeEEEEECCCCcccc
Q 000961 139 -----------------------MCASFHPKEDLVVSASLD------------------------QTVRVWDIGALRKKT 171 (1208)
Q Consensus 139 -----------------------~~l~~~p~~~~l~s~s~D------------------------g~V~vwdl~~~~~~~ 171 (1208)
..+++.|+..+++.++.+ +.|.-+|..+++..-
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 124566666777777642 466777766655432
Q ss_pred ccCCCcceeeccccccccccccceEEEEEeccC--------CCeEEEEEc-CCCC---EEEEEeCCCcEEEEECCCCcee
Q 000961 172 VSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD--------RGVNWAAFH-PTLP---LIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--------~~V~~l~~s-p~g~---~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
. +....|+ .++. +... .+|+ .++.++.+|.++++|..+++..
T Consensus 306 ~-------------------------~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 306 F-------------------------YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp E-------------------------EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred E-------------------------EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 1 1111121 1221 1222 4563 6788899999999999988863
Q ss_pred EEEeecCcC-----------CC--------------------------------eEEEEEccCCCEEEEEeCCCcEEEEe
Q 000961 240 EVDTLRGHM-----------NN--------------------------------VSCVMFHAKQDIIVSNSEDKSIRVWD 276 (1208)
Q Consensus 240 ~~~~l~~h~-----------~~--------------------------------V~~l~~sp~g~~l~sgs~dg~I~vwd 276 (1208)
....+.... .+ -..++++|+..++++...+-...++.
T Consensus 360 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 360 NAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp EEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred cccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 222221100 00 01346666666666655443333333
Q ss_pred CCCCeeEEEeecCCCCE--EEEEE-----eCCCCEEEEEECCCeeeEeeCCCcc----eEEecCCEEEEE-eCCeEEEEE
Q 000961 277 VTKRTGVQTFRREHDRF--WILAS-----HPEMNLLAAGHDSGMIVFKLERERP----AFAVSGDSLFYA-KDRFLRYYE 344 (1208)
Q Consensus 277 ~~~~~~~~~~~~~~~~i--~~la~-----sp~~~~la~g~~~gi~v~~l~~~~~----~~s~~~~~L~~~-~d~~i~v~d 344 (1208)
.... +. ..... ..+.. .+.+.+.|.--..+-++|+.....+ .....++.++++ .++.++.||
T Consensus 440 ~~~~-----~~-~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 440 EEVS-----YT-KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp CCCC-----CC-TTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred cccc-----cc-CCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 2110 00 00000 00111 1234444444455666776654332 344567788888 899999999
Q ss_pred ccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 345 FSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
..+|+.+-...+.... ...-+.|..+|+..++...
T Consensus 514 ~~tG~~lW~~~~~~g~------~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 514 AKSGKELWKFQTGSGI------VSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp TTTCCEEEEEECSSCC------CSCCEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEecCCCCc------ccCceEEEECCEEEEEEEc
Confidence 9999987766654311 2233667788875555443
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=3.5e-05 Score=87.01 Aligned_cols=235 Identities=10% Similarity=0.069 Sum_probs=148.8
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEec--------------------ccccCEEEEEEEc-CCCEEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFD--------------------EHDGPVRGVHFHK-SQPLFVS 68 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~--------------------~h~~~V~~l~fsp-~~~~Las 68 (1208)
....+++|+++|.++.++..++.|..||..+++... +. .....+.++++++ ++. |.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 456789999999978888889999999987654332 21 0123578999998 554 555
Q ss_pred EECCCeEEEEECCCCeEEEEEcc-----CCCCEEEEEEcC-CCCEEEEEEC-----------------CCcEEEEECCCC
Q 000961 69 GGDDYKIKVWNYKMHRCLFTLLG-----HLDYIRTVQFHH-EYPWIVSASD-----------------DQTIRIWNWQSR 125 (1208)
Q Consensus 69 gs~Dg~I~vWd~~~~~~~~~l~~-----h~~~I~~v~fs~-d~~~l~s~s~-----------------Dg~I~iwd~~s~ 125 (1208)
+...+.|..+|..++.. ..+.. .......+++.+ +|...++-.. ++.|..||..++
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 55555688888775532 22211 123578899999 8876555432 367889998777
Q ss_pred eEEEEEecCCCCEEEEEEeeCCCEEEEE-ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccC
Q 000961 126 TCISVLTGHNHYVMCASFHPKEDLVVSA-SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (1208)
Q Consensus 126 ~~i~~l~~h~~~V~~l~~~p~~~~l~s~-s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 204 (1208)
+....... ......++|+|+++.|+.+ +..+.|.+|++.+..... ...... ..
T Consensus 176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~------------------------~~~~~~-~~ 229 (322)
T 2fp8_A 176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT------------------------AEVLVK-IP 229 (322)
T ss_dssp EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC------------------------EEEEEE-CS
T ss_pred EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc------------------------cceEEe-CC
Confidence 65433322 2334578999999876666 456899999987522100 000011 12
Q ss_pred CCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEEeecCc----CCCeEEEEEccCCCEEEEEeCCC
Q 000961 205 RGVNWAAFHPTLPLIVSGAD----------DRQVKLWRMNETKAWEVDTLRGH----MNNVSCVMFHAKQDIIVSNSEDK 270 (1208)
Q Consensus 205 ~~V~~l~~sp~g~~L~sgs~----------dg~I~iwd~~~~~~~~~~~l~~h----~~~V~~l~~sp~g~~l~sgs~dg 270 (1208)
+ ...+++.++|.+.++... .+.|..+|.. ++. +..+... ...++++++ .+++++++...++
T Consensus 230 g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~--~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 230 N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI--LEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG 304 (322)
T ss_dssp S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE--EEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCE--EEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence 2 677899999987666554 4668888875 443 3333222 245667766 4666666666677
Q ss_pred cEEEEeCC
Q 000961 271 SIRVWDVT 278 (1208)
Q Consensus 271 ~I~vwd~~ 278 (1208)
.|.++++.
T Consensus 305 ~i~~~~~~ 312 (322)
T 2fp8_A 305 SVGILVYD 312 (322)
T ss_dssp EEEEEEC-
T ss_pred ceEEEecc
Confidence 88888875
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.48 E-value=8.5e-05 Score=83.13 Aligned_cols=230 Identities=9% Similarity=-0.002 Sum_probs=143.0
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC--CeEEEEECCCCeEEE
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD--YKIKVWNYKMHRCLF 87 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D--g~I~vWd~~~~~~~~ 87 (1208)
....+++|+++|.++++-..++.|..||... +....+. ......+++++++++++++.... ..|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 5678999999999766666789999999754 4433332 23468899999999976665443 257777877776543
Q ss_pred EEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEEe---------cCCCCEEEEEEeeCCCEEEEEE-C
Q 000961 88 TLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTC-ISVLT---------GHNHYVMCASFHPKEDLVVSAS-L 155 (1208)
Q Consensus 88 ~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~-i~~l~---------~h~~~V~~l~~~p~~~~l~s~s-~ 155 (1208)
... ........++..+++..+++-..++.|.++|..+++. +.... ..-.....+ +|+++.|+.+. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 222 1222344555555554444444588999999876532 22111 111234555 88887666555 5
Q ss_pred CCeEEEEECCCC-ccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000961 156 DQTVRVWDIGAL-RKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 234 (1208)
Q Consensus 156 Dg~V~vwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~ 234 (1208)
.+.|.++++... .... ... ... ......++++++|++.++....+.|.+++..
T Consensus 188 ~~~I~~~~~~~~g~~~~----------------------~~~--~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGE----------------------PEI--FVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCC----------------------CEE--EEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCc----------------------cEE--Eec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 678999998641 1100 000 001 1234558999999887777778899999976
Q ss_pred CCceeEEEeecCcCCCeEEEEEc---cCCCEEEEEeCCC
Q 000961 235 ETKAWEVDTLRGHMNNVSCVMFH---AKQDIIVSNSEDK 270 (1208)
Q Consensus 235 ~~~~~~~~~l~~h~~~V~~l~~s---p~g~~l~sgs~dg 270 (1208)
++...+..........++++|. |+++.|++++..+
T Consensus 242 -G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 242 -RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 4432222333334568999998 8887777666543
No 262
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.48 E-value=1.8e-05 Score=98.81 Aligned_cols=284 Identities=8% Similarity=0.041 Sum_probs=168.7
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEecccc----cCEEE-EEEEcCCCEEEEEEC------CCeEEEEECCCCeEEEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHD----GPVRG-VHFHKSQPLFVSGGD------DYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~----~~V~~-l~fsp~~~~Lasgs~------Dg~I~vWd~~~~~~~~~l 89 (1208)
+..+++++.++.|..+|..+|+.+-++.... ..+.+ ... .++ .++++.. +|.|..+|..+|+.+.++
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 5578888889999999999999987765321 11111 011 133 4555432 589999999999998877
Q ss_pred ccCC---C----------------------------CEEEEEEcCCCCEEEEEECCC-------------------cEEE
Q 000961 90 LGHL---D----------------------------YIRTVQFHHEYPWIVSASDDQ-------------------TIRI 119 (1208)
Q Consensus 90 ~~h~---~----------------------------~I~~v~fs~d~~~l~s~s~Dg-------------------~I~i 119 (1208)
.... . ....+++.++...++.++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5211 0 112467888888888887766 3999
Q ss_pred EECCCCeEEEEEec--CC-------CCEEEEEEeeCCC---EEEEEECCCeEEEEECCCCccccccCCCc---ceeec-c
Q 000961 120 WNWQSRTCISVLTG--HN-------HYVMCASFHPKED---LVVSASLDQTVRVWDIGALRKKTVSPADD---ILRLS-Q 183 (1208)
Q Consensus 120 wd~~s~~~i~~l~~--h~-------~~V~~l~~~p~~~---~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~---~~~~~-~ 183 (1208)
+|..+|+.+..++. |. .+.....+..+|+ .++.++.+|.+.++|..+++.....+... ...+. .
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 99999999988864 22 2333333444664 68899999999999999887653211110 00000 0
Q ss_pred cccccc-ccc--cceEEEEEeccCCCe--EEEEEcCCCCEEEEEe-----------------------------------
Q 000961 184 MNTDLF-GGV--DAVVKYVLEGHDRGV--NWAAFHPTLPLIVSGA----------------------------------- 223 (1208)
Q Consensus 184 ~~~~~~-~~~--~~~~~~~~~~h~~~V--~~l~~sp~g~~L~sgs----------------------------------- 223 (1208)
....+. ... +........+..+.. ..++++|+..++++..
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000000 000 000001111111111 1256777665554421
Q ss_pred -CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCE-EEEEEeCC
Q 000961 224 -DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRF-WILASHPE 301 (1208)
Q Consensus 224 -~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i-~~la~sp~ 301 (1208)
.+|.|..||..+++. +-.... ........+...+.++++++.||.++.||..+++.+..++...... .-+.+..+
T Consensus 435 ~~~g~l~A~D~~tG~~--~W~~~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~ 511 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKA--AWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (668)
T ss_dssp GCEEEEEEEETTTTEE--EEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CccceEEEEeCCCCcE--EEEccC-CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence 247899999999886 222221 2223333445568889999999999999999999998887653211 12333445
Q ss_pred CC-EEEEEE
Q 000961 302 MN-LLAAGH 309 (1208)
Q Consensus 302 ~~-~la~g~ 309 (1208)
|+ ++++++
T Consensus 512 G~~yva~~~ 520 (668)
T 1kv9_A 512 GRQYVAIMA 520 (668)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 55 444444
No 263
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.48 E-value=3.9e-05 Score=93.75 Aligned_cols=324 Identities=9% Similarity=0.034 Sum_probs=187.7
Q ss_pred CCEEEEEec-CCeEEEEEC-CCCeEEEEeccccc----------C-EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE
Q 000961 21 RPWILASLH-SGVIQLWDY-RMGTLIDRFDEHDG----------P-VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 21 g~~Lasg~~-dg~I~iWd~-~~g~~i~~l~~h~~----------~-V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
+..+.+++. ++.|.-+|. .+|+.+-++..... . -..++. .+..+++++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456777777 889999999 89999877643211 0 012233 35578888889999999999999887
Q ss_pred EEccCC----CCEEE-EEEcCCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCC-------------------
Q 000961 88 TLLGHL----DYIRT-VQFHHEYPWIVSASD------DQTIRIWNWQSRTCISVLTGHNHY------------------- 137 (1208)
Q Consensus 88 ~l~~h~----~~I~~-v~fs~d~~~l~s~s~------Dg~I~iwd~~s~~~i~~l~~h~~~------------------- 137 (1208)
+..... ..+.+ .... ++ .+++++. ++.|..+|..+|+.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 764221 01111 1111 33 5666554 799999999999998877532211
Q ss_pred -------------------EEEEEEeeCCCEEEEEECC----------------CeEEEEECCCCccccccCCCcceeec
Q 000961 138 -------------------VMCASFHPKEDLVVSASLD----------------QTVRVWDIGALRKKTVSPADDILRLS 182 (1208)
Q Consensus 138 -------------------V~~l~~~p~~~~l~s~s~D----------------g~V~vwdl~~~~~~~~~~~~~~~~~~ 182 (1208)
...+++.++...++.++.+ +.|..+|..+++..-.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~---------- 287 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWG---------- 287 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEE----------
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEE----------
Confidence 0135566766777776642 2577778776554321
Q ss_pred cccccccccccceEEEEEecc--------CCCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeecC-c---
Q 000961 183 QMNTDLFGGVDAVVKYVLEGH--------DRGVNWAAFHPTLP---LIVSGADDRQVKLWRMNETKAWEVDTLRG-H--- 247 (1208)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~h--------~~~V~~l~~sp~g~---~L~sgs~dg~I~iwd~~~~~~~~~~~l~~-h--- 247 (1208)
+....| ..++. +...++|+ .++.++.+|.+.++|..+++......+.. .
T Consensus 288 ---------------~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 288 ---------------YQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp ---------------EESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred ---------------ecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 111111 11221 22224663 57778889999999998887632222211 0
Q ss_pred -------CCCe--------------------------EEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCC---C
Q 000961 248 -------MNNV--------------------------SCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREH---D 291 (1208)
Q Consensus 248 -------~~~V--------------------------~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~---~ 291 (1208)
..++ ..++++|+..++++.+.+....++..... +.... +
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~-----~~~g~~~~g 426 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP-----YRAGQFFVG 426 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-----CCTTSCCCC
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc-----cccCCcccc
Confidence 0111 24678888888888776655555443211 00000 0
Q ss_pred CEEEEEEeC-------CCCEEEEEECCCeeeEeeCCCcc----eEEecCCEEEEE-eCCeEEEEEccCCcceeeEeecCC
Q 000961 292 RFWILASHP-------EMNLLAAGHDSGMIVFKLERERP----AFAVSGDSLFYA-KDRFLRYYEFSTQKDTQVIPIRRP 359 (1208)
Q Consensus 292 ~i~~la~sp-------~~~~la~g~~~gi~v~~l~~~~~----~~s~~~~~L~~~-~d~~i~v~d~~~~~~~~~~~~~~~ 359 (1208)
.-..+..+| .+.+.+.--..+-.+|......+ .+...++.++++ .++.++.+|..+++.+..+.+...
T Consensus 427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 001122222 23444444455666777654332 334457778877 889999999999998766655432
Q ss_pred CCCCCCcCCeEEEEcCCCCEEEEEEe
Q 000961 360 GSTSLNQSPRTLSYSPTENAVLICSD 385 (1208)
Q Consensus 360 ~~~~~~~~i~~l~~spdg~~llv~~~ 385 (1208)
. .-..+.+..+|+.++.+..
T Consensus 507 ~------~~~p~~~~~~G~~yv~~~~ 526 (571)
T 2ad6_A 507 G------IGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp C------CSCCEEEEETTEEEEEEEE
T ss_pred c------EeeeEEEEECCEEEEEEEC
Confidence 1 1122446678876655554
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.41 E-value=2.3e-05 Score=83.63 Aligned_cols=196 Identities=10% Similarity=0.132 Sum_probs=131.4
Q ss_pred eEEEEecccccC--EEEEEEEcCCCEEEEEECCC--eEEEEECCCCeEEEEEccCCCCE-EEEEEcCCCCEEEEEE-CCC
Q 000961 42 TLIDRFDEHDGP--VRGVHFHKSQPLFVSGGDDY--KIKVWNYKMHRCLFTLLGHLDYI-RTVQFHHEYPWIVSAS-DDQ 115 (1208)
Q Consensus 42 ~~i~~l~~h~~~--V~~l~fsp~~~~Lasgs~Dg--~I~vWd~~~~~~~~~l~~h~~~I-~~v~fs~d~~~l~s~s-~Dg 115 (1208)
+.+.++ .|+.. ...+.|+ ++.++.+.+.+| .|+++|+++++.+.++....... ..+.+ ++..|..+. .++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCC
Confidence 355666 45544 4889998 677777777766 99999999999998886443321 23444 345555554 478
Q ss_pred cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 116 TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 116 ~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
.+.+||..+.+.+.++..... ...++++++.|+.+..+++|.++|..+.+.....+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~--------------------- 163 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT--------------------- 163 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEE---------------------
T ss_pred EEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEE---------------------
Confidence 999999999999999874332 23344677777777768889999998866433210
Q ss_pred EEEEEeccC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCc----------CCCeEEEEEccCCCEEE
Q 000961 196 VKYVLEGHD-RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH----------MNNVSCVMFHAKQDIIV 264 (1208)
Q Consensus 196 ~~~~~~~h~-~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h----------~~~V~~l~~sp~g~~l~ 264 (1208)
....+.. ..++.+.|. +|...+..-.++.|.+.|..+++......+.+- ......++|+|+++.|.
T Consensus 164 --V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 164 --VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp --CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred --eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 0111112 345567776 666555555688999999999987444443211 23568899999888877
Q ss_pred EEeC
Q 000961 265 SNSE 268 (1208)
Q Consensus 265 sgs~ 268 (1208)
+.+.
T Consensus 241 VTGK 244 (262)
T 3nol_A 241 VTGK 244 (262)
T ss_dssp EEET
T ss_pred EECC
Confidence 7765
No 265
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.41 E-value=2.2e-05 Score=83.77 Aligned_cols=197 Identities=11% Similarity=0.072 Sum_probs=129.4
Q ss_pred cCCCC--EEEEEEeCCCCEEEEEecCC--eEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEE-ECCCeEEEEECC
Q 000961 7 TKSNR--VKGLSFHSKRPWILASLHSG--VIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYK 81 (1208)
Q Consensus 7 ~h~~~--V~~lafspdg~~Lasg~~dg--~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd~~ 81 (1208)
.|... ..++.|+ ++.+..+.+.+| .|+++|+.+|+.+.++.-.. ........+++..|... ..++.+.+||.+
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~ 115 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIR 115 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence 44444 4889999 666666666665 89999999999998885433 33333333345555544 458899999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--C---CCEEEEEEeeCCCEEEEEECC
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH--N---HYVMCASFHPKEDLVVSASLD 156 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h--~---~~V~~l~~~p~~~~l~s~s~D 156 (1208)
+.+.+.++...... ..+++++..|+.+..++.|.++|..+.+.+..+... . ..+..+.|. +|...+..-.+
T Consensus 116 t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 116 NLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp TCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred cCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 99999988743322 333467777777777888999999999988877542 1 334567776 66544444468
Q ss_pred CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 157 QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 157 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
..|.+.|..+++............ ... .........+.++|+|+++.|.+.+.
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~----------~~~-----~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILA----------EAG-----PLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGG----------GSC-----SCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCcEEEEEECCcCcc----------ccc-----cccCcCCceEEEEEcCCCCEEEEECC
Confidence 899999998877644322110000 000 00112345789999999888877774
No 266
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.40 E-value=0.014 Score=76.70 Aligned_cols=388 Identities=11% Similarity=0.101 Sum_probs=215.6
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEe-cccccCEEEEEEEcC------CCEEEEEEC-CCeEEEEECCC
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFHKS------QPLFVSGGD-DYKIKVWNYKM 82 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp~------~~~Lasgs~-Dg~I~vWd~~~ 82 (1208)
.|...+.+ +++++.+. ++.+.++.+.++++.... ..-...|.|+++.|. ++++++|.. |++|+|+++.+
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 34444444 34566664 678888877666433211 123567999999863 469999996 99999999987
Q ss_pred CeEEEEEcc-CCCCEEEEEEc--CCCCEEEEEECCCcEEEEEC--CCCeEEEE--EecCCCCEEEEEEeeCCCEEEEEEC
Q 000961 83 HRCLFTLLG-HLDYIRTVQFH--HEYPWIVSASDDQTIRIWNW--QSRTCISV--LTGHNHYVMCASFHPKEDLVVSASL 155 (1208)
Q Consensus 83 ~~~~~~l~~-h~~~I~~v~fs--~d~~~l~s~s~Dg~I~iwd~--~s~~~i~~--l~~h~~~V~~l~~~p~~~~l~s~s~ 155 (1208)
.+.+....- .....+++.+. ....+|..|-.||.+.-+.+ .+|+.... ..-...++.-..+...+..-+.+..
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s 671 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS 671 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC
Confidence 766654321 12234444433 23468899999998866654 35544322 1112345544444444443344444
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCe-EEEEEcCC--CCEEEEEeCCCcEEEEE
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGV-NWAAFHPT--LPLIVSGADDRQVKLWR 232 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~sp~--g~~L~sgs~dg~I~iwd 232 (1208)
+....++.-.+ + ..+.- -....+ ....|+.. ..-++..+ ++.++|..
T Consensus 672 ~rp~liy~~~~-~---------------------------l~~s~-l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~ 721 (1158)
T 3ei3_A 672 DRPTVIYSSNH-K---------------------------LVFSN-VNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGT 721 (1158)
T ss_dssp SSCEEEEESSS-S---------------------------EEEEE-BSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEE
T ss_pred CCCEEEEEcCC-c---------------------------eEEec-cChHHhceEeccCcccCCCcEEEEc-CCceEEEE
Confidence 55444444321 1 00010 011112 22334321 12344443 45688888
Q ss_pred CCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-------------------------------------------
Q 000961 233 MNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED------------------------------------------- 269 (1208)
Q Consensus 233 ~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d------------------------------------------- 269 (1208)
+.....+.+.+++- ...+..++++|..+.++.+..+
T Consensus 722 i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1158)
T 3ei3_A 722 IDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF 800 (1158)
T ss_dssp ECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred ecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence 87655555555543 3578889999877765543311
Q ss_pred ------CcEEEEeCCCCeeEEEeecCCC-CEEEEEEe---C-CCCEEEEEEC-----------CCeeeEeeCCCc-----
Q 000961 270 ------KSIRVWDVTKRTGVQTFRREHD-RFWILASH---P-EMNLLAAGHD-----------SGMIVFKLERER----- 322 (1208)
Q Consensus 270 ------g~I~vwd~~~~~~~~~~~~~~~-~i~~la~s---p-~~~~la~g~~-----------~gi~v~~l~~~~----- 322 (1208)
+.|++.|..+.+.+..+.-... .+.+++.- . ...++++|+. +.+.+|++...+
T Consensus 801 g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~ 880 (1158)
T 3ei3_A 801 GEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA 880 (1158)
T ss_dssp CCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred CCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence 2477888777777776664443 34555432 2 2468888861 235566664221
Q ss_pred --------ceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEE
Q 000961 323 --------PAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELY 394 (1208)
Q Consensus 323 --------~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~ 394 (1208)
.++...+++|+.+..+++++|++...+.+. ..... ...+..+.....+++++++.- .. .+.++
T Consensus 881 ~~~v~g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~-~~~~~------~~~i~~~~l~~~~~~I~vgD~-~~-Sv~~~ 951 (1158)
T 3ei3_A 881 EKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNH------YNNIMALYLKTKGDFILVGDL-MR-SVLLL 951 (1158)
T ss_dssp EEEESSCEEEEEEETTEEEEEETTEEEEEEECTTSCEE-EEEEE------CCCSCEEEEEEETTEEEEEES-SB-CEEEE
T ss_pred EEEcCCcCEEEeeeCCEEEEEcCCEEEEEECCCCceEE-EEeec------cccEEEEEEeccCCEEEEEEh-hh-eEEEE
Confidence 144445678888889999999998765433 11111 113333344345666665433 32 45554
Q ss_pred EccCCCCCCCc-ccccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC
Q 000961 395 VIPKDSIGRGD-SVQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN 443 (1208)
Q Consensus 395 ~l~~~~~~~~~-~~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~ 443 (1208)
.+.... .... ...+.....++++.|..++.++++.. +|.+.+.....
T Consensus 952 ~y~~~~-~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~-~gNl~vl~~~~ 999 (1158)
T 3ei3_A 952 AYKPME-GNFEEIARDFNPNWMSAVEILDDDNFLGAEN-AFNLFVCQKDS 999 (1158)
T ss_dssp EEETTT-TEEEEEEECCSCBCEEEEEEEETTEEEEEET-TSEEEEEEECT
T ss_pred EEEcCC-CeEEEEEeecccccEEEEEEEccCcEEEEcC-CCcEEEEecCC
Confidence 443321 1111 01233455788999988876666554 89999887663
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.40 E-value=0.00012 Score=82.51 Aligned_cols=259 Identities=12% Similarity=0.034 Sum_probs=150.1
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec-----------------CcCCCeEEEEEcc-CCC
Q 000961 200 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR-----------------GHMNNVSCVMFHA-KQD 261 (1208)
Q Consensus 200 ~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~-----------------~h~~~V~~l~~sp-~g~ 261 (1208)
+.+.-.....++|++++.++.++..++.|..|+..++......... .....+..+++.+ +++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 3333344567889999987888888999999998776532111100 0123578899998 555
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEeec-----CCCCEEEEEEeC-CCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEE
Q 000961 262 IIVSNSEDKSIRVWDVTKRTGVQTFRR-----EHDRFWILASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA 335 (1208)
Q Consensus 262 ~l~sgs~dg~I~vwd~~~~~~~~~~~~-----~~~~i~~la~sp-~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~ 335 (1208)
|+++...+.|..+|..++.. ..+.. .......+++.+ +|+++++...... ........+ ..+ .
T Consensus 94 -l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~---~~~~~~~~~-~~~-----~ 162 (322)
T 2fp8_A 94 -LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY---DDRGVQQIM-DTS-----D 162 (322)
T ss_dssp -EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSC---CTTCHHHHH-HHT-----C
T ss_pred -EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccc---cccccceeh-ccc-----C
Confidence 55555555588898765543 22211 113467899999 8887766432110 000000000 000 0
Q ss_pred eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcccccccCCce
Q 000961 336 KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDSVQDAKKGLG 415 (1208)
Q Consensus 336 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~~~~~~~~~i 415 (1208)
..+.+..+|..+++......-- . .+..++++|+++.+.++.. .++.|..|++.....+... .+....+ .
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~~-----~---~p~gia~~~dg~~lyv~d~-~~~~I~~~~~~~~~~~~~~-~~~~~~g-P 231 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKEL-----H---VPGGAEVSADSSFVLVAEF-LSHQIVKYWLEGPKKGTAE-VLVKIPN-P 231 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEEE-----S---CCCEEEECTTSSEEEEEEG-GGTEEEEEESSSTTTTCEE-EEEECSS-E
T ss_pred CCceEEEEeCCCCEEEEeccCC-----c---cCcceEECCCCCEEEEEeC-CCCeEEEEECCCCcCCccc-eEEeCCC-C
Confidence 1355667776655432221110 1 5678999999997776644 4568888887753322211 1111223 6
Q ss_pred EEEEEEeCCcEEEEEcC----------CCEEEEEecCCceeeeecCCc-----ceEEEEEeCCccEEEE--eCCeEEEEE
Q 000961 416 GSAIFIARNRFAVLDKS----------SNQVLVKNLKNEVVKKSILPI-----AADAIFYAGTGNLLCR--AEDRVVIFD 478 (1208)
Q Consensus 416 ~~~~fs~d~~~l~~~~~----------dg~I~Iwdl~~~~~~~l~~~~-----~v~~i~~s~dg~~Las--~dg~v~lwd 478 (1208)
..+++.++|++.++... .+.|..+|.+++.+..+..+. .+..+.+ .+|++.++ ..+.|..++
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 67888899987777653 356888887777777666442 4556655 45666666 367788887
Q ss_pred cCC
Q 000961 479 LQQ 481 (1208)
Q Consensus 479 l~~ 481 (1208)
+..
T Consensus 311 ~~~ 313 (322)
T 2fp8_A 311 YDK 313 (322)
T ss_dssp C--
T ss_pred ccc
Confidence 753
No 268
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.39 E-value=7e-05 Score=80.94 Aligned_cols=208 Identities=8% Similarity=-0.007 Sum_probs=138.2
Q ss_pred CeEEEEeccccc--CEEEEEEEcCCCEEEEEEC--CCeEEEEECCCCeEEEEEccCC-CCEEEEEEcCCCCEEEEEE-CC
Q 000961 41 GTLIDRFDEHDG--PVRGVHFHKSQPLFVSGGD--DYKIKVWNYKMHRCLFTLLGHL-DYIRTVQFHHEYPWIVSAS-DD 114 (1208)
Q Consensus 41 g~~i~~l~~h~~--~V~~l~fsp~~~~Lasgs~--Dg~I~vWd~~~~~~~~~l~~h~-~~I~~v~fs~d~~~l~s~s-~D 114 (1208)
.+.+.++ .|.. ....+.|++++.++++.+. ++.|.++|..+++.+.++.-.. .....+++. +..|+.+. .+
T Consensus 9 ~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3456666 3553 3689999998765555543 5799999999999998875322 223345555 44555544 57
Q ss_pred CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccc
Q 000961 115 QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (1208)
Q Consensus 115 g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1208)
+.+.++|..+.+.+.++...... ...++++++.++++..+++|.++|..+.+.....
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I--------------------- 142 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKH--------------------- 142 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEE---------------------
T ss_pred CEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEE---------------------
Confidence 89999999999999988633111 2346668877777778899999999886543211
Q ss_pred eEEEEEec---cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCc-----------CCCeEEEEEccCC
Q 000961 195 VVKYVLEG---HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH-----------MNNVSCVMFHAKQ 260 (1208)
Q Consensus 195 ~~~~~~~~---h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h-----------~~~V~~l~~sp~g 260 (1208)
.... .-..++.+.|. +|...+....++.|.+.|..+++......+.+. ......++|+|++
T Consensus 143 ----~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 143 ----NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp ----ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred ----EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 1111 11246778888 675555555688999999999987333333211 1356899999998
Q ss_pred CEE-EEEeCCCcEEEEeCCC
Q 000961 261 DII-VSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 261 ~~l-~sgs~dg~I~vwd~~~ 279 (1208)
+.+ +++...+.+.+.++..
T Consensus 218 ~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 218 KRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TEEEEEETTCSEEEEEEEEE
T ss_pred CEEEEECCCCCeEEEEEEec
Confidence 755 5555677788777653
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.34 E-value=0.00038 Score=79.35 Aligned_cols=247 Identities=9% Similarity=-0.004 Sum_probs=156.3
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEE-ECCCeEEEEECCCCeEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd~~~~~~~~ 87 (1208)
.+..+|.+..+ ..+|+.+. ...|+..++........... .....+++|++.+..|... ...+.|..++...+....
T Consensus 33 ~d~~~C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCccccccc-CceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 44556777666 45666654 44588888765554444433 3447899999866655554 467899999988665444
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-C-CeEEEEEC
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-D-QTVRVWDI 164 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~-s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-D-g~V~vwdl 164 (1208)
.+.........+++.+.+..|+.+ ...+.|.+.+.........+...-.....++++|.+..|+.... . +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 343334456788998766555544 45678999998765443344444466789999997666665554 3 67888887
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEe
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDT 243 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~ 243 (1208)
.+...... ....-...+.++++|++..|..+. ..+.|..+++..... ...
T Consensus 190 dG~~~~~~---------------------------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~--~~~ 240 (349)
T 3v64_C 190 DGSGRRII---------------------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR--KAV 240 (349)
T ss_dssp TSCSCEES---------------------------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE
T ss_pred CCCCcEEE---------------------------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce--EEE
Confidence 65322110 111223467899998776666554 567899999876543 222
Q ss_pred ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec
Q 000961 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 244 l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 288 (1208)
..........+++ ..+.++++-...+.|..++..+++....+..
T Consensus 241 ~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 241 ISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp ECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 2333455677887 3455566666677888888666766655543
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.33 E-value=0.001 Score=74.70 Aligned_cols=236 Identities=4% Similarity=-0.074 Sum_probs=149.0
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEE-ECCCeEEEEECCC----CeEEEEEccCCCCE
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYKM----HRCLFTLLGHLDYI 96 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd~~~----~~~~~~l~~h~~~I 96 (1208)
++|+.+. ...|+..|+.+++....+. .-....+++|++.+..|..+ ..++.|..++... ......+.......
T Consensus 2 ~~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 2 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp CEEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred CEEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 3566654 4568899988776555554 34457899999876655544 4568999999875 22222233233456
Q ss_pred EEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC--CeEEEEECCCCcccccc
Q 000961 97 RTVQFHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD--QTVRVWDIGALRKKTVS 173 (1208)
Q Consensus 97 ~~v~fs~d~~~l~s~-s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D--g~V~vwdl~~~~~~~~~ 173 (1208)
..+++.+.+..|+.+ ...+.|.+.+.........+.........++++|.+..|+.+... +.|...++.+....
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~--- 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--- 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE---
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE---
Confidence 788998765555544 557899999987654443444344577899999977766666543 67888877542211
Q ss_pred CCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCcCCCeE
Q 000961 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVS 252 (1208)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~~V~ 252 (1208)
......-...+.++++|++..|..+. ..+.|..+++.......+...........
T Consensus 157 ------------------------~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~ 212 (316)
T 1ijq_A 157 ------------------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF 212 (316)
T ss_dssp ------------------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred ------------------------EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcE
Confidence 01112234567899999877766655 56789999998654322222222234567
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee
Q 000961 253 CVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287 (1208)
Q Consensus 253 ~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~ 287 (1208)
.+++. .+.++++-...+.|..++..+++.+..+.
T Consensus 213 giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 213 SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 78875 45556666667889999887777665554
No 271
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.32 E-value=6.1e-05 Score=91.99 Aligned_cols=281 Identities=9% Similarity=0.013 Sum_probs=161.7
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEecccc--c--CEEE-EEEEcCCCEEEEEEC------CCeEEEEECCCCeEEEEE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHD--G--PVRG-VHFHKSQPLFVSGGD------DYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~--~--~V~~-l~fsp~~~~Lasgs~------Dg~I~vWd~~~~~~~~~l 89 (1208)
+..+++++.++.|..+|..+|+.+-++.... . .+.+ ... .++ .+++++. ++.|..+|..+|+.+.++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999999887654211 1 1111 111 134 5555554 799999999999998876
Q ss_pred ccCCCC--------------------------------------EEEEEEcCCCCEEEEEECC----------------C
Q 000961 90 LGHLDY--------------------------------------IRTVQFHHEYPWIVSASDD----------------Q 115 (1208)
Q Consensus 90 ~~h~~~--------------------------------------I~~v~fs~d~~~l~s~s~D----------------g 115 (1208)
...... ...+++.++...++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 532110 0135566666677766532 3
Q ss_pred cEEEEECCCCeEEEEEecC--C--------CCEEEEEEeeCCC---EEEEEECCCeEEEEECCCCccccccCCCccee--
Q 000961 116 TIRIWNWQSRTCISVLTGH--N--------HYVMCASFHPKED---LVVSASLDQTVRVWDIGALRKKTVSPADDILR-- 180 (1208)
Q Consensus 116 ~I~iwd~~s~~~i~~l~~h--~--------~~V~~l~~~p~~~---~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~-- 180 (1208)
.|..+|..+|+.+..++.. . .++. +...++|+ .++.++.+|.+.++|..+++.....+......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 5999999999998887632 1 2222 22334673 57788899999999998877643321110000
Q ss_pred --ec-ccccccc-----ccccceEEEEEeccCCCe--EEEEEcCCCCEEEEEe---------------------------
Q 000961 181 --LS-QMNTDLF-----GGVDAVVKYVLEGHDRGV--NWAAFHPTLPLIVSGA--------------------------- 223 (1208)
Q Consensus 181 --~~-~~~~~~~-----~~~~~~~~~~~~~h~~~V--~~l~~sp~g~~L~sgs--------------------------- 223 (1208)
+. .....+. ............+..+.. ..++++|+..++++.+
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 00 0000000 000000011111111111 2467777766666553
Q ss_pred ----------CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCC-
Q 000961 224 ----------DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDR- 292 (1208)
Q Consensus 224 ----------~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~- 292 (1208)
.+|.|..||..+++. +-... +...+.+..+...+..++.++.||.|+.||..+++.+.++......
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~--~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKA--KWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCE--EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred ccCccccCCCCCCeEEEEECCCCCE--EEEec-CCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 347899999998875 22222 1122222223335677888999999999999999999888754322
Q ss_pred EEEEEEeCCCCEEEE
Q 000961 293 FWILASHPEMNLLAA 307 (1208)
Q Consensus 293 i~~la~sp~~~~la~ 307 (1208)
-..+.+..+++.++.
T Consensus 509 ~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIG 523 (571)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eeeEEEEECCEEEEE
Confidence 112334456665443
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.31 E-value=0.00029 Score=78.75 Aligned_cols=249 Identities=9% Similarity=-0.000 Sum_probs=146.2
Q ss_pred CCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCC--cE
Q 000961 40 MGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQ--TI 117 (1208)
Q Consensus 40 ~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg--~I 117 (1208)
..+.+..+..+ ....+++|++++.++++-..++.|..||.... ....+. .......+++.++++.+++..... .|
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence 34555566433 45678999999997777768899999998753 333332 345688999999998655544322 47
Q ss_pred EEEECCCCeEEEEEec-CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceE
Q 000961 118 RIWNWQSRTCISVLTG-HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVV 196 (1208)
Q Consensus 118 ~iwd~~s~~~i~~l~~-h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1208)
..+|..+++....... .......++..+.+..+++-..++.|.++|..+.+........ .+. . .
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~-~~~-----~---~------ 162 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP-MLA-----R---S------ 162 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG-GGS-----C---S------
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECC-ccc-----c---c------
Confidence 7778777775433321 2223344554444444444435888888887653211000000 000 0 0
Q ss_pred EEEEeccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC-CceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000961 197 KYVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNE-TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRV 274 (1208)
Q Consensus 197 ~~~~~~h~~~V~~l~~sp~g~~L~sg-s~dg~I~iwd~~~-~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~v 274 (1208)
.....-...+.+ +|++..|.++ ...+.|..|++.. ++......+. .......++++++|+++++....+.|.+
T Consensus 163 --~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 163 --NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVR 237 (306)
T ss_dssp --STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred --cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEE
Confidence 000011223444 7777766555 4577899999875 3211011111 1134667899999998887777889999
Q ss_pred EeCCCCeeEE--EeecCCCCEEEEEEe---CCCCEEEEEECCC
Q 000961 275 WDVTKRTGVQ--TFRREHDRFWILASH---PEMNLLAAGHDSG 312 (1208)
Q Consensus 275 wd~~~~~~~~--~~~~~~~~i~~la~s---p~~~~la~g~~~g 312 (1208)
+|.. ++... .+.......+++++. |+++.|.+.+..+
T Consensus 238 ~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 238 IAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 9975 55432 233333568899998 8877666655433
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.28 E-value=0.00038 Score=80.60 Aligned_cols=254 Identities=9% Similarity=-0.021 Sum_probs=158.8
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEE-ECCCeEEEEECCCCeEEEEE
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYKMHRCLFTL 89 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd~~~~~~~~~l 89 (1208)
.-+|.+..+ ..+|+.+. ...|+..++..+........ .....+++|++.+..|... ...+.|..++...+.....+
T Consensus 78 ~~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SSCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred CCeECCccc-cceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 344555555 45666654 45688888876655444433 3457899999866655544 46789999998866544444
Q ss_pred ccCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-C-CeEEEEECCC
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-D-QTVRVWDIGA 166 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~-s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-D-g~V~vwdl~~ 166 (1208)
.........+++.+.+..|+.+ ...+.|.+.++........+.........++++|.+..|+.+.. . +.|..+++.+
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 4333455678888766555544 44678888888755444444444466889999997776666654 3 6788888765
Q ss_pred CccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeec
Q 000961 167 LRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLR 245 (1208)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~ 245 (1208)
..... .....-...+.++++|++..|..+. ..+.|..+++..... ...+.
T Consensus 235 ~~~~~---------------------------~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~--~~~~~ 285 (386)
T 3v65_B 235 SGRRI---------------------------IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR--KAVIS 285 (386)
T ss_dssp CSCEE---------------------------EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC--EEEEC
T ss_pred CCcEE---------------------------EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee--EEEEE
Confidence 32211 1112233467899998766666554 567899999876543 22233
Q ss_pred CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEE
Q 000961 246 GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILA 297 (1208)
Q Consensus 246 ~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la 297 (1208)
........+++ ..+.++++....+.|..++..+++....+.........++
T Consensus 286 ~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 286 QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 33455677888 4455666666778888888777776666654333333333
No 274
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.27 E-value=0.03 Score=70.98 Aligned_cols=471 Identities=12% Similarity=0.076 Sum_probs=256.1
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEe-cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEE
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
++.|.+|.-..+|. |-.|+.+| +..||-..-+..... ......|.++.-..++ .|-.|+.+| +..||..+.+...
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 56799999988885 55666777 556773221111111 1123568888877766 555666665 7899988765432
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe----cCCCCEEEEEEeeCCCEEEEEECCCeEEEEE
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT----GHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~----~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwd 163 (1208)
........|.++.. .++ .|..++.+ -|..+|..+++...... .....|.++....++. |..++.+ -|..++
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~ 171 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ-IYVGTYN-GLCRYI 171 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC-EEEEETT-EEEEEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC-EEEEeCC-CHhhCc
Confidence 11112335777754 344 46666665 68889987765433211 1234688887776666 4446654 477788
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 243 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~ 243 (1208)
..+.+....... . ........|.++...+++..|.+|+. +-+..++..+.+......
T Consensus 172 ~~~~~~~~~~~~---------~-------------~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~ 228 (758)
T 3ott_A 172 PSNGKFEGIPLP---------V-------------HSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA 228 (758)
T ss_dssp TTTTEEEEECCC---------C-------------CTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE
T ss_pred cCCCceEEecCC---------C-------------ccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC
Confidence 665332111000 0 00001234778888877776666664 458888887765422222
Q ss_pred ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee-------cCCCCEEEEEEeCCCCEEEEEECCCeeeE
Q 000961 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR-------REHDRFWILASHPEMNLLAAGHDSGMIVF 316 (1208)
Q Consensus 244 l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~-------~~~~~i~~la~sp~~~~la~g~~~gi~v~ 316 (1208)
+ ....|.++...++|.+.+ |+.+ -+.+++..++....... .....|+++....+|++.+.. ..|+.++
T Consensus 229 l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~Gl~~~ 303 (758)
T 3ott_A 229 F--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT-DYGISLS 303 (758)
T ss_dssp E--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE-SSSEEEE
T ss_pred C--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCccccc
Confidence 2 234588888887777554 4444 58888877654432211 123458899888888866544 5575443
Q ss_pred eeCCCc---------------ceEE---ecCCEEEEEeCCeEEEEEccCCcceeeEeecC--CCC-CCCCcCCeEEEEcC
Q 000961 317 KLERER---------------PAFA---VSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRR--PGS-TSLNQSPRTLSYSP 375 (1208)
Q Consensus 317 ~l~~~~---------------~~~s---~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~-~~~~~~i~~l~~sp 375 (1208)
.....- ...+ -..+.|.++..+-+..++..+++......... ... .. ...|.++.-.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~v~~i~~d~ 382 (758)
T 3ott_A 304 RYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANGLIRFTDPAGERHDAIWYRMGDKTYPLS-HNRIRHIYEDK 382 (758)
T ss_dssp CCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTEEEEESCTTSSCCCCEEECTTCSSSCCS-CSCEEEEEECT
T ss_pred ccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCcceeecccccccceeEEeccCCcCCCCC-CCceEEEEECC
Confidence 221110 0111 11234444433445555544432111111110 000 01 12577787777
Q ss_pred CCCEEEEEEecCCCEEEEEEccCCCCCCCcc--ccc-ccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC------cee
Q 000961 376 TENAVLICSDVDGGSYELYVIPKDSIGRGDS--VQD-AKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN------EVV 446 (1208)
Q Consensus 376 dg~~llv~~~~~~g~v~l~~l~~~~~~~~~~--~~~-~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~------~~~ 446 (1208)
+|+.. +.+. +-+..|+........... ... .....|.++....+|++.+... .+-|.++|... ...
T Consensus 383 ~g~lW-igt~---~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~-~~Gl~~~~~~~~~~~~~~~~ 457 (758)
T 3ott_A 383 EQQLW-IATD---GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTC-LGGIFVVDKHKLMQSTSGQY 457 (758)
T ss_dssp TSCEE-EEET---TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEES-SSCEEEEEHHHHHHCCSSEE
T ss_pred CCCEE-EEeC---CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEEC-CCceEEEccccccccCCcce
Confidence 77743 3332 346666654332110000 000 0123466777666777666544 44577777542 111
Q ss_pred ---eeec----CC-cceEEEEEeCCccEEE--EeCCeEEEEEcCCCeEEEEEeC-----CCeeEEEECCCCCEEEEEeCC
Q 000961 447 ---KKSI----LP-IAADAIFYAGTGNLLC--RAEDRVVIFDLQQRLVLGDLQT-----PFVKYVVWSNDMESVALLSKH 511 (1208)
Q Consensus 447 ---~~l~----~~-~~v~~i~~s~dg~~La--s~dg~v~lwdl~~~~~l~~~~~-----~~v~~v~ws~dg~~la~~s~~ 511 (1208)
..+. .+ ..|.+|...++|.+.+ .+.+.|..||..+++....... ..+.++.-+.+|..- +++..
T Consensus 458 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW-igt~~ 536 (758)
T 3ott_A 458 IAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLW-VGFHG 536 (758)
T ss_dssp ECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE-EEETT
T ss_pred ecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEE-EEecC
Confidence 1111 11 1588999999999887 5567799999987765432211 346777777787755 45667
Q ss_pred eEEEEecCccce
Q 000961 512 AIIIASKKLVHQ 523 (1208)
Q Consensus 512 ~i~i~~~~~~~~ 523 (1208)
+++.++......
T Consensus 537 Gl~~~~~~~~~~ 548 (758)
T 3ott_A 537 GVMRINPKDESQ 548 (758)
T ss_dssp EEEEECC--CCC
T ss_pred ceEEEecCCCce
Confidence 898888765443
No 275
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.26 E-value=4.4e-05 Score=81.39 Aligned_cols=191 Identities=10% Similarity=-0.004 Sum_probs=125.1
Q ss_pred EEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEEEEc
Q 000961 12 VKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFTLL 90 (1208)
Q Consensus 12 V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~ 90 (1208)
..++.|+. +.+..+.+.+|.|+++|+.+|+.+.++ -..........+++. +.+....++.+.+||.++.+.+.++.
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 47899984 556666677889999999999988877 223333322333444 44445568999999999999999987
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCEEEEEEeeCCCEEEEEECCCeEEEEECC
Q 000961 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN-----HYVMCASFHPKEDLVVSASLDQTVRVWDIG 165 (1208)
Q Consensus 91 ~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~-----~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~ 165 (1208)
..... ..+ ++++..|+.+..++.|.++|..+.+.+..+.... ..+..+.|. +|...+..-.+..|.+.|..
T Consensus 134 ~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 134 YSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp CSSCC-CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred CCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 43322 233 3577888888889999999999999888775322 245667777 66544444467899999998
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA 223 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs 223 (1208)
+++............. . .. .........+.++|+|+++.|++.+
T Consensus 210 TG~V~~~Idl~~L~~~------~----~~----~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 210 TGTVVGVIDASALTRA------V----AG----QVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCBEEEEEECHHHHHH------H----TT----TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEEECCCCccc------c----cc----cccCcCCceEEEEEcCCCCEEEEeC
Confidence 8775432211000000 0 00 0011234578999999877666655
No 276
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.26 E-value=6.7e-05 Score=91.60 Aligned_cols=284 Identities=11% Similarity=0.045 Sum_probs=160.1
Q ss_pred EEEeCCCCE----EEEEecCCeEEEEECCCCeEEEEecccc--c--CEEE-EEEEcCCCEEEEEE------CCCeEEEEE
Q 000961 15 LSFHSKRPW----ILASLHSGVIQLWDYRMGTLIDRFDEHD--G--PVRG-VHFHKSQPLFVSGG------DDYKIKVWN 79 (1208)
Q Consensus 15 lafspdg~~----Lasg~~dg~I~iWd~~~g~~i~~l~~h~--~--~V~~-l~fsp~~~~Lasgs------~Dg~I~vWd 79 (1208)
++++|.+.. |++++.++.|.-+|..+|+.+-+..... . .+++ ... .++ .+++++ .+|.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEE
Confidence 456544444 7888889999999999999887654221 0 1111 111 134 455554 379999999
Q ss_pred CCCCeEEEEEccCCCC-------------------------------------E-EEEEEcCCCCEEEEEECC-------
Q 000961 80 YKMHRCLFTLLGHLDY-------------------------------------I-RTVQFHHEYPWIVSASDD------- 114 (1208)
Q Consensus 80 ~~~~~~~~~l~~h~~~-------------------------------------I-~~v~fs~d~~~l~s~s~D------- 114 (1208)
.++|+.+..+...... + ..+++.++...++.++.+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 9999998877532211 0 134555677777777665
Q ss_pred ---------CcEEEEECCCCeEEEEEecCCC----------CEEEEEEe-eCC---CEEEEEECCCeEEEEECCCCcccc
Q 000961 115 ---------QTIRIWNWQSRTCISVLTGHNH----------YVMCASFH-PKE---DLVVSASLDQTVRVWDIGALRKKT 171 (1208)
Q Consensus 115 ---------g~I~iwd~~s~~~i~~l~~h~~----------~V~~l~~~-p~~---~~l~s~s~Dg~V~vwdl~~~~~~~ 171 (1208)
+.|..+|..+|+.+..++...+ ++. +... .+| ..++.++.+|.+.++|..+++...
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 3899999999999988764322 222 2222 456 467778899999999998877653
Q ss_pred ccCCCccee----ec-cccccc-----cccccceEEEEEeccCCC--eEEEEEcCCCCEEEEEe----------------
Q 000961 172 VSPADDILR----LS-QMNTDL-----FGGVDAVVKYVLEGHDRG--VNWAAFHPTLPLIVSGA---------------- 223 (1208)
Q Consensus 172 ~~~~~~~~~----~~-~~~~~~-----~~~~~~~~~~~~~~h~~~--V~~l~~sp~g~~L~sgs---------------- 223 (1208)
..+...... +. .....+ .............+..+. -..++++|+..++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 322110000 00 000000 000000001111111111 11345555544443321
Q ss_pred -----------------------CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 224 -----------------------DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 224 -----------------------~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
..|.|.-||+.+++..-..... .+..+-.+...+.+++.++.||.++.||..++
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence 3478899999888752111111 11111112235677888999999999999999
Q ss_pred eeEEEeecCCCCE-EEEEEeCCCCE
Q 000961 281 TGVQTFRREHDRF-WILASHPEMNL 304 (1208)
Q Consensus 281 ~~~~~~~~~~~~i-~~la~sp~~~~ 304 (1208)
+.+..++.....+ .-+.+..+|+.
T Consensus 505 ~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 505 DLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CEEEEeeCCCCcEeccEEEEeCCEE
Confidence 9999887543321 22444456653
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.25 E-value=0.00055 Score=77.26 Aligned_cols=265 Identities=9% Similarity=0.039 Sum_probs=148.9
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEe----cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF----DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR 84 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l----~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~ 84 (1208)
...+.+|.|.+++..+++ +..|.|. .....|+.-... ......+.+|.|++ +..++ ++.++.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 457999999888877775 4677653 333344322222 12345789999986 44444 455665544 323233
Q ss_pred EEEEEc---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCEEEEEEeeCCCEEEEEECCCeEE
Q 000961 85 CLFTLL---GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCI-SVLTGHNHYVMCASFHPKEDLVVSASLDQTVR 160 (1208)
Q Consensus 85 ~~~~l~---~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i-~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~ 160 (1208)
.-.... .+...+..+.+.+++..++.+ .+|.|.. ..+.++.- .....+...+..+.+.|++.+++++. +|.+.
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~ 186 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFY 186 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEE
Confidence 222221 234567888887777655544 5665432 22233322 22234566789999999888776654 44443
Q ss_pred -EEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 000961 161 -VWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 239 (1208)
Q Consensus 161 -vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~ 239 (1208)
-+|-....- ..........+..+.+.+++..+ .++.+|.+.+.+...++.|
T Consensus 187 ~S~d~gG~tW---------------------------~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 187 STWEPGQTAW---------------------------EPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp EEECTTCSSC---------------------------EEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEE
T ss_pred EEeCCCCCce---------------------------eECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCee
Confidence 333211110 00112345577888999988755 4556787777654435544
Q ss_pred EEEeec--CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec---CCCCEEEEEEeCCCCEEEEEECC
Q 000961 240 EVDTLR--GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR---EHDRFWILASHPEMNLLAAGHDS 311 (1208)
Q Consensus 240 ~~~~l~--~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~---~~~~i~~la~sp~~~~la~g~~~ 311 (1208)
...... .+...+.++.+.+++..++++. +|.| .+....++.-..+.. ....+..+.+.+++.++++|.++
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G 313 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKG 313 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTT
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCc
Confidence 322222 1234588999998887666654 6666 344455554444432 23467788887666666666543
No 278
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.23 E-value=0.00021 Score=75.65 Aligned_cols=195 Identities=9% Similarity=0.037 Sum_probs=125.9
Q ss_pred CCEEEEEEeCCCCEEEEEecC--CeEEEEECCCCeEEEEecccccCE-EEEEEEcCCCEEEEEECCCeEEEEECCCCeEE
Q 000961 10 NRVKGLSFHSKRPWILASLHS--GVIQLWDYRMGTLIDRFDEHDGPV-RGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~d--g~I~iWd~~~g~~i~~l~~h~~~V-~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~ 86 (1208)
.-..++.|++ +.+..+.+.. +.|+.+|+.+|+.+.+..-..... -.+++. .+++.+....++.+.+||.++.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4477999997 4455555554 489999999999998875333221 233443 2334444456899999999999999
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCEEEEEEeeCCCEEEEEECCCeEEE
Q 000961 87 FTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN-----HYVMCASFHPKEDLVVSASLDQTVRV 161 (1208)
Q Consensus 87 ~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~-----~~V~~l~~~p~~~~l~s~s~Dg~V~v 161 (1208)
.++...... ..+ .+++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|...+..-.+..|.+
T Consensus 99 ~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 99 ARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR 174 (243)
T ss_dssp EEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence 998743332 333 3567777777778999999999999888776422 345667766 5554444436789999
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD 224 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~ 224 (1208)
.|..+++............ .... .........+.++++|+++.|.+.+.
T Consensus 175 IDp~tG~V~~~idl~~l~~----------~~~~----~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQALVP----------DADA----LTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ECTTTCBEEEEEECGGGST----------TTTS----CCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEECCcCcc----------cccc----ccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9998877654322110000 0000 00112245789999998887777664
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.20 E-value=0.0027 Score=73.71 Aligned_cols=247 Identities=4% Similarity=-0.089 Sum_probs=158.5
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEE-ECCCeEEEEECCCC----eEEEEEccCCCCE
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYKMH----RCLFTLLGHLDYI 96 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd~~~~----~~~~~l~~h~~~I 96 (1208)
.+|+.+. ...|+..++......... .....+.+++|++.+..|... ...+.|..+++... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 4566553 578999998766544444 345568899999876655555 45688999998752 2233333345678
Q ss_pred EEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC--CCeEEEEECCCCcccccc
Q 000961 97 RTVQFHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVWDIGALRKKTVS 173 (1208)
Q Consensus 97 ~~v~fs~d~~~l~s~-s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~--Dg~V~vwdl~~~~~~~~~ 173 (1208)
..+++.+.+..|+.+ ...+.|.+.++........+.........++++|.+..|+.... .+.|...++.+.....
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~-- 239 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-- 239 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--
Confidence 889998855555544 45688999998766555555544556889999997777766653 3678888876532211
Q ss_pred CCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCcCCCeE
Q 000961 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVS 252 (1208)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~~V~ 252 (1208)
.....-...+.++++|++..|..+. ..+.|..+|+.......+...........
T Consensus 240 -------------------------~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~ 294 (400)
T 3p5b_L 240 -------------------------LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF 294 (400)
T ss_dssp -------------------------EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEE
T ss_pred -------------------------EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCE
Confidence 1122234568899998877776665 46789999988765432332222334556
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEE
Q 000961 253 CVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAS 298 (1208)
Q Consensus 253 ~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~ 298 (1208)
.+++. .+.++++-...+.|..+|..+++.+..+.........+..
T Consensus 295 gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 295 SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 77773 3455566666788999998788777776654444555443
No 280
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.18 E-value=0.00033 Score=85.56 Aligned_cols=282 Identities=10% Similarity=0.014 Sum_probs=160.0
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEeccccc----CEE-EEEEEc---CCC-EEEEEE------CCCeEEEEECCCCeE
Q 000961 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHDG----PVR-GVHFHK---SQP-LFVSGG------DDYKIKVWNYKMHRC 85 (1208)
Q Consensus 21 g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~----~V~-~l~fsp---~~~-~Lasgs------~Dg~I~vWd~~~~~~ 85 (1208)
+..+++++.++.|.-+|..+|+.+-+...... .+. ...... +++ .+++++ .++.|..+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 55778888899999999999999876643210 111 111111 233 555654 378999999999998
Q ss_pred EEEEccCCCCE-----------------------------------------EEEEEcCCCCEEEEEEC-----------
Q 000961 86 LFTLLGHLDYI-----------------------------------------RTVQFHHEYPWIVSASD----------- 113 (1208)
Q Consensus 86 ~~~l~~h~~~I-----------------------------------------~~v~fs~d~~~l~s~s~----------- 113 (1208)
+.+.......+ ..+++.|+...++.++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 87654211111 12455666677776663
Q ss_pred ---------C----CcEEEEECCCCeEEEEEec--CC--------CCEEEEEEe-eCCC---EEEEEECCCeEEEEECCC
Q 000961 114 ---------D----QTIRIWNWQSRTCISVLTG--HN--------HYVMCASFH-PKED---LVVSASLDQTVRVWDIGA 166 (1208)
Q Consensus 114 ---------D----g~I~iwd~~s~~~i~~l~~--h~--------~~V~~l~~~-p~~~---~l~s~s~Dg~V~vwdl~~ 166 (1208)
| +.|..+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.+.++|..+
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 5899999999999988753 32 1222 1221 3563 788899999999999988
Q ss_pred CccccccCCCccee----eccc-cccc----ccc-------ccceEEEEEeccCCC--eEEEEEcCCCCEEEEEe-----
Q 000961 167 LRKKTVSPADDILR----LSQM-NTDL----FGG-------VDAVVKYVLEGHDRG--VNWAAFHPTLPLIVSGA----- 223 (1208)
Q Consensus 167 ~~~~~~~~~~~~~~----~~~~-~~~~----~~~-------~~~~~~~~~~~h~~~--V~~l~~sp~g~~L~sgs----- 223 (1208)
++.....+...... +... ...+ +.. ..........+..+. -..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 77653322111000 0000 0000 000 000000111111111 11345566544444332
Q ss_pred ----------------------------CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000961 224 ----------------------------DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVW 275 (1208)
Q Consensus 224 ----------------------------~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vw 275 (1208)
.+|.|.-||+.+++.. -..... .++..-.....+.+++.++.||.++.|
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~--W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~ 512 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV--WEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAF 512 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE--EEEEES-SCCCSCCEEETTTEEEEECTTSEEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE--EEecCC-CCCcccceEeCCCEEEEECCCCcEEEE
Confidence 2578999999988752 222111 122111122246778889999999999
Q ss_pred eCCCCeeEEEeecCCCCE-EEEEEeCCCCEEE
Q 000961 276 DVTKRTGVQTFRREHDRF-WILASHPEMNLLA 306 (1208)
Q Consensus 276 d~~~~~~~~~~~~~~~~i-~~la~sp~~~~la 306 (1208)
|..+++.+..++...... .-+.+..+|+..+
T Consensus 513 D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 513 DAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 999999999888654322 1255556776443
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.15 E-value=0.0001 Score=93.41 Aligned_cols=152 Identities=9% Similarity=0.041 Sum_probs=97.8
Q ss_pred CEEEEEEe-CCCCEEEEEec-CC----eEEEEECCCC-eEEE-EecccccCEEEEEEEcCCCEEEEEECC-----CeEEE
Q 000961 11 RVKGLSFH-SKRPWILASLH-SG----VIQLWDYRMG-TLID-RFDEHDGPVRGVHFHKSQPLFVSGGDD-----YKIKV 77 (1208)
Q Consensus 11 ~V~~lafs-pdg~~Lasg~~-dg----~I~iWd~~~g-~~i~-~l~~h~~~V~~l~fsp~~~~Lasgs~D-----g~I~v 77 (1208)
.+...+|| |||++||.+.. +| .|+++|+.+| +.+. .+ ......++|+||++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99999987654 23 5999999998 6322 12 1123568899999988777654 36888
Q ss_pred EECCCCeE--EEEEc-cCCCCEEEEEEcCCCCEEEEEEC---CCcEEEEECCCC--eE-EEEE-ecCCCCEEEEEEeeCC
Q 000961 78 WNYKMHRC--LFTLL-GHLDYIRTVQFHHEYPWIVSASD---DQTIRIWNWQSR--TC-ISVL-TGHNHYVMCASFHPKE 147 (1208)
Q Consensus 78 Wd~~~~~~--~~~l~-~h~~~I~~v~fs~d~~~l~s~s~---Dg~I~iwd~~s~--~~-i~~l-~~h~~~V~~l~~~p~~ 147 (1208)
+++.++.. ...+. .+......+.|+||+++|+..+. ...|.++|+.++ +. +..+ ........++.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 89877642 22222 23345678999999998887663 346888898875 22 1333 33344555555543 5
Q ss_pred CEEEEEEC-C----CeEEEEECCC
Q 000961 148 DLVVSASL-D----QTVRVWDIGA 166 (1208)
Q Consensus 148 ~~l~s~s~-D----g~V~vwdl~~ 166 (1208)
+.|+..+. + ..|..+++.+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTS
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCC
Confidence 55555443 3 2566666653
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.14 E-value=1.9e-05 Score=98.72 Aligned_cols=274 Identities=8% Similarity=0.010 Sum_probs=154.5
Q ss_pred EEEEeC-CCCEEEEEecCC-----------eEEEEECCCCeEEE--Ee-cccccCEEEEEEEcCCCEEEEEE-CCCeEEE
Q 000961 14 GLSFHS-KRPWILASLHSG-----------VIQLWDYRMGTLID--RF-DEHDGPVRGVHFHKSQPLFVSGG-DDYKIKV 77 (1208)
Q Consensus 14 ~lafsp-dg~~Lasg~~dg-----------~I~iWd~~~g~~i~--~l-~~h~~~V~~l~fsp~~~~Lasgs-~Dg~I~v 77 (1208)
++++.| +++.++.|+.++ .+.+||..+++... .+ ..+.....++++..++.++++|| .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 888888887542 68899988875322 22 12333345677889999999998 4568999
Q ss_pred EECCCCeEEEEEccCCC-CEEEEEEcCCCCEEEEEE-CC-----CcEEEEECCCCeEEEEE----ecCCCCEEEEEEeeC
Q 000961 78 WNYKMHRCLFTLLGHLD-YIRTVQFHHEYPWIVSAS-DD-----QTIRIWNWQSRTCISVL----TGHNHYVMCASFHPK 146 (1208)
Q Consensus 78 Wd~~~~~~~~~l~~h~~-~I~~v~fs~d~~~l~s~s-~D-----g~I~iwd~~s~~~i~~l----~~h~~~V~~l~~~p~ 146 (1208)
||..+.+....-.-+.. .-.+++..++++.++.|+ .+ ..+.+||..+++-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 99987765432211111 223456677899888888 34 57999999887643320 000000000111233
Q ss_pred CCEEEEEECCC---------eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe-----ccCCCeEEEEE
Q 000961 147 EDLVVSASLDQ---------TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-----GHDRGVNWAAF 212 (1208)
Q Consensus 147 ~~~l~s~s~Dg---------~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~V~~l~~ 212 (1208)
+..++.++.+| .+..||..+...... ...... .....-.++.|
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~-----------------------~~~~~~~~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS-----------------------AGKRQSNRGVAPDAMCGNAVMY 406 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE-----------------------EEECEETTEECCCCBTCEEEEE
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeec-----------------------CCccccccccCCCCCCCceEec
Confidence 44445554443 456777665331110 000000 00112234444
Q ss_pred cC-CCCEEEEEeCCC-----------cEEEEECCCCceeEEEeecCcCCC-eEEEEEccCCCEEEEEeCC----------
Q 000961 213 HP-TLPLIVSGADDR-----------QVKLWRMNETKAWEVDTLRGHMNN-VSCVMFHAKQDIIVSNSED---------- 269 (1208)
Q Consensus 213 sp-~g~~L~sgs~dg-----------~I~iwd~~~~~~~~~~~l~~h~~~-V~~l~~sp~g~~l~sgs~d---------- 269 (1208)
.. +++++++|+.++ .|.+||..+.....+..-..+... -.+++..|++++++.|+.+
T Consensus 407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence 43 677788887532 577888877664222200111222 2345667899999999854
Q ss_pred -CcEEEEeCCCCeeEEEee--cCCCCEEEEEEeCCCCEEEEEEC
Q 000961 270 -KSIRVWDVTKRTGVQTFR--REHDRFWILASHPEMNLLAAGHD 310 (1208)
Q Consensus 270 -g~I~vwd~~~~~~~~~~~--~~~~~i~~la~sp~~~~la~g~~ 310 (1208)
..+.+||..+.+....-. ..........+.|++++++.|+.
T Consensus 487 ~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 468999987765433211 11122334556789999998874
No 283
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.14 E-value=0.00056 Score=72.32 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=127.6
Q ss_pred eEEEEeccccc--CEEEEEEEcCCCEEEEEECC--CeEEEEECCCCeEEEEEccCCCC-EEEEEEcCCCCEEEE-EECCC
Q 000961 42 TLIDRFDEHDG--PVRGVHFHKSQPLFVSGGDD--YKIKVWNYKMHRCLFTLLGHLDY-IRTVQFHHEYPWIVS-ASDDQ 115 (1208)
Q Consensus 42 ~~i~~l~~h~~--~V~~l~fsp~~~~Lasgs~D--g~I~vWd~~~~~~~~~l~~h~~~-I~~v~fs~d~~~l~s-~s~Dg 115 (1208)
+.+.++ .|+. -..++.|++ +.++.+.+.+ ..|+++|+.+++.+.++.-.... -..+++. +..|.. .-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence 455566 4554 377999987 5666666665 49999999999999887643332 1234443 344444 44578
Q ss_pred cEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccce
Q 000961 116 TIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAV 195 (1208)
Q Consensus 116 ~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1208)
.+.+||..+.+.+.++...... ..+.+++..|+.+..++.|.++|..+.+......
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~--------------------- 141 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIK--------------------- 141 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEE---------------------
T ss_pred EEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEE---------------------
Confidence 9999999999999998743322 2334567777777778999999998866433210
Q ss_pred EEEEEecc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecC-----------cCCCeEEEEEccCCCEE
Q 000961 196 VKYVLEGH-DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG-----------HMNNVSCVMFHAKQDII 263 (1208)
Q Consensus 196 ~~~~~~~h-~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~-----------h~~~V~~l~~sp~g~~l 263 (1208)
....+. -..++.+.|. +|...+..-.+..|.+.|..+++......+.+ .......|+++|+++.|
T Consensus 142 --V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 142 --VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp --CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred --EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 001111 1345566665 56555555467889999999998744333331 12356889999988777
Q ss_pred EEEeC
Q 000961 264 VSNSE 268 (1208)
Q Consensus 264 ~sgs~ 268 (1208)
.+.+.
T Consensus 219 fVTGK 223 (243)
T 3mbr_X 219 FVTGK 223 (243)
T ss_dssp EEEET
T ss_pred EEECC
Confidence 76654
No 284
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.14 E-value=0.0003 Score=75.06 Aligned_cols=194 Identities=8% Similarity=-0.017 Sum_probs=128.4
Q ss_pred eEEEEecccccC--EEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCC-EEEEEEcCCCCEEEEEECCCcEE
Q 000961 42 TLIDRFDEHDGP--VRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDY-IRTVQFHHEYPWIVSASDDQTIR 118 (1208)
Q Consensus 42 ~~i~~l~~h~~~--V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~-I~~v~fs~d~~~l~s~s~Dg~I~ 118 (1208)
+.+.++ .|+.. ...+.|+ ++.++++.+.+|.|+++|+++++.+.++ -.... -..+++..+ ...+..-.++.+.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEE
Confidence 455556 45433 4789998 4667778888899999999999988887 32221 233555433 3333444678999
Q ss_pred EEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 119 IWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 119 iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
+||..+.+.+.++...... ..+ .++++.|+.+..+++|.++|..+.+.....
T Consensus 120 V~D~~Tl~~~~ti~~~~eG-wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I------------------------- 171 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGEG-WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAV------------------------- 171 (268)
T ss_dssp EEETTTTEEEEEEECSSCC-CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEE-------------------------
T ss_pred EEECCcCcEEEEEeCCCce-eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEE-------------------------
Confidence 9999999999998753322 233 356888888878999999999886644321
Q ss_pred EEeccC---CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecC-----------cCCCeEEEEEccCCCEEE
Q 000961 199 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRG-----------HMNNVSCVMFHAKQDIIV 264 (1208)
Q Consensus 199 ~~~~h~---~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~-----------h~~~V~~l~~sp~g~~l~ 264 (1208)
....+. ..++.+.|. +|...+....+..|.+.|..+++......+.+ .......|+|+|+++.|+
T Consensus 172 ~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf 250 (268)
T 3nok_A 172 QVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF 250 (268)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred EeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence 111111 245667776 66655555568899999999998744333321 123568899999776665
Q ss_pred EEeC
Q 000961 265 SNSE 268 (1208)
Q Consensus 265 sgs~ 268 (1208)
+.+.
T Consensus 251 VTGK 254 (268)
T 3nok_A 251 MTGK 254 (268)
T ss_dssp EEET
T ss_pred EeCC
Confidence 5543
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.0004 Score=81.64 Aligned_cols=153 Identities=10% Similarity=0.077 Sum_probs=100.1
Q ss_pred CEEEEEEeC-CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEEC-C---C-eEEEEECCCCe
Q 000961 11 RVKGLSFHS-KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGD-D---Y-KIKVWNYKMHR 84 (1208)
Q Consensus 11 ~V~~lafsp-dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~-D---g-~I~vWd~~~~~ 84 (1208)
....|+++| ++..|.++...+.|+.+|..++....... .......++|++++++|.++.. + . .+.+.+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 567899998 46667777665889999987766554443 4456789999999996655543 2 2 3333443 222
Q ss_pred EE--EEEccCCCCEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCEEEEEEeeCCCEEEEE-ECCCeE
Q 000961 85 CL--FTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTCISVLTG-HNHYVMCASFHPKEDLVVSA-SLDQTV 159 (1208)
Q Consensus 85 ~~--~~l~~h~~~I~~v~fs~-d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~-h~~~V~~l~~~p~~~~l~s~-s~Dg~V 159 (1208)
.. ..+. .......++++| ++..+++-..++.|..++..++........ .......++|+|++++|+.+ ...+.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11 2222 123456788999 666555555678999999987765333221 22456789999999955555 467889
Q ss_pred EEEECCC
Q 000961 160 RVWDIGA 166 (1208)
Q Consensus 160 ~vwdl~~ 166 (1208)
..++...
T Consensus 295 ~~~~~d~ 301 (430)
T 3tc9_A 295 LRSDYDW 301 (430)
T ss_dssp EEEEEET
T ss_pred EEEeCCc
Confidence 9988754
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.02 E-value=0.0022 Score=71.90 Aligned_cols=236 Identities=10% Similarity=0.020 Sum_probs=146.5
Q ss_pred CEEEEEecCCeEEEEECCCCe-EEEEecccccCEEEEEEEcCCCEEE-EEECCCeEEEEECCCCeE-EEEEccCCCCEEE
Q 000961 22 PWILASLHSGVIQLWDYRMGT-LIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDYKIKVWNYKMHRC-LFTLLGHLDYIRT 98 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~-~i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg~I~vWd~~~~~~-~~~l~~h~~~I~~ 98 (1208)
++|+.+. ...|+..|+.... .....-.......+++|++.+..|. +-...+.|..++...+.. ...+.........
T Consensus 5 p~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 5 PLLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp CEEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred cEEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 4565553 5679999987653 1111112233467899998655544 445678999999876532 1222223345667
Q ss_pred EEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC--CCeEEEEECCCCccccccCC
Q 000961 99 VQFHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL--DQTVRVWDIGALRKKTVSPA 175 (1208)
Q Consensus 99 v~fs~d~~~l~s~-s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~--Dg~V~vwdl~~~~~~~~~~~ 175 (1208)
+++.+.+..|+.+ ...+.|.+++...................+++.|.+..|+.+.. .+.|...++.+.....
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---- 159 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI---- 159 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE----
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE----
Confidence 8888755555544 45678999998754433333344566789999997767776663 5778888876522111
Q ss_pred CcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCcCCCeEEE
Q 000961 176 DDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVSCV 254 (1208)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l 254 (1208)
.....-..-+.++++|++..|..+. ..+.|..+++...... ....+.......+
T Consensus 160 -----------------------~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~--~~~~~~~~~P~gl 214 (318)
T 3sov_A 160 -----------------------IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ--AVVKGSLPHPFAL 214 (318)
T ss_dssp -----------------------EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSCCSCEEEE
T ss_pred -----------------------EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE--EEecCCCCCceEE
Confidence 1112223457899999766666654 5678999998765431 1223334556777
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeec
Q 000961 255 MFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRR 288 (1208)
Q Consensus 255 ~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~ 288 (1208)
++. .+.++.+-...+.|..++..+++....+..
T Consensus 215 av~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 215 TLF-EDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEe-CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 775 344555655678899999877776655543
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.01 E-value=0.0015 Score=69.99 Aligned_cols=212 Identities=12% Similarity=0.153 Sum_probs=134.7
Q ss_pred EecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 000961 46 RFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFTLL-GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123 (1208)
Q Consensus 46 ~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~l~-~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~ 123 (1208)
.+.+-...+.+++|+|++. ++++...++.|...|.. ++.+..+. +-......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556666799999999766 55557788999999988 88877763 223567889999988766665567889999876
Q ss_pred CCeE---EEEEe------cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccc
Q 000961 124 SRTC---ISVLT------GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDA 194 (1208)
Q Consensus 124 s~~~---i~~l~------~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1208)
.... +.... ..+.....++|+|.++.|+++.......+|.+.+.... ..+.+... .. +.
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~------~~l~i~~~-~~-~~---- 167 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS------NELHISKD-KA-LQ---- 167 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS------SCCEEEEC-HH-HH----
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC------Cceeeecc-hh-hc----
Confidence 5432 22222 13445689999999988888876666666665421000 00000000 00 00
Q ss_pred eEEEEEeccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeec-Cc------CCCeEEEEEccCCCEEEEE
Q 000961 195 VVKYVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTLR-GH------MNNVSCVMFHAKQDIIVSN 266 (1208)
Q Consensus 195 ~~~~~~~~h~~~V~~l~~sp~g-~~L~sgs~dg~I~iwd~~~~~~~~~~~l~-~h------~~~V~~l~~sp~g~~l~sg 266 (1208)
-..+...+..++++|.. .+++....++.+..+|.... ......+. +. ....-.|+|.++|++.++
T Consensus 168 -----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv- 240 (255)
T 3qqz_A 168 -----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV- 240 (255)
T ss_dssp -----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-
T ss_pred -----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-
Confidence 00123456889999964 45566666788888987755 43344444 21 125678999999985555
Q ss_pred eCCCcEEEEeC
Q 000961 267 SEDKSIRVWDV 277 (1208)
Q Consensus 267 s~dg~I~vwd~ 277 (1208)
++-+.++++.-
T Consensus 241 sE~n~~y~f~~ 251 (255)
T 3qqz_A 241 SEPNRFYRFTP 251 (255)
T ss_dssp ETTTEEEEEEC
T ss_pred cCCceEEEEEe
Confidence 67666666653
No 288
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.00 E-value=0.0048 Score=66.09 Aligned_cols=209 Identities=16% Similarity=0.191 Sum_probs=126.8
Q ss_pred EeecCcCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeeEEEeecC-CCCEEEEEEeCCCCEEEEEE-CCCeeeEee
Q 000961 242 DTLRGHMNNVSCVMFHAKQDII-VSNSEDKSIRVWDVTKRTGVQTFRRE-HDRFWILASHPEMNLLAAGH-DSGMIVFKL 318 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp~g~~l-~sgs~dg~I~vwd~~~~~~~~~~~~~-~~~i~~la~sp~~~~la~g~-~~gi~v~~l 318 (1208)
+.+.+-...++.++|+|++..| ++...++.|...|.. ++.+..+... ....-.|++.+++.++++.- ++.+.++.+
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4566777889999999976644 557788899999987 8887776532 35678888888887655432 222223322
Q ss_pred CCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 319 ERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 319 ~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
.. ++.+.. .....+..... ..+.....++|+|+++.+.++..... ..+|.+..
T Consensus 99 ~~----------------~~~i~~--------~~~~~~~~~~~-~~N~g~EGLA~d~~~~~L~va~E~~p--~~i~~~~g 151 (255)
T 3qqz_A 99 TP----------------NSEVKI--------LKKIKIPLQES-PTNCGFEGLAYSRQDHTFWFFKEKNP--IEVYKVNG 151 (255)
T ss_dssp CT----------------TCCEEE--------EEEEECCCSSC-CCSSCCEEEEEETTTTEEEEEEESSS--EEEEEEES
T ss_pred CC----------------CCeeee--------eeeeccccccc-cccCCcceEEEeCCCCEEEEEECcCC--ceEEEEcc
Confidence 21 111111 11111110000 11336799999999988888766443 45555542
Q ss_pred CCCCCCcccc-------cccCCceEEEEEEeC-CcEEEEEcCCCEEEEEecCCceeeeecCCc----------ceEEEEE
Q 000961 399 DSIGRGDSVQ-------DAKKGLGGSAIFIAR-NRFAVLDKSSNQVLVKNLKNEVVKKSILPI----------AADAIFY 460 (1208)
Q Consensus 399 ~~~~~~~~~~-------~~~~~~i~~~~fs~d-~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~~----------~v~~i~~ 460 (1208)
-......... ..+.....+++|.|. +++++.+...+.|.++|.+++.+..+.... ....|+|
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~ 231 (255)
T 3qqz_A 152 LLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAM 231 (255)
T ss_dssp TTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred cccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEE
Confidence 1111011011 112234678888876 467777777888999998887666655442 5688899
Q ss_pred eCCccEEEEe-CCeEEEEE
Q 000961 461 AGTGNLLCRA-EDRVVIFD 478 (1208)
Q Consensus 461 s~dg~~Las~-dg~v~lwd 478 (1208)
.++|++.+++ .+.++.|.
T Consensus 232 d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 232 DASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp CTTCCEEEEETTTEEEEEE
T ss_pred CCCCCEEEEcCCceEEEEE
Confidence 9998877776 45555554
No 289
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.99 E-value=3.4e-05 Score=98.69 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=118.4
Q ss_pred chHHHHHHHhCCChhhhhccccCcchh---hHHHH-hcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 613 GQAMIAYLQQKGFPEVALHFVKDERTR---FNLAL-ESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 613 ~~~i~~yl~~~g~~e~Al~~~~~~~~~---f~lal-~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
...++..+...|..|+|.++++..... .+..+ ..|+|++|.+++...+.+..|-.+|.+.+..|+++.|..+|.++
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 456778888999999999988765421 12233 68999999999999999999999999999999999999999999
Q ss_pred cCcch---hHHHHHhcCCHHHHHHHHHHHHHcC--------------------------------CchhhHHHHHhcCCH
Q 000961 689 KNFER---LSFLYLITGNMDKLSKMLKIAEVKN--------------------------------DVMGQFHNALYLGDV 733 (1208)
Q Consensus 689 ~d~~~---l~~l~~~~g~~~kl~k~~~~~~~~~--------------------------------~~~~~~~~al~lgd~ 733 (1208)
+|.+. +...+...|+.+.+.+....+.... +.......+...|++
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH
Confidence 87654 4555566666666554443322111 011122234446999
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHc
Q 000961 734 KERVKILESAGHLPLAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 734 ~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
++|..+|.+++.|..+..+.-..|..+.|.+.+...
T Consensus 1212 eeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1212 DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999988888888889898888888763
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.98 E-value=0.0011 Score=77.98 Aligned_cols=254 Identities=13% Similarity=0.128 Sum_probs=143.3
Q ss_pred CCEEEEEEeCC--CCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECC---Ce-EEEEECCCC
Q 000961 10 NRVKGLSFHSK--RPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDD---YK-IKVWNYKMH 83 (1208)
Q Consensus 10 ~~V~~lafspd--g~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~D---g~-I~vWd~~~~ 83 (1208)
....+++|+|+ +..|.++...+.|+.+|..+++..... .......+++|++++.++++.... .. +...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 34679999995 455666655588999998888766544 344558999999999955554321 22 333332211
Q ss_pred eE-EEEEccCCCCEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEE-e-cCCCCEEEEEEeeCCCEEEEEE-CCCe
Q 000961 84 RC-LFTLLGHLDYIRTVQFHH-EYPWIVSASDDQTIRIWNWQSRTCISVL-T-GHNHYVMCASFHPKEDLVVSAS-LDQT 158 (1208)
Q Consensus 84 ~~-~~~l~~h~~~I~~v~fs~-d~~~l~s~s~Dg~I~iwd~~s~~~i~~l-~-~h~~~V~~l~~~p~~~~l~s~s-~Dg~ 158 (1208)
.. ...+. .......++++| ++...++-..++.|+.+|..++.....+ . +.......++|+|+++.|+.+. ..+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 01111 233456688999 6655555556788999998877663332 2 1222335799999998665555 5678
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEE---------cCCCCEEEEEeCCCcEE
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAF---------HPTLPLIVSGADDRQVK 229 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~---------sp~g~~L~sgs~dg~I~ 229 (1208)
|+.++..........+ ..+. ...... +..+.. .....-..-..+++ .++|.+.++-...+.|+
T Consensus 297 I~~~~~d~~~~~~~~~--~~~a-g~~g~~--g~~dg~---~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVP--YIVC-GQHSSP--GWVDGM---GTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp EEEEEBCTTTCCBCCC--EEEE-ECTTCC--CCBCEE---GGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred EEEEeCCCCCcccCcE--EEEE-ecCCCC--ccCCCc---ccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 9998875321100000 0000 000000 000000 00001123556888 67777777666778888
Q ss_pred EEECCCCceeEEEeecCc------------------CCCeEEEEEc-cCCCEEEEEeCCCcEEEEeC
Q 000961 230 LWRMNETKAWEVDTLRGH------------------MNNVSCVMFH-AKQDIIVSNSEDKSIRVWDV 277 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~h------------------~~~V~~l~~s-p~g~~l~sgs~dg~I~vwd~ 277 (1208)
.++. ++. +.++.+. -.....++++ ++|.++++-..++.|+.+++
T Consensus 369 ~~~~-~G~---v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 369 VLTP-EGR---VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EECT-TSE---EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECC-CCC---EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 8885 343 2222221 2346788888 56666666666677777765
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.96 E-value=0.0024 Score=74.91 Aligned_cols=236 Identities=13% Similarity=0.105 Sum_probs=130.9
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC---C-cEEEEeCCC
Q 000961 206 GVNWAAFHPT--LPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED---K-SIRVWDVTK 279 (1208)
Q Consensus 206 ~V~~l~~sp~--g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d---g-~I~vwd~~~ 279 (1208)
....++|+|+ ...|.++...+.|+.++..++. +..+.........++++++|+++++.... . .+...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~---v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY---VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE---EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE---EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 3467899984 4455555544889999998777 44444455678999999999944444321 1 122222211
Q ss_pred Cee-EEEeecCCCCEEEEEEeC-CCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcc-eeeEee
Q 000961 280 RTG-VQTFRREHDRFWILASHP-EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKD-TQVIPI 356 (1208)
Q Consensus 280 ~~~-~~~~~~~~~~i~~la~sp-~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~-~~~~~~ 356 (1208)
+.. ...+. .......++++| ++.++++.. .++.|+.++..++.. ..+...
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~--------------------------~~~~V~~~d~~~g~~~~~~~~~ 269 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRY--------------------------HHAMISSYDPATGTLTEEEVMM 269 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBT--------------------------TCSEEEEECTTTCCEEEEEEEC
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEEC--------------------------CCCEEEEEECCCCeEEEEEecc
Confidence 110 00111 112234455555 343333221 345666777665544 222221
Q ss_pred cCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCC--CCCCcccc---------------cccCCceEEEE
Q 000961 357 RRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS--IGRGDSVQ---------------DAKKGLGGSAI 419 (1208)
Q Consensus 357 ~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~--~~~~~~~~---------------~~~~~~i~~~~ 419 (1208)
.. . . ....++|+|+++.+.++.. ..+.|..+++.... ..... .+ .........++
T Consensus 270 ~~--~-~---~~~~ia~dpdG~~LYvad~-~~~~I~~~~~d~~~~~~~~~~-~~ag~~g~~g~~dg~~~~a~~~~P~gia 341 (433)
T 4hw6_A 270 DT--K-G---SNFHIVWHPTGDWAYIIYN-GKHCIYRVDYNRETGKLAVPY-IVCGQHSSPGWVDGMGTGARLWGPNQGI 341 (433)
T ss_dssp SC--C-S---SCEEEEECTTSSEEEEEET-TTTEEEEEEBCTTTCCBCCCE-EEEECTTCCCCBCEEGGGSBCSSEEEEE
T ss_pred CC--C-C---CcccEEEeCCCCEEEEEeC-CCCEEEEEeCCCCCcccCcEE-EEEecCCCCccCCCcccceEEcCCccEE
Confidence 11 1 1 3457999999997766544 56688887765321 10000 00 01122356688
Q ss_pred E---------EeCCcEEEEEcCCCEEEEEecCCceeeeecCC-------------------cceEEEEEe-CCccEEEEe
Q 000961 420 F---------IARNRFAVLDKSSNQVLVKNLKNEVVKKSILP-------------------IAADAIFYA-GTGNLLCRA 470 (1208)
Q Consensus 420 f---------s~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~-------------------~~v~~i~~s-~dg~~Las~ 470 (1208)
+ .+++.+.++...++.|+.++.++. +.++.+. .....|+++ ++|.++++.
T Consensus 342 v~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 420 (433)
T 4hw6_A 342 FVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGD 420 (433)
T ss_dssp EEECGGGTTSSCCEEEEEEETTTTEEEEECTTSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred EEccccccccCCCCcEEEEECCCCEEEEECCCCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEe
Confidence 8 667788888888888999886653 3333211 136678888 567666663
Q ss_pred --CCeEEEEEcC
Q 000961 471 --EDRVVIFDLQ 480 (1208)
Q Consensus 471 --dg~v~lwdl~ 480 (1208)
++.|+.++++
T Consensus 421 ~~n~rIr~i~~e 432 (433)
T 4hw6_A 421 CDNHRVRKIAPE 432 (433)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCEEEEEecC
Confidence 4667766653
No 292
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.94 E-value=0.00096 Score=84.48 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=94.4
Q ss_pred CEEEEEEc-CCCCEEEEEEC-CC----cEEEEECCCC-eEEE-EEecCCCCEEEEEEeeCCCEEEEEECC-----CeEEE
Q 000961 95 YIRTVQFH-HEYPWIVSASD-DQ----TIRIWNWQSR-TCIS-VLTGHNHYVMCASFHPKEDLVVSASLD-----QTVRV 161 (1208)
Q Consensus 95 ~I~~v~fs-~d~~~l~s~s~-Dg----~I~iwd~~s~-~~i~-~l~~h~~~V~~l~~~p~~~~l~s~s~D-----g~V~v 161 (1208)
.+....|| |||++|+.+.. +| +|+++|+.++ +.+. .+.. ....+.|+|+++.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886543 23 5999999988 6321 1111 12357899999888877655 25777
Q ss_pred EECCCCccccccCCCcceeeccccccccccccceEEEEEe-ccCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc
Q 000961 162 WDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHPTLPLIVSGAD---DRQVKLWRMNETK 237 (1208)
Q Consensus 162 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~L~sgs~---dg~I~iwd~~~~~ 237 (1208)
+++.+..... ...+. ........+.|+|||++|+..+. ...|.++|+.++.
T Consensus 252 ~~lgt~~~~~-------------------------~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 252 HVMGKLQSED-------------------------VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp EETTSCGGGC-------------------------EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred EECCCCchhc-------------------------EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 7776532110 01111 22234567899999998887663 3468888987752
Q ss_pred eeE-EEee-cCcCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCC
Q 000961 238 AWE-VDTL-RGHMNNVSCVMFHAKQDIIVSNSED----KSIRVWDVTK 279 (1208)
Q Consensus 238 ~~~-~~~l-~~h~~~V~~l~~sp~g~~l~sgs~d----g~I~vwd~~~ 279 (1208)
... +..+ ........++.|+.++.+++....+ ..|..+|+.+
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 111 0222 2334555666655444444444333 2566677654
No 293
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.93 E-value=0.00019 Score=89.56 Aligned_cols=285 Identities=8% Similarity=0.009 Sum_probs=154.5
Q ss_pred EEEEEc-CCCEEEEEECCC-----------eEEEEECCCCeE--EEEEc-cCCCCEEEEEEcCCCCEEEEEEC-CCcEEE
Q 000961 56 GVHFHK-SQPLFVSGGDDY-----------KIKVWNYKMHRC--LFTLL-GHLDYIRTVQFHHEYPWIVSASD-DQTIRI 119 (1208)
Q Consensus 56 ~l~fsp-~~~~Lasgs~Dg-----------~I~vWd~~~~~~--~~~l~-~h~~~I~~v~fs~d~~~l~s~s~-Dg~I~i 119 (1208)
++++.+ ++++++.|+.+. .+.+||..+++. +..+. .+.....++++..++..+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887543 688999887653 22332 23334456788899998888884 568999
Q ss_pred EECCCCeEEEEEecCC-CCEEEEEEeeCCCEEEEEE-CC-----CeEEEEECCCCccccccCCC-cceeecccccccccc
Q 000961 120 WNWQSRTCISVLTGHN-HYVMCASFHPKEDLVVSAS-LD-----QTVRVWDIGALRKKTVSPAD-DILRLSQMNTDLFGG 191 (1208)
Q Consensus 120 wd~~s~~~i~~l~~h~-~~V~~l~~~p~~~~l~s~s-~D-----g~V~vwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (1208)
||..+++-...-..+. ..-.+++..++++.++.|+ .+ ..+.+||..+.+-....... ..+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~---------- 339 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT---------- 339 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC----------
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc----------
Confidence 9988775433222111 1123455667889999888 34 46899998775433211000 00000
Q ss_pred ccceEEEEEeccCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceeEEEeecCc-------CCCeEEEE
Q 000961 192 VDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGAD---------DRQVKLWRMNETKAWEVDTLRGH-------MNNVSCVM 255 (1208)
Q Consensus 192 ~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~---------dg~I~iwd~~~~~~~~~~~l~~h-------~~~V~~l~ 255 (1208)
..+. ..+..++..++.|+. ...+..||..+...+........ ...-.++.
T Consensus 340 ---------~~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 340 ---------ADKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp ---------CCTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred ---------cccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 0000 011123333333333 34577888887764322221111 11234555
Q ss_pred Ecc-CCCEEEEEeCCC-----------cEEEEeCCCCeeEEEe--ecCCCCE-EEEEEeCCCCEEEEEECCCeeeEeeCC
Q 000961 256 FHA-KQDIIVSNSEDK-----------SIRVWDVTKRTGVQTF--RREHDRF-WILASHPEMNLLAAGHDSGMIVFKLER 320 (1208)
Q Consensus 256 ~sp-~g~~l~sgs~dg-----------~I~vwd~~~~~~~~~~--~~~~~~i-~~la~sp~~~~la~g~~~gi~v~~l~~ 320 (1208)
|.. ++++++.|+.++ .|.+||..+....... ..+..+. .+.+..|+++++++|+.+.-.-|. .
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~--~ 483 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE--D 483 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC--C
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC--C
Confidence 543 677788887532 5788888776654433 2233333 345667899988887643111010 0
Q ss_pred CcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEE
Q 000961 321 ERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICS 384 (1208)
Q Consensus 321 ~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~ 384 (1208)
.. .-..+.+||..+.+-..+....... . ......+.|+|+.+++.+
T Consensus 484 ~~-------------~~~~v~~ydp~t~~W~~~~~~~~~R--~---~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 484 ST-------------PVFTPEIYVPEQDTFYKQNPNSIVR--V---YHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CS-------------BCCCCEEEEGGGTEEEECCCCSSCC--C---TTEEEEECTTSCEEEEEC
T ss_pred CC-------------cccceEEEcCCCCceeecCCCCCcc--c---cccHhhcCCCcEEEecCC
Confidence 00 1345778888775543322221111 1 233455678988555433
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.91 E-value=0.016 Score=65.11 Aligned_cols=280 Identities=9% Similarity=0.016 Sum_probs=141.9
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEe----cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCc
Q 000961 93 LDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLT----GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALR 168 (1208)
Q Consensus 93 ~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~----~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~ 168 (1208)
...+.+|.|.+++..++ ++.+|.|. .....++.-.... .....+.++.|++ +. ++.++..+.|.. ....++
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence 45789999988777666 45567653 3334343222221 1244688999986 44 444555665543 222222
Q ss_pred cccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcC
Q 000961 169 KKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHM 248 (1208)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~ 248 (1208)
.-.... ....+...+..+.+.+++..++++ .+|.|.. ..+.++.|.... .++.
T Consensus 110 tW~~~~------------------------~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~-~~~~ 162 (327)
T 2xbg_A 110 SWSQIP------------------------LDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV-QEAI 162 (327)
T ss_dssp SCEECC------------------------CCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE-CSCC
T ss_pred CceECc------------------------cccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee-cCCC
Confidence 111000 000122335566766666555544 4564422 233455554332 3455
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeC--CCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEE
Q 000961 249 NNVSCVMFHAKQDIIVSNSEDKSIRVWDV--TKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFA 326 (1208)
Q Consensus 249 ~~V~~l~~sp~g~~l~sgs~dg~I~vwd~--~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s 326 (1208)
..+..+.+.|++.+++++...+..+-+|- .+.+.+. ......+..+.+.+++.+++++.+ +.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~-G~------------- 226 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNG-GK------------- 226 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETT-TE-------------
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCC-ce-------------
Confidence 67899999999888776654443444442 2223321 233456888888888887766543 21
Q ss_pred ecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCCcc
Q 000961 327 VSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRGDS 406 (1208)
Q Consensus 327 ~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~~~ 406 (1208)
+.+.+...++.-.......... ...+..+.+.+++..+++ +. ++.+ ++..+.........
T Consensus 227 -------------~~~s~~D~G~tW~~~~~~~~~~---~~~~~~v~~~~~~~~~~~-g~--~g~i-~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 227 -------------IAFSDPDNSENWGELLSPLRRN---SVGFLDLAYRTPNEVWLA-GG--AGAL-LCSQDGGQTWQQDV 286 (327)
T ss_dssp -------------EEEEETTEEEEECCCBCTTSSC---CSCEEEEEESSSSCEEEE-ES--TTCE-EEESSTTSSCEECG
T ss_pred -------------EEEecCCCCCeeEeccCCcccC---CcceEEEEecCCCEEEEE-eC--CCeE-EEeCCCCcccEEcC
Confidence 2121111111111111110001 114678888887775444 22 3444 34444333322211
Q ss_pred cccccCCceEEEEEEeCCcEEEEEcCCCEEEEEec
Q 000961 407 VQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNL 441 (1208)
Q Consensus 407 ~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl 441 (1208)
........+.++.|.+++++++.+. +|.|.-++-
T Consensus 287 ~~~~~~~~~~~v~~~~~~~~~~~G~-~G~i~~~~~ 320 (327)
T 2xbg_A 287 DVKKVPSNFYKILFFSPDQGFILGQ-KGILLRYVT 320 (327)
T ss_dssp GGTTSSSCCCEEEEEETTEEEEECS-TTEEEEECC
T ss_pred ccCCCCCCeEEEEEECCCceEEEcC-CceEEEEcC
Confidence 1112234567888887777666655 787766653
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.0023 Score=75.02 Aligned_cols=153 Identities=13% Similarity=0.105 Sum_probs=96.0
Q ss_pred EEEEEEEc-CCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC-C----cEEEEECCCCeE
Q 000961 54 VRGVHFHK-SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD-Q----TIRIWNWQSRTC 127 (1208)
Q Consensus 54 V~~l~fsp-~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D-g----~I~iwd~~s~~~ 127 (1208)
...|+|+| ++..|.++...+.|..+|..++.... +.........++|++++++|+++... + .+...+.. +..
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 47899998 45556555555889999998766444 33355678999999999977776652 1 23334432 211
Q ss_pred E--EEEecCCCCEEEEEEee-CCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccC
Q 000961 128 I--SVLTGHNHYVMCASFHP-KEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD 204 (1208)
Q Consensus 128 i--~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 204 (1208)
. ..+.. ......++++| ++.++++-..++.|..++..+..... ....+..
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--------------------------~~~~~~~ 269 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--------------------------LFTIQDS 269 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--------------------------EEECSSS
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------EEEcCCC
Confidence 1 22221 23356788999 66656565567889999987533210 0111112
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 000961 205 RGVNWAAFHPTLPLIVS-GADDRQVKLWRMNE 235 (1208)
Q Consensus 205 ~~V~~l~~sp~g~~L~s-gs~dg~I~iwd~~~ 235 (1208)
..-..++|+|+|++|.+ -...+.|..++...
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 34578999999995544 45678899987664
No 296
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.87 E-value=0.0049 Score=70.04 Aligned_cols=201 Identities=10% Similarity=-0.002 Sum_probs=126.3
Q ss_pred CCEEEEEEeCCCCEEEEEe-cCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEE-EEEECCCeEEEEECCCCeEEE
Q 000961 10 NRVKGLSFHSKRPWILASL-HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~-~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~~~~~~~ 87 (1208)
..+.+++|++.+..|..+. ..+.|..++...+.....+........++++.+.+..| ++-...+.|.+.+........
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4578999998766666554 56889999987655444333333445789999865544 555567899999987544333
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEEC-C-CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEEC
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASD-D-QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDI 164 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~-D-g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl 164 (1208)
.+.........+++.|.+..|+.+.. . +.|...++............-.....++++|++..|+.+. ..+.|..+|+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 232 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 34444567899999997766665544 3 6788888764433222233345678999998777666665 4578999998
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
.+..... ...........+++. .+.++++-...+.|..++..+++.
T Consensus 233 dG~~~~~---------------------------~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 233 DGSHRKA---------------------------VISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp TSCSCEE---------------------------EECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCceEE---------------------------EEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence 6532211 111122334556663 344555555667777777555543
No 297
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.86 E-value=0.015 Score=64.91 Aligned_cols=204 Identities=8% Similarity=-0.089 Sum_probs=125.3
Q ss_pred CCCEEEEEEeCCCCEEEEEe-cCCeEEEEECCC---CeE-EEEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCC
Q 000961 9 SNRVKGLSFHSKRPWILASL-HSGVIQLWDYRM---GTL-IDRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKM 82 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~-~dg~I~iWd~~~---g~~-i~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~ 82 (1208)
-..+.+++|++++..|..+. .++.|..++... +.. ...+...-....++++++.+. +.++-...+.|.+.+...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34577999999776666554 468999999865 122 222322223457899997555 445556678999999875
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEECC--CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeE
Q 000961 83 HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD--QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTV 159 (1208)
Q Consensus 83 ~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D--g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V 159 (1208)
......+.........+++.|.+.+|+.+... +.|...++............-.....++++|++..|+.+. ..+.|
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I 188 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence 43333333345678999999977777666543 6788888764333222233345688999999877776665 45689
Q ss_pred EEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 160 RVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 160 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
..+|+.+...... ............+++. .+.++++-...+.|..++..+++.
T Consensus 189 ~~~d~dg~~~~~~-------------------------~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 189 SSIDVNGGNRKTI-------------------------LEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEETTSCSCEEE-------------------------EECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEecCCCceEEE-------------------------eecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 9999875322110 0000112234566664 345555555677888888766553
No 298
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.80 E-value=0.0051 Score=71.02 Aligned_cols=202 Identities=10% Similarity=0.004 Sum_probs=128.5
Q ss_pred CCCEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEE-EEEECCCeEEEEECCCCeEE
Q 000961 9 SNRVKGLSFHSKRPWILAS-LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLF-VSGGDDYKIKVWNYKMHRCL 86 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg-~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~L-asgs~Dg~I~vWd~~~~~~~ 86 (1208)
...+.+++|++.+..|..+ ...+.|..++...+.....+.........+++++.+..| ++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3467889999866666555 456889999987665444343333345789999865544 45556678999988754433
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEEC-C-CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEE
Q 000961 87 FTLLGHLDYIRTVQFHHEYPWIVSASD-D-QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWD 163 (1208)
Q Consensus 87 ~~l~~h~~~I~~v~fs~d~~~l~s~s~-D-g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwd 163 (1208)
..+.........+++.|.+.+|+.+.. . +.|...++............-.....++|+|++..|+.+. ..+.|..+|
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 334444567899999997776666654 3 6788888765443333333445678999998777666665 457788888
Q ss_pred CCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 164 IGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
+.+..... ...........+++. .+.++++-...+.|..++..+++.
T Consensus 275 ~dG~~~~~---------------------------~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 275 LDGSHRKA---------------------------VISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp TTSCSCEE---------------------------EECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCeeEE---------------------------EEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcc
Confidence 76532211 111122344566663 344555555677888888555554
No 299
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.79 E-value=0.021 Score=66.20 Aligned_cols=205 Identities=8% Similarity=-0.083 Sum_probs=130.2
Q ss_pred CCCCEEEEEEeCCCCEEEEEe-cCCeEEEEECCCC----eEEEEecccccCEEEEEEEcC-CCEEEEEECCCeEEEEECC
Q 000961 8 KSNRVKGLSFHSKRPWILASL-HSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHKS-QPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~-~dg~I~iWd~~~g----~~i~~l~~h~~~V~~l~fsp~-~~~Lasgs~Dg~I~vWd~~ 81 (1208)
.-..+.+++|++.+..|..+. .++.|+.+++... .....+........++++.+. +.+.++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 446788999999766666554 5688999987652 223333334456789999985 4455555567899999987
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCe
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQT 158 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~ 158 (1208)
.......+.........+++.|.+.+|+.+.. .+.|...++............-.....++++|++..|+.+. ..+.
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 65544444445566899999997777776653 36888888875444333444446788999999887777765 4578
Q ss_pred EEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 159 VRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 159 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
|..+|+.+...... ......-.....+++. .+.++++-...+.|..++..+++.
T Consensus 270 I~~~d~dG~~~~~~-------------------------~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 270 ISSIDVNGGNRKTI-------------------------LEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEEETTSCCCEEE-------------------------EECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEEEeCCCCccEEE-------------------------EeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 99999876332110 0001112234456663 234555555667888888666654
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=0.0058 Score=71.89 Aligned_cols=260 Identities=12% Similarity=0.100 Sum_probs=141.7
Q ss_pred CEEEEEEeC-CCCEEEEEe-cCCeEEEEECCCCeEEEEeccc---ccCEEEEEE-------EcCCCEEEEEECCC-----
Q 000961 11 RVKGLSFHS-KRPWILASL-HSGVIQLWDYRMGTLIDRFDEH---DGPVRGVHF-------HKSQPLFVSGGDDY----- 73 (1208)
Q Consensus 11 ~V~~lafsp-dg~~Lasg~-~dg~I~iWd~~~g~~i~~l~~h---~~~V~~l~f-------sp~~~~Lasgs~Dg----- 73 (1208)
....|+|+| ++..|.++. ..+.|++.|..++.+....... -.....++| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467999999 355555554 3467999998887766554332 235799999 99999666665543
Q ss_pred --eEEEEECCC-CeEE-----EEEccCCCCEEEEEEcCCCCE-EEEEECCCcEEEEECC-------CCeE----------
Q 000961 74 --KIKVWNYKM-HRCL-----FTLLGHLDYIRTVQFHHEYPW-IVSASDDQTIRIWNWQ-------SRTC---------- 127 (1208)
Q Consensus 74 --~I~vWd~~~-~~~~-----~~l~~h~~~I~~v~fs~d~~~-l~s~s~Dg~I~iwd~~-------s~~~---------- 127 (1208)
.|.+.+... +... ..+... .....++++|++.. +++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366665333 1221 122111 12346788995554 4455567789999987 5543
Q ss_pred -EEE-Ee-cCCCCEEEEEEeeCCCEEEEE-ECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc
Q 000961 128 -ISV-LT-GHNHYVMCASFHPKEDLVVSA-SLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (1208)
Q Consensus 128 -i~~-l~-~h~~~V~~l~~~p~~~~l~s~-s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 203 (1208)
... +. +.......++|+|+++.|+.+ +....|+.++..........+ ..+. ..... .+..++. .....
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~--~~~a-G~~g~--~G~~DG~---~~~a~ 370 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP--YNFV-GGYKQ--SGYRDDV---GTEAR 370 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC--EEEE-EBTTB--CCCBCCB---GGGCB
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc--EEec-CCCCC--CcccCCc---ccccc
Confidence 112 21 223456899999999965555 456788887654321100000 0000 00000 0000000 00000
Q ss_pred CCCeE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCceeEEEeecCc------------------------CCCe
Q 000961 204 DRGVN-WAAFH-------PTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGH------------------------MNNV 251 (1208)
Q Consensus 204 ~~~V~-~l~~s-------p~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h------------------------~~~V 251 (1208)
-..-. .++.. +++.++++=...+.|+.++. ++. +.++-+. -...
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~---v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI---VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB---EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC---EEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 01122 33443 45666666666778888883 443 3333211 2346
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeE
Q 000961 252 SCVMFHAK-QDIIVSNSEDKSIRVWDVTKRTGV 283 (1208)
Q Consensus 252 ~~l~~sp~-g~~l~sgs~dg~I~vwd~~~~~~~ 283 (1208)
..|+++++ +.++++=+.+..||.+++.....+
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred cEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 78888886 666666666778888887654443
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.67 E-value=0.021 Score=71.81 Aligned_cols=236 Identities=5% Similarity=-0.065 Sum_probs=146.6
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEE-EEECCCeEEEEECCCC----eEEEEEccCCCCE
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDYKIKVWNYKMH----RCLFTLLGHLDYI 96 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg~I~vWd~~~~----~~~~~l~~h~~~I 96 (1208)
.+|+.+. ...|+..++.......... ....+.+|+|++....|. +-...+.|+.+++... .....+.......
T Consensus 396 p~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 396 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CEEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 3555553 4568888876655444333 445678999998655544 4456688999998753 2233333345567
Q ss_pred EEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC--CeEEEEECCCCcccccc
Q 000961 97 RTVQFHHEYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD--QTVRVWDIGALRKKTVS 173 (1208)
Q Consensus 97 ~~v~fs~d~~~l~s~-s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D--g~V~vwdl~~~~~~~~~ 173 (1208)
..|++.+.+..|+.+ ...+.|.+.++........+.........|+++|.+..|+.+... +.|.+.++.+.....
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~-- 551 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-- 551 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--
Confidence 789998877666555 456899999987665544444455668999999987677766532 678888876533211
Q ss_pred CCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeecCcCCCeE
Q 000961 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVS 252 (1208)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~~V~ 252 (1208)
.....-...+.|++++.+..|+.+. ..+.|...++.......+..-...-....
T Consensus 552 -------------------------lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~ 606 (791)
T 3m0c_C 552 -------------------------LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF 606 (791)
T ss_dssp -------------------------EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred -------------------------EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCC
Confidence 2222334678899998777666664 45679999987766432322222233455
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEee
Q 000961 253 CVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFR 287 (1208)
Q Consensus 253 ~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~ 287 (1208)
+|++.. +.++++-...+.|...|..+++.+..+.
T Consensus 607 glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 607 SLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 666643 3444455556778888877776665554
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.62 E-value=0.094 Score=57.10 Aligned_cols=234 Identities=10% Similarity=0.159 Sum_probs=149.3
Q ss_pred CeEEEEECCCCeEEEEe-cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE
Q 000961 31 GVIQLWDYRMGTLIDRF-DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIV 109 (1208)
Q Consensus 31 g~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~ 109 (1208)
..|.|-|+.++..+.+- -.-+ +.-.||..+.+|.-. ..++.|+|++++..+....- ...|.-=.|-.+. .|+
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~ 121 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 121 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEE
T ss_pred CEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEE
Confidence 37888888776544222 1222 233589998888766 57999999999999888774 4567666776655 344
Q ss_pred EEECCCcEEEEECCC-CeEEEEEecC----CCCEEEEEEeeCCCEEEEEEC-------CCeEEEEECCCCccccccCCCc
Q 000961 110 SASDDQTIRIWNWQS-RTCISVLTGH----NHYVMCASFHPKEDLVVSASL-------DQTVRVWDIGALRKKTVSPADD 177 (1208)
Q Consensus 110 s~s~Dg~I~iwd~~s-~~~i~~l~~h----~~~V~~l~~~p~~~~l~s~s~-------Dg~V~vwdl~~~~~~~~~~~~~ 177 (1208)
..+ +..|+-|++.. ..+...+..| +..|..-..+++.++++..+- .|.+.+|..+...
T Consensus 122 lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~--------- 191 (365)
T 2xzh_A 122 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--------- 191 (365)
T ss_dssp EEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE---------
T ss_pred EEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc---------
Confidence 444 46899999974 4566666544 356777778888887776542 3567777765532
Q ss_pred ceeeccccccccccccceEEEEEeccCCCeEEEEEcCC---CCEEEEEeC---CCcEEEEECCCC---c-ee---EEEee
Q 000961 178 ILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPT---LPLIVSGAD---DRQVKLWRMNET---K-AW---EVDTL 244 (1208)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---g~~L~sgs~---dg~I~iwd~~~~---~-~~---~~~~l 244 (1208)
...++||......+....+ ..+++.+.. .+.+++.++... . .. .+..+
T Consensus 192 -------------------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~ 252 (365)
T 2xzh_A 192 -------------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 252 (365)
T ss_dssp -------------------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEEC
T ss_pred -------------------cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceee
Confidence 2245555433322222111 112333322 257888887443 1 10 01111
Q ss_pred c---CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeC
Q 000961 245 R---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP 300 (1208)
Q Consensus 245 ~---~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp 300 (1208)
. ...+-..++..++.-..+..-+.-|.|++||+.++.++..-+...+.|...+.+.
T Consensus 253 fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~ 311 (365)
T 2xzh_A 253 FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE 311 (365)
T ss_dssp CCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEG
T ss_pred CCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccC
Confidence 1 1244566888899889999999999999999999999998887777766555443
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.56 E-value=0.041 Score=64.67 Aligned_cols=244 Identities=10% Similarity=0.070 Sum_probs=130.9
Q ss_pred CeEEEEEcCC-C-CEEEEEeCCCcEEEEECCCCceeEEEeec-CcCCCeEEEEE-------ccCCCEEEEEeCCC-c---
Q 000961 206 GVNWAAFHPT-L-PLIVSGADDRQVKLWRMNETKAWEVDTLR-GHMNNVSCVMF-------HAKQDIIVSNSEDK-S--- 271 (1208)
Q Consensus 206 ~V~~l~~sp~-g-~~L~sgs~dg~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~~-------sp~g~~l~sgs~dg-~--- 271 (1208)
....++|+|. . +++++-...+.|++.|..++....+.... ........++| ++++.+|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 4 44444444577899999887743222211 12335889999 99999666665543 2
Q ss_pred ---EEEEeCCC-CeeE-----EEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEE--eCCeE
Q 000961 272 ---IRVWDVTK-RTGV-----QTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYA--KDRFL 340 (1208)
Q Consensus 272 ---I~vwd~~~-~~~~-----~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~--~d~~i 340 (1208)
|.+++... +... ..+.. ......++.+|++ ..|+++ ..+.|
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~---------------------------g~LYvtd~~~g~V 271 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPIN---------------------------GELYFNSYEKGQV 271 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTT---------------------------CCEEEEETTTTEE
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCC---------------------------CeEEEEECCCCEE
Confidence 55555332 1110 11111 1122344445532 233333 46678
Q ss_pred EEEEcc-------CCcc-----------e-eeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC
Q 000961 341 RYYEFS-------TQKD-----------T-QVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI 401 (1208)
Q Consensus 341 ~v~d~~-------~~~~-----------~-~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~ 401 (1208)
..+|+. ++.. . .+..... + . .+..++|+|+|+.+.++. .....|+.++......
T Consensus 272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~-~--~---~p~~ia~~p~G~~lYvaD-~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD-P--S---WEFQIFIHPTGKYAYFGV-INNHYFMRSDYDEIKK 344 (496)
T ss_dssp EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS-S--S---CCEEEEECTTSSEEEEEE-TTTTEEEEEEEETTTT
T ss_pred EEEecccccccccCceeecccccccccccceeEecCC-C--C---CceEEEEcCCCCEEEEEe-CCCCEEEEEecCCCcc
Confidence 888887 4443 0 1222211 1 2 678999999999666554 4667887766554210
Q ss_pred --C--CCcc-c-----------ccccCCceEEEEEE--------eCCcEEEEEcCCCEEEEEecCCceeeeecCC-----
Q 000961 402 --G--RGDS-V-----------QDAKKGLGGSAIFI--------ARNRFAVLDKSSNQVLVKNLKNEVVKKSILP----- 452 (1208)
Q Consensus 402 --~--~~~~-~-----------~~~~~~~i~~~~fs--------~d~~~l~~~~~dg~I~Iwdl~~~~~~~l~~~----- 452 (1208)
. .... . ...........++. +++.++++...++.|+.++.++ .+.++.+.
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~v~TiaG~g~~~~ 423 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-IVSTYAGRGASTS 423 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-BEEEEEESCTTHH
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-CEEEEeccccccc
Confidence 0 0000 0 00111223323444 4567888888788888888555 33333211
Q ss_pred --------------------cceEEEEEeCC-ccEEEEe--CCeEEEEEcCCCeEE
Q 000961 453 --------------------IAADAIFYAGT-GNLLCRA--EDRVVIFDLQQRLVL 485 (1208)
Q Consensus 453 --------------------~~v~~i~~s~d-g~~Las~--dg~v~lwdl~~~~~l 485 (1208)
.....|+++++ |.++++. +..|+.++++....+
T Consensus 424 ~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 424 LADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp HHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred ccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 03566777775 6666653 466777766554433
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.53 E-value=0.025 Score=64.21 Aligned_cols=237 Identities=14% Similarity=0.088 Sum_probs=124.4
Q ss_pred CEEEEEEEcCCCEEEEEECCCeEEEEECCCCeE--EEEEc---cCCCCEEEEEEcCC---CCEEEEEECC------CcEE
Q 000961 53 PVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRC--LFTLL---GHLDYIRTVQFHHE---YPWIVSASDD------QTIR 118 (1208)
Q Consensus 53 ~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~--~~~l~---~h~~~I~~v~fs~d---~~~l~s~s~D------g~I~ 118 (1208)
.-..++|.|+|+++++ ..+|.|.+++ +++. +..+. ........++|+|+ +.+|+.+... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4578999999996655 5569999998 4442 22221 12356889999998 5566555432 5788
Q ss_pred EEECCCCe-----EE-EEEe---cCCCCEEEEEEeeCCCEEEEEECC-------------CeEEEEECCCCccccccCCC
Q 000961 119 IWNWQSRT-----CI-SVLT---GHNHYVMCASFHPKEDLVVSASLD-------------QTVRVWDIGALRKKTVSPAD 176 (1208)
Q Consensus 119 iwd~~s~~-----~i-~~l~---~h~~~V~~l~~~p~~~~l~s~s~D-------------g~V~vwdl~~~~~~~~~~~~ 176 (1208)
.|+...+. .+ ..+. +..+....++|.|+|.+.++.+.. |.|..++..+. . +..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~----p~~ 183 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-P----APG 183 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-B----CTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-C----CCC
Confidence 88876431 11 1233 122344689999999766654321 34444443320 0 000
Q ss_pred cceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCCcE------EEEECCCCce-----------
Q 000961 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDRQV------KLWRMNETKA----------- 238 (1208)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg~I------~iwd~~~~~~----------- 238 (1208)
+. ..+...........++ .....++|+| ++.++++-...+.+ .+..+..+..
T Consensus 184 --------np-f~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~ 253 (352)
T 2ism_A 184 --------NP-FLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGN 253 (352)
T ss_dssp --------CT-TTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCC
T ss_pred --------Cc-ccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCC
Confidence 00 0000000001112233 3356688999 66655554333321 1222222210
Q ss_pred -----eEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee------EEEeecCCCCEEEEEEeCCCCEEEE
Q 000961 239 -----WEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG------VQTFRREHDRFWILASHPEMNLLAA 307 (1208)
Q Consensus 239 -----~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~------~~~~~~~~~~i~~la~sp~~~~la~ 307 (1208)
.++..+ .+......++| .+|.++++....+.|...++..... ...+-....++..+++.|||.++++
T Consensus 254 ~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 254 DPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp CTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEE
T ss_pred CCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEE
Confidence 012222 22234567777 4677666666667777777653321 1222233467899999999987776
Q ss_pred EE
Q 000961 308 GH 309 (1208)
Q Consensus 308 g~ 309 (1208)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 305
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.52 E-value=0.00012 Score=84.09 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCc
Q 000961 645 ESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF 691 (1208)
Q Consensus 645 ~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~ 691 (1208)
.+|++++|.+++...+++.+|..||+.++.+|+++.|+++|.++.|+
T Consensus 15 ~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~ 61 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP 61 (449)
T ss_dssp -----------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH
Confidence 46778888888888888888888888888888888888888877664
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.47 E-value=0.19 Score=56.90 Aligned_cols=236 Identities=10% Similarity=0.150 Sum_probs=149.4
Q ss_pred CCeEEEEECCCCeEEEEe-cccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEE
Q 000961 30 SGVIQLWDYRMGTLIDRF-DEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWI 108 (1208)
Q Consensus 30 dg~I~iWd~~~g~~i~~l-~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l 108 (1208)
+..|.|-|+.++..+.+- -.-+ +.-.||..+.+|.=. ..++.|+|+++...+....-.. .|.-=.|-.+. .|
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l 119 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TV 119 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EE
T ss_pred CCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eE
Confidence 347888888776544222 1122 344688888777765 5799999999999988877444 45455555444 34
Q ss_pred EEEECCCcEEEEECCC-CeEEEEEecC----CCCEEEEEEeeCCCEEEEEEC-------CCeEEEEECCCCccccccCCC
Q 000961 109 VSASDDQTIRIWNWQS-RTCISVLTGH----NHYVMCASFHPKEDLVVSASL-------DQTVRVWDIGALRKKTVSPAD 176 (1208)
Q Consensus 109 ~s~s~Dg~I~iwd~~s-~~~i~~l~~h----~~~V~~l~~~p~~~~l~s~s~-------Dg~V~vwdl~~~~~~~~~~~~ 176 (1208)
+..+ +..|+-|++.. ..++..+..| +..|..-..+++.++++..+- .|.+.+|+.+....
T Consensus 120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s------- 191 (494)
T 1bpo_A 120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------- 191 (494)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-------
T ss_pred EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-------
Confidence 4443 56899999974 3566666544 356777888888888775542 36677887765332
Q ss_pred cceeeccccccccccccceEEEEEeccCCCeEEEEEcCCC---CEEEEEeC---CCcEEEEECCCC----cee---EEEe
Q 000961 177 DILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTL---PLIVSGAD---DRQVKLWRMNET----KAW---EVDT 243 (1208)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g---~~L~sgs~---dg~I~iwd~~~~----~~~---~~~~ 243 (1208)
..++||......+....+. .+++.+.. .+.+++.++... ... .+..
T Consensus 192 ---------------------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv 250 (494)
T 1bpo_A 192 ---------------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV 250 (494)
T ss_dssp ---------------------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEEC
T ss_pred ---------------------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeee
Confidence 2455554433322222111 13333332 268888888543 010 0111
Q ss_pred ec---CcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCC
Q 000961 244 LR---GHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHPE 301 (1208)
Q Consensus 244 l~---~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~ 301 (1208)
.. ...+-..++..++....+..-+.-|.|++||+.++.++..-+...+.|...+.+..
T Consensus 251 ~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~ 311 (494)
T 1bpo_A 251 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA 311 (494)
T ss_dssp CCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred eCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCC
Confidence 11 12345668899999999999999999999999999999888777776655554443
No 307
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.43 E-value=0.03 Score=62.51 Aligned_cols=200 Identities=9% Similarity=0.013 Sum_probs=124.6
Q ss_pred CEEEEEEeCCCCEEEEE-ecCCeEEEEECCCCeEE-EEecccccCEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEE
Q 000961 11 RVKGLSFHSKRPWILAS-LHSGVIQLWDYRMGTLI-DRFDEHDGPVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLF 87 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg-~~dg~I~iWd~~~g~~i-~~l~~h~~~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~ 87 (1208)
.+.+++|++.+..|..+ ..++.|..++...+... ..+...-....++++.+.+. ++++-...+.|.+++........
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 46688999865555554 45678999998765321 12222223457899997554 44555567899999987543333
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEEC
Q 000961 88 TLLGHLDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDI 164 (1208)
Q Consensus 88 ~l~~h~~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl 164 (1208)
.+.........+++.|.+.+|+.+.. .+.|...++............-.....++++|++..|+.+. ..+.|..+|+
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 33345567899999997777776663 57888888764333223333345678999999777666665 4678999998
Q ss_pred CCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 000961 165 GALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 238 (1208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~ 238 (1208)
.+..... ...+.......+++.. +.++.+-...+.|..++..+++.
T Consensus 196 dG~~~~~---------------------------~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 196 DGTNRQA---------------------------VVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TSCSCEE---------------------------EECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCceEE---------------------------EecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 7532211 1111223345566653 34555555677888888866654
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.43 E-value=0.063 Score=58.41 Aligned_cols=243 Identities=9% Similarity=0.075 Sum_probs=146.4
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCC-CeEEEEEccC
Q 000961 14 GLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKM-HRCLFTLLGH 92 (1208)
Q Consensus 14 ~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~-~~~~~~l~~h 92 (1208)
+.-.||..+.+|.-. ..+++|+|+++.+.++.+.- ..+|.-=.|-.+. .|+..+. ..|+-|++.. ..+...+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT~-taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEES-SEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEcC-CcEEEEcccCCCCCceeeecc
Confidence 345689888888775 78999999999999888764 4567777775544 4444443 4899999974 3455555544
Q ss_pred C----CCEEEEEEcCCCCEEEEEEC-------CCcEEEEECCCCeEEEEEecCCCCEEEEEEe--eCC-CEEEEEEC---
Q 000961 93 L----DYIRTVQFHHEYPWIVSASD-------DQTIRIWNWQSRTCISVLTGHNHYVMCASFH--PKE-DLVVSASL--- 155 (1208)
Q Consensus 93 ~----~~I~~v~fs~d~~~l~s~s~-------Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~--p~~-~~l~s~s~--- 155 (1208)
. ..|..-..+++.+|++..+- .|.+.+|..+. +..+.+.||......+... +.. +++..+..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 46777888899998876543 36788999764 4456777775433222221 111 23343333
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~ 235 (1208)
.+.+++-++........ + +.. ...++ .+.-+....--.++..++....+..-+.-|.|++||+.+
T Consensus 226 g~kLhIiEi~~~~~~~~-~----f~k--k~vdi--------~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleT 290 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQ-P----FPK--KAVDV--------FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 290 (365)
T ss_dssp EEEEEEEECSSCCTTCC-C----CCC--EEEEE--------CCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred CcEEEEEEcCCCCCCCC-C----ccc--cccee--------eCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEccc
Confidence 25888988854310000 0 000 00000 001111233445788888888999999999999999999
Q ss_pred CceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 000961 236 TKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVT 278 (1208)
Q Consensus 236 ~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~ 278 (1208)
+.+ +..-+-...+|..-+.+....=++.....|.|.--.+.
T Consensus 291 gt~--i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 291 GTC--IYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp CCE--EEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred CcE--EEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 998 54444444555444444333334444455554444333
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.33 E-value=0.00029 Score=88.18 Aligned_cols=240 Identities=4% Similarity=-0.091 Sum_probs=136.5
Q ss_pred cCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEE-ECCCeEEEEECCC----CeEEEEEccCCCCEEEEEEcC
Q 000961 29 HSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSG-GDDYKIKVWNYKM----HRCLFTLLGHLDYIRTVQFHH 103 (1208)
Q Consensus 29 ~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasg-s~Dg~I~vWd~~~----~~~~~~l~~h~~~I~~v~fs~ 103 (1208)
..+.|+..++.+......+... ..+.+++|++.+..|..+ ...+.|..+++.. ......+.........+++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 3457888888776655444333 346789999977666655 4567899999875 222222211222345678875
Q ss_pred CCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEEC-C-CeEEEEECCCCccccccCCCccee
Q 000961 104 EYPWIVSA-SDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASL-D-QTVRVWDIGALRKKTVSPADDILR 180 (1208)
Q Consensus 104 d~~~l~s~-s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~-D-g~V~vwdl~~~~~~~~~~~~~~~~ 180 (1208)
.+..|+.+ ...+.|.++++........+.........++++|.+.+|+.+.. . +.|.++++.+.....
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--------- 533 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--------- 533 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE---------
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE---------
Confidence 54444443 45678999998765444333333345677888887655555442 2 567666665422110
Q ss_pred eccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccC
Q 000961 181 LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAK 259 (1208)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sg-s~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~ 259 (1208)
.....-...+.++|+|++..|+.+ +..+.|..+++.......+............+++..+
T Consensus 534 ------------------l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~ 595 (699)
T 1n7d_A 534 ------------------LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 595 (699)
T ss_dssp ------------------ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT
T ss_pred ------------------EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC
Confidence 011112334578999876555444 4567899999876543222221122233445666543
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEeecCCCCEEEEE
Q 000961 260 QDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILA 297 (1208)
Q Consensus 260 g~~l~sgs~dg~I~vwd~~~~~~~~~~~~~~~~i~~la 297 (1208)
.++++....+.|..++..+++.+..+.......+.|+
T Consensus 596 -~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 596 -KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp -EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred -EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 4455555678899999888887776654333333333
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.29 E-value=0.062 Score=60.92 Aligned_cols=244 Identities=14% Similarity=0.082 Sum_probs=123.3
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeE--EEEec---ccccCEEEEEEEcC---CCEEEEE-ECC-----Ce
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL--IDRFD---EHDGPVRGVHFHKS---QPLFVSG-GDD-----YK 74 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~--i~~l~---~h~~~V~~l~fsp~---~~~Lasg-s~D-----g~ 74 (1208)
-....+++|.|+|.+++ +...|.|.+++ +++. +..+. ........|+|+|+ +..|.++ ... +.
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34578999999998555 45679999998 4542 22221 22456789999998 4444443 332 67
Q ss_pred EEEEECCCCe-----EEE-EEc---cCCCCEEEEEEcCCCCEEEEEEC-------------CCcEEEEECCCC-------
Q 000961 75 IKVWNYKMHR-----CLF-TLL---GHLDYIRTVQFHHEYPWIVSASD-------------DQTIRIWNWQSR------- 125 (1208)
Q Consensus 75 I~vWd~~~~~-----~~~-~l~---~h~~~I~~v~fs~d~~~l~s~s~-------------Dg~I~iwd~~s~------- 125 (1208)
|..|+...+. .+. .+. +.......++|.|||.+.++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876431 222 233 11123468999999975555432 145655665430
Q ss_pred ------eEEEEEecCCCCEEEEEEee-CCCEEEEEECCCeE------EEEECCCCccccccCCCcceeeccccccccccc
Q 000961 126 ------TCISVLTGHNHYVMCASFHP-KEDLVVSASLDQTV------RVWDIGALRKKTVSPADDILRLSQMNTDLFGGV 192 (1208)
Q Consensus 126 ------~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg~V------~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1208)
.......+| .....++|+| ++.+.++-.....+ .+.-+..+..... +. .. ......+.
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGw-p~---~~---g~~~~~~~- 257 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGW-PR---VV---GRGNDPRY- 257 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCT-TT---CC---SCCCCTTS-
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCC-Cc---cc---CCCCCCCC-
Confidence 111111233 2356788999 55554443333321 1221111110000 00 00 00000000
Q ss_pred cceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eEEEeecCcCCCeEEEEEccCCCEEEEEe
Q 000961 193 DAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA----WEVDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (1208)
Q Consensus 193 ~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~----~~~~~l~~h~~~V~~l~~sp~g~~l~sgs 267 (1208)
......+ .+......++| .+|.++++....+.|...++..... .....+......+..+++.|+|.+.++..
T Consensus 258 -~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 258 -RDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -CCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred -cCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 0011112 22234556677 4566666655667777777654331 11122212246789999999998777654
No 311
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.22 E-value=0.1 Score=65.54 Aligned_cols=160 Identities=9% Similarity=-0.058 Sum_probs=107.8
Q ss_pred CCCCEEEEEEeCCCCEEEEE-ecCCeEEEEECCCC----eEEEEecccccCEEEEEEEcCCCEEE-EEECCCeEEEEECC
Q 000961 8 KSNRVKGLSFHSKRPWILAS-LHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVHFHKSQPLFV-SGGDDYKIKVWNYK 81 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg-~~dg~I~iWd~~~g----~~i~~l~~h~~~V~~l~fsp~~~~La-sgs~Dg~I~vWd~~ 81 (1208)
....+.+|+|++....|..+ ...+.|+.+++... .....+...-....+|++.+.+..|. +-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34567899999866655544 45678988887642 22333333445567899998775544 44567899999987
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEECC--CcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCe
Q 000961 82 MHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDD--QTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQT 158 (1208)
Q Consensus 82 ~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~D--g~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~ 158 (1208)
.......+.........|++.|.+.+|+.+... +.|...++........+...-.....|++.+.+..|+.+. ..+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 554433344455678999999987777776532 6788888875554444444446789999998777777765 4567
Q ss_pred EEEEECCCC
Q 000961 159 VRVWDIGAL 167 (1208)
Q Consensus 159 V~vwdl~~~ 167 (1208)
|...++.+.
T Consensus 582 I~~~d~dG~ 590 (791)
T 3m0c_C 582 ISSIDVNGG 590 (791)
T ss_dssp EEEEETTSC
T ss_pred EEEEecCCC
Confidence 888888663
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.19 E-value=0.2 Score=56.70 Aligned_cols=236 Identities=11% Similarity=0.039 Sum_probs=127.3
Q ss_pred cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCe-EEEEEc---cCCCCEEEEEEcCC---CCEEEEEEC----C----Cc
Q 000961 52 GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHR-CLFTLL---GHLDYIRTVQFHHE---YPWIVSASD----D----QT 116 (1208)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~-~~~~l~---~h~~~I~~v~fs~d---~~~l~s~s~----D----g~ 116 (1208)
..-.+++|.|+|+++++ ..+|.|.+++ .+++ .+..+. ........|+|+|+ +.+|+.+.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34678999999985555 5569999997 4554 222221 12356889999998 555655543 2 56
Q ss_pred EEEEECCCC-------eEE-EEEe-cCCCCEEEEEEeeCCCEEEEEECC-------------CeEEEEECCCCccccccC
Q 000961 117 IRIWNWQSR-------TCI-SVLT-GHNHYVMCASFHPKEDLVVSASLD-------------QTVRVWDIGALRKKTVSP 174 (1208)
Q Consensus 117 I~iwd~~s~-------~~i-~~l~-~h~~~V~~l~~~p~~~~l~s~s~D-------------g~V~vwdl~~~~~~~~~~ 174 (1208)
|..|+.... +.+ ..+. ...+....+.|.|+|.+.++.+.. |.|..++..+. . +
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~----p 181 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-P----P 181 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-C----C
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-C----C
Confidence 777776543 111 1122 122345678999999866664322 23333333220 0 0
Q ss_pred CCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeCCC---cEEEEECCC--------C------
Q 000961 175 ADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGADDR---QVKLWRMNE--------T------ 236 (1208)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~dg---~I~iwd~~~--------~------ 236 (1208)
.. +. +. . ......++. ....++|+| ++.++++-...+ .|.+...-. +
T Consensus 182 ~~--------np--f~--~--~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~ 246 (354)
T 3a9g_A 182 AD--------NP--FP--N--SPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGE 246 (354)
T ss_dssp TT--------SS--ST--T--CCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTT
T ss_pred CC--------CC--CC--C--CcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCC
Confidence 00 00 00 0 011223443 345799999 666555433222 233322111 0
Q ss_pred ceeEEEeecCcCCCeEEEEEc-------cCCCEEEEEeCCCcEEEEeCCCC-eeE--EEee-cCCCCEEEEEEeCCCCEE
Q 000961 237 KAWEVDTLRGHMNNVSCVMFH-------AKQDIIVSNSEDKSIRVWDVTKR-TGV--QTFR-REHDRFWILASHPEMNLL 305 (1208)
Q Consensus 237 ~~~~~~~l~~h~~~V~~l~~s-------p~g~~l~sgs~dg~I~vwd~~~~-~~~--~~~~-~~~~~i~~la~sp~~~~l 305 (1208)
-..++..+.........+.|. .+|.++++....+.|...++... ... ..+. ....++..+++.|||.++
T Consensus 247 ~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~ly 326 (354)
T 3a9g_A 247 FVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGIL 326 (354)
T ss_dssp SCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEE
T ss_pred CcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEE
Confidence 000122221123457788883 46777777767778888887753 222 2222 224678999999999877
Q ss_pred EEEE
Q 000961 306 AAGH 309 (1208)
Q Consensus 306 a~g~ 309 (1208)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7654
No 313
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.15 E-value=0.078 Score=58.91 Aligned_cols=188 Identities=6% Similarity=0.126 Sum_probs=120.4
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcC----CC---EEEE-EEC--CCeEEEEECC--CCeEEE
Q 000961 20 KRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKS----QP---LFVS-GGD--DYKIKVWNYK--MHRCLF 87 (1208)
Q Consensus 20 dg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~----~~---~Las-gs~--Dg~I~vWd~~--~~~~~~ 87 (1208)
...+++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ |+ ++++ .-. +++|.+|++. ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456666667788999998 9999998854 66788887763 22 2233 334 5799999773 433 44
Q ss_pred EEcc------CC-CCEEEEEE--cCC-CC-EEEEEECCCcEEEEECC-------CCeEEEEEecCCCCEEEEEEeeCCCE
Q 000961 88 TLLG------HL-DYIRTVQF--HHE-YP-WIVSASDDQTIRIWNWQ-------SRTCISVLTGHNHYVMCASFHPKEDL 149 (1208)
Q Consensus 88 ~l~~------h~-~~I~~v~f--s~d-~~-~l~s~s~Dg~I~iwd~~-------s~~~i~~l~~h~~~V~~l~~~p~~~~ 149 (1208)
.+.. .. ..+..+++ ++. +. ++++...+|.+..|++. +.+.++++.. .+.+-.+...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 4421 11 45666777 664 43 67888889999999882 3456677764 457888889988899
Q ss_pred EEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE-ecc-CCCeEEEEE--cCCCC-EEEEEe-
Q 000961 150 VVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL-EGH-DRGVNWAAF--HPTLP-LIVSGA- 223 (1208)
Q Consensus 150 l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~V~~l~~--sp~g~-~L~sgs- 223 (1208)
|+.+-++.-|..++....... ........ .++ ...+..+++ .++++ +|++++
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~----------------------~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ 251 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGS----------------------NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ 251 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCS----------------------CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred EEEecccceEEEEeCCcCCCC----------------------CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence 999999977666664321100 00011111 111 235677777 45555 565555
Q ss_pred CCCcEEEEECC
Q 000961 224 DDRQVKLWRMN 234 (1208)
Q Consensus 224 ~dg~I~iwd~~ 234 (1208)
.+.+..+||..
T Consensus 252 G~~s~~Vydr~ 262 (355)
T 3amr_A 252 GNSSYAIYDRQ 262 (355)
T ss_dssp GGTEEEEEESS
T ss_pred CCCEEEEEECC
Confidence 67789999986
No 314
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.14 E-value=0.13 Score=57.25 Aligned_cols=201 Identities=11% Similarity=0.165 Sum_probs=123.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCC----CC---EEEEEEC---CCcEEEEEC--CCCeEEE
Q 000961 62 SQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHE----YP---WIVSASD---DQTIRIWNW--QSRTCIS 129 (1208)
Q Consensus 62 ~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d----~~---~l~s~s~---Dg~I~iwd~--~s~~~i~ 129 (1208)
...+++....++-+.|||+ +|+.+..+.. +.+..+..-|+ ++ ++++... +++|.+|++ .+++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456666667789999999 7898888863 55666666553 22 2333333 579999966 3443 44
Q ss_pred EEec------CC-CCEEEEEE--eeC-CC-EEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 130 VLTG------HN-HYVMCASF--HPK-ED-LVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 130 ~l~~------h~-~~V~~l~~--~p~-~~-~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
.+.. .. ..+..+++ +|. +. ++++...+|.+..|++....... .......
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~--------------------~~~~lVR 174 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY--------------------ISGKKVR 174 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC--------------------EEEEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc--------------------ccceEEE
Confidence 4421 11 44555666 664 33 68888889999999984311100 0111111
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEeec-Cc-CCCeEEEEE--ccCCC-EEEEEe-CC
Q 000961 199 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK---AWEVDTLR-GH-MNNVSCVMF--HAKQD-IIVSNS-ED 269 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~---~~~~~~l~-~h-~~~V~~l~~--sp~g~-~l~sgs-~d 269 (1208)
.+. ..+.+..+...+....|.++-++.-|..++..... ...+.... ++ ...+..+++ .++++ +|++++ .+
T Consensus 175 ~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 175 AFK-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred Eec-CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 222 23568889999988899999998766666644221 11133331 22 246888888 45555 566555 56
Q ss_pred CcEEEEeCC-CCeeEEEee
Q 000961 270 KSIRVWDVT-KRTGVQTFR 287 (1208)
Q Consensus 270 g~I~vwd~~-~~~~~~~~~ 287 (1208)
.+..+||.. +.+.+..|.
T Consensus 254 ~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 254 SSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TEEEEEESSTTCCEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEE
Confidence 789999986 566666665
No 315
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.09 E-value=0.019 Score=63.27 Aligned_cols=160 Identities=11% Similarity=0.144 Sum_probs=112.2
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEe-cCCeEEEEECCCCeEEEE-ecc----cc--cCEEEEEE---EcCCCEEEEEE----
Q 000961 6 ETKSNRVKGLSFHSKRPWILASL-HSGVIQLWDYRMGTLIDR-FDE----HD--GPVRGVHF---HKSQPLFVSGG---- 70 (1208)
Q Consensus 6 ~~h~~~V~~lafspdg~~Lasg~-~dg~I~iWd~~~g~~i~~-l~~----h~--~~V~~l~f---sp~~~~Lasgs---- 70 (1208)
.+..----+++|++.+..+..++ ..|+|..||...+..... +.+ .+ ..+.+|.| .|+++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 33444456889998666666665 789999999876644333 322 11 13689999 68887777644
Q ss_pred ---------CCCeEEEEECC---CCeEEEEEc--c-----------CCCCEEEEEEcCCCCEEEEEECC-CcEEEEECCC
Q 000961 71 ---------DDYKIKVWNYK---MHRCLFTLL--G-----------HLDYIRTVQFHHEYPWIVSASDD-QTIRIWNWQS 124 (1208)
Q Consensus 71 ---------~Dg~I~vWd~~---~~~~~~~l~--~-----------h~~~I~~v~fs~d~~~l~s~s~D-g~I~iwd~~s 124 (1208)
.+..|..+|+. +++.+.... . -......++..++|+..++++.. +.|...+...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 26789999999 787766553 1 11247899999999988888888 8887777654
Q ss_pred CeEEEEEe--c----CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCC
Q 000961 125 RTCISVLT--G----HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA 166 (1208)
Q Consensus 125 ~~~i~~l~--~----h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~ 166 (1208)
. .+..+. . .....+.++++|+++.|++....|.+..+|+..
T Consensus 169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 4 333221 1 112356899999999998887799999999873
No 316
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.07 E-value=0.12 Score=56.85 Aligned_cols=203 Identities=10% Similarity=0.135 Sum_probs=125.4
Q ss_pred EEEEEEcCCCEEEEEE-CCCeEEEEECCCCeEEEE-Ecc----CCC--CEEEEEE---cCCCCEEEEEE-----------
Q 000961 55 RGVHFHKSQPLFVSGG-DDYKIKVWNYKMHRCLFT-LLG----HLD--YIRTVQF---HHEYPWIVSAS----------- 112 (1208)
Q Consensus 55 ~~l~fsp~~~~Lasgs-~Dg~I~vWd~~~~~~~~~-l~~----h~~--~I~~v~f---s~d~~~l~s~s----------- 112 (1208)
-+++|++....|..++ ..++|..|+...+..... +.+ ... .+..+.| .|++.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4688998767676666 789999999975543333 221 111 3578999 58876666543
Q ss_pred --CCCcEEEEECC---CCeEEEEEe--c-----------CCCCEEEEEEeeCCCEEEEEECC-CeEEEEECCCCcccccc
Q 000961 113 --DDQTIRIWNWQ---SRTCISVLT--G-----------HNHYVMCASFHPKEDLVVSASLD-QTVRVWDIGALRKKTVS 173 (1208)
Q Consensus 113 --~Dg~I~iwd~~---s~~~i~~l~--~-----------h~~~V~~l~~~p~~~~l~s~s~D-g~V~vwdl~~~~~~~~~ 173 (1208)
.+..|..+|+. +++.+.... . -......++..++|+..++++.. +.|...+..+......
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~- 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF- 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE-
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee-
Confidence 26779999998 787766553 1 11347899999999999988888 8877776654311100
Q ss_pred CCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeec-C---cCC
Q 000961 174 PADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLR-G---HMN 249 (1208)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~-~---h~~ 249 (1208)
... ........+.+.++++|+|..|++....|.+..+|+.....+++..-+ + ...
T Consensus 175 ------~~~---------------~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~ 233 (334)
T 2p9w_A 175 ------AWE---------------SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLS 233 (334)
T ss_dssp ------EEC---------------CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCT
T ss_pred ------eec---------------CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCccccc
Confidence 000 000112345778999999999998877999999998854321122110 2 122
Q ss_pred CeEEE-EEccCCCE-EEEEeCCCcEEEEeCCC
Q 000961 250 NVSCV-MFHAKQDI-IVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 250 ~V~~l-~~sp~g~~-l~sgs~dg~I~vwd~~~ 279 (1208)
....+ ..-.+|+. +++....+.+.+.+...
T Consensus 234 ~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 234 GTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp TEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred CcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 33443 22336776 44444555555555433
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.98 E-value=0.3 Score=55.19 Aligned_cols=244 Identities=12% Similarity=0.079 Sum_probs=126.7
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCe-EEEEec---ccccCEEEEEEEcC---CCEEEEEEC----C----C
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGT-LIDRFD---EHDGPVRGVHFHKS---QPLFVSGGD----D----Y 73 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~-~i~~l~---~h~~~V~~l~fsp~---~~~Lasgs~----D----g 73 (1208)
-....+|+|.|+|+++ ++..+|.|+++| .+++ .+..+. ........|+|+|+ +..|.++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~-V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYL-VTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEE-EEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEE-EEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 3457899999999754 455679999998 5665 222221 22356889999997 444444332 3 5
Q ss_pred eEEEEECCCC-------eEEE-EEcc-CCCCEEEEEEcCCCCEEEEEEC-------------CCcEEEEECCCC------
Q 000961 74 KIKVWNYKMH-------RCLF-TLLG-HLDYIRTVQFHHEYPWIVSASD-------------DQTIRIWNWQSR------ 125 (1208)
Q Consensus 74 ~I~vWd~~~~-------~~~~-~l~~-h~~~I~~v~fs~d~~~l~s~s~-------------Dg~I~iwd~~s~------ 125 (1208)
.|..|+.... +.+. .+.. .......+.|.|||.+.++.+. .|.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7888887654 1121 1221 1123467999999986665432 145555554422
Q ss_pred ---eEEEEEecCCCCEEEEEEee-CCCEEEEEECCC---eEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 126 ---TCISVLTGHNHYVMCASFHP-KEDLVVSASLDQ---TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 126 ---~~i~~l~~h~~~V~~l~~~p-~~~~l~s~s~Dg---~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
..+. ..+|. ....++|+| ++++.++-.... .|.+.. .+..-.. +. .. ......+. .....
T Consensus 186 f~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGw-p~---~~---g~~~~~~~--~~p~~ 252 (354)
T 3a9g_A 186 FPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGW-PL---AT---GKAGRGEF--VDPVI 252 (354)
T ss_dssp STTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCT-TT---CC---SCCCCTTS--CCCSE
T ss_pred CCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCC-Cc---cc---CCCCCCCC--cCCEe
Confidence 1121 22343 346789999 555444432221 132221 1110000 00 00 00000000 00011
Q ss_pred EEeccCCCeEEEEEc-------CCCCEEEEEeCCCcEEEEECCCC-ceeEEEee-cCcCCCeEEEEEccCCCEEEEEe
Q 000961 199 VLEGHDRGVNWAAFH-------PTLPLIVSGADDRQVKLWRMNET-KAWEVDTL-RGHMNNVSCVMFHAKQDIIVSNS 267 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~s-------p~g~~L~sgs~dg~I~iwd~~~~-~~~~~~~l-~~h~~~V~~l~~sp~g~~l~sgs 267 (1208)
.+.........++|. .+|.++++....+.|...++... +......+ .+....+..+++.|||.+.++..
T Consensus 253 ~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 253 DTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp ECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 110122356677773 46666666666778888888753 22112222 23346789999999998766654
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.95 E-value=0.24 Score=56.08 Aligned_cols=253 Identities=11% Similarity=0.054 Sum_probs=127.0
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEe-------cccccCEEEEEEEcC---CCEE-EEEEC-------
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRF-------DEHDGPVRGVHFHKS---QPLF-VSGGD------- 71 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l-------~~h~~~V~~l~fsp~---~~~L-asgs~------- 71 (1208)
.....|+|.|+|++|+++...|.|++++. ++.....+ ....+....|+|+|+ +..| ++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 45689999999983445557899999984 44432211 122345789999995 4444 44332
Q ss_pred CCeEEEEECCCC--e--EEEE-Ecc------CCCCEEEEEEcCCCCEEEEEEC-------------CCcEEEEECCCCe-
Q 000961 72 DYKIKVWNYKMH--R--CLFT-LLG------HLDYIRTVQFHHEYPWIVSASD-------------DQTIRIWNWQSRT- 126 (1208)
Q Consensus 72 Dg~I~vWd~~~~--~--~~~~-l~~------h~~~I~~v~fs~d~~~l~s~s~-------------Dg~I~iwd~~s~~- 126 (1208)
...|..|++... + .... +.. ....-..+.|.|||.+.++.++ .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235777776532 1 1111 111 1112357999999964444433 1456666655320
Q ss_pred -----------EEEEE-ecCCCCEEEEEEeeCCCEEEEEECCC--eEEEEECCCCcccccc--CCCcce---eeccc-cc
Q 000961 127 -----------CISVL-TGHNHYVMCASFHPKEDLVVSASLDQ--TVRVWDIGALRKKTVS--PADDIL---RLSQM-NT 186 (1208)
Q Consensus 127 -----------~i~~l-~~h~~~V~~l~~~p~~~~l~s~s~Dg--~V~vwdl~~~~~~~~~--~~~~~~---~~~~~-~~ 186 (1208)
....+ .+| .....++|+|....|.++.... .=.|.-+..+..-... ...... .+... ..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 11112 233 3467899999433455544321 1122222221110000 000000 00000 00
Q ss_pred cccccccceEEEEEeccCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceeEEEee-cCcCCCeEEEEEcc
Q 000961 187 DLFGGVDAVVKYVLEGHDRGVNWAAFHP-------TLPLIVSGADDRQVKLWRMNETKAWEVDTL-RGHMNNVSCVMFHA 258 (1208)
Q Consensus 187 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp-------~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l-~~h~~~V~~l~~sp 258 (1208)
...+. ......+. +......+.|.. +|.++++....+.|...++..++......+ ......+..+++.|
T Consensus 256 ~~~~~--~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 256 IVAGT--EQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp SCTTS--CCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCc--cCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 00000 00111222 334567777764 466777666778888888776543222222 23345789999999
Q ss_pred CCCEEEEEe
Q 000961 259 KQDIIVSNS 267 (1208)
Q Consensus 259 ~g~~l~sgs 267 (1208)
+|.+.++..
T Consensus 333 dG~lyv~td 341 (353)
T 2g8s_A 333 DGYLYVLTD 341 (353)
T ss_dssp TSCEEEEEC
T ss_pred CCcEEEEEe
Confidence 998666543
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.87 E-value=0.032 Score=61.60 Aligned_cols=228 Identities=13% Similarity=0.105 Sum_probs=116.6
Q ss_pred CCCEEEEEe-cC-----CeEEEEECCCCeEEEE--ecccccCEEEEEEEcCCCEEEEEECC-----CeEEEEECCCCe--
Q 000961 20 KRPWILASL-HS-----GVIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKSQPLFVSGGDD-----YKIKVWNYKMHR-- 84 (1208)
Q Consensus 20 dg~~Lasg~-~d-----g~I~iWd~~~g~~i~~--l~~h~~~V~~l~fsp~~~~Lasgs~D-----g~I~vWd~~~~~-- 84 (1208)
++..++.|+ .+ ..+.+||..+++-... +........+ ...++.+++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~--~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS--VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEE--EEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccE--EEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455667776 33 3688999887754332 2111111122 22366777888754 468899988755
Q ss_pred -EEE--EEccCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEEecCCCC-EEEEEEeeCCCEEEEEEC
Q 000961 85 -CLF--TLLGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQSRTCISVLTGHNHY-VMCASFHPKEDLVVSASL 155 (1208)
Q Consensus 85 -~~~--~l~~h~~~I~~v~fs~d~~~l~s~s~D-----g~I~iwd~~s~~~i~~l~~h~~~-V~~l~~~p~~~~l~s~s~ 155 (1208)
... .+......-..+.+ ++..++.|+.+ ..+.+||..+.+-...-...... -.++.. -++..++.|+.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 168 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGY 168 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCB
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCC
Confidence 322 22211112222222 55566666543 36889998876543322111111 111222 25666666664
Q ss_pred C-----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC-----
Q 000961 156 D-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD----- 225 (1208)
Q Consensus 156 D-----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d----- 225 (1208)
+ ..+.+||+.+.+-....+. .........+.+ ++.+++.|+.+
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~-------------------------p~~r~~~~~~~~--~~~i~v~GG~~~~~~~ 221 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPM-------------------------ATKRSGAGVALL--NDHIYVVGGFDGTAHL 221 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCC-------------------------SSCCBSCEEEEE--TTEEEEECCBCSSSBC
T ss_pred CCCcccceEEEEeCCCCcEEeCCCC-------------------------CcccccceEEEE--CCEEEEEeCCCCCccc
Confidence 4 3577888776543321110 000011112222 45677777654
Q ss_pred CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCe
Q 000961 226 RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKRT 281 (1208)
Q Consensus 226 g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d-----g~I~vwd~~~~~ 281 (1208)
..+.+||..+.+...+..+.........+.+ ++.+++.|+.+ ..+.+||..+.+
T Consensus 222 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 222 SSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4689999988764333333322222233333 56677777655 346777776654
No 320
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.85 E-value=0.00077 Score=77.55 Aligned_cols=124 Identities=10% Similarity=-0.009 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCc-
Q 000961 642 LALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDV- 720 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~- 720 (1208)
+.-++|+|+++.++.+. ++...|..+|..+...|+|+.|..+|.++.++.++..++...|+.+...+....+ ++.
T Consensus 103 ~Y~Klg~l~e~e~f~~~-pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA---~~~~ 178 (449)
T 1b89_A 103 ALAKTNRLAELEEFING-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA---NSTR 178 (449)
T ss_dssp ------CHHHHTTTTTC-C----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH---TCHH
T ss_pred HHHHhCCHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc---CCch
Confidence 45557899888877544 3345899999999999999999999999999999999999999999988777755 344
Q ss_pred --hhhHHHHHhcCCHHHHHHHHHHcCC----ChHHHHHHHhcCChHHHHHHHHHc
Q 000961 721 --MGQFHNALYLGDVKERVKILESAGH----LPLAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 721 --~~~~~~al~lgd~~~A~~i~~~~g~----~~~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
..........|+++.|+........ ...++..+++.|.+++|..++++.
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444556777888888654433221 223456788889999998888874
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.77 E-value=0.58 Score=52.84 Aligned_cols=248 Identities=14% Similarity=0.099 Sum_probs=127.2
Q ss_pred CEEEEEEEcCCC-EEEEEECCCeEEEEECCCCeEEEEE-------ccCCCCEEEEEEcCC---CCEEEEEEC--------
Q 000961 53 PVRGVHFHKSQP-LFVSGGDDYKIKVWNYKMHRCLFTL-------LGHLDYIRTVQFHHE---YPWIVSASD-------- 113 (1208)
Q Consensus 53 ~V~~l~fsp~~~-~Lasgs~Dg~I~vWd~~~~~~~~~l-------~~h~~~I~~v~fs~d---~~~l~s~s~-------- 113 (1208)
.-+.|+|.|+|+ ++++ ...|.|++++.. ++....+ .........++|+|+ +.+|+.+..
T Consensus 19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999 5554 567999999853 3322111 112346789999996 555555432
Q ss_pred CCcEEEEECCCC--e--EEE-EEec------CCCCEEEEEEeeCCCEEEEEECC-------------CeEEEEECCCCcc
Q 000961 114 DQTIRIWNWQSR--T--CIS-VLTG------HNHYVMCASFHPKEDLVVSASLD-------------QTVRVWDIGALRK 169 (1208)
Q Consensus 114 Dg~I~iwd~~s~--~--~i~-~l~~------h~~~V~~l~~~p~~~~l~s~s~D-------------g~V~vwdl~~~~~ 169 (1208)
...|..|++..+ + ... .+.. ..+....+.|.|+|.+.++.+.. |.|.-++..+.-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~- 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI- 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC-
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC-
Confidence 235666666432 1 111 1211 12334679999999655554332 345555543310
Q ss_pred ccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcC-CCCEEEEEeC-CCcEEEEECCCCce---------
Q 000961 170 KTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHP-TLPLIVSGAD-DRQVKLWRMNETKA--------- 238 (1208)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~g~~L~sgs~-dg~I~iwd~~~~~~--------- 238 (1208)
+.. +. ..+...........++ +....++|+| +|.++++-.. ++.=.|..+..+..
T Consensus 176 ----p~~--------np-f~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~ 241 (353)
T 2g8s_A 176 ----PDD--------NP-FIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWG 241 (353)
T ss_dssp ----CTT--------CT-TTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSS
T ss_pred ----CCC--------CC-CcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCC
Confidence 000 00 0000000001112233 3467899999 5554443221 11112222211110
Q ss_pred --------------------eEEEeecCcCCCeEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCeeEEE--e-ec
Q 000961 239 --------------------WEVDTLRGHMNNVSCVMFHA-------KQDIIVSNSEDKSIRVWDVTKRTGVQT--F-RR 288 (1208)
Q Consensus 239 --------------------~~~~~l~~h~~~V~~l~~sp-------~g~~l~sgs~dg~I~vwd~~~~~~~~~--~-~~ 288 (1208)
.++..+. +...+..+.|.+ +|.++++....+.|...++..++.... + ..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~ 320 (353)
T 2g8s_A 242 INYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTD 320 (353)
T ss_dssp BCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGG
T ss_pred CCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccC
Confidence 0011122 223566778864 467777776778888888776554433 2 22
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCeeeEee
Q 000961 289 EHDRFWILASHPEMNLLAAGHDSGMIVFKL 318 (1208)
Q Consensus 289 ~~~~i~~la~sp~~~~la~g~~~gi~v~~l 318 (1208)
...++..+++.|+|.++++.....=.||++
T Consensus 321 ~~~rp~~v~~~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 321 RGQRIRDVRTGPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp GCCCEEEEEECTTSCEEEEECSTTEEEEEE
T ss_pred CCCceeEEEECCCCcEEEEEeCCCCEEEEE
Confidence 345789999999998776544333344443
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.66 E-value=0.084 Score=58.33 Aligned_cols=227 Identities=10% Similarity=0.029 Sum_probs=116.6
Q ss_pred CEEEEEec--CCeEEEEECCCCeEEEE--ecccccCEEEEEEEcCCCEEEEEECC----CeEEEEECCCCeEEEEEc--c
Q 000961 22 PWILASLH--SGVIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKSQPLFVSGGDD----YKIKVWNYKMHRCLFTLL--G 91 (1208)
Q Consensus 22 ~~Lasg~~--dg~I~iWd~~~g~~i~~--l~~h~~~V~~l~fsp~~~~Lasgs~D----g~I~vWd~~~~~~~~~l~--~ 91 (1208)
..++.|+. ...+.+||..+++-... +......-.++. -++.+++.||.+ ..+.+||..+.+....-. .
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35556654 35789999888764332 211111112222 366777888754 678899998876543321 1
Q ss_pred CCCCEEEEEEcCCCCEEEEEECC------CcEEEEECCCCeEEEEEecCCC-CEEEEEEeeCCCEEEEEEC---------
Q 000961 92 HLDYIRTVQFHHEYPWIVSASDD------QTIRIWNWQSRTCISVLTGHNH-YVMCASFHPKEDLVVSASL--------- 155 (1208)
Q Consensus 92 h~~~I~~v~fs~d~~~l~s~s~D------g~I~iwd~~s~~~i~~l~~h~~-~V~~l~~~p~~~~l~s~s~--------- 155 (1208)
....-..+.+ ++..++.|+.+ ..+.+||..+.+-...-..... .-.+++. -++..++.|+.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 1111222222 56666666654 4688999887754332111111 1111222 25566666553
Q ss_pred CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CcEEE
Q 000961 156 DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-----RQVKL 230 (1208)
Q Consensus 156 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d-----g~I~i 230 (1208)
-..+.+||+.+.+-....+. ......-..+.+ ++.+++.|+.+ ..+.+
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~-------------------------p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~ 220 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPM-------------------------IEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEY 220 (306)
T ss_dssp CCCEEEEETTTTEEEEECCC-------------------------SSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEE
T ss_pred cceEEEeCCCCCeEEECCCc-------------------------cchhhcceEEEE--CCEEEEEeCCCCCCCCceEEE
Confidence 34477888776543221110 000011111222 45666776643 45889
Q ss_pred EECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCee
Q 000961 231 WRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKRTG 282 (1208)
Q Consensus 231 wd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d-----g~I~vwd~~~~~~ 282 (1208)
||..+.+-..+..+........++.+ ++.+++.|+.+ ..+.+||..+.+-
T Consensus 221 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 221 YDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred eeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 99988764333333322223333333 56777888754 4577888776543
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.64 E-value=1 Score=50.36 Aligned_cols=249 Identities=14% Similarity=0.081 Sum_probs=128.3
Q ss_pred ccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEE--EEE----ccCCCCEEEEEEcCC---CCEEEEE-E--CCCc
Q 000961 49 EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCL--FTL----LGHLDYIRTVQFHHE---YPWIVSA-S--DDQT 116 (1208)
Q Consensus 49 ~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~--~~l----~~h~~~I~~v~fs~d---~~~l~s~-s--~Dg~ 116 (1208)
..-..-+.|+|.|+|.++++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|+.. + .++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 33445689999999998877765899999987655432 222 123456889999996 4455543 2 3455
Q ss_pred EEEEECCCC----------eEEE-EEe-cCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccc
Q 000961 117 IRIWNWQSR----------TCIS-VLT-GHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQM 184 (1208)
Q Consensus 117 I~iwd~~s~----------~~i~-~l~-~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~ 184 (1208)
|.-|.+..+ +.+. .+. ...+....+.|.|+|.+.++.+..+... ..+ ........++++...
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~-----~~q-d~~~~~G~IlRi~~d 182 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTG-----LSQ-DRKSLGGKILRMTPD 182 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGG-----GTT-CTTCSTTCEEEECTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCc-----ccc-CCCCCCCEEEEEeCC
Confidence 666655431 2221 222 2234456799999998777655322110 000 000001111221111
Q ss_pred cc----cccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce----------------eEEEe
Q 000961 185 NT----DLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETKA----------------WEVDT 243 (1208)
Q Consensus 185 ~~----~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~~~~----------------~~~~~ 243 (1208)
.. .-|. . ......+| +....++|+|+|.+.++=. .++.-.|..+..+.. .++..
T Consensus 183 G~ip~~nPf~--~--~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 183 GEPAPGNPFP--G--SPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp SSBCTTCSST--T--CCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred CCccCCCCCC--C--CeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 10 0000 0 01123344 3456789999887655432 222222222222211 01222
Q ss_pred ecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee----EEEeecCCCCEEEEEEeCCCCEEEEEE
Q 000961 244 LRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTG----VQTFRREHDRFWILASHPEMNLLAAGH 309 (1208)
Q Consensus 244 l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~~----~~~~~~~~~~i~~la~sp~~~~la~g~ 309 (1208)
+..+......++|. +|.+++..-..+.|....+..... ...+.....++..++..|||.++++..
T Consensus 258 ~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 258 WSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 22222355677776 456666655566666666654432 222334456889999999998776654
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.60 E-value=0.38 Score=54.03 Aligned_cols=203 Identities=11% Similarity=0.117 Sum_probs=114.0
Q ss_pred EEEEEEEcCCCEEEEEE------------CCCeEEEEECCC--CeE-EEEEcc-----CCCCEEEEEEcC--CCC-EEEE
Q 000961 54 VRGVHFHKSQPLFVSGG------------DDYKIKVWNYKM--HRC-LFTLLG-----HLDYIRTVQFHH--EYP-WIVS 110 (1208)
Q Consensus 54 V~~l~fsp~~~~Lasgs------------~Dg~I~vWd~~~--~~~-~~~l~~-----h~~~I~~v~fs~--d~~-~l~s 110 (1208)
.-.+...|+|..+++++ .+|.|.++|.++ ++. ...+.+ .......+.+.+ ++. +|+.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34566778775555542 689999999873 221 112232 223667777766 344 4555
Q ss_pred EEC---CCcEEEEECCC--Ce--EEEEEecC-CCCEEEEEEeeCCCEEEEEEC---C--------------CeEEEEECC
Q 000961 111 ASD---DQTIRIWNWQS--RT--CISVLTGH-NHYVMCASFHPKEDLVVSASL---D--------------QTVRVWDIG 165 (1208)
Q Consensus 111 ~s~---Dg~I~iwd~~s--~~--~i~~l~~h-~~~V~~l~~~p~~~~l~s~s~---D--------------g~V~vwdl~ 165 (1208)
+.. +.+|.+|++.. +. .+..+.+. -.....+.+.++|.+.++... | |.|..+|..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 432 46777876653 32 22333332 245788999998876665431 1 222222211
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CceeEEEe
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNE-TKAWEVDT 243 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs-~dg~I~iwd~~~-~~~~~~~~ 243 (1208)
.+.... ..-..-+.++|+||++.+.++. ..+.|..|++.. +.......
T Consensus 212 -----------------------------~~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~ 261 (355)
T 3sre_A 212 -----------------------------DVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV 261 (355)
T ss_dssp -----------------------------CCEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred -----------------------------eEEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEE
Confidence 011112 2234568899999998877765 578899999864 33222223
Q ss_pred ecCcCCCeEEEEEcc-CCCEEEEEeCC-CcEEEEeCC--CCeeEEEee
Q 000961 244 LRGHMNNVSCVMFHA-KQDIIVSNSED-KSIRVWDVT--KRTGVQTFR 287 (1208)
Q Consensus 244 l~~h~~~V~~l~~sp-~g~~l~sgs~d-g~I~vwd~~--~~~~~~~~~ 287 (1208)
+ ...+....+++.+ +|++.+++..+ +.|..|+.. .+..+..++
T Consensus 262 ~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 262 L-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp E-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred E-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 3 2346678899999 59887766544 345555543 244444444
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.56 E-value=0.084 Score=58.18 Aligned_cols=229 Identities=10% Similarity=0.107 Sum_probs=115.1
Q ss_pred CCCEEEEEecC----CeEEEEECCCCeEEEE--ecccccCEEEEEEEcCCCEEEEEECC-----CeEEEEECCCCeEEEE
Q 000961 20 KRPWILASLHS----GVIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKSQPLFVSGGDD-----YKIKVWNYKMHRCLFT 88 (1208)
Q Consensus 20 dg~~Lasg~~d----g~I~iWd~~~g~~i~~--l~~h~~~V~~l~fsp~~~~Lasgs~D-----g~I~vWd~~~~~~~~~ 88 (1208)
++..++.|+.+ ..+..||..+.+-... +......-..+ .-++.+++.||.+ ..+.+||..+.+....
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMV--YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEE--EECCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 34566666643 4688899887754332 11111111122 2367777787754 3588899887654332
Q ss_pred E--ccCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeEEEEEecC-CCCEEEEEEeeCCCEEEEEECC----
Q 000961 89 L--LGHLDYIRTVQFHHEYPWIVSASDDQ-----TIRIWNWQSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLD---- 156 (1208)
Q Consensus 89 l--~~h~~~I~~v~fs~d~~~l~s~s~Dg-----~I~iwd~~s~~~i~~l~~h-~~~V~~l~~~p~~~~l~s~s~D---- 156 (1208)
- ......-..+.+ ++..++.|+.++ .+.+||..+.+-...-... ...-.+++. -++..++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence 1 111111222222 556666666543 5778898876543321111 111112222 255566665532
Q ss_pred ---CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CcE
Q 000961 157 ---QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-----RQV 228 (1208)
Q Consensus 157 ---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d-----g~I 228 (1208)
..+.+||+.+.+-....+. .........+.+ ++.+++.|+.+ ..+
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~-------------------------p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 222 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEM-------------------------STRRSGAGVGVL--NNLLYAVGGHDGPLVRKSV 222 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCC-------------------------SSCCBSCEEEEE--TTEEEEECCBSSSSBCCCE
T ss_pred ccccEEEEEeCCCCcEEECCCC-------------------------ccccccccEEEE--CCEEEEECCCCCCcccceE
Confidence 3477888776543221110 000011112222 45677777654 468
Q ss_pred EEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCee
Q 000961 229 KLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK-----SIRVWDVTKRTG 282 (1208)
Q Consensus 229 ~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg-----~I~vwd~~~~~~ 282 (1208)
.+||..+.+...+..+.........+.+ ++.+++.|+.++ .+.+||..+.+-
T Consensus 223 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 223 EVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 8999988764333333222222222222 567777777553 478888776543
No 326
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.55 E-value=1.1 Score=49.93 Aligned_cols=248 Identities=14% Similarity=0.085 Sum_probs=129.3
Q ss_pred CCCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeE--EEEe----cccccCEEEEEEEcC----CCEEEEEE--CCCeE
Q 000961 8 KSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL--IDRF----DEHDGPVRGVHFHKS----QPLFVSGG--DDYKI 75 (1208)
Q Consensus 8 h~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~--i~~l----~~h~~~V~~l~fsp~----~~~Lasgs--~Dg~I 75 (1208)
.-.....|+|.|||.++++--..|.|++++..+++. +..+ ....+....|+|+|+ +.+.++-+ .++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 345678999999999777664489999998665543 2222 234566899999995 43334322 44567
Q ss_pred EEEECCCC----------eEEE-EEc-cCCCCEEEEEEcCCCCEEEEEEC-------------CCcEEEEECCCC-----
Q 000961 76 KVWNYKMH----------RCLF-TLL-GHLDYIRTVQFHHEYPWIVSASD-------------DQTIRIWNWQSR----- 125 (1208)
Q Consensus 76 ~vWd~~~~----------~~~~-~l~-~h~~~I~~v~fs~d~~~l~s~s~-------------Dg~I~iwd~~s~----- 125 (1208)
.-|.+..+ +.+. .+. .....-..+.|.|||.+.++.++ .|.|.-.+....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 77766541 2222 222 11223467999999986666542 244544454322
Q ss_pred ----eEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEE
Q 000961 126 ----TCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVL 200 (1208)
Q Consensus 126 ----~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1208)
..+. -.+|. ....++|+|++.+.++-. .|+.=.+--+..+..--. +. .. .....-+. ......+
T Consensus 190 Pf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGw-P~---~~---g~~~~~~~--~~P~~~~ 258 (347)
T 3das_A 190 PFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGW-PE---AE---GKGGGSGF--HDPVAQW 258 (347)
T ss_dssp SSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCT-TT---CC---SSCCCTTC--CCCSEEE
T ss_pred CCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecC-Cc---cc---CCCCCccc--cCCcEec
Confidence 1111 12443 346789999876444321 122122222221111000 00 00 00000000 0011122
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEeecCcCCCeEEEEEccCCCEEEEEe
Q 000961 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW--EVDTLRGHMNNVSCVMFHAKQDIIVSNS 267 (1208)
Q Consensus 201 ~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~~sp~g~~l~sgs 267 (1208)
..+......++|. +|..++..-..+.|....+...... ....+.+....+..+...|||.++++.+
T Consensus 259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 259 STDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 2222355667776 3556666556666766666554320 1223444557899999999998766654
No 327
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.55 E-value=0.0027 Score=79.38 Aligned_cols=157 Identities=8% Similarity=-0.051 Sum_probs=95.5
Q ss_pred CCEEEEEEeCCCCEEEEEe-cCCeEEEEECCC----CeEEEEecccccCEEEEEEEcCC-CEEEEEECCCeEEEEECCCC
Q 000961 10 NRVKGLSFHSKRPWILASL-HSGVIQLWDYRM----GTLIDRFDEHDGPVRGVHFHKSQ-PLFVSGGDDYKIKVWNYKMH 83 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~-~dg~I~iWd~~~----g~~i~~l~~h~~~V~~l~fsp~~-~~Lasgs~Dg~I~vWd~~~~ 83 (1208)
..+.+|+|++.+..|..+. ..+.|+.+++.. ......+...-.....|++.+.+ .++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3566889999777776664 457899999765 22222222122234568887544 44555456788999998755
Q ss_pred eEEEEEccCCCCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEE
Q 000961 84 RCLFTLLGHLDYIRTVQFHHEYPWIVSASD--DQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVR 160 (1208)
Q Consensus 84 ~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~--Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~ 160 (1208)
.....+.........+++.|.+.+|+.+.. .+.|.++++........+...-.....++|+|++..|+.+. ..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 433333333345678899987666655543 26787777654322222222234567799998765555544 567899
Q ss_pred EEECCC
Q 000961 161 VWDIGA 166 (1208)
Q Consensus 161 vwdl~~ 166 (1208)
++++.+
T Consensus 566 ~~d~dG 571 (699)
T 1n7d_A 566 SIDVNG 571 (699)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 998865
No 328
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.46 E-value=0.11 Score=57.12 Aligned_cols=190 Identities=13% Similarity=0.188 Sum_probs=95.6
Q ss_pred CCCEEEEEE-CC-----CeEEEEECCCCeEEEE--EccCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCCe--
Q 000961 62 SQPLFVSGG-DD-----YKIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQSRT-- 126 (1208)
Q Consensus 62 ~~~~Lasgs-~D-----g~I~vWd~~~~~~~~~--l~~h~~~I~~v~fs~d~~~l~s~s~D-----g~I~iwd~~s~~-- 126 (1208)
++.+++.|+ .+ ..+.+||..+.+.... +.........+ ..++..++.|+.+ ..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344566666 32 3688899887654331 11111111222 2345566666654 468999988755
Q ss_pred -E--EEEEecCCCCEEEEEEeeCCCEEEEEECC-----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEE
Q 000961 127 -C--ISVLTGHNHYVMCASFHPKEDLVVSASLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKY 198 (1208)
Q Consensus 127 -~--i~~l~~h~~~V~~l~~~p~~~~l~s~s~D-----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1208)
- +..+......- +++. .++..++.|+.+ ..+.+||..+.+-....
T Consensus 92 ~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~------------------------- 144 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLA-GATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG------------------------- 144 (301)
T ss_dssp CCEEECCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-------------------------
T ss_pred eeEECCCCCCCccce-eEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-------------------------
Confidence 2 22221111111 1222 256666666543 35777887664422210
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC----
Q 000961 199 VLEGHDRGVNWAAFHPTLPLIVSGADD-----RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED---- 269 (1208)
Q Consensus 199 ~~~~h~~~V~~l~~sp~g~~L~sgs~d-----g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d---- 269 (1208)
...........+.+ ++.+++.|+.+ ..+.+||..+.+...+..+.........+.+ ++.+++.|+.+
T Consensus 145 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~ 220 (301)
T 2vpj_A 145 DMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAH 220 (301)
T ss_dssp ECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSB
T ss_pred CCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcc
Confidence 00000111112222 56677777654 4588999988764333333222222233333 56777777654
Q ss_pred -CcEEEEeCCCCeeEE
Q 000961 270 -KSIRVWDVTKRTGVQ 284 (1208)
Q Consensus 270 -g~I~vwd~~~~~~~~ 284 (1208)
..+.+||+.+.+-..
T Consensus 221 ~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 221 LSSVEAYNIRTDSWTT 236 (301)
T ss_dssp CCCEEEEETTTTEEEE
T ss_pred cceEEEEeCCCCcEEE
Confidence 468899988766443
No 329
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.35 E-value=0.31 Score=53.68 Aligned_cols=188 Identities=10% Similarity=0.023 Sum_probs=94.9
Q ss_pred CEEEEEEC--CCeEEEEECCCCeEEEE--EccCCCCEEEEEEcCCCCEEEEEECC----CcEEEEECCCCeEEEEEecCC
Q 000961 64 PLFVSGGD--DYKIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYPWIVSASDD----QTIRIWNWQSRTCISVLTGHN 135 (1208)
Q Consensus 64 ~~Lasgs~--Dg~I~vWd~~~~~~~~~--l~~h~~~I~~v~fs~d~~~l~s~s~D----g~I~iwd~~s~~~i~~l~~h~ 135 (1208)
.+++.||. ...+.+||..+.+.... +......-..+. -++..++.|+.+ ..+.+||..+++-...-....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35556654 35788999887764422 111111222222 255566666654 678899998875433221111
Q ss_pred CCE-EEEEEeeCCCEEEEEECC------CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeE
Q 000961 136 HYV-MCASFHPKEDLVVSASLD------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVN 208 (1208)
Q Consensus 136 ~~V-~~l~~~p~~~~l~s~s~D------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 208 (1208)
... .+++ .-++..++.|+.+ ..+.+||..+.+-....+. ........
T Consensus 91 ~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-------------------------p~~r~~~~ 144 (306)
T 3ii7_A 91 PRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM-------------------------LTQRCSHG 144 (306)
T ss_dssp CCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC-------------------------SSCCBSCE
T ss_pred cccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC-------------------------cCCcceeE
Confidence 111 1122 2256666777654 4578888776543221110 00001111
Q ss_pred EEEEcCCCCEEEEEeC---------CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-----CcEEE
Q 000961 209 WAAFHPTLPLIVSGAD---------DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSIRV 274 (1208)
Q Consensus 209 ~l~~sp~g~~L~sgs~---------dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d-----g~I~v 274 (1208)
.+.+ ++.+++.|+. ...+.+||..+.+...+..+......-..+.+ ++.+++.|+.+ ..+.+
T Consensus 145 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~ 220 (306)
T 3ii7_A 145 MVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEY 220 (306)
T ss_dssp EEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEE
T ss_pred EEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEE
Confidence 1222 4556666653 34588999988764333333222222223333 56677776643 35888
Q ss_pred EeCCCCeeE
Q 000961 275 WDVTKRTGV 283 (1208)
Q Consensus 275 wd~~~~~~~ 283 (1208)
||..+.+-.
T Consensus 221 yd~~~~~W~ 229 (306)
T 3ii7_A 221 YDIKLNEWK 229 (306)
T ss_dssp EETTTTEEE
T ss_pred eeCCCCcEE
Confidence 998876543
No 330
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.013 Score=58.14 Aligned_cols=120 Identities=14% Similarity=-0.049 Sum_probs=87.4
Q ss_pred HHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCH
Q 000961 654 ASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDV 733 (1208)
Q Consensus 654 ~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~ 733 (1208)
+.|-+.++-+.-..+|+..-....|+..-+...+.+|++.+..+|...||++++.-+..+............++...|++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~ 92 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDF 92 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccH
Confidence 33333344333333333332333455555555667899999999999999999987766433332334556788889999
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCChHHHHHHHHHcCCCC
Q 000961 734 KERVKILESAGHLPLAYITASVHGLQDVAERLAAELGDNV 773 (1208)
Q Consensus 734 ~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~~~~~ 773 (1208)
.-|...+...|..++++.+..+.|.+.+|..++++.++++
T Consensus 93 n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~ 132 (177)
T 3mkq_B 93 GSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEA 132 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHH
Confidence 9999999999999999999999999999999999977554
No 331
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.27 E-value=0.099 Score=55.33 Aligned_cols=153 Identities=11% Similarity=-0.032 Sum_probs=105.1
Q ss_pred HHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhH
Q 000961 617 IAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGI 680 (1208)
Q Consensus 617 ~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~ 680 (1208)
...+...|.++.|+..+. +|. ..+ ......|+++.|.+..++. ++...|..+|......|+++.
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 444556677777666543 222 222 4456789999999887642 357889999999999999999
Q ss_pred HHHHHHhhcC--c--------chhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHcCC
Q 000961 681 VEYAYQRTKN--F--------ERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGH 745 (1208)
Q Consensus 681 Ae~~y~~~~d--~--------~~l~~l~~~~g~~~kl~k~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~g~ 745 (1208)
|..+|.++-. . ..+..+|...|+.++..+..+.+...... .....++...|++++|+..|.++-.
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998755 1 23455678899999887766655443321 2334456778999999999987532
Q ss_pred ----ChH----HHHHHHhcCChHHHHHHHHHc
Q 000961 746 ----LPL----AYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 746 ----~~~----A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
... ...+....|..+.|.+..+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 204 GGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 112 224556789999998887764
No 332
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.05 E-value=0.041 Score=53.83 Aligned_cols=128 Identities=10% Similarity=-0.050 Sum_probs=84.7
Q ss_pred hHHHHHHHhCCChhhhhcccc-CcchhhH---HHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHH
Q 000961 614 QAMIAYLQQKGFPEVALHFVK-DERTRFN---LALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYA 684 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~-~~~~~f~---lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~ 684 (1208)
..+.+++...+..+.|+.+-. ++...+. ...+.|++++|.+..+. -+++..|..||......|+++.|..+
T Consensus 13 ~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 13 TAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp HHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHH
Confidence 567788888888888887643 2333443 34557999999998764 24689999999999999999999999
Q ss_pred HHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHH
Q 000961 685 YQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAER 764 (1208)
Q Consensus 685 y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~ 764 (1208)
|.+.-..+ -.+..-...+ ..++..+|++++|++.|.++ +.+......-+.|.+
T Consensus 93 ~~~al~l~--------P~~~~~~~~l-------------g~~~~~lg~~~eA~~~~~~a------l~l~~~~~~~~~A~~ 145 (151)
T 3gyz_A 93 YAVAFALG--------KNDYTPVFHT-------------GQCQLRLKAPLKAKECFELV------IQHSNDEKLKIKAQS 145 (151)
T ss_dssp HHHHHHHS--------SSCCHHHHHH-------------HHHHHHTTCHHHHHHHHHHH------HHHCCCHHHHHHHHH
T ss_pred HHHHHhhC--------CCCcHHHHHH-------------HHHHHHcCCHHHHHHHHHHH------HHhCCCHHHHHHHHH
Confidence 98863211 1222222222 24677789999999888653 333333333445555
Q ss_pred HHHH
Q 000961 765 LAAE 768 (1208)
Q Consensus 765 l~~~ 768 (1208)
+++.
T Consensus 146 ll~~ 149 (151)
T 3gyz_A 146 YLDA 149 (151)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 333
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.05 E-value=0.23 Score=54.56 Aligned_cols=190 Identities=15% Similarity=0.128 Sum_probs=94.2
Q ss_pred CCEEEEEECC----CeEEEEECCCCeEEEE--EccCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEE
Q 000961 63 QPLFVSGGDD----YKIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQSRTCISVL 131 (1208)
Q Consensus 63 ~~~Lasgs~D----g~I~vWd~~~~~~~~~--l~~h~~~I~~v~fs~d~~~l~s~s~D-----g~I~iwd~~s~~~i~~l 131 (1208)
+.+++.||.+ ..+.+||..+.+.... +......-..+. -++..++.|+.+ ..+.+||..+.+-...-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455556543 3578888887654332 111111111222 255566666644 36889998876543322
Q ss_pred ecCCCC-EEEEEEeeCCCEEEEEECCC-----eEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCC
Q 000961 132 TGHNHY-VMCASFHPKEDLVVSASLDQ-----TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDR 205 (1208)
Q Consensus 132 ~~h~~~-V~~l~~~p~~~~l~s~s~Dg-----~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 205 (1208)
...... -.+++. -++..++.|+.++ .+.+||+.+.+-....+. .....
T Consensus 94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-------------------------p~~r~ 147 (302)
T 2xn4_A 94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM-------------------------NTRRS 147 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC-------------------------SSCCB
T ss_pred CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC-------------------------CCccc
Confidence 111111 112222 2566777776553 477788766543321110 00001
Q ss_pred CeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-----CcEE
Q 000961 206 GVNWAAFHPTLPLIVSGAD-------DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSIR 273 (1208)
Q Consensus 206 ~V~~l~~sp~g~~L~sgs~-------dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d-----g~I~ 273 (1208)
....+.+ ++.+++.|+. ...+.+||..+.+-..+..+.........+.+ ++.+++.|+.+ ..+.
T Consensus 148 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 223 (302)
T 2xn4_A 148 SVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVE 223 (302)
T ss_dssp SCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEE
T ss_pred CceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEE
Confidence 1111222 4556666653 23588999988764333333322222233333 56777777654 3688
Q ss_pred EEeCCCCeeEE
Q 000961 274 VWDVTKRTGVQ 284 (1208)
Q Consensus 274 vwd~~~~~~~~ 284 (1208)
+||..+.+-..
T Consensus 224 ~yd~~~~~W~~ 234 (302)
T 2xn4_A 224 VYDPTTNAWRQ 234 (302)
T ss_dssp EEETTTTEEEE
T ss_pred EEeCCCCCEee
Confidence 89987765443
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.98 E-value=0.41 Score=52.97 Aligned_cols=225 Identities=10% Similarity=0.016 Sum_probs=112.2
Q ss_pred EEEEecCCeEEEEECCCCeEEE-EecccccCEEEEEEEcCCCEEEEEEC-----C------CeEEEEECCCCeEEEE--E
Q 000961 24 ILASLHSGVIQLWDYRMGTLID-RFDEHDGPVRGVHFHKSQPLFVSGGD-----D------YKIKVWNYKMHRCLFT--L 89 (1208)
Q Consensus 24 Lasg~~dg~I~iWd~~~g~~i~-~l~~h~~~V~~l~fsp~~~~Lasgs~-----D------g~I~vWd~~~~~~~~~--l 89 (1208)
++.|+ ..+..||..+++-.. .+..............++.+++.||. . ..+.+||..+.+.... +
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44454 579999998887543 22212223333334457888888883 1 1377888887664321 1
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEECC--------CcEEEEECCCCeEEEEEecCCC-CEEEEEEeeCCCEEEEEEC-C---
Q 000961 90 LGHLDYIRTVQFHHEYPWIVSASDD--------QTIRIWNWQSRTCISVLTGHNH-YVMCASFHPKEDLVVSASL-D--- 156 (1208)
Q Consensus 90 ~~h~~~I~~v~fs~d~~~l~s~s~D--------g~I~iwd~~s~~~i~~l~~h~~-~V~~l~~~p~~~~l~s~s~-D--- 156 (1208)
......-..+.+ ++..++.|+.+ ..+.+||..+.+-...-..... .-.+++. -++..++.|+. +
T Consensus 86 p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 86 PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSC
T ss_pred CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCc
Confidence 111111111222 45555665532 4688999887653221111111 1112222 35566666665 2
Q ss_pred --CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----cEE
Q 000961 157 --QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDR-----QVK 229 (1208)
Q Consensus 157 --g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg-----~I~ 229 (1208)
..+.+||..+.+-....+. .........+.+ ++.+++.|+.++ .+.
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~-------------------------p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPM-------------------------QTARSLFGATVH--DGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCC-------------------------SSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEE
T ss_pred ccceEEEEeCCCCeEEECCCC-------------------------CCchhceEEEEE--CCEEEEEeccCCCCccceEE
Confidence 3578888776543221110 000011112222 556777777554 488
Q ss_pred EEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC--------------cEEEEeCCCCee
Q 000961 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK--------------SIRVWDVTKRTG 282 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg--------------~I~vwd~~~~~~ 282 (1208)
+||..+.+-..+..+.........+.+ ++.+++.|+.++ .+.+||+.+.+-
T Consensus 216 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 216 VYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred EEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 899988764333333222222233333 567777777532 356677665543
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.96 E-value=0.36 Score=53.20 Aligned_cols=229 Identities=12% Similarity=0.085 Sum_probs=115.7
Q ss_pred CCCCEEEEEecC----CeEEEEECCCCeEEEE--ecccccCEEEEEEEcCCCEEEEEEC----C-----CeEEEEECCCC
Q 000961 19 SKRPWILASLHS----GVIQLWDYRMGTLIDR--FDEHDGPVRGVHFHKSQPLFVSGGD----D-----YKIKVWNYKMH 83 (1208)
Q Consensus 19 pdg~~Lasg~~d----g~I~iWd~~~g~~i~~--l~~h~~~V~~l~fsp~~~~Lasgs~----D-----g~I~vWd~~~~ 83 (1208)
-++..++.|+.+ ..+.+||..+++-... +......-..+ .-++.+++.||. + ..+.+||..+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC--VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE--EECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777742 4688999887754332 11111111122 236677777765 2 36888998876
Q ss_pred eEEEE--EccCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEE--ecCCCCEEEEEEeeCCCEEEEEE
Q 000961 84 RCLFT--LLGHLDYIRTVQFHHEYPWIVSASDD-----QTIRIWNWQSRTCISVL--TGHNHYVMCASFHPKEDLVVSAS 154 (1208)
Q Consensus 84 ~~~~~--l~~h~~~I~~v~fs~d~~~l~s~s~D-----g~I~iwd~~s~~~i~~l--~~h~~~V~~l~~~p~~~~l~s~s 154 (1208)
+.... +......-..+.+ ++..++.|+.+ ..+.+||..+.+-...- ......-.++.+ ++..++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeC
Confidence 54322 1111112222222 55556665533 46888998876543221 111111112222 566666666
Q ss_pred CC-----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC----
Q 000961 155 LD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD---- 225 (1208)
Q Consensus 155 ~D-----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d---- 225 (1208)
.+ ..+.+||+.+.+-....+. .........+.+ ++.+++.|+.+
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~-------------------------p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 229 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAM-------------------------NTIRSGAGVCVL--HNCIYAAGGYDGQDQ 229 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCC-------------------------SSCCBSCEEEEE--TTEEEEECCBCSSSB
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCC-------------------------CCccccceEEEE--CCEEEEEeCCCCCCc
Confidence 44 3577888766443221110 000111122222 55677777654
Q ss_pred -CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCee
Q 000961 226 -RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSIRVWDVTKRTG 282 (1208)
Q Consensus 226 -g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d-----g~I~vwd~~~~~~ 282 (1208)
..+.+||+.+.+...+..+.........+.+ ++.+++.|+.+ ..+.+||..+.+-
T Consensus 230 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 230 LNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred cceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 5689999988764333333222222223332 56777777654 3467777766543
No 336
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.93 E-value=0.47 Score=53.75 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=96.5
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecC----CCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCC
Q 000961 100 QFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGH----NHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPA 175 (1208)
Q Consensus 100 ~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h----~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~ 175 (1208)
..+.++..++.+- ++.||.-++.....-+.+... -..|..+..+|+|++|+..+ +..|.|-.+.........
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~-- 102 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVED-- 102 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCC--
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcc--
Confidence 3445666666655 478888888754444555432 22578899999999999886 678999998742211100
Q ss_pred CcceeeccccccccccccceEE-EEEe----ccCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEEEeec--
Q 000961 176 DDILRLSQMNTDLFGGVDAVVK-YVLE----GHDRGVNWAAFHPT---LPLIVSGADDRQVKLWRMNETKAWEVDTLR-- 245 (1208)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~-~~~~----~h~~~V~~l~~sp~---g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~-- 245 (1208)
... .....++ +.+. ....+|..+.|||- +..|++-..|+.|++||+......+. .+.
T Consensus 103 -~~~-----------~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~ 169 (452)
T 3pbp_A 103 -VSI-----------QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKP 169 (452)
T ss_dssp -HHH-----------HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCC
T ss_pred -ccc-----------ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcc
Confidence 000 0000011 1111 13578999999994 56899999999999999986332112 222
Q ss_pred -------CcCCCeEEEEEccCCCEEEEEe--CCCcEEEE
Q 000961 246 -------GHMNNVSCVMFHAKQDIIVSNS--EDKSIRVW 275 (1208)
Q Consensus 246 -------~h~~~V~~l~~sp~g~~l~sgs--~dg~I~vw 275 (1208)
.....|.+++|.+++-.|...+ +.|.|+-.
T Consensus 170 ~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 170 NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 2225678888888665555533 55555433
No 337
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.91 E-value=0.28 Score=55.55 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=73.7
Q ss_pred cCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCCCCC---
Q 000961 328 SGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSIGRG--- 404 (1208)
Q Consensus 328 ~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~~~~--- 404 (1208)
+|..++++.++.||.-++..+..-..+.++..-. ...+..+..||+|+++++.+. ..+.+..++.......
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~---f~~i~qlvlSpsG~lLAl~g~---~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLV---LDDTFHVISSTSGDLLCLFND---NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEEEECTTTCC---CCTTCEEEECTTSSEEEEECS---SEEEEEECCTTCSCCCCHH
T ss_pred CCCEEEEEECCEEEEEECCCCCcceEEecCcccc---cCceeEEEECCCCCEEEEecC---CeEEEEEecCccccCcccc
Confidence 4667777789999999988654444444442111 226888999999999998876 7899999994321111
Q ss_pred ----cc----ccc----ccCCceEEEEEEeCC---cEEEEEcCCCEEEEEecCC
Q 000961 405 ----DS----VQD----AKKGLGGSAIFIARN---RFAVLDKSSNQVLVKNLKN 443 (1208)
Q Consensus 405 ----~~----~~~----~~~~~i~~~~fs~d~---~~l~~~~~dg~I~Iwdl~~ 443 (1208)
.+ .+. .....|..+.|+|-+ ..+++-.+|++|++||+..
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 00 000 024568888998754 4566666688999999874
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.86 E-value=2.7 Score=45.95 Aligned_cols=245 Identities=11% Similarity=0.073 Sum_probs=133.8
Q ss_pred eEEecCCEEEEE---eCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCC----------CE
Q 000961 324 AFAVSGDSLFYA---KDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDG----------GS 390 (1208)
Q Consensus 324 ~~s~~~~~L~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~----------g~ 390 (1208)
.++.+++.+++. .++.|...+........+.. -.+--++++|.++..+....+ ..
T Consensus 20 ~~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~------------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~ 87 (302)
T 3s25_A 20 LFCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN------------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDR 87 (302)
T ss_dssp CEEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE------------EEEEEEEECSSEEEEEEECC------CCSSCCS
T ss_pred EEEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC------------CceeeEEEcCCEEEEEECCCCcccccceeccCC
Confidence 345667777777 25666666665544333221 122456899999988766431 12
Q ss_pred EEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEc----CCCEEEEEecCCceeeeecCCcceEEEEEeCCccE
Q 000961 391 YELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDK----SSNQVLVKNLKNEVVKKSILPIAADAIFYAGTGNL 466 (1208)
Q Consensus 391 v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~----~dg~I~Iwdl~~~~~~~l~~~~~v~~i~~s~dg~~ 466 (1208)
..||.+........ .+.. .. ...|++++++++... ....|...++++.....+..+.. ..++++|+.
T Consensus 88 ~~Iy~i~~dg~~~~--~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~---~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGST--VLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL---FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCE--EEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC---CCSEEETTE
T ss_pred CeEEEEeCCCCcce--Eeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc---eEeeEECCE
Confidence 44555544332211 1111 11 236788888877664 34567777777665555654432 456778777
Q ss_pred EEEe---CCeEEEEEcCCCeEEEEEeCCCeeEEEECCCCCEEEEEeCC---eEEEEecCccceeeeecceeeeeeEEec-
Q 000961 467 LCRA---EDRVVIFDLQQRLVLGDLQTPFVKYVVWSNDMESVALLSKH---AIIIASKKLVHQCTLHETIRVKSGAWDD- 539 (1208)
Q Consensus 467 Las~---dg~v~lwdl~~~~~l~~~~~~~v~~v~ws~dg~~la~~s~~---~i~i~~~~~~~~~~~~e~~~iks~~wd~- 539 (1208)
|... ..+|+..++..+.....+. ... ...++|++.+|+..... .|+..+.+......+.+.. +. .|+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l~~-~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~-~~--~~~~~ 233 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALFYD-CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN-IE--HYNVY 233 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEEEC-SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC-EE--EEEEE
T ss_pred EEEEeCCCceEEEEECCCCCEEEEeC-CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC-cc--eEEEC
Confidence 7654 3678888887665443333 222 33456999999887654 4777776655554444321 22 2443
Q ss_pred CCeEEEecC---CeeeeEecCCceeEEEeccccEEEEEEeCCEEEEEe-cCCceEEEEcC
Q 000961 540 NGVFIYTTL---NHIKYCLPNGDSGIIRTLDVPIYITKVSGNTIFCLD-RDGKNRAIVID 595 (1208)
Q Consensus 540 ~~~~iy~t~---~~i~y~l~~g~~g~i~~l~~~~~l~~~~~~~l~~l~-r~~~~~~~~ld 595 (1208)
.+.+.|++. .+|..+-.+|.....-.. ....-+.+.++.||..+ +.+.+..+.+|
T Consensus 234 g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~-~~~~~i~i~~d~Iy~td~~~~~i~~~~~d 292 (302)
T 3s25_A 234 GSLIFYQRGGDNPALCVVKNDGTGFKELAK-GEFCNINVTSQYVYFTDFVSNKEYCTSTQ 292 (302)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCCCEEEEE-SCEEEEEECSSEEEEEETTTCCEEEEESS
T ss_pred CCEEEEEECCCCcEEEEEECCCCccEEeeC-CccceEEEeCCEEEEEECCCCeEEEEECC
Confidence 344444422 445554445533211111 12334566788888887 33456555554
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.85 E-value=0.47 Score=52.29 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=94.5
Q ss_pred CCCEEEEEECC----CeEEEEECCCCeEEEE--EccCCCCEEEEEEcCCCCEEEEEEC----C-----CcEEEEECCCCe
Q 000961 62 SQPLFVSGGDD----YKIKVWNYKMHRCLFT--LLGHLDYIRTVQFHHEYPWIVSASD----D-----QTIRIWNWQSRT 126 (1208)
Q Consensus 62 ~~~~Lasgs~D----g~I~vWd~~~~~~~~~--l~~h~~~I~~v~fs~d~~~l~s~s~----D-----g~I~iwd~~s~~ 126 (1208)
++.+++.||.+ ..+.+||..+.+.... +......-. ++. -++..++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA-GCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce-EEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45566666632 3688888887654332 111111111 222 24555566554 2 468889988765
Q ss_pred EEEEE--ecCCCCEEEEEEeeCCCEEEEEECC-----CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEE
Q 000961 127 CISVL--TGHNHYVMCASFHPKEDLVVSASLD-----QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1208)
Q Consensus 127 ~i~~l--~~h~~~V~~l~~~p~~~~l~s~s~D-----g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1208)
-...- ......-..+.+ ++..++.|+.+ ..+.+||..+.+-....+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~------------------------ 155 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM------------------------ 155 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC------------------------
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC------------------------
Confidence 33221 111111112222 55666666533 3577888776543322110
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-----
Q 000961 200 LEGHDRGVNWAAFHPTLPLIVSGADD-----RQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED----- 269 (1208)
Q Consensus 200 ~~~h~~~V~~l~~sp~g~~L~sgs~d-----g~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d----- 269 (1208)
......-..+.+ ++.+++.|+.+ ..+.+||..+.+-..+..+.........+.+ ++.+++.|+.+
T Consensus 156 -p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 230 (308)
T 1zgk_A 156 -LTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQL 230 (308)
T ss_dssp -SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBC
T ss_pred -CccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCcc
Confidence 000011112222 45667777654 4588999887764333322222222233333 56777777654
Q ss_pred CcEEEEeCCCCeeE
Q 000961 270 KSIRVWDVTKRTGV 283 (1208)
Q Consensus 270 g~I~vwd~~~~~~~ 283 (1208)
..+.+||+.+.+-.
T Consensus 231 ~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 231 NSVERYDVETETWT 244 (308)
T ss_dssp CCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCcEE
Confidence 45889998876543
No 340
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.79 E-value=0.099 Score=63.68 Aligned_cols=155 Identities=14% Similarity=0.022 Sum_probs=98.1
Q ss_pred HHHHHHHhCCChhhhhccccC-----cc---hhh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCCh
Q 000961 615 AMIAYLQQKGFPEVALHFVKD-----ER---TRF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNA 678 (1208)
Q Consensus 615 ~i~~yl~~~g~~e~Al~~~~~-----~~---~~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~ 678 (1208)
.++..+.+.|..+.|+.+... |. ..+ .+...+|+++.|.+..++. ++...|..||......|++
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344445555666666554431 11 111 4566788888888876642 3466888888888888888
Q ss_pred hHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHHcCC--c---hhhHHHHHhcCCHHHHHHHHHHcC-
Q 000961 679 GIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKND--V---MGQFHNALYLGDVKERVKILESAG- 744 (1208)
Q Consensus 679 ~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~~~~--~---~~~~~~al~lgd~~~A~~i~~~~g- 744 (1208)
+.|.+.|.++-. +..+..+|...|+.++..+..+.+..... . ......+...|++++|+++|.++-
T Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888877532 23355667778888887766655543221 1 223344566799999988888761
Q ss_pred -------CCh---HH----HHHHHhcCChHHHHHHHHHc
Q 000961 745 -------HLP---LA----YITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 745 -------~~~---~A----~~~a~~~g~~~~a~~l~~~~ 769 (1208)
.++ .+ ..+...+|..++|.++.+++
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 111 12 24556788888888888763
No 341
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.67 E-value=0.07 Score=65.01 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=112.4
Q ss_pred hHHHHHHHhCCChhhhhcccc-----Ccch---h---hHHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCC
Q 000961 614 QAMIAYLQQKGFPEVALHFVK-----DERT---R---FNLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGN 677 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~-----~~~~---~---f~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~ 677 (1208)
..+...+.+.|..+.|++.+. +|.. . -......|++++|++..++. ++...|..||..+...|+
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC
Confidence 446677788899999988765 2321 1 24566789999999987652 357899999999999999
Q ss_pred hhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHHc----C-Cc-------hhhHHHHHhcCCHHHHH
Q 000961 678 AGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVK----N-DV-------MGQFHNALYLGDVKERV 737 (1208)
Q Consensus 678 ~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~~----~-~~-------~~~~~~al~lgd~~~A~ 737 (1208)
++.|+++|.++-. +..+..+|...|+.++..++.+.+... + +. ......+...|++++|+
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999998643 445677888999999987665554332 1 21 12334466789999999
Q ss_pred HHHHHcCC----ChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 738 KILESAGH----LPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 738 ~i~~~~g~----~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
++|.++-. ...++ .+....|.+++|.+..+++
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99977421 12222 4567789999999988864
No 342
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.55 E-value=1.4 Score=48.55 Aligned_cols=187 Identities=10% Similarity=0.079 Sum_probs=95.4
Q ss_pred EEEEEECCCeEEEEECCCCeEEE-EEccCCCCEEEEEEcCCCCEEEEEEC-----C------CcEEEEECCCCeEEEEEe
Q 000961 65 LFVSGGDDYKIKVWNYKMHRCLF-TLLGHLDYIRTVQFHHEYPWIVSASD-----D------QTIRIWNWQSRTCISVLT 132 (1208)
Q Consensus 65 ~Lasgs~Dg~I~vWd~~~~~~~~-~l~~h~~~I~~v~fs~d~~~l~s~s~-----D------g~I~iwd~~s~~~i~~l~ 132 (1208)
+++.|+ ..+.+||..+++... .+..............++..++.|+. . ..+.+||..+++-.. +.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CC
Confidence 344555 579999999887543 12212223333344457777777773 1 127788988765422 11
Q ss_pred cCCCCE--EEEEEeeCCCEEEEEECC--------CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEec
Q 000961 133 GHNHYV--MCASFHPKEDLVVSASLD--------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEG 202 (1208)
Q Consensus 133 ~h~~~V--~~l~~~p~~~~l~s~s~D--------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1208)
....+- .+++.. ++..++.|+.+ ..+.+||..+.+-....+. ..
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-------------------------p~ 137 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL-------------------------PY 137 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC-------------------------SS
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC-------------------------CC
Confidence 111111 112222 45566666532 3477888776543221110 00
Q ss_pred cCCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC-----c
Q 000961 203 HDRGVNWAAFHPTLPLIVSGAD------DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK-----S 271 (1208)
Q Consensus 203 h~~~V~~l~~sp~g~~L~sgs~------dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg-----~ 271 (1208)
.......+. -++.+++.|+. -..+.+||..+.+-..+..+........++.+ ++.+++.|+.++ .
T Consensus 138 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 213 (315)
T 4asc_A 138 VVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSS 213 (315)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEE
T ss_pred cccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccce
Confidence 001111112 24556677765 24688999988764333323222222223333 567778877654 4
Q ss_pred EEEEeCCCCeeEE
Q 000961 272 IRVWDVTKRTGVQ 284 (1208)
Q Consensus 272 I~vwd~~~~~~~~ 284 (1208)
+.+||..+.+-..
T Consensus 214 ~~~yd~~~~~W~~ 226 (315)
T 4asc_A 214 AEVYSITDNKWAP 226 (315)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCeEEE
Confidence 7888888765443
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.45 E-value=3.9 Score=44.76 Aligned_cols=213 Identities=7% Similarity=0.010 Sum_probs=111.8
Q ss_pred cCCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECC--------------CeEEEEECC
Q 000961 102 HHEYPWIVSAS--DDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLD--------------QTVRVWDIG 165 (1208)
Q Consensus 102 s~d~~~l~s~s--~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~D--------------g~V~vwdl~ 165 (1208)
+.++.+|+... .++.|...+..... ...+... .+--+++++++|+-+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35666776664 24666666654433 3333321 234568889888877643 346666665
Q ss_pred CCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEe--C--CCcEEEEECCCCceeEE
Q 000961 166 ALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGA--D--DRQVKLWRMNETKAWEV 241 (1208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs--~--dg~I~iwd~~~~~~~~~ 241 (1208)
+.+... +.. .. ...|+++++.|+-.. . ...|...++.....
T Consensus 97 g~~~~~----------------------------l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--- 141 (302)
T 3s25_A 97 GHGSTV----------------------------LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--- 141 (302)
T ss_dssp SCCCEE----------------------------EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC---
T ss_pred CCcceE----------------------------eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe---
Confidence 533211 111 11 236777888888776 2 34555556665442
Q ss_pred EeecCcCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCCeeeEeeCC
Q 000961 242 DTLRGHMNNVSCVMFHAKQDIIVSNSE-DKSIRVWDVTKRTGVQTFRREHDRFWILASHPEMNLLAAGHDSGMIVFKLER 320 (1208)
Q Consensus 242 ~~l~~h~~~V~~l~~sp~g~~l~sgs~-dg~I~vwd~~~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~gi~v~~l~~ 320 (1208)
..+..+.. ..++|+++.|.-.+. ...|.+.++..+.....+. +... ..++|++..|+.....
T Consensus 142 ~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~--------- 204 (302)
T 3s25_A 142 KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVN--------- 204 (302)
T ss_dssp EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGG---------
T ss_pred EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcC---------
Confidence 23333322 346778888886665 5678888876655433222 1111 2244555555443311
Q ss_pred CcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccC
Q 000961 321 ERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPK 398 (1208)
Q Consensus 321 ~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~ 398 (1208)
....|..-++.++....+.. . .+ ..|+|++++|..+.....+.+..-++.+
T Consensus 205 ---------------~~~~I~~~~ldG~~~~~Lt~-------~---~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 205 ---------------RDNAIVHVNINNPNPVVLTE-------A---NI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp ---------------GTTEEEEECSSSCCCEECSC-------S---CE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred ---------------CCcEEEEEECCCCCeEEEeC-------C---Cc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 12345555555544322210 1 22 4588889988665544445555555554
No 344
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.37 E-value=0.17 Score=52.08 Aligned_cols=153 Identities=10% Similarity=-0.003 Sum_probs=101.0
Q ss_pred HHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHc-CChh
Q 000961 617 IAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQ-GNAG 679 (1208)
Q Consensus 617 ~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~-g~~~ 679 (1208)
...+...|.++.|+..++ +|. ..+ ......|+++.|.+..++. ++...|..+|...... |+++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHH
Confidence 444556667777666543 222 122 4456689999988877642 3577889999999999 9999
Q ss_pred HHHHHHHhhcC----------cchhHHHHHhcCCHHHHHHHHHHHHHcC-Cc----hhhHHHHHhcCCHHHHHHHHHHcC
Q 000961 680 IVEYAYQRTKN----------FERLSFLYLITGNMDKLSKMLKIAEVKN-DV----MGQFHNALYLGDVKERVKILESAG 744 (1208)
Q Consensus 680 ~Ae~~y~~~~d----------~~~l~~l~~~~g~~~kl~k~~~~~~~~~-~~----~~~~~~al~lgd~~~A~~i~~~~g 744 (1208)
.|..+|.+.-. +..+..+|...|+.++..+..+.+.... +. .....++...|++++|+..|.++-
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988654 1234556778899988776655544332 21 223345667899999999887642
Q ss_pred -----CCh----HHHHHHHhcCChHHHHHHHHHc
Q 000961 745 -----HLP----LAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 745 -----~~~----~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
... ....+....|..+.|..+.+.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 175 SRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 222 2234456788888888777764
No 345
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.32 E-value=0.19 Score=58.57 Aligned_cols=155 Identities=15% Similarity=0.056 Sum_probs=98.7
Q ss_pred hHHHHHHHhCCChhhhhcccc-----Ccch------hhH---------------HHHhcCCHHHHHHHHHHh-----CCh
Q 000961 614 QAMIAYLQQKGFPEVALHFVK-----DERT------RFN---------------LALESGNIQIAVASAKEI-----DEK 662 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~-----~~~~------~f~---------------lal~~g~~~~A~~~a~~~-----~~~ 662 (1208)
..+...+.+.|..+.|+..+. +|.. ... .....|+++.|++..++. ++.
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 177 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 345555677777777776543 2321 111 256678888888877642 356
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHHc-CCchhh----------
Q 000961 663 DHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVK-NDVMGQ---------- 723 (1208)
Q Consensus 663 ~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~~-~~~~~~---------- 723 (1208)
..|..+|......|+++.|..+|.++-. +..+..+|...|+.++..+..+.+... .+....
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 7788888888888888888888887532 234556777888888876655544332 222111
Q ss_pred ------HHHHHhcCCHHHHHHHHHHcC----CC--------hHHHHHHHhcCChHHHHHHHHH
Q 000961 724 ------FHNALYLGDVKERVKILESAG----HL--------PLAYITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 724 ------~~~al~lgd~~~A~~i~~~~g----~~--------~~A~~~a~~~g~~~~a~~l~~~ 768 (1208)
...+...|++++|+++|.++- .- ..-..+....|..++|.+..+.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345666788888888887751 11 1112345567888888888776
No 346
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.27 E-value=0.18 Score=50.36 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=24.2
Q ss_pred HhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 644 LESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 644 l~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
...|+++.|++..+.. +++..|..+|......++++.|...|.+.
T Consensus 50 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 99 (184)
T 3vtx_A 50 MDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRA 99 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555554331 23455555666666666666666555553
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.22 E-value=6.3 Score=45.86 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=63.7
Q ss_pred CCCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeE--EEEecc------cccCEEEEEEEcC---CCEEEEE-EC-----
Q 000961 9 SNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTL--IDRFDE------HDGPVRGVHFHKS---QPLFVSG-GD----- 71 (1208)
Q Consensus 9 ~~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~--i~~l~~------h~~~V~~l~fsp~---~~~Lasg-s~----- 71 (1208)
-....+|+|.|+|+++++-...+.|.+++..+++. +..+.. ..+....|+|+|+ +..|..+ +.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34668999999999777654445798888655543 223321 2456789999995 4444443 32
Q ss_pred -------CCeEEEEECCCC-------eEEEE-Ec-cCCCCEEEEEEcCCCCEEEEEEC
Q 000961 72 -------DYKIKVWNYKMH-------RCLFT-LL-GHLDYIRTVQFHHEYPWIVSASD 113 (1208)
Q Consensus 72 -------Dg~I~vWd~~~~-------~~~~~-l~-~h~~~I~~v~fs~d~~~l~s~s~ 113 (1208)
...|.-|++... +.+.. +. ........|.|.|||.+.++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665322 12221 22 12235789999999986666543
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.18 E-value=3.5 Score=48.19 Aligned_cols=315 Identities=13% Similarity=0.087 Sum_probs=169.6
Q ss_pred EEEEEECCCeEEEEECCCCccccccCCCccee-----eccccccccccccceEEEEEeccCCCeEEEEEc---CCCCEEE
Q 000961 149 LVVSASLDQTVRVWDIGALRKKTVSPADDILR-----LSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFH---PTLPLIV 220 (1208)
Q Consensus 149 ~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---p~g~~L~ 220 (1208)
.+.||+..|.|+|+-+.+.+.....|--..-. .......+.... .... .-..|. ..+++. -||++|.
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~-~~~~-~gD~HH---p~~S~tdg~yDGrylf 146 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDS-AKFL-NGDCHH---PHISMTDGKYDGKYLF 146 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGG-GGCC-CCCCCC---CEEEEETTEEEEEEEE
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcC-CCcc-CCCcCC---CcccccCCeeeeEEEE
Confidence 46788889999999998887765543211000 000000111100 0000 000111 122332 2677888
Q ss_pred EEe-CCCcEEEEECCCCceeEEEeecCcCCCeEEEEEc--cCCCEEEEEeCC-------CcEE---------E---EeCC
Q 000961 221 SGA-DDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFH--AKQDIIVSNSED-------KSIR---------V---WDVT 278 (1208)
Q Consensus 221 sgs-~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~s--p~g~~l~sgs~d-------g~I~---------v---wd~~ 278 (1208)
... .+.+|-..++...++-.+..++ ....+..+.|- |+-.+++++++. |... + .|..
T Consensus 147 iNdkan~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~ 225 (638)
T 3sbq_A 147 INDKANSRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAE 225 (638)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETT
T ss_pred EecCCCcceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCC
Confidence 877 4677888899988875555543 45667888886 788899888753 2210 0 1111
Q ss_pred CCeeEEEeecCCCCEEEEEEeCCCCEEEEEECCC----------------eeeEeeCCCcceEEecCCEEEEEeCC-eEE
Q 000961 279 KRTGVQTFRREHDRFWILASHPEMNLLAAGHDSG----------------MIVFKLERERPAFAVSGDSLFYAKDR-FLR 341 (1208)
Q Consensus 279 ~~~~~~~~~~~~~~i~~la~sp~~~~la~g~~~g----------------i~v~~l~~~~~~~s~~~~~L~~~~d~-~i~ 341 (1208)
+.+...++.. .+..-.....+++.+.++.+-+. +.+|++.+-... ...|+.. ..++ .+.
T Consensus 226 tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~-vk~G~~~--~~~g~gv~ 301 (638)
T 3sbq_A 226 TMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAA-VKAGDFI--TLGDSKTP 301 (638)
T ss_dssp TCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHH-HHTTCCB--CCTTCCCC
T ss_pred ccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHH-HhcCCeE--EECCCCee
Confidence 1111111111 11122234455666666554322 111111100000 0011110 0111 466
Q ss_pred EEEccC----C-cceeeEeecCCCCCCCCcCCeEEEEcCCCCEEEEEEecCCCEEEEEEccCCCC---CCC-------cc
Q 000961 342 YYEFST----Q-KDTQVIPIRRPGSTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSI---GRG-------DS 406 (1208)
Q Consensus 342 v~d~~~----~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~~g~v~l~~l~~~~~---~~~-------~~ 406 (1208)
+.|... + .....++..+ .+..+..+|||+++++.+. -+.++.++++..-.. ..+ ..
T Consensus 302 ViD~~~~~~~~~~~~~~iP~pk--------sPHGv~vsPDGkyi~v~GK-LsptvtV~d~~k~~~~~~~k~~~~~~~~~a 372 (638)
T 3sbq_A 302 VLDGRKKDGKDSKFTRYVPVPK--------NPHGCNTSSDGKYFIAAGK-LSPTCSMIAIDKLPDLFAGKLADPRDVIVG 372 (638)
T ss_dssp EEECSCBTTBCCSSEEEEEESS--------SCCCEEECTTSCEEEEECT-TSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred EEccccccccCCceEEEEeCCC--------CCcceeeCCCCCEEEEcCC-CCCeEEEEEeehhhhhhhccccCcccceEe
Confidence 666654 2 2333444443 5667999999999887665 556899999874110 000 00
Q ss_pred cccccCCceEEEEEEeCCcEEEEEcCCCEEEEEecCC-----------ceeeeecCCcceEEEEE------eCCccEEEE
Q 000961 407 VQDAKKGLGGSAIFIARNRFAVLDKSSNQVLVKNLKN-----------EVVKKSILPIAADAIFY------AGTGNLLCR 469 (1208)
Q Consensus 407 ~~~~~~~~i~~~~fs~d~~~l~~~~~dg~I~Iwdl~~-----------~~~~~l~~~~~v~~i~~------s~dg~~Las 469 (1208)
..+ -.-.....+|.++|....+..-|..|.-|++.. ..+.++..|..+-.+.. .++|++|++
T Consensus 373 e~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ 451 (638)
T 3sbq_A 373 EPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVA 451 (638)
T ss_dssp CCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEE
T ss_pred ecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEE
Confidence 111 112456789999996667777899999999873 46677777777777766 678999988
Q ss_pred e-----C----------CeEEEEEcCCCe
Q 000961 470 A-----E----------DRVVIFDLQQRL 483 (1208)
Q Consensus 470 ~-----d----------g~v~lwdl~~~~ 483 (1208)
. | ..-.|+|++..+
T Consensus 452 lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 452 LSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred ecccccccCcCCCCCCCCcceeEecCCCc
Confidence 3 2 456888886544
No 349
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.06 E-value=0.19 Score=53.03 Aligned_cols=145 Identities=11% Similarity=0.027 Sum_probs=93.6
Q ss_pred HHHHHhhcccccccchHHHHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHHhC-------
Q 000961 599 YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKEID------- 660 (1208)
Q Consensus 599 ~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~~~------- 660 (1208)
+.+++..-+.....-..+...+.+.|.++.|++.+. +|. ..+ .+....|+++.|.+..++.-
T Consensus 60 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 139 (252)
T 2ho1_A 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139 (252)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc
Confidence 344444433322222345566678888888887654 222 222 45667899999999987642
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHHcCCch-----hhHHHH
Q 000961 661 EKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKNDVM-----GQFHNA 727 (1208)
Q Consensus 661 ~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~-----~~~~~a 727 (1208)
+...|..+|......|+++.|..+|.+.-. +..+..+|...|+.++.....+.+....... ....++
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 256889999999999999999999988532 3455667788999998877766554433221 122334
Q ss_pred HhcCCHHHHHHHHHHc
Q 000961 728 LYLGDVKERVKILESA 743 (1208)
Q Consensus 728 l~lgd~~~A~~i~~~~ 743 (1208)
...|++++|.++|.++
T Consensus 220 ~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 220 KVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 4456666666665543
No 350
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.03 E-value=0.13 Score=53.99 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=20.3
Q ss_pred HhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHh
Q 000961 644 LESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQR 687 (1208)
Q Consensus 644 l~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~ 687 (1208)
...|+++.|.+..++. +++..|..+|......|+++.|...|.+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3345555554444321 2344445555555555555555554444
No 351
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.93 E-value=0.29 Score=48.24 Aligned_cols=46 Identities=9% Similarity=0.069 Sum_probs=27.9
Q ss_pred HHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 643 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
....|+++.|.+..++. ++...|..+|......|+++.|..+|.++
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 102 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34566666666655431 33556666666666666666666666654
No 352
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.90 E-value=0.41 Score=52.57 Aligned_cols=153 Identities=13% Similarity=-0.014 Sum_probs=91.9
Q ss_pred HHHHHHhCCChhhhhcccc-----Cc---chhh---HHHHhcC-CHHHHHHHHHHh-----CChhHHHHHHHHHHHcCCh
Q 000961 616 MIAYLQQKGFPEVALHFVK-----DE---RTRF---NLALESG-NIQIAVASAKEI-----DEKDHWYRLGVEALRQGNA 678 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~-----~~---~~~f---~lal~~g-~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~ 678 (1208)
....+.+.|..+.|+..+. +| ...+ ......| +++.|.+..++. +++..|..+|......|++
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence 3444556667776665443 22 2222 3345567 788777776542 2356788888888888888
Q ss_pred hHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHcCC
Q 000961 679 GIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGH 745 (1208)
Q Consensus 679 ~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~g~ 745 (1208)
+.|..+|.++-.. ..+..+|...|+.++..+..+.+...... .....++...|++++|++.|.++-.
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8888888775322 23555677788888777666655443322 1233445667888888888766532
Q ss_pred C-------------hHHH----HHHHhcCChHHHHHHHHH
Q 000961 746 L-------------PLAY----ITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 746 ~-------------~~A~----~~a~~~g~~~~a~~l~~~ 768 (1208)
. ..++ .+....|..++|.+..+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1 1111 334556777777777765
No 353
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.81 E-value=1.2 Score=49.19 Aligned_cols=226 Identities=10% Similarity=0.015 Sum_probs=109.3
Q ss_pred EEEEEecCCeEEEEECCCCeEEEE-ecccccCEEEEEEEcCCCEEEEEEC----CC-------eEEEEECCCCeEEEE--
Q 000961 23 WILASLHSGVIQLWDYRMGTLIDR-FDEHDGPVRGVHFHKSQPLFVSGGD----DY-------KIKVWNYKMHRCLFT-- 88 (1208)
Q Consensus 23 ~Lasg~~dg~I~iWd~~~g~~i~~-l~~h~~~V~~l~fsp~~~~Lasgs~----Dg-------~I~vWd~~~~~~~~~-- 88 (1208)
.++.|+. .+..||..+++-... ...............++.+++.||. ++ .+.+||..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444442 488999988865441 1111122223333457788888873 12 277888877654332
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEECC-------CcEEEEECCCCeEEEEEecCCCCE-EEEEEeeCCCEEEEEEC-----
Q 000961 89 LLGHLDYIRTVQFHHEYPWIVSASDD-------QTIRIWNWQSRTCISVLTGHNHYV-MCASFHPKEDLVVSASL----- 155 (1208)
Q Consensus 89 l~~h~~~I~~v~fs~d~~~l~s~s~D-------g~I~iwd~~s~~~i~~l~~h~~~V-~~l~~~p~~~~l~s~s~----- 155 (1208)
+......-..+.+ ++..++.|+.+ ..+.+||..+.+-...-....... .+++. .++..++.|+.
T Consensus 96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence 1111111122222 55666666653 357888988765433211111000 11222 35666666653
Q ss_pred -CCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CcEE
Q 000961 156 -DQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADD-----RQVK 229 (1208)
Q Consensus 156 -Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~d-----g~I~ 229 (1208)
-..+.+||+.+.+-....+. .........+.+ ++.+++.|+.+ ..+.
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~-------------------------p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 225 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPM-------------------------KTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVE 225 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCC-------------------------SSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEE
T ss_pred ccceEEEEcCCCCEEEECCCC-------------------------CCCcccceEEEE--CCEEEEEcCcCCCCccceEE
Confidence 23578888876543221110 000001111222 45677777643 3477
Q ss_pred EEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC--------------CcEEEEeCCCCee
Q 000961 230 LWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED--------------KSIRVWDVTKRTG 282 (1208)
Q Consensus 230 iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d--------------g~I~vwd~~~~~~ 282 (1208)
+||..+.+-..+..+.........+.+ ++.+++.|+.+ ..+.+||..+.+-
T Consensus 226 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 226 AFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp EEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred EEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 899888764333333222222222322 46677776653 2466777665543
No 354
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.76 E-value=0.11 Score=53.96 Aligned_cols=152 Identities=18% Similarity=0.114 Sum_probs=86.7
Q ss_pred HHHHHhCCChhhhhcccc-----Ccch---hh---HHHHhcCCHHHHHHHHHH---h--CChhHHHHHHHHHHHc-----
Q 000961 617 IAYLQQKGFPEVALHFVK-----DERT---RF---NLALESGNIQIAVASAKE---I--DEKDHWYRLGVEALRQ----- 675 (1208)
Q Consensus 617 ~~yl~~~g~~e~Al~~~~-----~~~~---~f---~lal~~g~~~~A~~~a~~---~--~~~~~w~~La~~al~~----- 675 (1208)
...+.+.|.++.|+..+. +|.. .+ ......|+++.|....++ + +++..|..||.....+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Confidence 444566677777766443 3332 23 344567888888887654 2 3467888888888888
Q ss_pred ------CChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHHcCCc----hhhHHHHHhcCCHHHHH
Q 000961 676 ------GNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKNDV----MGQFHNALYLGDVKERV 737 (1208)
Q Consensus 676 ------g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~----~~~~~~al~lgd~~~A~ 737 (1208)
|+++.|+.+|.+.-. +..+..+|...|+.++.....+.+....+. .....++..+|++++|+
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~ 171 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEAL 171 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHH
Confidence 899999988887532 234556777888888876555554433322 12334466779999999
Q ss_pred HHHHHcCC----ChHHH-H---HHHhcCChHHHHHHHHH
Q 000961 738 KILESAGH----LPLAY-I---TASVHGLQDVAERLAAE 768 (1208)
Q Consensus 738 ~i~~~~g~----~~~A~-~---~a~~~g~~~~a~~l~~~ 768 (1208)
..|.++=. ...++ . +....|..++|.+..++
T Consensus 172 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 172 AQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88887521 11221 2 23345666666665544
No 355
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.75 E-value=0.71 Score=45.86 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=86.8
Q ss_pred HHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHH
Q 000961 643 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k 709 (1208)
....|+++.|++..++ -+++..|..||......|+++.|...+.+.-.. ..+..++...++.+...+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 94 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAID 94 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456777777777654 256889999999999999999999999886322 234456677888888776
Q ss_pred HHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHcC----CChHHH----HHHHhcCChHHHHHHHHH
Q 000961 710 MLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAG----HLPLAY----ITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 710 ~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~g----~~~~A~----~~a~~~g~~~~a~~l~~~ 768 (1208)
..+.+...... .....++..+|++++|++.|.++= ....++ .+....|..++|.+..++
T Consensus 95 ~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 95 ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555443322 223445677899999999987642 222232 345667888888887765
No 356
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.71 E-value=0.26 Score=45.42 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=41.8
Q ss_pred HHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHH
Q 000961 643 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k 709 (1208)
....|+++.|.+..++ -++...|..+|......|+++.|..+|.+.-.. ..+..+|...|+.++..+
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 90 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHH
Confidence 3445666666665443 234667888888888888888888888765321 123334455555555544
Q ss_pred HHH
Q 000961 710 MLK 712 (1208)
Q Consensus 710 ~~~ 712 (1208)
..+
T Consensus 91 ~~~ 93 (136)
T 2fo7_A 91 YYQ 93 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 357
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.63 E-value=0.16 Score=55.69 Aligned_cols=154 Identities=12% Similarity=0.015 Sum_probs=94.1
Q ss_pred HHHHHHhCCChhhhhccccCcch--------hhHHHHhcCCHHHHHHHHHHh-------CChhHHHHHHHHHHHcCChhH
Q 000961 616 MIAYLQQKGFPEVALHFVKDERT--------RFNLALESGNIQIAVASAKEI-------DEKDHWYRLGVEALRQGNAGI 680 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~~~~~--------~f~lal~~g~~~~A~~~a~~~-------~~~~~w~~La~~al~~g~~~~ 680 (1208)
+...+...|.++.|+.-++.... .-.+....|+.+.|++..+++ +++..|-.+|...+.+|+++.
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~ 119 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDA 119 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34445566777777755432211 115555677888888877652 246778888888888888888
Q ss_pred HHHHHHhhcCcc---hhHHHHHhcCCHHHHHHHHHHHHHcCCchhhH-------HHHHhcCCHHHHHHHHHHcC----CC
Q 000961 681 VEYAYQRTKNFE---RLSFLYLITGNMDKLSKMLKIAEVKNDVMGQF-------HNALYLGDVKERVKILESAG----HL 746 (1208)
Q Consensus 681 Ae~~y~~~~d~~---~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~-------~~al~lgd~~~A~~i~~~~g----~~ 746 (1208)
|..+|.+-.+.+ .+..+|...|+.++..+..+.+.......... ..+.-.|++++|+.+|.+.- .-
T Consensus 120 Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 120 ALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 888888833332 23356777888888776555544333211111 11122378888888887652 12
Q ss_pred hHHH----HHHHhcCChHHHHHHHHHc
Q 000961 747 PLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 747 ~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
..++ .+....|.+++|.+..++.
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 2456778888888887763
No 358
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.63 E-value=0.35 Score=53.84 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=85.8
Q ss_pred HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHH
Q 000961 641 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKL 707 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl 707 (1208)
......|+++.|++..++. +++..|..+|......|+++.|..+|.+.-.. ..+..+|...|+.++.
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4456688888888887652 45778888898889999999999888876432 3456667778888887
Q ss_pred HHHHHHHHHcCCc-hh----------------hHHHHHhcCCHHHHHHHHHHcCC----Ch----HH----HHHHHhcCC
Q 000961 708 SKMLKIAEVKNDV-MG----------------QFHNALYLGDVKERVKILESAGH----LP----LA----YITASVHGL 758 (1208)
Q Consensus 708 ~k~~~~~~~~~~~-~~----------------~~~~al~lgd~~~A~~i~~~~g~----~~----~A----~~~a~~~g~ 758 (1208)
.+..+.+...... .. .+..+...|++++|++.|.++-. .. .+ ..+....|.
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 7665555433222 11 13346667889888888876421 11 11 134556788
Q ss_pred hHHHHHHHHHc
Q 000961 759 QDVAERLAAEL 769 (1208)
Q Consensus 759 ~~~a~~l~~~~ 769 (1208)
.+.|.+..+..
T Consensus 288 ~~~A~~~~~~~ 298 (359)
T 3ieg_A 288 PVEAIRICSEV 298 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887763
No 359
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.58 E-value=0.18 Score=52.75 Aligned_cols=129 Identities=12% Similarity=0.022 Sum_probs=90.1
Q ss_pred HHHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHH
Q 000961 641 NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKL 707 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl 707 (1208)
......|+++.|.+..++ -++...|..+|......|+++.|..+|.+.-.. ..+..+|...|+.++.
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 345567888888887664 235789999999999999999999999876332 3456677889999998
Q ss_pred HHHHHHHHHcCC-c----hhhHHHHHhcCCHHHHHHHHHHcCC----ChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 708 SKMLKIAEVKND-V----MGQFHNALYLGDVKERVKILESAGH----LPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 708 ~k~~~~~~~~~~-~----~~~~~~al~lgd~~~A~~i~~~~g~----~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
.+..+.+..... . .....++...|++++|++.|.++-. ...++ .+....|..+.|.+..+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 145 LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 877665544332 1 2233456678999999999876421 12222 3445678888888777763
No 360
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.58 E-value=0.36 Score=47.56 Aligned_cols=128 Identities=15% Similarity=0.075 Sum_probs=90.0
Q ss_pred HHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHH
Q 000961 642 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLS 708 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~ 708 (1208)
.....|+++.|.+..++. ++...|..+|......|+++.|..+|.+.-.. ..+..+|...|+.++..
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 96 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAV 96 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 345678888888887653 34778999999999999999999999886432 23455678899999987
Q ss_pred HHHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHcC----CChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 709 KMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAG----HLPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 709 k~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~g----~~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
+..+.+...... .....++...|++++|++.|.++- ....++ .+....|..++|.+..+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 97 PLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 766655443321 123345667899999999987742 111222 3456678888888887763
No 361
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.57 E-value=0.23 Score=54.64 Aligned_cols=171 Identities=13% Similarity=0.046 Sum_probs=117.3
Q ss_pred HHHHHhhcccccccchHHHHHHHhCC-Chhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHHh-----CC
Q 000961 599 YDHVMSMIRNSQLCGQAMIAYLQQKG-FPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKEI-----DE 661 (1208)
Q Consensus 599 ~~~~l~~i~~~~~~~~~i~~yl~~~g-~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~~-----~~ 661 (1208)
+.+++..-+.....-..+...+...| .++.|...+. +|. ..+ .+....|+++.|++..++. ++
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 158 (330)
T 3hym_B 79 SHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC 158 (330)
T ss_dssp HHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc
Confidence 55666554444333344566677778 7887776543 232 222 4566789999999887642 33
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHHHHHHHHHc-----------CCc--
Q 000961 662 KDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVK-----------NDV-- 720 (1208)
Q Consensus 662 ~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~~~~~-----------~~~-- 720 (1208)
...|..+|......|+++.|+.+|.++-.. ..+..+|...|+.++..+..+.+... ...
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 678899999999999999999999986543 35666788899999987766655442 111
Q ss_pred -hhhHHHHHhcCCHHHHHHHHHHcC----CChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 721 -MGQFHNALYLGDVKERVKILESAG----HLPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 721 -~~~~~~al~lgd~~~A~~i~~~~g----~~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
.....++..+|++++|++.|.++- ....++ .+....|..++|.+..++.
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 233455677899999999998752 112222 4456689999999999874
No 362
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.57 E-value=0.75 Score=50.24 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=96.5
Q ss_pred HHHHHhhccccccc----chHHHHHHHhCCChhhhhcccc-------Ccch---hh---HHHHhcCCHHHHHHHHHHhCC
Q 000961 599 YDHVMSMIRNSQLC----GQAMIAYLQQKGFPEVALHFVK-------DERT---RF---NLALESGNIQIAVASAKEIDE 661 (1208)
Q Consensus 599 ~~~~l~~i~~~~~~----~~~i~~yl~~~g~~e~Al~~~~-------~~~~---~f---~lal~~g~~~~A~~~a~~~~~ 661 (1208)
+++++..++..... -..+..|+...|..+.|+..++ +|.. .+ ......|+++.|++..+.-++
T Consensus 50 ~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~ 129 (291)
T 3mkr_A 50 YGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129 (291)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCS
T ss_pred HHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCC
Confidence 45555555433211 1236677888888888876543 2332 23 445678999999999988778
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhcCcc--h----hH----HHHHhcCCHHHHHHHHHHHHHc-CCc----hhhHHH
Q 000961 662 KDHWYRLGVEALRQGNAGIVEYAYQRTKNFE--R----LS----FLYLITGNMDKLSKMLKIAEVK-NDV----MGQFHN 726 (1208)
Q Consensus 662 ~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~--~----l~----~l~~~~g~~~kl~k~~~~~~~~-~~~----~~~~~~ 726 (1208)
+..|..+|+..+.+|+++.|++.|.++-..+ . +. .++...|+.++...+-+.+... .+. ...+.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~ 209 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8999999999999999999999999875332 1 11 2222246777766555444332 222 223345
Q ss_pred HHhcCCHHHHHHHHHHc
Q 000961 727 ALYLGDVKERVKILESA 743 (1208)
Q Consensus 727 al~lgd~~~A~~i~~~~ 743 (1208)
++.+|++++|+..|.++
T Consensus 210 ~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 77789999999999874
No 363
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.57 E-value=0.24 Score=51.40 Aligned_cols=128 Identities=19% Similarity=0.089 Sum_probs=81.8
Q ss_pred HHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhc-------
Q 000961 642 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLIT------- 701 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~------- 701 (1208)
..+..|++++|....++. +++..|..+|......|+++.|+.+|.+.=. +..+..+|...
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 93 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDR 93 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 346678888888877642 3467888888888888999888888877532 23345566666
Q ss_pred ----CCHHHHHHHHHHHHHcC-Cc----hhhHHHHHhcCCHHHHHHHHHHcCC---ChHH-H---HHHHhcCChHHHHHH
Q 000961 702 ----GNMDKLSKMLKIAEVKN-DV----MGQFHNALYLGDVKERVKILESAGH---LPLA-Y---ITASVHGLQDVAERL 765 (1208)
Q Consensus 702 ----g~~~kl~k~~~~~~~~~-~~----~~~~~~al~lgd~~~A~~i~~~~g~---~~~A-~---~~a~~~g~~~~a~~l 765 (1208)
|+.++.....+.+.... +. .....++..+|++++|+..|.++=. ...+ + .+....|..++|.+.
T Consensus 94 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~ 173 (217)
T 2pl2_A 94 ERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQ 173 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777665555443332 22 1223446667888888888876411 1112 1 234456788887777
Q ss_pred HHHc
Q 000961 766 AAEL 769 (1208)
Q Consensus 766 ~~~~ 769 (1208)
.+..
T Consensus 174 ~~~a 177 (217)
T 2pl2_A 174 YAKA 177 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7663
No 364
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=94.53 E-value=0.22 Score=48.50 Aligned_cols=122 Identities=12% Similarity=0.038 Sum_probs=85.8
Q ss_pred cccccHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCc
Q 000961 985 ALVFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDP 1064 (1208)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~ 1064 (1208)
++..++.........|+.++..|++++|+..|+.++..-| ++.. ..|-+|..+....+-
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P----~~~~------------~~~~lg~~~~~~g~~----- 86 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF----YNVD------------YIMGLAAIYQIKEQF----- 86 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHH------------HHHHHHHHHHHTTCH-----
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHH------------HHHHHHHHHHHHccH-----
Confidence 3445667777788999999999999999999999999888 4311 123344433321110
Q ss_pred hhhhHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 000961 1065 VRQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQA 1131 (1208)
Q Consensus 1065 ~r~~el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~~~ 1131 (1208)
... +.+|-.-..+.|.+-..-.+.|+ ..++.|+|..|...-++.|++.|. ++..++|++.+..
T Consensus 87 ~~A--i~~~~~al~l~P~~~~~~~~lg~-~~~~lg~~~eA~~~~~~al~l~~~-~~~~~~A~~ll~~ 149 (151)
T 3gyz_A 87 QQA--ADLYAVAFALGKNDYTPVFHTGQ-CQLRLKAPLKAKECFELVIQHSND-EKLKIKAQSYLDA 149 (151)
T ss_dssp HHH--HHHHHHHHHHSSSCCHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHhhCCCCcHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHh
Confidence 110 23344444556666555555555 456899999999999999999999 8999999998864
No 365
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.33 E-value=0.97 Score=45.47 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=78.3
Q ss_pred HhcCCHHHHHHHH-------HHhCC----hhHHHHHHHHHHHcCChhHHHHHHHhhcCc---------------chhHHH
Q 000961 644 LESGNIQIAVASA-------KEIDE----KDHWYRLGVEALRQGNAGIVEYAYQRTKNF---------------ERLSFL 697 (1208)
Q Consensus 644 l~~g~~~~A~~~a-------~~~~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~d~---------------~~l~~l 697 (1208)
...|+++.|.+.. +..++ ...|..+|......|+++.|+.+|.+.-.. ..+..+
T Consensus 37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 116 (203)
T 3gw4_A 37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATV 116 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 3455555555444 33333 356788899999999999998888775332 233456
Q ss_pred HHhcCCHHHHHHHHHHH----HHcCCch-------hhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHHHH
Q 000961 698 YLITGNMDKLSKMLKIA----EVKNDVM-------GQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAERLA 766 (1208)
Q Consensus 698 ~~~~g~~~kl~k~~~~~----~~~~~~~-------~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~l~ 766 (1208)
|...|+.++.....+.+ ...++.. ....++...|++++|++.|. .|+.+++..|.......+.
T Consensus 117 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~~~~~~~~~~~ 190 (203)
T 3gw4_A 117 ALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL------RARDIFAELEDSEAVNELM 190 (203)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH------HHHHHHHHcCCHHHHHHHH
Confidence 67788888866544433 3344432 23344666899999998875 4778888888877666666
Q ss_pred HHcC
Q 000961 767 AELG 770 (1208)
Q Consensus 767 ~~~~ 770 (1208)
..++
T Consensus 191 ~~~~ 194 (203)
T 3gw4_A 191 TRLN 194 (203)
T ss_dssp HHHH
T ss_pred hccc
Confidence 5543
No 366
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.29 E-value=0.25 Score=50.04 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=79.7
Q ss_pred HHhcCCHHHHHH---HHHHhC--ChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------------cchhHHHHHhcCC
Q 000961 643 ALESGNIQIAVA---SAKEID--EKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------------FERLSFLYLITGN 703 (1208)
Q Consensus 643 al~~g~~~~A~~---~a~~~~--~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------------~~~l~~l~~~~g~ 703 (1208)
++..|+++.|.+ .+.... ....|..+|......|+++.|...|.+.-. +..+..+|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356788888888 543322 356889999999999999999999987644 2345567888999
Q ss_pred HHHHHHHHHH----HHHcCC-c-------hhhHHHHHhcCCHHHHHHHHHHcC-------CCh-------HHHHHHHhcC
Q 000961 704 MDKLSKMLKI----AEVKND-V-------MGQFHNALYLGDVKERVKILESAG-------HLP-------LAYITASVHG 757 (1208)
Q Consensus 704 ~~kl~k~~~~----~~~~~~-~-------~~~~~~al~lgd~~~A~~i~~~~g-------~~~-------~A~~~a~~~g 757 (1208)
.++.....+. ....++ . .....++..+|++++|+..|.++- ... .--.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 9986644443 333452 2 122344667899999988877652 211 1113345567
Q ss_pred ChHHHHHHHHH
Q 000961 758 LQDVAERLAAE 768 (1208)
Q Consensus 758 ~~~~a~~l~~~ 768 (1208)
.+++|.+..++
T Consensus 162 ~~~~A~~~~~~ 172 (203)
T 3gw4_A 162 NLLEAQQHWLR 172 (203)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 77777666554
No 367
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.28 Score=51.71 Aligned_cols=128 Identities=14% Similarity=0.023 Sum_probs=85.4
Q ss_pred HHHHhcCCHHHHHHHHHHhC-----C-------hhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHH
Q 000961 641 NLALESGNIQIAVASAKEID-----E-------KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLS 708 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~~-----~-------~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~ 708 (1208)
......|+++.|++..++.- + ...|..+|......|+++.|..+|.++-....-..++...|+.++..
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHH
Confidence 44566788988888765421 1 57899999999999999999999998877666566677777777766
Q ss_pred HHHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHcC----CChHHH----HHHHhcCChHHHHHHHHH
Q 000961 709 KMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAG----HLPLAY----ITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 709 k~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~g----~~~~A~----~~a~~~g~~~~a~~l~~~ 768 (1208)
+..+.+...... .....++...|++++|++.|.++= ....++ .+....|.+++|.+..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555544333211 223344666788888888887652 111221 334556778888777776
No 368
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.28 E-value=8.5 Score=42.97 Aligned_cols=196 Identities=14% Similarity=0.107 Sum_probs=113.7
Q ss_pred CEEEEEEeCCCCEEEEEe------------cCCeEEEEECCC--CeEE-EEecc-----cccCEEEEEEEc--CCC-EEE
Q 000961 11 RVKGLSFHSKRPWILASL------------HSGVIQLWDYRM--GTLI-DRFDE-----HDGPVRGVHFHK--SQP-LFV 67 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~------------~dg~I~iWd~~~--g~~i-~~l~~-----h~~~V~~l~fsp--~~~-~La 67 (1208)
..-.++..|+|..+++++ .+|.|.++|..+ ++.. -.+.+ .......+.+.+ ++. +|.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 345677788875444431 689999999873 2221 11222 345678888877 354 344
Q ss_pred EE-EC--CCeEEEEECCCC----eEEEEEccC-CCCEEEEEEcCCCCEEEEEEC-----------------CCcEEEEEC
Q 000961 68 SG-GD--DYKIKVWNYKMH----RCLFTLLGH-LDYIRTVQFHHEYPWIVSASD-----------------DQTIRIWNW 122 (1208)
Q Consensus 68 sg-s~--Dg~I~vWd~~~~----~~~~~l~~h-~~~I~~v~fs~d~~~l~s~s~-----------------Dg~I~iwd~ 122 (1208)
++ .. +.+|.+|++... ..+.++.+. -.....+.+.++|.+.++... .|.|.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44 22 568888887643 223344332 236788999999987666531 244555554
Q ss_pred CCCeEEEEEecCCCCEEEEEEeeCCCEEEEEE-CCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEe
Q 000961 123 QSRTCISVLTGHNHYVMCASFHPKEDLVVSAS-LDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLE 201 (1208)
Q Consensus 123 ~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1208)
++.. .+...-...+.++|+|+++.++.+. ..+.|..|++....... ....+
T Consensus 211 --~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~------------------------~~~~~- 262 (355)
T 3sre_A 211 --NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT------------------------PLRVL- 262 (355)
T ss_dssp --TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE------------------------EEEEE-
T ss_pred --CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe------------------------cCEEE-
Confidence 3322 2222234578999999998877765 56889999986421110 00111
Q ss_pred ccCCCeEEEEEcC-CCCEEEEEeCC-CcEEEEECC
Q 000961 202 GHDRGVNWAAFHP-TLPLIVSGADD-RQVKLWRMN 234 (1208)
Q Consensus 202 ~h~~~V~~l~~sp-~g~~L~sgs~d-g~I~iwd~~ 234 (1208)
...+..-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 263 ~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 263 SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 1234567788888 58877766533 344444443
No 369
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.26 E-value=3.3 Score=45.91 Aligned_cols=142 Identities=15% Similarity=0.081 Sum_probs=85.8
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEeccc-ccCEEEEEEE--c-CCCEEEEE-ECCCeEEEEECCCCeEEEEEcc----C
Q 000961 22 PWILASLHSGVIQLWDYRMGTLIDRFDEH-DGPVRGVHFH--K-SQPLFVSG-GDDYKIKVWNYKMHRCLFTLLG----H 92 (1208)
Q Consensus 22 ~~Lasg~~dg~I~iWd~~~g~~i~~l~~h-~~~V~~l~fs--p-~~~~Lasg-s~Dg~I~vWd~~~~~~~~~l~~----h 92 (1208)
..+++++.||.|.-.|..+|+..-+++.. ..++....-. + ++..++.. +.||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888999999999999999999888654 1233221100 1 22333333 5899999999988865544431 2
Q ss_pred CCCEEE---EEE-----cCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC--CC-----EEEEEEe-----eCCCEEEE
Q 000961 93 LDYIRT---VQF-----HHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHN--HY-----VMCASFH-----PKEDLVVS 152 (1208)
Q Consensus 93 ~~~I~~---v~f-----s~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~--~~-----V~~l~~~-----p~~~~l~s 152 (1208)
..++.. ... +..+..+++++.+|.+...|..+|+.+..+.... +. ..|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 223331 000 0134578999999999999999999999886321 10 1111111 12356777
Q ss_pred EECCCeEEEEE
Q 000961 153 ASLDQTVRVWD 163 (1208)
Q Consensus 153 ~s~Dg~V~vwd 163 (1208)
+..+..+.+.+
T Consensus 171 g~~~y~v~~~~ 181 (339)
T 2be1_A 171 GKTIFELGIHS 181 (339)
T ss_dssp EEEEEECEECC
T ss_pred ecceEEEEEEC
Confidence 77666666655
No 370
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.24 E-value=0.67 Score=52.63 Aligned_cols=126 Identities=17% Similarity=0.087 Sum_probs=67.9
Q ss_pred HhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHHH
Q 000961 644 LESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKM 710 (1208)
Q Consensus 644 l~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k~ 710 (1208)
...|+++.|.+..++. ++...|..+|......|+++.|..+|.+.-.. ..+..+|...|+.++..+.
T Consensus 180 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455555555554331 23455666666666666666666666543211 2344556667777776655
Q ss_pred HHHHHHcCC-c----hhhHHHHHhcCCHHHHHHHHHHcCC----ChHH----HHHHHhcCChHHHHHHHHHc
Q 000961 711 LKIAEVKND-V----MGQFHNALYLGDVKERVKILESAGH----LPLA----YITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 711 ~~~~~~~~~-~----~~~~~~al~lgd~~~A~~i~~~~g~----~~~A----~~~a~~~g~~~~a~~l~~~~ 769 (1208)
.+.+..... . ......+...|++++|+..|.++-. ...+ ..+....|..++|.++.+++
T Consensus 260 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 554443322 1 1122335556888888777766421 1111 13445567777887777764
No 371
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.17 E-value=0.98 Score=50.78 Aligned_cols=92 Identities=8% Similarity=0.091 Sum_probs=44.4
Q ss_pred CCCEEEEEEC-CCeEEEEECCC--CeE--EEEEc-cCCCCEEEEEEcCCCCEEEEEEC-C---------CcEEEEECCCC
Q 000961 62 SQPLFVSGGD-DYKIKVWNYKM--HRC--LFTLL-GHLDYIRTVQFHHEYPWIVSASD-D---------QTIRIWNWQSR 125 (1208)
Q Consensus 62 ~~~~Lasgs~-Dg~I~vWd~~~--~~~--~~~l~-~h~~~I~~v~fs~d~~~l~s~s~-D---------g~I~iwd~~s~ 125 (1208)
++.+++.||. ...+.++|..+ .+. +..+. .....-..+.+ ++..++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5666666653 34688888863 222 22222 11111222222 4555666554 2 46889998876
Q ss_pred eEEEEEec--CCCCEEEEEEeeCCCEEEEEECC
Q 000961 126 TCISVLTG--HNHYVMCASFHPKEDLVVSASLD 156 (1208)
Q Consensus 126 ~~i~~l~~--h~~~V~~l~~~p~~~~l~s~s~D 156 (1208)
+-...-.. ....-.++.. .+++.++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 53322111 1111112222 466777777754
No 372
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.09 E-value=1.3 Score=49.82 Aligned_cols=58 Identities=7% Similarity=-0.050 Sum_probs=31.6
Q ss_pred cEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCC------cEEEEeCCCCeeEEEe
Q 000961 227 QVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDK------SIRVWDVTKRTGVQTF 286 (1208)
Q Consensus 227 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg------~I~vwd~~~~~~~~~~ 286 (1208)
.+.+||+.+.+...+..+......-.++. -++++++.|+.++ .|.++++.+++.+...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 47789988776544444443333333333 3677888888653 3556677777665543
No 373
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.03 E-value=0.43 Score=49.02 Aligned_cols=144 Identities=9% Similarity=-0.067 Sum_probs=83.9
Q ss_pred CCEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEE------EEe-c-ccccCEEEEEEEcCCCEEEEEECCCeEEEEECC
Q 000961 10 NRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLI------DRF-D-EHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYK 81 (1208)
Q Consensus 10 ~~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i------~~l-~-~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~ 81 (1208)
..++.++|||+|.+-++ .+|.+.-.+..++... ..+ . +-.. -.++.|.|+|.+.++ .||.|.-|+-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46789999999986666 7887766665442111 111 0 1111 478999999998887 55999888764
Q ss_pred CCeEE------EEE-ccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCe------EEEEEe-cCCCCEEEEEEeeCC
Q 000961 82 MHRCL------FTL-LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT------CISVLT-GHNHYVMCASFHPKE 147 (1208)
Q Consensus 82 ~~~~~------~~l-~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~------~i~~l~-~h~~~V~~l~~~p~~ 147 (1208)
+.... ..+ .+-=..+..|.|.|+|.+.+.. |+.+.-+...++. ....+. ...+.-..+.|.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 31110 111 1112467999999999865555 7775444333211 111111 333345557788888
Q ss_pred CEEEEEECCCeEEEEEC
Q 000961 148 DLVVSASLDQTVRVWDI 164 (1208)
Q Consensus 148 ~~l~s~s~Dg~V~vwdl 164 (1208)
.+.++. +| ++|..
T Consensus 194 ~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 194 TLFGVQ--GG--KFYED 206 (236)
T ss_dssp CEEEEE--TT--EEEEE
T ss_pred cEEEEe--CC--eEEec
Confidence 766555 66 44443
No 374
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.02 E-value=0.32 Score=54.83 Aligned_cols=153 Identities=13% Similarity=0.007 Sum_probs=98.3
Q ss_pred HHHHHhCCChhhhhcccc-----Ccch---hh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhH
Q 000961 617 IAYLQQKGFPEVALHFVK-----DERT---RF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGI 680 (1208)
Q Consensus 617 ~~yl~~~g~~e~Al~~~~-----~~~~---~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~ 680 (1208)
...+.+.|.++.|+..++ +|.. .+ ......|+++.|.+..++. ++...|..||......|+++.
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHH
Confidence 444555666666666544 2221 22 4556789999999887642 457899999999999999999
Q ss_pred HHHHHHhhcCcc------------------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-------hhhHHHHHhcCCHHH
Q 000961 681 VEYAYQRTKNFE------------------RLSFLYLITGNMDKLSKMLKIAEVKNDV-------MGQFHNALYLGDVKE 735 (1208)
Q Consensus 681 Ae~~y~~~~d~~------------------~l~~l~~~~g~~~kl~k~~~~~~~~~~~-------~~~~~~al~lgd~~~ 735 (1208)
|..+|.++-... .+..+|...|+.++..++.+.+...... .....++...|++++
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~ 231 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNR 231 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHH
Confidence 999998863321 2355777788888877666655444322 223345667799999
Q ss_pred HHHHHHHcCC----ChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 736 RVKILESAGH----LPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 736 A~~i~~~~g~----~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
|++.|.++=. ...++ .+....|..++|.+..++.
T Consensus 232 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 232 AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999877421 11221 3455678888888888763
No 375
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.90 E-value=0.4 Score=53.33 Aligned_cols=28 Identities=7% Similarity=-0.014 Sum_probs=21.1
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHcc
Q 000961 997 LKASYKATTTGKFTEALRLFLSILHTIP 1024 (1208)
Q Consensus 997 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 1024 (1208)
+..|.-+...|++.+|+..|+.++..-|
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3445566678888888888888887766
No 376
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.88 E-value=0.5 Score=58.84 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=62.3
Q ss_pred HHHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHH---h--CChhHHHHHHHHHHHcCChh
Q 000961 616 MIAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKE---I--DEKDHWYRLGVEALRQGNAG 679 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~---~--~~~~~w~~La~~al~~g~~~ 679 (1208)
+...+.+.|..++|+..++ +|+ ..+ .+..+.|++++|++..++ + ++...|..||.....+|+++
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~ 94 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQ 94 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 4556677788887776654 332 222 334557888888777553 2 34677888888888888888
Q ss_pred HHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHH
Q 000961 680 IVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIA 714 (1208)
Q Consensus 680 ~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~ 714 (1208)
.|+.+|+++=. +..+..+|...|+.++..+.-+.+
T Consensus 95 ~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 95 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888877421 233445566666666655444443
No 377
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.81 E-value=0.34 Score=51.73 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=45.7
Q ss_pred HHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcC-----------cchhHHHHHhcCCHH
Q 000961 642 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN-----------FERLSFLYLITGNMD 705 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d-----------~~~l~~l~~~~g~~~ 705 (1208)
.....|+++.|++..++. +++..|..+|......|+++.|..+|.+.-. +..+..+|...|+.+
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 345567777777776542 3456888899988889999999888887643 123344445555555
Q ss_pred HHHHHHH
Q 000961 706 KLSKMLK 712 (1208)
Q Consensus 706 kl~k~~~ 712 (1208)
+..+..+
T Consensus 92 ~A~~~~~ 98 (272)
T 3u4t_A 92 LAIQQYQ 98 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 378
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=93.78 E-value=0.38 Score=52.75 Aligned_cols=126 Identities=12% Similarity=-0.038 Sum_probs=87.0
Q ss_pred HHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHH
Q 000961 643 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k 709 (1208)
....|+++.|.+..++. ++...|..+|......|+++.|..+|.++-. +..+..+|...|+.++..+
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 55677888888776642 3578899999999999999999999987532 3455667888999999877
Q ss_pred HHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHcCC----------------ChHH----HHHHHhcCChHHHHH
Q 000961 710 MLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGH----------------LPLA----YITASVHGLQDVAER 764 (1208)
Q Consensus 710 ~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~g~----------------~~~A----~~~a~~~g~~~~a~~ 764 (1208)
..+.+...... .....++..+|++++|++.|.++-. ...+ ..+....|..++|.+
T Consensus 228 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 66655443321 2233456778999999998876411 1112 234456777887777
Q ss_pred HHHH
Q 000961 765 LAAE 768 (1208)
Q Consensus 765 l~~~ 768 (1208)
+.+.
T Consensus 308 ~~~~ 311 (327)
T 3cv0_A 308 TYAQ 311 (327)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7653
No 379
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.76 E-value=1.5 Score=46.83 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=84.3
Q ss_pred cCCHHHHHHHHH---HhCChhHHHHHHHHHHH----cCChhHHHHHHHhhcCc------chhHHHHHh----cCCHHHHH
Q 000961 646 SGNIQIAVASAK---EIDEKDHWYRLGVEALR----QGNAGIVEYAYQRTKNF------ERLSFLYLI----TGNMDKLS 708 (1208)
Q Consensus 646 ~g~~~~A~~~a~---~~~~~~~w~~La~~al~----~g~~~~Ae~~y~~~~d~------~~l~~l~~~----~g~~~kl~ 708 (1208)
.++++.|++..+ +++++..|..||..... .++++.|..+|++.-+. ..+..+|.. .|+.++..
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHH
Confidence 788888877755 46788889999999999 99999999999876433 234456666 88888888
Q ss_pred HHHHHHHHcCCchhhHHH---HHh----cCCHHHHHHHHHHc---CCChHHHH---HHHh----cCChHHHHHHHHH
Q 000961 709 KMLKIAEVKNDVMGQFHN---ALY----LGDVKERVKILESA---GHLPLAYI---TASV----HGLQDVAERLAAE 768 (1208)
Q Consensus 709 k~~~~~~~~~~~~~~~~~---al~----lgd~~~A~~i~~~~---g~~~~A~~---~a~~----~g~~~~a~~l~~~ 768 (1208)
+.-+.+...++....... +.. .+++++|+..|.++ +.....+. +... .+..++|.+..+.
T Consensus 135 ~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 135 EYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 777777776655433222 333 78999999888764 22222222 2233 5677777777665
No 380
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.70 E-value=0.28 Score=61.11 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=55.6
Q ss_pred HHHhcCCHHHHHHHHHH---h--CChhHHHHHHHHHHHcCChhHHHHHHHhhc--------CcchhHHHHHhcCCHHHHH
Q 000961 642 LALESGNIQIAVASAKE---I--DEKDHWYRLGVEALRQGNAGIVEYAYQRTK--------NFERLSFLYLITGNMDKLS 708 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~---~--~~~~~w~~La~~al~~g~~~~Ae~~y~~~~--------d~~~l~~l~~~~g~~~kl~ 708 (1208)
+..+.|++++|.+..++ + ++...|..||.....+|+++.|+.+|+++= -+..+..+|...|+.++..
T Consensus 18 ~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~ 97 (723)
T 4gyw_A 18 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL 97 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34456677766666543 2 345666777777777777777777776642 1223444566667766655
Q ss_pred HHHHHHHHc-CCchh----hHHHHHhcCCHHHHHHHHHH
Q 000961 709 KMLKIAEVK-NDVMG----QFHNALYLGDVKERVKILES 742 (1208)
Q Consensus 709 k~~~~~~~~-~~~~~----~~~~al~lgd~~~A~~i~~~ 742 (1208)
+.-+.+... .+... ...++..+|++++|++.|.+
T Consensus 98 ~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 98 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444443322 22221 12234556777777666654
No 381
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.67 E-value=0.57 Score=50.89 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHcc
Q 000961 996 KLKASYKATTTGKFTEALRLFLSILHTIP 1024 (1208)
Q Consensus 996 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 1024 (1208)
....|..++..|++.+|+..|+.++..-|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p 35 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNP 35 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45677888888888888888888888766
No 382
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.66 E-value=1.1 Score=46.11 Aligned_cols=176 Identities=10% Similarity=0.085 Sum_probs=96.2
Q ss_pred CCEEEEEECCCcEEEEECCCCe------EEEEEec-CCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCc
Q 000961 105 YPWIVSASDDQTIRIWNWQSRT------CISVLTG-HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADD 177 (1208)
Q Consensus 105 ~~~l~s~s~Dg~I~iwd~~s~~------~i~~l~~-h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~ 177 (1208)
...|+....| +++.=...++. ....+.. -=..+..++|+|++.+.++ .+|.+.-.+..+....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~------- 73 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND------- 73 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-------
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-------
Confidence 4456666767 66665555443 1222221 1246779999998885555 6777665554331110
Q ss_pred ceeeccccccccccccceEEEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeE---EEeecCcCCCe
Q 000961 178 ILRLSQMNTDLFGGVDAVVKYVLE-GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--AWE---VDTLRGHMNNV 251 (1208)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~--~~~---~~~l~~h~~~V 251 (1208)
..++. . ..+-. +-. ....+.|.|+|.+.++ .||.|.-++..+.. .|. ...-..--..+
T Consensus 74 ---------~W~~s-~---t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~ 137 (236)
T 1tl2_A 74 ---------NWMGR-A---KKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGF 137 (236)
T ss_dssp ---------CHHHH-C---EEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGE
T ss_pred ---------ccccc-c---cEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCce
Confidence 00110 0 00000 111 1467899999987777 56988888764322 110 00111112467
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCe------eEEEee-cCCCCEEEEEEeCCCCEEEEE
Q 000961 252 SCVMFHAKQDIIVSNSEDKSIRVWDVTKRT------GVQTFR-REHDRFWILASHPEMNLLAAG 308 (1208)
Q Consensus 252 ~~l~~sp~g~~l~sgs~dg~I~vwd~~~~~------~~~~~~-~~~~~i~~la~sp~~~~la~g 308 (1208)
..+.+.|+|.+.++. |+.+.-+...+.. ....+- ..-.....+.+.+++.+.++.
T Consensus 138 ~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 138 KFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp EEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred EEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 999999999987777 7776544333211 011111 233345667788898888776
No 383
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.65 E-value=2.5 Score=49.39 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=40.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EEec------CCCCEEEEEEeeC---CCEEEEEE
Q 000961 92 HLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCIS--VLTG------HNHYVMCASFHPK---EDLVVSAS 154 (1208)
Q Consensus 92 h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~--~l~~------h~~~V~~l~~~p~---~~~l~s~s 154 (1208)
.....+.|+|.|+|..+++-...+.|++++..+++... .+.. ..+....++|+|+ +..|+++.
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 34567899999999866654433578888865554322 2221 2456789999995 55555544
No 384
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.61 E-value=1.1 Score=50.89 Aligned_cols=155 Identities=16% Similarity=0.089 Sum_probs=104.7
Q ss_pred HHHHHHHhCCChhhhhcccc-----Ccch---hh---HHHHhcCCHHHHHHHHHH---h--CChhHHHHHHHHHHHcCCh
Q 000961 615 AMIAYLQQKGFPEVALHFVK-----DERT---RF---NLALESGNIQIAVASAKE---I--DEKDHWYRLGVEALRQGNA 678 (1208)
Q Consensus 615 ~i~~yl~~~g~~e~Al~~~~-----~~~~---~f---~lal~~g~~~~A~~~a~~---~--~~~~~w~~La~~al~~g~~ 678 (1208)
.+...+.+.|..+.|+..++ +|.. .+ ......|++++|.+..++ + +++..|..+|.....+|++
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 253 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCH
Confidence 34455566777777666543 2321 11 345567999999887653 2 3578899999999999999
Q ss_pred hHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHcCC
Q 000961 679 GIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESAGH 745 (1208)
Q Consensus 679 ~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~g~ 745 (1208)
+.|+.+|.++-. +..+..+|...|+.++..+..+.+...... .....++...|++++|++.|.++=.
T Consensus 254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999988643 234566778899999987766655443221 1233446668999999999988643
Q ss_pred C----hHHH----HHHHhcCChHHHHHHHHHc
Q 000961 746 L----PLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 746 ~----~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
. ..++ .+....|..++|.+..+++
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 1121 3345678888898888764
No 385
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.56 E-value=2.7 Score=52.12 Aligned_cols=207 Identities=11% Similarity=0.129 Sum_probs=101.5
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCceeEEE-e-----ecCcCCCeEEEEEccCCCEEEEEeCCC------cEEEEeC
Q 000961 214 PTLPLIVSGADD----RQVKLWRMNETKAWEVD-T-----LRGHMNNVSCVMFHAKQDIIVSNSEDK------SIRVWDV 277 (1208)
Q Consensus 214 p~g~~L~sgs~d----g~I~iwd~~~~~~~~~~-~-----l~~h~~~V~~l~~sp~g~~l~sgs~dg------~I~vwd~ 277 (1208)
.++.+++.|+.+ ..+.+||..+.+...+. . .......-..+.+..++.+++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 46888998877643333 2 111122223333322677778877543 4788888
Q ss_pred CCCeeEEEeecCCCCEE-EEEEeCCCCEEEEEECCCeeeEeeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEe-
Q 000961 278 TKRTGVQTFRREHDRFW-ILASHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIP- 355 (1208)
Q Consensus 278 ~~~~~~~~~~~~~~~i~-~la~sp~~~~la~g~~~gi~v~~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~- 355 (1208)
.+.+-...-.....+.. +.+...++.+++.|+.++ .+.+.+||..+..-..+..
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~------------------------~~~v~~yd~~t~~W~~~~~~ 531 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE------------------------GPAMLLYNVTEEIFKDVTPK 531 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCS------------------------SCSEEEEETTTTEEEECCCS
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCC------------------------CCCEEEEECCCCceEEccCC
Confidence 77544332111111111 122223556655554322 1156778877754433221
Q ss_pred --ecCCCCCCCCcCCeEEEEcCCCCEEEEEEecC------CCEEEEEEccCCCC-----CCCcccccccCCceEEEEEEe
Q 000961 356 --IRRPGSTSLNQSPRTLSYSPTENAVLICSDVD------GGSYELYVIPKDSI-----GRGDSVQDAKKGLGGSAIFIA 422 (1208)
Q Consensus 356 --~~~~~~~~~~~~i~~l~~spdg~~llv~~~~~------~g~v~l~~l~~~~~-----~~~~~~~~~~~~~i~~~~fs~ 422 (1208)
..... . ....+.+..+...+.+.+|.. ...+..|++....- ...............+++...
T Consensus 532 g~~p~~r--~---~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~ 606 (695)
T 2zwa_A 532 DEFFQNS--L---VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT 606 (695)
T ss_dssp SGGGGSC--C---BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE
T ss_pred CCCCCcc--c---ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC
Confidence 11100 1 233466666645566666542 14678888776541 000001000111122344445
Q ss_pred CCcEEEEEcC--------CCEEEEEecCCceeeee
Q 000961 423 RNRFAVLDKS--------SNQVLVKNLKNEVVKKS 449 (1208)
Q Consensus 423 d~~~l~~~~~--------dg~I~Iwdl~~~~~~~l 449 (1208)
++++++.|+. ...+.+||+....-..+
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~ 641 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI 641 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEEC
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEe
Confidence 4788777763 24588888875544333
No 386
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.51 E-value=3 Score=45.89 Aligned_cols=186 Identities=11% Similarity=0.125 Sum_probs=93.0
Q ss_pred EEEEEECCCeEEEEECCCCeEEEE-EccCCCCEEEEEEcCCCCEEEEEEC----CC-------cEEEEECCCCeEEEE--
Q 000961 65 LFVSGGDDYKIKVWNYKMHRCLFT-LLGHLDYIRTVQFHHEYPWIVSASD----DQ-------TIRIWNWQSRTCISV-- 130 (1208)
Q Consensus 65 ~Lasgs~Dg~I~vWd~~~~~~~~~-l~~h~~~I~~v~fs~d~~~l~s~s~----Dg-------~I~iwd~~s~~~i~~-- 130 (1208)
+++.|+. .+.+||..+++.... +..............++..++.|+. ++ .+.+||..+++-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444543 488999988775442 2211222233334556777777773 11 277888877654322
Q ss_pred EecCCCCEEEEEEeeCCCEEEEEECC-------CeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEecc
Q 000961 131 LTGHNHYVMCASFHPKEDLVVSASLD-------QTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGH 203 (1208)
Q Consensus 131 l~~h~~~V~~l~~~p~~~~l~s~s~D-------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 203 (1208)
+...... .+++.. ++..++.|+.+ ..+.+||..+.+-....+.. . ...+|
T Consensus 96 ~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---------~------------~r~~~ 152 (318)
T 2woz_A 96 LPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP---------I------------KVYGH 152 (318)
T ss_dssp BSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS---------S------------CEESC
T ss_pred CCccccc-cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC---------C------------ccccc
Confidence 1111111 112222 56677777653 24777887765433211100 0 01112
Q ss_pred CCCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCC-----CcE
Q 000961 204 DRGVNWAAFHPTLPLIVSGAD------DRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSED-----KSI 272 (1208)
Q Consensus 204 ~~~V~~l~~sp~g~~L~sgs~------dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~d-----g~I 272 (1208)
+++. .++.+++.|+. ...+.+||..+.+-..+..+........++.+ ++.+++.|+.+ ..+
T Consensus 153 -----~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 224 (318)
T 2woz_A 153 -----NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASV 224 (318)
T ss_dssp -----EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEE
T ss_pred -----EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceE
Confidence 1111 35566666653 24589999988764333333222222223332 56777777653 246
Q ss_pred EEEeCCCCeeE
Q 000961 273 RVWDVTKRTGV 283 (1208)
Q Consensus 273 ~vwd~~~~~~~ 283 (1208)
.+||..+.+-.
T Consensus 225 ~~yd~~~~~W~ 235 (318)
T 2woz_A 225 EAFDLKTNKWE 235 (318)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCeEE
Confidence 78888766543
No 387
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.47 E-value=0.3 Score=54.88 Aligned_cols=169 Identities=11% Similarity=-0.047 Sum_probs=78.1
Q ss_pred HHHHHhhcccccccchHHHHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHHh-----CCh
Q 000961 599 YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKEI-----DEK 662 (1208)
Q Consensus 599 ~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~~-----~~~ 662 (1208)
+.+++..-+.....-..+...+.+.|.++.|+..+. +|. ..+ ......|+++.|++..++. ++.
T Consensus 87 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 87 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 445544433332222334445556666666665443 221 111 3344566777666665431 111
Q ss_pred hHHH----------------HHHHHHHHcCChhHHHHHHHhhcC----------cchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 663 DHWY----------------RLGVEALRQGNAGIVEYAYQRTKN----------FERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 663 ~~w~----------------~La~~al~~g~~~~Ae~~y~~~~d----------~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
..|. .++... ..|+++.|..+|.++-. +..+..+|...|+.++..+..+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2221 233332 56666666666655321 12234455556666665544443322
Q ss_pred cC-Cc----hhhHHHHHhcCCHHHHHHHHHHcC----CChHHH----HHHHhcCChHHHHHHHHH
Q 000961 717 KN-DV----MGQFHNALYLGDVKERVKILESAG----HLPLAY----ITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 717 ~~-~~----~~~~~~al~lgd~~~A~~i~~~~g----~~~~A~----~~a~~~g~~~~a~~l~~~ 768 (1208)
.. +. .....++..+|++++|+..|.++= ....++ .+....|.+++|.+..++
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 21 11 112234555677777777666541 111111 233456666666666554
No 388
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.44 E-value=0.53 Score=48.20 Aligned_cols=129 Identities=9% Similarity=0.026 Sum_probs=92.9
Q ss_pred HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhc-CCHHH
Q 000961 641 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLIT-GNMDK 706 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~-g~~~k 706 (1208)
......|+++.|.+..++. ++...|..+|......|+++.|..+|.++-.. ..+..+|... |+.++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHH
Confidence 4566789999999887642 45789999999999999999999999886432 2355677888 99999
Q ss_pred HHHHHHHHHHcCCc-------hhhHHHHHhcCCHHHHHHHHHHcCC----ChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 707 LSKMLKIAEVKNDV-------MGQFHNALYLGDVKERVKILESAGH----LPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 707 l~k~~~~~~~~~~~-------~~~~~~al~lgd~~~A~~i~~~~g~----~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
..+..+.+...+.. .....++...|++++|+..|.++-. ...++ .+....|..++|.+..+..
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88877766552111 2233456778999999999876421 12222 3445678889898888763
No 389
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.38 E-value=0.73 Score=51.60 Aligned_cols=154 Identities=12% Similarity=0.008 Sum_probs=103.8
Q ss_pred HHHHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHH---h--CChhHHHHHHHHHHHcCCh
Q 000961 615 AMIAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKE---I--DEKDHWYRLGVEALRQGNA 678 (1208)
Q Consensus 615 ~i~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~---~--~~~~~w~~La~~al~~g~~ 678 (1208)
.....+.+.|.++.|+..+. +|. ..+ ......|+++.|++..++ + +++..|..+|......|++
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 34556677788888877554 222 222 456678999999988764 2 4578999999999999999
Q ss_pred hHHHHHHHhhcCcc------------------------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-------hhhHHHH
Q 000961 679 GIVEYAYQRTKNFE------------------------RLSFLYLITGNMDKLSKMLKIAEVKNDV-------MGQFHNA 727 (1208)
Q Consensus 679 ~~Ae~~y~~~~d~~------------------------~l~~l~~~~g~~~kl~k~~~~~~~~~~~-------~~~~~~a 727 (1208)
+.|...|.++-... .+..++ ..|+.++.....+.+...... .....++
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 99999998753321 244444 778888776665554333322 2234456
Q ss_pred HhcCCHHHHHHHHHHcCC----ChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 728 LYLGDVKERVKILESAGH----LPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 728 l~lgd~~~A~~i~~~~g~----~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
...|++++|+..|.++-. ...++ .+....|..++|.+..++.
T Consensus 228 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778999999999877521 12222 3455678899998888763
No 390
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.15 E-value=0.23 Score=55.98 Aligned_cols=171 Identities=11% Similarity=-0.033 Sum_probs=94.3
Q ss_pred HHHHHhhcccccccchHHHHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHHhC-----Ch
Q 000961 599 YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKEID-----EK 662 (1208)
Q Consensus 599 ~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~~~-----~~ 662 (1208)
|.+++..-+.....-..+...+.+.|.++.|+..+. +|. ..+ ......|+++.|++..++.- ++
T Consensus 88 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 167 (365)
T 4eqf_A 88 MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK 167 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccch
Confidence 556665544433333445566677788777776554 232 122 34556788888887765421 12
Q ss_pred hHH----------HHHHHHHHHcCChhHHHHHHHhhcC----------cchhHHHHHhcCCHHHHHHHHHHHHHcCCc--
Q 000961 663 DHW----------YRLGVEALRQGNAGIVEYAYQRTKN----------FERLSFLYLITGNMDKLSKMLKIAEVKNDV-- 720 (1208)
Q Consensus 663 ~~w----------~~La~~al~~g~~~~Ae~~y~~~~d----------~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~-- 720 (1208)
..| ..+|......|+++.|..+|.++-. +..+..+|...|+.++..+..+.+......
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 247 (365)
T 4eqf_A 168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY 247 (365)
T ss_dssp CC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 223 3347777778888888888876532 233455677778888776665554433221
Q ss_pred ---hhhHHHHHhcCCHHHHHHHHHHcCC----ChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 721 ---MGQFHNALYLGDVKERVKILESAGH----LPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 721 ---~~~~~~al~lgd~~~A~~i~~~~g~----~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
.....++..+|++++|+..|.++=. ...++ .+....|..++|.+..++.
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2223445667888888888876421 12222 3445667777777777653
No 391
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.65 Score=48.70 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=83.8
Q ss_pred HHhcCCHHHHHHHHHHh----CChhHHHHHHHHHHHcCChhHHHHHHHhhcC---------------cchhHHHHHhcCC
Q 000961 643 ALESGNIQIAVASAKEI----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN---------------FERLSFLYLITGN 703 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d---------------~~~l~~l~~~~g~ 703 (1208)
.+..|+++.|++..++. +++..|..+|......|+++.|..+|.+.-. +..+..+|...|+
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 44556666666655432 6788999999999999999999999987533 2345556777888
Q ss_pred HHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCCh--------HHHHHHHhcCChHHHHHHHHH
Q 000961 704 MDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLP--------LAYITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 704 ~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~--------~A~~~a~~~g~~~~a~~l~~~ 768 (1208)
.++..+..+.+...... ...+..+|++++|++.|.+.-... .-..+....|.+++|.+..+.
T Consensus 95 ~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEHRT---ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCch---hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88877666655443322 345677788888888887643321 111334566788888887776
No 392
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.05 E-value=0.73 Score=42.99 Aligned_cols=81 Identities=6% Similarity=-0.054 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHH---h--CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 642 LALESGNIQIAVASAKE---I--DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~---~--~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
.+.+.|+++.|++..++ + +++..|..+|......|+++.|..+|.++=.. ...+.+-...+
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l------ 87 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--------DSKFIKGYIRK------ 87 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--------hhhhhHHHHHH------
Confidence 34556677777666443 2 35788889999999999999998888765221 11122222222
Q ss_pred cCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 717 KNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 717 ~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|++.|.++
T Consensus 88 -------g~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 88 -------AACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHH
T ss_pred -------HHHHHHCCCHHHHHHHHHHH
Confidence 34567778888888887654
No 393
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.04 E-value=0.65 Score=53.83 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=98.6
Q ss_pred HHHHhCCChhhhhcccc-----Cc---chhh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHH
Q 000961 618 AYLQQKGFPEVALHFVK-----DE---RTRF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIV 681 (1208)
Q Consensus 618 ~yl~~~g~~e~Al~~~~-----~~---~~~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~A 681 (1208)
..+.+.|..+.|+..+. +| ...+ .+...+|+++.|++..++. +++..|..+|......|+++.|
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33445566666665543 12 1122 4566788888888877653 4678899999999999999999
Q ss_pred HHHHHhhcCc----ch----------------hHHHHHhcCCHHHHHHHHHHHHHcCCc---------hhhHHHHHhcCC
Q 000961 682 EYAYQRTKNF----ER----------------LSFLYLITGNMDKLSKMLKIAEVKNDV---------MGQFHNALYLGD 732 (1208)
Q Consensus 682 e~~y~~~~d~----~~----------------l~~l~~~~g~~~kl~k~~~~~~~~~~~---------~~~~~~al~lgd 732 (1208)
..+|.++-.. .. +..+|...|+.++..+..+.+...... .....++..+|+
T Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC
Confidence 9988876322 11 145677788888877665554333221 112345667799
Q ss_pred HHHHHHHHHHcC----CChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 733 VKERVKILESAG----HLPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 733 ~~~A~~i~~~~g----~~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
+++|+..|.++- ....++ .+...+|.+++|.+..+++
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999988752 122222 4456789999999888875
No 394
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=93.02 E-value=0.56 Score=44.62 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=55.7
Q ss_pred HHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHc
Q 000961 643 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVK 717 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~ 717 (1208)
.+..|+++.|.+..+.. +++..|..||......|+++.|..+|.+.-..+ -.+..-...+
T Consensus 28 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l------- 92 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--------INEPRFPFHA------- 92 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHH-------
T ss_pred HHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHH-------
Confidence 45578888888776642 468899999999999999999999998763221 1122212122
Q ss_pred CCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 718 NDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 718 ~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|++.|.++
T Consensus 93 ------g~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 93 ------AECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp ------HHHHHHTTCHHHHHHHHHHH
T ss_pred ------HHHHHHcCCHHHHHHHHHHH
Confidence 34667788888888887654
No 395
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.95 E-value=0.58 Score=45.13 Aligned_cols=81 Identities=15% Similarity=0.045 Sum_probs=56.1
Q ss_pred HHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 642 LALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
.....|+++.|.+..+. -+++..|..||......|+++.|..+|.++-..+ -.+..-...+
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l------ 95 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--------IXEPRFPFHA------ 95 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHH------
T ss_pred HHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCchHHHHH------
Confidence 34557888888877654 2467899999999999999999999998763211 1122222222
Q ss_pred cCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 717 KNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 717 ~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|++.|.++
T Consensus 96 -------g~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 96 -------AECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHH
T ss_pred -------HHHHHHcCCHHHHHHHHHHH
Confidence 34677789999998888664
No 396
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=92.88 E-value=0.83 Score=47.32 Aligned_cols=102 Identities=14% Similarity=0.034 Sum_probs=53.7
Q ss_pred HhcCCHHHHHHHHHH----h--CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHH
Q 000961 644 LESGNIQIAVASAKE----I--DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 644 l~~g~~~~A~~~a~~----~--~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k 709 (1208)
+..|+++.|++..++ . ++...|..+|......|+++.|..+|.+.-. +..+..+|...|+.++..+
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHH
Confidence 344555555554432 1 3445566667777777777777766666422 2234445555566655544
Q ss_pred HHHHHHHcCCc------------hhhHHHHHhcCCHHHHHHHHHHcCC
Q 000961 710 MLKIAEVKNDV------------MGQFHNALYLGDVKERVKILESAGH 745 (1208)
Q Consensus 710 ~~~~~~~~~~~------------~~~~~~al~lgd~~~A~~i~~~~g~ 745 (1208)
..+.+...... .....++..+|++++|++.|.++=.
T Consensus 98 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 98 TLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 44333222111 1122345556777777777776643
No 397
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.76 E-value=0.75 Score=43.87 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCh----hHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 649 IQIAVASAKEIDEK----DHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 649 ~~~A~~~a~~~~~~----~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
+++|++.++...++ ..+..+|......|+++.|...|.+.
T Consensus 32 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 32 HEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444442 36777888888888888888887764
No 398
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.41 E-value=0.64 Score=50.89 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=67.9
Q ss_pred HHHhcCCHHHHHHHHHHh-------CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcch-------hHHH-------HHh
Q 000961 642 LALESGNIQIAVASAKEI-------DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFER-------LSFL-------YLI 700 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~~-------~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~-------l~~l-------~~~ 700 (1208)
.+...|+++.|++.+.+. ++.++...+++.++..|+.+.|.+.++++.+.+. -..+ .+.
T Consensus 109 i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 109 AQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHH
Confidence 344579999999999887 6778888999999999999999999977655442 2222 233
Q ss_pred cC--CHHHH-HHHHHHHHHcCC---chhhHHHHHhcCCHHHHHHHHHH
Q 000961 701 TG--NMDKL-SKMLKIAEVKND---VMGQFHNALYLGDVKERVKILES 742 (1208)
Q Consensus 701 ~g--~~~kl-~k~~~~~~~~~~---~~~~~~~al~lgd~~~A~~i~~~ 742 (1208)
+| +.+.. .-..+..+.-++ ......+++.+|++++|++.+..
T Consensus 189 ~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34 33333 333333333333 22334467788999999999854
No 399
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.35 E-value=0.9 Score=49.49 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=34.0
Q ss_pred HHhcCCHHHHHHHHH-------HhCC----hhHHHHHHHHHHHc-CChhHHHHHHHhhc
Q 000961 643 ALESGNIQIAVASAK-------EIDE----KDHWYRLGVEALRQ-GNAGIVEYAYQRTK 689 (1208)
Q Consensus 643 al~~g~~~~A~~~a~-------~~~~----~~~w~~La~~al~~-g~~~~Ae~~y~~~~ 689 (1208)
....|+++.|++..+ ..++ ...|..||.....+ |+++.|..+|+++-
T Consensus 87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 445677777666543 3333 34788999999997 99999999998763
No 400
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.30 E-value=0.95 Score=46.12 Aligned_cols=100 Identities=18% Similarity=0.091 Sum_probs=53.3
Q ss_pred HhcCCHHHHHHHHHHhC--ChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHHHHHH
Q 000961 644 LESGNIQIAVASAKEID--EKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKI 713 (1208)
Q Consensus 644 l~~g~~~~A~~~a~~~~--~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~ 713 (1208)
...|+++.|++..++.- ++..|..+|......|+++.|..+|.+.-.. ..+..+|...|+.++..+..+.
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp HHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34566666666655432 3556667777777777777777766654221 2233444555555555444433
Q ss_pred HHHcCC---------------------chhhHHHHHhcCCHHHHHHHHHHc
Q 000961 714 AEVKND---------------------VMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 714 ~~~~~~---------------------~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
+..... ......++..+|++++|++.|.++
T Consensus 97 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 97 ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 332110 011223455667777777776654
No 401
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.27 E-value=1.5 Score=46.53 Aligned_cols=195 Identities=16% Similarity=0.133 Sum_probs=103.9
Q ss_pred cchHHHHHHcCCHHHHHHHHHhhcCcccccccHHHH----HHHHhcceeeeccCCCCCChhhhhhcCCCCCCCCCCCCCC
Q 000961 909 SSLAAEHAAAGNFDTAMRLLNRQLGIRNFAPLKSMF----LDLHSGSHTYLRAFSSAPVIPLAVERGWNESASPNVRGPP 984 (1208)
Q Consensus 909 ~~~~~~~~~~g~f~~a~~~l~~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 984 (1208)
-..+-.+...|+|+.|+..+.+-+..-.-.|+.+.. -.+|...+-+-.++. .+.-.+... ++. |
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~---~~~~~l~~~-p~~--------~ 86 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAAS---EYERFIQIY-QID--------P 86 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHC-TTC--------T
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHH---HHHHHHHHC-CCC--------c
Confidence 346778899999999999999877654444433211 122222221111111 112222222 111 1
Q ss_pred cccccHHHHHHHHHHHHHhcc--------cCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHH------HHHH
Q 000961 985 ALVFNFSQLEEKLKASYKATT--------TGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKE------YVLG 1050 (1208)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~ 1050 (1208)
.. ....+..|..++. .|++.+|+..|+.++..-| ++. ...++...+..+++ |.+|
T Consensus 87 ~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p----~~~-~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 87 RV------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP----NHE-LVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp TH------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT----TCT-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc----Cch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2234566777777 9999999999999999888 432 22233333332332 4444
Q ss_pred hhhhhhhccCCCCchhhhHHHHHhcccCCChhh--HHHHHHHHHHHHH----------HhhchHHHHHHHHHHhccCCCc
Q 000961 1051 LQLELKRRELKDDPVRQQELAAYFTHCNLQMPH--LRLALLNAMSVCF----------KNKNLATAGNFARRLLETNPTI 1118 (1208)
Q Consensus 1051 ~~~e~~r~~~~~~~~r~~el~~yft~~~l~~~h--~~l~l~~a~~~~~----------k~~n~~~a~~~a~~ll~~~~~~ 1118 (1208)
...... ++ -...++. |=.-.++.|.+ ..-++-.--...+ +.++|..|....+++++..|.
T Consensus 156 ~~~~~~-g~----~~~A~~~--~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~- 227 (261)
T 3qky_A 156 RLYERR-EL----YEAAAVT--YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD- 227 (261)
T ss_dssp HHHHHT-TC----HHHHHHH--HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHc-cC----HHHHHHH--HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC-
Confidence 433221 11 0111111 11111122321 1112111111222 349999999999999999998
Q ss_pred hhHHHHHHHHHHHHhc
Q 000961 1119 ESQSKTARQVLQAAER 1134 (1208)
Q Consensus 1119 ~~~~~~a~~~~~~~~~ 1134 (1208)
.+.+.+|+..+..+.+
T Consensus 228 ~~~~~~a~~~l~~~~~ 243 (261)
T 3qky_A 228 SPLLRTAEELYTRARQ 243 (261)
T ss_dssp CTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 7888888888776644
No 402
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.18 E-value=0.7 Score=42.73 Aligned_cols=82 Identities=11% Similarity=0.173 Sum_probs=56.0
Q ss_pred HHHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHH
Q 000961 641 NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAE 715 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~ 715 (1208)
...++.|+++.|+...++ -++...|..||......|+++.|+.+|.+.-..+ -.+.+-...+
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~l----- 91 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAAL----- 91 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHH-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHH-----
Confidence 345668899988887654 2468899999999999999999999998753221 1122222222
Q ss_pred HcCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 716 VKNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 716 ~~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|+..|.+.
T Consensus 92 --------a~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 92 --------AVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHcCCHHHHHHHHHHH
Confidence 23566677888888777654
No 403
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.15 E-value=1.1 Score=41.25 Aligned_cols=80 Identities=6% Similarity=0.014 Sum_probs=53.5
Q ss_pred HHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHc
Q 000961 643 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVK 717 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~ 717 (1208)
++..|+++.|++..++ -+++..|..+|......|+++.|..+|.++-..+ -.+..-...+
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l------- 78 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRK------- 78 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHH-------
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHH-------
Confidence 4556777777766543 2457889999999999999999999887763221 1222222222
Q ss_pred CCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 718 NDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 718 ~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|+..|.++
T Consensus 79 ------g~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 79 ------ATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp ------HHHHHHTTCHHHHHHHHHHH
T ss_pred ------HHHHHHHhCHHHHHHHHHHH
Confidence 24667788888888887764
No 404
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=92.01 E-value=0.61 Score=53.31 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHH-------hCC----hhHHHHHHHHHHHcCChhHHHHHHHhhcC--------------cchhH
Q 000961 641 NLALESGNIQIAVASAKE-------IDE----KDHWYRLGVEALRQGNAGIVEYAYQRTKN--------------FERLS 695 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~-------~~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------------~~~l~ 695 (1208)
.+....|+++.|.+..++ ..+ ...|..+|.....+|+++.|+.+|.+.-. +..+.
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 310 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG 310 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445567888777766543 222 22788899999999999999998876532 23455
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHcCCc-------hhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChHHHHH
Q 000961 696 FLYLITGNMDKLSKMLKIA----EVKNDV-------MGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQDVAER 764 (1208)
Q Consensus 696 ~l~~~~g~~~kl~k~~~~~----~~~~~~-------~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~ 764 (1208)
.+|...|+.++..+..+.+ ...++. .....++..+|++++|.+.|.+ |+.+++..|..+....
T Consensus 311 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~ 384 (411)
T 4a1s_A 311 NTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ------HLQLAXXXXXXXXXXX 384 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHCCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH------HHHHHhhcccchhhhh
Confidence 6677788888866544433 222321 1233445566788887777654 4555666655444333
No 405
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=91.82 E-value=1.9 Score=48.77 Aligned_cols=102 Identities=8% Similarity=-0.029 Sum_probs=67.1
Q ss_pred HHHHhcCCHHHHHHHHHH-------hCC-----hhHHHHHHHHHHHcCChhHHHHHHHhhcC--------------cchh
Q 000961 641 NLALESGNIQIAVASAKE-------IDE-----KDHWYRLGVEALRQGNAGIVEYAYQRTKN--------------FERL 694 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~-------~~~-----~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------------~~~l 694 (1208)
......|+++.|++..++ .++ ...+..||......|+++.|+.+|.++-+ +..+
T Consensus 151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 334557888877776543 222 35788899999999999999999987532 3456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----cCC-c------hhhHHHHHhcCCHHHHHHHHHH
Q 000961 695 SFLYLITGNMDKLSKMLKIAEV----KND-V------MGQFHNALYLGDVKERVKILES 742 (1208)
Q Consensus 695 ~~l~~~~g~~~kl~k~~~~~~~----~~~-~------~~~~~~al~lgd~~~A~~i~~~ 742 (1208)
..+|...|+.++..+..+.+.. .++ . .....++..+|++++|+..|.+
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6677888888887655444433 244 2 2233445566777777777654
No 406
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.77 E-value=0.61 Score=51.05 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=68.3
Q ss_pred HHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHH
Q 000961 643 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k 709 (1208)
.+..|+++.|.+..++. ++...|..+|......|+++.|..+|.+.-.. ..+..+|...|+.++..+
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 110 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA 110 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44556666666655432 34566677777777777777777777664322 234445566666666655
Q ss_pred HHHHHHHcCCchhh-------------------HH-HHHhcCCHHHHHHHHHHcCC----ChHH----HHHHHhcCChHH
Q 000961 710 MLKIAEVKNDVMGQ-------------------FH-NALYLGDVKERVKILESAGH----LPLA----YITASVHGLQDV 761 (1208)
Q Consensus 710 ~~~~~~~~~~~~~~-------------------~~-~al~lgd~~~A~~i~~~~g~----~~~A----~~~a~~~g~~~~ 761 (1208)
..+.+......... .. ++...|++++|+++|.++-. ...+ ..+....|.+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 190 (327)
T 3cv0_A 111 SLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDS 190 (327)
T ss_dssp HHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHH
Confidence 54444332211100 01 24445777777777766421 1111 123445677777
Q ss_pred HHHHHHH
Q 000961 762 AERLAAE 768 (1208)
Q Consensus 762 a~~l~~~ 768 (1208)
|.+..++
T Consensus 191 A~~~~~~ 197 (327)
T 3cv0_A 191 AAANLRR 197 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 407
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.76 E-value=1.5 Score=47.74 Aligned_cols=128 Identities=12% Similarity=-0.050 Sum_probs=84.3
Q ss_pred HHHhcCCHHHHHHHH-------HHhCC----hhHHHHHHHHHHHcCChhHHHHHHHhh-------cC-------cchhHH
Q 000961 642 LALESGNIQIAVASA-------KEIDE----KDHWYRLGVEALRQGNAGIVEYAYQRT-------KN-------FERLSF 696 (1208)
Q Consensus 642 lal~~g~~~~A~~~a-------~~~~~----~~~w~~La~~al~~g~~~~Ae~~y~~~-------~d-------~~~l~~ 696 (1208)
+....|+++.|++.. .+.++ ...|..+|......|+++.|..+|.++ ++ +..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777666554 33444 357899999999999999999998775 33 234556
Q ss_pred HHHhc-CCHHHHHHHHHHH----HHcCCc-------hhhHHHHHhcCCHHHHHHHHHHcCCCh---------------HH
Q 000961 697 LYLIT-GNMDKLSKMLKIA----EVKNDV-------MGQFHNALYLGDVKERVKILESAGHLP---------------LA 749 (1208)
Q Consensus 697 l~~~~-g~~~kl~k~~~~~----~~~~~~-------~~~~~~al~lgd~~~A~~i~~~~g~~~---------------~A 749 (1208)
+|... |+.++....-+.+ ...++. .....++..+|++++|+..|.++.... ..
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 67775 9998876444333 223322 122345677899999999998753311 12
Q ss_pred HHHHHhcCChHHHHHHHHHc
Q 000961 750 YITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 750 ~~~a~~~g~~~~a~~l~~~~ 769 (1208)
..+....|..+.|....+..
T Consensus 206 g~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 24456778899998888863
No 408
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.76 E-value=1.4 Score=38.94 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=58.1
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHH
Q 000961 660 DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKI 739 (1208)
Q Consensus 660 ~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i 739 (1208)
+++..|..||......|+++.|+.+|.++-..+ -.+..-...+ ..++..+|++++|++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l-------------g~~~~~~g~~~~A~~~ 63 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD--------PDYVGTYYHL-------------GKLYERLDRTDDAIDT 63 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHH-------------HHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHH-------------HHHHHHcCCHHHHHHH
Confidence 457789999999999999999999998763221 1111111112 3467778999999998
Q ss_pred HHHcCCChHHHHHHHhcCChHHHHHHHHHc
Q 000961 740 LESAGHLPLAYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 740 ~~~~g~~~~A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
|.+ |+.++...+....+.++.+-+
T Consensus 64 ~~~------al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 64 YAQ------GIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHH------HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHH------HHhhhhcCCchhHHHHHHHHH
Confidence 876 677777788877666665543
No 409
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=91.67 E-value=1.7 Score=49.31 Aligned_cols=126 Identities=13% Similarity=0.010 Sum_probs=77.7
Q ss_pred HHhcCCHHHHHHHH-------HHhCCh----hHHHHHHHHHHHcCChhHHHHHHHhhc-------C-------cchhHHH
Q 000961 643 ALESGNIQIAVASA-------KEIDEK----DHWYRLGVEALRQGNAGIVEYAYQRTK-------N-------FERLSFL 697 (1208)
Q Consensus 643 al~~g~~~~A~~~a-------~~~~~~----~~w~~La~~al~~g~~~~Ae~~y~~~~-------d-------~~~l~~l 697 (1208)
....|+++.|.+.. ++.+++ ..+..||.....+|+++.|..+|.++- + +..+..+
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 34456666665543 333332 367788888888888888888887753 3 3456667
Q ss_pred HHhcCCHHHHHHHHHHH----HHcCCchh------hHHHHHhcCC---HHHHHHHHHHcCCChHHH-------HHHHhcC
Q 000961 698 YLITGNMDKLSKMLKIA----EVKNDVMG------QFHNALYLGD---VKERVKILESAGHLPLAY-------ITASVHG 757 (1208)
Q Consensus 698 ~~~~g~~~kl~k~~~~~----~~~~~~~~------~~~~al~lgd---~~~A~~i~~~~g~~~~A~-------~~a~~~g 757 (1208)
|...|+.++..+..+.+ ...++... ...++...|+ +++|+.++.+.+..+.-. .+....|
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCC
Confidence 77888888876544433 22333211 2223444577 888888888887654321 3445567
Q ss_pred ChHHHHHHHHH
Q 000961 758 LQDVAERLAAE 768 (1208)
Q Consensus 758 ~~~~a~~l~~~ 768 (1208)
..+.|.+..++
T Consensus 354 ~~~~A~~~~~~ 364 (383)
T 3ulq_A 354 NFQKASAYFLK 364 (383)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 77777666654
No 410
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.44 E-value=1.9 Score=46.49 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhhcCc----------------chhHHHHHhcCCHHHHHHHHHHHHHc------CCc
Q 000961 663 DHWYRLGVEALRQGNAGIVEYAYQRTKNF----------------ERLSFLYLITGNMDKLSKMLKIAEVK------NDV 720 (1208)
Q Consensus 663 ~~w~~La~~al~~g~~~~Ae~~y~~~~d~----------------~~l~~l~~~~g~~~kl~k~~~~~~~~------~~~ 720 (1208)
..|..+|......|+++.|..+|.++-+. ..+..+|...|+.++..+..+.+... ++.
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666666667777777777766654322 22334455566666655444333222 111
Q ss_pred -------hhhHHHHHhcCCHHHHHHHHHHc
Q 000961 721 -------MGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 721 -------~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
.....++..+|++++|++.|.++
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11233455567777777776554
No 411
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.39 E-value=1.1 Score=47.51 Aligned_cols=20 Identities=5% Similarity=-0.270 Sum_probs=16.0
Q ss_pred HHHHHhcCCHHHHHHHHHHc
Q 000961 724 FHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 724 ~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++...|++++|+..|.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 45677789999999998775
No 412
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=91.28 E-value=1.3 Score=43.06 Aligned_cols=81 Identities=9% Similarity=-0.031 Sum_probs=54.3
Q ss_pred HHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 642 LALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
.++..|+++.|++..++ -+++..|..+|......|+++.|..+|.+.-..+ -.+..-...+
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l------ 85 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--------PKYSKAWSRL------ 85 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHH------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHH------
Confidence 44566777777776553 2357889999999999999999999888763221 1222222222
Q ss_pred cCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 717 KNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 717 ~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|++.|.++
T Consensus 86 -------g~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 86 -------GLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHH
T ss_pred -------HHHHHHccCHHHHHHHHHHH
Confidence 34567778888888887654
No 413
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=91.25 E-value=2.5 Score=44.64 Aligned_cols=154 Identities=11% Similarity=-0.075 Sum_probs=94.2
Q ss_pred HHHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChh
Q 000961 616 MIAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAG 679 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~ 679 (1208)
+...+...|..+.|+..+. +|. ..+ ......|+++.|++..++ -+++..|..+|......|+++
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 128 (275)
T 1xnf_A 49 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 128 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHH
Confidence 4445567777777776544 222 222 345567888888887654 235778888888888889999
Q ss_pred HHHHHHHhhcCc-------chhHHHHHhcCCHHHHHHHHHHHHHc-CCc---hhhHHHHHhcCCHHHHHHHHHHcCCChH
Q 000961 680 IVEYAYQRTKNF-------ERLSFLYLITGNMDKLSKMLKIAEVK-NDV---MGQFHNALYLGDVKERVKILESAGHLPL 748 (1208)
Q Consensus 680 ~Ae~~y~~~~d~-------~~l~~l~~~~g~~~kl~k~~~~~~~~-~~~---~~~~~~al~lgd~~~A~~i~~~~g~~~~ 748 (1208)
.|..+|.++-.. .....++...|+.++..+..+.+... .+. ......++..++.++|++.|.+.-....
T Consensus 129 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 888888776322 11223345567777665554333222 211 1222334455777888888877544322
Q ss_pred ------------HHHHHHhcCChHHHHHHHHHc
Q 000961 749 ------------AYITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 749 ------------A~~~a~~~g~~~~a~~l~~~~ 769 (1208)
...+....|..++|....+..
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123456678888998888874
No 414
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.12 E-value=3.5 Score=51.09 Aligned_cols=200 Identities=12% Similarity=0.135 Sum_probs=105.0
Q ss_pred cCCCEEEEEECC----CeEEEEECCCCeEEEEE-c------cCCCCEEEEEEcC-CCCEEEEEECC------CcEEEEEC
Q 000961 61 KSQPLFVSGGDD----YKIKVWNYKMHRCLFTL-L------GHLDYIRTVQFHH-EYPWIVSASDD------QTIRIWNW 122 (1208)
Q Consensus 61 p~~~~Lasgs~D----g~I~vWd~~~~~~~~~l-~------~h~~~I~~v~fs~-d~~~l~s~s~D------g~I~iwd~ 122 (1208)
.++.+++.||.+ ..+.+||..+++....- . .....-.+++..+ ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567778888753 46888998876544332 1 1111112333333 66677777643 35788998
Q ss_pred CCCeEEEEEecC-CCCEEEEEEeeCCCEEEEEECCC--eEEEEECCCCccccccCCCcceeeccccccccccccceEEEE
Q 000961 123 QSRTCISVLTGH-NHYVMCASFHPKEDLVVSASLDQ--TVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYV 199 (1208)
Q Consensus 123 ~s~~~i~~l~~h-~~~V~~l~~~p~~~~l~s~s~Dg--~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1208)
.+.+-...-... ...-.+++...++..++.|+.++ .+.+||..+..-....+...
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~---------------------- 533 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE---------------------- 533 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSG----------------------
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCC----------------------
Confidence 875433221100 11112223323678888887654 68899987755432211000
Q ss_pred EeccCCCeEEEEEcCC-CCEEEEEeC--C-----CcEEEEECCCCce-----eE-EEeec-CcCCCeEEEEEccCCCEEE
Q 000961 200 LEGHDRGVNWAAFHPT-LPLIVSGAD--D-----RQVKLWRMNETKA-----WE-VDTLR-GHMNNVSCVMFHAKQDIIV 264 (1208)
Q Consensus 200 ~~~h~~~V~~l~~sp~-g~~L~sgs~--d-----g~I~iwd~~~~~~-----~~-~~~l~-~h~~~V~~l~~sp~g~~l~ 264 (1208)
.........++.+..+ +.+++.|+. + ..+.+||+.+... |. +.... ...... +++...++.+++
T Consensus 534 ~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv 612 (695)
T 2zwa_A 534 FFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLI 612 (695)
T ss_dssp GGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEE
T ss_pred CCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEE
Confidence 0001111223444544 567777765 2 4588999988772 32 22211 111122 233333467777
Q ss_pred EEeC--------CCcEEEEeCCCCeeE
Q 000961 265 SNSE--------DKSIRVWDVTKRTGV 283 (1208)
Q Consensus 265 sgs~--------dg~I~vwd~~~~~~~ 283 (1208)
.|+. ...+.+||..+.+..
T Consensus 613 ~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 613 VGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp ECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred ECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 7774 345899998877654
No 415
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.12 E-value=2.7 Score=44.74 Aligned_cols=126 Identities=17% Similarity=0.072 Sum_probs=88.0
Q ss_pred HHhcCCHHHHHHHHH---HhCChhHHHHHHHHHHH----cCChhHHHHHHHhhcCc------chhHHHHHh----cCCHH
Q 000961 643 ALESGNIQIAVASAK---EIDEKDHWYRLGVEALR----QGNAGIVEYAYQRTKNF------ERLSFLYLI----TGNMD 705 (1208)
Q Consensus 643 al~~g~~~~A~~~a~---~~~~~~~w~~La~~al~----~g~~~~Ae~~y~~~~d~------~~l~~l~~~----~g~~~ 705 (1208)
....|+++.|++..+ +.+++..|..||..... .++++.|..+|.+.-+. ..+..+|.. .++.+
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 95 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTN 95 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHH
Confidence 344567777766644 35778899999999999 99999999999986443 234556777 99999
Q ss_pred HHHHHHHHHHHcCCchhhH---HHHHh----cCCHHHHHHHHHHcCCC--hHH-HHH---HHh----cCChHHHHHHHHH
Q 000961 706 KLSKMLKIAEVKNDVMGQF---HNALY----LGDVKERVKILESAGHL--PLA-YIT---ASV----HGLQDVAERLAAE 768 (1208)
Q Consensus 706 kl~k~~~~~~~~~~~~~~~---~~al~----lgd~~~A~~i~~~~g~~--~~A-~~~---a~~----~g~~~~a~~l~~~ 768 (1208)
+..+.-+.+...++....+ .++.. .|++++|++.|.++-.. ..| +.+ ... .+..++|.+..+.
T Consensus 96 ~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 175 (273)
T 1ouv_A 96 KALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDK 175 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9888888777777654332 23455 89999999999765322 222 122 222 5677777777765
No 416
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=91.12 E-value=0.43 Score=56.37 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=60.2
Q ss_pred HHHHhcCCHHHHHHHHHH----hCChhHHHHHHHHHHHc---------CChhHHHHHHHhhcC--------cchhHHHHH
Q 000961 641 NLALESGNIQIAVASAKE----IDEKDHWYRLGVEALRQ---------GNAGIVEYAYQRTKN--------FERLSFLYL 699 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~----~~~~~~w~~La~~al~~---------g~~~~Ae~~y~~~~d--------~~~l~~l~~ 699 (1208)
......|+++.|.+..++ .++...|..||...... |+++.|+.+|.++-. +..+..+|.
T Consensus 145 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 224 (474)
T 4abn_A 145 EVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL 224 (474)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344556777777776554 13356777777777777 777777777776422 123444455
Q ss_pred hc--------CCHHHHHHHHHHHHHcCC----c----hhhHHHHHhcCCHHHHHHHHHHc
Q 000961 700 IT--------GNMDKLSKMLKIAEVKND----V----MGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 700 ~~--------g~~~kl~k~~~~~~~~~~----~----~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
.. |+.++..+..+.+....- . .....++..+|++++|++.|.++
T Consensus 225 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55 666666555554443221 1 12233455667888877777664
No 417
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.99 E-value=4.7 Score=43.58 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=115.1
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEECCCCeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLL 90 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd~~~g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~ 90 (1208)
.|..|+-.... .++. . ||.|..|-....-.+..-......|..++....... +. . ||.|..|-......+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~-~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSL-AL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEE-EE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEE-EE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56777765432 2333 4 899999975432211111122346777776544333 33 4 8999999765422211111
Q ss_pred cCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccc
Q 000961 91 GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKK 170 (1208)
Q Consensus 91 ~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~ 170 (1208)
.-...|..++...+. .+... ||.|..|-....-.+..-......|..++.... ..+.-+ ||.|..|-.......
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCC
Confidence 113467777766554 33334 899999976532111111112345666655432 333334 799999976543221
Q ss_pred cccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCC
Q 000961 171 TVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNN 250 (1208)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~ 250 (1208)
.. | ......|..++..... .++. .||.|..|-....... ..-......
T Consensus 173 g~-p--------------------------~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gql--g~p~~~~~~ 220 (282)
T 3qhy_B 173 TV-P--------------------------AEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQT--TVPTEALSG 220 (282)
T ss_dssp SC-C--------------------------GGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTT--CCCGGGGSS
T ss_pred CC-c--------------------------eecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCC--CCCcccCCC
Confidence 10 0 0012345556554432 3333 4888999976654321 111112245
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 000961 251 VSCVMFHAKQDIIVSNSEDKSIRVWDVTKR 280 (1208)
Q Consensus 251 V~~l~~sp~g~~l~sgs~dg~I~vwd~~~~ 280 (1208)
|..++-....... -. ||.|..|=....
T Consensus 221 v~~i~~G~~h~~a--l~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 221 VSAIASGEWYSLA--LK-NGKVIAWGSSRT 247 (282)
T ss_dssp CCEEEECSSCEEE--EE-TTEEEEESTTCC
T ss_pred ceEEEcCCCEEEE--EE-CCEEEEecCCCC
Confidence 7777665443333 33 899999975543
No 418
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=90.86 E-value=1.1 Score=53.06 Aligned_cols=127 Identities=12% Similarity=0.041 Sum_probs=89.9
Q ss_pred HHHHHhCCChhhhhcccc-----Ccc--hhh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHH
Q 000961 617 IAYLQQKGFPEVALHFVK-----DER--TRF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIV 681 (1208)
Q Consensus 617 ~~yl~~~g~~e~Al~~~~-----~~~--~~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~A 681 (1208)
..++...|.++.|+..+. +|. ..+ ......|+++.|++..++. +++..|..+|......|+++.|
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 345566777787776544 333 122 3445679999999887642 4578999999999999999999
Q ss_pred HHHHHhhcCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hhhHHHHHhcCCHHHHHHHHHHc
Q 000961 682 EYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 682 e~~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~~~~~~~~-----~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..+|.++-.. ..+..+|...|+.++..+..+.+...... .....++...|++++|++.|.++
T Consensus 330 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999886322 34566788899999987766655443221 22344567789999999998874
No 419
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=90.86 E-value=1.7 Score=46.11 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhcC
Q 000961 662 KDHWYRLGVEALRQGNAGIVEYAYQRTKN 690 (1208)
Q Consensus 662 ~~~w~~La~~al~~g~~~~Ae~~y~~~~d 690 (1208)
...|..||......|+++.|..+|.++-+
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45788899999999999999999988643
No 420
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=90.85 E-value=1.3 Score=52.59 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=90.3
Q ss_pred HHHHHHhCCChhhhhcccc-----Cc---chhh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChh
Q 000961 616 MIAYLQQKGFPEVALHFVK-----DE---RTRF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAG 679 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~-----~~---~~~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~ 679 (1208)
+...+...|.++.|+..+. +| ...+ ......|+++.|.+..++. +++..|..+|......|+++
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3444456666666666543 22 2222 4455678888888776542 34677888888888888888
Q ss_pred HHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHH----cCCch-------hhHHHHHhc----------
Q 000961 680 IVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEV----KNDVM-------GQFHNALYL---------- 730 (1208)
Q Consensus 680 ~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~----~~~~~-------~~~~~al~l---------- 730 (1208)
.|..+|.+.-. +..+..+|...|+.++..+..+.+.. ..... ....++...
T Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 88888876522 23445566778888776655443322 11111 112344455
Q ss_pred CCHHHHHHHHHHcCC----ChHHH----HHHHhcCChHHHHHHHHH
Q 000961 731 GDVKERVKILESAGH----LPLAY----ITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 731 gd~~~A~~i~~~~g~----~~~A~----~~a~~~g~~~~a~~l~~~ 768 (1208)
|++++|+..|.++-. ...++ .+....|..++|.+..++
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888776421 12222 344567777777777766
No 421
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=90.83 E-value=1.3 Score=47.05 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=34.4
Q ss_pred HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhc
Q 000961 641 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTK 689 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~ 689 (1208)
......|+++.|.+..++. +++..|..||......|+++.|..+|.++-
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445577888877776542 346778888888888888888888777653
No 422
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.70 E-value=1.3 Score=39.37 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 642 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
.+...|+++.|.+..++. +++..|..+|......|+++.|..+|.+.-... ..+..-...+
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~------ 78 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--------PDWGKGYSRK------ 78 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHH------
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------cccHHHHHHH------
Confidence 344567777777765532 357788889999999999999988887653221 1111111111
Q ss_pred cCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 717 KNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 717 ~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|++.|.++
T Consensus 79 -------a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 79 -------AAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHH
T ss_pred -------HHHHHHHhhHHHHHHHHHHH
Confidence 23566678888888777654
No 423
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.59 E-value=1.5 Score=42.17 Aligned_cols=71 Identities=10% Similarity=0.010 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHH
Q 000961 643 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSK 709 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k 709 (1208)
+...|+++.|....++ -++...|..+|......|+++.|..+|.+.-.. ..+..+|...|+.++..+
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 102 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 102 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 3456677776666543 234677888888888888888888888765322 222334445555555544
Q ss_pred HHHH
Q 000961 710 MLKI 713 (1208)
Q Consensus 710 ~~~~ 713 (1208)
..+.
T Consensus 103 ~~~~ 106 (166)
T 1a17_A 103 DYET 106 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 424
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.57 E-value=1.1 Score=39.60 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=36.5
Q ss_pred HHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhc
Q 000961 642 LALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTK 689 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~ 689 (1208)
.....|+++.|....++ -++...|..+|......|+++.|..+|.+.-
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34456777777776543 2457789999999999999999999988764
No 425
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.43 E-value=2.3 Score=47.29 Aligned_cols=109 Identities=7% Similarity=0.001 Sum_probs=70.2
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEccC-CCCEEEEEE--cCCCCEEEEE--ECCCcEEEEECCCCeEEEEEec----C
Q 000961 64 PLFVSGGDDYKIKVWNYKMHRCLFTLLGH-LDYIRTVQF--HHEYPWIVSA--SDDQTIRIWNWQSRTCISVLTG----H 134 (1208)
Q Consensus 64 ~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h-~~~I~~v~f--s~d~~~l~s~--s~Dg~I~iwd~~s~~~i~~l~~----h 134 (1208)
.++++++.||.|.-.|.++|+...++... ..++....- .+.+..++.+ +.||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 36888999999999999999999988654 122222110 0112234444 5899999999988866554431 2
Q ss_pred CCCEEE---EEE-e----eCCCEEEEEECCCeEEEEECCCCccccc
Q 000961 135 NHYVMC---ASF-H----PKEDLVVSASLDQTVRVWDIGALRKKTV 172 (1208)
Q Consensus 135 ~~~V~~---l~~-~----p~~~~l~s~s~Dg~V~vwdl~~~~~~~~ 172 (1208)
..++.. ... . ..+..+++|+.+|.+...|..+++....
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 222221 000 0 1456789999999999999998876543
No 426
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.35 E-value=1.9 Score=39.97 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCchhhh
Q 000961 989 NFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQ 1068 (1208)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~~r~~ 1068 (1208)
++..-....+.|..++..|+|++|+..|+..|..-| .+. .-+.. +|..... .++. ...
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p----~~~------~~~~~------~~~~~~~-~~~~----~~A- 66 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP----ENA------ILYSN------RAACLTK-LMEF----QRA- 66 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCH------HHHHH------HHHHHHH-TTCH----HHH-
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCH------HHHHH------HhhHHHh-hccH----HHH-
Confidence 444444556789999999999999999999998877 331 11222 2222211 0110 111
Q ss_pred HHHHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHHHHHh
Q 000961 1069 ELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAE 1133 (1208)
Q Consensus 1069 el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~~~~~ 1133 (1208)
+..|=....+.|.|-..=.+.|+ ..++.|+|..|...-++.|+++|. .. .|+.-+..|.
T Consensus 67 -~~~~~~al~~~p~~~~a~~~lg~-~~~~~~~~~~A~~~~~~al~l~P~-~~---~a~~~l~~~l 125 (126)
T 4gco_A 67 -LDDCDTCIRLDSKFIKGYIRKAA-CLVAMREWSKAQRAYEDALQVDPS-NE---EAREGVRNCL 125 (126)
T ss_dssp -HHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTT-CH---HHHHHHHHHC
T ss_pred -HHHHHHHHHhhhhhhHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCcC-CH---HHHHHHHHhc
Confidence 11122222345666554445554 457899999999999999999998 33 2444455543
No 427
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=90.35 E-value=1.9 Score=48.63 Aligned_cols=113 Identities=17% Similarity=0.126 Sum_probs=68.8
Q ss_pred HHHhcCCHHHHHHHHH-------HhCC----hhHHHHHHHHHHHcCChhHHHHHHHhhcC--------------cchhHH
Q 000961 642 LALESGNIQIAVASAK-------EIDE----KDHWYRLGVEALRQGNAGIVEYAYQRTKN--------------FERLSF 696 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~-------~~~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------------~~~l~~ 696 (1208)
+....|+++.|.+..+ ...+ ...|..+|......|+++.|..+|.+.-. +..+..
T Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 275 (406)
T ss_dssp HHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHH
Confidence 3444566666665543 3333 23788889999999999999988877532 234555
Q ss_pred HHHhcCCHHHHHHHHHHH----HHcCCc-------hhhHHHHHhcCCHHHHHHHHHHcCCChHHHHHHHhcCChH
Q 000961 697 LYLITGNMDKLSKMLKIA----EVKNDV-------MGQFHNALYLGDVKERVKILESAGHLPLAYITASVHGLQD 760 (1208)
Q Consensus 697 l~~~~g~~~kl~k~~~~~----~~~~~~-------~~~~~~al~lgd~~~A~~i~~~~g~~~~A~~~a~~~g~~~ 760 (1208)
+|...|+.++..+..+.+ ...++. .....++..+|++++|++.|.+ |+.+++..+...
T Consensus 276 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~ 344 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK------HLEISREVGDKS 344 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH------HHHHHHHTTCHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCc
Confidence 677788888765443332 223332 1223445667888888887765 455556665543
No 428
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.31 E-value=1.5 Score=40.75 Aligned_cols=81 Identities=10% Similarity=-0.040 Sum_probs=52.8
Q ss_pred HHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 642 LALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
.++..|+++.|++..+. -+++..|..+|......|+++.|..+|.+.-..+ ..+..-...+
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l------ 83 (137)
T 3q49_B 18 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFFL------ 83 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHH------
T ss_pred HHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------chhHHHHHHH------
Confidence 34556777777766543 2347788999999999999999998887753322 1122222222
Q ss_pred cCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 717 KNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 717 ~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|+..|.++
T Consensus 84 -------~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 -------GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHH
T ss_pred -------HHHHHHHhhHHHHHHHHHHH
Confidence 24566778888888887654
No 429
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=90.25 E-value=1 Score=49.03 Aligned_cols=119 Identities=8% Similarity=-0.068 Sum_probs=79.0
Q ss_pred HHhcCCHHHHHHHHHHh-------CC----hhHHHHHHHHHHHcCChhHHHHHHHhhc-------C--------cchhHH
Q 000961 643 ALESGNIQIAVASAKEI-------DE----KDHWYRLGVEALRQGNAGIVEYAYQRTK-------N--------FERLSF 696 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-------~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~-------d--------~~~l~~ 696 (1208)
....|+++.|++..++. .+ ...|..+|.....+|+++.|..+|.++- + +..+..
T Consensus 125 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 45678999999886542 22 3478899999999999999999998753 1 123445
Q ss_pred HHHhcCCHHHHHHHHHHHH----HcCCc-------hhhHHHHHhcCCHHHH-HHHHHHcCCChHHHHHHHhcCChHHHHH
Q 000961 697 LYLITGNMDKLSKMLKIAE----VKNDV-------MGQFHNALYLGDVKER-VKILESAGHLPLAYITASVHGLQDVAER 764 (1208)
Q Consensus 697 l~~~~g~~~kl~k~~~~~~----~~~~~-------~~~~~~al~lgd~~~A-~~i~~~~g~~~~A~~~a~~~g~~~~a~~ 764 (1208)
+|...|+.++..+..+.+. ..++. .....++..+|++++| ...| ..|+.+++..+....+..
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~------~~Al~~~~~~~~~~~~~~ 278 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY------KKASFFFDILEMHAYKEA 278 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHH------HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH------HHHHHHHHHhCcHhhHHH
Confidence 6788999988775554432 22221 1122345667888888 4434 356778888888776655
Q ss_pred HHH
Q 000961 765 LAA 767 (1208)
Q Consensus 765 l~~ 767 (1208)
+..
T Consensus 279 ~~~ 281 (293)
T 2qfc_A 279 LVN 281 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 430
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=90.22 E-value=1.3 Score=50.41 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=78.8
Q ss_pred HHHhcCCHHHHHHHHHH-------hCC----hhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------------chhHH
Q 000961 642 LALESGNIQIAVASAKE-------IDE----KDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------------ERLSF 696 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~-------~~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------------~~l~~ 696 (1208)
.....|+++.|.+..++ .++ ...|..+|......|+++.|..+|.+.-.. ..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 34557888877776442 222 467888999999999999999988775433 34555
Q ss_pred HHHhcCC-----------------HHHHHHHHHHH----HHcCCc-------hhhHHHHHhcCCHHHHHHHHHHcCCCh-
Q 000961 697 LYLITGN-----------------MDKLSKMLKIA----EVKNDV-------MGQFHNALYLGDVKERVKILESAGHLP- 747 (1208)
Q Consensus 697 l~~~~g~-----------------~~kl~k~~~~~----~~~~~~-------~~~~~~al~lgd~~~A~~i~~~~g~~~- 747 (1208)
+|...|+ .++..+..+.+ ...++. .....++...|++++|++.|.++-...
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6777788 66655443322 222321 223345677899999988887652211
Q ss_pred -------------HHHHHHHhcCChHHHHHHHHH
Q 000961 748 -------------LAYITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 748 -------------~A~~~a~~~g~~~~a~~l~~~ 768 (1208)
.-..+....|.+++|.+..++
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 111334456777777776665
No 431
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.18 E-value=32 Score=39.87 Aligned_cols=243 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCEEEEEEeCCCC-EEEEEecCCeEEEEECCCCeEEEEeccc------------ccCEEEEEEEcC----CCEEEEEECC
Q 000961 10 NRVKGLSFHSKRP-WILASLHSGVIQLWDYRMGTLIDRFDEH------------DGPVRGVHFHKS----QPLFVSGGDD 72 (1208)
Q Consensus 10 ~~V~~lafspdg~-~Lasg~~dg~I~iWd~~~g~~i~~l~~h------------~~~V~~l~fsp~----~~~Lasgs~D 72 (1208)
..-..|+|.|||. .|+++...|.|++++.........+..- .+....|+|+|+ +.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Q ss_pred C------------eEEEEECC----------CCeEEEEEc--cCCCCEEEEEEcCCCCEEEEEECCCcE-----------
Q 000961 73 Y------------KIKVWNYK----------MHRCLFTLL--GHLDYIRTVQFHHEYPWIVSASDDQTI----------- 117 (1208)
Q Consensus 73 g------------~I~vWd~~----------~~~~~~~l~--~h~~~I~~v~fs~d~~~l~s~s~Dg~I----------- 117 (1208)
. .|.-|.+. +.+.+..+. .....-..|.|.|||.+.++.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Q ss_pred ----EEEECCCCe---------------------EEEEEecCCCCEEEEEEeeC-----CCEEEEEECC-----CeEEEE
Q 000961 118 ----RIWNWQSRT---------------------CISVLTGHNHYVMCASFHPK-----EDLVVSASLD-----QTVRVW 162 (1208)
Q Consensus 118 ----~iwd~~s~~---------------------~i~~l~~h~~~V~~l~~~p~-----~~~l~s~s~D-----g~V~vw 162 (1208)
+|+.+.... ...++..--.....++|+|. |++-+.++.. ..-.|.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~ 253 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARIL 253 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEe
Q ss_pred ECCCCccccccCCCcceeeccccccccccccceEEEEEeccC-CCeEEEEEcCCCCE------EEEEeCCCcEEEEECCC
Q 000961 163 DIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHD-RGVNWAAFHPTLPL------IVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 163 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~------L~sgs~dg~I~iwd~~~ 235 (1208)
.+..+......+ ..+.+..|. ..+..+.|-....+ ++++...+.|....+..
T Consensus 254 ~i~~G~~yG~~~---------------------P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~ 312 (463)
T 2wg3_C 254 QIIKGKDYESEP---------------------SLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSP 312 (463)
T ss_dssp EEC----CCSCC---------------------CCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC--
T ss_pred eeccCCCCCCCC---------------------CeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCC
Q ss_pred C-ceeEEEee---------cCcCCCeEEEEEccCCCEEEEEe-------CCCcEE
Q 000961 236 T-KAWEVDTL---------RGHMNNVSCVMFHAKQDIIVSNS-------EDKSIR 273 (1208)
Q Consensus 236 ~-~~~~~~~l---------~~h~~~V~~l~~sp~g~~l~sgs-------~dg~I~ 273 (1208)
. ..+....+ ......+..+...|+|.++++.. .+|.|.
T Consensus 313 ~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~ 367 (463)
T 2wg3_C 313 VTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLY 367 (463)
T ss_dssp ---CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEE
T ss_pred CCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEE
No 432
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=90.12 E-value=1.8 Score=50.96 Aligned_cols=170 Identities=14% Similarity=0.078 Sum_probs=102.9
Q ss_pred HHHHHhhcccccccchHHHHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHHh-----CCh
Q 000961 599 YDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKEI-----DEK 662 (1208)
Q Consensus 599 ~~~~l~~i~~~~~~~~~i~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~~-----~~~ 662 (1208)
+.+++..-+. ...-..+...+...|.++.|+..+. +|. ..+ .+....|+++.|.+..++. ++.
T Consensus 260 ~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 338 (514)
T 2gw1_A 260 IKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338 (514)
T ss_dssp HHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH
Confidence 4444444333 2222345555677788777776544 221 112 4556678888888877652 346
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHH----cCC-------chhh
Q 000961 663 DHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEV----KND-------VMGQ 723 (1208)
Q Consensus 663 ~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~----~~~-------~~~~ 723 (1208)
..|..+|......|+++.|..+|.++-. +..+..+|...|+.++..+..+.+.. ..+ ....
T Consensus 339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 7788888888888888888888877532 22345567778888876655443322 111 1223
Q ss_pred HHHHHh---cCCHHHHHHHHHHcC----CChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 724 FHNALY---LGDVKERVKILESAG----HLPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 724 ~~~al~---lgd~~~A~~i~~~~g----~~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
..++.. .|++++|++.|.++- ....++ .+....|.+++|.+..++.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345566 788888888887642 122221 4455678888887777653
No 433
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=90.00 E-value=1.1 Score=43.17 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=36.9
Q ss_pred HHHhcCCHHHHHHHHHH---h--CChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 642 LALESGNIQIAVASAKE---I--DEKDHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~---~--~~~~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
+..+.|+++.|.+..++ + +++..|..||......|+++.|+.+|.++
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 45667888888877654 2 45788999999999999999999888775
No 434
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=89.99 E-value=2.4 Score=37.97 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=50.4
Q ss_pred HHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHc
Q 000961 643 ALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVK 717 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~ 717 (1208)
....|+++.|.+..++. ++...|..+|......|+++.|..+|.+.-... ..+......+
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l------- 83 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNL------- 83 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHH-------
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CccHHHHHHH-------
Confidence 44566777776665432 356788899999999999999998887753221 1111111111
Q ss_pred CCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 718 NDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 718 ~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++...|++++|++.|.++
T Consensus 84 ------a~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 84 ------GNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp ------HHHHHHTTCHHHHHHHHHHH
T ss_pred ------HHHHHHhcCHHHHHHHHHHH
Confidence 23556678888888777654
No 435
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=89.96 E-value=2.9 Score=45.04 Aligned_cols=107 Identities=18% Similarity=0.045 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhcCc----------------chhHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 000961 662 KDHWYRLGVEALRQGNAGIVEYAYQRTKNF----------------ERLSFLYLITGNMDKLSKMLKIAEVK------ND 719 (1208)
Q Consensus 662 ~~~w~~La~~al~~g~~~~Ae~~y~~~~d~----------------~~l~~l~~~~g~~~kl~k~~~~~~~~------~~ 719 (1208)
...|..+|......|+++.|..+|.++-.. ..+..+|...|+.++..+..+.+... ++
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 457889999999999999999999876432 23455677899999877665544332 22
Q ss_pred c-------hhhHHHHHhcCCHHHHHHHHHHcCCC---------h-HH------HHHHHhcCChHHHHHHHHH
Q 000961 720 V-------MGQFHNALYLGDVKERVKILESAGHL---------P-LA------YITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 720 ~-------~~~~~~al~lgd~~~A~~i~~~~g~~---------~-~A------~~~a~~~g~~~~a~~l~~~ 768 (1208)
. .....++...|++++|+++|.++-.. + .+ ..+....|..++|.+..++
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 22334466789999999998776332 1 11 1334567888888888776
No 436
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=89.90 E-value=1.4 Score=42.72 Aligned_cols=119 Identities=11% Similarity=0.093 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEe---cChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCc-h
Q 000961 990 FSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVV---DSRREVDEVKELITIVKEYVLGLQLELKRRELKDDP-V 1065 (1208)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~-~ 1065 (1208)
+.........|..++..|+|.+|+..|+..|..++-... .+..+..++......+.-.+-.+-+.+.+-.-+-.. .
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344555678999999999999999999999988553211 111222222222222222222222222111101112 3
Q ss_pred hhhHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCc
Q 000961 1066 RQQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTI 1118 (1208)
Q Consensus 1066 r~~el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~ 1118 (1208)
+.+++ .|.+-..-++.|. ..++.++|..|....++.|++.|.+
T Consensus 88 ~al~~---------~p~~~~a~~~~g~-~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 88 EVLKR---------EETNEKALFRRAK-ARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHH---------STTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhc---------CCcchHHHHHHHH-HHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 43433 6666666666665 4578999999999999999999983
No 437
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=89.73 E-value=0.69 Score=50.21 Aligned_cols=152 Identities=13% Similarity=-0.013 Sum_probs=86.6
Q ss_pred HHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhH
Q 000961 617 IAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGI 680 (1208)
Q Consensus 617 ~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~ 680 (1208)
...+.+.|.++.|+..+. +|. ..+ ......|+++.|.+..++. ++...|..+|......|+++.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666676666543 332 222 4456789999999988763 347789999999999999999
Q ss_pred HHHHHHhhcCcc--------hhHHHHHhcCCHHHHHHHHHHHHHc--CCch-hhHHHHHhcCCHHHHHHHHHHcCCCh--
Q 000961 681 VEYAYQRTKNFE--------RLSFLYLITGNMDKLSKMLKIAEVK--NDVM-GQFHNALYLGDVKERVKILESAGHLP-- 747 (1208)
Q Consensus 681 Ae~~y~~~~d~~--------~l~~l~~~~g~~~kl~k~~~~~~~~--~~~~-~~~~~al~lgd~~~A~~i~~~~g~~~-- 747 (1208)
|+..|.+.-..+ ......... .+.....+..+.+ .+.. ......++.|++++|++.|.++-..+
T Consensus 91 A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 91 AIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167 (281)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSC
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 999998753322 111111111 1111111111111 1111 12223445789999998887653332
Q ss_pred -------HHHHHHHhcCChHHHHHHHHHcCC
Q 000961 748 -------LAYITASVHGLQDVAERLAAELGD 771 (1208)
Q Consensus 748 -------~A~~~a~~~g~~~~a~~l~~~~~~ 771 (1208)
++-...+..+..++|.++.++...
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 168 DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 122223333556778888877543
No 438
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=89.69 E-value=2.6 Score=38.21 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=52.0
Q ss_pred HHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 642 LALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
.+...|+++.|.+..++ -+++..|..+|......|+++.|..+|.+.-... ..+..-...+
T Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~------ 86 (131)
T 2vyi_A 21 EQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--------PAYSKAYGRM------ 86 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHH------
T ss_pred HHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--------ccCHHHHHHH------
Confidence 34456777777776553 2357788999999999999999999887763321 1111212122
Q ss_pred cCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 717 KNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 717 ~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|++.|.++
T Consensus 87 -------~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 87 -------GLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHH
T ss_pred -------HHHHHHhCCHHHHHHHHHHH
Confidence 23566677888887777654
No 439
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=89.67 E-value=1.6 Score=39.98 Aligned_cols=81 Identities=7% Similarity=0.056 Sum_probs=48.8
Q ss_pred HHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 000961 642 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEV 716 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~ 716 (1208)
.+...|+++.|.+..++. ++...|..+|......|+++.|..+|.++-.... .+..-...
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~------- 89 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--------TFIKGYTR------- 89 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--------TCHHHHHH-------
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CchHHHHH-------
Confidence 345677777777766542 2456777777777777777777777766532211 11111111
Q ss_pred cCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 717 KNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 717 ~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
...++..+|++++|++.|.++
T Consensus 90 ------la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 90 ------KAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp ------HHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HHHHHHHHhhHHHHHHHHHHH
Confidence 134566678888888877654
No 440
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.64 E-value=2 Score=51.72 Aligned_cols=103 Identities=12% Similarity=0.020 Sum_probs=70.8
Q ss_pred HHHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHH
Q 000961 641 NLALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKL 707 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl 707 (1208)
......|++++|.+..++. ++...|..||.....+|+++.|..+|+++-. +..+..+|...|+.++.
T Consensus 31 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 110 (568)
T 2vsy_A 31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA 110 (568)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3455679999998887652 3477899999999999999999999987522 23455677778888887
Q ss_pred HHHHHHHHHcC-Cc----hhhHHHHHhc---CCHHHHHHHHHHc
Q 000961 708 SKMLKIAEVKN-DV----MGQFHNALYL---GDVKERVKILESA 743 (1208)
Q Consensus 708 ~k~~~~~~~~~-~~----~~~~~~al~l---gd~~~A~~i~~~~ 743 (1208)
.+..+.+.... +. .....++..+ |++++|++.|.++
T Consensus 111 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 76655554332 21 1223345556 7777777777665
No 441
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=89.51 E-value=0.92 Score=42.28 Aligned_cols=47 Identities=4% Similarity=0.012 Sum_probs=30.3
Q ss_pred HHHhcCCHHHHHHHHHH---h--CChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 642 LALESGNIQIAVASAKE---I--DEKDHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~---~--~~~~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
.+...|+++.|++..++ + ++...|..+|...+..|+++.|...|.++
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 34556777777666543 2 34566777777777777777777766654
No 442
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=89.46 E-value=0.62 Score=46.07 Aligned_cols=98 Identities=13% Similarity=0.209 Sum_probs=51.9
Q ss_pred hcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHH-HHhcCCH--HHHH
Q 000961 645 ESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFL-YLITGNM--DKLS 708 (1208)
Q Consensus 645 ~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l-~~~~g~~--~kl~ 708 (1208)
..|+++.|.+..++ -+++..|..+|......|+++.|..+|.+.-.. ..+..+ |...|+. ++..
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34555555544432 235678888888888888888888888775322 122333 5556664 4444
Q ss_pred HHHHHHHHc-CCch----hhHHHHHhcCCHHHHHHHHHH
Q 000961 709 KMLKIAEVK-NDVM----GQFHNALYLGDVKERVKILES 742 (1208)
Q Consensus 709 k~~~~~~~~-~~~~----~~~~~al~lgd~~~A~~i~~~ 742 (1208)
+..+.+... .+.. ....++...|++++|+..|.+
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 333333222 2211 122334556666666666654
No 443
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=89.45 E-value=0.89 Score=53.62 Aligned_cols=128 Identities=11% Similarity=0.038 Sum_probs=87.3
Q ss_pred HHHHhcCCH-HHHHHHHHH---h--CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc-------chhHHHHHhc------
Q 000961 641 NLALESGNI-QIAVASAKE---I--DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF-------ERLSFLYLIT------ 701 (1208)
Q Consensus 641 ~lal~~g~~-~~A~~~a~~---~--~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~-------~~l~~l~~~~------ 701 (1208)
......|++ +.|.+..++ + ++...|..||.....+|+++.|+.+|.++-.. ..+..+|...
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~ 189 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGD 189 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHH
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChh
Confidence 344567999 999888764 2 35789999999999999999999999987443 3455566677
Q ss_pred ---CCHHHHHHHHHHHHHcCCc-----hhhHHHHHhc--------CCHHHHHHHHHHcCCC-------hHHH----HHHH
Q 000961 702 ---GNMDKLSKMLKIAEVKNDV-----MGQFHNALYL--------GDVKERVKILESAGHL-------PLAY----ITAS 754 (1208)
Q Consensus 702 ---g~~~kl~k~~~~~~~~~~~-----~~~~~~al~l--------gd~~~A~~i~~~~g~~-------~~A~----~~a~ 754 (1208)
|+.++..+..+.+...... .....++..+ |++++|++.|.++=.. ..++ .+..
T Consensus 190 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~ 269 (474)
T 4abn_A 190 EHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 8888877666655433322 1222335555 8899999998875331 1222 3345
Q ss_pred hcCChHHHHHHHHH
Q 000961 755 VHGLQDVAERLAAE 768 (1208)
Q Consensus 755 ~~g~~~~a~~l~~~ 768 (1208)
..|..++|.+..++
T Consensus 270 ~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 270 YEESYGEALEGFSQ 283 (474)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 56888888777665
No 444
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=89.18 E-value=5.1 Score=45.08 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=74.3
Q ss_pred HHhcCCHHHHHHHH-------HHhCCh----hHHHHHHHHHHHcCChhHHHHHHHhhcC-------------cchhHHHH
Q 000961 643 ALESGNIQIAVASA-------KEIDEK----DHWYRLGVEALRQGNAGIVEYAYQRTKN-------------FERLSFLY 698 (1208)
Q Consensus 643 al~~g~~~~A~~~a-------~~~~~~----~~w~~La~~al~~g~~~~Ae~~y~~~~d-------------~~~l~~l~ 698 (1208)
....|+++.|.+.. ++.+++ ..+..||.....+|+++.|..+|.++-+ +..+..+|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 34456666665543 334432 4667788888888888888888877643 23445567
Q ss_pred HhcCCHHHHHHHHHHHHHcC----Cc--hhhH----HHHHhcCC---HHHHHHHHHHcCCChHHH-------HHHHhcCC
Q 000961 699 LITGNMDKLSKMLKIAEVKN----DV--MGQF----HNALYLGD---VKERVKILESAGHLPLAY-------ITASVHGL 758 (1208)
Q Consensus 699 ~~~g~~~kl~k~~~~~~~~~----~~--~~~~----~~al~lgd---~~~A~~i~~~~g~~~~A~-------~~a~~~g~ 758 (1208)
...|+.++.....+.+.... +. ...+ ..+...|+ +.+|+.++.+.+.++... .+....|.
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCC
Confidence 77888888776655554321 21 1111 11223456 788888887776654321 33455666
Q ss_pred hHHHHHHHHH
Q 000961 759 QDVAERLAAE 768 (1208)
Q Consensus 759 ~~~a~~l~~~ 768 (1208)
.+.|.+..+.
T Consensus 352 ~~~A~~~~~~ 361 (378)
T 3q15_A 352 FEQAAAFYRK 361 (378)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 445
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=89.14 E-value=1.7 Score=51.14 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 644 LESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 644 l~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
...|+++.|++..++. +++..|..+|......|+++.|..+|.+.
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555555444331 23445555555555555555555555543
No 446
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=89.07 E-value=3 Score=39.93 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCchhh
Q 000961 988 FNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQ 1067 (1208)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~~r~ 1067 (1208)
..+......+..|..++..|++.+|+..|+.++..-| ++.. + .|.+|..+... ++. ...
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~----~--------~~~lg~~~~~~-g~~----~~A 74 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH----YDSR----F--------FLGLGACRQAM-GQY----DLA 74 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHH----H--------HHHHHHHHHHT-TCH----HHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc----ccHH----H--------HHHHHHHHHHH-hhH----HHH
Confidence 3455666678899999999999999999999998877 3311 1 12333333221 110 000
Q ss_pred hHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCc---hhHHHHHHHHHHHHhcCCCC
Q 000961 1068 QELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTI---ESQSKTARQVLQAAERNPTD 1138 (1208)
Q Consensus 1068 ~el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~ 1138 (1208)
+.+|-.-..+.|.|-..-+..|. ..++.++|..|....++.|++.|.+ ....+++++.+..-.++..-
T Consensus 75 --~~~~~~al~l~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~~~~ 145 (148)
T 2vgx_A 75 --IHSYSYGAVMDIXEPRFPFHAAE-CLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEM 145 (148)
T ss_dssp --HHHHHHHHHHSTTCTHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC------
T ss_pred --HHHHHHHHhcCCCCchHHHHHHH-HHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHhHHHh
Confidence 11122222334555444444444 3468999999999999999998864 33557788888877666543
No 447
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=88.72 E-value=3.2 Score=46.83 Aligned_cols=102 Identities=7% Similarity=-0.009 Sum_probs=70.2
Q ss_pred HHHhcCCHHHHHHHHHH-------hCC-----hhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------------chhH
Q 000961 642 LALESGNIQIAVASAKE-------IDE-----KDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------------ERLS 695 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~-------~~~-----~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------------~~l~ 695 (1208)
.....|+++.|++..++ ..+ ..++..||......|+++.|+.+|.++-+. ..+.
T Consensus 150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44567888887776543 222 346789999999999999999999875432 3356
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----cCCch------hhHHHHHhcCCHHHHHHHHHHc
Q 000961 696 FLYLITGNMDKLSKMLKIAEV----KNDVM------GQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 696 ~l~~~~g~~~kl~k~~~~~~~----~~~~~------~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
.+|...|+.++..+..+.+.. .++.. ....++..+|++++|+..|.++
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 678889999987765554433 23322 2233456679999998888763
No 448
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=88.44 E-value=3.9 Score=40.24 Aligned_cols=102 Identities=12% Similarity=-0.003 Sum_probs=62.4
Q ss_pred HHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcch---hHH----HHH-h-cCCHHHH
Q 000961 642 LALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFER---LSF----LYL-I-TGNMDKL 707 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~---l~~----l~~-~-~g~~~kl 707 (1208)
..+..|+++.|....++ -+++..|..||...+.+|+++.|+.+|.+.-..+- ... +.. . .+..+.+
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~ 94 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPEL 94 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHH
Confidence 45667889988888764 35678999999999999999999999988754321 111 111 0 1121122
Q ss_pred HHHHHHHHHcCCc----hhhHHHHHhcCCHHHHHHHHHHc
Q 000961 708 SKMLKIAEVKNDV----MGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 708 ~k~~~~~~~~~~~----~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..+.+......+. .....++...|++++|+..|.+.
T Consensus 95 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 95 KRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222222233222 12233456678888888888764
No 449
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=88.40 E-value=1.8 Score=47.50 Aligned_cols=25 Identities=16% Similarity=-0.048 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 663 DHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 663 ~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
..|..||..... |+++.|..+|++.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 346666666666 7777777766654
No 450
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=88.38 E-value=1.9 Score=48.72 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=87.8
Q ss_pred hHHHHHHHhCCChhhhhccccC----------cch----h---hHHHHhcCCHHHHHHHHH-------HhCC----hhHH
Q 000961 614 QAMIAYLQQKGFPEVALHFVKD----------ERT----R---FNLALESGNIQIAVASAK-------EIDE----KDHW 665 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~~----------~~~----~---f~lal~~g~~~~A~~~a~-------~~~~----~~~w 665 (1208)
..+...+...|.++.|+..+.. +.. . -......|+++.|++..+ ..++ ...|
T Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 130 (406)
T 3sf4_A 51 SQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 3455556666666666665331 110 1 134455678877776543 2333 3477
Q ss_pred HHHHHHHHHcCC--------------------hhHHHHHHHhhcC--------------cchhHHHHHhcCCHHHHHHHH
Q 000961 666 YRLGVEALRQGN--------------------AGIVEYAYQRTKN--------------FERLSFLYLITGNMDKLSKML 711 (1208)
Q Consensus 666 ~~La~~al~~g~--------------------~~~Ae~~y~~~~d--------------~~~l~~l~~~~g~~~kl~k~~ 711 (1208)
..+|......|+ ++.|...|.+.-. +..+..+|...|+.++..+..
T Consensus 131 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 131 YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 788888888888 8888877766422 344556677788887765443
Q ss_pred HHH----HHcCCc-------hhhHHHHHhcCCHHHHHHHHHHcCCCh--------------HHHHHHHhcCChHHHHHHH
Q 000961 712 KIA----EVKNDV-------MGQFHNALYLGDVKERVKILESAGHLP--------------LAYITASVHGLQDVAERLA 766 (1208)
Q Consensus 712 ~~~----~~~~~~-------~~~~~~al~lgd~~~A~~i~~~~g~~~--------------~A~~~a~~~g~~~~a~~l~ 766 (1208)
+.+ ...++. .....++...|++++|+..|.++-... .-..+....|..++|.+..
T Consensus 211 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 332 333331 222344566788888888776542110 0112334557777776666
Q ss_pred HH
Q 000961 767 AE 768 (1208)
Q Consensus 767 ~~ 768 (1208)
++
T Consensus 291 ~~ 292 (406)
T 3sf4_A 291 LK 292 (406)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 451
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=88.35 E-value=1.5 Score=46.58 Aligned_cols=131 Identities=9% Similarity=0.055 Sum_probs=76.7
Q ss_pred HHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHHh----CChh----HHHHHHHHHHHcCC
Q 000961 617 IAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKEI----DEKD----HWYRLGVEALRQGN 677 (1208)
Q Consensus 617 ~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~~----~~~~----~w~~La~~al~~g~ 677 (1208)
...+.+.|..+.|+..++ +|. ..+ ......|+++.|++..++. +++. .|..+|......|+
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 444556666666665443 222 222 4556789999999887653 2333 38999999999999
Q ss_pred hhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHcCCCh----HHH-H-
Q 000961 678 AGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESAGHLP----LAY-I- 751 (1208)
Q Consensus 678 ~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~g~~~----~A~-~- 751 (1208)
++.|..+|.++-..+. .+..-...+ ..++..+|++++|++.|.++=... .++ .
T Consensus 90 ~~~A~~~~~~a~~~~~--------~~~~~~~~l-------------~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 148 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDT--------TRLDMYGQI-------------GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148 (272)
T ss_dssp HHHHHHHHHHHHHHST--------TCTHHHHHH-------------HHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc--------ccHHHHHHH-------------HHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 9999999988643211 111111111 235566677777777776654321 111 1
Q ss_pred --HHHhcCChHHHHHHHHH
Q 000961 752 --TASVHGLQDVAERLAAE 768 (1208)
Q Consensus 752 --~a~~~g~~~~a~~l~~~ 768 (1208)
..-..+..+.|.+..+.
T Consensus 149 ~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 11223467777776665
No 452
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=88.25 E-value=5 Score=43.73 Aligned_cols=127 Identities=8% Similarity=-0.033 Sum_probs=79.9
Q ss_pred HHhcCCHHHHHHHH-------HHhCC----hhHHHHHHHHHHHcCChhHHHHHHHhh-------cCc-------chhHHH
Q 000961 643 ALESGNIQIAVASA-------KEIDE----KDHWYRLGVEALRQGNAGIVEYAYQRT-------KNF-------ERLSFL 697 (1208)
Q Consensus 643 al~~g~~~~A~~~a-------~~~~~----~~~w~~La~~al~~g~~~~Ae~~y~~~-------~d~-------~~l~~l 697 (1208)
....|+++.|.+.. .++++ ...+..+|.....+|+++.|..+|.+. ++. ..+..+
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 125 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456666665543 34444 347889999999999999999988764 332 234556
Q ss_pred HHhcCCHHHHHHHHH----HHHHcCCch-------hhHHHHHhcCCHHHHHHHHHHcCCCh--------H--HH----HH
Q 000961 698 YLITGNMDKLSKMLK----IAEVKNDVM-------GQFHNALYLGDVKERVKILESAGHLP--------L--AY----IT 752 (1208)
Q Consensus 698 ~~~~g~~~kl~k~~~----~~~~~~~~~-------~~~~~al~lgd~~~A~~i~~~~g~~~--------~--A~----~~ 752 (1208)
|.. |+.++....-+ +....++.. ....++..+|++++|+..|.++-... . ++ .+
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~ 204 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLV 204 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 666 88888654333 333333322 12345677899999999887764321 1 11 23
Q ss_pred HHhcCChHHHHHHHHHcC
Q 000961 753 ASVHGLQDVAERLAAELG 770 (1208)
Q Consensus 753 a~~~g~~~~a~~l~~~~~ 770 (1208)
....|..+.|....++.-
T Consensus 205 ~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 205 QLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHTTCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 344588899988888753
No 453
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.21 E-value=0.63 Score=54.91 Aligned_cols=81 Identities=7% Similarity=-0.081 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhh----------------cCcchhHHHHHhcCCHHHHHHHHHHHHH-----cCC-c
Q 000961 663 DHWYRLGVEALRQGNAGIVEYAYQRT----------------KNFERLSFLYLITGNMDKLSKMLKIAEV-----KND-V 720 (1208)
Q Consensus 663 ~~w~~La~~al~~g~~~~Ae~~y~~~----------------~d~~~l~~l~~~~g~~~kl~k~~~~~~~-----~~~-~ 720 (1208)
.....||.....+|+|+.|+..|+++ .-+..|..+|...|+.++...+.+.+.. -|. .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34556666667777777777766663 1234455566666666665554443311 111 1
Q ss_pred -------hhhHHHHHhcCCHHHHHHHHHHc
Q 000961 721 -------MGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 721 -------~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
....++.+.+|.+++|+.+|.++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11224455567777777777664
No 454
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=88.10 E-value=2.3 Score=51.25 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=57.2
Q ss_pred HHHHHhCCChhhhhcccc-----Ccc---hhh---HHHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhH
Q 000961 617 IAYLQQKGFPEVALHFVK-----DER---TRF---NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGI 680 (1208)
Q Consensus 617 ~~yl~~~g~~e~Al~~~~-----~~~---~~f---~lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~ 680 (1208)
...+.+.|.++.|+..++ +|. ..+ ......|++++|.+..++ -+++..|..||......|+++.
T Consensus 30 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 109 (568)
T 2vsy_A 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109 (568)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 444455566666665443 222 222 334557888887776654 2346677788888888888888
Q ss_pred HHHHHHhhcCc--------chhHHHHHhc---CCHHHHHHHHHHH
Q 000961 681 VEYAYQRTKNF--------ERLSFLYLIT---GNMDKLSKMLKIA 714 (1208)
Q Consensus 681 Ae~~y~~~~d~--------~~l~~l~~~~---g~~~kl~k~~~~~ 714 (1208)
|..+|.++-.. ..+..+|... |+.++..+..+.+
T Consensus 110 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88877775221 2344455556 6666655544443
No 455
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=88.08 E-value=2.3 Score=46.16 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=72.2
Q ss_pred HHHHHHHhCCChhhhhccccC----------cch----h---hHHHHhcCCHHHHHHHHHH-------hCC----hhHHH
Q 000961 615 AMIAYLQQKGFPEVALHFVKD----------ERT----R---FNLALESGNIQIAVASAKE-------IDE----KDHWY 666 (1208)
Q Consensus 615 ~i~~yl~~~g~~e~Al~~~~~----------~~~----~---f~lal~~g~~~~A~~~a~~-------~~~----~~~w~ 666 (1208)
.+...+...|.++.|+..+.. +.. . -......|+++.|.+..++ .++ ...|.
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 127 (338)
T 3ro2_A 48 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 127 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 555556666666666655431 110 1 1334556777777665433 222 23677
Q ss_pred HHHHHHHHcCC--------------------hhHHHHHHHhhcC--------------cchhHHHHHhcCCHHHHHHHHH
Q 000961 667 RLGVEALRQGN--------------------AGIVEYAYQRTKN--------------FERLSFLYLITGNMDKLSKMLK 712 (1208)
Q Consensus 667 ~La~~al~~g~--------------------~~~Ae~~y~~~~d--------------~~~l~~l~~~~g~~~kl~k~~~ 712 (1208)
.+|......|+ ++.|...|.+.-. +..+..+|...|+.++..+..+
T Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (338)
T 3ro2_A 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207 (338)
T ss_dssp HHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 77888888888 7777777765421 2334556667777777654433
Q ss_pred HH----HHcCCc-------hhhHHHHHhcCCHHHHHHHHHHc
Q 000961 713 IA----EVKNDV-------MGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 713 ~~----~~~~~~-------~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
.+ ...++. .....++...|++++|++.|.++
T Consensus 208 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 208 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 222321 22233455668888877777654
No 456
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=88.07 E-value=1.9 Score=46.96 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=33.5
Q ss_pred HHHHhcCCHHHHHHHHHH-------hCC----hhHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 641 NLALESGNIQIAVASAKE-------IDE----KDHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~-------~~~----~~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
......|+++.|.+..++ .++ ...|..+|......|+++.|..+|.+.
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334556777766666543 333 237888899999999999999888775
No 457
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.96 E-value=39 Score=37.99 Aligned_cols=151 Identities=10% Similarity=0.030 Sum_probs=75.2
Q ss_pred CCCEEEEEEeC-CCCEEEEEecCC----eEEEEECCCCeEEEEec------c--------cccCEEEEEEEcC--CCEEE
Q 000961 9 SNRVKGLSFHS-KRPWILASLHSG----VIQLWDYRMGTLIDRFD------E--------HDGPVRGVHFHKS--QPLFV 67 (1208)
Q Consensus 9 ~~~V~~lafsp-dg~~Lasg~~dg----~I~iWd~~~g~~i~~l~------~--------h~~~V~~l~fsp~--~~~La 67 (1208)
...|.+|+++| +...|.+++..| .|...+ ..|+.-..+. . +...|.++++.|. ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35699999998 333444454454 344332 3333222221 1 1125788999872 34555
Q ss_pred EEECCCeEEEEECCCCeEEEEEcc-------------------CCCCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCeE
Q 000961 68 SGGDDYKIKVWNYKMHRCLFTLLG-------------------HLDYIRTVQFHHE-YPWIVSASDDQTIRIWNWQSRTC 127 (1208)
Q Consensus 68 sgs~Dg~I~vWd~~~~~~~~~l~~-------------------h~~~I~~v~fs~d-~~~l~s~s~Dg~I~iwd~~s~~~ 127 (1208)
.++..+-|...+ ..++.-..+.. ....+.+|.+.|. ...+..+..++.|...+ ..++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 555555554443 22222122211 1235889999874 34455554444444432 22322
Q ss_pred EEEEec-----C--------CCCEEEEEEeeC-CCEEEEEECCCeEEEEE
Q 000961 128 ISVLTG-----H--------NHYVMCASFHPK-EDLVVSASLDQTVRVWD 163 (1208)
Q Consensus 128 i~~l~~-----h--------~~~V~~l~~~p~-~~~l~s~s~Dg~V~vwd 163 (1208)
-..+.. + ...+.++.++|. ...|+.++..+ |...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 222211 0 124889999986 36677776544 44443
No 458
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=87.88 E-value=2.8 Score=45.36 Aligned_cols=102 Identities=8% Similarity=0.007 Sum_probs=62.4
Q ss_pred HHHhcCCHHHHHHHHHHh-----CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchh--------HHHHHhcCC-HHHH
Q 000961 642 LALESGNIQIAVASAKEI-----DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERL--------SFLYLITGN-MDKL 707 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~~-----~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l--------~~l~~~~g~-~~kl 707 (1208)
.++..|+++.|.+..++. +++..|..||...+.+|+++.|+.+|.+.-..+-- ...+...+. .+.+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccH
Confidence 346678888888876642 46789999999999999999999999987443210 011111122 2223
Q ss_pred HHHHHHHHHcCCch----hhHHHHHhcCCHHHHHHHHHHc
Q 000961 708 SKMLKIAEVKNDVM----GQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 708 ~k~~~~~~~~~~~~----~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..+.+.....-+.. ..+..++..|++++|+..|.+.
T Consensus 206 ~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 206 QQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33333333333322 2223456678888888887764
No 459
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=87.77 E-value=3.1 Score=45.49 Aligned_cols=129 Identities=10% Similarity=0.061 Sum_probs=85.3
Q ss_pred HHHHhcCCHHHHHHHHHH---hC--Chh-HHHHHHHHHHHcCChhHHHHHHHhhcCcch--------hHHH-HHhcCCHH
Q 000961 641 NLALESGNIQIAVASAKE---ID--EKD-HWYRLGVEALRQGNAGIVEYAYQRTKNFER--------LSFL-YLITGNMD 705 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~---~~--~~~-~w~~La~~al~~g~~~~Ae~~y~~~~d~~~--------l~~l-~~~~g~~~ 705 (1208)
.+....|+++.|.+..+. ++ ++. .|..+|.....+|+++.|..+|.++-.... ...+ +...|+.+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 344567889888877654 22 345 899999999999999999999999754321 1111 22368988
Q ss_pred HHHHHHHHHHHc-CCch----hhHHHHHhcCCHHHHHHHHHHcCC----ChH----H----HHHHHhcCChHHHHHHHHH
Q 000961 706 KLSKMLKIAEVK-NDVM----GQFHNALYLGDVKERVKILESAGH----LPL----A----YITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 706 kl~k~~~~~~~~-~~~~----~~~~~al~lgd~~~A~~i~~~~g~----~~~----A----~~~a~~~g~~~~a~~l~~~ 768 (1208)
+..++-+.+... .+.. ........+|++++|..+|.++=. .+. . ..+...+|..+.|..+.++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 887766655332 2221 122334556999999999988743 111 1 2355678999999888776
Q ss_pred c
Q 000961 769 L 769 (1208)
Q Consensus 769 ~ 769 (1208)
+
T Consensus 267 a 267 (308)
T 2ond_A 267 R 267 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 460
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=87.65 E-value=3.4 Score=42.51 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHhhcCcc---------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hhhHH
Q 000961 660 DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE---------RLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFH 725 (1208)
Q Consensus 660 ~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~---------~l~~l~~~~g~~~kl~k~~~~~~~~~~~-----~~~~~ 725 (1208)
.++..|..+|......|+++.|..+|.+.-+.. .+..+|...|+.++..+..+.+...... .....
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 457889999999999999999999998764433 3566788899999988777766554432 23344
Q ss_pred HHHhcCCHHHHHHHHHHcCC----Ch-------HHH----HHHHhcCChHHHHHHHHHc
Q 000961 726 NALYLGDVKERVKILESAGH----LP-------LAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 726 ~al~lgd~~~A~~i~~~~g~----~~-------~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
++..+|++++|++.|.++=. -. .++ .+....|..++|.+..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 57778999999999876522 11 111 3445678899999888874
No 461
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.63 E-value=1.3 Score=54.84 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=76.3
Q ss_pred HHHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHH
Q 000961 641 NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKL 707 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl 707 (1208)
...++.|+++.|++..++ -++...|..+|...+.+|+++.|+.+|+++=. +..+..+|...|+.++
T Consensus 441 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 441 RALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred HHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 345678999999987654 35678999999999999999999999998632 2345667778888877
Q ss_pred HHHHHHHHH-cCCch----hhHHHHHhcCCHHHHHHHHHHcCCC
Q 000961 708 SKMLKIAEV-KNDVM----GQFHNALYLGDVKERVKILESAGHL 746 (1208)
Q Consensus 708 ~k~~~~~~~-~~~~~----~~~~~al~lgd~~~A~~i~~~~g~~ 746 (1208)
...-+.+.. ..+.. ....++..+|++++|++.|.++-..
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 544444433 32322 2334577789999999999987543
No 462
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=87.55 E-value=2.8 Score=44.26 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhc
Q 000961 662 KDHWYRLGVEALRQGNAGIVEYAYQRTK 689 (1208)
Q Consensus 662 ~~~w~~La~~al~~g~~~~Ae~~y~~~~ 689 (1208)
...|..||......|+++.|+.+|.++-
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566777777777788887777776653
No 463
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=87.41 E-value=4.3 Score=37.01 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHHHh-----CCh---hHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCC---HHHHHHHH
Q 000961 643 ALESGNIQIAVASAKEI-----DEK---DHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGN---MDKLSKML 711 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-----~~~---~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~---~~kl~k~~ 711 (1208)
.+..|+++.|.+..+.. +++ ..|-.+|......|+++.|..+|.+.-... ..+ .+.+..+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~~~l- 82 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--------PTHDKAAGGLLKL- 82 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTSTTHHHHHHHH-
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--------CCCcccHHHHHHH-
Confidence 45577888887776542 234 688999999999999999999998753211 011 1111112
Q ss_pred HHHHHcCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 712 KIAEVKNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 712 ~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|++.|.+.
T Consensus 83 ------------a~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 83 ------------GLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHH
T ss_pred ------------HHHHHHcCCHHHHHHHHHHH
Confidence 24566778888888887654
No 464
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=87.40 E-value=9.3 Score=34.57 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=71.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCchhhhHHHHHhc
Q 000961 996 KLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVRQQELAAYFT 1075 (1208)
Q Consensus 996 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~~r~~el~~yft 1075 (1208)
.+..|..++..|++++|+..|+.++..-| ++.. ..++ .|.+|..... .++ -...++.. -.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~-~~~~--------~~~lg~~~~~-~~~----~~~A~~~~--~~ 64 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP----NGVY-TPNA--------LYWLGESYYA-TRN----FQLAEAQF--RD 64 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SSTT-HHHH--------HHHHHHHHHH-TTC----HHHHHHHH--HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC----CCcc-cHHH--------HHHHHHHHHH-hcc----HHHHHHHH--HH
Confidence 36788999999999999999999999887 3321 1111 1223322211 111 01111111 11
Q ss_pred ccCCChhh---HHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCchhHHHHHHHHHHHHhc
Q 000961 1076 HCNLQMPH---LRLALLNAMSVCFKNKNLATAGNFARRLLETNPTIESQSKTARQVLQAAER 1134 (1208)
Q Consensus 1076 ~~~l~~~h---~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~~~~~~~a~~~~~~~~~ 1134 (1208)
-..+.|.| ...-+..|+ ..++.++|..|....+++++..|. ...+.+|+..+.....
T Consensus 65 ~~~~~p~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 65 LVSRYPTHDKAAGGLLKLGL-SQYGEGKNTEAQQTLQQVATQYPG-SDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHCTTSTTHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHC-
T ss_pred HHHHCCCCcccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHh
Confidence 11233444 222333333 456899999999999999999998 7888888887766544
No 465
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=87.33 E-value=3.5 Score=37.35 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hhhHHHHHh
Q 000961 663 DHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHNALY 729 (1208)
Q Consensus 663 ~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~-----~~~~~~al~ 729 (1208)
..|..+|......|+++.|...|.+.-. +..+..+|...|+.++..+..+.+...... .....++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3588899999999999999999987532 223556677899999887766655443322 123344666
Q ss_pred cCCHHHHHHHHHHcC----CChHHH----HHHHhcCChHHHHHHHHH
Q 000961 730 LGDVKERVKILESAG----HLPLAY----ITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 730 lgd~~~A~~i~~~~g----~~~~A~----~~a~~~g~~~~a~~l~~~ 768 (1208)
.|++++|+++|.++- ....++ .+....|..+.|.+..+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 799999999987642 112221 334567788888877765
No 466
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=87.18 E-value=8.5 Score=42.95 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=97.5
Q ss_pred hHHHHHHHhCCChhhhhccccCcch--------------hh---HHHHhcCCHHHHHHHHHH-------hCC------hh
Q 000961 614 QAMIAYLQQKGFPEVALHFVKDERT--------------RF---NLALESGNIQIAVASAKE-------IDE------KD 663 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~~~~~--------------~f---~lal~~g~~~~A~~~a~~-------~~~------~~ 663 (1208)
..+...+...|.++.|...+..... .+ ......|+++.|.+..++ ... ..
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence 3455555666777776665442110 11 345567999888777643 222 23
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhhcC-------------cchhHHHHHhcCCHHHHHHHHHHHHHc----CCch-----
Q 000961 664 HWYRLGVEALRQGNAGIVEYAYQRTKN-------------FERLSFLYLITGNMDKLSKMLKIAEVK----NDVM----- 721 (1208)
Q Consensus 664 ~w~~La~~al~~g~~~~Ae~~y~~~~d-------------~~~l~~l~~~~g~~~kl~k~~~~~~~~----~~~~----- 721 (1208)
.+..||......|+++.|+..|.+.-. +..+..++...|+.++.....+.+... +...
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 566789999999999999999987422 223556778899999887666554322 2211
Q ss_pred ---hhHHHHHhcCCHHHHHHHHHHcCCChH--------H----HHHHHhcCChHHHHHHHHH
Q 000961 722 ---GQFHNALYLGDVKERVKILESAGHLPL--------A----YITASVHGLQDVAERLAAE 768 (1208)
Q Consensus 722 ---~~~~~al~lgd~~~A~~i~~~~g~~~~--------A----~~~a~~~g~~~~a~~l~~~ 768 (1208)
.....++..|++++|...+.++-.... + ..+....|..++|..+++.
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 278 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 278 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111235578999999999988754321 1 1334456888888887776
No 467
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=87.08 E-value=5.6 Score=44.51 Aligned_cols=128 Identities=12% Similarity=0.015 Sum_probs=84.2
Q ss_pred HHHhcCCHHHHHHHHHH-------hCCh----hHHHHHHHHHHHcCChhHHHHHHHhhcCc----------------chh
Q 000961 642 LALESGNIQIAVASAKE-------IDEK----DHWYRLGVEALRQGNAGIVEYAYQRTKNF----------------ERL 694 (1208)
Q Consensus 642 lal~~g~~~~A~~~a~~-------~~~~----~~w~~La~~al~~g~~~~Ae~~y~~~~d~----------------~~l 694 (1208)
.....|+++.|.+..++ .+++ ..+..+|.....+|+++.|+..|.+.-.. ..+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 34567999888776543 3333 23567899999999999999998775321 124
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC----c------hhhHHHHHhcCCHHHHHHHHHHcCCC-------h--HHH-----
Q 000961 695 SFLYLITGNMDKLSKMLKIAEVKND----V------MGQFHNALYLGDVKERVKILESAGHL-------P--LAY----- 750 (1208)
Q Consensus 695 ~~l~~~~g~~~kl~k~~~~~~~~~~----~------~~~~~~al~lgd~~~A~~i~~~~g~~-------~--~A~----- 750 (1208)
..+|...|+.++.....+.+..... . .....++...|++++|...|.++-.. . .+.
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 221 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 221 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 5567889999998877665543221 1 12234466789999999998765211 0 111
Q ss_pred -HHHHhcCChHHHHHHHHHc
Q 000961 751 -ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 751 -~~a~~~g~~~~a~~l~~~~ 769 (1208)
.++...|..+.|.+.+++.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHhC
Confidence 2245678888998888873
No 468
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.08 E-value=3 Score=38.97 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=51.6
Q ss_pred HHHHhcCCHHHHHHHHHHh----CC----hhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHH
Q 000961 641 NLALESGNIQIAVASAKEI----DE----KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLK 712 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~----~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~ 712 (1208)
..++..|+++.|.+..++. .+ ...|..+|......|+++.|..+|.+.-... ..+..-...+
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~-- 105 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--------GGDVKALYRR-- 105 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------SCCHHHHHHH--
T ss_pred HHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------ccCHHHHHHH--
Confidence 4455678888888876642 22 5678888888888888888888877653211 1111111111
Q ss_pred HHHHcCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 713 IAEVKNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 713 ~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
..++..+|++++|++.|.++
T Consensus 106 -----------a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 106 -----------SQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp -----------HHHHHHHTCHHHHHHHHHHH
T ss_pred -----------HHHHHHcCCHHHHHHHHHHH
Confidence 23566678888888887654
No 469
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=86.89 E-value=3.1 Score=48.63 Aligned_cols=117 Identities=13% Similarity=0.038 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCc-hhhhHH
Q 000961 992 QLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDP-VRQQEL 1070 (1208)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~-~r~~el 1070 (1208)
........|..++..|++.+|+..|+.+|...|-..--+.++..++..+...+...+-.+.+.+.+-+-+-.. .+.|+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG- 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 3344568899999999999999999999998884422223444455555444443333333333221101111 33333
Q ss_pred HHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCc
Q 000961 1071 AAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTI 1118 (1208)
Q Consensus 1071 ~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~ 1118 (1208)
+.|.+...-++.|. ..++.++|..|....++.|++.|.+
T Consensus 346 --------~~p~~~~a~~~~g~-a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 346 --------LDSANEKGLYRRGE-AQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp --------HSTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHTTC---
T ss_pred --------cCCccHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCC
Confidence 45665555555555 4678999999999999999999974
No 470
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.65 E-value=5.6 Score=39.86 Aligned_cols=115 Identities=10% Similarity=0.014 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChh-HHHHHHHHHHHHHHHHHHhhhhhhhccCC--CCc-hhh
Q 000961 992 QLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRR-EVDEVKELITIVKEYVLGLQLELKRRELK--DDP-VRQ 1067 (1208)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~e~~r~~~~--~~~-~r~ 1067 (1208)
........|..++..|+|.+|+..|+.++...|-..-.... .....+.+. .-.-|-+|..... .++.. ... .+.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE-ISCNLNLATCYNK-NKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH-HHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH-HHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 33345688999999999999999999999877722100000 111111111 1122233332211 11100 001 233
Q ss_pred hHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCc
Q 000961 1068 QELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTI 1118 (1208)
Q Consensus 1068 ~el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~ 1118 (1208)
++ +.|.+...-++.|.. .++.++|..|....++.|++.|..
T Consensus 115 l~---------~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 115 LK---------IDKNNVKALYKLGVA-NMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HH---------HSTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HH---------hCcccHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHCCCc
Confidence 32 356555555566654 478999999999999999999873
No 471
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=86.57 E-value=3 Score=36.61 Aligned_cols=70 Identities=20% Similarity=0.129 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHc
Q 000961 643 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVK 717 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~ 717 (1208)
.+..|+++.|++..++ -+++..|..||......|+++.|..+|.+. ..+.-..++.....++.......
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------l~l~~~~~~~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG------IEVAREEGTQKDLSELQDAKLKA 90 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhhhhcCCchhHHHHHHHHHHHc
Confidence 4556888888777654 245789999999999999999999999875 33334456666666665544443
Q ss_pred C
Q 000961 718 N 718 (1208)
Q Consensus 718 ~ 718 (1208)
+
T Consensus 91 ~ 91 (100)
T 3ma5_A 91 E 91 (100)
T ss_dssp H
T ss_pred c
Confidence 3
No 472
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=86.54 E-value=3.5 Score=45.82 Aligned_cols=117 Identities=14% Similarity=0.050 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCc-hhhhHH
Q 000961 992 QLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDP-VRQQEL 1070 (1208)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~-~r~~el 1070 (1208)
........|..++..|++.+|+..|+..+...|-....+.++..++..+...+...+--+.+.+.+-+-+-.. .|.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 3444568899999999999999999999999984422223444444444433332222222222111101111 33333
Q ss_pred HHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCc
Q 000961 1071 AAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTI 1118 (1208)
Q Consensus 1071 ~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~ 1118 (1208)
+.|.+...-.+.|. ..++.++|..|....++.|++.|.+
T Consensus 225 --------~~p~~~~a~~~lg~-~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 225 --------LDSNNEKGLSRRGE-AHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp --------HCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred --------hCCCcHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 34555444455554 4678999999999999999999985
No 473
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=86.48 E-value=7.2 Score=39.77 Aligned_cols=29 Identities=10% Similarity=-0.069 Sum_probs=13.9
Q ss_pred CChhHHHHHHHHHHH----cCChhHHHHHHHhh
Q 000961 660 DEKDHWYRLGVEALR----QGNAGIVEYAYQRT 688 (1208)
Q Consensus 660 ~~~~~w~~La~~al~----~g~~~~Ae~~y~~~ 688 (1208)
+++..+..||..... .++++.|.++|.+.
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 115 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDA 115 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 344444455544444 44555555555443
No 474
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=86.44 E-value=5.7 Score=40.06 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=66.4
Q ss_pred HHHHhCCChhhhhcccc---Cc--chhh---HHHHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHH
Q 000961 618 AYLQQKGFPEVALHFVK---DE--RTRF---NLALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYA 684 (1208)
Q Consensus 618 ~yl~~~g~~e~Al~~~~---~~--~~~f---~lal~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~ 684 (1208)
..+...|.++.|+..+. ++ ...+ ......|+++.|++..++ -++...|..+|......|+++.|..+
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH
Confidence 34456677777766543 22 2223 344668999999988764 24578899999999999999999999
Q ss_pred HHhhcC------------------------cchhHHHHHhcCCHHHHHHHHHHH
Q 000961 685 YQRTKN------------------------FERLSFLYLITGNMDKLSKMLKIA 714 (1208)
Q Consensus 685 y~~~~d------------------------~~~l~~l~~~~g~~~kl~k~~~~~ 714 (1208)
|.++-. +..+..+|...|+.++..+..+.+
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 988644 233445566677777766555543
No 475
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=86.34 E-value=2.2 Score=40.98 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=49.9
Q ss_pred HhcCCHHHHHHHHHHhC-----ChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cchhHHHHHhcCCHHHHHHH
Q 000961 644 LESGNIQIAVASAKEID-----EKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FERLSFLYLITGNMDKLSKM 710 (1208)
Q Consensus 644 l~~g~~~~A~~~a~~~~-----~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~l~~l~~~~g~~~kl~k~ 710 (1208)
...|++++|++..++.- ++..|-.||......|+++.|+.+|.++=. +..+..+|...|+.++....
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34567888888776532 245677899999999999999999988622 23455566677777776655
Q ss_pred HHHH
Q 000961 711 LKIA 714 (1208)
Q Consensus 711 ~~~~ 714 (1208)
-+.+
T Consensus 88 ~~~a 91 (150)
T 4ga2_A 88 YRRS 91 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 476
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=86.14 E-value=4.2 Score=36.73 Aligned_cols=87 Identities=7% Similarity=0.050 Sum_probs=52.6
Q ss_pred HHhcCCHHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHc
Q 000961 643 ALESGNIQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVK 717 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~ 717 (1208)
+...|+++.|....++ -+++..|..+|......|+++.|..+|.++-....-. .++..... ..
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~---~~---- 81 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-----REDYRQIA---KA---- 81 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----TTCHHHHH---HH----
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-----chhHHHHH---HH----
Confidence 3456777777766543 2357788999999999999999999888763321100 01110000 00
Q ss_pred CCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 718 NDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 718 ~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
......++..+|++++|++.|.++
T Consensus 82 --~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 82 --YARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhccHHHHHHHHHHH
Confidence 011234566788888888887654
No 477
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=86.12 E-value=4.8 Score=37.89 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=74.8
Q ss_pred cccHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCchh
Q 000961 987 VFNFSQLEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREVDEVKELITIVKEYVLGLQLELKRRELKDDPVR 1066 (1208)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~~r 1066 (1208)
...+......+..|..++..|++.+|+..|+.++..-| ++.. + .|.+|...... ++. ..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~----~--------~~~lg~~~~~~-g~~----~~ 70 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH----YDAR----Y--------FLGLGACRQSL-GLY----EQ 70 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHH----H--------HHHHHHHHHHT-TCH----HH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC----ccHH----H--------HHHHHHHHHHH-hhH----HH
Confidence 34566677778999999999999999999999998877 3311 1 12233322211 110 11
Q ss_pred hhHHHHHhcccCCChhhHHHHHHHHHHHHHHhhchHHHHHHHHHHhccCCCc---hhHHHHHHHHHHHHh
Q 000961 1067 QQELAAYFTHCNLQMPHLRLALLNAMSVCFKNKNLATAGNFARRLLETNPTI---ESQSKTARQVLQAAE 1133 (1208)
Q Consensus 1067 ~~el~~yft~~~l~~~h~~l~l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~---~~~~~~a~~~~~~~~ 1133 (1208)
. +.+|=.-..+.|.+-..-+..|+ ..++.|+|..|....++.+++.|.. .....++++.+..-.
T Consensus 71 A--~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 71 A--LQSYSYGALMDINEPRFPFHAAE-CHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT 137 (142)
T ss_dssp H--HHHHHHHHHHCTTCTHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHhcCCCCcHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 0 11111222234544444444444 4578999999999999999998853 334455666665443
No 478
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.79 E-value=50 Score=36.99 Aligned_cols=101 Identities=8% Similarity=0.018 Sum_probs=57.3
Q ss_pred CCeEEEEcCC----CCEEEEEEecCCCEEEEEEccCC-----CCCCCcccccccCC---ceEEEEEE-eCCcEEEEEcCC
Q 000961 367 SPRTLSYSPT----ENAVLICSDVDGGSYELYVIPKD-----SIGRGDSVQDAKKG---LGGSAIFI-ARNRFAVLDKSS 433 (1208)
Q Consensus 367 ~i~~l~~spd----g~~llv~~~~~~g~v~l~~l~~~-----~~~~~~~~~~~~~~---~i~~~~fs-~d~~~l~~~~~d 433 (1208)
.+..++++|+ ++.+....- ...++|.+++. ...... ...+.++ .....++. .+|.++++.-..
T Consensus 221 Gi~gIaLsp~~~~~~~~LYf~pl---ss~~ly~V~T~~L~~~~~~~~v-~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~ 296 (381)
T 3q6k_A 221 GIFGITLGDRDSEGNRPAYYLAG---SAIKVYSVNTKELKQKGGKLNP-ELLGNRGKYNDAIALAYDPKTKVIFFAEANT 296 (381)
T ss_dssp CEEEEEECCCCTTSCCEEEEEES---SCSEEEEEEHHHHSSTTCCCCC-EEEEECCTTCCEEEEEECTTTCEEEEEESSS
T ss_pred CceEEEecCCcCCCCeEEEEEEC---CCCcEEEEEHHHhhCcchhhce-EEeeecCCCCCcceEEEeCCCCeEEEEeccC
Confidence 6788999998 777776655 23455655422 111111 1122222 33345564 567777777778
Q ss_pred CEEEEEecCC-c----eeeeecC-Cc--ceEEEEEeCCccEEEEeC
Q 000961 434 NQVLVKNLKN-E----VVKKSIL-PI--AADAIFYAGTGNLLCRAE 471 (1208)
Q Consensus 434 g~I~Iwdl~~-~----~~~~l~~-~~--~v~~i~~s~dg~~Las~d 471 (1208)
+.|..|+..+ . ....+.. +. .+..+.+.++|.+.+.++
T Consensus 297 ~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 297 KQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp SEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 8899998876 2 2222222 22 566777776766655543
No 479
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=85.55 E-value=2.8 Score=40.53 Aligned_cols=19 Identities=11% Similarity=-0.027 Sum_probs=13.4
Q ss_pred HHHHhcCCHHHHHHHHHHc
Q 000961 725 HNALYLGDVKERVKILESA 743 (1208)
Q Consensus 725 ~~al~lgd~~~A~~i~~~~ 743 (1208)
.++..+|++++|+..|.++
T Consensus 105 ~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 105 KARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHH
Confidence 4566678888888777654
No 480
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=85.30 E-value=5.5 Score=43.39 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=78.4
Q ss_pred HHHHHHHH---H-h--CChhHHHHHHHHHHHcCChhHHHHHHHhhcCc---------chhHHHHHhcCCHHHHHHHHHHH
Q 000961 650 QIAVASAK---E-I--DEKDHWYRLGVEALRQGNAGIVEYAYQRTKNF---------ERLSFLYLITGNMDKLSKMLKIA 714 (1208)
Q Consensus 650 ~~A~~~a~---~-~--~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~---------~~l~~l~~~~g~~~kl~k~~~~~ 714 (1208)
++|....+ + + ++...|..+|.....+|+++.|..+|.++=.. ..+..++...|+.++.++.-+.+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66665543 2 2 34679999999999999999999999986332 22333445678888888777766
Q ss_pred HHcCCchhhH--HHHH----hcCCHHHHHHHHHHc----CCChHHH----HHHHhcCChHHHHHHHHHc
Q 000961 715 EVKNDVMGQF--HNAL----YLGDVKERVKILESA----GHLPLAY----ITASVHGLQDVAERLAAEL 769 (1208)
Q Consensus 715 ~~~~~~~~~~--~~al----~lgd~~~A~~i~~~~----g~~~~A~----~~a~~~g~~~~a~~l~~~~ 769 (1208)
.......... ..+. .+|++++|.++|.++ ..-..++ .+....|..+.|..+.+..
T Consensus 161 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5433221111 1111 269999999999776 2222222 3345678999999988874
No 481
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=85.23 E-value=8.5 Score=39.20 Aligned_cols=125 Identities=13% Similarity=0.010 Sum_probs=84.7
Q ss_pred HHhcCCHHHHHHHHH---HhCChhHHHHHHHHHHHcC----ChhHHHHHHHhhcCc------chhHHHHHh----cCCHH
Q 000961 643 ALESGNIQIAVASAK---EIDEKDHWYRLGVEALRQG----NAGIVEYAYQRTKNF------ERLSFLYLI----TGNMD 705 (1208)
Q Consensus 643 al~~g~~~~A~~~a~---~~~~~~~w~~La~~al~~g----~~~~Ae~~y~~~~d~------~~l~~l~~~----~g~~~ 705 (1208)
....+|+++|++..+ +.+++..+..||..... + +++.|.+.|.+.-+. ..|..+|.. .+|.+
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~ 106 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVA 106 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHH
Confidence 334688888877654 46788999999999887 7 899999999887433 233445554 78999
Q ss_pred HHHHHHHHHHHcCC----chhhHHH---HHh----cCCHHHHHHHHHHc----CCChHHHHHHHhc----C-----ChHH
Q 000961 706 KLSKMLKIAEVKND----VMGQFHN---ALY----LGDVKERVKILESA----GHLPLAYITASVH----G-----LQDV 761 (1208)
Q Consensus 706 kl~k~~~~~~~~~~----~~~~~~~---al~----lgd~~~A~~i~~~~----g~~~~A~~~a~~~----g-----~~~~ 761 (1208)
+..+.-+.+...++ ....+.. +.. .+|+++|++.|.++ +...-.+.++.-+ | +.++
T Consensus 107 ~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~ 186 (212)
T 3rjv_A 107 HAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQK 186 (212)
T ss_dssp HHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHH
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 98888888877777 3333222 333 56899999999887 4443333333322 3 5677
Q ss_pred HHHHHHH
Q 000961 762 AERLAAE 768 (1208)
Q Consensus 762 a~~l~~~ 768 (1208)
|.+..+.
T Consensus 187 A~~~~~~ 193 (212)
T 3rjv_A 187 ALHWLNV 193 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 482
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=85.08 E-value=74 Score=39.05 Aligned_cols=245 Identities=10% Similarity=-0.002 Sum_probs=118.2
Q ss_pred eEEEE-EccCCCEEEEEe-CC----CcEEEEeCCCCeeEEE-ee-cCCC------CEEEEEEeCCCCEEEEEECCCeeeE
Q 000961 251 VSCVM-FHAKQDIIVSNS-ED----KSIRVWDVTKRTGVQT-FR-REHD------RFWILASHPEMNLLAAGHDSGMIVF 316 (1208)
Q Consensus 251 V~~l~-~sp~g~~l~sgs-~d----g~I~vwd~~~~~~~~~-~~-~~~~------~i~~la~sp~~~~la~g~~~gi~v~ 316 (1208)
...+. ++|++++++.+- .. ..++++|+.+++.+.. +. .... ++..++|..+..++.+.....-
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~--- 207 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKN--- 207 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTT---
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCC---
Confidence 34455 889988876543 22 3599999999887631 22 0001 1234467633333332211100
Q ss_pred eeCCCcceEEecCCEEEEEeCCeEEEEEccCCcceeeEeecCCCCCCCCcCCeEEEEcCCCCE----EEEEEec--CCCE
Q 000961 317 KLERERPAFAVSGDSLFYAKDRFLRYYEFSTQKDTQVIPIRRPGSTSLNQSPRTLSYSPTENA----VLICSDV--DGGS 390 (1208)
Q Consensus 317 ~l~~~~~~~s~~~~~L~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~----llv~~~~--~~g~ 390 (1208)
.+.. .+ ....++.|.+-+.......-+..... . ...+...++++++ +++.... ....
T Consensus 208 ~~~~-------~~------~~~~v~~~~~Gt~~~~~~~v~~~~~~-~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 270 (711)
T 4hvt_A 208 EITS-------SL------YPNSLYIWKRGESIEKAKKLFEVPKE-Y---IYVSAGKLLSDTISSSLIFISANKDFYNYD 270 (711)
T ss_dssp CBCT-------TS------SBCEEEEEETTSCGGGCEEEEECCTT-S---CEEEEEESSCTTTCSSEEEEEEESSSSCEE
T ss_pred CcCc-------CC------CCCEEEEEECCCChHHCeEEeccCCC-c---eEEEEEEecCCCceEEEEEEEEecccCcee
Confidence 0000 00 24667888877754333333332221 1 2234556677763 4443331 2233
Q ss_pred EEEEEccCCCCCCCcccccccCCceEEEEEEeCCcEEEEEc----------CCCEEEEEecCCc--------eeee-ecC
Q 000961 391 YELYVIPKDSIGRGDSVQDAKKGLGGSAIFIARNRFAVLDK----------SSNQVLVKNLKNE--------VVKK-SIL 451 (1208)
Q Consensus 391 v~l~~l~~~~~~~~~~~~~~~~~~i~~~~fs~d~~~l~~~~----------~dg~I~Iwdl~~~--------~~~~-l~~ 451 (1208)
+.+.+... ..+... .+..... ..+..+.++++++... ..+.|.+.++.+. ..+. +..
T Consensus 271 ~~~~~~~~-~~~~~~-~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (711)
T 4hvt_A 271 NYILDTKY-KNLKLQ-KINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP 346 (711)
T ss_dssp EEEEECSS-SSCEEE-ECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC
T ss_pred EEEEcCCC-CCCcce-EeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECC
Confidence 33333321 112111 1212222 1234566777776442 2567888888742 1222 332
Q ss_pred Cc--ceEEEEEeCCccEEEE-eC--CeEEEEEcCCCe-EEEE-EeC---CCeeEEEECCCCCEEE-EEeC----CeEEEE
Q 000961 452 PI--AADAIFYAGTGNLLCR-AE--DRVVIFDLQQRL-VLGD-LQT---PFVKYVVWSNDMESVA-LLSK----HAIIIA 516 (1208)
Q Consensus 452 ~~--~v~~i~~s~dg~~Las-~d--g~v~lwdl~~~~-~l~~-~~~---~~v~~v~ws~dg~~la-~~s~----~~i~i~ 516 (1208)
.. .+..+.+..+..++.. .+ ..+.++|+.+++ .... +.. ..+..+..++++..++ ..+. ..++.+
T Consensus 347 ~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~ 426 (711)
T 4hvt_A 347 TANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLW 426 (711)
T ss_dssp CTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEE
T ss_pred CCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEE
Confidence 22 7788888887433332 24 357888887764 2233 322 3455566667765444 3333 237777
Q ss_pred ecC
Q 000961 517 SKK 519 (1208)
Q Consensus 517 ~~~ 519 (1208)
+..
T Consensus 427 d~~ 429 (711)
T 4hvt_A 427 VKT 429 (711)
T ss_dssp CTT
T ss_pred eCC
Confidence 654
No 483
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=85.01 E-value=3.2 Score=51.41 Aligned_cols=133 Identities=15% Similarity=0.011 Sum_probs=94.4
Q ss_pred CcchhhHHHHhcCCHHHHHHHHHHh-------------CChhHHHHHHHHHHHcCChhHHHHHHHhhcC--------cch
Q 000961 635 DERTRFNLALESGNIQIAVASAKEI-------------DEKDHWYRLGVEALRQGNAGIVEYAYQRTKN--------FER 693 (1208)
Q Consensus 635 ~~~~~f~lal~~g~~~~A~~~a~~~-------------~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d--------~~~ 693 (1208)
++...|..++..|++++|++..++. ++...|..+|...+.+|+++.|...|.++-. +..
T Consensus 393 ~~~a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 472 (681)
T 2pzi_A 393 DVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWY 472 (681)
T ss_dssp STTHHHHHHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CcchHHhhcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHH
Confidence 5556778889999999999887653 2467899999999999999999999987532 233
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcC-Cc----hhhHHHHHhcCCHHHHHHHHHHcC----CChHHH----HHHHhcCChH
Q 000961 694 LSFLYLITGNMDKLSKMLKIAEVKN-DV----MGQFHNALYLGDVKERVKILESAG----HLPLAY----ITASVHGLQD 760 (1208)
Q Consensus 694 l~~l~~~~g~~~kl~k~~~~~~~~~-~~----~~~~~~al~lgd~~~A~~i~~~~g----~~~~A~----~~a~~~g~~~ 760 (1208)
+..+|...|+.++..+.-+.+.... +. .....++..+|++++ ++.|.++= ....|+ .+....|..+
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH
Confidence 4567888999999876655554332 22 223345667788888 77776642 222232 3455678899
Q ss_pred HHHHHHHH
Q 000961 761 VAERLAAE 768 (1208)
Q Consensus 761 ~a~~l~~~ 768 (1208)
+|.+..++
T Consensus 552 ~A~~~~~~ 559 (681)
T 2pzi_A 552 GAVRTLDE 559 (681)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988886
No 484
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=84.96 E-value=1.8 Score=47.02 Aligned_cols=116 Identities=8% Similarity=-0.062 Sum_probs=72.5
Q ss_pred HHhcCCHHHHHHHHHHh-------CC----hhHHHHHHHHHHHcCChhHHHHHHHhhcC---------------cchhHH
Q 000961 643 ALESGNIQIAVASAKEI-------DE----KDHWYRLGVEALRQGNAGIVEYAYQRTKN---------------FERLSF 696 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-------~~----~~~w~~La~~al~~g~~~~Ae~~y~~~~d---------------~~~l~~ 696 (1208)
....|+++.|++..++. ++ ...+..||......|+++.|..+|.++-+ +..+..
T Consensus 125 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 34567899998877642 11 12688999999999999999999988641 134445
Q ss_pred HHHhcCCHHHHHHHHHHH----HHcCCch-------hhHHHHHhcC-CHHHHHHHHHHcCCChHHHHHHHhcCChHHHHH
Q 000961 697 LYLITGNMDKLSKMLKIA----EVKNDVM-------GQFHNALYLG-DVKERVKILESAGHLPLAYITASVHGLQDVAER 764 (1208)
Q Consensus 697 l~~~~g~~~kl~k~~~~~----~~~~~~~-------~~~~~al~lg-d~~~A~~i~~~~g~~~~A~~~a~~~g~~~~a~~ 764 (1208)
+|...|+.++..+..+.+ ...++.. ....++..+| ++++|++.|.+ |+.+++..|....+..
T Consensus 205 ~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~------Al~i~~~~~~~~~~~~ 278 (293)
T 3u3w_A 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK------ASFFFDILEMHAYKEA 278 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH------HHHHHHHTTCTGGGGG
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH------HHHHHHHhCCHHHHHH
Confidence 667788888866544333 2333321 1223345566 45777766644 5666666666544333
No 485
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.96 E-value=44 Score=36.66 Aligned_cols=156 Identities=6% Similarity=0.027 Sum_probs=99.7
Q ss_pred CCCEEEEEEeC---CCCEEEEEecCCeEEEEECCC-------CeEEEEecccccCEEEEEEEcCCCEEEEEECCCeEEEE
Q 000961 9 SNRVKGLSFHS---KRPWILASLHSGVIQLWDYRM-------GTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVW 78 (1208)
Q Consensus 9 ~~~V~~lafsp---dg~~Lasg~~dg~I~iWd~~~-------g~~i~~l~~h~~~V~~l~fsp~~~~Lasgs~Dg~I~vW 78 (1208)
...|.++..-+ +..+++..+.+|.|+--.+.. |.....++.. ..+..+........++..+.+|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 34566654433 578999999999999887643 2333344443 445555555566788888999999888
Q ss_pred ECC--CC---------eEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-------eEEEEE--ecCCCCE
Q 000961 79 NYK--MH---------RCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSR-------TCISVL--TGHNHYV 138 (1208)
Q Consensus 79 d~~--~~---------~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~-------~~i~~l--~~h~~~V 138 (1208)
... .- .....+. ..+.|.++...+++..++.++..|.++.-.+..- +-+..+ ....+.+
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred ECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 776 21 1111222 3456777777777778999999999988875321 222222 2223456
Q ss_pred EEEEEeeCCCEEEEEECCCeEEEEECCC
Q 000961 139 MCASFHPKEDLVVSASLDQTVRVWDIGA 166 (1208)
Q Consensus 139 ~~l~~~p~~~~l~s~s~Dg~V~vwdl~~ 166 (1208)
..+....+++.++..+.+|.+..++...
T Consensus 252 v~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 252 VGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 6655555556788888888888887654
No 486
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=84.95 E-value=3.2 Score=42.24 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=34.8
Q ss_pred HHhcCCHHHHHHHHHHh-----CChhHHHH----------------HHHHHHHcCChhHHHHHHHhh
Q 000961 643 ALESGNIQIAVASAKEI-----DEKDHWYR----------------LGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 643 al~~g~~~~A~~~a~~~-----~~~~~w~~----------------La~~al~~g~~~~Ae~~y~~~ 688 (1208)
+++.|+++.|++..++. +++..|.. ||......|+++.|..+|.+.
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45677788877776542 23556777 999999999999999999875
No 487
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=84.86 E-value=3.7 Score=39.97 Aligned_cols=131 Identities=10% Similarity=-0.045 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHcceeEecChhHH-HHHHHHHHHHHHHHHHhhhhhhhccCCCCc-hhhhHH
Q 000961 993 LEEKLKASYKATTTGKFTEALRLFLSILHTIPLIVVDSRREV-DEVKELITIVKEYVLGLQLELKRRELKDDP-VRQQEL 1070 (1208)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~e~~r~~~~~~~-~r~~el 1070 (1208)
-..-++.|..++..|+|++|+.+|+..|...|- +...+ -.....-..|-.-.-.+..++.|-+-+-.. .|.||+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~----~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT----MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT----SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----CcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344579999999999999999999999999993 11100 001111112333333334444333211123 566665
Q ss_pred HHHhcccCCChhhHHHH----HHHHHHHHHHhhchHHHHHHHHHHhccCCCc---hhHHHHHHHHHH
Q 000961 1071 AAYFTHCNLQMPHLRLA----LLNAMSVCFKNKNLATAGNFARRLLETNPTI---ESQSKTARQVLQ 1130 (1208)
Q Consensus 1071 ~~yft~~~l~~~h~~l~----l~~a~~~~~k~~n~~~a~~~a~~ll~~~~~~---~~~~~~a~~~~~ 1130 (1208)
|=....+.|.+-..= .|.+. .-.+.++|..|-.--++-|++.|.. -+..+.++|.+.
T Consensus 87 --~n~~~e~~pd~~~A~~~~~~~rG~-aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 87 --FNRRGELNQDEGKLWISAVYSRAL-ALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp --HHHHCCTTSTHHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred --hhccccCCCchHHHHHHHHHhHHH-HHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 223345577665444 56666 4578999999999999999998863 234445555443
No 488
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.74 E-value=0.0028 Score=71.81 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhhcCcc---hhHHHHHhcCCHHHHH
Q 000961 646 SGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFE---RLSFLYLITGNMDKLS 708 (1208)
Q Consensus 646 ~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~---~l~~l~~~~g~~~kl~ 708 (1208)
.+++++|.++|...+.|.+|.+||++-|..+.+..|..+|.|.+|.. .+.......|..+.|.
T Consensus 38 i~~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv 103 (624)
T 3lvg_A 38 IGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELV 103 (624)
T ss_dssp GCCSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHH
T ss_pred ccccHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHH
Confidence 46799999999999999999999999999999999999999987653 3333333345544444
No 489
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=84.63 E-value=10 Score=40.79 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=93.9
Q ss_pred cCEEEEEEEcCCCEEEEEECCCeEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000961 52 GPVRGVHFHKSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVL 131 (1208)
Q Consensus 52 ~~V~~l~fsp~~~~Lasgs~Dg~I~vWd~~~~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~s~~~i~~l 131 (1208)
..|..|+...... ++. . ||.|..|-......+..-......|..++...+.. ++. . ||.|..|-....-.+..-
T Consensus 24 ~~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCC
Confidence 3577776654432 333 4 89999997654221111111233566776655443 333 4 899999976532111111
Q ss_pred ecCCCCEEEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEE
Q 000961 132 TGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAA 211 (1208)
Q Consensus 132 ~~h~~~V~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 211 (1208)
..-...|..++.... ..+..+ ||.|..|-......... + ......|..++
T Consensus 98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-~--------------------------~~~~~~i~~i~ 147 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-P--------------------------AEAQSGVTALD 147 (282)
T ss_dssp GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-C--------------------------GGGGSSEEEEE
T ss_pred cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-C--------------------------ccCCCCeEEEE
Confidence 111346777776533 444445 99999997654222110 0 00123355555
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEeecCcCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 000961 212 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTK 279 (1208)
Q Consensus 212 ~sp~g~~L~sgs~dg~I~iwd~~~~~~~~~~~l~~h~~~V~~l~~sp~g~~l~sgs~dg~I~vwd~~~ 279 (1208)
..... .++ -. ||.|..|-....... .........|..++...+.. ++. .||.|..|-...
T Consensus 148 ~G~~~-~~~-l~-~G~v~~wG~n~~gql--g~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 148 GGVYT-ALA-VK-NGGVIAWGDNYFGQT--TVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNR 207 (282)
T ss_dssp ECSSE-EEE-EE-TTEEEEEECCTTSTT--SCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCT
T ss_pred cccCE-EEE-EE-CCEEEEecCCCCCCC--CCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCC
Confidence 44332 222 23 688888876553321 11111234577776654333 223 589999996543
No 490
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.61 E-value=0.028 Score=63.92 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=106.9
Q ss_pred hHHHHHHHhCCChhhhhccccCcch--hh-HHHHhcCCHHHHHHHHHHhCChhHHHHHHHHHHHcCChhHHHHHHHhh--
Q 000961 614 QAMIAYLQQKGFPEVALHFVKDERT--RF-NLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRT-- 688 (1208)
Q Consensus 614 ~~i~~yl~~~g~~e~Al~~~~~~~~--~f-~lal~~g~~~~A~~~a~~~~~~~~w~~La~~al~~g~~~~Ae~~y~~~-- 688 (1208)
+.+..-+...|.++.|..++..-.. |. ...+.+|++..|++.|++.++++.|+..-.+|+..+++..|..|-..+
T Consensus 148 q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv 227 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 227 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence 6677777788888888877654332 11 344568999999999999999999999999999999999999987663
Q ss_pred --cCcchhHHHHHhcCCHHHHHHHHHHHHHc-CCchhhHH-----------------HHHhc--CCHHHHHHHHHHcCCC
Q 000961 689 --KNFERLSFLYLITGNMDKLSKMLKIAEVK-NDVMGQFH-----------------NALYL--GDVKERVKILESAGHL 746 (1208)
Q Consensus 689 --~d~~~l~~l~~~~g~~~kl~k~~~~~~~~-~~~~~~~~-----------------~al~l--gd~~~A~~i~~~~g~~ 746 (1208)
-..+.+...|...|-+++|-.+.+.+.-. ...++.|. +-++- =++.+-++...++..|
T Consensus 228 hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 228 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 46677777777788888777666644310 01111111 11111 1345566777888889
Q ss_pred hHHHHHHHhcCChHHHHH
Q 000961 747 PLAYITASVHGLQDVAER 764 (1208)
Q Consensus 747 ~~A~~~a~~~g~~~~a~~ 764 (1208)
+++.-++..+..|+.|..
T Consensus 308 ~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcchhHHHHHH
Confidence 999988888888886654
No 491
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=84.59 E-value=3.7 Score=39.94 Aligned_cols=25 Identities=4% Similarity=-0.190 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 664 HWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 664 ~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
+|..+|......|+++.|..+|.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999876
No 492
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=84.55 E-value=2.5 Score=42.53 Aligned_cols=26 Identities=4% Similarity=-0.185 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHhh
Q 000961 663 DHWYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 663 ~~w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
..|..+|...+..|+++.|..+|.++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56666666666666666666666554
No 493
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=84.29 E-value=2.6 Score=45.44 Aligned_cols=108 Identities=11% Similarity=-0.050 Sum_probs=67.8
Q ss_pred HHHHHHhCCChhhhhccccCcc-------hhh---HHHHhcCCHHHHHHHHHHhCC-------hhHHHHHHHHHHHcCCh
Q 000961 616 MIAYLQQKGFPEVALHFVKDER-------TRF---NLALESGNIQIAVASAKEIDE-------KDHWYRLGVEALRQGNA 678 (1208)
Q Consensus 616 i~~yl~~~g~~e~Al~~~~~~~-------~~f---~lal~~g~~~~A~~~a~~~~~-------~~~w~~La~~al~~g~~ 678 (1208)
.+..|...|.++.|.+.+.... ..| .++++.++|+.|+...+.... ...+-.||..+...|++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 4556677777788777654221 233 456778888888888764321 23678888888888888
Q ss_pred hHHHHHHHhhcCcch-hH-HHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHHHc
Q 000961 679 GIVEYAYQRTKNFER-LS-FLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILESA 743 (1208)
Q Consensus 679 ~~Ae~~y~~~~d~~~-l~-~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~~~ 743 (1208)
+.|+.+|.+...-.. -. .. +.+-. ...+...+|+.++|..+|.+.
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~-------da~~~-------------~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACAR-------AIAWY-------------LAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHH-------HHHHH-------------HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccH-------HHHHH-------------HHHHHHHcCCHHHHHHHHHHH
Confidence 888888887632110 00 00 11111 124566678888888888765
No 494
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=84.14 E-value=3.4 Score=48.91 Aligned_cols=29 Identities=7% Similarity=0.019 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHhhc
Q 000961 661 EKDHWYRLGVEALRQGNAGIVEYAYQRTK 689 (1208)
Q Consensus 661 ~~~~w~~La~~al~~g~~~~Ae~~y~~~~ 689 (1208)
+...|..|-..+.+.|+++.|.+.|.++.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 132 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMK 132 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 495
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.05 E-value=59 Score=35.61 Aligned_cols=205 Identities=9% Similarity=-0.029 Sum_probs=115.1
Q ss_pred CEEEEEEeCCCCEEEEEecCCeEEEEE---CCC------CeEEEEe-c-ccccCEEEEEEEc---CCCEEEEEECCCeEE
Q 000961 11 RVKGLSFHSKRPWILASLHSGVIQLWD---YRM------GTLIDRF-D-EHDGPVRGVHFHK---SQPLFVSGGDDYKIK 76 (1208)
Q Consensus 11 ~V~~lafspdg~~Lasg~~dg~I~iWd---~~~------g~~i~~l-~-~h~~~V~~l~fsp---~~~~Lasgs~Dg~I~ 76 (1208)
.+..+........|+.-+..|.++-.. +.. |..+..+ . .....|.++..-+ +..++++.+.+|.|+
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 344444444555566566677655443 322 2322111 1 1234555554433 577999999999999
Q ss_pred EEECCC-------CeEEEEEccCCCCEEEEEEcCCCCEEEEEECCCcEEEEECC--C---------CeEEEEEecCCCCE
Q 000961 77 VWNYKM-------HRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ--S---------RTCISVLTGHNHYV 138 (1208)
Q Consensus 77 vWd~~~-------~~~~~~l~~h~~~I~~v~fs~d~~~l~s~s~Dg~I~iwd~~--s---------~~~i~~l~~h~~~V 138 (1208)
.-.+.. +.....+.. .+.+..+........|+..+..|.+..+... . |...-.+. ....|
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~V 200 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRL 200 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCE
T ss_pred EeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEE
Confidence 987653 222223333 4556666666666788888999998888766 2 11111122 34567
Q ss_pred EEEEEeeCCCEEEEEECCCeEEEEECCCCccccccCCCcceeeccccccccccccceEEEEEeccCCCeEEEEEcCCCCE
Q 000961 139 MCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPL 218 (1208)
Q Consensus 139 ~~l~~~p~~~~l~s~s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ 218 (1208)
.++...+++..++.++..|.++.-.+.......... .+.....+......+..+....+...
T Consensus 201 v~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~------------------~G~~~~~l~~~~d~lv~~~~~~~~~~ 262 (327)
T 3uc1_A 201 LSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGG------------------KGVLTVMYDRRRGRLVGALIVDDDSE 262 (327)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTS------------------CCEESSCCCTTTCSEEEEEEECTTCE
T ss_pred EEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCC------------------CcEEEEEecCCCCeEEEEEEeCCCcc
Confidence 777776667789999999999888876543221100 00001111111233444443344456
Q ss_pred EEEEeCCCcEEEEECCC
Q 000961 219 IVSGADDRQVKLWRMNE 235 (1208)
Q Consensus 219 L~sgs~dg~I~iwd~~~ 235 (1208)
++..+.+|.+..++...
T Consensus 263 i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 263 LYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEGGGCEEEEEGGG
T ss_pred EEEEcCCCeEEEEehhh
Confidence 77777788877776543
No 496
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=82.78 E-value=5.2 Score=38.15 Aligned_cols=82 Identities=11% Similarity=0.049 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhcCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hhhHHHHH
Q 000961 662 KDHWYRLGVEALRQGNAGIVEYAYQRTKNF--------ERLSFLYLITGNMDKLSKMLKIAEVKNDV-----MGQFHNAL 728 (1208)
Q Consensus 662 ~~~w~~La~~al~~g~~~~Ae~~y~~~~d~--------~~l~~l~~~~g~~~kl~k~~~~~~~~~~~-----~~~~~~al 728 (1208)
...|..+|..+...|+++.|..+|.+.-.. ..+..+|...|+.++..+..+.+...... .....++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456899999999999999999999875332 33455677788888877666555443321 12233455
Q ss_pred hcCCHHHHHHHHHHc
Q 000961 729 YLGDVKERVKILESA 743 (1208)
Q Consensus 729 ~lgd~~~A~~i~~~~ 743 (1208)
.+|++++|++.|.++
T Consensus 93 ~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 93 ALGKFRAALRDYETV 107 (166)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 678888888777654
No 497
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=82.47 E-value=6.6 Score=46.35 Aligned_cols=130 Identities=11% Similarity=-0.010 Sum_probs=91.7
Q ss_pred HHHHhcCCHHHHHHHHHHhC------ChhHHHHHHHHHHHc---------CChhHHHHHHHhhcC---------cchhHH
Q 000961 641 NLALESGNIQIAVASAKEID------EKDHWYRLGVEALRQ---------GNAGIVEYAYQRTKN---------FERLSF 696 (1208)
Q Consensus 641 ~lal~~g~~~~A~~~a~~~~------~~~~w~~La~~al~~---------g~~~~Ae~~y~~~~d---------~~~l~~ 696 (1208)
+.+-+.|++++|+++..++. +...|..|=..+... ++++.|...|.++.. |..+..
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44556889999988876543 456677766555443 346778888887643 456777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCc------hhhHHHHHhcCCHHHHHHHHHHc---CC------ChHHHHHHHhcCChHH
Q 000961 697 LYLITGNMDKLSKMLKIAEVKNDV------MGQFHNALYLGDVKERVKILESA---GH------LPLAYITASVHGLQDV 761 (1208)
Q Consensus 697 l~~~~g~~~kl~k~~~~~~~~~~~------~~~~~~al~lgd~~~A~~i~~~~---g~------~~~A~~~a~~~g~~~~ 761 (1208)
.|+..|+.++..++.+.....|-. +.....+...|++++|.++|.+. |. |..-+......|..++
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 889999999998887766666532 23344466689999999999764 32 2223455678899999
Q ss_pred HHHHHHHcC
Q 000961 762 AERLAAELG 770 (1208)
Q Consensus 762 a~~l~~~~~ 770 (1208)
|.++++.|.
T Consensus 194 A~~ll~~Mr 202 (501)
T 4g26_A 194 VYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 498
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=81.60 E-value=3.2 Score=46.95 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHhh
Q 000961 665 WYRLGVEALRQGNAGIVEYAYQRT 688 (1208)
Q Consensus 665 w~~La~~al~~g~~~~Ae~~y~~~ 688 (1208)
|..+|..+..+|+++.|..+|.++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kA 249 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKV 249 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 555666666666666666666554
No 499
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=81.53 E-value=2.9 Score=37.88 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHhhcCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchhhHHHHHhcCCHHHHHHHHH
Q 000961 662 KDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVKERVKILE 741 (1208)
Q Consensus 662 ~~~w~~La~~al~~g~~~~Ae~~y~~~~d~~~l~~l~~~~g~~~kl~k~~~~~~~~~~~~~~~~~al~lgd~~~A~~i~~ 741 (1208)
...|..||......|+++.|..+|.+.-.. .-.+.+-...+ ..++..+|++++|+..|.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l-------------~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFY-------------AMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHH-------------HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHH-------------HHHHHHcCCHHHHHHHHH
Confidence 467899999999999999999999875322 11111211112 235666788888887776
Q ss_pred Hc
Q 000961 742 SA 743 (1208)
Q Consensus 742 ~~ 743 (1208)
++
T Consensus 86 ~a 87 (117)
T 3k9i_A 86 KI 87 (117)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 500
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=81.52 E-value=4.7 Score=45.78 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=40.8
Q ss_pred HHHHhCCChhhhhcccc-----Ccch------hhHHHHhcCC-HHHHHHHHHH-----hCChhHHHHHHHHHHHcCChhH
Q 000961 618 AYLQQKGFPEVALHFVK-----DERT------RFNLALESGN-IQIAVASAKE-----IDEKDHWYRLGVEALRQGNAGI 680 (1208)
Q Consensus 618 ~yl~~~g~~e~Al~~~~-----~~~~------~f~lal~~g~-~~~A~~~a~~-----~~~~~~w~~La~~al~~g~~~~ 680 (1208)
..+.+.|..+.|+..+. +|.. +-......|+ ++.|++..++ -++...|..+|......|+++.
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHH
Confidence 34556677777766543 2321 1133444564 7766666543 2345667777777777777777
Q ss_pred HHHHHHhh
Q 000961 681 VEYAYQRT 688 (1208)
Q Consensus 681 Ae~~y~~~ 688 (1208)
|..+|.++
T Consensus 185 Al~~~~ka 192 (382)
T 2h6f_A 185 ELEFIADI 192 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
Done!