Query 000962
Match_columns 1208
No_of_seqs 771 out of 5757
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 11:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-87 3E-92 814.5 46.7 759 16-816 7-786 (889)
2 PLN03210 Resistant to P. syrin 100.0 5E-65 1.1E-69 657.6 50.1 692 170-1110 183-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-43 2.7E-48 394.3 14.4 281 176-466 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 4.1E-37 8.9E-42 401.1 27.2 522 538-1127 69-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 2.5E-36 5.5E-41 393.7 27.2 497 562-1126 69-583 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 3.7E-30 8.1E-35 265.8 -18.0 468 588-1126 65-540 (565)
7 KOG0618 Serine/threonine phosp 99.9 8.7E-28 1.9E-32 274.2 -8.0 461 585-1155 39-510 (1081)
8 KOG0444 Cytoskeletal regulator 99.9 3.9E-27 8.5E-32 255.4 -6.9 364 589-1127 5-375 (1255)
9 KOG4194 Membrane glycoprotein 99.9 3.2E-25 6.9E-30 239.8 2.2 337 593-1053 80-427 (873)
10 PLN03210 Resistant to P. syrin 99.9 1.9E-22 4E-27 262.1 25.1 353 557-1082 553-910 (1153)
11 KOG0472 Leucine-rich repeat pr 99.9 4.6E-27 1E-31 243.1 -15.1 468 539-1104 46-541 (565)
12 KOG4194 Membrane glycoprotein 99.9 1.5E-23 3.1E-28 227.0 6.2 384 537-1052 51-449 (873)
13 KOG0618 Serine/threonine phosp 99.9 1.1E-24 2.4E-29 249.1 -7.9 276 542-856 25-321 (1081)
14 KOG0444 Cytoskeletal regulator 99.8 4.7E-23 1E-27 224.0 -4.2 266 539-856 33-302 (1255)
15 PRK15387 E3 ubiquitin-protein 99.6 1.5E-14 3.3E-19 173.5 16.4 116 970-1103 342-457 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 1.9E-14 4.1E-19 172.7 14.6 75 591-674 201-275 (788)
17 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.5E-20 159.2 -1.6 124 576-702 76-203 (498)
18 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.5E-20 159.3 -2.9 283 536-857 65-358 (498)
19 KOG0617 Ras suppressor protein 99.4 9.9E-15 2.1E-19 134.3 -4.2 103 589-693 31-133 (264)
20 PRK04841 transcriptional regul 99.4 3.3E-11 7.1E-16 157.3 24.5 276 197-516 31-332 (903)
21 PRK15370 E3 ubiquitin-protein 99.3 2.7E-12 5.9E-17 155.7 11.1 53 776-833 179-231 (754)
22 KOG0617 Ras suppressor protein 99.3 2.9E-14 6.3E-19 131.3 -5.6 145 560-715 31-176 (264)
23 PRK15370 E3 ubiquitin-protein 99.3 5.7E-12 1.2E-16 152.9 12.0 75 592-673 221-295 (754)
24 PRK00411 cdc6 cell division co 99.3 1.2E-09 2.5E-14 127.4 26.6 304 169-494 28-358 (394)
25 TIGR02928 orc1/cdc6 family rep 99.1 5.8E-09 1.3E-13 120.2 24.9 302 171-495 15-351 (365)
26 TIGR03015 pepcterm_ATPase puta 99.1 5.2E-09 1.1E-13 115.0 21.3 182 198-387 43-242 (269)
27 KOG4658 Apoptotic ATPase [Sign 99.1 5.8E-11 1.3E-15 146.5 5.6 123 590-715 544-671 (889)
28 COG2909 MalT ATP-dependent tra 99.1 6.3E-09 1.4E-13 121.2 21.0 290 181-519 25-341 (894)
29 PF01637 Arch_ATPase: Archaeal 99.1 8.4E-10 1.8E-14 118.9 12.8 195 173-382 1-233 (234)
30 cd00116 LRR_RI Leucine-rich re 99.0 5.3E-11 1.1E-15 135.1 -1.9 34 800-833 250-289 (319)
31 PRK00080 ruvB Holliday junctio 99.0 3.4E-09 7.4E-14 119.0 12.3 278 171-495 25-311 (328)
32 cd00116 LRR_RI Leucine-rich re 98.9 2.4E-10 5.3E-15 129.6 1.7 238 587-858 19-291 (319)
33 PF05729 NACHT: NACHT domain 98.9 8.9E-09 1.9E-13 104.0 12.3 144 199-347 1-163 (166)
34 TIGR00635 ruvB Holliday juncti 98.9 2.5E-08 5.5E-13 111.5 16.8 270 171-495 4-290 (305)
35 COG2256 MGS1 ATPase related to 98.8 4E-08 8.6E-13 105.1 13.3 178 167-379 26-208 (436)
36 KOG4341 F-box protein containi 98.8 1.1E-10 2.4E-15 123.8 -8.4 158 991-1158 292-462 (483)
37 PRK06893 DNA replication initi 98.8 1.9E-07 4.2E-12 98.6 16.0 156 198-387 39-207 (229)
38 PTZ00112 origin recognition co 98.7 4.9E-07 1.1E-11 106.4 17.9 214 170-388 754-987 (1164)
39 COG4886 Leucine-rich repeat (L 98.7 1.4E-08 3E-13 118.6 4.3 107 587-697 112-219 (394)
40 KOG0532 Leucine-rich repeat (L 98.7 1.3E-09 2.8E-14 120.1 -4.1 174 587-833 94-271 (722)
41 KOG0532 Leucine-rich repeat (L 98.6 2.2E-09 4.7E-14 118.3 -3.4 140 543-695 80-219 (722)
42 PRK13342 recombination factor 98.6 4.3E-07 9.3E-12 105.3 15.1 177 172-385 13-198 (413)
43 TIGR03420 DnaA_homol_Hda DnaA 98.6 7.4E-07 1.6E-11 95.0 15.4 172 176-387 22-205 (226)
44 COG3903 Predicted ATPase [Gene 98.6 1.6E-07 3.4E-12 101.6 9.6 299 197-519 13-317 (414)
45 PF14580 LRR_9: Leucine-rich r 98.6 2.3E-08 4.9E-13 98.6 2.8 107 589-697 40-150 (175)
46 PF14580 LRR_9: Leucine-rich r 98.6 2.2E-08 4.7E-13 98.7 2.0 108 588-699 16-125 (175)
47 PF13401 AAA_22: AAA domain; P 98.5 3E-07 6.6E-12 88.4 8.5 117 198-316 4-125 (131)
48 PF05496 RuvB_N: Holliday junc 98.5 7.7E-07 1.7E-11 89.3 10.9 181 171-387 24-225 (233)
49 PRK15386 type III secretion pr 98.5 5.6E-07 1.2E-11 99.4 10.6 53 926-980 51-104 (426)
50 PLN03150 hypothetical protein; 98.4 1.8E-07 3.9E-12 114.0 5.9 103 592-696 419-524 (623)
51 KOG1259 Nischarin, modulator o 98.4 3.1E-08 6.8E-13 100.3 -0.6 102 590-697 283-384 (490)
52 KOG3207 Beta-tubulin folding c 98.4 2.9E-08 6.3E-13 106.5 -0.9 189 606-834 113-313 (505)
53 cd00009 AAA The AAA+ (ATPases 98.4 1.6E-06 3.4E-11 85.7 11.7 124 174-317 1-130 (151)
54 PRK05564 DNA polymerase III su 98.4 5.9E-06 1.3E-10 92.3 17.3 179 171-382 4-189 (313)
55 KOG4341 F-box protein containi 98.4 4.2E-09 9.1E-14 112.1 -7.4 164 970-1133 242-420 (483)
56 COG1474 CDC6 Cdc6-related prot 98.4 1.5E-05 3.3E-10 89.3 20.1 207 172-387 18-242 (366)
57 COG4886 Leucine-rich repeat (L 98.4 1.4E-07 3E-12 110.1 3.5 198 594-839 96-294 (394)
58 PF13191 AAA_16: AAA ATPase do 98.4 5.5E-07 1.2E-11 92.7 7.5 47 172-221 1-47 (185)
59 PRK07003 DNA polymerase III su 98.4 5.6E-06 1.2E-10 97.6 16.4 179 171-382 16-220 (830)
60 PRK14963 DNA polymerase III su 98.4 1.4E-06 3E-11 102.0 11.5 197 171-380 14-214 (504)
61 PRK14961 DNA polymerase III su 98.4 1.2E-05 2.5E-10 91.6 18.8 194 171-380 16-217 (363)
62 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3E-11 82.9 9.3 120 198-339 2-127 (128)
63 PRK12402 replication factor C 98.4 8.5E-06 1.8E-10 93.0 17.3 197 171-381 15-224 (337)
64 KOG3207 Beta-tubulin folding c 98.4 9.6E-08 2.1E-12 102.6 1.2 116 733-859 141-260 (505)
65 KOG2028 ATPase related to the 98.4 4.7E-06 1E-10 87.4 13.2 129 197-347 161-294 (554)
66 PF13855 LRR_8: Leucine rich r 98.4 4.8E-07 1E-11 73.0 4.8 58 591-648 1-60 (61)
67 TIGR02903 spore_lon_C ATP-depe 98.4 6.2E-06 1.3E-10 99.6 16.0 203 171-386 154-398 (615)
68 PRK14960 DNA polymerase III su 98.3 1.3E-05 2.7E-10 93.8 17.4 178 171-381 15-217 (702)
69 KOG1259 Nischarin, modulator o 98.3 1E-07 2.2E-12 96.7 0.1 131 558-698 280-410 (490)
70 COG3899 Predicted ATPase [Gene 98.3 1.5E-05 3.2E-10 99.8 19.1 310 172-514 1-384 (849)
71 PRK14949 DNA polymerase III su 98.3 1.3E-05 2.7E-10 96.8 17.4 183 171-383 16-221 (944)
72 PRK08727 hypothetical protein; 98.3 2E-05 4.4E-10 83.4 17.2 148 199-380 42-201 (233)
73 PRK12323 DNA polymerase III su 98.3 1.5E-05 3.3E-10 92.8 17.2 180 171-383 16-225 (700)
74 PRK15386 type III secretion pr 98.3 1.3E-06 2.8E-11 96.7 7.9 136 969-1124 51-187 (426)
75 PRK14957 DNA polymerase III su 98.3 1.8E-05 3.9E-10 92.7 17.4 185 171-385 16-223 (546)
76 PRK06645 DNA polymerase III su 98.3 2.4E-05 5.1E-10 91.2 18.0 196 171-380 21-226 (507)
77 PLN03025 replication factor C 98.3 1.6E-05 3.6E-10 88.9 16.1 182 171-380 13-197 (319)
78 PLN03150 hypothetical protein; 98.3 9.2E-07 2E-11 107.8 6.5 104 564-672 420-526 (623)
79 PRK13341 recombination factor 98.3 6.2E-06 1.3E-10 100.3 13.2 174 171-377 28-211 (725)
80 cd01128 rho_factor Transcripti 98.3 1.8E-06 3.9E-11 91.1 7.4 89 197-286 15-112 (249)
81 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.4E-11 70.8 4.2 59 614-672 1-60 (61)
82 PRK14956 DNA polymerase III su 98.2 1.2E-05 2.7E-10 91.3 13.6 193 171-378 18-217 (484)
83 PRK00440 rfc replication facto 98.2 3.5E-05 7.6E-10 87.2 17.6 181 171-381 17-201 (319)
84 PRK08084 DNA replication initi 98.2 4.2E-05 9.1E-10 81.2 16.8 156 198-387 45-213 (235)
85 PRK04195 replication factor C 98.2 7.5E-05 1.6E-09 88.5 20.3 186 171-387 14-206 (482)
86 KOG2227 Pre-initiation complex 98.2 2.9E-05 6.4E-10 85.0 15.1 216 169-388 148-377 (529)
87 PRK08903 DnaA regulatory inact 98.2 3.7E-05 8E-10 81.7 15.8 152 198-387 42-203 (227)
88 PRK09376 rho transcription ter 98.2 4.1E-06 8.9E-11 91.6 8.4 89 197-286 168-265 (416)
89 PRK08691 DNA polymerase III su 98.2 4.5E-05 9.7E-10 90.3 17.4 196 171-381 16-218 (709)
90 KOG1909 Ran GTPase-activating 98.1 4.2E-07 9E-12 95.2 -0.3 239 585-857 24-310 (382)
91 PRK14962 DNA polymerase III su 98.1 5.4E-05 1.2E-09 88.0 16.9 187 171-387 14-223 (472)
92 KOG2120 SCF ubiquitin ligase, 98.1 6.5E-08 1.4E-12 98.3 -6.2 91 734-835 256-351 (419)
93 PTZ00202 tuzin; Provisional 98.1 3.1E-05 6.6E-10 85.0 13.5 164 169-346 260-433 (550)
94 TIGR02397 dnaX_nterm DNA polym 98.1 0.0001 2.2E-09 84.7 19.1 183 171-384 14-219 (355)
95 PRK09087 hypothetical protein; 98.1 3.4E-05 7.4E-10 80.8 13.5 146 198-387 44-199 (226)
96 PRK05642 DNA replication initi 98.1 7.8E-05 1.7E-09 79.0 16.1 156 198-387 45-212 (234)
97 PRK07994 DNA polymerase III su 98.1 8.1E-05 1.7E-09 88.7 17.6 193 171-382 16-219 (647)
98 PRK07940 DNA polymerase III su 98.1 0.0001 2.2E-09 83.7 17.7 181 171-383 5-213 (394)
99 TIGR00678 holB DNA polymerase 98.1 0.0001 2.2E-09 75.6 16.4 90 276-378 95-186 (188)
100 PRK07471 DNA polymerase III su 98.1 0.00012 2.6E-09 82.4 17.9 196 171-384 19-239 (365)
101 PRK14958 DNA polymerase III su 98.1 8.3E-05 1.8E-09 87.5 17.4 181 171-380 16-217 (509)
102 PRK09112 DNA polymerase III su 98.1 7.3E-05 1.6E-09 83.5 16.1 197 170-384 22-241 (351)
103 PF05621 TniB: Bacterial TniB 98.1 9.9E-05 2.1E-09 78.2 15.9 193 178-380 44-258 (302)
104 PRK14964 DNA polymerase III su 98.1 0.00011 2.3E-09 85.0 17.6 181 171-380 13-214 (491)
105 TIGR01242 26Sp45 26S proteasom 98.1 3.1E-05 6.6E-10 88.6 13.2 180 170-377 121-328 (364)
106 PRK05896 DNA polymerase III su 98.1 0.00011 2.4E-09 86.2 17.5 196 171-385 16-223 (605)
107 PRK14969 DNA polymerase III su 98.1 0.00013 2.8E-09 86.6 18.2 180 171-383 16-221 (527)
108 PF00308 Bac_DnaA: Bacterial d 98.1 0.00011 2.4E-09 76.7 15.8 164 197-385 33-210 (219)
109 PRK14951 DNA polymerase III su 98.0 0.00011 2.4E-09 87.4 17.4 195 171-381 16-223 (618)
110 PRK14087 dnaA chromosomal repl 98.0 0.00015 3.3E-09 84.3 17.2 168 198-386 141-322 (450)
111 PF12799 LRR_4: Leucine Rich r 98.0 7.4E-06 1.6E-10 60.1 3.7 38 592-629 2-39 (44)
112 KOG0531 Protein phosphatase 1, 98.0 1.1E-06 2.5E-11 102.4 -1.4 106 587-697 91-196 (414)
113 PRK14959 DNA polymerase III su 97.9 0.00021 4.6E-09 84.3 17.2 187 171-387 16-225 (624)
114 PRK14955 DNA polymerase III su 97.9 0.0001 2.2E-09 85.0 14.3 193 171-380 16-225 (397)
115 PRK09111 DNA polymerase III su 97.9 0.00023 5.1E-09 85.0 17.2 197 171-383 24-233 (598)
116 TIGR00767 rho transcription te 97.9 4.7E-05 1E-09 84.1 9.8 89 197-286 167-264 (415)
117 PRK11331 5-methylcytosine-spec 97.9 4.1E-05 8.9E-10 86.0 9.3 109 171-291 175-286 (459)
118 PRK14950 DNA polymerase III su 97.9 0.00044 9.5E-09 83.8 18.9 196 171-384 16-222 (585)
119 PRK08451 DNA polymerase III su 97.9 0.00056 1.2E-08 79.9 18.8 179 171-383 14-218 (535)
120 PRK14954 DNA polymerase III su 97.9 0.00023 5.1E-09 85.1 16.0 200 171-382 16-228 (620)
121 PRK07133 DNA polymerase III su 97.9 0.00044 9.6E-09 83.0 18.2 192 171-384 18-221 (725)
122 PRK14970 DNA polymerase III su 97.9 0.00047 1E-08 79.2 18.1 179 171-378 17-204 (367)
123 PHA02544 44 clamp loader, smal 97.9 0.00011 2.5E-09 82.6 12.6 148 171-345 21-171 (316)
124 KOG2982 Uncharacterized conser 97.9 5.7E-06 1.2E-10 84.5 1.7 86 588-673 68-158 (418)
125 PRK14952 DNA polymerase III su 97.8 0.00058 1.3E-08 81.2 18.5 197 171-386 13-223 (584)
126 CHL00181 cbbX CbbX; Provisiona 97.8 0.00071 1.5E-08 73.8 17.7 163 172-350 24-212 (287)
127 KOG0531 Protein phosphatase 1, 97.8 4.1E-06 8.9E-11 97.7 0.2 102 590-697 71-172 (414)
128 PRK14971 DNA polymerase III su 97.8 0.00062 1.3E-08 82.1 18.4 176 171-380 17-219 (614)
129 PRK06305 DNA polymerase III su 97.8 0.00081 1.8E-08 78.3 18.8 182 171-383 17-223 (451)
130 COG2255 RuvB Holliday junction 97.8 0.00013 2.9E-09 74.8 10.4 176 171-382 26-222 (332)
131 KOG0989 Replication factor C, 97.8 0.00028 6E-09 73.4 12.9 183 171-377 36-224 (346)
132 TIGR02881 spore_V_K stage V sp 97.8 0.00048 1E-08 74.7 15.6 160 172-349 7-193 (261)
133 KOG1859 Leucine-rich repeat pr 97.8 8.1E-07 1.8E-11 101.1 -6.0 110 584-698 180-290 (1096)
134 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00028 6E-09 88.6 15.3 154 171-347 187-363 (852)
135 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6.1E-10 57.0 3.8 35 614-648 1-35 (44)
136 KOG1909 Ran GTPase-activating 97.8 6.8E-06 1.5E-10 86.4 0.8 242 609-878 25-310 (382)
137 PRK07764 DNA polymerase III su 97.8 0.00064 1.4E-08 84.2 17.9 179 171-380 15-218 (824)
138 PRK06620 hypothetical protein; 97.8 0.00089 1.9E-08 69.6 16.3 136 199-382 45-188 (214)
139 TIGR00362 DnaA chromosomal rep 97.8 0.00091 2E-08 77.8 18.4 159 198-381 136-308 (405)
140 PRK14953 DNA polymerase III su 97.8 0.0012 2.5E-08 77.5 19.0 183 171-383 16-220 (486)
141 PRK03992 proteasome-activating 97.8 0.00021 4.6E-09 81.9 12.7 160 171-350 131-318 (389)
142 TIGR02639 ClpA ATP-dependent C 97.7 0.00032 6.8E-09 87.6 14.9 156 171-347 182-358 (731)
143 TIGR02880 cbbX_cfxQ probable R 97.7 0.001 2.2E-08 72.7 16.8 162 172-349 23-210 (284)
144 KOG2543 Origin recognition com 97.7 0.0011 2.3E-08 71.3 15.6 166 170-345 5-191 (438)
145 PRK14948 DNA polymerase III su 97.7 0.0013 2.8E-08 79.4 18.7 196 171-383 16-222 (620)
146 PRK12422 chromosomal replicati 97.7 0.0019 4.1E-08 74.9 18.9 154 198-376 141-306 (445)
147 KOG1859 Leucine-rich repeat pr 97.7 2.7E-06 5.8E-11 97.0 -4.5 108 558-673 183-291 (1096)
148 KOG2120 SCF ubiquitin ligase, 97.6 2.4E-06 5.2E-11 87.2 -4.6 84 591-674 185-273 (419)
149 PRK06647 DNA polymerase III su 97.6 0.0017 3.7E-08 77.4 18.3 197 171-382 16-219 (563)
150 PRK00149 dnaA chromosomal repl 97.6 0.0016 3.5E-08 76.7 17.9 159 198-381 148-320 (450)
151 PRK14965 DNA polymerase III su 97.6 0.0011 2.4E-08 79.8 15.9 194 171-383 16-221 (576)
152 PRK05563 DNA polymerase III su 97.6 0.0025 5.4E-08 76.5 18.6 191 171-380 16-217 (559)
153 CHL00095 clpC Clp protease ATP 97.6 0.00057 1.2E-08 86.4 14.0 157 171-346 179-353 (821)
154 PRK14088 dnaA chromosomal repl 97.6 0.0024 5.2E-08 74.4 18.0 159 198-380 130-302 (440)
155 PRK14086 dnaA chromosomal repl 97.6 0.0021 4.6E-08 75.8 17.3 157 199-380 315-485 (617)
156 PRK07399 DNA polymerase III su 97.6 0.0028 6.1E-08 70.0 17.2 196 171-383 4-221 (314)
157 PF00004 AAA: ATPase family as 97.5 0.00037 7.9E-09 66.9 9.1 96 201-316 1-111 (132)
158 PRK11034 clpA ATP-dependent Cl 97.5 0.0009 2E-08 82.3 13.6 156 171-347 186-362 (758)
159 PF05673 DUF815: Protein of un 97.5 0.0031 6.7E-08 64.8 14.7 121 169-316 25-149 (249)
160 PTZ00361 26 proteosome regulat 97.5 0.00049 1.1E-08 78.8 10.0 159 171-349 183-369 (438)
161 smart00382 AAA ATPases associa 97.4 0.00083 1.8E-08 65.5 10.5 88 199-290 3-91 (148)
162 PRK05707 DNA polymerase III su 97.4 0.0033 7.2E-08 69.8 16.2 97 276-383 105-203 (328)
163 PF14516 AAA_35: AAA-like doma 97.4 0.0051 1.1E-07 68.9 17.8 200 171-390 11-246 (331)
164 PRK08116 hypothetical protein; 97.4 0.00057 1.2E-08 73.7 9.7 103 199-316 115-220 (268)
165 TIGR00763 lon ATP-dependent pr 97.4 0.0098 2.1E-07 75.0 21.8 166 170-347 319-505 (775)
166 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.3E-09 89.3 3.8 130 538-673 122-262 (699)
167 COG0593 DnaA ATPase involved i 97.4 0.0022 4.8E-08 71.7 13.6 138 197-351 112-261 (408)
168 COG0542 clpA ATP-binding subun 97.3 0.0064 1.4E-07 73.2 17.8 122 171-304 491-620 (786)
169 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0023 5E-08 81.3 15.0 156 171-347 173-349 (852)
170 TIGR00602 rad24 checkpoint pro 97.3 0.0017 3.8E-08 77.6 12.9 50 171-221 84-133 (637)
171 KOG4579 Leucine-rich repeat (L 97.3 3.7E-05 8.1E-10 69.5 -0.8 85 587-672 49-134 (177)
172 TIGR03689 pup_AAA proteasome A 97.3 0.0022 4.8E-08 74.6 12.7 166 171-348 182-379 (512)
173 PTZ00454 26S protease regulato 97.3 0.0028 6E-08 72.3 13.2 159 171-349 145-331 (398)
174 KOG1514 Origin recognition com 97.3 0.0073 1.6E-07 70.2 16.1 211 170-387 395-625 (767)
175 PRK10536 hypothetical protein; 97.2 0.0028 6.1E-08 66.0 11.6 135 171-317 55-213 (262)
176 PRK10865 protein disaggregatio 97.2 0.0031 6.7E-08 79.7 14.4 44 171-220 178-221 (857)
177 COG1373 Predicted ATPase (AAA+ 97.2 0.0048 1E-07 70.8 14.7 119 200-343 39-163 (398)
178 KOG2004 Mitochondrial ATP-depe 97.2 0.007 1.5E-07 70.2 15.2 106 170-288 410-516 (906)
179 PRK08181 transposase; Validate 97.2 0.0019 4.1E-08 69.2 10.2 100 200-317 108-209 (269)
180 KOG4579 Leucine-rich repeat (L 97.2 8.3E-05 1.8E-09 67.3 -0.1 81 576-657 62-142 (177)
181 PRK10787 DNA-binding ATP-depen 97.2 0.0084 1.8E-07 74.6 17.3 166 170-347 321-506 (784)
182 PF04665 Pox_A32: Poxvirus A32 97.2 0.0006 1.3E-08 70.7 6.2 36 199-236 14-49 (241)
183 COG5238 RNA1 Ran GTPase-activa 97.2 0.00018 3.9E-09 72.8 2.0 87 588-674 27-133 (388)
184 KOG3665 ZYG-1-like serine/thre 97.1 0.00014 3.1E-09 88.3 1.0 132 561-696 121-259 (699)
185 PRK07952 DNA replication prote 97.1 0.0029 6.2E-08 66.7 10.4 103 198-316 99-204 (244)
186 PRK08769 DNA polymerase III su 97.1 0.019 4.2E-07 63.1 17.2 187 178-384 11-209 (319)
187 PRK12377 putative replication 97.1 0.0012 2.6E-08 69.7 7.6 102 198-316 101-205 (248)
188 PRK08058 DNA polymerase III su 97.1 0.014 3E-07 65.5 16.1 166 172-345 6-180 (329)
189 TIGR02640 gas_vesic_GvpN gas v 97.1 0.01 2.2E-07 64.3 14.5 122 177-316 8-160 (262)
190 COG3267 ExeA Type II secretory 97.1 0.03 6.5E-07 57.5 16.4 181 198-386 51-248 (269)
191 CHL00176 ftsH cell division pr 97.0 0.006 1.3E-07 73.8 13.7 177 171-375 183-386 (638)
192 KOG2982 Uncharacterized conser 97.0 0.00014 3.1E-09 74.6 -0.2 102 592-697 46-156 (418)
193 TIGR02639 ClpA ATP-dependent C 97.0 0.006 1.3E-07 76.3 14.0 122 170-303 453-579 (731)
194 TIGR01241 FtsH_fam ATP-depende 97.0 0.016 3.6E-07 69.2 17.1 179 171-377 55-260 (495)
195 PF13177 DNA_pol3_delta2: DNA 97.0 0.0097 2.1E-07 58.9 12.6 136 175-334 1-161 (162)
196 PRK08939 primosomal protein Dn 97.0 0.0039 8.4E-08 68.5 10.6 122 175-316 135-260 (306)
197 KOG0991 Replication factor C, 97.0 0.012 2.6E-07 58.7 12.6 44 171-220 27-70 (333)
198 PRK08118 topology modulation p 97.0 0.00035 7.5E-09 69.6 2.1 34 200-233 3-37 (167)
199 PRK06526 transposase; Provisio 97.0 0.0018 3.9E-08 69.1 7.5 100 199-317 99-201 (254)
200 PRK06090 DNA polymerase III su 97.0 0.027 5.8E-07 61.9 16.7 177 178-383 10-201 (319)
201 PRK09183 transposase/IS protei 97.0 0.0031 6.8E-08 67.8 9.3 100 199-316 103-205 (259)
202 PRK13531 regulatory ATPase Rav 97.0 0.0031 6.7E-08 71.9 9.6 151 172-346 21-193 (498)
203 PRK06871 DNA polymerase III su 96.9 0.041 8.8E-07 60.7 17.5 176 179-380 10-200 (325)
204 PHA00729 NTP-binding motif con 96.9 0.0061 1.3E-07 62.6 10.3 23 198-220 17-39 (226)
205 PF01695 IstB_IS21: IstB-like 96.9 0.0011 2.4E-08 66.6 4.8 99 199-316 48-149 (178)
206 KOG0741 AAA+-type ATPase [Post 96.9 0.015 3.2E-07 65.1 13.2 161 195-387 535-716 (744)
207 COG0466 Lon ATP-dependent Lon 96.8 0.0099 2.2E-07 69.5 12.4 164 170-347 322-508 (782)
208 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0033 7.2E-08 79.1 9.5 138 170-316 565-718 (852)
209 PRK10865 protein disaggregatio 96.8 0.011 2.5E-07 74.7 14.2 138 170-316 567-720 (857)
210 CHL00095 clpC Clp protease ATP 96.8 0.0037 7.9E-08 79.3 9.9 137 170-316 508-661 (821)
211 PRK06921 hypothetical protein; 96.8 0.0033 7.1E-08 67.8 8.1 99 198-316 117-224 (266)
212 KOG1644 U2-associated snRNP A' 96.8 0.0022 4.7E-08 62.7 5.9 82 970-1053 42-124 (233)
213 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0057 1.2E-07 77.7 11.2 137 171-316 565-717 (852)
214 PRK05541 adenylylsulfate kinas 96.8 0.0066 1.4E-07 61.5 9.6 37 197-235 6-42 (176)
215 COG1222 RPT1 ATP-dependent 26S 96.8 0.018 3.9E-07 61.7 12.8 188 172-388 152-372 (406)
216 PF02562 PhoH: PhoH-like prote 96.7 0.0047 1E-07 62.7 7.5 130 176-317 5-156 (205)
217 PRK12608 transcription termina 96.7 0.0086 1.9E-07 66.2 9.9 100 180-286 120-229 (380)
218 PRK07993 DNA polymerase III su 96.6 0.075 1.6E-06 59.3 17.3 178 178-381 9-202 (334)
219 KOG2228 Origin recognition com 96.6 0.02 4.3E-07 60.8 11.6 172 172-348 25-220 (408)
220 KOG1644 U2-associated snRNP A' 96.6 0.0016 3.6E-08 63.5 3.5 83 587-670 60-149 (233)
221 PRK07261 topology modulation p 96.6 0.0047 1E-07 61.9 6.9 65 200-287 2-67 (171)
222 TIGR01243 CDC48 AAA family ATP 96.6 0.011 2.5E-07 74.2 11.9 180 171-378 178-382 (733)
223 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0024 5.1E-08 70.2 4.8 50 172-221 52-101 (361)
224 PRK11889 flhF flagellar biosyn 96.6 0.023 4.9E-07 63.0 12.1 103 197-302 240-347 (436)
225 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.021 4.6E-07 55.4 10.6 116 199-317 3-138 (159)
226 PRK09361 radB DNA repair and r 96.5 0.01 2.3E-07 62.9 9.5 47 196-245 21-67 (225)
227 PF07728 AAA_5: AAA domain (dy 96.5 0.00086 1.9E-08 65.0 1.0 88 201-301 2-89 (139)
228 TIGR02237 recomb_radB DNA repa 96.5 0.01 2.2E-07 62.1 8.8 48 196-246 10-57 (209)
229 COG1875 NYN ribonuclease and A 96.4 0.011 2.4E-07 63.3 8.6 131 175-316 228-387 (436)
230 COG0470 HolB ATPase involved i 96.4 0.017 3.8E-07 65.4 10.9 143 172-334 2-168 (325)
231 PRK04296 thymidine kinase; Pro 96.4 0.0091 2E-07 61.0 7.7 114 199-319 3-118 (190)
232 PRK11034 clpA ATP-dependent Cl 96.4 0.01 2.3E-07 73.2 9.4 121 171-303 458-583 (758)
233 PF00448 SRP54: SRP54-type pro 96.4 0.015 3.3E-07 59.4 9.0 87 198-287 1-93 (196)
234 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.013 2.7E-07 62.8 9.0 50 196-245 17-70 (235)
235 KOG2035 Replication factor C, 96.4 0.019 4.1E-07 59.0 9.4 197 173-382 15-228 (351)
236 COG1223 Predicted ATPase (AAA+ 96.4 0.059 1.3E-06 54.9 12.6 158 171-349 121-299 (368)
237 PRK06835 DNA replication prote 96.3 0.0069 1.5E-07 67.1 6.7 102 199-316 184-288 (329)
238 CHL00195 ycf46 Ycf46; Provisio 96.3 0.031 6.7E-07 65.4 12.4 159 171-349 228-407 (489)
239 PF00910 RNA_helicase: RNA hel 96.3 0.008 1.7E-07 54.8 6.0 21 201-221 1-21 (107)
240 cd01393 recA_like RecA is a b 96.3 0.022 4.8E-07 60.5 10.4 88 196-286 17-123 (226)
241 cd01133 F1-ATPase_beta F1 ATP 96.3 0.013 2.9E-07 62.2 8.2 88 197-286 68-172 (274)
242 PF14532 Sigma54_activ_2: Sigm 96.3 0.0045 9.7E-08 59.7 4.4 107 174-316 1-109 (138)
243 PF07693 KAP_NTPase: KAP famil 96.3 0.2 4.4E-06 56.6 18.7 42 177-221 2-43 (325)
244 COG1484 DnaC DNA replication p 96.3 0.0071 1.5E-07 64.6 6.2 80 198-294 105-184 (254)
245 PF00158 Sigma54_activat: Sigm 96.3 0.018 3.8E-07 57.3 8.5 130 173-316 1-143 (168)
246 PRK06964 DNA polymerase III su 96.2 0.087 1.9E-06 58.6 14.7 94 276-384 131-226 (342)
247 COG2812 DnaX DNA polymerase II 96.2 0.016 3.5E-07 67.1 9.2 190 171-377 16-214 (515)
248 TIGR02902 spore_lonB ATP-depen 96.2 0.027 5.8E-07 67.4 11.5 43 172-220 66-108 (531)
249 TIGR01243 CDC48 AAA family ATP 96.2 0.051 1.1E-06 68.4 14.5 158 171-348 453-636 (733)
250 PRK04132 replication factor C 96.2 0.096 2.1E-06 64.9 16.2 153 206-381 574-729 (846)
251 cd01120 RecA-like_NTPases RecA 96.1 0.024 5.2E-07 56.6 9.2 40 200-241 1-40 (165)
252 cd01394 radB RadB. The archaea 96.1 0.025 5.4E-07 59.6 9.6 44 196-241 17-60 (218)
253 PF13207 AAA_17: AAA domain; P 96.1 0.004 8.7E-08 58.6 3.1 21 200-220 1-21 (121)
254 COG0542 clpA ATP-binding subun 96.1 0.033 7.1E-07 67.4 11.2 155 171-347 170-346 (786)
255 cd01131 PilT Pilus retraction 96.1 0.015 3.2E-07 60.0 7.4 112 199-321 2-113 (198)
256 PRK05800 cobU adenosylcobinami 96.1 0.0099 2.1E-07 59.2 5.8 152 200-380 3-169 (170)
257 PRK12724 flagellar biosynthesi 96.1 0.028 6.1E-07 63.3 9.7 24 197-220 222-245 (432)
258 cd00544 CobU Adenosylcobinamid 96.0 0.011 2.4E-07 58.6 5.8 147 201-378 2-167 (169)
259 PLN00020 ribulose bisphosphate 96.0 0.17 3.6E-06 55.6 14.8 26 196-221 146-171 (413)
260 KOG1051 Chaperone HSP104 and r 96.0 0.036 7.8E-07 68.0 10.9 123 171-304 562-687 (898)
261 PF13604 AAA_30: AAA domain; P 95.9 0.0091 2E-07 61.3 4.9 107 198-316 18-130 (196)
262 cd00983 recA RecA is a bacter 95.9 0.015 3.3E-07 63.7 6.7 84 196-286 53-142 (325)
263 COG2607 Predicted ATPase (AAA+ 95.9 0.039 8.4E-07 55.8 8.8 118 170-317 59-183 (287)
264 TIGR02012 tigrfam_recA protein 95.9 0.016 3.5E-07 63.4 6.9 84 196-286 53-142 (321)
265 PF10443 RNA12: RNA12 protein; 95.9 0.24 5.3E-06 55.5 15.9 215 176-402 1-298 (431)
266 KOG1947 Leucine rich repeat pr 95.9 0.00053 1.1E-08 82.9 -5.2 202 926-1129 187-416 (482)
267 PRK08233 hypothetical protein; 95.9 0.023 5E-07 58.0 7.7 23 198-220 3-25 (182)
268 KOG2123 Uncharacterized conser 95.9 0.00075 1.6E-08 68.8 -3.2 84 588-674 16-101 (388)
269 TIGR03499 FlhF flagellar biosy 95.8 0.031 6.6E-07 61.1 8.7 87 197-286 193-281 (282)
270 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.8 0.09 2E-06 51.0 11.1 106 198-322 26-132 (144)
271 PRK13695 putative NTPase; Prov 95.8 0.011 2.4E-07 59.6 5.0 22 200-221 2-23 (174)
272 KOG0733 Nuclear AAA ATPase (VC 95.8 0.15 3.3E-06 58.6 13.9 194 171-388 190-411 (802)
273 PF00560 LRR_1: Leucine Rich R 95.8 0.0044 9.6E-08 37.6 1.2 19 616-634 2-20 (22)
274 cd03214 ABC_Iron-Siderophores_ 95.8 0.1 2.2E-06 53.0 11.7 121 198-321 25-162 (180)
275 KOG0744 AAA+-type ATPase [Post 95.7 0.13 2.8E-06 54.3 12.2 78 199-286 178-259 (423)
276 TIGR02238 recomb_DMC1 meiotic 95.7 0.044 9.5E-07 60.5 9.5 58 196-254 94-155 (313)
277 PRK09354 recA recombinase A; P 95.7 0.023 4.9E-07 62.8 7.2 84 196-286 58-147 (349)
278 KOG0730 AAA+-type ATPase [Post 95.7 0.06 1.3E-06 62.6 10.7 161 171-351 434-619 (693)
279 PRK05703 flhF flagellar biosyn 95.7 0.082 1.8E-06 61.1 12.1 87 198-287 221-309 (424)
280 PRK08699 DNA polymerase III su 95.7 0.11 2.3E-06 57.9 12.3 71 276-346 112-184 (325)
281 PRK06696 uridine kinase; Valid 95.7 0.012 2.7E-07 62.0 4.8 42 176-220 3-44 (223)
282 PRK14722 flhF flagellar biosyn 95.7 0.034 7.3E-07 62.3 8.4 88 198-288 137-226 (374)
283 PF13671 AAA_33: AAA domain; P 95.7 0.029 6.3E-07 54.6 7.1 21 200-220 1-21 (143)
284 cd03228 ABCC_MRP_Like The MRP 95.7 0.089 1.9E-06 52.9 10.8 125 198-331 28-167 (171)
285 PRK12727 flagellar biosynthesi 95.7 0.049 1.1E-06 63.0 9.7 88 197-287 349-438 (559)
286 PRK15455 PrkA family serine pr 95.7 0.0075 1.6E-07 69.7 3.2 49 172-220 77-125 (644)
287 cd03238 ABC_UvrA The excision 95.7 0.1 2.2E-06 52.4 10.9 122 198-331 21-161 (176)
288 PF08423 Rad51: Rad51; InterP 95.6 0.031 6.7E-07 60.0 7.7 56 197-253 37-96 (256)
289 COG1618 Predicted nucleotide k 95.6 0.011 2.3E-07 55.9 3.5 24 198-221 5-28 (179)
290 PF07724 AAA_2: AAA domain (Cd 95.6 0.012 2.5E-07 58.8 4.0 87 198-302 3-104 (171)
291 cd03247 ABCC_cytochrome_bd The 95.6 0.06 1.3E-06 54.6 9.3 126 198-331 28-169 (178)
292 KOG2739 Leucine-rich acidic nu 95.6 0.0048 1E-07 63.3 1.1 38 636-673 64-103 (260)
293 KOG2739 Leucine-rich acidic nu 95.6 0.0037 8E-08 64.1 0.3 106 589-697 41-153 (260)
294 cd03216 ABC_Carb_Monos_I This 95.6 0.06 1.3E-06 53.6 8.9 117 198-321 26-146 (163)
295 PRK12726 flagellar biosynthesi 95.6 0.11 2.4E-06 57.6 11.5 91 196-288 204-296 (407)
296 PF05659 RPW8: Arabidopsis bro 95.5 0.21 4.6E-06 47.9 12.0 83 2-88 3-86 (147)
297 PRK12723 flagellar biosynthesi 95.5 0.1 2.2E-06 59.1 11.6 104 197-303 173-282 (388)
298 PRK00771 signal recognition pa 95.5 0.13 2.9E-06 59.3 12.6 57 196-255 93-151 (437)
299 KOG1969 DNA replication checkp 95.5 0.05 1.1E-06 63.8 9.0 87 195-301 323-411 (877)
300 PHA02244 ATPase-like protein 95.5 0.081 1.8E-06 58.4 10.3 35 178-220 107-141 (383)
301 TIGR00959 ffh signal recogniti 95.5 0.074 1.6E-06 61.1 10.4 25 197-221 98-122 (428)
302 PRK14974 cell division protein 95.5 0.1 2.2E-06 58.0 11.1 89 197-288 139-233 (336)
303 PLN03187 meiotic recombination 95.5 0.081 1.8E-06 58.8 10.4 58 196-254 124-185 (344)
304 KOG0731 AAA+-type ATPase conta 95.4 0.26 5.6E-06 59.5 14.8 183 171-380 311-521 (774)
305 PRK10867 signal recognition pa 95.4 0.054 1.2E-06 62.2 8.9 24 197-220 99-122 (433)
306 PRK06762 hypothetical protein; 95.4 0.41 8.9E-06 47.8 14.4 23 198-220 2-24 (166)
307 TIGR00708 cobA cob(I)alamin ad 95.4 0.19 4.1E-06 49.5 11.3 118 198-317 5-140 (173)
308 TIGR02239 recomb_RAD51 DNA rep 95.3 0.084 1.8E-06 58.5 9.9 57 196-253 94-154 (316)
309 TIGR00064 ftsY signal recognit 95.3 0.062 1.3E-06 58.1 8.7 89 196-287 70-164 (272)
310 TIGR01069 mutS2 MutS2 family p 95.3 0.048 1.1E-06 67.9 8.9 173 198-389 322-507 (771)
311 cd03115 SRP The signal recogni 95.3 0.11 2.4E-06 52.4 10.1 21 200-220 2-22 (173)
312 cd03223 ABCD_peroxisomal_ALDP 95.3 0.2 4.4E-06 49.9 11.8 124 198-331 27-160 (166)
313 PF00560 LRR_1: Leucine Rich R 95.3 0.0082 1.8E-07 36.4 1.1 22 592-613 1-22 (22)
314 COG0714 MoxR-like ATPases [Gen 95.3 0.051 1.1E-06 61.3 8.2 114 172-303 25-138 (329)
315 PRK06067 flagellar accessory p 95.3 0.11 2.3E-06 55.5 10.3 86 196-286 23-129 (234)
316 PRK04301 radA DNA repair and r 95.2 0.078 1.7E-06 59.3 9.5 57 196-253 100-160 (317)
317 COG0468 RecA RecA/RadA recombi 95.2 0.077 1.7E-06 56.8 8.8 89 195-286 57-150 (279)
318 KOG2123 Uncharacterized conser 95.2 0.0024 5.1E-08 65.3 -2.4 82 585-667 35-123 (388)
319 cd03222 ABC_RNaseL_inhibitor T 95.2 0.17 3.7E-06 50.7 10.7 104 198-322 25-137 (177)
320 COG0572 Udk Uridine kinase [Nu 95.2 0.046 9.9E-07 55.5 6.6 78 196-278 6-85 (218)
321 COG0464 SpoVK ATPases of the A 95.1 0.23 4.9E-06 59.7 13.7 134 196-349 274-425 (494)
322 cd03246 ABCC_Protease_Secretio 95.1 0.12 2.6E-06 52.0 9.7 128 198-331 28-168 (173)
323 PRK11608 pspF phage shock prot 95.1 0.061 1.3E-06 60.3 8.1 132 172-316 7-150 (326)
324 PF00485 PRK: Phosphoribulokin 95.1 0.078 1.7E-06 54.6 8.4 21 200-220 1-21 (194)
325 PRK07667 uridine kinase; Provi 95.1 0.035 7.7E-07 56.9 5.8 37 180-220 3-39 (193)
326 cd03230 ABC_DR_subfamily_A Thi 95.1 0.12 2.6E-06 52.0 9.5 119 198-322 26-160 (173)
327 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.042 9.2E-07 57.2 6.3 23 198-220 29-51 (213)
328 PRK15429 formate hydrogenlyase 95.0 0.088 1.9E-06 65.9 10.1 133 171-316 376-520 (686)
329 PRK05439 pantothenate kinase; 95.0 0.12 2.6E-06 56.4 9.8 26 195-220 83-108 (311)
330 PLN03186 DNA repair protein RA 95.0 0.13 2.9E-06 57.3 10.3 58 196-254 121-182 (342)
331 PRK00889 adenylylsulfate kinas 95.0 0.16 3.5E-06 51.3 10.3 24 198-221 4-27 (175)
332 KOG0733 Nuclear AAA ATPase (VC 95.0 0.21 4.5E-06 57.5 11.6 156 198-377 545-718 (802)
333 KOG0734 AAA+-type ATPase conta 95.0 0.12 2.7E-06 58.2 9.7 50 172-221 305-360 (752)
334 TIGR01650 PD_CobS cobaltochela 95.0 0.3 6.6E-06 53.4 12.6 57 176-245 50-106 (327)
335 COG2884 FtsE Predicted ATPase 95.0 0.26 5.7E-06 48.3 10.6 55 268-323 146-203 (223)
336 KOG0473 Leucine-rich repeat pr 94.9 0.0015 3.3E-08 64.8 -4.4 85 587-672 38-122 (326)
337 TIGR01817 nifA Nif-specific re 94.9 0.14 3E-06 62.0 11.2 133 170-316 195-340 (534)
338 COG4608 AppF ABC-type oligopep 94.9 0.14 3.1E-06 53.6 9.4 125 198-325 39-178 (268)
339 cd01121 Sms Sms (bacterial rad 94.9 0.15 3.3E-06 57.7 10.5 82 197-286 81-167 (372)
340 PRK07132 DNA polymerase III su 94.8 1.6 3.4E-05 47.9 17.6 153 198-383 18-185 (299)
341 PRK10733 hflB ATP-dependent me 94.8 0.16 3.4E-06 62.5 11.2 158 172-349 153-337 (644)
342 COG2842 Uncharacterized ATPase 94.8 0.42 9.2E-06 50.6 12.5 134 198-351 94-227 (297)
343 cd01122 GP4d_helicase GP4d_hel 94.8 0.24 5.2E-06 54.3 11.6 52 198-252 30-81 (271)
344 TIGR02974 phageshock_pspF psp 94.7 0.073 1.6E-06 59.5 7.5 130 173-316 1-143 (329)
345 KOG1532 GTPase XAB1, interacts 94.7 0.11 2.3E-06 53.5 7.7 64 195-258 16-88 (366)
346 cd03229 ABC_Class3 This class 94.7 0.15 3.2E-06 51.7 9.1 23 198-220 26-48 (178)
347 cd03282 ABC_MSH4_euk MutS4 hom 94.7 0.084 1.8E-06 54.5 7.3 118 198-324 29-158 (204)
348 KOG1947 Leucine rich repeat pr 94.7 0.0023 5E-08 77.3 -5.0 181 946-1127 187-389 (482)
349 cd02025 PanK Pantothenate kina 94.7 0.096 2.1E-06 54.8 7.8 21 200-220 1-21 (220)
350 PTZ00301 uridine kinase; Provi 94.7 0.034 7.4E-07 57.4 4.3 23 198-220 3-25 (210)
351 TIGR00554 panK_bact pantothena 94.6 0.14 3.1E-06 55.5 9.1 25 196-220 60-84 (290)
352 TIGR02236 recomb_radA DNA repa 94.6 0.16 3.5E-06 56.7 9.8 56 197-253 94-153 (310)
353 PRK10463 hydrogenase nickel in 94.6 0.15 3.2E-06 54.8 8.9 85 197-287 103-194 (290)
354 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.36 7.9E-06 51.2 12.1 115 197-316 19-165 (229)
355 PF13238 AAA_18: AAA domain; P 94.5 0.026 5.6E-07 53.7 2.9 20 201-220 1-20 (129)
356 PRK05986 cob(I)alamin adenolsy 94.5 0.29 6.3E-06 49.0 10.2 118 198-317 22-158 (191)
357 PF07726 AAA_3: ATPase family 94.5 0.023 5E-07 52.1 2.3 28 201-230 2-29 (131)
358 PF00006 ATP-synt_ab: ATP synt 94.5 0.1 2.3E-06 53.8 7.3 83 198-286 15-114 (215)
359 COG1121 ZnuC ABC-type Mn/Zn tr 94.5 0.3 6.6E-06 51.2 10.6 123 198-322 30-204 (254)
360 PF00154 RecA: recA bacterial 94.5 0.087 1.9E-06 57.6 6.9 84 196-286 51-140 (322)
361 COG1066 Sms Predicted ATP-depe 94.4 0.17 3.7E-06 55.7 9.0 81 197-286 92-177 (456)
362 TIGR02858 spore_III_AA stage I 94.4 0.19 4.1E-06 54.1 9.4 127 180-321 98-233 (270)
363 COG1102 Cmk Cytidylate kinase 94.4 0.074 1.6E-06 50.4 5.4 44 200-256 2-45 (179)
364 PF12775 AAA_7: P-loop contain 94.4 0.046 1E-06 59.1 4.8 93 181-293 23-116 (272)
365 cd01125 repA Hexameric Replica 94.4 0.32 6.9E-06 52.0 11.2 21 200-220 3-23 (239)
366 PRK06002 fliI flagellum-specif 94.4 0.15 3.3E-06 58.3 9.0 86 198-286 165-263 (450)
367 PRK06547 hypothetical protein; 94.4 0.051 1.1E-06 54.2 4.7 25 197-221 14-38 (172)
368 PRK09270 nucleoside triphospha 94.4 0.18 4E-06 53.4 9.3 25 196-220 31-55 (229)
369 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.21 4.5E-06 53.3 9.6 50 196-249 19-68 (237)
370 PRK08533 flagellar accessory p 94.3 0.26 5.7E-06 52.0 10.2 48 198-249 24-71 (230)
371 PRK05022 anaerobic nitric oxid 94.3 0.16 3.5E-06 60.9 9.6 133 170-316 186-331 (509)
372 PF01583 APS_kinase: Adenylyls 94.3 0.049 1.1E-06 52.7 4.1 36 198-235 2-37 (156)
373 PRK13948 shikimate kinase; Pro 94.3 0.26 5.6E-06 49.6 9.5 24 197-220 9-32 (182)
374 cd02019 NK Nucleoside/nucleoti 94.3 0.03 6.6E-07 46.1 2.4 22 200-221 1-22 (69)
375 cd01135 V_A-ATPase_B V/A-type 94.3 0.18 3.9E-06 53.6 8.6 89 198-286 69-175 (276)
376 PRK05480 uridine/cytidine kina 94.2 0.039 8.5E-07 57.7 3.5 24 197-220 5-28 (209)
377 PRK13539 cytochrome c biogenes 94.2 0.36 7.8E-06 50.3 10.7 62 270-334 138-201 (207)
378 TIGR00382 clpX endopeptidase C 94.2 0.25 5.4E-06 56.4 10.1 51 170-220 76-138 (413)
379 PRK14721 flhF flagellar biosyn 94.2 0.2 4.4E-06 57.2 9.3 86 198-286 191-278 (420)
380 PRK14723 flhF flagellar biosyn 94.2 0.17 3.7E-06 61.8 9.2 87 198-287 185-273 (767)
381 cd02027 APSK Adenosine 5'-phos 94.2 0.29 6.3E-06 47.8 9.3 21 200-220 1-21 (149)
382 KOG0735 AAA+-type ATPase [Post 94.2 0.11 2.4E-06 60.7 7.1 72 198-287 431-504 (952)
383 KOG0728 26S proteasome regulat 94.1 0.84 1.8E-05 46.3 12.3 191 172-387 147-367 (404)
384 COG4618 ArpD ABC-type protease 94.1 0.14 3.1E-06 57.7 7.7 23 198-220 362-384 (580)
385 TIGR03574 selen_PSTK L-seryl-t 94.1 0.17 3.7E-06 54.5 8.3 21 200-220 1-21 (249)
386 COG0194 Gmk Guanylate kinase [ 94.1 0.2 4.4E-06 49.1 7.8 24 198-221 4-27 (191)
387 TIGR00235 udk uridine kinase. 94.1 0.042 9.2E-07 57.2 3.5 25 196-220 4-28 (207)
388 PTZ00035 Rad51 protein; Provis 94.1 0.39 8.4E-06 53.8 11.2 58 196-254 116-177 (337)
389 cd03215 ABC_Carb_Monos_II This 94.0 0.26 5.7E-06 50.0 9.2 23 198-220 26-48 (182)
390 COG0541 Ffh Signal recognition 94.0 1 2.2E-05 50.4 14.0 74 179-255 78-156 (451)
391 COG1136 SalX ABC-type antimicr 94.0 0.56 1.2E-05 48.4 11.3 62 268-331 151-215 (226)
392 PF08433 KTI12: Chromatin asso 94.0 0.13 2.9E-06 55.3 7.1 23 199-221 2-24 (270)
393 TIGR01420 pilT_fam pilus retra 94.0 0.15 3.3E-06 57.5 8.0 112 198-320 122-233 (343)
394 cd03217 ABC_FeS_Assembly ABC-t 93.9 0.34 7.5E-06 50.1 10.0 24 198-221 26-49 (200)
395 COG0563 Adk Adenylate kinase a 93.9 0.09 2E-06 52.7 5.3 22 200-221 2-23 (178)
396 cd01129 PulE-GspE PulE/GspE Th 93.9 0.25 5.4E-06 53.3 9.0 107 198-319 80-186 (264)
397 PTZ00088 adenylate kinase 1; P 93.9 0.057 1.2E-06 56.6 4.0 20 201-220 9-28 (229)
398 KOG0924 mRNA splicing factor A 93.8 0.45 9.8E-06 55.3 11.0 142 178-333 359-529 (1042)
399 PRK06995 flhF flagellar biosyn 93.8 0.2 4.3E-06 58.3 8.6 87 198-287 256-344 (484)
400 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.19 4.1E-06 54.2 8.0 40 197-238 35-74 (259)
401 PF03215 Rad17: Rad17 cell cyc 93.8 0.29 6.4E-06 57.8 10.1 58 173-235 21-78 (519)
402 cd03283 ABC_MutS-like MutS-lik 93.8 0.11 2.5E-06 53.3 5.9 22 199-220 26-47 (199)
403 cd02028 UMPK_like Uridine mono 93.7 0.091 2E-06 53.1 5.1 21 200-220 1-21 (179)
404 COG1419 FlhF Flagellar GTP-bin 93.7 0.2 4.4E-06 55.7 8.0 120 178-302 185-308 (407)
405 cd03369 ABCC_NFT1 Domain 2 of 93.7 0.88 1.9E-05 47.4 12.7 60 270-331 136-196 (207)
406 TIGR01425 SRP54_euk signal rec 93.7 0.2 4.4E-06 57.2 8.3 24 197-220 99-122 (429)
407 TIGR00390 hslU ATP-dependent p 93.7 0.15 3.2E-06 57.4 6.9 50 171-220 12-69 (441)
408 PRK08972 fliI flagellum-specif 93.7 0.22 4.7E-06 56.8 8.3 85 198-286 162-261 (444)
409 PF03308 ArgK: ArgK protein; 93.7 0.13 2.8E-06 53.6 5.9 66 179-248 14-79 (266)
410 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.27 5.8E-06 48.6 8.2 118 198-323 25-146 (157)
411 cd03240 ABC_Rad50 The catalyti 93.6 0.52 1.1E-05 48.8 10.6 60 270-331 132-195 (204)
412 cd03244 ABCC_MRP_domain2 Domai 93.6 0.71 1.5E-05 48.7 11.9 23 198-220 30-52 (221)
413 COG1126 GlnQ ABC-type polar am 93.6 1.1 2.4E-05 45.1 12.0 35 198-235 28-62 (240)
414 PF08298 AAA_PrkA: PrkA AAA do 93.6 0.076 1.7E-06 58.0 4.3 50 171-220 61-110 (358)
415 COG3640 CooC CO dehydrogenase 93.5 0.092 2E-06 53.2 4.5 43 200-244 2-45 (255)
416 PTZ00185 ATPase alpha subunit; 93.5 0.3 6.6E-06 56.0 9.1 87 198-286 189-298 (574)
417 PRK06731 flhF flagellar biosyn 93.5 0.51 1.1E-05 50.7 10.5 87 198-288 75-165 (270)
418 cd03213 ABCG_EPDR ABCG transpo 93.5 0.7 1.5E-05 47.5 11.2 23 198-220 35-57 (194)
419 cd02021 GntK Gluconate kinase 93.5 0.36 7.8E-06 47.2 8.8 21 200-220 1-21 (150)
420 COG1428 Deoxynucleoside kinase 93.4 0.054 1.2E-06 54.1 2.7 24 198-221 4-27 (216)
421 PRK00625 shikimate kinase; Pro 93.4 0.053 1.2E-06 54.1 2.7 21 200-220 2-22 (173)
422 PRK03839 putative kinase; Prov 93.4 0.054 1.2E-06 55.1 2.8 22 200-221 2-23 (180)
423 KOG0729 26S proteasome regulat 93.4 0.14 3E-06 52.2 5.5 54 173-228 179-239 (435)
424 PRK09519 recA DNA recombinatio 93.4 0.19 4E-06 61.7 7.7 84 196-286 58-147 (790)
425 PRK05973 replicative DNA helic 93.4 0.36 7.9E-06 50.6 8.9 49 197-249 63-111 (237)
426 PF03029 ATP_bind_1: Conserved 93.4 0.11 2.5E-06 54.9 5.3 19 203-221 1-19 (238)
427 cd03263 ABC_subfamily_A The AB 93.4 0.53 1.1E-05 49.7 10.4 24 198-221 28-51 (220)
428 TIGR00416 sms DNA repair prote 93.4 0.4 8.7E-06 56.1 10.2 53 180-238 80-132 (454)
429 PRK04040 adenylate kinase; Pro 93.4 0.067 1.5E-06 54.4 3.4 23 198-220 2-24 (188)
430 cd01134 V_A-ATPase_A V/A-type 93.3 0.51 1.1E-05 51.8 10.0 49 197-249 156-205 (369)
431 COG0396 sufC Cysteine desulfur 93.3 0.53 1.2E-05 47.8 9.4 62 268-329 153-216 (251)
432 COG4088 Predicted nucleotide k 93.3 0.061 1.3E-06 53.0 2.7 22 199-220 2-23 (261)
433 PRK10416 signal recognition pa 93.3 0.28 6E-06 54.4 8.3 25 197-221 113-137 (318)
434 KOG0739 AAA+-type ATPase [Post 93.3 1.9 4.1E-05 45.3 13.4 188 171-387 133-348 (439)
435 PRK11823 DNA repair protein Ra 93.3 0.36 7.7E-06 56.5 9.6 41 197-239 79-119 (446)
436 PRK09280 F0F1 ATP synthase sub 93.3 0.31 6.8E-06 56.0 8.8 89 197-286 143-247 (463)
437 TIGR00150 HI0065_YjeE ATPase, 93.2 0.11 2.5E-06 48.7 4.4 24 198-221 22-45 (133)
438 COG0003 ArsA Predicted ATPase 93.2 0.11 2.5E-06 57.0 5.1 49 198-248 2-50 (322)
439 PRK13765 ATP-dependent proteas 93.2 0.1 2.2E-06 63.0 5.2 74 171-254 31-104 (637)
440 TIGR03740 galliderm_ABC gallid 93.2 0.92 2E-05 47.9 11.9 23 198-220 26-48 (223)
441 PRK03846 adenylylsulfate kinas 93.2 0.22 4.8E-06 51.4 6.9 24 197-220 23-46 (198)
442 PRK08927 fliI flagellum-specif 93.2 0.32 7E-06 55.6 8.7 85 198-286 158-257 (442)
443 TIGR01360 aden_kin_iso1 adenyl 93.2 0.07 1.5E-06 54.8 3.2 24 197-220 2-25 (188)
444 PRK12597 F0F1 ATP synthase sub 93.1 0.24 5.3E-06 57.1 7.8 89 197-286 142-246 (461)
445 PLN02924 thymidylate kinase 93.1 0.28 6.1E-06 51.2 7.6 27 196-222 14-40 (220)
446 PF13481 AAA_25: AAA domain; P 93.0 0.44 9.5E-06 49.1 9.0 41 199-239 33-81 (193)
447 PRK04328 hypothetical protein; 93.0 0.37 7.9E-06 51.7 8.6 41 197-239 22-62 (249)
448 TIGR03522 GldA_ABC_ATP gliding 93.0 0.82 1.8E-05 50.8 11.7 24 198-221 28-51 (301)
449 PRK10820 DNA-binding transcrip 93.0 0.32 6.9E-06 58.4 9.0 132 171-316 204-348 (520)
450 cd03287 ABC_MSH3_euk MutS3 hom 93.0 0.13 2.9E-06 53.6 5.0 118 198-323 31-160 (222)
451 TIGR01313 therm_gnt_kin carboh 93.0 0.56 1.2E-05 46.7 9.4 20 201-220 1-20 (163)
452 PF03205 MobB: Molybdopterin g 93.0 0.14 2.9E-06 49.2 4.6 39 199-238 1-39 (140)
453 smart00534 MUTSac ATPase domai 92.9 0.14 3.1E-06 52.1 5.1 21 200-220 1-21 (185)
454 PRK12678 transcription termina 92.9 0.24 5.2E-06 57.5 7.2 88 197-286 415-512 (672)
455 cd03245 ABCC_bacteriocin_expor 92.9 0.84 1.8E-05 48.1 11.1 23 198-220 30-52 (220)
456 PRK05201 hslU ATP-dependent pr 92.9 0.22 4.8E-06 56.1 6.7 50 171-220 15-72 (443)
457 COG1703 ArgK Putative periplas 92.9 0.13 2.9E-06 54.1 4.7 65 181-249 38-102 (323)
458 PRK00279 adk adenylate kinase; 92.9 0.39 8.5E-06 50.3 8.4 21 200-220 2-22 (215)
459 PF12061 DUF3542: Protein of u 92.9 0.2 4.3E-06 52.5 5.8 75 14-88 298-373 (402)
460 PRK06793 fliI flagellum-specif 92.8 0.63 1.4E-05 53.3 10.4 123 197-323 155-292 (432)
461 PRK09544 znuC high-affinity zi 92.8 0.76 1.6E-05 49.4 10.7 24 198-221 30-53 (251)
462 COG2019 AdkA Archaeal adenylat 92.8 0.087 1.9E-06 50.2 2.9 23 198-220 4-26 (189)
463 PF13306 LRR_5: Leucine rich r 92.8 0.19 4.2E-06 47.6 5.6 101 558-669 8-111 (129)
464 COG1936 Predicted nucleotide k 92.8 0.078 1.7E-06 51.1 2.7 20 200-219 2-21 (180)
465 TIGR03498 FliI_clade3 flagella 92.8 0.39 8.4E-06 55.0 8.7 86 198-286 140-239 (418)
466 PRK08149 ATP synthase SpaL; Va 92.8 0.39 8.5E-06 54.9 8.7 85 198-286 151-250 (428)
467 cd03232 ABC_PDR_domain2 The pl 92.8 0.67 1.5E-05 47.6 9.8 23 198-220 33-55 (192)
468 TIGR03305 alt_F1F0_F1_bet alte 92.7 0.27 5.9E-06 56.4 7.4 89 197-286 137-241 (449)
469 cd01136 ATPase_flagellum-secre 92.7 0.44 9.5E-06 52.6 8.7 83 198-286 69-168 (326)
470 PRK05922 type III secretion sy 92.7 0.3 6.4E-06 55.9 7.6 85 198-286 157-256 (434)
471 cd02024 NRK1 Nicotinamide ribo 92.7 0.07 1.5E-06 53.8 2.3 21 200-220 1-21 (187)
472 PF13504 LRR_7: Leucine rich r 92.6 0.076 1.7E-06 29.8 1.4 14 616-629 3-16 (17)
473 cd03253 ABCC_ATM1_transporter 92.6 1.1 2.3E-05 47.9 11.6 60 270-331 148-208 (236)
474 cd03280 ABC_MutS2 MutS2 homolo 92.6 0.16 3.4E-06 52.6 5.0 21 199-219 29-49 (200)
475 PF03969 AFG1_ATPase: AFG1-lik 92.6 0.38 8.2E-06 54.2 8.2 105 197-320 61-170 (362)
476 COG2274 SunT ABC-type bacterio 92.6 35 0.00075 42.5 27.2 23 198-220 499-521 (709)
477 cd01132 F1_ATPase_alpha F1 ATP 92.5 0.33 7.2E-06 51.7 7.2 83 198-286 69-170 (274)
478 PF00625 Guanylate_kin: Guanyl 92.5 0.13 2.8E-06 52.4 4.1 36 198-235 2-37 (183)
479 PRK10751 molybdopterin-guanine 92.5 0.13 2.7E-06 51.0 3.8 25 197-221 5-29 (173)
480 PRK13543 cytochrome c biogenes 92.5 1.4 3E-05 46.2 12.0 24 198-221 37-60 (214)
481 cd03285 ABC_MSH2_euk MutS2 hom 92.5 0.16 3.5E-06 53.3 4.8 120 197-323 29-159 (222)
482 cd03250 ABCC_MRP_domain1 Domai 92.4 1.9 4.2E-05 44.7 12.9 24 198-221 31-54 (204)
483 cd02023 UMPK Uridine monophosp 92.4 0.077 1.7E-06 54.9 2.4 21 200-220 1-21 (198)
484 TIGR03575 selen_PSTK_euk L-ser 92.4 1.4 2.9E-05 49.1 12.1 21 201-221 2-22 (340)
485 PRK00409 recombination and DNA 92.4 0.12 2.7E-06 64.6 4.4 173 198-389 327-512 (782)
486 PRK00131 aroK shikimate kinase 92.4 0.098 2.1E-06 52.9 3.0 23 198-220 4-26 (175)
487 cd03243 ABC_MutS_homologs The 92.4 0.19 4.2E-06 52.0 5.3 22 199-220 30-51 (202)
488 PRK13947 shikimate kinase; Pro 92.4 0.09 1.9E-06 52.9 2.7 21 200-220 3-23 (171)
489 PF06414 Zeta_toxin: Zeta toxi 92.3 0.29 6.3E-06 50.5 6.5 103 195-303 12-117 (199)
490 TIGR01359 UMP_CMP_kin_fam UMP- 92.3 0.082 1.8E-06 53.9 2.4 21 200-220 1-21 (183)
491 PRK09099 type III secretion sy 92.3 0.45 9.8E-06 54.7 8.5 87 197-286 162-262 (441)
492 PF06309 Torsin: Torsin; Inte 92.3 0.18 4E-06 46.3 4.3 51 171-221 25-76 (127)
493 PF06745 KaiC: KaiC; InterPro 92.3 0.21 4.6E-06 52.9 5.6 50 197-249 18-67 (226)
494 TIGR03880 KaiC_arch_3 KaiC dom 92.3 0.87 1.9E-05 48.1 10.2 48 197-248 15-62 (224)
495 PRK15453 phosphoribulokinase; 92.2 0.59 1.3E-05 49.8 8.5 24 197-220 4-27 (290)
496 COG0467 RAD55 RecA-superfamily 92.2 0.15 3.3E-06 55.3 4.4 42 196-239 21-62 (260)
497 COG1120 FepC ABC-type cobalami 92.2 1 2.3E-05 47.5 10.3 23 198-220 28-50 (258)
498 COG1224 TIP49 DNA helicase TIP 92.2 0.29 6.3E-06 52.6 6.1 55 170-228 38-95 (450)
499 TIGR00041 DTMP_kinase thymidyl 92.2 0.43 9.2E-06 49.2 7.6 23 199-221 4-26 (195)
500 TIGR02322 phosphon_PhnN phosph 92.1 0.11 2.3E-06 52.9 2.9 23 199-221 2-24 (179)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-87 Score=814.48 Aligned_cols=759 Identities=27% Similarity=0.417 Sum_probs=567.7
Q ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000962 16 KAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEERQLKVPQLKDWLGKLRNAAYDAEDILETFATQVAMHK 95 (1208)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~~d~ed~ld~~~~~~~~~~ 95 (1208)
..++++.+++.+++..+.+.++.+..|+++|..++.++++|++++.....++.|...+++++|++||.++.|.......+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~ 86 (889)
T KOG4658|consen 7 FGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERK 86 (889)
T ss_pred EehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999999999999999999988776554
Q ss_pred hhhhcc-c--ccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCCCcccccccCCc
Q 000962 96 RKQKLR-R--VRTPISGNKISYQYDAAQRIKKILDRLDVITEEKEKFHLSSGVNNNSGNSRNHNQDQELPLTGSFIDTAN 172 (1208)
Q Consensus 96 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1208)
....+. + .+...| ...+++..+..+..+..++-.+.+..+.+....-....... ...+....+.+...+..
T Consensus 87 ~~~~l~~~~~~~~~~c--~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~----~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 87 ANDLLSTRSVERQRLC--LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES----LDPREKVETRPIQSESD 160 (889)
T ss_pred HhHHhhhhHHHHHHHh--hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc----ccchhhcccCCCCcccc
Confidence 332221 1 011111 11455667777777788888777777777643211111000 00111222333333444
Q ss_pred cccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHHHHH
Q 000962 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKGMIE 251 (1208)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1208)
||.+..++++.+.|.+++ ..+++|+||||+||||||++++|+.. ++.+||.++||+||+.++...++.+|++
T Consensus 161 -VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred -ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 999999999999999876 38999999999999999999999987 9999999999999999999999999999
Q ss_pred HcccCCCC--CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHhh-hCCCCc
Q 000962 252 FHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQI-MGIRSP 328 (1208)
Q Consensus 252 ~~~~~~~~--~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~ 328 (1208)
.++..... ....++++..|.+.|++|||||||||||+. .+|+.+..++|....||||++|||++.||.. +++...
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 98875444 333478999999999999999999999987 5799999999999899999999999999998 888889
Q ss_pred EeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCChhHHHHHHhhcccccc
Q 000962 329 YLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKILSSDIWELE 408 (1208)
Q Consensus 329 ~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~ 408 (1208)
++++.|+++|||+||++.||..... .++.++++|++|+++|+|+|||++++|+.|+.|.+.++|+++.+...+...
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~----~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLG----SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred ccccccCccccHHHHHHhhcccccc----ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 9999999999999999999987442 345589999999999999999999999999999999999999998777643
Q ss_pred cCC-CCCCCCccchhccccCCChhHHHHHHHhccCCCCCccChHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHh
Q 000962 409 EGS-SNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLG 487 (1208)
Q Consensus 409 ~~~-~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~ 487 (1208)
... ...+.++++|++||+.||+++|.||+|||+||+||+|+++.||.+|+||||+.+..++..+ +++|+.|+.+|++
T Consensus 388 ~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~--~d~G~~~i~~LV~ 465 (889)
T KOG4658|consen 388 ADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA--EDVGYDYIEELVR 465 (889)
T ss_pred CCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch--hcchHHHHHHHHH
Confidence 332 3356899999999999999999999999999999999999999999999999875544444 9999999999999
Q ss_pred ccCcccccC-CCcceEEEhhhHHHHHHHhcC-----CCccEEEEecC-CC--CCCCCCCCceeEEEEEcccCCCCccccc
Q 000962 488 RSFFQSSNI-DDKVKYQMHDLFHDLAQFVSS-----PYGHVCQVKDD-RS--SCSSCCSPETRHVSLLCKHVEKPALSVV 558 (1208)
Q Consensus 488 ~sll~~~~~-~~~~~~~mhdlv~~~a~~~~~-----~~~~~~~~~~~-~~--~~~~~~~~~~r~lsl~~~~~~~~~~~~~ 558 (1208)
++|++..+. ++..+|+|||+|||||.++++ +++ ..+.++ .. .........+|+++++++.+..... -
T Consensus 466 ~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~--~ 541 (889)
T KOG4658|consen 466 ASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAG--S 541 (889)
T ss_pred HHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccccccccchhheeEEEEeccchhhccC--C
Confidence 999998764 356789999999999999999 665 333332 11 1101124578999999998776554 3
Q ss_pred cCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCC-CCcccccccccCCcccEEeecCCCccccchhhccCC
Q 000962 559 ENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSS-TLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1208)
Q Consensus 559 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1208)
..+++|++|.+. .... .+..+...+|..++.||||||++| .+..+|++|++|.+||||+|+++.|..+|..+++|+
T Consensus 542 ~~~~~L~tLll~--~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 542 SENPKLRTLLLQ--RNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred CCCCccceEEEe--ecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHH
Confidence 456689999998 2111 356667788999999999999987 467999999999999999999999999999999999
Q ss_pred cccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCC-
Q 000962 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTG- 716 (1208)
Q Consensus 638 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~- 716 (1208)
.|.+||+..+..+..+|..+..|++||+|.+......... ..++.+.+|++|....+...+......+..+.+|..
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~---~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~ 695 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK---LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSL 695 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccccccch---hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHH
Confidence 9999999998877777777778999999999775421111 223444455555444433222222233333433331
Q ss_pred --ceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCccc
Q 000962 717 --KLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWM 794 (1208)
Q Consensus 717 --~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 794 (1208)
.+.+.. .........+..+.+|+.|.+..+.......... ....... .++++.++.+.++.....+.|.
T Consensus 696 ~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~----~~~~~~~---~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 696 LQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVIEWE----ESLIVLL---CFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred hHhhhhcc--cccceeecccccccCcceEEEEcCCCchhhcccc----cccchhh---hHHHHHHHHhhccccccccchh
Confidence 111111 1223344555666677777776654431110000 0000000 1223444444444444455554
Q ss_pred ccCCCCceeEEEEeCcCCCCcc
Q 000962 795 RDGRLQNLVSLTLKGCTNCRIL 816 (1208)
Q Consensus 795 ~~~~l~~L~~L~L~~~~~~~~~ 816 (1208)
...++|+.|.+..|...+.+
T Consensus 767 --~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 767 --LFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred --hccCcccEEEEecccccccC
Confidence 23566666666666555544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5e-65 Score=657.64 Aligned_cols=692 Identities=20% Similarity=0.314 Sum_probs=467.7
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEe---cCC-------
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV---TVD------- 239 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~------- 239 (1208)
...+|||++.++++..+|.... .++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred cccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccc
Confidence 4569999999999999886433 5689999999999999999999998 78889999888742 111
Q ss_pred ----CC-hHHHHHHHHHHcccCCCC-CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEe
Q 000962 240 ----YD-LPRILKGMIEFHSKMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVT 313 (1208)
Q Consensus 240 ----~~-~~~~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 313 (1208)
++ ...++++++..+...... ... ...+++.|++||+||||||||+. ..|+.+.....+.++||+||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEE
Confidence 01 123344444444322211 111 14567778999999999999865 5788888776667899999999
Q ss_pred cCChhHHhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCCh
Q 000962 314 SRTARVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDV 393 (1208)
Q Consensus 314 tR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~ 393 (1208)
||+..++..++....|+++.+++++||+||+++||+... +++++.+++++|+++|+|+||||+++|++|+.+ +.
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-----~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~ 404 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-----PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DK 404 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-----CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CH
Confidence 999999988778889999999999999999999998654 345688999999999999999999999999875 67
Q ss_pred hHHHHHHhhcccccccCCCCCCCCccchhccccCCCh-hHHHHHHHhccCCCCCccChHHHHHHHHHccccccCCCCCCc
Q 000962 394 NKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPP-FLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQE 472 (1208)
Q Consensus 394 ~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~ 472 (1208)
.+|+.++++..... +.+|.++|++||++|++ ..|.||+++|+||.++.++ .+..|+|.+....
T Consensus 405 ~~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------- 468 (1153)
T PLN03210 405 EDWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------- 468 (1153)
T ss_pred HHHHHHHHHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-------
Confidence 89999998754322 35799999999999986 5999999999999987553 4778888765431
Q ss_pred cHHHHHHHHHHHHHhccCcccccCCCcceEEEhhhHHHHHHHhcCCCcc----EEEEecCCCC----CCCCCCCceeEEE
Q 000962 473 REEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVSSPYGH----VCQVKDDRSS----CSSCCSPETRHVS 544 (1208)
Q Consensus 473 ~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~r~ls 544 (1208)
+..++.|+++|||+... .++.|||++|+||+.++.++.. ..++.+.... ........++.++
T Consensus 469 ------~~~l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~ 538 (1153)
T PLN03210 469 ------NIGLKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGIT 538 (1153)
T ss_pred ------hhChHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEE
Confidence 12388999999998753 4799999999999999876520 0011100000 0000112333333
Q ss_pred EEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCC------Cc-ccccccccCC-cc
Q 000962 545 LLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSST------LT-VLPDSVEELK-LL 616 (1208)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~------i~-~lp~~i~~l~-~L 616 (1208)
+....+ ..+ .+...+|.+|++|+.|.+..+. +. .+|..+..++ +|
T Consensus 539 l~~~~~--------------~~~-------------~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~L 591 (1153)
T PLN03210 539 LDIDEI--------------DEL-------------HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKL 591 (1153)
T ss_pred eccCcc--------------cee-------------eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCccc
Confidence 322111 111 1234567788888888876543 22 4676666664 58
Q ss_pred cEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceE
Q 000962 617 RYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1208)
Q Consensus 617 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1208)
|+|.+.++.++.+|..+ ...+|+.|++++|. +..+|..+..+++|+.|+++++. .+..+| .++.+++|++|++.+
T Consensus 592 r~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~--~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 592 RLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSK--NLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred EEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCC--CcCcCC-ccccCCcccEEEecC
Confidence 88888888888888776 46788888888776 56677777777777777776652 123333 133333333333221
Q ss_pred ecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCC
Q 000962 697 VGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPN 776 (1208)
Q Consensus 697 ~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 776 (1208)
|
T Consensus 667 c------------------------------------------------------------------------------- 667 (1153)
T PLN03210 667 C------------------------------------------------------------------------------- 667 (1153)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCceecCCCCCCccccccccCCC
Q 000962 777 LEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNC 855 (1208)
Q Consensus 777 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 855 (1208)
.....+|..+ +.+++|+.|++++|...+.+ ...++++|+.|++++|..++.++
T Consensus 668 --------~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p---------------- 721 (1153)
T PLN03210 668 --------SSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP---------------- 721 (1153)
T ss_pred --------CCccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc----------------
Confidence 1112344444 44667777777776555444 22256666666666665444333
Q ss_pred CCCCccCccCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEEec
Q 000962 856 PRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAI 935 (1208)
Q Consensus 856 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 935 (1208)
....+|+.|.+.++. +..+|.. ..+++|..|.+.
T Consensus 722 -------~~~~nL~~L~L~~n~-i~~lP~~--------------------------------------~~l~~L~~L~l~ 755 (1153)
T PLN03210 722 -------DISTNISWLDLDETA-IEEFPSN--------------------------------------LRLENLDELILC 755 (1153)
T ss_pred -------cccCCcCeeecCCCc-ccccccc--------------------------------------cccccccccccc
Confidence 333444444444321 2222210 012233333333
Q ss_pred CCCCCCCCCCCCCCCeEEEeccCCCCCCCC--CccccccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCCCcCCCC
Q 000962 936 NCPKLRGLPQIFAPQKLEISGCDLLSTLPN--SEFSQRLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNLDSFPRW 1012 (1208)
Q Consensus 936 ~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~--~~~~~~L~~L~L~~~~-~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~ 1012 (1208)
+|.... + .+ . ...++. ...+++|+.|++++|. ....|..+.++++|+.|++++|..++.+|..
T Consensus 756 ~~~~~~-l-----------~~-~-~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 756 EMKSEK-L-----------WE-R-VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccchhh-c-----------cc-c-ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 222110 0 00 0 000010 0224688999999887 5667778888999999999999888888876
Q ss_pred CCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCC-CCcCCCCEEEEecCCCCcccCCcCCCCCCC
Q 000962 1013 PNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDE-GLPTSLKCLIIASCSGLKSLGPRGTLKSLN 1091 (1208)
Q Consensus 1013 ~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~ 1091 (1208)
.++++|+.|++++|..+..+|. ..++|+.|++++| .++.+|.. ...++|+.|++++|+.++.+|. .+..++
T Consensus 822 ~~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~ 893 (1153)
T PLN03210 822 INLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLK 893 (1153)
T ss_pred CCccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc--cccccc
Confidence 6788999999999988877763 2467889999887 46667643 1227899999999999999888 788889
Q ss_pred CCCceeecCCCCCCCCCCC
Q 000962 1092 SLKDFYIEDCPLLQSFPED 1110 (1208)
Q Consensus 1092 ~L~~L~l~~c~~l~~lp~~ 1110 (1208)
+|+.|++++|+.+..++..
T Consensus 894 ~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 894 HLETVDFSDCGALTEASWN 912 (1153)
T ss_pred CCCeeecCCCcccccccCC
Confidence 9999999999888876543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-43 Score=394.32 Aligned_cols=281 Identities=34% Similarity=0.611 Sum_probs=228.8
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHccc
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK 255 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 255 (1208)
||.++++|.++|.... ...++|+|+||||+||||||++++++..++.+|+.++||.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999843 568999999999999999999999977799999999999999999999999999999987
Q ss_pred CCC---CCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHhhhCC-CCcEeC
Q 000962 256 MEQ---STSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGI-RSPYLL 331 (1208)
Q Consensus 256 ~~~---~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 331 (1208)
... ...+...+...+.+.|+++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 3567788999999999999999999999876 5788888888877789999999999999877654 578999
Q ss_pred CCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCChhHHHHHHhhcccccccCC
Q 000962 332 EYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKILSSDIWELEEGS 411 (1208)
Q Consensus 332 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~ 411 (1208)
++|+++||++||++.++..... ..+..++.+++|+++|+|+||||+++|++|+.+.+..+|.++++...+......
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~----~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~ 230 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESE----SPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR 230 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS--------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS
T ss_pred cccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999876511 345567889999999999999999999999766677899999887555543322
Q ss_pred CCCCCCccchhccccCCChhHHHHHHHhccCCCCCccChHHHHHHHHHccccccC
Q 000962 412 SNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSR 466 (1208)
Q Consensus 412 ~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~ 466 (1208)
.....+..++.+||+.||+++|.||+|||+||+++.|+++.++++|+|||||...
T Consensus 231 ~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 231 DYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp GSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 2345788999999999999999999999999999999999999999999999743
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.1e-37 Score=401.06 Aligned_cols=522 Identities=21% Similarity=0.185 Sum_probs=364.9
Q ss_pred CceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhh-hhHHHHhccCCcccEEecCCCCCc-ccccccccCCc
Q 000962 538 PETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFG-RALDKIFHQLKYLRLLDLSSSTLT-VLPDSVEELKL 615 (1208)
Q Consensus 538 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~ 615 (1208)
..++.+.+..+.+.......+..+++|+.|.+. .+.+. .++...|..+++|++|+|++|.+. .+|. +.+++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls-----~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLS-----NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECC-----CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 468889998887776556668889999999997 34443 455566779999999999999987 5664 56899
Q ss_pred ccEEeecCCCcc-ccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCc
Q 000962 616 LRYLDLSRTEIK-VLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHV 694 (1208)
Q Consensus 616 Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l 694 (1208)
|++|+|++|.+. .+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+. +.+|..++++++|++|++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV--GQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc--CcCChHHcCcCCccEEEC
Confidence 999999999987 78999999999999999999988899999999999999999999765 568889999999999998
Q ss_pred eEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCC
Q 000962 695 FRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPH 774 (1208)
Q Consensus 695 ~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 774 (1208)
.++ ...+..+..++.+++|+ .|.+.... .....+..+.++++|+.|+++.|...... +..+..+
T Consensus 220 ~~n-~l~~~~p~~l~~l~~L~-~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-------------p~~l~~l 283 (968)
T PLN00113 220 GYN-NLSGEIPYEIGGLTSLN-HLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPI-------------PPSIFSL 283 (968)
T ss_pred cCC-ccCCcCChhHhcCCCCC-EEECcCce-eccccChhHhCCCCCCEEECcCCeeeccC-------------chhHhhc
Confidence 875 34445556677777666 44443221 11233445666677777777766543222 1344556
Q ss_pred CCCcEEEEeee-CCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecC-CCCCCcccccc
Q 000962 775 PNLEELQIFNY-FGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRL 850 (1208)
Q Consensus 775 ~~L~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L 850 (1208)
++|+.|+++++ ....+|.++ ..+++|+.|++++|.+.+.. .++.+++|+.|++++|.....++ .+..+..|+.|
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred cCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 67777777744 334566666 45777777777777666554 46677777777777776554444 34556667777
Q ss_pred ccCCCCCCCccCc---cCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccc
Q 000962 851 KISNCPRLNELPE---CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQ 927 (1208)
Q Consensus 851 ~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1208)
++++|...+.+|. .+++|+.|.+.++.-...+|. ....++
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-------------------------------------~~~~~~ 404 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-------------------------------------SLGACR 404 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-------------------------------------HHhCCC
Confidence 7777766555554 234555555555432222221 123455
Q ss_pred cccEEEecCCCCCCCCC----CCCCCCeEEEeccCCCCCCCCC-ccccccceeeecCCCCCccccCCCCCCCCCEEeecC
Q 000962 928 TLLEMKAINCPKLRGLP----QIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSK 1002 (1208)
Q Consensus 928 ~L~~L~l~~c~~L~~l~----~~~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~ 1002 (1208)
+|+.|.+.+|.-...+| ..+.++.|++++|.+.+.+|.. ..+++|+.|++++|............++|+.|++++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence 66666666664332222 3456678888888877766654 446788888888887433333333457888888888
Q ss_pred CCCCCcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCC-CcCCCCEEEEecCCCCcc
Q 000962 1003 ISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEG-LPTSLKCLIIASCSGLKS 1080 (1208)
Q Consensus 1003 n~~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~-~~~~L~~L~l~~c~~l~~ 1080 (1208)
|.+.+.+|. +..+++|+.|+|++|.....+| ..+.++++|++|+|++|...+.+|... -.++|++|++++|...+.
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIP--DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCC--hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence 888777775 5778888888888888555666 467788888888888887665665421 127888888888887777
Q ss_pred cCCcCCCCCCCCCCceeecCCCCCCCCCCCCCCCccceEeccCChhh
Q 000962 1081 LGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCPLL 1127 (1208)
Q Consensus 1081 lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~L 1127 (1208)
+|. .+.++++|+.|++++|+..+.+|..+...++....+.+|+.+
T Consensus 563 ~p~--~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 563 IPK--NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred CCh--hHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 877 788888888888888888888887666555655666666643
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-36 Score=393.66 Aligned_cols=497 Identities=20% Similarity=0.234 Sum_probs=365.2
Q ss_pred CCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCc-ccccccc-cCCcccEEeecCCCcc-ccchhhccCCc
Q 000962 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT-VLPDSVE-ELKLLRYLDLSRTEIK-VLPNSICNLYN 638 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~l~~Lr~L~L~~~~i~-~lp~~i~~L~~ 638 (1208)
.+++.|.+. .+.+.+.++..|..+++|++|+|++|.+. .+|..+. .+.+|++|+|++|.+. .+|. +.+++
T Consensus 69 ~~v~~L~L~-----~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLS-----GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CcEEEEEec-----CCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 468888887 34455556778999999999999999998 7888765 9999999999999987 4554 67899
Q ss_pred ccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCce
Q 000962 639 LQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKL 718 (1208)
Q Consensus 639 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L 718 (1208)
|++|++++|.+.+.+|..++++++|++|++++|.+. +.+|..++++++|++|++.++ ...+..+..++++++|+ .+
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~-~L 217 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV--GKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLK-WI 217 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCccc--ccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCcc-EE
Confidence 999999999988899999999999999999999765 568899999999999999875 34445566677776666 44
Q ss_pred eeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeee-CCCCCCcccccC
Q 000962 719 HISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNY-FGNSLPQWMRDG 797 (1208)
Q Consensus 719 ~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~ 797 (1208)
.+.... .....+..+..+.+|+.|++++|...... +..+..+++|+.|+++++ ..+.+|.++ .
T Consensus 218 ~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-------------p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~ 281 (968)
T PLN00113 218 YLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPI-------------PSSLGNLKNLQYLFLYQNKLSGPIPPSI--F 281 (968)
T ss_pred ECcCCc-cCCcCChhHhcCCCCCEEECcCceecccc-------------ChhHhCCCCCCEEECcCCeeeccCchhH--h
Confidence 433221 11233344566677777777766443222 234556667777777644 334566666 4
Q ss_pred CCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecC-CCCCCccccccccCCCCCCCccCc---cCCCcCEE
Q 000962 798 RLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVM 871 (1208)
Q Consensus 798 ~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L 871 (1208)
.+++|+.|+|++|.+.... .+..+++|++|++++|...+.++ .+..++.|+.|++++|...+.+|. .+++|+.|
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 5677777777777665544 45667777777777776554443 345566677777777766655554 33445555
Q ss_pred EEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCCCCC----CCC
Q 000962 872 KIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLP----QIF 947 (1208)
Q Consensus 872 ~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~----~~~ 947 (1208)
++.++.-...+|. ....++.|+.|.+.++.-...+| .+.
T Consensus 362 ~Ls~n~l~~~~p~-------------------------------------~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 362 DLSTNNLTGEIPE-------------------------------------GLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred ECCCCeeEeeCCh-------------------------------------hHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 5554332211111 12234567777777765444444 456
Q ss_pred CCCeEEEeccCCCCCCCCC-ccccccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcC
Q 000962 948 APQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRD 1025 (1208)
Q Consensus 948 ~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~-~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~ 1025 (1208)
+|+.|++++|++.+.+|.. ..+++|+.|++++|. .+..+..+..+++|+.|++++|.+.+.+|.....++|+.|++++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence 7899999999988777765 567899999999998 45556667788999999999999988888866678999999999
Q ss_pred CCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCC-CcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCC
Q 000962 1026 CKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEG-LPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLL 1104 (1208)
Q Consensus 1026 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~-~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l 1104 (1208)
|+..+.+| ..+.++++|+.|++++|.....+|... -.++|++|+|++|...+.+|. .+..+++|+.|++++|...
T Consensus 485 n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 485 NQFSGAVP--RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA--SFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred CccCCccC--hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh--hHhCcccCCEEECCCCccc
Confidence 98666666 568899999999999997666776531 237899999999998778887 8999999999999999888
Q ss_pred CCCCCC-CCCCccceEeccCChh
Q 000962 1105 QSFPED-GLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1105 ~~lp~~-~~~~sL~~L~l~~c~~ 1126 (1208)
+.+|.. ..+++|+.|++++|+.
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcc
Confidence 888875 4568899999999986
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=3.7e-30 Score=265.83 Aligned_cols=468 Identities=21% Similarity=0.257 Sum_probs=237.6
Q ss_pred ccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceee
Q 000962 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 667 (1208)
.++..|.||++++|.+.++|.+++.+..++.|+.++|++..+|+.++.+..|..|+.++|. ..++|.+++.+..|..|+
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLD 143 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhh
Confidence 4455555555555555555555555555555555555555555555555555555555554 344555555555555555
Q ss_pred cccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeee
Q 000962 668 LEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEW 747 (1208)
Q Consensus 668 l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 747 (1208)
..+|++ ..+|.+++++.+|..|++.++. .....+..+. ++.|. ++....|.....+..++.+.+|..|+|..
T Consensus 144 ~~~N~i---~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~---~ld~~~N~L~tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 144 ATNNQI---SSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLK---HLDCNSNLLETLPPELGGLESLELLYLRR 215 (565)
T ss_pred cccccc---ccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHH---hcccchhhhhcCChhhcchhhhHHHHhhh
Confidence 555532 3445555555555555544421 1111111111 22222 22233333344445555555666666655
Q ss_pred cCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccE
Q 000962 748 SNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRV 826 (1208)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~ 826 (1208)
|... ++..|..++.|++|++..+....+|..+. ..++++..|||.+|++.+.+ .+..+.+|.+
T Consensus 216 Nki~---------------~lPef~gcs~L~Elh~g~N~i~~lpae~~-~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 216 NKIR---------------FLPEFPGCSLLKELHVGENQIEMLPAEHL-KHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred cccc---------------cCCCCCccHHHHHHHhcccHHHhhHHHHh-cccccceeeeccccccccCchHHHHhhhhhh
Confidence 5433 12245555666666666666666666553 35666666666666666655 5555666666
Q ss_pred EEEeCCCCceecCCCCCCccccccccCCCCCCCccCccCCCcCEEEEecccccccCCCCCchhheeee-ccccccccccc
Q 000962 827 LNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILV-DNLELENWNER 905 (1208)
Q Consensus 827 L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~-~~~~~~~~~~~ 905 (1208)
|++++|.....+++++++ .|+.|.+.+|+.-. +.. +|.+|+.- .-++++.-. ...++....+.
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT-iRr--------~ii~~gT~------~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT-IRR--------EIISKGTQ------EVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCCchHH-HHH--------HHHcccHH------HHHHHHHHhhccCCCCCCccc
Confidence 666666555555555555 55555555554211 000 00000000 001111100 00000000000
Q ss_pred ccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCccc----cccceeeecCCC
Q 000962 906 CLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNSEFS----QRLQLLALEGCP 981 (1208)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~~~~~----~~L~~L~L~~~~ 981 (1208)
...........|+... ...+.+.|++++-+ ++.+|...|- .-....+++.|.
T Consensus 344 ---------~e~~~t~~~~~~~~~~--------------~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 344 ---------TETAMTLPSESFPDIY--------------AIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred ---------ccccCCCCCCcccchh--------------hhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccch
Confidence 0000000000111000 01122334444432 3445544221 125567777777
Q ss_pred CCccccCCCCCCCCCEEeecCCCCCCcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCC
Q 000962 982 DGTLVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPD 1060 (1208)
Q Consensus 982 ~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~ 1060 (1208)
..+.|..+..+..+.+.-+..|..++-+|. ++.+++|..|++++|. +.++| ..++.+..|+.|+|+.| ....+|.
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP--~e~~~lv~Lq~LnlS~N-rFr~lP~ 475 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLP--EEMGSLVRLQTLNLSFN-RFRMLPE 475 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcc--hhhhhhhhhheeccccc-ccccchH
Confidence 777777776666665544444445555553 4777788888887776 77777 45777777888888887 3455553
Q ss_pred CCCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCC-CCCCccceEeccCChh
Q 000962 1061 EGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED-GLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1061 ~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~ 1126 (1208)
-.......++.+..+..++.+++ .++.++.+|.+|++.+| .++.+|.. |.+++|++|+++|||.
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~-~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDP-SGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHhhHHHHHHHHhccccccccCh-HHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCcc
Confidence 22112223333444455777776 25778888888888877 67777766 7778888888888875
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=8.7e-28 Score=274.20 Aligned_cols=461 Identities=24% Similarity=0.248 Sum_probs=277.0
Q ss_pred HHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccc
Q 000962 585 KIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLR 664 (1208)
Q Consensus 585 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 664 (1208)
.+..+.-.|++|||++|.+..+|..+..+.+|+.|+++.|.|..+|.+.+++.+|++|+|.+|. +..+|.++..+++|+
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQ 117 (1081)
T ss_pred HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhccc
Confidence 3444455599999999999999999999999999999999999999999999999999999776 889999999999999
Q ss_pred eeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEE
Q 000962 665 NLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLV 744 (1208)
Q Consensus 665 ~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 744 (1208)
+|++++|.+ +.+|..+..++.+..+..+++-. +..++... .. .+.+... .........+..+.+ .|+
T Consensus 118 ~LdlS~N~f---~~~Pl~i~~lt~~~~~~~s~N~~-----~~~lg~~~-ik-~~~l~~n-~l~~~~~~~i~~l~~--~ld 184 (1081)
T KOG0618|consen 118 YLDLSFNHF---GPIPLVIEVLTAEEELAASNNEK-----IQRLGQTS-IK-KLDLRLN-VLGGSFLIDIYNLTH--QLD 184 (1081)
T ss_pred ccccchhcc---CCCchhHHhhhHHHHHhhhcchh-----hhhhcccc-ch-hhhhhhh-hcccchhcchhhhhe--eee
Confidence 999999966 66788888888888888776511 11111111 00 1111100 000111111222222 466
Q ss_pred eeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCccccCCCCCc
Q 000962 745 FEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSL 824 (1208)
Q Consensus 745 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L 824 (1208)
|+.|.... -.+..+++|+.|....+....+- -.-++|+.|+.+.|.+.....-..-.+|
T Consensus 185 Lr~N~~~~----------------~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~~~p~p~nl 243 (1081)
T KOG0618|consen 185 LRYNEMEV----------------LDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLDVHPVPLNL 243 (1081)
T ss_pred cccchhhh----------------hhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeeccccccccc
Confidence 66654331 12334445555554433222111 2245666666666666533322233466
Q ss_pred cEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCc---cCCCcCEEEEecccccccCCCCCchhheeeeccccccc
Q 000962 825 RVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELEN 901 (1208)
Q Consensus 825 ~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~ 901 (1208)
++++++++.....+..+..+.+++.+...+|.. ..+|. ...+|+.|.+..| .++.+|.+
T Consensus 244 ~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~---------------- 305 (1081)
T KOG0618|consen 244 QYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPF---------------- 305 (1081)
T ss_pred eeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCc----------------
Confidence 667776665555544445566666665555543 33332 1222222222221 12222211
Q ss_pred ccccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCcc---ccccceeeec
Q 000962 902 WNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNSEF---SQRLQLLALE 978 (1208)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~~~~---~~~L~~L~L~ 978 (1208)
...+..| ++|++..|+ +..+|...+ ..+|+.|+.+
T Consensus 306 ---------------------le~~~sL--------------------~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 306 ---------------------LEGLKSL--------------------RTLDLQSNN-LPSLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred ---------------------cccccee--------------------eeeeehhcc-ccccchHHHhhhhHHHHHHhhh
Confidence 1112233 444444443 233333211 1234445555
Q ss_pred CCCCCcccc-CCCCCCCCCEEeecCCCCCCc-CCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCc
Q 000962 979 GCPDGTLVR-AIPETSSLNFLILSKISNLDS-FPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLE 1056 (1208)
Q Consensus 979 ~~~~~~~~~-~l~~l~~L~~L~ls~n~~~~~-~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~ 1056 (1208)
.|.....+. .=.....|+.|.+.+|.+.+. +|.+.++.+|+.|+|++|+ ++++|. ..+.++..|++|++||| +++
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpa-s~~~kle~LeeL~LSGN-kL~ 420 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPA-SKLRKLEELEELNLSGN-KLT 420 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCH-HHHhchHHhHHHhcccc-hhh
Confidence 544322221 112345677777777776653 4556777888888888877 777775 46778888888888887 477
Q ss_pred cCCCCCCc-CCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCC-CCCC-CccceEeccCChhhHHhhhc
Q 000962 1057 TLPDEGLP-TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPE-DGLP-ENLQHLVIQNCPLLTQQCRD 1133 (1208)
Q Consensus 1057 ~lp~~~~~-~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~-~~~~-~sL~~L~l~~c~~L~~~~~~ 1133 (1208)
.+|..... ..|++|...+|. +..+|+ +..++.|+.++++.| .++.+-. ...| ++|++||++||+.+.-
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~-l~~fPe---~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~---- 491 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQ-LLSFPE---LAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVF---- 491 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCc-eeechh---hhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCccccc----
Confidence 77743222 677777776654 677775 888899999999877 5554322 2466 8999999999985322
Q ss_pred CCCCCCCCCccccCCceEECce
Q 000962 1134 GEAEGPEWPKIKDIPDLEIDFI 1155 (1208)
Q Consensus 1134 ~~~~g~~~~~i~~l~~l~i~~~ 1155 (1208)
+.+..+.+.++....++.+
T Consensus 492 ---d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 492 ---DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ---chhhhHHhhhhhheecccC
Confidence 4455666677777666654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.9e-27 Score=255.40 Aligned_cols=364 Identities=21% Similarity=0.270 Sum_probs=215.3
Q ss_pred cCCcccEEecCCCCCc--ccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhccccccccee
Q 000962 589 QLKYLRLLDLSSSTLT--VLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 666 (1208)
-++..|-.|+++|.++ .+|.....+..++.|.|..+++..+|+.++.|.+|++|.++.|+ +.++-..+..|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHH
Confidence 3566788899999998 79999999999999999999999999999999999999999988 55666778899999999
Q ss_pred ecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEee
Q 000962 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1208)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 746 (1208)
.+..|++.+ ..+|..|-+|..|.+|+++.+. |+
T Consensus 84 ~~R~N~LKn-sGiP~diF~l~dLt~lDLShNq---------------L~------------------------------- 116 (1255)
T KOG0444|consen 84 IVRDNNLKN-SGIPTDIFRLKDLTILDLSHNQ---------------LR------------------------------- 116 (1255)
T ss_pred hhhcccccc-CCCCchhcccccceeeecchhh---------------hh-------------------------------
Confidence 999988754 5688888888888888776641 11
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCcc
Q 000962 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLR 825 (1208)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~ 825 (1208)
+++..+..-.++-.|+|++|.+.++|..++ .++..|-.|+|++|++...+ ....+..|+
T Consensus 117 -------------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 117 -------------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred -------------------hcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 122334444556666777666677776554 34555666666666554443 344455555
Q ss_pred EEEEeCCCCceecCCCCCCccccccccCCCCCCCccCccCCCcCEEEEecccccccCCCCCchhheeeeccccccccccc
Q 000962 826 VLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNER 905 (1208)
Q Consensus 826 ~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~ 905 (1208)
+|.|++|+.... .+..+| ++.+|+.|.+++ ..
T Consensus 177 tL~Ls~NPL~hf-------------------QLrQLP-smtsL~vLhms~--------------------Tq-------- 208 (1255)
T KOG0444|consen 177 TLKLSNNPLNHF-------------------QLRQLP-SMTSLSVLHMSN--------------------TQ-------- 208 (1255)
T ss_pred hhhcCCChhhHH-------------------HHhcCc-cchhhhhhhccc--------------------cc--------
Confidence 555555431100 000011 112222222211 10
Q ss_pred ccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCeEEEeccCCCCCCCCC-ccccccceeeecCCCCCc
Q 000962 906 CLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGT 984 (1208)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~~~~ 984 (1208)
.-+..+|.+ ..+.+|..++++.|+.-.
T Consensus 209 ----------------------------------------------------RTl~N~Ptsld~l~NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 209 ----------------------------------------------------RTLDNIPTSLDDLHNLRDVDLSENNLPI 236 (1255)
T ss_pred ----------------------------------------------------chhhcCCCchhhhhhhhhccccccCCCc
Confidence 001112222 234455555555555555
Q ss_pred cccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCC-CccCCCC-C
Q 000962 985 LVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPK-LETLPDE-G 1062 (1208)
Q Consensus 985 ~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~-l~~lp~~-~ 1062 (1208)
.|..+.++.+|+.|+||+|.+...--..+.+.+|++|++|.|+ ++.+| ..++.|+.|+.|.+.+|.. .+.||.+ +
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP--~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLP--DAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccch--HHHhhhHHHHHHHhccCcccccCCccchh
Confidence 5555555566666666666543321122344555666666665 55555 4556666666666655531 1223321 1
Q ss_pred CcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCC-CCCCccceEeccCChhh
Q 000962 1063 LPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED-GLPENLQHLVIQNCPLL 1127 (1208)
Q Consensus 1063 ~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~L 1127 (1208)
-...|+.+..++|. ++-+|+ ++..|..|+.|.+++| .+-.+|+. .+++-|+.||+..||+|
T Consensus 314 KL~~Levf~aanN~-LElVPE--glcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNK-LELVPE--GLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhHHHHhhccc-cccCch--hhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCc
Confidence 11445555554433 555665 6666666666666655 44455554 55566666666666654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.2e-25 Score=239.75 Aligned_cols=337 Identities=20% Similarity=0.154 Sum_probs=183.1
Q ss_pred ccEEecCCCCCccc-ccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccc
Q 000962 593 LRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM 671 (1208)
Q Consensus 593 Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n 671 (1208)
-+.||+++|.+.++ +..|.++++|+.+++..|.++.+|.......+|+.|+|.+|.+...-.+.+..++.||.|||+.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34577777777744 34467777777777777777777776666667777777776643333445666777777777776
Q ss_pred cccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCC
Q 000962 672 FWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNR 751 (1208)
Q Consensus 672 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 751 (1208)
.++. +|.. .+....++++|+|++|...
T Consensus 160 ~is~---i~~~--------------------------------------------------sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 160 LISE---IPKP--------------------------------------------------SFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred hhhc---ccCC--------------------------------------------------CCCCCCCceEEeecccccc
Confidence 4432 2211 1122234555555555443
Q ss_pred CCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEE
Q 000962 752 DSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNI 829 (1208)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L 829 (1208)
.... ..|..+.+|..|.|++|..+.+|...+ ..+++|+.|+|..|.+.... .|.+|++|+.|.|
T Consensus 187 ~l~~-------------~~F~~lnsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 187 TLET-------------GHFDSLNSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred cccc-------------ccccccchheeeecccCcccccCHHHh-hhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 2211 234455678888888887788887654 56888888888888765543 7888888888888
Q ss_pred eCCCCceecC-CCCCCccccccccCCCCCCCccCccCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccc
Q 000962 830 KGMLELEKWP-NDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLR 908 (1208)
Q Consensus 830 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~ 908 (1208)
..|.....-. .+.++..+++|+|+.|+...--..++-+|+. |+.|+++.|.
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~-----------------L~~L~lS~Na----------- 304 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS-----------------LEQLDLSYNA----------- 304 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccch-----------------hhhhccchhh-----------
Confidence 8775433221 2344566666666665432211112222222 1222222220
Q ss_pred cccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCeEEEeccCCCCCCCCC--ccccccceeeecCCCC-Ccc
Q 000962 909 VIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCPD-GTL 985 (1208)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~~--~~~~~L~~L~L~~~~~-~~~ 985 (1208)
..+...=.-+.|++ |+.|+|++|.+. .++.. ..+..|++|+|+.|.. ...
T Consensus 305 -----------------I~rih~d~Wsftqk---------L~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 305 -----------------IQRIHIDSWSFTQK---------LKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred -----------------hheeecchhhhccc---------ceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHH
Confidence 00000000111222 255555555532 23222 3345666666666652 222
Q ss_pred ccCCCCCCCCCEEeecCCCCCCcCCC----CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCC
Q 000962 986 VRAIPETSSLNFLILSKISNLDSFPR----WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCP 1053 (1208)
Q Consensus 986 ~~~l~~l~~L~~L~ls~n~~~~~~~~----~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 1053 (1208)
...|..+++|+.|||++|.+...+.+ |..+++|+.|++.+|+ +..++. ..|.+|++|++|++.+|.
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecch-hhhccCcccceecCCCCc
Confidence 23445556666666666655444332 3446666666666655 555554 355566666666666654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.9e-22 Score=262.13 Aligned_cols=353 Identities=23% Similarity=0.314 Sum_probs=242.5
Q ss_pred cccCCCCceEEecccCCC-ccchhhhhHHHHhccC-CcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhc
Q 000962 557 VVENSKKLRTFLVPSFGE-HLKDFGRALDKIFHQL-KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSIC 634 (1208)
Q Consensus 557 ~~~~~~~Lr~L~l~~~~~-~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~ 634 (1208)
.|.++++|+.|.+..... ..+.....++..|..+ ..||.|++.++.+..+|..| ...+|+.|+|++|.+..+|..+.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence 367889999988751110 0111111123334444 56999999999999999988 57999999999999999999999
Q ss_pred cCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCC
Q 000962 635 NLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYL 714 (1208)
Q Consensus 635 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 714 (1208)
.+++|++|+|++|..+..+| .+..+++|++|++++|. .+..+|..++++++|+.|++.+|..
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~--~L~~lp~si~~L~~L~~L~L~~c~~--------------- 693 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS--SLVELPSSIQYLNKLEDLDMSRCEN--------------- 693 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC--CccccchhhhccCCCCEEeCCCCCC---------------
Confidence 99999999999988788888 58899999999999874 3467788777777777776654311
Q ss_pred CCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCccc
Q 000962 715 TGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWM 794 (1208)
Q Consensus 715 ~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 794 (1208)
...+|..+
T Consensus 694 ------------------------------------------------------------------------L~~Lp~~i 701 (1153)
T PLN03210 694 ------------------------------------------------------------------------LEILPTGI 701 (1153)
T ss_pred ------------------------------------------------------------------------cCccCCcC
Confidence 01122211
Q ss_pred ccCCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCccCCCcCEEEEe
Q 000962 795 RDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIK 874 (1208)
Q Consensus 795 ~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 874 (1208)
.+++|+.|++++|......+ ...++|++|+|++|.. ..+|.... +++|+.|.+.
T Consensus 702 ---~l~sL~~L~Lsgc~~L~~~p-~~~~nL~~L~L~~n~i-~~lP~~~~---------------------l~~L~~L~l~ 755 (1153)
T PLN03210 702 ---NLKSLYRLNLSGCSRLKSFP-DISTNISWLDLDETAI-EEFPSNLR---------------------LENLDELILC 755 (1153)
T ss_pred ---CCCCCCEEeCCCCCCccccc-cccCCcCeeecCCCcc-cccccccc---------------------cccccccccc
Confidence 25667777777776544331 1246788999888753 33332112 3444444443
Q ss_pred cccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCeEEE
Q 000962 875 KCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEI 954 (1208)
Q Consensus 875 ~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l 954 (1208)
+|......... ..+..+... ..++|+.|++
T Consensus 756 ~~~~~~l~~~~-----------------------------------------~~l~~~~~~---------~~~sL~~L~L 785 (1153)
T PLN03210 756 EMKSEKLWERV-----------------------------------------QPLTPLMTM---------LSPSLTRLFL 785 (1153)
T ss_pred ccchhhccccc-----------------------------------------cccchhhhh---------ccccchheeC
Confidence 33211100000 000000000 0123366666
Q ss_pred eccCCCCCCCCC-ccccccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcCCCCCcCC
Q 000962 955 SGCDLLSTLPNS-EFSQRLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSL 1032 (1208)
Q Consensus 955 ~~~~~l~~lp~~-~~~~~L~~L~L~~~~-~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~ 1032 (1208)
++|+....+|.. ..+++|+.|++++|. ....|..+ ++++|+.|++++|..+..+|.. .++|+.|+|++|. ++.+
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~i 861 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEV 861 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccC
Confidence 666666666665 557899999999987 44455444 7899999999999988888763 4789999999987 7778
Q ss_pred cccCCCCCCCCcCeEeecCCCCCccCCCCCC-cCCCCEEEEecCCCCcccC
Q 000962 1033 SGEGALQSLTSLNLLSIRGCPKLETLPDEGL-PTSLKCLIIASCSGLKSLG 1082 (1208)
Q Consensus 1033 ~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-~~~L~~L~l~~c~~l~~lp 1082 (1208)
| ..+..+++|+.|++++|++++.+|.... .++|+.|++++|+.+..++
T Consensus 862 P--~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 862 P--WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred h--HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 8 5788999999999999999999986422 2789999999999888664
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=4.6e-27 Score=243.11 Aligned_cols=468 Identities=22% Similarity=0.232 Sum_probs=305.8
Q ss_pred ceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccE
Q 000962 539 ETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRY 618 (1208)
Q Consensus 539 ~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~ 618 (1208)
....+.+..|.+..... ...++..+.++.+. .+.+... +.++..+..++.|+.++|.++.+|+.++.+..|+.
T Consensus 46 ~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~-----~n~l~~l-p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE-DLKNLACLTVLNVH-----DNKLSQL-PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVK 118 (565)
T ss_pred chhhhhhccCchhhccH-hhhcccceeEEEec-----cchhhhC-CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhh
Confidence 33444555555544321 13445555555554 4444443 44567788888888888888888888888888888
Q ss_pred EeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEec
Q 000962 619 LDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG 698 (1208)
Q Consensus 619 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~ 698 (1208)
|+.++|.+..+|++|+.+..|+.|+..+|+ +.++|.++.++.+|..|++.+|.+ ..+|+..-+|+.|++|+...+
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l---~~l~~~~i~m~~L~~ld~~~N- 193 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL---KALPENHIAMKRLKHLDCNSN- 193 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch---hhCCHHHHHHHHHHhcccchh-
Confidence 888888888888888888888888888877 677888888888888888888844 566776666888888876543
Q ss_pred ccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCc
Q 000962 699 SKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLE 778 (1208)
Q Consensus 699 ~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 778 (1208)
.-+..+.+++.+..|. .+. +....-...+.+..+..|++|.+..|..... --+.+..+++|.
T Consensus 194 -~L~tlP~~lg~l~~L~-~Ly---L~~Nki~~lPef~gcs~L~Elh~g~N~i~~l-------------pae~~~~L~~l~ 255 (565)
T KOG0472|consen 194 -LLETLPPELGGLESLE-LLY---LRRNKIRFLPEFPGCSLLKELHVGENQIEML-------------PAEHLKHLNSLL 255 (565)
T ss_pred -hhhcCChhhcchhhhH-HHH---hhhcccccCCCCCccHHHHHHHhcccHHHhh-------------HHHHhcccccce
Confidence 2344556666666544 222 2222222334677788888888876644311 113455788999
Q ss_pred EEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCceecCCCCCC---ccccccc---
Q 000962 779 ELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPNDEDC---RFLGRLK--- 851 (1208)
Q Consensus 779 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~---~~L~~L~--- 851 (1208)
.|++..+...++|..+ .-+.+|++||+++|.+.... ++|++ .|+.|.+.+|+.-..-.++-++ .-|++|.
T Consensus 256 vLDLRdNklke~Pde~--clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPDEI--CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKI 332 (565)
T ss_pred eeeccccccccCchHH--HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhh
Confidence 9999999999999988 56899999999999998887 89999 9999999999754322111111 1122211
Q ss_pred ----cCCCCCCC----c-cCccCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCccccc
Q 000962 852 ----ISNCPRLN----E-LPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLL 922 (1208)
Q Consensus 852 ----l~~~~~l~----~-~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1208)
++.-..-. . .+..|+..
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~~~------------------------------------------------------ 358 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFPDI------------------------------------------------------ 358 (565)
T ss_pred ccCCCCCCcccccccCCCCCCcccch------------------------------------------------------
Confidence 11100000 0 00011110
Q ss_pred ccccccccEEEecCCCCCCCCCCC-------CCCCeEEEeccCCCCCCCCC-cccccc-ceeeecCCCCCccccCCCCCC
Q 000962 923 LHSFQTLLEMKAINCPKLRGLPQI-------FAPQKLEISGCDLLSTLPNS-EFSQRL-QLLALEGCPDGTLVRAIPETS 993 (1208)
Q Consensus 923 ~~~~~~L~~L~l~~c~~L~~l~~~-------~~l~~L~l~~~~~l~~lp~~-~~~~~L-~~L~L~~~~~~~~~~~l~~l~ 993 (1208)
...-..+.|.+++ .+++.+|.. .-.+.++++.|++ ..+|.. ..+..+ ..+.+++|...-.+..++.++
T Consensus 359 -~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~ 435 (565)
T KOG0472|consen 359 -YAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ 435 (565)
T ss_pred -hhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh
Confidence 0011111122211 122233311 0124577777763 345544 333333 445666666777777888999
Q ss_pred CCCEEeecCCCCCCcCC-CCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEE
Q 000962 994 SLNFLILSKISNLDSFP-RWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCL 1070 (1208)
Q Consensus 994 ~L~~L~ls~n~~~~~~~-~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L 1070 (1208)
+|..|++++|. +..+| .++.+..|+.|+|+.|+ ...+| ..+-.+..|+.+- .++..++.++..++. .+|.+|
T Consensus 436 kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP--~~~y~lq~lEtll-as~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 436 KLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNR-FRMLP--ECLYELQTLETLL-ASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred cceeeecccch-hhhcchhhhhhhhhheecccccc-cccch--HHHhhHHHHHHHH-hccccccccChHHhhhhhhccee
Confidence 99999999985 56677 47888889999999996 55666 2333344444444 444468888877554 899999
Q ss_pred EEecCCCCcccCCcCCCCCCCCCCceeecCCCCC
Q 000962 1071 IIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLL 1104 (1208)
Q Consensus 1071 ~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l 1104 (1208)
|+.+|. +..+|+ .+++|++|++|.+++||.-
T Consensus 511 DL~nNd-lq~IPp--~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 511 DLQNND-LQQIPP--ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccCCCc-hhhCCh--hhccccceeEEEecCCccC
Confidence 998876 899999 9999999999999999754
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.5e-23 Score=227.03 Aligned_cols=384 Identities=20% Similarity=0.159 Sum_probs=263.7
Q ss_pred CCceeEEEEEcccCCCCccccccC--CCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCC
Q 000962 537 SPETRHVSLLCKHVEKPALSVVEN--SKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELK 614 (1208)
Q Consensus 537 ~~~~r~lsl~~~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~ 614 (1208)
+...+-+....++++.+..+.+.. .+..++|+++ +|.+..+-...|.++.+|+.+.|..|.++.+|...+...
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldls-----nNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLS-----NNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG 125 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeecc-----ccccccCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence 444555665666665543333332 3566778887 677777778889999999999999999999999888888
Q ss_pred cccEEeecCCCccccc-hhhccCCcccEEecCCCccccccch-hcccccccceeecccccccccccCCccCCCCCcCcCC
Q 000962 615 LLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNL 692 (1208)
Q Consensus 615 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L 692 (1208)
||+.|+|.+|.|..+- +++.-++-|++|||+.|. +..+|. .+..-.++++|+|++|.++.++. ..+..+.+|-+|
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~--~~F~~lnsL~tl 202 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLET--GHFDSLNSLLTL 202 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccccccccc--ccccccchheee
Confidence 9999999999999774 478999999999999987 666664 45566799999999998876544 456677788888
Q ss_pred CceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccC
Q 000962 693 HVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQ 772 (1208)
Q Consensus 693 ~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (1208)
.++.+ ..+...+.. ++++++|+.|+|..|...... .-.|+
T Consensus 203 kLsrN-rittLp~r~--------------------------Fk~L~~L~~LdLnrN~irive-------------~ltFq 242 (873)
T KOG4194|consen 203 KLSRN-RITTLPQRS--------------------------FKRLPKLESLDLNRNRIRIVE-------------GLTFQ 242 (873)
T ss_pred ecccC-cccccCHHH--------------------------hhhcchhhhhhccccceeeeh-------------hhhhc
Confidence 88764 223233333 344556666777666443210 12456
Q ss_pred CCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCcee-cCCCCCCccccc
Q 000962 773 PHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEK-WPNDEDCRFLGR 849 (1208)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~L~~ 849 (1208)
.+++|+.|.+..|....+.+..+ -.+.+++.|+|+.|++...- .+-+|+.|+.|+|++|..-.. +.....++.|+.
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~F-y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAF-YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE 321 (873)
T ss_pred CchhhhhhhhhhcCcccccCcce-eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccccee
Confidence 67778888887666666555433 34788888888888776655 666778888888888754432 223345566666
Q ss_pred cccCCCCCCCccCccCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccc
Q 000962 850 LKISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTL 929 (1208)
Q Consensus 850 L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 929 (1208)
|+|++|....--+..|.. +.
T Consensus 322 LdLs~N~i~~l~~~sf~~----------------------------------------------------------L~-- 341 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRV----------------------------------------------------------LS-- 341 (873)
T ss_pred EeccccccccCChhHHHH----------------------------------------------------------HH--
Confidence 666665432211111111 11
Q ss_pred cEEEecCCCCCCCCCCCCCCCeEEEeccCCCCCCCCC--ccccccceeeecCCCC----CccccCCCCCCCCCEEeecCC
Q 000962 930 LEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCPD----GTLVRAIPETSSLNFLILSKI 1003 (1208)
Q Consensus 930 ~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~~--~~~~~L~~L~L~~~~~----~~~~~~l~~l~~L~~L~ls~n 1003 (1208)
.|+.|.|+.|.+. .+... .++++|++|+|++|.. ......|.++++|+.|.+.+|
T Consensus 342 ------------------~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 342 ------------------QLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred ------------------HhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 2255666666532 22222 4579999999999972 223346778999999999999
Q ss_pred CCCCcCCC--CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCC
Q 000962 1004 SNLDSFPR--WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGC 1052 (1208)
Q Consensus 1004 ~~~~~~~~--~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~ 1052 (1208)
+ +.++|. |..+++|+.|+|.+|. +.++.. ..|..+ .|++|.+..-
T Consensus 403 q-lk~I~krAfsgl~~LE~LdL~~Na-iaSIq~-nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 403 Q-LKSIPKRAFSGLEALEHLDLGDNA-IASIQP-NAFEPM-ELKELVMNSS 449 (873)
T ss_pred e-eeecchhhhccCcccceecCCCCc-ceeecc-cccccc-hhhhhhhccc
Confidence 6 556663 7899999999999999 555544 577777 8888888653
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-24 Score=249.08 Aligned_cols=276 Identities=22% Similarity=0.217 Sum_probs=160.8
Q ss_pred EEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEee
Q 000962 542 HVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDL 621 (1208)
Q Consensus 542 ~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L 621 (1208)
++.+..|..-..+.....+.=+|++|.++ .+. ...+|..+..+.+|+.|.++.|.|..+|.++.++.+|++|+|
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~ls-----nn~-~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLS-----NNQ-ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeecc-----ccc-cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhhee
Confidence 33343333333223334444448888776 222 233445567788899999999999999988999999999999
Q ss_pred cCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccC
Q 000962 622 SRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKS 701 (1208)
Q Consensus 622 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 701 (1208)
.+|.+..+|.++..+++|++||+++|. .+.+|..+..+..+..+..++| ..+..++ .+. .+.+++..+ ...
T Consensus 99 ~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N--~~~~~lg----~~~-ik~~~l~~n-~l~ 169 (1081)
T KOG0618|consen 99 KNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNN--EKIQRLG----QTS-IKKLDLRLN-VLG 169 (1081)
T ss_pred ccchhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcc--hhhhhhc----ccc-chhhhhhhh-hcc
Confidence 999999999999999999999999987 5677878877777777777777 1222221 111 333332221 111
Q ss_pred CCChhhhcCCCCCCCceeeCCccccccccccccCcc--------------------cCcceEEeeecCCCCCCCCCCCCc
Q 000962 702 GYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEK--------------------ESLHKLVFEWSNNRDSSPQSQDVS 761 (1208)
Q Consensus 702 ~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~--------------------~~L~~L~L~~~~~~~~~~~~~~~~ 761 (1208)
+..+.++.++.. + +.+.. |... ...+.++ ++|+.|..+.|.....
T Consensus 170 ~~~~~~i~~l~~-~--ldLr~--N~~~--~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~-------- 234 (1081)
T KOG0618|consen 170 GSFLIDIYNLTH-Q--LDLRY--NEME--VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL-------- 234 (1081)
T ss_pred cchhcchhhhhe-e--eeccc--chhh--hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee--------
Confidence 122222222222 0 01100 0000 1111222 2333333333322110
Q ss_pred cchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCceecCC
Q 000962 762 GDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPN 840 (1208)
Q Consensus 762 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~ 840 (1208)
..-..+.+|+.++++.+....+|.|+ +.+.+|+.|...+|.++..+ .+....+|+.|.+..|.....++.
T Consensus 235 -------~~~p~p~nl~~~dis~n~l~~lp~wi--~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~ 305 (1081)
T KOG0618|consen 235 -------DVHPVPLNLQYLDISHNNLSNLPEWI--GACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPF 305 (1081)
T ss_pred -------ccccccccceeeecchhhhhcchHHH--HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCc
Confidence 11112357788888866667778887 66888888888888776555 556667777777777654444444
Q ss_pred CCCCccccccccCCCC
Q 000962 841 DEDCRFLGRLKISNCP 856 (1208)
Q Consensus 841 ~~~~~~L~~L~l~~~~ 856 (1208)
......|++|+|..|.
T Consensus 306 le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNN 321 (1081)
T ss_pred ccccceeeeeeehhcc
Confidence 4446666666666653
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.7e-23 Score=223.97 Aligned_cols=266 Identities=21% Similarity=0.225 Sum_probs=172.9
Q ss_pred ceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCc--ccccccccCCcc
Q 000962 539 ETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT--VLPDSVEELKLL 616 (1208)
Q Consensus 539 ~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L 616 (1208)
.++.+.+....+..++. .+..+.+|.+|.+. .|.+..+ .+-+..++.||.+++..|++. .+|..|..|..|
T Consensus 33 ~~~WLkLnrt~L~~vPe-EL~~lqkLEHLs~~-----HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPE-ELSRLQKLEHLSMA-----HNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred heeEEEechhhhhhChH-HHHHHhhhhhhhhh-----hhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence 34555555444444432 24455666666554 3443332 344667788888888888876 678888888888
Q ss_pred cEEeecCCCccccchhhccCCcccEEecCCCccccccchhc-ccccccceeecccccccccccCCccCCCCCcCcCCCce
Q 000962 617 RYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDL-ANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVF 695 (1208)
Q Consensus 617 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~ 695 (1208)
..||||+|++++.|..+..-+++-+|+|++|+ +.++|..+ .+|+.|-.|||++|.+ ..+|+.+..|.+|++|.++
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL---e~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL---EMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh---hhcCHHHHHHhhhhhhhcC
Confidence 88888888888888888888888888888877 67777764 5788888888888844 6678888888888888887
Q ss_pred EecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCC
Q 000962 696 RVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHP 775 (1208)
Q Consensus 696 ~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 775 (1208)
++.. .. -.+..|+ .+.+|+.|.++..... ...++..+..+.
T Consensus 182 ~NPL-~h---fQLrQLP-----------------------smtsL~vLhms~TqRT------------l~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 182 NNPL-NH---FQLRQLP-----------------------SMTSLSVLHMSNTQRT------------LDNIPTSLDDLH 222 (1255)
T ss_pred CChh-hH---HHHhcCc-----------------------cchhhhhhhcccccch------------hhcCCCchhhhh
Confidence 6431 11 1122222 2234444555443222 112234555566
Q ss_pred CCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCceecCCCCCCccccccccCC
Q 000962 776 NLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISN 854 (1208)
Q Consensus 776 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~ 854 (1208)
+|..++++.|....+|.-+ -.+++|+.|+|++|.+++.. ..+...+|++|++++|.....+..+..++.|+.|++.+
T Consensus 223 NL~dvDlS~N~Lp~vPecl--y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 223 NLRDVDLSENNLPIVPECL--YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred hhhhccccccCCCcchHHH--hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc
Confidence 7788888866667777766 45888888888888877765 56667788888888876554444444455555554444
Q ss_pred CC
Q 000962 855 CP 856 (1208)
Q Consensus 855 ~~ 856 (1208)
|.
T Consensus 301 Nk 302 (1255)
T KOG0444|consen 301 NK 302 (1255)
T ss_pred Cc
Confidence 43
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.5e-14 Score=173.50 Aligned_cols=116 Identities=29% Similarity=0.307 Sum_probs=58.4
Q ss_pred cccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEee
Q 000962 970 QRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSI 1049 (1208)
Q Consensus 970 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l 1049 (1208)
.+|++|+|++|.....|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|+ ++.+|. ..++|+.|++
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l--~~~L~~LdLs~N~-Lt~LP~-----l~s~L~~LdL 409 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL--PSGLKELIVSGNR-LTSLPV-----LPSELKELMV 409 (788)
T ss_pred cccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc--ccccceEEecCCc-ccCCCC-----cccCCCEEEc
Confidence 3455555555554333322 134555556555433 34432 2355666666554 444442 1245556666
Q ss_pred cCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCC
Q 000962 1050 RGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPL 1103 (1208)
Q Consensus 1050 ~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~ 1103 (1208)
++|. +..+|. ++.+|+.|++++|. ++.+|. .+.++++|+.|++++|+.
T Consensus 410 S~N~-LssIP~--l~~~L~~L~Ls~Nq-Lt~LP~--sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 410 SGNR-LTSLPM--LPSGLLSLSVYRNQ-LTRLPE--SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cCCc-CCCCCc--chhhhhhhhhccCc-ccccCh--HHhhccCCCeEECCCCCC
Confidence 6653 444543 33455556665544 455555 455566666666666543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=1.9e-14 Score=172.69 Aligned_cols=75 Identities=24% Similarity=0.249 Sum_probs=61.0
Q ss_pred CcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeeccc
Q 000962 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEE 670 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 670 (1208)
..-.+|+|+++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++|. +..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccC
Confidence 456789999999999999876 4899999999999999863 5789999999987 5567743 45788888888
Q ss_pred cccc
Q 000962 671 MFWF 674 (1208)
Q Consensus 671 n~~~ 674 (1208)
|.+.
T Consensus 272 N~L~ 275 (788)
T PRK15387 272 NPLT 275 (788)
T ss_pred Cchh
Confidence 8654
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-15 Score=159.24 Aligned_cols=124 Identities=24% Similarity=0.236 Sum_probs=104.1
Q ss_pred cchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccEEeecC-CCccccch-hhccCCcccEEecCCCccccc
Q 000962 576 LKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSR-TEIKVLPN-SICNLYNLQTLKLIGCIWIME 652 (1208)
Q Consensus 576 ~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~ 652 (1208)
.|.+..+++.+|+.+++||.|||++|+|+.| |+.|.+|..|-.|-+.+ |+|+.+|. .|++|..|+.|.+.-|.....
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 6778889999999999999999999999955 88899999988887776 89999998 699999999999998886666
Q ss_pred cchhcccccccceeecccccccccccCCc-cCCCCCcCcCCCceEecccCC
Q 000962 653 LPKDLANLVKLRNLELEEMFWFKCSTLPA-GIGKLTNLHNLHVFRVGSKSG 702 (1208)
Q Consensus 653 lp~~i~~L~~L~~L~l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~ 702 (1208)
....+..|++|..|.+.+|.+ ..++. .+..+.+++++.+..+.....
T Consensus 156 r~~al~dL~~l~lLslyDn~~---q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKI---QSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred hHHHHHHhhhcchhcccchhh---hhhccccccchhccchHhhhcCccccc
Confidence 667889999999999999855 44555 567888999998877654433
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=1.2e-15 Score=159.26 Aligned_cols=283 Identities=19% Similarity=0.141 Sum_probs=189.4
Q ss_pred CCCceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCC-CCCcccccc-cccC
Q 000962 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSS-STLTVLPDS-VEEL 613 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp~~-i~~l 613 (1208)
.|+++..|.+-.|.+..++..+|..+++||.|+++ .|.+..+-+.+|++++.|..|-+-+ |.|+.+|.. |++|
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-----~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-----KNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceeccc-----ccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 57788899999999999999999999999999998 7889999999999999988877766 899999875 9999
Q ss_pred CcccEEeecCCCccccc-hhhccCCcccEEecCCCccccccch-hcccccccceeecccccccccccCCccCCCCCcCcC
Q 000962 614 KLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHN 691 (1208)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~ 691 (1208)
..|+.|.+.-|++.-++ ..|..|++|..|.+..|. ...++. .+..+..++++.+..|.+... .+++.|..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icd-------CnL~wla~ 211 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICD-------CNLPWLAD 211 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccc-------cccchhhh
Confidence 99999999999999665 479999999999999887 666776 788999999999988853211 22332222
Q ss_pred CCceEecccCCC---ChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHh
Q 000962 692 LHVFRVGSKSGY---RIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLL 768 (1208)
Q Consensus 692 L~l~~~~~~~~~---~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 768 (1208)
.........++. .+..+..- .+..... .........+.+--.+.+...... . .
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~-------Ri~q~~a-----~kf~c~~esl~s~~~~~d~~d~~c---------P---~ 267 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYK-------RINQEDA-----RKFLCSLESLPSRLSSEDFPDSIC---------P---A 267 (498)
T ss_pred HHhhchhhcccceecchHHHHHH-------Hhcccch-----hhhhhhHHhHHHhhccccCcCCcC---------h---H
Confidence 111111111111 00000000 0000000 000000001100000001000001 1 1
Q ss_pred hccCCCCCCcEEEEeeeCCCCC-CcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecC-CCCCC
Q 000962 769 EDLQPHPNLEELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDC 844 (1208)
Q Consensus 769 ~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~ 844 (1208)
..+..+++|++|+++||..+.+ +.|| ..+..++.|.|..|++.... .|.++..|+.|+|.+|......+ .+..+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aF--e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAF--EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhh--cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 2366778899999988777665 4466 56888899999988776655 78888999999999987665443 45667
Q ss_pred ccccccccCCCCC
Q 000962 845 RFLGRLKISNCPR 857 (1208)
Q Consensus 845 ~~L~~L~l~~~~~ 857 (1208)
.+|.++.+-.|+.
T Consensus 346 ~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 346 FSLSTLNLLSNPF 358 (498)
T ss_pred ceeeeeehccCcc
Confidence 7788887776664
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=9.9e-15 Score=134.30 Aligned_cols=103 Identities=31% Similarity=0.389 Sum_probs=67.9
Q ss_pred cCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
.+.+++.|.||+|.++.+|+.|..|.+|+.|++++|+|+++|.+++.+++|+.|++..|. +..+|..|+.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 455666677777777777777777777777777777777777777777777777777665 5666777777777777777
Q ss_pred ccccccccccCCccCCCCCcCcCCC
Q 000962 669 EEMFWFKCSTLPAGIGKLTNLHNLH 693 (1208)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~ 693 (1208)
.+|++. -..+|..+..|+.|+.|.
T Consensus 110 tynnl~-e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 110 TYNNLN-ENSLPGNFFYMTTLRALY 133 (264)
T ss_pred cccccc-cccCCcchhHHHHHHHHH
Confidence 766553 234444444444444333
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=3.3e-11 Score=157.27 Aligned_cols=276 Identities=18% Similarity=0.196 Sum_probs=172.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC-CChHHHHHHHHHHcccCCCC-------------CCc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-YDLPRILKGMIEFHSKMEQS-------------TSS 262 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~-------------~~~ 262 (1208)
..+++.|+|++|.||||++.++... ++.++|+++... .+...+...++..+...... ..+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 4789999999999999999998752 236899999644 45555556666655321111 122
Q ss_pred HHHHHHHHHHHhc--CCceEEEEecCCCCCccChH-HHHHhhhCCCCCcEEEEecCChh-H--HhhhCCCCcEeCC----
Q 000962 263 ISLLETRLLEFLT--GQRFLLVLDDVWNEDYRKWE-PLQQLLKQGHKGSRVLVTSRTAR-V--SQIMGIRSPYLLE---- 332 (1208)
Q Consensus 263 ~~~l~~~l~~~L~--~kr~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~iivTtR~~~-v--~~~~~~~~~~~l~---- 332 (1208)
...+...+...+. +.+++|||||+...+..... .+...++....+.++|||||... . ..........++.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 2333343444443 67899999999654433333 34444444456678889999742 1 1111122345555
Q ss_pred CCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCC-hhHHHHHHhhcccccccCC
Q 000962 333 YLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDD-VNKWRKILSSDIWELEEGS 411 (1208)
Q Consensus 333 ~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~-~~~w~~~l~~~~~~~~~~~ 411 (1208)
+|+.+|+.++|.......- -.+.+.+|.+.|+|.|+++..++..+..... .... . +.+..
T Consensus 185 ~f~~~e~~~ll~~~~~~~~----------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~---~----~~~~~-- 245 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPI----------EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS---A----RRLAG-- 245 (903)
T ss_pred CCCHHHHHHHHHhccCCCC----------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh---h----HhhcC--
Confidence 8999999999987654321 1356779999999999999998877754321 1110 0 11110
Q ss_pred CCCCCCccchh-ccccCCChhHHHHHHHhccCCCCCccChHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHhccC
Q 000962 412 SNGPHILPPLK-LSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLGRSF 490 (1208)
Q Consensus 412 ~~~~~i~~~l~-~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sl 490 (1208)
.....+...+. -.++.||+..+..+...|+++ .++.+ +. ..+.. .+.+...+++|.+.++
T Consensus 246 ~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~-----~~l~~----------~~~~~~~L~~l~~~~l 306 (903)
T PRK04841 246 INASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LI-----VRVTG----------EENGQMRLEELERQGL 306 (903)
T ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HH-----HHHcC----------CCcHHHHHHHHHHCCC
Confidence 00122333332 247899999999999999997 23422 22 22221 1234678999999999
Q ss_pred cccccCCCcceEEEhhhHHHHHHHhc
Q 000962 491 FQSSNIDDKVKYQMHDLFHDLAQFVS 516 (1208)
Q Consensus 491 l~~~~~~~~~~~~mhdlv~~~a~~~~ 516 (1208)
+.....+...+|.+|++++++.+...
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHH
Confidence 76432233457899999999998765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=2.7e-12 Score=155.66 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=30.8
Q ss_pred CCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCC
Q 000962 776 NLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGML 833 (1208)
Q Consensus 776 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~ 833 (1208)
+...|+++++....+|..+ .++|+.|+|++|.+.... ...+++|++|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I----p~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~ 231 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI----PEQITTLILDNNELKSLP-ENLQGNIKTLYANSNQ 231 (754)
T ss_pred CceEEEeCCCCcCcCCccc----ccCCcEEEecCCCCCcCC-hhhccCCCEEECCCCc
Confidence 4556666665556666544 346777777777655433 1123466777766664
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=2.9e-14 Score=131.26 Aligned_cols=145 Identities=26% Similarity=0.345 Sum_probs=117.1
Q ss_pred CCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcc
Q 000962 560 NSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNL 639 (1208)
Q Consensus 560 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 639 (1208)
++++...|.++ .|.+..++| -+..+++|++|++++|+++++|.+++.++.||.|+++-|.+..+|..|+.++-|
T Consensus 31 ~~s~ITrLtLS-----HNKl~~vpp-nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLS-----HNKLTVVPP-NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcc-----cCceeecCC-cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 44444445454 344433333 467899999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCCccc-cccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCC
Q 000962 640 QTLKLIGCIWI-MELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLT 715 (1208)
Q Consensus 640 ~~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 715 (1208)
++|||++|.+. ..+|..|..++.|+-|+++.|.+ .-+|..++++++||.|.+..++.. ..+.+++.+++|+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf---e~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lr 176 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF---EILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLR 176 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc---ccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHH
Confidence 99999998754 56899999999999999999955 678999999999999988765432 2345555555555
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=5.7e-12 Score=152.88 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=39.7
Q ss_pred cccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccc
Q 000962 592 YLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM 671 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n 671 (1208)
+|++|+|++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|++|++++|. +..+|..+. ++|++|++++|
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC
Confidence 55556666655555555443 245556666665555555443 355556665554 334554432 35555555555
Q ss_pred cc
Q 000962 672 FW 673 (1208)
Q Consensus 672 ~~ 673 (1208)
.+
T Consensus 294 ~L 295 (754)
T PRK15370 294 SI 295 (754)
T ss_pred cc
Confidence 33
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=1.2e-09 Score=127.37 Aligned_cols=304 Identities=17% Similarity=0.122 Sum_probs=178.3
Q ss_pred cCCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
.+..++||+++++++...+...- .......+.|+|++|+|||++++.++++.......-..++|.+....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 34679999999999999885432 1123445789999999999999999984332221234567777766777888999
Q ss_pred HHHHcccCCC--CCCcHHHHHHHHHHHhc--CCceEEEEecCCCCC-ccChHHHHHhhh--CCCCCcE--EEEecCChhH
Q 000962 249 MIEFHSKMEQ--STSSISLLETRLLEFLT--GQRFLLVLDDVWNED-YRKWEPLQQLLK--QGHKGSR--VLVTSRTARV 319 (1208)
Q Consensus 249 i~~~~~~~~~--~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~-~~~~~~l~~~l~--~~~~gs~--iivTtR~~~v 319 (1208)
++.++..... ...+...+...+.+.++ ++..+||||+++.-. ....+.+...+. ....+++ ||.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 9988875221 23455667777777765 456899999996532 112233333322 1223333 5666665433
Q ss_pred HhhhC-------CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh--c--
Q 000962 320 SQIMG-------IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL--R-- 388 (1208)
Q Consensus 320 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l--~-- 388 (1208)
..... ....+.+.+++.++..+++..++...-... ......++.+++......|..+.|+.++-.+. .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~-~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPG-VVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccC-CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 22211 124678999999999999988763211000 01222334444444444566788877765432 1
Q ss_pred c-C--CChhHHHHHHhhcccccccCCCCCCCCccchhccccCCChhHHHHHHHhccC-CC-CCccChHHHHHH--HHHcc
Q 000962 389 K-Y--DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIF-PK-SYAFDKAEMVKF--WMAEA 461 (1208)
Q Consensus 389 ~-~--~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~f-p~-~~~i~~~~li~~--w~aeg 461 (1208)
. . -+.++...+++... .....-.+..||.+.|..+..++-. .. ...+...++... .+++.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 1 14455555554320 1123446789999988777655432 21 134555555533 23322
Q ss_pred ccccCCCCCCccHHHHHHHHHHHHHhccCcccc
Q 000962 462 LIQSRGGGRQEREEEIGIEYFDELLGRSFFQSS 494 (1208)
Q Consensus 462 ~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 494 (1208)
+-.. ..+ ......|+.+|...++|...
T Consensus 332 ~~~~-----~~~-~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYE-----PRT-HTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCC-----cCc-HHHHHHHHHHHHhcCCeEEE
Confidence 2111 111 34456799999999999864
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=5.8e-09 Score=120.23 Aligned_cols=302 Identities=15% Similarity=0.092 Sum_probs=172.2
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccc-ccc---ceeEEEEecCCCChHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-EHF---ESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~~~~~~~~~~~ 246 (1208)
+.++||++++++|..++...- .......+.|+|++|+|||++++.+++..... ... -..+||.+....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 478999999999999986522 11234578999999999999999999842111 110 135678887777778899
Q ss_pred HHHHHHccc---CCC-CCCcHHHHHHHHHHHhc--CCceEEEEecCCCCCccChHHHHHhhhC----CC--CCcEEEEec
Q 000962 247 KGMIEFHSK---MEQ-STSSISLLETRLLEFLT--GQRFLLVLDDVWNEDYRKWEPLQQLLKQ----GH--KGSRVLVTS 314 (1208)
Q Consensus 247 ~~i~~~~~~---~~~-~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~----~~--~gs~iivTt 314 (1208)
..+++++.. ... ...+..++...+.+.+. +++++||||+++.-....-+.+...+.. .. ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 999988842 211 12344555566666663 5678999999965421111122222221 11 223445555
Q ss_pred CChhHHhhh------C-CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHHHHhh
Q 000962 315 RTARVSQIM------G-IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIAGF 386 (1208)
Q Consensus 315 R~~~v~~~~------~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~~ 386 (1208)
........+ . ....+.+++++.++..+++..++....... ...++..+.+.+++....|.| .|+.++-.+
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~--~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDG--VLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCC--CCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 443322111 0 124688999999999999998874211100 022333345556677777887 444433222
Q ss_pred h----cc-C--CChhHHHHHHhhcccccccCCCCCCCCccchhccccCCChhHHHHHHHhccCC--CCCccChHHHHHHH
Q 000962 387 L----RK-Y--DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFP--KSYAFDKAEMVKFW 457 (1208)
Q Consensus 387 l----~~-~--~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp--~~~~i~~~~li~~w 457 (1208)
. .. . -+.+....+.+... .....-+...||.+.|..+..++..- .+..+...++...+
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 1 11 1 23344444433210 11223456789998887666554221 33446666666644
Q ss_pred H--HccccccCCCCCCccHHHHHHHHHHHHHhccCccccc
Q 000962 458 M--AEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSN 495 (1208)
Q Consensus 458 ~--aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 495 (1208)
- ++.+-..+ . .......++..|...++|....
T Consensus 318 ~~~~~~~~~~~-----~-~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 318 KEVCEDIGVDP-----L-TQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHhcCCCC-----C-cHHHHHHHHHHHHhcCCeEEEE
Confidence 2 22211111 1 1566788999999999998653
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.11 E-value=5.2e-09 Score=114.99 Aligned_cols=182 Identities=21% Similarity=0.196 Sum_probs=115.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH----
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF---- 273 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~---- 273 (1208)
..++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..++..++..... .+...+...+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 458899999999999999999984331 111 22343 333456778888888887654332 2222333333332
Q ss_pred -hcCCceEEEEecCCCCCccChHHHHHhhhC---CCCCcEEEEecCChhHHhhhC----------CCCcEeCCCCChhHH
Q 000962 274 -LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ---GHKGSRVLVTSRTARVSQIMG----------IRSPYLLEYLPEDQC 339 (1208)
Q Consensus 274 -L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~---~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~ 339 (1208)
..+++.+||+||+|..+...++.+...... ......|++|... .....+. ....+++++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 267889999999988765566666543321 1222345565543 2221111 124678999999999
Q ss_pred HHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 340 WSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 340 ~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
.+++...+...+... ...-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~---~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRD---APVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCC---CCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987765432211 112235788999999999999999988876
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=5.8e-11 Score=146.49 Aligned_cols=123 Identities=34% Similarity=0.387 Sum_probs=91.3
Q ss_pred CCcccEEecCCCC--Ccccccc-cccCCcccEEeecCC-CccccchhhccCCcccEEecCCCccccccchhcccccccce
Q 000962 590 LKYLRLLDLSSST--LTVLPDS-VEELKLLRYLDLSRT-EIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1208)
Q Consensus 590 l~~Lr~L~L~~~~--i~~lp~~-i~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 665 (1208)
.+.|++|-+.+|. +..++.. |..+++||+|||++| .+.++|++|++|-+|++|+++++. +..+|..+.+|.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhhe
Confidence 4468888888886 5666554 777999999999977 577999999999999999999877 7789999999999999
Q ss_pred eecccccccccccCCccCCCCCcCcCCCceEec-ccCCCChhhhcCCCCCC
Q 000962 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG-SKSGYRIEELKELPYLT 715 (1208)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~ 715 (1208)
|++..+.. ...+|.....|++|++|.+.... ..+...+.++.++..|+
T Consensus 623 Lnl~~~~~--l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 623 LNLEVTGR--LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred eccccccc--cccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 99987742 23345555668999999887643 22233444444444443
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.08 E-value=6.3e-09 Score=121.20 Aligned_cols=290 Identities=22% Similarity=0.222 Sum_probs=189.2
Q ss_pred HHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHHcccCCCC
Q 000962 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKMEQS 259 (1208)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~ 259 (1208)
.++++.|... ...+.+.|..++|.|||||+.+... +. ..=..+.|.+....- +.....+-++..++...+.
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 4555666544 3589999999999999999999975 22 223468999998665 4566667777766633222
Q ss_pred -------------CCcHHHHHHHHHHHhc--CCceEEEEecCCCCCccChHH-HHHhhhCCCCCcEEEEecCChhH---H
Q 000962 260 -------------TSSISLLETRLLEFLT--GQRFLLVLDDVWNEDYRKWEP-LQQLLKQGHKGSRVLVTSRTARV---S 320 (1208)
Q Consensus 260 -------------~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~~~~~~~-l~~~l~~~~~gs~iivTtR~~~v---~ 320 (1208)
..+...+.+.+...+. .++..+||||-.-........ +...+.....+-..|||||+..- +
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 2334445555555554 468999999986543333433 34444556678899999998632 2
Q ss_pred hhhCCCCcEeCC----CCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCChhHH
Q 000962 321 QIMGIRSPYLLE----YLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKW 396 (1208)
Q Consensus 321 ~~~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w 396 (1208)
+.--....+++. .++.+|+-++|....... -.+..++.+.+..+|-+-|+..++=.++.+.+.+.-
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~----------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~ 246 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP----------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQS 246 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC----------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH
Confidence 211112233333 578999999998776322 224567899999999999999998888743333332
Q ss_pred HHHHh---hcccccccCCCCCCCCccchhccccCCChhHHHHHHHhccCCCCCccChHHHHHHHHHccccccCCCCCCcc
Q 000962 397 RKILS---SDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQER 473 (1208)
Q Consensus 397 ~~~l~---~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~ 473 (1208)
...+. +..+++ ...=-++.||+++|..++-+|+++.= -..|+..-.
T Consensus 247 ~~~LsG~~~~l~dY------------L~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Lt--------------- 295 (894)
T COG2909 247 LRGLSGAASHLSDY------------LVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALT--------------- 295 (894)
T ss_pred hhhccchHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHh---------------
Confidence 22221 111111 11224688999999999999999641 123332211
Q ss_pred HHHHHHHHHHHHHhccCcccccCCCcceEEEhhhHHHHHHHhcCCC
Q 000962 474 EEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVSSPY 519 (1208)
Q Consensus 474 ~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~~~~~~ 519 (1208)
.++.|...+++|.+++++-..-++...+|+.|.++.||.+..-..+
T Consensus 296 g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 296 GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 1455778899999999997655566789999999999988765543
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.07 E-value=8.4e-10 Score=118.88 Aligned_cols=195 Identities=19% Similarity=0.231 Sum_probs=102.3
Q ss_pred cccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH---
Q 000962 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM--- 249 (1208)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i--- 249 (1208)
|+||+.++++|.+++..+. .+.+.|+|+.|+|||+|++++.+. .+..-..++|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~-~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESS-LRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhH-HHHHHHH
Confidence 7899999999999987643 568999999999999999999983 322222445555444432221 2222
Q ss_pred -----------HHHcccCCC------CCCcHHHHHHHHHHHh--cCCceEEEEecCCCCC------ccChHHHHHhhhC-
Q 000962 250 -----------IEFHSKMEQ------STSSISLLETRLLEFL--TGQRFLLVLDDVWNED------YRKWEPLQQLLKQ- 303 (1208)
Q Consensus 250 -----------~~~~~~~~~------~~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~~~------~~~~~~l~~~l~~- 303 (1208)
...+..... ...........+.+.+ .+++.+||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111100 1112222223333333 2456999999995433 0111233333332
Q ss_pred -CCCCcEEEEecCChhHHhh--------hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcC
Q 000962 304 -GHKGSRVLVTSRTARVSQI--------MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCK 374 (1208)
Q Consensus 304 -~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~ 374 (1208)
....-.+|++.....+... .+....+.+++++.+++++++...+..... . +.-++..++|...+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~-----~-~~~~~~~~~i~~~~g 225 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIK-----L-PFSDEDIEEIYSLTG 225 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------------HHHHHHHHHHHT
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhc-----c-cCCHHHHHHHHHHhC
Confidence 2233345555554444432 233345899999999999999987643311 1 122456689999999
Q ss_pred CChHHHHH
Q 000962 375 GLPLAVKA 382 (1208)
Q Consensus 375 g~PLai~~ 382 (1208)
|+|..|..
T Consensus 226 G~P~~l~~ 233 (234)
T PF01637_consen 226 GNPRYLQE 233 (234)
T ss_dssp T-HHHHHH
T ss_pred CCHHHHhc
Confidence 99998764
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.97 E-value=5.3e-11 Score=135.05 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=16.5
Q ss_pred CceeEEEEeCcCCCCcc------ccCCCCCccEEEEeCCC
Q 000962 800 QNLVSLTLKGCTNCRIL------SLGQLSSLRVLNIKGML 833 (1208)
Q Consensus 800 ~~L~~L~L~~~~~~~~~------~l~~l~~L~~L~L~~~~ 833 (1208)
+.|++|++++|.+.... .+..+++|+++++++|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 45555555555543111 23334555555555554
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.96 E-value=3.4e-09 Score=119.02 Aligned_cols=278 Identities=15% Similarity=0.172 Sum_probs=146.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..|+|++..++.+..++..... .......+.|+|++|+||||+|+.+++. ....+ .++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 5699999999999877754210 1233557889999999999999999984 33222 112211 111112222222
Q ss_pred HHcccCCCC-CCcH----HHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHhhh--
Q 000962 251 EFHSKMEQS-TSSI----SLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIM-- 323 (1208)
Q Consensus 251 ~~~~~~~~~-~~~~----~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~-- 323 (1208)
..+....-- -+++ ....+.+...+.+.+..+|+|+..+.. .+...+ .+.+-|..|||...+....
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHH
Confidence 222111000 0111 111222333344444445554442211 000011 1234466677754433221
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCChhHHHHHHhhc
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKILSSD 403 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~ 403 (1208)
.....+++++++.++..+++.+.+...+.. -..+.+..|++.|+|.|-.+..+...+ ..|.......
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~-------~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~ 236 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVE-------IDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG 236 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCC-------cCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC
Confidence 123468999999999999999887654321 224678899999999995444444332 1222111000
Q ss_pred ccccccCCCCCCCCccchhccccCCChhHHHHHH-HhccCCCCCccChHHHHHHHHHccccccCCCCCCccHHHHHHHHH
Q 000962 404 IWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFS-LCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYF 482 (1208)
Q Consensus 404 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~ 482 (1208)
. ... ..-......+...|..|++..+..+. ....|+.+ .+..+.+... +... .+.+++.+
T Consensus 237 ~--I~~--~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~------lg~~--------~~~~~~~~ 297 (328)
T PRK00080 237 V--ITK--EIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAA------LGEE--------RDTIEDVY 297 (328)
T ss_pred C--CCH--HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHH------HCCC--------cchHHHHh
Confidence 0 000 00011223456778889888777775 77777765 3554444322 1111 33455556
Q ss_pred H-HHHhccCccccc
Q 000962 483 D-ELLGRSFFQSSN 495 (1208)
Q Consensus 483 ~-~L~~~sll~~~~ 495 (1208)
+ .|++.+|++...
T Consensus 298 e~~Li~~~li~~~~ 311 (328)
T PRK00080 298 EPYLIQQGFIQRTP 311 (328)
T ss_pred hHHHHHcCCcccCC
Confidence 6 899999997554
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=2.4e-10 Score=129.59 Aligned_cols=238 Identities=23% Similarity=0.152 Sum_probs=109.4
Q ss_pred hccCCcccEEecCCCCCc-----ccccccccCCcccEEeecCCCccc-------cchhhccCCcccEEecCCCccccccc
Q 000962 587 FHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIKV-------LPNSICNLYNLQTLKLIGCIWIMELP 654 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~~~~lp 654 (1208)
|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+....+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344444555555555542 234444445555555555554431 23344455555555555555433333
Q ss_pred hhcccccc---cceeeccccccccc--ccCCccCCCC-CcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCcccccc
Q 000962 655 KDLANLVK---LRNLELEEMFWFKC--STLPAGIGKL-TNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVN 728 (1208)
Q Consensus 655 ~~i~~L~~---L~~L~l~~n~~~~~--~~lp~~i~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~ 728 (1208)
..+..+.+ |++|++++|.+... ..+...+..+ ++|+.|++.++... +.....+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~~~------------------- 158 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE-GASCEALA------------------- 158 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC-chHHHHHH-------------------
Confidence 33433333 55555555543210 0111223333 45555555543221 11111100
Q ss_pred ccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCC-----CCcccccCCCCcee
Q 000962 729 GGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNS-----LPQWMRDGRLQNLV 803 (1208)
Q Consensus 729 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~ 803 (1208)
..+..+.+|+.|++++|.... .....+...+...++|+.|+++++.... ++..+ ..+++|+
T Consensus 159 ---~~~~~~~~L~~L~l~~n~l~~---------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~--~~~~~L~ 224 (319)
T cd00116 159 ---KALRANRDLKELNLANNGIGD---------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL--ASLKSLE 224 (319)
T ss_pred ---HHHHhCCCcCEEECcCCCCch---------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh--cccCCCC
Confidence 011222344555555443321 0111223334444566777766544321 12222 3467777
Q ss_pred EEEEeCcCCCCcc--cc-----CCCCCccEEEEeCCCCce----e-cCCCCCCccccccccCCCCCC
Q 000962 804 SLTLKGCTNCRIL--SL-----GQLSSLRVLNIKGMLELE----K-WPNDEDCRFLGRLKISNCPRL 858 (1208)
Q Consensus 804 ~L~L~~~~~~~~~--~l-----~~l~~L~~L~L~~~~~~~----~-~~~~~~~~~L~~L~l~~~~~l 858 (1208)
.|++++|.+.... .+ ...+.|++|++++|.... . ......++.|+.+++++|...
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 7777777665421 11 124678888888775431 0 111233467777777777654
No 33
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=8.9e-09 Score=104.00 Aligned_cols=144 Identities=24% Similarity=0.253 Sum_probs=88.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccc----cceeEEEEecCCCChH---HHHHHHHHHcccCCCCCCcHHHHHHHHH
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREH----FESRMWVCVTVDYDLP---RILKGMIEFHSKMEQSTSSISLLETRLL 271 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~l~~~l~ 271 (1208)
+++.|+|.+|+||||+++.++.+...... +...+|+......... .+...+..+..... .........+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHHH
Confidence 47899999999999999999985333322 4566677766544332 23333333322211 11111111111
Q ss_pred HHhcCCceEEEEecCCCCCcc-------ChHH-HHHhhhC-CCCCcEEEEecCChhH---HhhhCCCCcEeCCCCChhHH
Q 000962 272 EFLTGQRFLLVLDDVWNEDYR-------KWEP-LQQLLKQ-GHKGSRVLVTSRTARV---SQIMGIRSPYLLEYLPEDQC 339 (1208)
Q Consensus 272 ~~L~~kr~LlVlDdvw~~~~~-------~~~~-l~~~l~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 339 (1208)
-+.++++||+|+++..... .+.. +...++. ..++.++|||+|.... .........+++++|++++.
T Consensus 78 --~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 78 --EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred --HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2578999999999543221 1222 3333433 3578999999998765 33344456899999999999
Q ss_pred HHHHHHHh
Q 000962 340 WSIFKKIA 347 (1208)
Q Consensus 340 ~~lf~~~a 347 (1208)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99987653
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.91 E-value=2.5e-08 Score=111.54 Aligned_cols=270 Identities=17% Similarity=0.147 Sum_probs=148.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..|||++..++++..++..... .......+.++|++|+|||+||+.+++. ....+. .+......... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~~---~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNLK---ITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCEE---EeccchhcCch-hHHHHH
Confidence 4689999999999888864321 1123456789999999999999999983 332221 12211111111 122222
Q ss_pred HHcccCCCC-CCcH----HHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHhhh--
Q 000962 251 EFHSKMEQS-TSSI----SLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIM-- 323 (1208)
Q Consensus 251 ~~~~~~~~~-~~~~----~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~-- 323 (1208)
..+....-- -++. ...++.+...+.+.+..+|+|+.+... .| ...+ .+.+-|.+||+...+....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHHHh
Confidence 222211100 0111 112334455555556666666653321 11 1111 2245566677765443321
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhcc------C--CChhH
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRK------Y--DDVNK 395 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~------~--~~~~~ 395 (1208)
.....+++++++.++..+++.+.+...+. .-..+....|++.|+|.|-.+..++..+.. . -+.+.
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-------~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~ 221 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-------EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDI 221 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-------CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 12346789999999999999988864322 112466788999999999665544443210 0 01111
Q ss_pred HHHHHhhcccccccCCCCCCCCccchhccccCCChhHHHHHH-HhccCCCCCccChHHHHHHHHHccccccCCCCCCccH
Q 000962 396 WRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFS-LCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQERE 474 (1208)
Q Consensus 396 w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~ 474 (1208)
...+ ...+...|..++++.+..+. ..+.++.+ .+..+.+.... |- +
T Consensus 222 v~~~------------------l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~-----------~ 268 (305)
T TIGR00635 222 ALKA------------------LEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE-----------D 268 (305)
T ss_pred HHHH------------------HHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC-----------C
Confidence 1111 11256678899988877666 55767543 34433333221 10 1
Q ss_pred HHHHHHHHH-HHHhccCccccc
Q 000962 475 EEIGIEYFD-ELLGRSFFQSSN 495 (1208)
Q Consensus 475 ~~~~~~~~~-~L~~~sll~~~~ 495 (1208)
...++..++ .|++++||....
T Consensus 269 ~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 269 ADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred cchHHHhhhHHHHHcCCcccCC
Confidence 345667777 699999997544
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.82 E-value=4e-08 Score=105.07 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=108.1
Q ss_pred cccCCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000962 167 FIDTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1208)
+++..+++|-+..+.++++ . +.+.....||++|+||||||+.++. .....|. .++-..+-..-+
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdl 89 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDL 89 (436)
T ss_pred hcChHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHH
Confidence 4455566666555555443 2 3477788999999999999999997 4444443 333333322333
Q ss_pred HHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE--ecCChhHH---h
Q 000962 247 KGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV--TSRTARVS---Q 321 (1208)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~---~ 321 (1208)
+++++... +....+++.+|++|.|..-+..+-+.+...+ ..|.-|+| ||.++... .
T Consensus 90 r~i~e~a~----------------~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 90 REIIEEAR----------------KNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHHHH----------------HHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHH
Confidence 33332211 1223589999999999877665555555444 46776666 78876431 1
Q ss_pred hhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHH
Q 000962 322 IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLA 379 (1208)
Q Consensus 322 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 379 (1208)
......++++++|+.++-.+++.+.+......-......-.+++-.-+++.++|---+
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 2234578999999999999999884432221110001111234566778888876643
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.75 E-value=1.1e-10 Score=123.83 Aligned_cols=158 Identities=16% Similarity=0.297 Sum_probs=92.6
Q ss_pred CCCCCCEEeecCCCCCCcCCCC---CCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc---
Q 000962 991 ETSSLNFLILSKISNLDSFPRW---PNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--- 1064 (1208)
Q Consensus 991 ~l~~L~~L~ls~n~~~~~~~~~---~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--- 1064 (1208)
+|..|+.|+.++|...+..+-+ .+.++|+.|.+++|+.++...-...-.+++.|+.+++.+|.....-.-..+.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 3456666666666554433322 4556667777776665554432223345666777776666433222101111
Q ss_pred CCCCEEEEecCCCCccc-----CCcCCCCCCCCCCceeecCCCCCCCCCCC--CCCCccceEeccCChhhHHhhhcCCCC
Q 000962 1065 TSLKCLIIASCSGLKSL-----GPRGTLKSLNSLKDFYIEDCPLLQSFPED--GLPENLQHLVIQNCPLLTQQCRDGEAE 1137 (1208)
Q Consensus 1065 ~~L~~L~l~~c~~l~~l-----p~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~~L~~~~~~~~~~ 1137 (1208)
+.|+.|.++.|..+++. .. .-..+..|+.+.+++||.++.--.+ ...++|+.+++.+|..+.+--
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~--~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~------ 443 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSS--SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA------ 443 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhh--ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh------
Confidence 56777777777666554 22 3345667888888888887654332 344789999999998876622
Q ss_pred CCCCCccccCCceEECceecc
Q 000962 1138 GPEWPKIKDIPDLEIDFICNR 1158 (1208)
Q Consensus 1138 g~~~~~i~~l~~l~i~~~~~~ 1158 (1208)
+-+--.|+|++.+..-..+
T Consensus 444 --i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 444 --ISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred --hHHHHhhCccceehhhccC
Confidence 2223477888887765443
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.75 E-value=1.9e-07 Score=98.57 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=100.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
.+.+.|+|..|+|||+||+.+++. .......+.|+++.... ... ..+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~---------------------~~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS---------------------PAVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh---------------------HHHHhhcc-c
Confidence 357899999999999999999984 33233455677653110 000 01111122 2
Q ss_pred ceEEEEecCCCCC-ccChH-HHHHhhhCC-CCCcEEEE-ecCC---------hhHHhhhCCCCcEeCCCCChhHHHHHHH
Q 000962 278 RFLLVLDDVWNED-YRKWE-PLQQLLKQG-HKGSRVLV-TSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1208)
Q Consensus 278 r~LlVlDdvw~~~-~~~~~-~l~~~l~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1208)
.-+||+||+|... ...|+ .+...+... ..|..+|| |++. ++++..+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3599999998642 23454 344444332 23555654 4443 4667777777899999999999999999
Q ss_pred HHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
+.++..+-. --+++..-|++++.|..-++..+-..|
T Consensus 172 ~~a~~~~l~-------l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIE-------LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCC-------CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 998754321 125778899999988776665554444
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.69 E-value=4.9e-07 Score=106.41 Aligned_cols=214 Identities=13% Similarity=0.095 Sum_probs=131.6
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc---ccccc--eeEEEEecCCCChHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV---REHFE--SRMWVCVTVDYDLPR 244 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~~~~~~~~ 244 (1208)
++.++|||+++++|...|...-. +.....++.|+|++|+|||+.++.|.+.... +...+ .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 46788999999999888865321 1233467889999999999999999874211 11122 246777776677888
Q ss_pred HHHHHHHHcccCCCC-CCcHHHHHHHHHHHhc---CCceEEEEecCCCCCccChHHHHHhhhC-CCCCcEEEE--ecCC-
Q 000962 245 ILKGMIEFHSKMEQS-TSSISLLETRLLEFLT---GQRFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLV--TSRT- 316 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~L~---~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiv--TtR~- 316 (1208)
++..|.+++...... .........++...+. +...+||||+|+.-....-+.+...+.+ ...+++|+| +|..
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 888888888543322 3333445555555542 2235899999954322122334444432 234566555 3332
Q ss_pred -------hhHHhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhc
Q 000962 317 -------ARVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLR 388 (1208)
Q Consensus 317 -------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~ 388 (1208)
+.+...++ ...+...+++.++-.+++..++...... .....++-+|+.++..-|-.-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gV---LdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEI---IDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 22222222 2346779999999999999988643211 13344555566666666667788877766654
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.4e-08 Score=118.59 Aligned_cols=107 Identities=37% Similarity=0.464 Sum_probs=92.5
Q ss_pred hccCCcccEEecCCCCCcccccccccCC-cccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccce
Q 000962 587 FHQLKYLRLLDLSSSTLTVLPDSVEELK-LLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 665 (1208)
...++.++.|++.+|.++.+|...+.+. +|++|++++|++..+|..++.+++|+.|++++|. +..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhh
Confidence 3455889999999999999999888885 9999999999999999899999999999999998 7888887779999999
Q ss_pred eecccccccccccCCccCCCCCcCcCCCceEe
Q 000962 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
|++++|.+ ..+|..++.+..|++|.+.++
T Consensus 191 L~ls~N~i---~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNKI---SDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCcc---ccCchhhhhhhhhhhhhhcCC
Confidence 99999955 566776666777888887764
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.66 E-value=1.3e-09 Score=120.14 Aligned_cols=174 Identities=25% Similarity=0.341 Sum_probs=107.1
Q ss_pred hccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhccccccccee
Q 000962 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 666 (1208)
++.|..|..|.|..|.+..+|..++++..|.||+|+.|++..+|..++.|+ |+.|-+++|+ ++.+|..++.+..|.+|
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHh
Confidence 344555555556666666666666666666666666666666666555554 5556555554 55556666655566666
Q ss_pred ecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEee
Q 000962 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1208)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 746 (1208)
|.+.|.+ ..+|..++.+.+|+.|.+..+.
T Consensus 172 d~s~nei---~slpsql~~l~slr~l~vrRn~------------------------------------------------ 200 (722)
T KOG0532|consen 172 DVSKNEI---QSLPSQLGYLTSLRDLNVRRNH------------------------------------------------ 200 (722)
T ss_pred hhhhhhh---hhchHHhhhHHHHHHHHHhhhh------------------------------------------------
Confidence 6665532 4455555555555555443321
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc----ccCCCC
Q 000962 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL----SLGQLS 822 (1208)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~----~l~~l~ 822 (1208)
. ..+++.+. .-.|.+|++++|....+|..| ..+..|++|.|.+|.+.... .-|...
T Consensus 201 ---l--------------~~lp~El~-~LpLi~lDfScNkis~iPv~f--r~m~~Lq~l~LenNPLqSPPAqIC~kGkVH 260 (722)
T KOG0532|consen 201 ---L--------------EDLPEELC-SLPLIRLDFSCNKISYLPVDF--RKMRHLQVLQLENNPLQSPPAQICEKGKVH 260 (722)
T ss_pred ---h--------------hhCCHHHh-CCceeeeecccCceeecchhh--hhhhhheeeeeccCCCCCChHHHHhcccee
Confidence 1 11223333 226888999999999999888 56999999999999888765 344555
Q ss_pred CccEEEEeCCC
Q 000962 823 SLRVLNIKGML 833 (1208)
Q Consensus 823 ~L~~L~L~~~~ 833 (1208)
=-|+|+..-|.
T Consensus 261 IFKyL~~qA~q 271 (722)
T KOG0532|consen 261 IFKYLSTQACQ 271 (722)
T ss_pred eeeeecchhcc
Confidence 56777776663
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=2.2e-09 Score=118.34 Aligned_cols=140 Identities=26% Similarity=0.343 Sum_probs=97.2
Q ss_pred EEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeec
Q 000962 543 VSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLS 622 (1208)
Q Consensus 543 lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~ 622 (1208)
..++.|.+..++.. +..+-.|.++++. .|.+ ..++..+.++..|.+|||+.|.++.+|..++.|+ |+.|-++
T Consensus 80 aDlsrNR~~elp~~-~~~f~~Le~liLy-----~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 80 ADLSRNRFSELPEE-ACAFVSLESLILY-----HNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhccccccccCchH-HHHHHHHHHHHHH-----hccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 34444555444321 3344445555554 2222 2345567788888888888888888888888775 8888888
Q ss_pred CCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCce
Q 000962 623 RTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVF 695 (1208)
Q Consensus 623 ~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~ 695 (1208)
+|+++.+|..++.+..|..||.+.|. +..+|..++.|.+|+.|.+..|.+ ..+|+.+..| .|..|+++
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l---~~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHL---EDLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhh---hhCCHHHhCC-ceeeeecc
Confidence 88888888888888888888888887 778888888888888888888854 5567665533 34444443
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.62 E-value=4.3e-07 Score=105.29 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=105.7
Q ss_pred ccccchhhHHH---HHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 172 NVFGRDDDKER---ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 172 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
.+||++..+.. +..++.... ...+.++|++|+||||+|+.+++. ....| +.++.......-+++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~------~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGR------LSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCC------CceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHH
Confidence 57787776555 666665433 557888999999999999999983 33333 333222111111122
Q ss_pred HHHHcccCCCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE--ecCChhHH---hh
Q 000962 249 MIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV--TSRTARVS---QI 322 (1208)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~---~~ 322 (1208)
++ +..... ..+++.+|++|++|.......+.+...+. .|..++| ||.+.... ..
T Consensus 80 ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 22 111111 14678999999998765555566665554 2444444 45543211 11
Q ss_pred hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHh
Q 000962 323 MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1208)
Q Consensus 323 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 385 (1208)
......+++.+++.++.+.++.+.+..... . ...-..++...|++.|+|.+..+..+..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~---~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKER-G---LVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhc-C---CCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122367899999999999999886533111 0 0012246677899999999976654443
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.61 E-value=7.4e-07 Score=95.02 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=104.4
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHccc
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK 255 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 255 (1208)
.+..++.+.+++... ....+.|+|..|+|||+||+.+++. ........++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH------
Confidence 445667777765432 2568899999999999999999983 322333455665543211 00
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCcc-C-hHHHHHhhhC-CCCCcEEEEecCChh---------HHhhh
Q 000962 256 MEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR-K-WEPLQQLLKQ-GHKGSRVLVTSRTAR---------VSQIM 323 (1208)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~-~-~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~ 323 (1208)
. .+.+.+.+ .-+||+||++..... . .+.+...+.. ...+.+||+||+... +...+
T Consensus 82 --------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0 11111222 348999999654322 2 3445554432 123457899887532 22233
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
.....+++.++++++...++...+-..+. .--.++.+.+++.+.|.|..+.-+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-------~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-------QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33467899999999999998876533221 1124667788888999998777665443
No 44
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=1.6e-07 Score=101.61 Aligned_cols=299 Identities=17% Similarity=0.148 Sum_probs=188.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..+-+.++|.|||||||++-.+.. ++..|. .+.+|....-.+...+.-.....++...... +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 367899999999999999998886 566675 4455555555555555555555455443221 222334455557
Q ss_pred CCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeCCCCCh-hHHHHHHHHHhccCCCCC
Q 000962 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPE-DQCWSIFKKIAFNQGNFS 354 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~ 354 (1208)
++|.++|+||...-- +.-..+...+-.+...-+|+.|+|..-. +.....+.+..|+. +++.++|...+......-
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 899999999982210 1122233344445566679999997433 23445677888876 489999987774322110
Q ss_pred ccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCChhHHHHHHhhcccccccCCC----CCCCCccchhccccCCCh
Q 000962 355 SRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKILSSDIWELEEGSS----NGPHILPPLKLSYDHLPP 430 (1208)
Q Consensus 355 ~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~----~~~~i~~~l~~sy~~L~~ 430 (1208)
.........+.+|.++..|.|++|..+++..++- ...+-...+......+..... .....++.+.+||.-|..
T Consensus 163 --~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 163 --WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred --eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 0122335678899999999999999999988763 334444434322222221111 124578899999999999
Q ss_pred hHHHHHHHhccCCCCCccChHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHhccCcccccCCCcceEEEhhhHHH
Q 000962 431 FLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHD 510 (1208)
Q Consensus 431 ~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~ 510 (1208)
-.+--|..++.|...|... ...|++-|=.-.. +.-.....+..+++++++...+......|+.-+-++.
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~-------~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~ 308 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVDV-------PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRR 308 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCcccc-------chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Confidence 9999999999998776554 3445554322100 1233455577888999887665444556777777777
Q ss_pred HHHHhcCCC
Q 000962 511 LAQFVSSPY 519 (1208)
Q Consensus 511 ~a~~~~~~~ 519 (1208)
|+.....+.
T Consensus 309 YalaeL~r~ 317 (414)
T COG3903 309 YALAELHRS 317 (414)
T ss_pred HHHHHHHhh
Confidence 776655443
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=2.3e-08 Score=98.56 Aligned_cols=107 Identities=35% Similarity=0.327 Sum_probs=47.5
Q ss_pred cCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhh-ccCCcccEEecCCCccccccc--hhcccccccce
Q 000962 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSI-CNLYNLQTLKLIGCIWIMELP--KDLANLVKLRN 665 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~ 665 (1208)
.+.+|++|||++|.|+.++ .+..+++|+.|++++|.|+.++..+ ..+++|++|++++|.+ ..+- ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcce
Confidence 4677888888888888775 4777888888888888888886555 4688888888888763 2221 34567888888
Q ss_pred eecccccccccccC-CccCCCCCcCcCCCceEe
Q 000962 666 LELEEMFWFKCSTL-PAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 666 L~l~~n~~~~~~~l-p~~i~~l~~L~~L~l~~~ 697 (1208)
|++.+|.+...... ...+..+++|+.||...+
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 88888866432111 113456777777776654
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=2.2e-08 Score=98.68 Aligned_cols=108 Identities=26% Similarity=0.286 Sum_probs=42.5
Q ss_pred ccCCcccEEecCCCCCcccccccc-cCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhc-ccccccce
Q 000962 588 HQLKYLRLLDLSSSTLTVLPDSVE-ELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDL-ANLVKLRN 665 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~ 665 (1208)
.+...++.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++|. +..++..+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 34557899999999999875 466 6899999999999999985 58889999999999998 56676555 46999999
Q ss_pred eecccccccccccCCccCCCCCcCcCCCceEecc
Q 000962 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGS 699 (1208)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 699 (1208)
|++++|.+..+..+ ..+..+++|+.|++.+|+.
T Consensus 93 L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 93 LYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EE-TTS---SCCCC-GGGGG-TT--EEE-TT-GG
T ss_pred EECcCCcCCChHHh-HHHHcCCCcceeeccCCcc
Confidence 99999988776554 4566788888888877643
No 47
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.51 E-value=3e-07 Score=88.41 Aligned_cols=117 Identities=22% Similarity=0.263 Sum_probs=80.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhccccccc---ccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVRE---HFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L 274 (1208)
.+++.|+|.+|+|||++++.+.++..... .-..++|+.+....+...+...+++.++.......+...+.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 56899999999999999999998421110 034567999998889999999999999877666566777778888887
Q ss_pred cCCc-eEEEEecCCCC-CccChHHHHHhhhCCCCCcEEEEecCC
Q 000962 275 TGQR-FLLVLDDVWNE-DYRKWEPLQQLLKQGHKGSRVLVTSRT 316 (1208)
Q Consensus 275 ~~kr-~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1208)
...+ .+||+||+..- +...++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6554 59999999543 3233334433332 566777777664
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.50 E-value=7.7e-07 Score=89.26 Aligned_cols=181 Identities=20% Similarity=0.258 Sum_probs=100.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
++|||.+.-++.+.-++.... .......-+-+||++|+||||||.-+++ .....|. +++... ..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-IE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh-hh---------
Confidence 579999888887655543211 0123467889999999999999999998 4555553 222211 00
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC--------CC-----------cEEE
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH--------KG-----------SRVL 311 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~--------~g-----------s~ii 311 (1208)
...++...+.+ + +++-+|++|.+..-+...-+.+..++.++. .+ +-|=
T Consensus 88 -----------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 88 -----------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred -----------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 11122222211 2 245688889997766555566666665421 11 2233
Q ss_pred EecCChhHHhhhCCC--CcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 312 VTSRTARVSQIMGIR--SPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 312 vTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
.|||...+...+... -..+++..+.+|-.++..+.+..-+. +-.++.+.+|++++.|-|--..-+-+.+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-------~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-------EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--------EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-------CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 588875554443332 24579999999999999887754332 2346789999999999996554444443
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.49 E-value=5.6e-07 Score=99.44 Aligned_cols=53 Identities=25% Similarity=0.483 Sum_probs=27.0
Q ss_pred cccccEEEecCCCCCCCCCCCC-CCCeEEEeccCCCCCCCCCccccccceeeecCC
Q 000962 926 FQTLLEMKAINCPKLRGLPQIF-APQKLEISGCDLLSTLPNSEFSQRLQLLALEGC 980 (1208)
Q Consensus 926 ~~~L~~L~l~~c~~L~~l~~~~-~l~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~ 980 (1208)
+..+..|.+++| .++++|..+ ++++|.+++|..+..+|.. ..++|++|++++|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCch-hhhhhhheEccCc
Confidence 355666666666 555555443 3555555555555444432 1234444444444
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=1.8e-07 Score=114.00 Aligned_cols=103 Identities=23% Similarity=0.388 Sum_probs=81.4
Q ss_pred cccEEecCCCCCc-ccccccccCCcccEEeecCCCcc-ccchhhccCCcccEEecCCCccccccchhcccccccceeecc
Q 000962 592 YLRLLDLSSSTLT-VLPDSVEELKLLRYLDLSRTEIK-VLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 669 (1208)
.++.|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|+|++|.+.+.+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778888888887 78888888888888888888887 788888888888888888888888888888888888888888
Q ss_pred cccccccccCCccCCCC-CcCcCCCceE
Q 000962 670 EMFWFKCSTLPAGIGKL-TNLHNLHVFR 696 (1208)
Q Consensus 670 ~n~~~~~~~lp~~i~~l-~~L~~L~l~~ 696 (1208)
+|.+. +.+|..++.+ .++..+++.+
T Consensus 499 ~N~l~--g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 499 GNSLS--GRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCccc--ccCChHHhhccccCceEEecC
Confidence 88765 5677776543 3444454444
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=3.1e-08 Score=100.31 Aligned_cols=102 Identities=30% Similarity=0.322 Sum_probs=60.8
Q ss_pred CCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecc
Q 000962 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1208)
Q Consensus 590 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 669 (1208)
.+.|+.||||+|.|+.+.++..-++.+|.|++|+|.|..+-. +..|++|+.|||++|. +.++-.+-.+|-+.+.|.|+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 345666666666666666666666666666666666665533 6666666666666665 33343333455566666666
Q ss_pred cccccccccCCccCCCCCcCcCCCceEe
Q 000962 670 EMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 670 ~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
+|.+..+ .++++|-+|..|++.++
T Consensus 361 ~N~iE~L----SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 361 QNKIETL----SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred hhhHhhh----hhhHhhhhheecccccc
Confidence 6644333 45556666666666554
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.9e-08 Score=106.46 Aligned_cols=189 Identities=21% Similarity=0.100 Sum_probs=108.9
Q ss_pred cccccccCCcccEEeecCCCccccch--hhccCCcccEEecCCCcccc--ccchhcccccccceeecccccccccccCCc
Q 000962 606 LPDSVEELKLLRYLDLSRTEIKVLPN--SICNLYNLQTLKLIGCIWIM--ELPKDLANLVKLRNLELEEMFWFKCSTLPA 681 (1208)
Q Consensus 606 lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~ 681 (1208)
+-..=.++.+||...|.++.+...+. ....|++++.|||+.|-+.. .+-.-...|++|+.|+++.|.+.....- .
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~ 191 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-N 191 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-c
Confidence 33334678889999999998887774 67889999999999875332 2223346788999999998865321110 0
Q ss_pred cCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCc
Q 000962 682 GIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVS 761 (1208)
Q Consensus 682 ~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~ 761 (1208)
.-..+++|+.|.+..|+.. .......+..+++|+.|.|..|.......
T Consensus 192 ~~~~l~~lK~L~l~~CGls--------------------------~k~V~~~~~~fPsl~~L~L~~N~~~~~~~------ 239 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLS--------------------------WKDVQWILLTFPSLEVLYLEANEIILIKA------ 239 (505)
T ss_pred chhhhhhhheEEeccCCCC--------------------------HHHHHHHHHhCCcHHHhhhhcccccceec------
Confidence 0123445555555444221 11112223344566666666663211100
Q ss_pred cchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--c------cCCCCCccEEEEeCCC
Q 000962 762 GDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--S------LGQLSSLRVLNIKGML 833 (1208)
Q Consensus 762 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~------l~~l~~L~~L~L~~~~ 833 (1208)
. ....+..|+.|+|+++..-.++.....+.++.|..|.++.|.+.+.- . ...+|+|++|++..|+
T Consensus 240 -~------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 240 -T------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred -c------hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 0 11123466777777665555553322356777777777777655433 1 2457777777777775
Q ss_pred C
Q 000962 834 E 834 (1208)
Q Consensus 834 ~ 834 (1208)
.
T Consensus 313 I 313 (505)
T KOG3207|consen 313 I 313 (505)
T ss_pred c
Confidence 4
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.6e-06 Score=85.68 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=74.1
Q ss_pred ccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHc
Q 000962 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFH 253 (1208)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1208)
+|++..++.+...+.... .+.+.|+|.+|+||||+|+.+++... ..-..++++.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~------~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP------PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 478888999988886533 46889999999999999999998432 222345677665443322211111000
Q ss_pred ccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCC------CCCcEEEEecCCh
Q 000962 254 SKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG------HKGSRVLVTSRTA 317 (1208)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTtR~~ 317 (1208)
............++.++|+||++.........+...+... ..+.+||+||...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111222456789999999753222233444444332 3577888888864
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=5.9e-06 Score=92.26 Aligned_cols=179 Identities=15% Similarity=0.192 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccc----ccccccceeEEEEe-cCCCChHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEE----RVREHFESRMWVCV-TVDYDLPRI 245 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-~~~~~~~~~ 245 (1208)
..++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.++... ....|+|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357898888999999987543 35678899999999999999998731 12345565555442 22222222
Q ss_pred HHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHH-hh-h
Q 000962 246 LKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVS-QI-M 323 (1208)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~-~ 323 (1208)
.+++.+.+... -..+++=++|+|++...+...+..+...+.....++.+|++|.+.+.. .. .
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222111 012456677778776666678899999998877889998888765321 11 1
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHH
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 382 (1208)
.....+++.++++++....+.....+. ..+.++.++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYNDI-----------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcCC-----------CHHHHHHHHHHcCCCHHHHHH
Confidence 223688999999999888776543211 124467889999998875543
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.43 E-value=4.2e-09 Score=112.10 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=113.2
Q ss_pred cccceeeecCCCCCc--cc-cCCCCCCCCCEEeecCCCCCCcCCCC---CCCCCcceEEEcCCCCCcCCcccCCCCCCCC
Q 000962 970 QRLQLLALEGCPDGT--LV-RAIPETSSLNFLILSKISNLDSFPRW---PNLPGLKALYIRDCKDLVSLSGEGALQSLTS 1043 (1208)
Q Consensus 970 ~~L~~L~L~~~~~~~--~~-~~l~~l~~L~~L~ls~n~~~~~~~~~---~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~ 1043 (1208)
..++.+.+.+|.... .. ..-..+.-+..+++.+|..++....| ..+..|+.|..++|.+++..+....-++.++
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 346666666775221 11 11234456677778888776655543 5678899999999998777665555677899
Q ss_pred cCeEeecCCCCCccCCCCCCc---CCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCC-----CC-CCCC
Q 000962 1044 LNLLSIRGCPKLETLPDEGLP---TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFP-----ED-GLPE 1114 (1208)
Q Consensus 1044 L~~L~l~~~~~l~~lp~~~~~---~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp-----~~-~~~~ 1114 (1208)
|+.|.+++|..++..-...+. ..|+.+++..|.....-.....-.+++.|++|.+++|..++... .. --..
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 999999999876554221121 68999999998866543111134578999999999999888762 11 1236
Q ss_pred ccceEeccCChhhHHhhhc
Q 000962 1115 NLQHLVIQNCPLLTQQCRD 1133 (1208)
Q Consensus 1115 sL~~L~l~~c~~L~~~~~~ 1133 (1208)
.|+.+.+++||.+++....
T Consensus 402 ~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLE 420 (483)
T ss_pred ccceeeecCCCCchHHHHH
Confidence 7999999999998876543
No 56
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-05 Score=89.26 Aligned_cols=207 Identities=16% Similarity=0.193 Sum_probs=134.8
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc-e-eEEEEecCCCChHHHHHHH
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-S-RMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~~~~~~~~~~~~~~i 249 (1208)
.+.+|+++++++...|...-. +....-+.|+|..|+|||+.++.|.+ +++.... . +++|.+-...+..+++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 388999999999888765431 11222388999999999999999998 4443321 1 6899999999999999999
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHHhc--CCceEEEEecCCCCCccChHHHHHhhhCCCC-CcEEE--EecCChhHH----
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEFLT--GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHK-GSRVL--VTSRTARVS---- 320 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~ii--vTtR~~~v~---- 320 (1208)
++.++..........+....+.+.+. ++.+++|||++..--...-+.+...+..... .++|+ ..+-+..+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99998555556777777777877774 5789999999954322222455555543332 35443 344433322
Q ss_pred ----hhhCCCCcEeCCCCChhHHHHHHHHHhcc---CCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 321 ----QIMGIRSPYLLEYLPEDQCWSIFKKIAFN---QGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 321 ----~~~~~~~~~~l~~L~~~~~~~lf~~~a~~---~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
..++. ..+...+-+.+|-.+.+..++-. .+.. ....++-+|...++..|---.||..+-+..
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~----~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVI----DDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCc----CccHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 22222 24778899999999999887743 2221 222333344444444445556666655443
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=1.4e-07 Score=110.11 Aligned_cols=198 Identities=33% Similarity=0.363 Sum_probs=132.0
Q ss_pred cEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCC-cccEEecCCCccccccchhcccccccceeeccccc
Q 000962 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY-NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMF 672 (1208)
Q Consensus 594 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~ 672 (1208)
..|++..+.+..-+..+..+..+..|++.+|.++.+|...+.+. +|+.|++++|. +..+|..+..+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 46888888875555557777899999999999999999999885 99999999988 77888889999999999999996
Q ss_pred ccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCC
Q 000962 673 WFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRD 752 (1208)
Q Consensus 673 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~ 752 (1208)
+ ..+|...+.+++|+.|++.++.... ++.. ......|+.|.++.|...
T Consensus 175 l---~~l~~~~~~~~~L~~L~ls~N~i~~---------l~~~-------------------~~~~~~L~~l~~~~N~~~- 222 (394)
T COG4886 175 L---SDLPKLLSNLSNLNNLDLSGNKISD---------LPPE-------------------IELLSALEELDLSNNSII- 222 (394)
T ss_pred h---hhhhhhhhhhhhhhheeccCCcccc---------Cchh-------------------hhhhhhhhhhhhcCCcce-
Confidence 5 5667766688889988887643211 1100 011223455555444211
Q ss_pred CCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCC
Q 000962 753 SSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGM 832 (1208)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~ 832 (1208)
..+..+..+.++..|.+.++....++..+ +.+++++.|++++|.+.....++.+.+|+.|+++++
T Consensus 223 -------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~--~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 223 -------------ELLSSLSNLKNLSGLELSNNKLEDLPESI--GNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred -------------ecchhhhhcccccccccCCceeeeccchh--ccccccceeccccccccccccccccCccCEEeccCc
Confidence 11223344445555555555555445555 456667777777766665555666666666666666
Q ss_pred CCceecC
Q 000962 833 LELEKWP 839 (1208)
Q Consensus 833 ~~~~~~~ 839 (1208)
.....++
T Consensus 288 ~~~~~~~ 294 (394)
T COG4886 288 SLSNALP 294 (394)
T ss_pred cccccch
Confidence 5444433
No 58
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.40 E-value=5.5e-07 Score=92.74 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=32.4
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.||||+++++++...|... .....+++.|+|.+|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999622 2345689999999999999999999984
No 59
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=5.6e-06 Score=97.61 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=114.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc-------------------cccee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-------------------HFESR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 231 (1208)
.++||.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-.. .|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 468999999999999987543 345677999999999999998887322111 11112
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCCCC
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1208)
++++.+.. ...+++.+.+... ..++.-++|||++...+...|..+...+......
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222111 1122222222211 1245568999999877666788888888766667
Q ss_pred cEEEEecCCh-hHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHH
Q 000962 308 SRVLVTSRTA-RVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKA 382 (1208)
Q Consensus 308 s~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~ 382 (1208)
.++|+||.+. .+... ..-...++++.++.++..+.+.+.+...+.. -..+..+.|++.++|.. -|+..
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-------id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-------FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 7888777764 33211 1223689999999999999998877543321 12466778999998855 45544
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.4e-06 Score=102.01 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=115.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|-+..++.+..++.... -...+.++|++|+||||+|+.+++...-.+.+...+|++.+... +....+...
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 358999998898988887643 34677999999999999999998743222222223333321100 000000000
Q ss_pred HHcccC-CCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecC-ChhHHhhh-CCC
Q 000962 251 EFHSKM-EQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSR-TARVSQIM-GIR 326 (1208)
Q Consensus 251 ~~~~~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~-~~~ 326 (1208)
..+... ....+.+.++...+... ..+++-++|+|+++......+..+...+........+|++|. ...+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 001100 00011122222222211 235667999999987665667788887766555555555554 33432222 224
Q ss_pred CcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 327 SPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 327 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
..+++.+++.++..+.+.+.+...+.. -..+....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~-------i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGRE-------AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 589999999999999999887544321 12467788999999988544
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.2e-05 Score=91.57 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=110.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++...-....... .+....+-.++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcCCC
Confidence 468899999999998887543 34678899999999999999998732111100000 0000000000000000
Q ss_pred HHcc-cCCCCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhh-
Q 000962 251 EFHS-KMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI- 322 (1208)
Q Consensus 251 ~~~~-~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~- 322 (1208)
-.+. .........+++.+ +.+.+ .+++-++|+|++...+...++.+...+.......++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 0000 00000011222221 11111 2455699999997665556777777777655667777766543 33322
Q ss_pred hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 323 MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 323 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
.+....+++.+++.++..+.+...+...+.. -.++.+..|++.++|.|-.+
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-------i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESID-------TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 1223688999999999998888776443221 12456778999999987543
No 62
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=1.4e-06 Score=82.89 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=78.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
.+++.|.|+.|+||||++++++.+.. ....++++++.+....... ..+ +.+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccC
Confidence 36899999999999999999997432 3345667766543221100 000 223333434457
Q ss_pred ceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHhh------hCCCCcEeCCCCChhHH
Q 000962 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQI------MGIRSPYLLEYLPEDQC 339 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 339 (1208)
+.+|+||+|.. ..+|......+-+..+..+|++|+........ .|....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999954 36788777777665667899999997655432 12234678899987764
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=8.5e-06 Score=92.97 Aligned_cols=197 Identities=18% Similarity=0.186 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc-eeEEEEecCCCCh-HHHHH-
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDL-PRILK- 247 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~-~~~~~- 247 (1208)
+.++|++..++.+..++..+. .+.+.++|+.|+||||+|+.+++... ...+. ..+.++++.-... ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN------LPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 468899999999999886543 44578999999999999999987321 11121 2234444321100 00000
Q ss_pred --HHHHHcccCCC-CCCcHHHHHHHHHHH---h--cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-h
Q 000962 248 --GMIEFHSKMEQ-STSSISLLETRLLEF---L--TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-R 318 (1208)
Q Consensus 248 --~i~~~~~~~~~-~~~~~~~l~~~l~~~---L--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~ 318 (1208)
.....+..... .....+.+...+... . .+.+-+||+||+..........+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00000000000 001112222222221 1 1345589999996544333455666555445557788877543 2
Q ss_pred HHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 319 VSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 319 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
+.... .....+++.+++.++..+++...+...+.. -..+....+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-------YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 22211 223578889999999999988876543321 124677888899988765543
No 64
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=9.6e-08 Score=102.58 Aligned_cols=116 Identities=18% Similarity=0.083 Sum_probs=78.5
Q ss_pred ccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCC
Q 000962 733 KLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTN 812 (1208)
Q Consensus 733 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 812 (1208)
....+++++.|+|+.|-+. .-..+.....++|+|+.|+++.|....+-.......++.|+.|.|+.|.+
T Consensus 141 ~~k~~~~v~~LdLS~NL~~-----------nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl 209 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFH-----------NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL 209 (505)
T ss_pred hhhhCCcceeecchhhhHH-----------hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC
Confidence 4556677888888877443 33445566778889999999865544333333234688899999999987
Q ss_pred CCcc---ccCCCCCccEEEEeCCCCce-ecCCCCCCccccccccCCCCCCC
Q 000962 813 CRIL---SLGQLSSLRVLNIKGMLELE-KWPNDEDCRFLGRLKISNCPRLN 859 (1208)
Q Consensus 813 ~~~~---~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~ 859 (1208)
.... .+..+|+|+.|+|..|..+. ......-+..|+.|+|++|+.+.
T Consensus 210 s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 210 SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 6433 56678999999999885322 22223446778888888887653
No 65
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.37 E-value=4.7e-06 Score=87.35 Aligned_cols=129 Identities=19% Similarity=0.311 Sum_probs=87.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcC
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~ 276 (1208)
....+.+||++|+||||||+.+....+-.. ..||..|.......-.++|.++.... ..+.+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~---------------~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE---------------KSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH---------------Hhhhc
Confidence 477889999999999999999998433222 45677776655455555555443211 22467
Q ss_pred CceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE--ecCChhH---HhhhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 277 QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV--TSRTARV---SQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 277 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
+|..|++|.|..-+..+-+. ++|--.+|.-++| ||.++.. +..+....++.|+.|..++-..++.+.+
T Consensus 222 rkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 89999999996654433333 3454556776666 8887643 2233445789999999999888887643
No 66
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=4.8e-07 Score=72.98 Aligned_cols=58 Identities=38% Similarity=0.475 Sum_probs=42.4
Q ss_pred CcccEEecCCCCCccccc-ccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCc
Q 000962 591 KYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCI 648 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 648 (1208)
++|++|++++|.++.+|. .|.++++|++|++++|.++.+|+ .|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 357777777777777764 56777777777777777777654 67777777777777765
No 67
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.35 E-value=6.2e-06 Score=99.60 Aligned_cols=203 Identities=20% Similarity=0.203 Sum_probs=122.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccccc---ceeEEEEecCC---CChHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF---ESRMWVCVTVD---YDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~---~~~~~ 244 (1208)
+.++|++..+..+...+.... ...+.|+|++|+||||+|+.+++.......+ ...-||.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 358899999998888775432 4579999999999999999998754333322 12345544321 12222
Q ss_pred HHHHH---------------HHHcccCC-----------------CCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCcc
Q 000962 245 ILKGM---------------IEFHSKME-----------------QSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR 292 (1208)
Q Consensus 245 ~~~~i---------------~~~~~~~~-----------------~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~ 292 (1208)
+...+ +...+... ....-....+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 11111000 00111133577888889999999998888877777
Q ss_pred ChHHHHHhhhCCCCCcEEEE--ecCChhH-Hhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHH
Q 000962 293 KWEPLQQLLKQGHKGSRVLV--TSRTARV-SQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGRE 368 (1208)
Q Consensus 293 ~~~~l~~~l~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~ 368 (1208)
.|+.+...+....+...|+| ||++... ...+ .....+.+.+++.+|.++++.+.+...+.. --+++.+.
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-------ls~eal~~ 380 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-------LAAGVEEL 380 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHH
Confidence 78888877776665555555 6665431 1111 122467889999999999999877532210 11345555
Q ss_pred HHHhcCCChHHHHHHHhh
Q 000962 369 IVGKCKGLPLAVKAIAGF 386 (1208)
Q Consensus 369 i~~~c~g~PLai~~~~~~ 386 (1208)
|++.+..-+-|+..++..
T Consensus 381 L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 381 IARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHCCCcHHHHHHHHHHH
Confidence 666555445666655544
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.3e-05 Score=93.76 Aligned_cols=178 Identities=13% Similarity=0.124 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc-------------------cccee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-------------------HFESR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 231 (1208)
..+||.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++...-.. .|..+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 468999999999999997653 346889999999999999999987321110 11111
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHH----HhcCCceEEEEecCCCCCccChHHHHHhhhCCCCC
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE----FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~----~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1208)
+.+..+.. ...+++.+.+.. -..+++-++|+|+|...+...+..+...+.....+
T Consensus 90 iEIDAAs~---------------------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDAASR---------------------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEeccccc---------------------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 22222111 122222221111 12356679999999776656677777777665566
Q ss_pred cEEEEecCCh-hHHh-hhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 308 SRVLVTSRTA-RVSQ-IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 308 s~iivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
.++|++|.+. .+.. .......+++++++.++..+.+.+.+...+.. -..+....|++.++|-+-.+.
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-------id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-------ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 7777777653 2321 12334689999999999999888877543321 124567789999998774443
No 69
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=1e-07 Score=96.68 Aligned_cols=131 Identities=25% Similarity=0.237 Sum_probs=105.1
Q ss_pred ccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCC
Q 000962 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1208)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1208)
+...+.|..++++ .|.+.. +..+.+-.+.+|+|++|+|.+..+.. +..|.+|..||||+|.++.+-..-.+|.
T Consensus 280 ~dTWq~LtelDLS-----~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 280 ADTWQELTELDLS-----GNLITQ-IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred cchHhhhhhcccc-----ccchhh-hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhc
Confidence 3455667777776 444433 34556778899999999999998765 8899999999999999988876677888
Q ss_pred cccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEec
Q 000962 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG 698 (1208)
Q Consensus 638 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~ 698 (1208)
|.++|.|++|. +..+ +.+.+|.+|.+||+++|++..+..+ .+||+|+.|+++.+.++.
T Consensus 353 NIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 353 NIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred CEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCC
Confidence 99999999986 5555 4788999999999999987665554 689999999999988754
No 70
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=1.5e-05 Score=99.75 Aligned_cols=310 Identities=15% Similarity=0.155 Sum_probs=174.4
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEE---ecCCCC---hHHH
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC---VTVDYD---LPRI 245 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~---~~~~ 245 (1208)
+++||+.+++.+...+..-. .+...++.+.|..|||||+|+++|.. .+.+.+...+--. ...... ..+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 36899999999999887654 34567999999999999999999998 4444422222111 112211 1223
Q ss_pred HHHHHHHccc-------------------CCC------------------C----CCcHH-----HHHHHHHHHh-cCCc
Q 000962 246 LKGMIEFHSK-------------------MEQ------------------S----TSSIS-----LLETRLLEFL-TGQR 278 (1208)
Q Consensus 246 ~~~i~~~~~~-------------------~~~------------------~----~~~~~-----~l~~~l~~~L-~~kr 278 (1208)
+++++.++.. ... . ..... ..+..+.... +.|+
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 3333333210 000 0 00000 1222233333 3569
Q ss_pred eEEEEecCCCCCccChHHHHHhhhCCC----CCcEEEE--ecCCh--hHHhhhCCCCcEeCCCCChhHHHHHHHHHhccC
Q 000962 279 FLLVLDDVWNEDYRKWEPLQQLLKQGH----KGSRVLV--TSRTA--RVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iiv--TtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1208)
.++|+||+.-.|....+-+........ .-+.|.. |.+.. .+-........+.|.||+..+.-.+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999994444333333333222211 1112333 33322 222222334689999999999999998877653
Q ss_pred CCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccC------CChhHHHHHHhhcccccccCCCCCCCCccchhcc
Q 000962 351 GNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKY------DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLS 424 (1208)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~s 424 (1208)
.. ...+....|.++..|.|+-+.-+-..+..+ .+...|..-..+ ....... +.+...+..-
T Consensus 236 ~~--------~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~----i~~~~~~-~~vv~~l~~r 302 (849)
T COG3899 236 KL--------LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS----LGILATT-DAVVEFLAAR 302 (849)
T ss_pred cc--------ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh----cCCchhh-HHHHHHHHHH
Confidence 22 235778899999999999999888888653 223334322211 0100011 1233347778
Q ss_pred ccCCChhHHHHHHHhccCCCCCccChHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHhccCccccc---CC---C
Q 000962 425 YDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSN---ID---D 498 (1208)
Q Consensus 425 y~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~---~~---~ 498 (1208)
.+.||...|..+-..|++-. .|+.+.|...|-. .+.+.+....+.|....++-..+ .+ .
T Consensus 303 l~kL~~~t~~Vl~~AA~iG~--~F~l~~La~l~~~-------------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~ 367 (849)
T COG3899 303 LQKLPGTTREVLKAAACIGN--RFDLDTLAALAED-------------SPALEAAALLDALQEGLILPLSETYRFGSNVD 367 (849)
T ss_pred HhcCCHHHHHHHHHHHHhCc--cCCHHHHHHHHhh-------------chHHHHHHHHHHhHhhceeccccccccccccc
Confidence 89999999999999999954 4556666554421 11455566556555544443221 11 1
Q ss_pred cc-eEEEhhhHHHHHHH
Q 000962 499 KV-KYQMHDLFHDLAQF 514 (1208)
Q Consensus 499 ~~-~~~mhdlv~~~a~~ 514 (1208)
.. +--.||.+++.|-.
T Consensus 368 ~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 368 IATYKFLHDRVQQAAYN 384 (849)
T ss_pred hhhHHhhHHHHHHHHhc
Confidence 11 12458888877643
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.3e-05 Score=96.79 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=114.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc-------------------ccee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-------------------FESR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 231 (1208)
..+||.+..++.+.+++.... -...+.++|..|+||||+|+.+++...-... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999998887643 2456689999999999999999974211111 1111
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHH-HhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEE
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1208)
+++....... .+.+..+.+.+.. -..+++-++|+|++.......++.+...+.......++
T Consensus 91 iEidAas~~k------------------VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTK------------------VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccC------------------HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 2221111111 1112222222211 12467789999999877767778888888665556666
Q ss_pred EEecC-ChhHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH-HHHHH
Q 000962 311 LVTSR-TARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKAI 383 (1208)
Q Consensus 311 ivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~ 383 (1208)
|++|. ...+... ......|++++++.++..+.+.+.+-..+. ....+....|++.++|.|- |+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-------~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-------PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66554 4444322 222368999999999999988876643221 1124667889999999874 44443
No 72
>PRK08727 hypothetical protein; Validated
Probab=98.32 E-value=2e-05 Score=83.45 Aligned_cols=148 Identities=20% Similarity=0.117 Sum_probs=91.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
..+.|+|..|+|||.||+++++. ...+...++|+++.+ ....+. +.+ +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcC
Confidence 45999999999999999999883 333334556776432 111110 111 111 233
Q ss_pred eEEEEecCCCCCc-cChH-HHHHhhhC-CCCCcEEEEecCC---------hhHHhhhCCCCcEeCCCCChhHHHHHHHHH
Q 000962 279 FLLVLDDVWNEDY-RKWE-PLQQLLKQ-GHKGSRVLVTSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIFKKI 346 (1208)
Q Consensus 279 ~LlVlDdvw~~~~-~~~~-~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 346 (1208)
-+||+||+..... ..|. .+...+.. ...|..||+|++. +++...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 5999999953221 2343 23333322 1245679999984 233444455678999999999999999987
Q ss_pred hccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 347 AFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
+...+- .-.+++..-|++.++|-.-++
T Consensus 175 a~~~~l-------~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL-------ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC-------CCCHHHHHHHHHhCCCCHHHH
Confidence 754322 112567788888888766555
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.5e-05 Score=92.84 Aligned_cols=180 Identities=14% Similarity=0.178 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc------------------------
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE------------------------ 226 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------ 226 (1208)
.++||-+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 468999999999999997654 346778999999999999999987321100
Q ss_pred ccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhh
Q 000962 227 HFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLK 302 (1208)
Q Consensus 227 ~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 302 (1208)
.|..+++++... ...++++.+.+... ..++.-++|+|++...+...++.+...+.
T Consensus 91 ~hpDviEIdAas---------------------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDAAS---------------------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEecccc---------------------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 001111221111 11223222222211 13566799999998777677777777776
Q ss_pred CCCCCcEEEE-ecCChhHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 303 QGHKGSRVLV-TSRTARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 303 ~~~~gs~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
....+.++|+ ||....+...+ .-...+.+..++.++..+.+.+.+...+.. ...+..+.|++.++|.|.-.
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-------~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-------HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 5555566555 55544443222 223688999999999999888776543221 12355678999999998644
Q ss_pred HHH
Q 000962 381 KAI 383 (1208)
Q Consensus 381 ~~~ 383 (1208)
..+
T Consensus 223 LsL 225 (700)
T PRK12323 223 LSL 225 (700)
T ss_pred HHH
Confidence 433
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=1.3e-06 Score=96.66 Aligned_cols=136 Identities=24% Similarity=0.412 Sum_probs=85.9
Q ss_pred ccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEe
Q 000962 969 SQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLS 1048 (1208)
Q Consensus 969 ~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~ 1048 (1208)
+..++.|++++|.....| .++ .+|+.|.+++|..+..+|.. -.++|+.|++++|..+..+| ++|+.|+
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~LP--~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP--------~sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-VLP--NELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP--------ESVRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCcccC-CCC--CCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc--------cccceEE
Confidence 467889999998655555 333 47999999998888887752 23689999999997777666 3477777
Q ss_pred ecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCCCC-CCCCceeecCCCCCCCCCCCCCCCccceEeccCC
Q 000962 1049 IRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSL-NSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNC 1124 (1208)
Q Consensus 1049 l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l-~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c 1124 (1208)
++++ ....++ .+|++|+.|.+.++......+. -..+ ++|++|.+++|..+. +| .++|.+|+.|+++.|
T Consensus 119 L~~n-~~~~L~--~LPssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c~~i~-LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGS-ATDSIK--NVPNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGCSNII-LP-EKLPESLQSITLHIE 187 (426)
T ss_pred eCCC-CCcccc--cCcchHhheecccccccccccc---ccccCCcccEEEecCCCccc-Cc-ccccccCcEEEeccc
Confidence 7653 222332 3556777777754331111110 0012 467888888876543 44 236677877777665
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.8e-05 Score=92.72 Aligned_cols=185 Identities=16% Similarity=0.163 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccc-------------------ccccee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-------------------EHFESR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 231 (1208)
..++|-+..++.+...+.... -...+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468899999999999887543 24567899999999999999998731100 012222
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEE
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1208)
+++.......+. +...+.+.+... ..+++-++|+|++...+...++.+...+......+++
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 233222111111 122222222211 2356779999999776666778888888765556665
Q ss_pred EE-ecCChhHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHHHHh
Q 000962 311 LV-TSRTARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIAG 385 (1208)
Q Consensus 311 iv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~ 385 (1208)
|+ ||....+... ......+++++++.++..+.+.+.+...+. ...++....|++.++|-+ -|+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-------~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-------NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 54 5544444322 223468999999999988887776543221 112456678899999855 45554443
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=2.4e-05 Score=91.22 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=114.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccce-eEEEEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-RMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 249 (1208)
..+||-+..+..+...+.... -.+.+.++|+.|+||||+|+.+++...-...... ..+..+....+-..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 467899998988888776543 2467889999999999999999874211111000 0000011110000000000
Q ss_pred ---HHHcccCCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE-ecCChhHHh
Q 000962 250 ---IEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARVSQ 321 (1208)
Q Consensus 250 ---~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~ 321 (1208)
...+.. ......+++.+.+... +.+++-++|+|+++..+...|+.+...+......+.+|+ ||+...+..
T Consensus 96 h~Dv~eida--as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 96 HPDIIEIDA--ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCcEEEeec--cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 000000 0112223333222211 235677999999988766778888888876556666554 555555544
Q ss_pred hh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 322 IM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 322 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
.. .....+++.+++.++..+.+...+...+.. -..+....|++.++|.+--+
T Consensus 174 tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-------ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 174 TIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-------TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 33 233578999999999999999888644321 12455677999999877433
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.27 E-value=1.6e-05 Score=88.90 Aligned_cols=182 Identities=13% Similarity=0.170 Sum_probs=106.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccce-eEEEEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-RMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 249 (1208)
..++|.++.++.+..++.... .+-+.++|++|+||||+|+.+++.. ....|.. ++-+..++..... .++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN------MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 357898888888888776543 4457799999999999999998732 1122221 1111222221111 22222
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhhh-CCCC
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIM-GIRS 327 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~ 327 (1208)
+......... .-.++.-++|+|++..........+...+......+++|+++... .+.... ....
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 2211100000 002456799999997665555566666665445567777766542 221111 1225
Q ss_pred cEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 328 PYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 328 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
.++++++++++..+.+...+-..+.. -..+....|++.++|-.-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~-------i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVP-------YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 78999999999999988877543321 11456788899998876433
No 78
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=9.2e-07 Score=107.84 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=90.9
Q ss_pred ceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCc-ccccccccCCcccEEeecCCCcc-ccchhhccCCcccE
Q 000962 564 LRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT-VLPDSVEELKLLRYLDLSRTEIK-VLPNSICNLYNLQT 641 (1208)
Q Consensus 564 Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~ 641 (1208)
++.|.+. .+.+.+.++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|++. .+|..+++|++|++
T Consensus 420 v~~L~L~-----~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLD-----NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECC-----CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 5666665 45566666778999999999999999998 89999999999999999999998 78999999999999
Q ss_pred EecCCCccccccchhcccc-cccceeeccccc
Q 000962 642 LKLIGCIWIMELPKDLANL-VKLRNLELEEMF 672 (1208)
Q Consensus 642 L~L~~~~~~~~lp~~i~~L-~~L~~L~l~~n~ 672 (1208)
|+|++|.+.+.+|..+..+ .++..+++.+|.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999999999988764 477888888874
No 79
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.26 E-value=6.2e-06 Score=100.35 Aligned_cols=174 Identities=20% Similarity=0.297 Sum_probs=97.1
Q ss_pred CccccchhhHH---HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000962 171 ANVFGRDDDKE---RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 171 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
+.|+|.+..+. .+.+++... ....+.++|++|+||||+|+.+++ .....|.. +.+.. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~~---lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIAN--HTRAHFSS---LNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHH--HhcCccee---ehhhh-hhhH----
Confidence 45788887764 455555443 355678999999999999999998 34444421 11110 0000
Q ss_pred HHHHHcccCCCCCCcHHHHHHHHHHHh--cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE--ecCChh--HHh
Q 000962 248 GMIEFHSKMEQSTSSISLLETRLLEFL--TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV--TSRTAR--VSQ 321 (1208)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~--v~~ 321 (1208)
+.........+.+ .+++.+||||||+.-....++.+...+. .|+.++| ||.+.. +..
T Consensus 92 --------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 --------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1111111221211 2467899999997655455555555443 3555555 444432 211
Q ss_pred h-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 322 I-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 322 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
. ......+.+++++.++...++.+.+-............-.+++...|++.+.|.-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1 1223578999999999999998766411000000011122456677888887764
No 80
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.26 E-value=1.8e-06 Score=91.06 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=61.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC--CChHHHHHHHHHHcccCCCCCCcH------HHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD--YDLPRILKGMIEFHSKMEQSTSSI------SLLET 268 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~------~~l~~ 268 (1208)
....++|+|.+|+|||||++++|++.... +|+.++||.+... .++.++++++...+-....+.... ....+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999965444 8999999998777 788999998843332222111111 11222
Q ss_pred HHHHH-hcCCceEEEEecC
Q 000962 269 RLLEF-LTGQRFLLVLDDV 286 (1208)
Q Consensus 269 ~l~~~-L~~kr~LlVlDdv 286 (1208)
....+ -.+++.++++|++
T Consensus 94 ~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHCCCCEEEEEECH
Confidence 22222 2589999999999
No 81
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.1e-06 Score=70.78 Aligned_cols=59 Identities=36% Similarity=0.411 Sum_probs=51.8
Q ss_pred CcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceeeccccc
Q 000962 614 KLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMF 672 (1208)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~ 672 (1208)
++|++|++++|+++.+|. .|.++++|++|++++|.+..--|..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 78999999999999998654445678999999999999985
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.2e-05 Score=91.35 Aligned_cols=193 Identities=15% Similarity=0.098 Sum_probs=112.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..+||.+..+..+..++.... -...+.++|+.|+||||+|+.+++...-.. ... ...+....+-..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCEN-PIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCccc-ccC--ccccCCCcHHHHHHccCC
Confidence 468999999999988887653 235689999999999999999987321111 000 001111111111111110
Q ss_pred HHc---cc-CCCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEE-EecCChhHHhhh-
Q 000962 251 EFH---SK-MEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL-VTSRTARVSQIM- 323 (1208)
Q Consensus 251 ~~~---~~-~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~~~~- 323 (1208)
..+ .. .....+++.++.+.+... ..++.-++|+|++...+...++.+...+........+| .||....+....
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 00 000112223333333221 23566799999998777677888877776544445544 455544443322
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL 378 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL 378 (1208)
.....|.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-------~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV-------QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCChHH
Confidence 22367999999999998888877654322 1124667889999999884
No 83
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.22 E-value=3.5e-05 Score=87.18 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEe--cCCCChHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV--TVDYDLPRILKG 248 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~ 248 (1208)
..++|+++.++.+..++.... .+.+.|+|..|+||||+|+.+++.. ....+. ..++.+ +...... ..++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHH
Confidence 458899999999999986543 4457999999999999999998732 111121 122322 1111111 1111
Q ss_pred HHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhhh-CCC
Q 000962 249 MIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIM-GIR 326 (1208)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~ 326 (1208)
.+..+..... .-...+-++|+|++..........+...+......+++|+++... .+.... ...
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111100000 001335689999996544344556666666555567777776432 221111 122
Q ss_pred CcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 327 SPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 327 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
..+++.++++++....+...+...+.. -..+....+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~-------i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE-------ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 468899999999988888877543321 124567888999999875543
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.22 E-value=4.2e-05 Score=81.15 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=95.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
...+.|+|+.|+|||+|++.+++. ....-..+.++++..... ...++.+.+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVLEGM----EQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHHHHh----hh-
Confidence 357899999999999999999983 322233456666543100 001111112 11
Q ss_pred ceEEEEecCCCCCc-cChHH-HHHhhhCC-CCC-cEEEEecCCh---------hHHhhhCCCCcEeCCCCChhHHHHHHH
Q 000962 278 RFLLVLDDVWNEDY-RKWEP-LQQLLKQG-HKG-SRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1208)
Q Consensus 278 r~LlVlDdvw~~~~-~~~~~-l~~~l~~~-~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1208)
--+|++||+..... ..|+. +...+... ..| .++|+||+.. ++...+....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 24899999954321 23432 33333221 123 3699998753 445556677899999999999999998
Q ss_pred HHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
+++...+- .--+++..-|++++.|..-++..+-..+
T Consensus 178 ~~a~~~~~-------~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRGF-------ELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcCC-------CCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 87754322 1225778889999987776555444433
No 85
>PRK04195 replication factor C large subunit; Provisional
Probab=98.20 E-value=7.5e-05 Score=88.55 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=111.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.+..++++..|+..-. .....+.+.|+|++|+||||+|+.+++.. . |+ .+-+.++...+. ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEcccccccH-HHHHHHH
Confidence 468999999999999986532 11236789999999999999999999842 1 32 233344433222 2223333
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc----cChHHHHHhhhCCCCCcEEEEecCCh-hHHh--hh
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY----RKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQ--IM 323 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~--~~ 323 (1208)
....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+. .+.. .-
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 2221110 00113678999999965432 235556665553 234466666432 1211 11
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
.....+++.+++.++....+...+...+.. -..++...|++.++|-.-.+......+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~-------i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIE-------CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234578899999999999888777544321 124677889999998776554433333
No 86
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=2.9e-05 Score=84.99 Aligned_cols=216 Identities=14% Similarity=0.117 Sum_probs=139.1
Q ss_pred cCCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
.++.++||+.++..+..|+...- +....+.+.|.|-+|.|||.+...|+.+..-...=..++++.+..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 46789999999999999997664 3455678999999999999999999985332221124577777665677888888
Q ss_pred HHHHcccCCCCCCcHHHHHHHHHHHhcCC--ceEEEEecCCCCCccChHHHHHhhhC-CCCCcEEEEecC-C-hhH----
Q 000962 249 MIEFHSKMEQSTSSISLLETRLLEFLTGQ--RFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSR-T-ARV---- 319 (1208)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR-~-~~v---- 319 (1208)
|...+...........+.++.+.+..+.. -+|+|+|.++.-....-..+...|.+ .-+++|+|+.-- + -+.
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 88877433333222245556666666543 58999999954322333444444433 235666554321 1 011
Q ss_pred Hhhh-----CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhc
Q 000962 320 SQIM-----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLR 388 (1208)
Q Consensus 320 ~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~ 388 (1208)
.... .....+..++.+.++-.++|..+.-...... ..+...+-.|++++.--|-+--|+.+.-+.+.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~--~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSI--FLNAAIELCARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccc--cchHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 1111 1235677899999999999998875433211 13345566667777777777888877776663
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.19 E-value=3.7e-05 Score=81.73 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=90.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
...+.|+|..|+|||+||+.+++... .... ..+++++.... .. + .. ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~-~~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DF-DPE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hh-ccc
Confidence 45788999999999999999998421 2222 33455443211 00 0 01 123
Q ss_pred ceEEEEecCCCCCccChHHHHHhhhCC-CCCc-EEEEecCChhHH--------hhhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 278 RFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGS-RVLVTSRTARVS--------QIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
.-+||+||+...+...-+.+...+... ..+. .||+|++..... ..+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 357999999543322333455555321 2333 467776643221 133334688999999988777776654
Q ss_pred ccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 348 FNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
-..+. .--+++.+.+++.+.|.+..+..+...+
T Consensus 171 ~~~~v-------~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGL-------QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCC-------CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 32221 1124677888899999999887777665
No 88
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.18 E-value=4.1e-06 Score=91.57 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=60.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC--ChHHHHHHHHHHcccCCCCCCcHHH------HHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY--DLPRILKGMIEFHSKMEQSTSSISL------LET 268 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~------l~~ 268 (1208)
+-....|+|++|+||||||++||++.... +|+.++||.+.+.. .+.++++++...+-....+...... ..+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45578999999999999999999965444 89999999999887 6777887776332222222111111 111
Q ss_pred HHHHH-hcCCceEEEEecC
Q 000962 269 RLLEF-LTGQRFLLVLDDV 286 (1208)
Q Consensus 269 ~l~~~-L~~kr~LlVlDdv 286 (1208)
.-+.+ -.+++++|++|++
T Consensus 247 ~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHcCCCEEEEEECh
Confidence 11111 2689999999999
No 89
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=4.5e-05 Score=90.26 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH-H
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG-M 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i 249 (1208)
..+||.+..+..|..++.... -.+.+.++|..|+||||+|+.+++...-.... -+..+.....-..+... .
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCcccHHHHHHhccCc
Confidence 468999999999999987643 24678999999999999999998731111100 00001100000000000 0
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhh-h
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-M 323 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~ 323 (1208)
.+-+..........+.+.+.+... ..+++-++|+|++...+......+...+.......++|++|.+. .+... .
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 000000000111222222222110 13566799999997655445666777776544566777766543 22211 1
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
+....+++..++.++..+.+.+.+-..+.. -..+....|++.++|.+--+.
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-------id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIA-------YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-------cCHHHHHHHHHHhCCCHHHHH
Confidence 223578889999999999888777543321 124567889999998874443
No 90
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.14 E-value=4.2e-07 Score=95.21 Aligned_cols=239 Identities=18% Similarity=0.135 Sum_probs=142.9
Q ss_pred HHhccCCcccEEecCCCCCc-----ccccccccCCcccEEeecCCC---c-cccchh-------hccCCcccEEecCCCc
Q 000962 585 KIFHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTE---I-KVLPNS-------ICNLYNLQTLKLIGCI 648 (1208)
Q Consensus 585 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~---i-~~lp~~-------i~~L~~L~~L~L~~~~ 648 (1208)
.....+..++.|+|++|.+. .+-+.+.+.++||.-++++-- + ..+|+. +-.+++|++||||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 44566778888888888775 344556677788888887641 1 244543 4456788888888887
Q ss_pred cccccchh----cccccccceeeccccccccccc-----------CCccCCCCCcCcCCCceEecccCCCChhhhcCCCC
Q 000962 649 WIMELPKD----LANLVKLRNLELEEMFWFKCST-----------LPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPY 713 (1208)
Q Consensus 649 ~~~~lp~~----i~~L~~L~~L~l~~n~~~~~~~-----------lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 713 (1208)
+-...+.. +.++..|++|+|.+|.+...+. .-.-+++-+.|+++....|....+ ..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~-ga-------- 174 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG-GA-------- 174 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-cH--------
Confidence 54443333 4567888888888885532110 001111222333333322211100 00
Q ss_pred CCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCC---
Q 000962 714 LTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSL--- 790 (1208)
Q Consensus 714 L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--- 790 (1208)
......+...+.|+.+.+..|..... -.......+..+++|+.|+|..|..+.-
T Consensus 175 --------------~~~A~~~~~~~~leevr~~qN~I~~e---------G~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 175 --------------TALAEAFQSHPTLEEVRLSQNGIRPE---------GVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred --------------HHHHHHHHhccccceEEEecccccCc---------hhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 12223355567788888887755421 1234567788899999999985543221
Q ss_pred --CcccccCCCCceeEEEEeCcCCCCcc-------ccCCCCCccEEEEeCCCCceecC-----CCCCCccccccccCCCC
Q 000962 791 --PQWMRDGRLQNLVSLTLKGCTNCRIL-------SLGQLSSLRVLNIKGMLELEKWP-----NDEDCRFLGRLKISNCP 856 (1208)
Q Consensus 791 --p~~~~~~~l~~L~~L~L~~~~~~~~~-------~l~~l~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~l~~~~ 856 (1208)
-..+ ..+++|+.|++++|.+...- .-...|+|++|.+.+|.....-. .....+.|..|.|++|.
T Consensus 232 ~LakaL--~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 232 ALAKAL--SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHh--cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1112 34678999999999765543 23458999999999986543211 22347788889999987
Q ss_pred C
Q 000962 857 R 857 (1208)
Q Consensus 857 ~ 857 (1208)
.
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 5
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=5.4e-05 Score=88.04 Aligned_cols=187 Identities=15% Similarity=0.173 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc-------------------ccee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-------------------FESR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~ 231 (1208)
+.+||.+.....+...+..+. -...+.++|++|+||||+|+.+++...-... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999888888887776543 2356889999999999999999873211100 0011
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHH-HhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEE
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1208)
..+..+....... ...+.+.+.. -..+++-++|+|++..-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid~------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDE------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHH------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 2222211111111 1111111111 02356679999999654444456666666544444444
Q ss_pred EEecCC-hhHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcC-CChHHHHHHHhhh
Q 000962 311 LVTSRT-ARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCK-GLPLAVKAIAGFL 387 (1208)
Q Consensus 311 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~-g~PLai~~~~~~l 387 (1208)
|++|.+ ..+.... .....+++.+++.++....+.+.+...+.. -..++...|++.++ +++.|+..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-------i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-------IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444433 3443322 233578999999999988888877543221 12456678888775 4567766665533
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=6.5e-08 Score=98.26 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=56.7
Q ss_pred cCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCccc--ccCCCCceeEEEEeCcC
Q 000962 734 LSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWM--RDGRLQNLVSLTLKGCT 811 (1208)
Q Consensus 734 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~--~~~~l~~L~~L~L~~~~ 811 (1208)
+.+++.|..|+|+||..... ........+ -++|+.|+|+|+.-.-.-..+ ....+++|..|||++|.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~---------~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTE---------KVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred HHhhhhHhhcCchHhhccch---------hhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 45667788888888865421 111111222 247888888865422111111 01468899999999887
Q ss_pred CCCcc---ccCCCCCccEEEEeCCCCc
Q 000962 812 NCRIL---SLGQLSSLRVLNIKGMLEL 835 (1208)
Q Consensus 812 ~~~~~---~l~~l~~L~~L~L~~~~~~ 835 (1208)
..+.. .+-+++.|++|.++.|..+
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCC
Confidence 66554 6778889999999888643
No 93
>PTZ00202 tuzin; Provisional
Probab=98.13 E-value=3.1e-05 Score=85.00 Aligned_cols=164 Identities=12% Similarity=0.131 Sum_probs=99.6
Q ss_pred cCCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
+...|+||+++...+...|...+ ....+++.|+|++|+|||||++.+.... . + .+++.-.. +..++++.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l--~--~--~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKE--G--M--PAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcC--C--c--eEEEECCC--CHHHHHHH
Confidence 45689999999999999997543 2234699999999999999999998632 2 1 23333333 67999999
Q ss_pred HHHHcccCCCCC--CcHHHHHHHHHHHh-c-CCceEEEEecCCCCCccChHHHHH---hhhCCCCCcEEEEecCChhHHh
Q 000962 249 MIEFHSKMEQST--SSISLLETRLLEFL-T-GQRFLLVLDDVWNEDYRKWEPLQQ---LLKQGHKGSRVLVTSRTARVSQ 321 (1208)
Q Consensus 249 i~~~~~~~~~~~--~~~~~l~~~l~~~L-~-~kr~LlVlDdvw~~~~~~~~~l~~---~l~~~~~gs~iivTtR~~~v~~ 321 (1208)
++.+++...... +-...+++.+.+.- . +++.+||+-=-.. +....+.. .+.....-|.|++---.+.+..
T Consensus 329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg---~~l~rvyne~v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREG---SSLQRVYNEVVALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC---CcHHHHHHHHHHHHccchhheeeeeehHhhcch
Confidence 999999743221 22234444444332 2 6777777653311 22222221 2333344566776544333221
Q ss_pred hh---CCCCcEeCCCCChhHHHHHHHHH
Q 000962 322 IM---GIRSPYLLEYLPEDQCWSIFKKI 346 (1208)
Q Consensus 322 ~~---~~~~~~~l~~L~~~~~~~lf~~~ 346 (1208)
.. .--.-|.+..++.++|.+.-...
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 11235778888988887765543
No 94
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.13 E-value=0.0001 Score=84.67 Aligned_cols=183 Identities=12% Similarity=0.155 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccc--------------------cccce
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR--------------------EHFES 230 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~ 230 (1208)
..++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.++....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 467999999999999887543 34678899999999999999888632100 01221
Q ss_pred eEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcE
Q 000962 231 RMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSR 309 (1208)
Q Consensus 231 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 309 (1208)
+++........ + +...+.+.+... ..+++-++|+|++..........+...+......+.
T Consensus 89 -~~~~~~~~~~~-~-----------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGV-D-----------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCH-H-----------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 22222111111 1 111222221110 124556899999955444456677777765555666
Q ss_pred EEEecCChh-HHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 310 VLVTSRTAR-VSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 310 iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
+|++|.+.. +... ......+++.++++++..+.+...+-..+.. -..+.+..+++.++|.|-.+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-------i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-------IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCChHHHHHHH
Confidence 666665443 2222 1223578899999999998888877543321 114677889999999886655443
No 95
>PRK09087 hypothetical protein; Validated
Probab=98.12 E-value=3.4e-05 Score=80.84 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=91.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
.+.+.|+|..|+|||+|++.+++.. . ..+++.. ....+++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--~-----~~~i~~~------~~~~~~~~---------------------~~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--D-----ALLIHPN------EIGSDAAN---------------------AAAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--C-----CEEecHH------HcchHHHH---------------------hhhc-
Confidence 3568999999999999999988632 1 1233321 11111111 1111
Q ss_pred ceEEEEecCCCCCccChHHHHHhhhC-CCCCcEEEEecCC---------hhHHhhhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 278 RFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
-+|++||+.... ..-+.+...+.. ...|..||+|++. +++...+.....++++++++++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 378889994321 112334443322 1346679998873 4455566777899999999999999999888
Q ss_pred ccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 348 FNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
-..+- .--+++..-|++++.|..-++..+-..|
T Consensus 167 ~~~~~-------~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 167 ADRQL-------YVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHcCC-------CCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 54322 1225778888888888887766544333
No 96
>PRK05642 DNA replication initiation factor; Validated
Probab=98.11 E-value=7.8e-05 Score=78.99 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=95.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
...+.|+|..|+|||.||+.+++. ....-..++|++..+ +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 357899999999999999999873 222223456776532 1110 01 122222222
Q ss_pred ceEEEEecCCCCC-ccChHH-HHHhhhC-CCCCcEEEEecCCh---------hHHhhhCCCCcEeCCCCChhHHHHHHHH
Q 000962 278 RFLLVLDDVWNED-YRKWEP-LQQLLKQ-GHKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIFKK 345 (1208)
Q Consensus 278 r~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (1208)
. ++|+||+.... ...|.. +...+.. ...|.+||+|++.. ++...+.....+++++++.++-.+.+..
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 2 68899995321 134433 4444432 23466789988742 2333444556889999999999999987
Q ss_pred HhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 346 IAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
++...+-. --+++..-|++++.|-.-++..+-..|
T Consensus 178 ka~~~~~~-------l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGLH-------LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCCC-------CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66543221 125778889999888766655544443
No 97
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=8.1e-05 Score=88.73 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..+||-+..++.+...+.... -...+.++|..|+||||+|+.+++...-...+.. -.+... ..-+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHH
Confidence 468999999999998887643 2456789999999999999999873211100000 000000 1111111
Q ss_pred HH-------cccC-CCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCC-hhHH
Q 000962 251 EF-------HSKM-EQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVS 320 (1208)
Q Consensus 251 ~~-------~~~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (1208)
.. +... ....+++.++.+.+... ..+++-++|+|++...+...++.+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 0000 00011222222222211 2466779999999877767788888888765556665555444 4443
Q ss_pred hh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHH
Q 000962 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1208)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 382 (1208)
.. ......|++.+++.++..+.+.+.+-..+. ....+....|++.++|.+--+..
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-------~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-------PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22 222468999999999999988876633221 11245567899999997754433
No 98
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.0001 Score=83.65 Aligned_cols=181 Identities=11% Similarity=0.060 Sum_probs=108.9
Q ss_pred CccccchhhHHHHHHHHcCCCCC----CCCCcEEEEEEecCCchHHHHHHHHhccccccc------------------cc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFD----EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE------------------HF 228 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~F 228 (1208)
..++|-+..++.+..++...... ...-.+-+.++|+.|+||||+|+.++....-.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35789999999999998764300 011356788999999999999999876211100 00
Q ss_pred ceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHH---HHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCC
Q 000962 229 ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLE---TRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG 304 (1208)
Q Consensus 229 ~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~---~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (1208)
+-..++.... ....++++. +.+... ..+++-++|+|++...+......+...+...
T Consensus 85 pD~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 1111221110 011122222 221110 1245568888999776666666777777665
Q ss_pred CCCcEEEEecCCh-hHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHH
Q 000962 305 HKGSRVLVTSRTA-RVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1208)
Q Consensus 305 ~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 382 (1208)
..+..+|++|.+. .+...+ .....+.+.+++.++..+.+..... . ..+.+..+++.++|.|.....
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~---------~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V---------DPETARRAARASQGHIGRARR 212 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C---------CHHHHHHHHHHcCCCHHHHHH
Confidence 5666666666553 343222 2236889999999999888874321 1 135577899999999975544
Q ss_pred H
Q 000962 383 I 383 (1208)
Q Consensus 383 ~ 383 (1208)
+
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 4
No 99
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.10 E-value=0.0001 Score=75.65 Aligned_cols=90 Identities=11% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCC
Q 000962 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNF 353 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 353 (1208)
+.+-++|+||+.......++.+...+......+.+|++|++. .+.... .....+++.+++.++..+.+... + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 556789999997665566777888887656667777777653 222211 22358899999999998888776 1 1
Q ss_pred CccccchhhHHHHHHHHHhcCCChH
Q 000962 354 SSRMQQQNLEAIGREIVGKCKGLPL 378 (1208)
Q Consensus 354 ~~~~~~~~~~~~~~~i~~~c~g~PL 378 (1208)
. ++.+..|++.++|.|.
T Consensus 170 ~--------~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 S--------EEAAELLLALAGGSPG 186 (188)
T ss_pred C--------HHHHHHHHHHcCCCcc
Confidence 1 3668899999999885
No 100
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00012 Score=82.40 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=114.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc--cce----------------eE
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH--FES----------------RM 232 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~----------------~~ 232 (1208)
..++|.+..++.+.+.+..+. -...+.++|+.|+||+|+|..+++..--... .+. .-
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 568999999999999887654 3457899999999999999888773110110 000 00
Q ss_pred EEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc-----CCceEEEEecCCCCCccChHHHHHhhhCCCCC
Q 000962 233 WVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT-----GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1208)
Q Consensus 233 wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1208)
|+.....++...+.... ..-+......-.++++. .+.+.+. +++-++|+||+...+......+...+.....+
T Consensus 94 ~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 94 RIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHccCCCCeEEEeccc-ccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 00001111110000000 00000000111233332 2333332 55679999999777767777788777665556
Q ss_pred cEEEEecCChh-HHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 308 SRVLVTSRTAR-VSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 308 s~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
+.+|++|.... +... ......+.+.+++.++..+++........ .+....+++.++|.|.....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----------HHHHHHHHHHcCCCHHHHHHHh
Confidence 66777776653 3222 22346889999999999999887542110 1222678999999998665543
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=8.3e-05 Score=87.53 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=110.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccc-------------------ccccee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-------------------EHFESR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 231 (1208)
..+||-+..++.+..++.... -...+.++|+.|+||||+|+.+++...-. +.|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999997654 24567899999999999999998732111 111122
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEE
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL 311 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (1208)
+.+..+....+.++ +++++.+.. .-..++.-++|+|+|...+......+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 33322222222211 122221110 0113566689999998766667777777777655667766
Q ss_pred EecCC-hhHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 312 VTSRT-ARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 312 vTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
++|.+ ..+... ......+++++++.++..+.+...+-..+.. -..+....|++.++|.+--+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-------~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-------FENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCcHHHH
Confidence 65543 333322 1223578899999998887776665433221 11345678888998877444
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=7.3e-05 Score=83.54 Aligned_cols=197 Identities=15% Similarity=0.200 Sum_probs=116.4
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc--ccceeEEEEecCCCChHHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE--HFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
...++|-++..+.+...+..+. -...+.|+|..|+||||+|..+++..--.. .+.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 3568999999999999997654 345789999999999999998887321100 011110 000111111222
Q ss_pred HHHHH-------cccC--C-----CCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCc
Q 000962 248 GMIEF-------HSKM--E-----QSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGS 308 (1208)
Q Consensus 248 ~i~~~-------~~~~--~-----~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 308 (1208)
.+... +... . ...-.++++. .+.+++ .+++-++|+|++...+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22211 1100 0 0111234332 344443 2567799999997776666777877776554455
Q ss_pred EEEEec-CChhHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 309 RVLVTS-RTARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 309 ~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
.+|++| +...+.... .....+++.+++.++..+++........ -..+.+..+++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---------~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---------SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544444 433332221 2235899999999999999987432111 113556789999999998665443
No 103
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.08 E-value=9.9e-05 Score=78.18 Aligned_cols=193 Identities=17% Similarity=0.192 Sum_probs=121.4
Q ss_pred hhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHHc
Q 000962 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFH 253 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1208)
+.++++.+++..+. .....-+.|||..|.|||++++++....-... .--.++.|.....++...+...|++.+
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 44566666676554 44566799999999999999999997432111 111467788888999999999999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHhcC-CceEEEEecCCCC---CccChHHHHHhhh---CCCCCcEEEEecCCh--------h
Q 000962 254 SKMEQSTSSISLLETRLLEFLTG-QRFLLVLDDVWNE---DYRKWEPLQQLLK---QGHKGSRVLVTSRTA--------R 318 (1208)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdvw~~---~~~~~~~l~~~l~---~~~~gs~iivTtR~~--------~ 318 (1208)
+...........+...+...++. +-=+||+|.+.+. ...+-..+...+. ..-.=+-|.|-|+.. +
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 98877766666666666666653 3458999999542 1122233333332 223345566666642 2
Q ss_pred HHhhhCCCCcEeCCCCCh-hHHHHHHHHHhc--cCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 319 VSQIMGIRSPYLLEYLPE-DQCWSIFKKIAF--NQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 319 v~~~~~~~~~~~l~~L~~-~~~~~lf~~~a~--~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
.+.. ..++.+..... +|...|+..... .-... .+-...++++.|...++|+.=-+
T Consensus 201 La~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~----S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 201 LASR---FEPFELPRWELDEEFRRLLASFERALPLRKP----SNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCC----CCCCCHHHHHHHHHHcCCchHHH
Confidence 2222 24666766665 455555543322 11111 22345789999999999987433
No 104
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00011 Score=85.00 Aligned_cols=181 Identities=13% Similarity=0.158 Sum_probs=113.5
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc-------------------cccccee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV-------------------REHFESR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 231 (1208)
.++||.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++....- .+.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999988888888886543 2457899999999999999998762100 0111223
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEE
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL 311 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (1208)
+.++.+....+.+ .+++++..... -..+++=++|+|++...+...++.+...+......+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3444333222222 22222221100 013556689999997666566777888877666667666
Q ss_pred Eec-CChhHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 312 VTS-RTARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 312 vTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
++| ....+...+ .....+++.+++.++..+.+.+.+...+.. -.++....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-------i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-------HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 555 444544322 234678999999999999998887654321 12456778999998877543
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.07 E-value=3.1e-05 Score=88.55 Aligned_cols=180 Identities=13% Similarity=0.084 Sum_probs=100.1
Q ss_pred CCccccchhhHHHHHHHHcCCCCC-------CCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000962 170 TANVFGRDDDKERILHMLLSDEFD-------EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1208)
...+.|+++.++++.+.+...-.. +-...+-+.++|++|+|||++|+++++ .....| +.+. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~----~ 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVV----G 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecc----h
Confidence 357899999999998876432100 112345689999999999999999998 344333 2221 1
Q ss_pred HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC-----------ccChHHHHHhh---hC--CCC
Q 000962 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED-----------YRKWEPLQQLL---KQ--GHK 306 (1208)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l---~~--~~~ 306 (1208)
..+.... ++ .....+...+...-...+.+|++||++... ......+...+ .. ...
T Consensus 190 ~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 1111111 00 111111222222223467899999995421 01122233333 21 134
Q ss_pred CcEEEEecCChhH-----HhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 307 GSRVLVTSRTARV-----SQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 307 gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
+.+||.||...+. .........+++...+.++..++|..++....... ... ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~----~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE----DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc----cCC----HHHHHHHcCCCC
Confidence 6778888875432 21112345788999999999999998875543211 112 346666776654
No 106
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00011 Score=86.20 Aligned_cols=196 Identities=12% Similarity=0.116 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+++... |.-|.... ....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHH
Confidence 468999999999999886543 246788999999999999999987321 11111100 000001111111
Q ss_pred HHcc-----cCCCCCCcHHHH---HHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEec-CChhHH
Q 000962 251 EFHS-----KMEQSTSSISLL---ETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-RTARVS 320 (1208)
Q Consensus 251 ~~~~-----~~~~~~~~~~~l---~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 320 (1208)
.... .........+++ ...+... ..+++-++|+|++...+...+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 0000 000001112222 2211110 12344469999997665566777877776555556555544 444443
Q ss_pred hh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHHHHh
Q 000962 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIAG 385 (1208)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~ 385 (1208)
.. ......+++.++++++....+...+...+.. -..+.+..+++.++|.+ .|+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-------Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK-------IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 2234688999999999998888776443221 11456778999999865 44444443
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00013 Score=86.64 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc-------------------cccee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-------------------HFESR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~ 231 (1208)
..+||-+..++.+..++.... -.+.+.++|+.|+||||+|+.++....-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468899999999999887643 245678999999999999999986321110 11112
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCCCC
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1208)
+++..+.. ...+++.+.+... ..+++-++|+|++...+......+...+......
T Consensus 91 ~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 22222111 1122222111111 1356679999999766555667777777665556
Q ss_pred cEEEEecCC-hhHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH-HHHHH
Q 000962 308 SRVLVTSRT-ARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKAI 383 (1208)
Q Consensus 308 s~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~ 383 (1208)
+.+|++|.+ +.+... ......++++.++.++..+.+.+.+...+. ...++..+.|++.++|.+- |+..+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-------~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-------PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666665543 333211 111257889999999999888776643322 1124566788999999774 44433
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.05 E-value=0.00011 Score=76.71 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=97.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhccccccccc--ceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHF--ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L 274 (1208)
....+.|+|..|+|||.|.+++++ +..+.. ..++++++ .+....++..+.. ..... +++.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~-----~~~~~----~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSA------EEFIREFADALRD-----GEIEE----FKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEH------HHHHHHHHHHHHT-----TSHHH----HHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecH------HHHHHHHHHHHHc-----ccchh----hhhhh
Confidence 344578999999999999999998 333322 23455543 4455555555443 12222 33333
Q ss_pred cCCceEEEEecCCCCCcc-Ch-HHHHHhhhC-CCCCcEEEEecCC---------hhHHhhhCCCCcEeCCCCChhHHHHH
Q 000962 275 TGQRFLLVLDDVWNEDYR-KW-EPLQQLLKQ-GHKGSRVLVTSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSI 342 (1208)
Q Consensus 275 ~~kr~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~l 342 (1208)
+ .-=+|++||+..-... .| +.+...+.. ...|-+||+|++. +++...+...-.++++++++++-.++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 3458899999543221 22 223333322 1346689999964 23455566677899999999999999
Q ss_pred HHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHh
Q 000962 343 FKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1208)
Q Consensus 343 f~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 385 (1208)
+.+.|...+-. --++++.-|++.+.+..-.+..+-.
T Consensus 175 l~~~a~~~~~~-------l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 175 LQKKAKERGIE-------LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHTT---------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99988654331 2357777888888766655544433
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00011 Score=87.44 Aligned_cols=195 Identities=10% Similarity=0.099 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc--cceeEEEEecCCCChHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH--FESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
+++||-+..++.+.+++.... -...+.++|..|+||||+|+.+++...-... .....+-.+... ..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHH
Confidence 468998888888988887654 3467799999999999999999652111000 000000000000 00011
Q ss_pred HHHH-----cccCCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEec-CChh
Q 000962 249 MIEF-----HSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-RTAR 318 (1208)
Q Consensus 249 i~~~-----~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 318 (1208)
|... +..........+++.+.+... ..++.-++|+|+|+..+...+..+...+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1000 000000011222332222111 12445589999998777667777777776555556666554 4344
Q ss_pred HHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 319 VSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 319 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
+... ......++++.++.++..+.+.+.+...+.. -..+....|++.++|.+--+.
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-------ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-------AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 4322 2334689999999999999888876543321 124567788899988774443
No 110
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=0.00015 Score=84.28 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=103.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhccccccccc--ceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHF--ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..-+.|+|..|+|||+|++++++ .+.... ..+++++ ..++...+...+.... .....+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 34588999999999999999998 332211 2334443 3456666665554210 11223333333
Q ss_pred CCceEEEEecCCCCCc-cC-hHHHHHhhhC-CCCCcEEEEecCC---------hhHHhhhCCCCcEeCCCCChhHHHHHH
Q 000962 276 GQRFLLVLDDVWNEDY-RK-WEPLQQLLKQ-GHKGSRVLVTSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIF 343 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~~-~~-~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1208)
+.-+||+||+..... .. .+.+...+.. ...|..||+|+.. +++...+...-.+.+++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 344889999954321 11 2344444432 1344568888763 234445566678889999999999999
Q ss_pred HHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhh
Q 000962 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGF 386 (1208)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 386 (1208)
.+++-..+. ...-.+++..-|++.++|.|-.+.-+...
T Consensus 285 ~~~~~~~gl-----~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 285 KKEIKNQNI-----KQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHhcCC-----CCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 988854321 01123578889999999999777655543
No 111
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=7.4e-06 Score=60.05 Aligned_cols=38 Identities=37% Similarity=0.465 Sum_probs=19.9
Q ss_pred cccEEecCCCCCcccccccccCCcccEEeecCCCcccc
Q 000962 592 YLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVL 629 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l 629 (1208)
+|++|++++|.|+.+|..+++|++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555555555555555555555555544
No 112
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=1.1e-06 Score=102.38 Aligned_cols=106 Identities=26% Similarity=0.327 Sum_probs=67.9
Q ss_pred hccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhccccccccee
Q 000962 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 666 (1208)
+..++.|..|++.+|.|..+...+..+.+|++|+|++|.|..+. .+..+..|+.|++.+|. +..++ .+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhcc-CCccchhhhcc
Confidence 56677777777777777766655677777777777777777663 36666667777777776 33332 45557777777
Q ss_pred ecccccccccccCCccCCCCCcCcCCCceEe
Q 000962 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
++++|.+..+...+ ...+.+|+.+.+.++
T Consensus 168 ~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE--LSELISLEELDLGGN 196 (414)
T ss_pred cCCcchhhhhhhhh--hhhccchHHHhccCC
Confidence 77777554331110 355566666665543
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00021 Score=84.33 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc-------------------ee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-------------------SR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------~~ 231 (1208)
.+++|-+..++.+.+++.... -...+.++|+.|+||||+|+.+++...-....+ .+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 357898888888888886543 246788999999999999999987422111000 01
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHH-HhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEE
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1208)
+++.......+ +.+..+.+.+.. -..+++-+||+|++...+...+..+...+........+
T Consensus 91 ~eId~a~~~~I------------------d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 91 VEIDGASNRGI------------------DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred EEEecccccCH------------------HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 12211111111 111122222211 12356679999999766556677787777654445556
Q ss_pred EEecCC-hhHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHHHHhhh
Q 000962 311 LVTSRT-ARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIAGFL 387 (1208)
Q Consensus 311 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~~l 387 (1208)
|++|.. ..+...+ .....+++..++.++..+.+...+...+.. -..+.+..|++.++|.+ .|+..+..++
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-------id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-------YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 665544 4443221 223578999999999999888876543321 12466788899999854 6777766544
No 114
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.0001 Score=84.98 Aligned_cols=193 Identities=13% Similarity=0.124 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEE-----EecCCCChHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWV-----CVTVDYDLPRI 245 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-----~~~~~~~~~~~ 245 (1208)
..++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++.-.-...++...|. .+....+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~---- 86 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES---- 86 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH----
Confidence 468899988888888887543 24568899999999999999988732111111111111 1111100
Q ss_pred HHHHHHHccc-----CCCCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEec-
Q 000962 246 LKGMIEFHSK-----MEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS- 314 (1208)
Q Consensus 246 ~~~i~~~~~~-----~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt- 314 (1208)
-+.+...... ........+++.+ +.+.+ .+++-++|+|++...+...++.+...+......+.+|++|
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 0111100000 0001111233332 22222 2456688999997665567788888887665666666555
Q ss_pred CChhHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 315 RTARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 315 R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
+...+...+ .....+++.++++++..+.+...+-..+. .-..+.+..|++.++|.+--+
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-------~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-------SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHH
Confidence 444443321 11247889999999988888776643221 112567889999999977433
No 115
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00023 Score=85.01 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=113.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc--eeEEEEecCCCChHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE--SRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~ 248 (1208)
..+||.+..++.+..++..+. -..-+.++|+.|+||||+|+.+++...-..... ...+-.+....+ -+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~----C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH----CQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH----HHH
Confidence 468999999999999997653 345788999999999999999987321111000 000000111000 011
Q ss_pred HHHHccc-----CCCCCCcHHHHHH---HHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEec-CChh
Q 000962 249 MIEFHSK-----MEQSTSSISLLET---RLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-RTAR 318 (1208)
Q Consensus 249 i~~~~~~-----~~~~~~~~~~l~~---~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 318 (1208)
|...... .......++++.+ .+... ..+++-++|+|++...+....+.+...+......+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1110000 0001122233222 22110 12455689999997665556777777776655667666544 4444
Q ss_pred HHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 319 VSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 319 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
+...+ .....+++..++.++....+.+.+-..+.. -..+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-------i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-------VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 43222 223688999999999999988877543321 12366788899999988655443
No 116
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.89 E-value=4.7e-05 Score=84.05 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=61.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC--CChHHHHHHHHHHcccCCCCCCcH------HHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD--YDLPRILKGMIEFHSKMEQSTSSI------SLLET 268 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~------~~l~~ 268 (1208)
+-..++|+|.+|+|||||++.+++.... .+|+..+||.+.+. ..+.++++.+...+-....+.... ..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3568999999999999999999985332 37999999999866 788899998865443332221111 11112
Q ss_pred HHHHH-hcCCceEEEEecC
Q 000962 269 RLLEF-LTGQRFLLVLDDV 286 (1208)
Q Consensus 269 ~l~~~-L~~kr~LlVlDdv 286 (1208)
..... -.+++++|++|++
T Consensus 246 ~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHcCCCeEEEEECh
Confidence 22222 2589999999999
No 117
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.88 E-value=4.1e-05 Score=86.02 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=73.2
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..+++.+...+.+...|... +.|.++|++|+|||++|+++++.......|+.+.||.+++.++..+.+..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 35788899999999998754 3678899999999999999998544455788899999999888776654331
Q ss_pred HHcccCCCC-CCcHHHHHHHHHHHh--cCCceEEEEecCCCCCc
Q 000962 251 EFHSKMEQS-TSSISLLETRLLEFL--TGQRFLLVLDDVWNEDY 291 (1208)
Q Consensus 251 ~~~~~~~~~-~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~~~~ 291 (1208)
- .... ......+.+.+.+.- .++++++|+|++...+.
T Consensus 247 P----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 247 P----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred C----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 1 1000 000011112222221 24789999999966543
No 118
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00044 Score=83.75 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..+||.+..++.+..++.... -...+.++|..|+||||+|+.+++...-...... + ...+.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--~----~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--G----RPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--C----CCCccCHHHHHHh
Confidence 468999999999988887543 2456789999999999999999873211100000 0 0001111222222
Q ss_pred HHcccC-----CCCCCcHHHHH---HHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCC-hhHH
Q 000962 251 EFHSKM-----EQSTSSISLLE---TRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVS 320 (1208)
Q Consensus 251 ~~~~~~-----~~~~~~~~~l~---~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (1208)
...... .......+++. +.+... ..+++-++|+|++...+....+.+...+......+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 111100 00111222222 222111 1245678999999665545567777777655556666665543 3333
Q ss_pred hhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 321 QIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 321 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
... .....+++..++.++....+.+.+...+.. -..+.+..|++.++|.+..+...-
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-------i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-------LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 221 223578899999999988888777543321 124677899999999886554443
No 119
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00056 Score=79.95 Aligned_cols=179 Identities=12% Similarity=0.154 Sum_probs=112.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc--cc------------------ccce
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV--RE------------------HFES 230 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~------------------~F~~ 230 (1208)
..+||-+..++.+..++.... -.+++.++|..|+||||+|+.+++...- .. +++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 468999988999998886543 3457789999999999999988763110 00 111
Q ss_pred eEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCCC
Q 000962 231 RMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHK 306 (1208)
Q Consensus 231 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 306 (1208)
++.+..+.. ...+++.+.+... ..+++-++|+|++...+....+.+...+.....
T Consensus 88 v~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 111111111 1123333333210 124566899999977766667778877766566
Q ss_pred CcEEEEecCCh-hHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 307 GSRVLVTSRTA-RVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 307 gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
.+++|++|.+. .+... ......+++.+++.++..+.+...+...+.. -..+.++.|++.++|.+--+..+
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-------i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-------YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCcHHHHHHH
Confidence 67777666553 22211 1223688999999999998888776543321 12467789999999988544443
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00023 Score=85.08 Aligned_cols=200 Identities=15% Similarity=0.129 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEE-----EecCCCChHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWV-----CVTVDYDLPRI 245 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-----~~~~~~~~~~~ 245 (1208)
..+||-+..+..+.+++..+. -...+.++|+.|+||||+|+.+++...-...++...|- .+....+-..+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468899999999988887543 24568899999999999999988732211111100111 11111111110
Q ss_pred HHHHHHHcccCCC-CCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE-ecCChhH
Q 000962 246 LKGMIEFHSKMEQ-STSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARV 319 (1208)
Q Consensus 246 ~~~i~~~~~~~~~-~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v 319 (1208)
....--.+..-.. .....+++...+... ..+++-++|+|+++..+....+.+...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000000000000 111233333222111 234556889999976655567778877766555565554 4444444
Q ss_pred Hhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHH
Q 000962 320 SQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKA 382 (1208)
Q Consensus 320 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~ 382 (1208)
... ......+++.+++.++....+.+.+...+.. -..+.+..|++.++|.. .|+..
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-------I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-------IDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHhCCCHHHHHHH
Confidence 432 2334689999999999888887766433211 12467788999999855 34443
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00044 Score=83.04 Aligned_cols=192 Identities=14% Similarity=0.142 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEec-------CCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT-------VDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-------~~~~~~ 243 (1208)
..++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.++...--....+ .+-.+. ..++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHHHHhhcCCCcEE
Confidence 468899999999999997653 356778999999999999999986311111000 000000 000000
Q ss_pred HHHHHHHHHcccCC-CCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEE-EecCChhHH
Q 000962 244 RILKGMIEFHSKME-QSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL-VTSRTARVS 320 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~-~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~v~ 320 (1208)
.+.... ...+.+.++.+.+... ..+++-++|+|++.......+..+...+........+| +|++...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000000 0011122233322211 13566699999997666567777877776554455544 455555554
Q ss_pred hh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHHHH
Q 000962 321 QI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIA 384 (1208)
Q Consensus 321 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~ 384 (1208)
.. ......+++.+++.++..+.+...+...+.. ...+.++.|++.++|-+ .|+..+-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-------id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENIS-------YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 2234689999999999998888766433221 11356778999998866 4444433
No 122
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00047 Score=79.24 Aligned_cols=179 Identities=15% Similarity=0.165 Sum_probs=104.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccc------cccceeE-EEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR------EHFESRM-WVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~-wv~~~~~~~~~ 243 (1208)
..++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+...-. ..|...+ -+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 457899999999999987643 24688899999999999999997732110 1111111 0110000001
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEec-CChhHHhh
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS-RTARVSQI 322 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 322 (1208)
+..+++++.+... -..+++-++|+|++.......++.+...+......+.+|++| +...+...
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111111111100 012455689999996544445666666665444445555554 33333222
Q ss_pred -hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH
Q 000962 323 -MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL 378 (1208)
Q Consensus 323 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL 378 (1208)
......+++.++++++....+...+...+.. -..+.+..+++.++|.+-
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-------i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-------FEDDALHIIAQKADGALR 204 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHhCCCCHH
Confidence 2233578999999999999888877544321 124677888889998654
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.86 E-value=0.00011 Score=82.59 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=85.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.+...+.+..++..+. ...++.++|.+|+||||+|+.+++. .... ...+..+. ... +..++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-HHHHHHH
Confidence 468999999999999987543 3567888999999999999999873 2221 23344433 111 1111111
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC-CccChHHHHHhhhCCCCCcEEEEecCChh-HHhh-hCCCC
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI-MGIRS 327 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~ 327 (1208)
.... ... .+.+.+-++|+||+... .......+...+.....++++|+||.... +... .....
T Consensus 89 ~~~~-------------~~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 89 TRFA-------------STV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHH-------------Hhh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 1100 000 01234568999999654 22223445555555556778898887532 1111 11224
Q ss_pred cEeCCCCChhHHHHHHHH
Q 000962 328 PYLLEYLPEDQCWSIFKK 345 (1208)
Q Consensus 328 ~~~l~~L~~~~~~~lf~~ 345 (1208)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 667777777777666543
No 124
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=5.7e-06 Score=84.50 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=60.6
Q ss_pred ccCCcccEEecCCCCCc---ccccccccCCcccEEeecCCCccccchhh-ccCCcccEEecCCCcccc-ccchhcccccc
Q 000962 588 HQLKYLRLLDLSSSTLT---VLPDSVEELKLLRYLDLSRTEIKVLPNSI-CNLYNLQTLKLIGCIWIM-ELPKDLANLVK 662 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~---~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~ 662 (1208)
..++.++.|||.+|.|+ ++-..+.+|++|++|+|+.|++...-.+. ..+.+|++|-|.+..+-. ..-+.+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45778889999999887 45455778999999999998766322222 356788899888766432 23344567888
Q ss_pred cceeecccccc
Q 000962 663 LRNLELEEMFW 673 (1208)
Q Consensus 663 L~~L~l~~n~~ 673 (1208)
++.|+++.|.+
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 88888887743
No 125
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00058 Score=81.15 Aligned_cols=197 Identities=14% Similarity=0.141 Sum_probs=114.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..+||.+..++.+..++..+. -.+.+.++|+.|+||||+|+.++....-....+ +-.+....+ -+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~~----C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCES----CVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccHH----HHHhh
Confidence 468999999999999987643 345678999999999999999987321111000 000110000 00000
Q ss_pred H-------H--cccC-CCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE-ecCChh
Q 000962 251 E-------F--HSKM-EQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTAR 318 (1208)
Q Consensus 251 ~-------~--~~~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~ 318 (1208)
. - +... ....+++.++.+.+... ..+++-++|+|++...+....+.+...+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 0 0 0000 00111222222222211 134566899999987776777888888876555666555 555454
Q ss_pred HHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHHHHhh
Q 000962 319 VSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAIAGF 386 (1208)
Q Consensus 319 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~~~~ 386 (1208)
+... ......+++..++.++..+.+.+.+...+.. -..+....|++..+|-+ -|+..+-.+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-------i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-------VDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4432 2234689999999999888887766543321 12356678888999876 444444433
No 126
>CHL00181 cbbX CbbX; Provisional
Probab=97.83 E-value=0.00071 Score=73.76 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=86.2
Q ss_pred ccccchhhHHHHHHHH---cC------CCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000962 172 NVFGRDDDKERILHML---LS------DEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L---~~------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1208)
.++|.+..+++|.++. .- ...........+.++|.+|+||||+|+.++......+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 4677776666554432 11 0101112234588999999999999999987311111111122454441
Q ss_pred HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC---------CccChHHHHHhhhCCCCCcEEEEe
Q 000962 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE---------DYRKWEPLQQLLKQGHKGSRVLVT 313 (1208)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 313 (1208)
.++... ..+. ........+.+. ..-+|++|++... ..+..+.+...+.+...+.+||++
T Consensus 100 ~~l~~~----~~g~-----~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~a 167 (287)
T CHL00181 100 DDLVGQ----YIGH-----TAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFA 167 (287)
T ss_pred HHHHHH----Hhcc-----chHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 122211 1111 111122223221 2359999999542 112234445555555556677777
Q ss_pred cCChhHHhhh--------CCCCcEeCCCCChhHHHHHHHHHhccC
Q 000962 314 SRTARVSQIM--------GIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1208)
Q Consensus 314 tR~~~v~~~~--------~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1208)
+....+...+ .....+++++++.+|..+++...+-..
T Consensus 168 g~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred CCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 7644332111 224578999999999999988877543
No 127
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.82 E-value=4.1e-06 Score=97.72 Aligned_cols=102 Identities=28% Similarity=0.351 Sum_probs=52.7
Q ss_pred CCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecc
Q 000962 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1208)
Q Consensus 590 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 669 (1208)
+..+..+.+..|.+..+-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++|. +..+. .+..++.|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheec
Confidence 33444444555555544344555556666666666555554445555666666666554 33332 34455556666666
Q ss_pred cccccccccCCccCCCCCcCcCCCceEe
Q 000962 670 EMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 670 ~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
+|.+..+ .++..+++|+.+++.++
T Consensus 149 ~N~i~~~----~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 149 GNLISDI----SGLESLKSLKLLDLSYN 172 (414)
T ss_pred cCcchhc----cCCccchhhhcccCCcc
Confidence 6554433 23333555555555543
No 128
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00062 Score=82.15 Aligned_cols=176 Identities=12% Similarity=0.140 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc---------------------ccccc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV---------------------REHFE 229 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~ 229 (1208)
..++|.+..++.+..++.... -.+.+.++|..|+||||+|+.++....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999987653 3466889999999999999888773210 11222
Q ss_pred eeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCC
Q 000962 230 SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH 305 (1208)
Q Consensus 230 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 305 (1208)
. ..+...... ..+++...+.+. ..+++=++|+|++...+...++.+...+....
T Consensus 92 ~-~~ld~~~~~---------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASNN---------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEecccccC---------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 122221111 122222222111 12455688999997766667788888887655
Q ss_pred CCcEEEE-ecCChhHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 306 KGSRVLV-TSRTARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 306 ~gs~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
..+.+|+ ||+...+...+ .....+++.++++++....+.+.+...+.. ...+.+..|++.++|-.--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-------i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-------AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 5666555 54545544332 234679999999999998888876544321 12356788999999866433
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00081 Score=78.32 Aligned_cols=182 Identities=15% Similarity=0.185 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc---------------------ccc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE---------------------HFE 229 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~ 229 (1208)
..++|.+..++.+..++.... -...+.++|..|+||||+|+.+++...-.. +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999987643 246788999999999999999987321100 111
Q ss_pred eeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHH-HhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCc
Q 000962 230 SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGS 308 (1208)
Q Consensus 230 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 308 (1208)
.+++........ +++.++.+.+.. -..+++-++|+|++........+.+...+.......
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111001001 111112221111 113566789999996554445566777776555566
Q ss_pred EEEEecC-ChhHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHHH
Q 000962 309 RVLVTSR-TARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAI 383 (1208)
Q Consensus 309 ~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~ 383 (1208)
.+|++|. ...+... ......+++.++++++..+.+...+-..+. .-..+.+..|++.++|.+ .|+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-------~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-------ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666653 3333222 122357899999999998888877643322 112467788999999866 444443
No 130
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.00013 Score=74.78 Aligned_cols=176 Identities=20% Similarity=0.246 Sum_probs=105.0
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
.+|||.+.-++++.-.+.... .....+--+.++|++|.||||||.-+++ +....+.. .+.+-
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~------tsGp~--------- 87 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI------TSGPA--------- 87 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe------ccccc---------
Confidence 469999988888876665433 1234567899999999999999999998 44433321 11110
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhC--------CCCCcEEE-----------
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ--------GHKGSRVL----------- 311 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~--------~~~gs~ii----------- 311 (1208)
-....++...+.. |+ +.=.+++|.+.......-+.+..++.+ .++++|.|
T Consensus 88 ---------leK~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 88 ---------LEKPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred ---------ccChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 0111122222211 22 234556677765544333344444432 23444443
Q ss_pred EecCChhHHhhhC--CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHH
Q 000962 312 VTSRTARVSQIMG--IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1208)
Q Consensus 312 vTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 382 (1208)
.|||.-.+..... ..-+.+++..+.+|-.+...+.|..-+. +-.++.+.+|+++..|-|--..-
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-------~i~~~~a~eIA~rSRGTPRIAnR 222 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-------EIDEEAALEIARRSRGTPRIANR 222 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-------CCChHHHHHHHHhccCCcHHHHH
Confidence 5899654433221 2246788899999999999888744322 22357789999999999964433
No 131
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.80 E-value=0.00028 Score=73.37 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=114.5
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEE-EEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMW-VCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~~~~~~~~~~~~~i 249 (1208)
..++|-+..+..+.+.+... ...+...+|++|.|||+-|+.++....-.+.|.+++- .++|...... +.++=
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 46889999999999888763 3778999999999999999998874333455665442 2233221111 11000
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHHh--cCCc-eEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCC-hhHHhhh-C
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEFL--TGQR-FLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVSQIM-G 324 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~-~ 324 (1208)
..+.+.+........ ..++ =.+|||+++....+.|..+...+.+....+|.|..+-. ..+-... .
T Consensus 109 ----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 ----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 011111111000000 1233 37889999888889999999998876666775544433 2222111 1
Q ss_pred CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 325 IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
....|..++|.+++..+-+...+-..+.. -..+..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~-------~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVD-------IDDDALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHcCCcH
Confidence 22578899999999999999888655432 22466778999988753
No 132
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.79 E-value=0.00048 Score=74.69 Aligned_cols=160 Identities=11% Similarity=0.137 Sum_probs=82.6
Q ss_pred ccccchhhHHHHHHHHcC---------CCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000962 172 NVFGRDDDKERILHMLLS---------DEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1208)
.++|.+..+++|.+.... .+........-+.++|++|+||||+|+.+++...-...-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478988877766533211 1111123456788999999999999999986311001011112333321
Q ss_pred HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC--------ccChHHHHHhhhCCCCCcEEEEec
Q 000962 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED--------YRKWEPLQQLLKQGHKGSRVLVTS 314 (1208)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTt 314 (1208)
.++... .+ ......+...+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 83 ~~l~~~---~~------g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVGE---YI------GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhhh---hc------cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111111 00 11112222223221 23489999996421 112344444444433334555665
Q ss_pred CChhH----------HhhhCCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 315 RTARV----------SQIMGIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 315 R~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
...+. ...+ ...++++.++.++-.+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHH
Confidence 43322 2221 346789999999999999887754
No 133
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=8.1e-07 Score=101.05 Aligned_cols=110 Identities=27% Similarity=0.309 Sum_probs=62.3
Q ss_pred HHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccc
Q 000962 584 DKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVK 662 (1208)
Q Consensus 584 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 662 (1208)
+.++.-++.|+.|||++|.++... .+..|.+|+.|||++|.+..+|. +...++ |+.|.+++|. +.++ .++.+|.+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKS 255 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhh-hhHHhhhh
Confidence 444555566666666666666543 46666666666666666666655 233333 6666666655 3333 35666666
Q ss_pred cceeecccccccccccCCccCCCCCcCcCCCceEec
Q 000962 663 LRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG 698 (1208)
Q Consensus 663 L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~ 698 (1208)
|++||+++|.+..-.++ ..++.|..|..|.+-+|.
T Consensus 256 L~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCc
Confidence 66666666655433222 223445566666665543
No 134
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.78 E-value=0.00028 Score=88.64 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=84.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc------cceeEE-EEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH------FESRMW-VCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~w-v~~~~~~~~~ 243 (1208)
+.+|||+.++.+++..|.... ..-+.++|.+|+||||+|+.++. ++... .+..+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhh-----
Confidence 578999999999999987654 33456999999999999999998 33211 122232 22211
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCCC-------ccChHH-HHHhhhCCCCCcEEEEec
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNED-------YRKWEP-LQQLLKQGHKGSRVLVTS 314 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~-------~~~~~~-l~~~l~~~~~gs~iivTt 314 (1208)
+ .........-...+...+.+.- .+++.+|++|++..-. ..+... +...+.. + .-++|-||
T Consensus 254 -l-------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G-~l~~IgaT 323 (852)
T TIGR03345 254 -L-------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-G-ELRTIAAT 323 (852)
T ss_pred -h-------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-C-CeEEEEec
Confidence 0 0000000011112222222221 2578999999995421 111112 3333322 2 24555555
Q ss_pred CChhHHh-------hhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 315 RTARVSQ-------IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 315 R~~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
...+... .......+.+++++.+++.+++....
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 5432211 11223589999999999999976544
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.8e-05 Score=56.99 Aligned_cols=35 Identities=46% Similarity=0.515 Sum_probs=28.7
Q ss_pred CcccEEeecCCCccccchhhccCCcccEEecCCCc
Q 000962 614 KLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCI 648 (1208)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 648 (1208)
++|++|++++|+|+.+|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 47889999999999888888899999999998887
No 136
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.77 E-value=6.8e-06 Score=86.35 Aligned_cols=242 Identities=20% Similarity=0.189 Sum_probs=157.6
Q ss_pred ccccCCcccEEeecCCCcc-----ccchhhccCCcccEEecCCCccc----cccchh-------cccccccceeeccccc
Q 000962 609 SVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGCIWI----MELPKD-------LANLVKLRNLELEEMF 672 (1208)
Q Consensus 609 ~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~----~~lp~~-------i~~L~~L~~L~l~~n~ 672 (1208)
.+..+..+.+|+|++|.+. .+-+.+.+.++|+..+++.- +. ..+|.. +...++|++|+|+.|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3566788999999999886 45566788889999999853 23 344543 3456799999999997
Q ss_pred ccccccCC---ccCCCCCcCcCCCceEecccCCCChhhhcC-CCCCCCceeeCCccccccccccccCcccCcceEEeeec
Q 000962 673 WFKCSTLP---AGIGKLTNLHNLHVFRVGSKSGYRIEELKE-LPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1208)
Q Consensus 673 ~~~~~~lp---~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 748 (1208)
+.. ..++ ..+.++++|++|.+.+|+..... -..++. |..+ .........+.|+.+....|
T Consensus 104 ~G~-~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a-g~~l~~al~~l--------------~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 104 FGP-KGIRGLEELLSSCTDLEELYLNNCGLGPEA-GGRLGRALFEL--------------AVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCc-cchHHHHHHHHhccCHHHHhhhcCCCChhH-HHHHHHHHHHH--------------HHHhccCCCcceEEEEeecc
Confidence 642 1121 23467899999999876432211 011110 0000 01123455678888888877
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCC-----cccccCCCCceeEEEEeCcCCCCcc------c
Q 000962 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLP-----QWMRDGRLQNLVSLTLKGCTNCRIL------S 817 (1208)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-----~~~~~~~l~~L~~L~L~~~~~~~~~------~ 817 (1208)
..... .-...-..++.++.|+.+.+..+.+..-- ..+ ..+++|+.|+|.+|.++..- .
T Consensus 168 rlen~---------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal--~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 168 RLENG---------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEAL--EHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred ccccc---------cHHHHHHHHHhccccceEEEecccccCchhHHHHHHH--HhCCcceeeecccchhhhHHHHHHHHH
Confidence 65421 22344466777899999999855432111 112 56899999999999887654 6
Q ss_pred cCCCCCccEEEEeCCCCceec-----CCC-CCCccccccccCCCCCCCccCc-------cCCCcCEEEEecccc
Q 000962 818 LGQLSSLRVLNIKGMLELEKW-----PND-EDCRFLGRLKISNCPRLNELPE-------CMPNLTVMKIKKCCS 878 (1208)
Q Consensus 818 l~~l~~L~~L~L~~~~~~~~~-----~~~-~~~~~L~~L~l~~~~~l~~~~~-------~~~~L~~L~l~~c~~ 878 (1208)
+..+|+|++|++++|..-..= ..+ ...++|+.+.+.+|.....-.. ..|.|..|.+.+|.-
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 778999999999998532210 011 3478899999999876543111 468888888888653
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00064 Score=84.22 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc----------------------c
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH----------------------F 228 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------------F 228 (1208)
..+||.+..++.|..++.... -.+.+.++|..|+||||+|+.+++...-... +
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 468999999999999987643 2456889999999999999999874221111 1
Q ss_pred ceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHH-HhcCCceEEEEecCCCCCccChHHHHHhhhCCCCC
Q 000962 229 ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKG 307 (1208)
Q Consensus 229 ~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 307 (1208)
| ++++....... .+++.++.+.+.. -..+++-++|||++...+...++.|...+......
T Consensus 90 d-v~eidaas~~~------------------Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 90 D-VTEIDAASHGG------------------VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred c-EEEecccccCC------------------HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 1 11221111111 1112222222111 12355668999999877777788888888766566
Q ss_pred cEEEEec-CChhHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 308 SRVLVTS-RTARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 308 s~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
+.+|++| ....+...+ .....|++..++.++..+.+.+.+-..+.. ...+....|++.++|.+..+
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-------id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-------VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 6666555 444444322 234688999999999888887765332221 12355678899999977433
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.76 E-value=0.00089 Score=69.60 Aligned_cols=136 Identities=16% Similarity=0.076 Sum_probs=81.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
+.+.|+|++|+|||+|++.+++.. .. .++. .... . . +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~------------------~---~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFF------------------N---E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhh------------------c---h-------hHH-hcC
Confidence 578999999999999999988732 11 1111 0000 0 0 001 123
Q ss_pred eEEEEecCCCCCccChHHHHHhhhC-CCCCcEEEEecCCh-------hHHhhhCCCCcEeCCCCChhHHHHHHHHHhccC
Q 000962 279 FLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSRTA-------RVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~-------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1208)
-++++||+..... ..+...+.. ...|..||+|++.+ +....+.....++++++++++-..++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 5788999942111 123322221 13566899998743 234445556689999999999888888776532
Q ss_pred CCCCccccchhhHHHHHHHHHhcCCChHHHHH
Q 000962 351 GNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1208)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 382 (1208)
+- .--+++..-|++++.|---.+.-
T Consensus 164 ~l-------~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 164 SV-------TISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred CC-------CCCHHHHHHHHHHccCCHHHHHH
Confidence 21 11257778888888776544443
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.76 E-value=0.00091 Score=77.84 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=93.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhccccccccc--ceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHF--ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
...+.|+|..|+|||+||+++++. +.+.. ..++++++ .++..++...+... ..... .+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEF----KEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHH----HHHHH
Confidence 456889999999999999999983 33332 23455543 33344444444321 22223 23333
Q ss_pred CCceEEEEecCCCCCccCh--HHHHHhhhCC-CCCcEEEEecCCh---------hHHhhhCCCCcEeCCCCChhHHHHHH
Q 000962 276 GQRFLLVLDDVWNEDYRKW--EPLQQLLKQG-HKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIF 343 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1208)
+ .-+|||||+......++ +.+...+... ..|..||+|+... .+...+.....+++++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 34889999954321111 2333333221 2345688877642 12233334457899999999999999
Q ss_pred HHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
.+.+...+.. --+++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~~-------l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLE-------LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCC-------CCHHHHHHHHHhcCCCHHHHH
Confidence 9888653321 125777888888888765433
No 140
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0012 Score=77.49 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc--cc-----------------cccee
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV--RE-----------------HFESR 231 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-----------------~F~~~ 231 (1208)
..++|-+..++.+..++.... -.+.+.++|+.|+||||+|+.++....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 357899999999999997643 2456778999999999999998873110 00 01111
Q ss_pred EEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEE
Q 000962 232 MWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1208)
Q Consensus 232 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1208)
+++..+.... .++...+.+.+... ..+++-++|+|++........+.+...+........+
T Consensus 91 ~eidaas~~g------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRG------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCC------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1221111111 11112222222111 1356679999999765545567777777655445555
Q ss_pred EE-ecCChhHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 311 LV-TSRTARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 311 iv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
|+ ||+...+... ......+++.+++.++....+...+-..+.. -..+.+..|++.++|.+-.+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-------id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-------YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55 4444343322 2223578999999999888888776443321 12356778888999876544433
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.75 E-value=0.00021 Score=81.87 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=89.7
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..+.|+++.++++.+.+..+-. -+-...+-|.++|++|+|||++|+++++. .... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----H
Confidence 4688999999999886632110 01123556889999999999999999983 3322 233321 1
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC-----------CccChHHHHHhhhC-----CCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-----------DYRKWEPLQQLLKQ-----GHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~~-----~~~g 307 (1208)
.+.. ... ......+...+...-...+.+|+|||+..- +......+...+.. ...+
T Consensus 200 ~l~~----~~~-----g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 200 ELVQ----KFI-----GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHhH----hhc-----cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 1111 110 011111222222222346789999999531 00112223333321 1235
Q ss_pred cEEEEecCChhHHhh-h----CCCCcEeCCCCChhHHHHHHHHHhccC
Q 000962 308 SRVLVTSRTARVSQI-M----GIRSPYLLEYLPEDQCWSIFKKIAFNQ 350 (1208)
Q Consensus 308 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~ 350 (1208)
.+||.||...+.... + ..+..+++...+.++..++|+.+....
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM 318 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC
Confidence 678878775432211 1 224578999999999999999877543
No 142
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00032 Score=87.63 Aligned_cols=156 Identities=17% Similarity=0.246 Sum_probs=84.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc---ccccc-ceeEEEEecCCCChHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER---VREHF-ESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~~~~~~~~~~~ 246 (1208)
+.++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++.... +...+ +..+|. + +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh
Confidence 478999999999999887653 33457999999999999999998321 11111 233432 1 111111
Q ss_pred HHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCCC---------ccChHHHHHhhhCCCCCcEEEEecCC
Q 000962 247 KGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNED---------YRKWEPLQQLLKQGHKGSRVLVTSRT 316 (1208)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1208)
.. ... ..+.+.....+.+.+ +.++.+|++|++..-- .+.-+.+...+.. +. -++|-+|..
T Consensus 251 a~-------~~~-~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g~-i~~IgaTt~ 320 (731)
T TIGR02639 251 AG-------TKY-RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-GK-LRCIGSTTY 320 (731)
T ss_pred hh-------ccc-cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-CC-eEEEEecCH
Confidence 10 000 111222222222222 3467899999995211 0111223333322 21 234444443
Q ss_pred hhHHh-------hhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 317 ARVSQ-------IMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 317 ~~v~~-------~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
.+... .......++++.++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22110 11123578999999999999998655
No 143
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.73 E-value=0.001 Score=72.73 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=85.6
Q ss_pred ccccchhhHHHHHHHHc---CC------CCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000962 172 NVFGRDDDKERILHMLL---SD------EFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~---~~------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1208)
.++|.+..+++|.++.. .. +........-+.++|.+|+||||+|+.++............-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 46777776666544321 10 000111233588999999999999988776211111111123454442
Q ss_pred HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC---------CccChHHHHHhhhCCCCCcEEEEe
Q 000962 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE---------DYRKWEPLQQLLKQGHKGSRVLVT 313 (1208)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 313 (1208)
.++ ...+.+. ........+.+. ..-+|+||++..- ....++.+...+.....+.+||++
T Consensus 99 ~~l----~~~~~g~-----~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a 166 (284)
T TIGR02880 99 DDL----VGQYIGH-----TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILA 166 (284)
T ss_pred HHH----hHhhccc-----chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 122 2111111 111222223221 3368999999522 112234556666555556677777
Q ss_pred cCChhHHhhh--------CCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 314 SRTARVSQIM--------GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 314 tR~~~v~~~~--------~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
+......... .....+++++++.+|-.+++...+-.
T Consensus 167 ~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred CCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 6543222111 11356899999999999998887644
No 144
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.70 E-value=0.0011 Score=71.28 Aligned_cols=166 Identities=17% Similarity=0.228 Sum_probs=104.2
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
++.|.+|+.++..+..++.... ..-+.+|-|+|-.|.|||.+.+++.+.. . -..+|+++-..++.+.++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHH
Confidence 3567899999999999987765 2235567999999999999999999843 2 235899999999999999999
Q ss_pred HHHcccCCCCC-------CcHHHHHHHHHHH--hc--CCceEEEEecCCCCCccChHHH-HHhh----hCCCCCcEEEEe
Q 000962 250 IEFHSKMEQST-------SSISLLETRLLEF--LT--GQRFLLVLDDVWNEDYRKWEPL-QQLL----KQGHKGSRVLVT 313 (1208)
Q Consensus 250 ~~~~~~~~~~~-------~~~~~l~~~l~~~--L~--~kr~LlVlDdvw~~~~~~~~~l-~~~l----~~~~~gs~iivT 313 (1208)
+...+....+. .........+.++ .. ++.++||||++..- .+.+.+ ...+ .-.....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99885222221 1222333333331 22 46899999999432 222221 1111 111222334555
Q ss_pred cCChh--HHh-hhCCCC--cEeCCCCChhHHHHHHHH
Q 000962 314 SRTAR--VSQ-IMGIRS--PYLLEYLPEDQCWSIFKK 345 (1208)
Q Consensus 314 tR~~~--v~~-~~~~~~--~~~l~~L~~~~~~~lf~~ 345 (1208)
+-... .-. .+|... ++....-+.+|..+++.+
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 44322 211 134443 455677788888887765
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0013 Score=79.38 Aligned_cols=196 Identities=11% Similarity=0.086 Sum_probs=110.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.+..++.+..++.... -...+.++|..|+||||+|+.++....-. ..+....-.+. .-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~~~~Cg----~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPTPEPCG----KCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCCCCCCc----ccHHHHHHh
Confidence 467899999999999887643 23567899999999999999998742111 11000000011 011111111
Q ss_pred HHccc-----CCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCC-hhHH
Q 000962 251 EFHSK-----MEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVS 320 (1208)
Q Consensus 251 ~~~~~-----~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~ 320 (1208)
..... ........+.+.+.+... ..+++-++|+|++.......++.+...+........+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11000 000112223332222111 1245568999999766656677788777654445555554443 3333
Q ss_pred hhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 321 QIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 321 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
..+ .....+++..++.++....+.+.+...+.. -..+.+..|++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-------is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-------IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 233578888999998888887766543221 11356788999999987544433
No 146
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.0019 Score=74.91 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=89.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
..-+.|+|..|+|||+||+++++. +...-..+++++. ..+...+...+... .. ..+++.++ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356789999999999999999983 3322233455543 33444444444321 11 22333333 3
Q ss_pred ceEEEEecCCCCCccC--hHHHHHhhhCC-CCCcEEEEecCCh---------hHHhhhCCCCcEeCCCCChhHHHHHHHH
Q 000962 278 RFLLVLDDVWNEDYRK--WEPLQQLLKQG-HKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIFKK 345 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (1208)
.-+|++||+....... .+.+...+... ..|..||+||... .+...+.....+++++++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4588899985432111 13333333211 1345688888542 2333444556889999999999999988
Q ss_pred HhccCCCCCccccchhhHHHHHHHHHhcCCC
Q 000962 346 IAFNQGNFSSRMQQQNLEAIGREIVGKCKGL 376 (1208)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 376 (1208)
++-..+.. --+++..-|++.+.|.
T Consensus 283 k~~~~~~~-------l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIR-------IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCC-------CCHHHHHHHHHhcCCC
Confidence 87543221 1245566677766643
No 147
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=2.7e-06 Score=96.99 Aligned_cols=108 Identities=24% Similarity=0.178 Sum_probs=75.4
Q ss_pred ccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCC
Q 000962 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1208)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1208)
+.-++.|++|.++ .|.+.... .+..+..|+.|||++|.+..+|.--..--+|..|+|++|.++.+ ..+.+|+
T Consensus 183 Lqll~ale~LnLs-----hNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~Lk 254 (1096)
T KOG1859|consen 183 LQLLPALESLNLS-----HNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLK 254 (1096)
T ss_pred HHHHHHhhhhccc-----hhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhh
Confidence 4456677777776 55555543 67788888888888888887775321122488888888888877 4578888
Q ss_pred cccEEecCCCcccccc-chhcccccccceeecccccc
Q 000962 638 NLQTLKLIGCIWIMEL-PKDLANLVKLRNLELEEMFW 673 (1208)
Q Consensus 638 ~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~n~~ 673 (1208)
+|+.||+++|-+.+.- -..++.|..|+.|+|.+|.+
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8888888887533211 12357788888888888854
No 148
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2.4e-06 Score=87.17 Aligned_cols=84 Identities=30% Similarity=0.340 Sum_probs=69.0
Q ss_pred CcccEEecCCCCCc--ccccccccCCcccEEeecCCCcc-ccchhhccCCcccEEecCCCccccccch--hcccccccce
Q 000962 591 KYLRLLDLSSSTLT--VLPDSVEELKLLRYLDLSRTEIK-VLPNSICNLYNLQTLKLIGCIWIMELPK--DLANLVKLRN 665 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~ 665 (1208)
+.|++|||++..|+ .+-.-+..+.+|+.|.|.++++. .+-..|.+-.+|+.||+++|+...+... -+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 36899999999987 56566888999999999999988 6677889999999999999986654322 3578999999
Q ss_pred eeccccccc
Q 000962 666 LELEEMFWF 674 (1208)
Q Consensus 666 L~l~~n~~~ 674 (1208)
|+++.|.+.
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 999988654
No 149
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0017 Score=77.39 Aligned_cols=197 Identities=12% Similarity=0.064 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|-+..++.+..++.... -.+.+.++|+.|+||||+|+.+++...-..... ...+....+-..+.....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHHHHHHcCCC
Confidence 468999999999999997643 356788999999999999999987421111000 000111111111000000
Q ss_pred -HHcccCCCCCCcHHHHHHH---HHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecC-ChhHHhhh-
Q 000962 251 -EFHSKMEQSTSSISLLETR---LLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSR-TARVSQIM- 323 (1208)
Q Consensus 251 -~~~~~~~~~~~~~~~l~~~---l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~- 323 (1208)
+-...........+++.+. +... ..+++-++|+|++...+...++.+...+........+|++|. ...+....
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 0000000001222222221 1111 235666899999976665667777777765555666665554 33443221
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHH
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 382 (1208)
.....+++.+++.++..+.+...+...+.. -..+.+..|++.++|.+-.+..
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~-------id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-------YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHH
Confidence 223578999999999988888776443321 1246677889999997754433
No 150
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.63 E-value=0.0016 Score=76.69 Aligned_cols=159 Identities=17% Similarity=0.131 Sum_probs=94.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhccccccccc--ceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHF--ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..-+.|+|..|+|||+||+++++ .....+ ..++++++. ++..++...+... .... +.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEE----FKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHHh
Confidence 35689999999999999999998 444443 234455443 3333444443211 1222 333333
Q ss_pred CCceEEEEecCCCCCccC--hHHHHHhhhC-CCCCcEEEEecCCh---------hHHhhhCCCCcEeCCCCChhHHHHHH
Q 000962 276 GQRFLLVLDDVWNEDYRK--WEPLQQLLKQ-GHKGSRVLVTSRTA---------RVSQIMGIRSPYLLEYLPEDQCWSIF 343 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~~~~--~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1208)
+.-+|||||+......+ .+.+...+.. ...|..||+|+... .+...+.....+++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 34489999995422111 1233333321 12344588877643 22334455568999999999999999
Q ss_pred HHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
.+.+...+. .--+++..-|++.++|..-.+.
T Consensus 290 ~~~~~~~~~-------~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGI-------DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCC-------CCCHHHHHHHHcCcCCCHHHHH
Confidence 998864321 1125678889999888765443
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0011 Score=79.84 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..+||.+..++.+..++.... -.+.+.++|..|+||||+|+.+++...-....+. -.+... ..-++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---~~c~~c----~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---EPCNVC----PPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---CCCCcc----HHHHHHh
Confidence 468999999999999887643 2466789999999999999998873211110000 000000 0000000
Q ss_pred HH-------cccC-CCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE-ecCChhHH
Q 000962 251 EF-------HSKM-EQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARVS 320 (1208)
Q Consensus 251 ~~-------~~~~-~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~ 320 (1208)
.. +... ....+++.++.+.+... ..+++-++|+|++...+....+.+...+........+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000 00011222222222111 124556899999976665667778877766555666655 55545454
Q ss_pred hhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHHH
Q 000962 321 QIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKAI 383 (1208)
Q Consensus 321 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~~ 383 (1208)
..+ .....+++..++.++....+...+...+.. -..+....|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-------i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-------ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 322 233578899999999888877765433221 12456778889998865 455444
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.0025 Score=76.45 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.++....-...-+. ..+... ..-+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~---~pC~~C----~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG---EPCNEC----EICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCCcc----HHHHHHh
Confidence 468999999999999987653 3567788999999999999999763111110000 000000 0111111
Q ss_pred HHc-------ccCC-CCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE-ecCChhHH
Q 000962 251 EFH-------SKME-QSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARVS 320 (1208)
Q Consensus 251 ~~~-------~~~~-~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~ 320 (1208)
... .... ...+.+.++.+.+... ..+++-++|+|++.......+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 000 0000 0011122222222211 135667889999976655667777777765444445454 54444443
Q ss_pred hhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 321 QIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 321 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
..+ .....+++.+++.++..+.+...+-..+.. -..+.+..|++.++|-+.-+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~-------i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIE-------YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHH
Confidence 221 223578899999999988888877543321 12456778888888877543
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.58 E-value=0.00057 Score=86.42 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=84.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc---ccccc-ceeEEEEecCCCChHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER---VREHF-ESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~~~~~~~~~~~ 246 (1208)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 468999999999999997653 33456999999999999999987321 11111 234442 1 122211
Q ss_pred HHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC-------CccChHHHHHhhhCCCCCcEEEEecCChhH
Q 000962 247 KGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-------DYRKWEPLQQLLKQGHKGSRVLVTSRTARV 319 (1208)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 319 (1208)
.+......-.+.+...+.+.-+.++.+|++|++..- ...+...+..+.-..+. -++|.+|...+.
T Consensus 248 -------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~-l~~IgaTt~~ey 319 (821)
T CHL00095 248 -------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE-LQCIGATTLDEY 319 (821)
T ss_pred -------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC-cEEEEeCCHHHH
Confidence 111111111112222222222356899999999421 00112223322222222 345555554432
Q ss_pred Hhh-------hCCCCcEeCCCCChhHHHHHHHHH
Q 000962 320 SQI-------MGIRSPYLLEYLPEDQCWSIFKKI 346 (1208)
Q Consensus 320 ~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 346 (1208)
... ......+.++..+.++...++...
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 211 122356788888989988887754
No 154
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0024 Score=74.38 Aligned_cols=159 Identities=17% Similarity=0.109 Sum_probs=94.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhccccccccc-c-eeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHF-E-SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..-+.|+|..|+|||+||+++++ .+.... . .++|+++ .++..++...+... .... +++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 34589999999999999999998 333332 2 3556654 34555555544321 1222 233333
Q ss_pred CCceEEEEecCCCCC-ccCh-HHHHHhhhC-CCCCcEEEEecC-Chh--------HHhhhCCCCcEeCCCCChhHHHHHH
Q 000962 276 GQRFLLVLDDVWNED-YRKW-EPLQQLLKQ-GHKGSRVLVTSR-TAR--------VSQIMGIRSPYLLEYLPEDQCWSIF 343 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~-~~~~-~~l~~~l~~-~~~gs~iivTtR-~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1208)
.+.-+||+||+.... ...+ +.+...+.. ...|..||+||. .+. +...+.....+++++.+.++-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345689999995321 1111 233333321 123446888875 322 2223444567899999999999999
Q ss_pred HHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
.+.+...... --+++..-|++.+.|.--.+
T Consensus 273 ~~~~~~~~~~-------l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 273 RKMLEIEHGE-------LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHhcCCC-------CCHHHHHHHHhccccCHHHH
Confidence 8887543221 12567888888888754333
No 155
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0021 Score=75.75 Aligned_cols=157 Identities=13% Similarity=0.059 Sum_probs=94.3
Q ss_pred EEEEEEecCCchHHHHHHHHhccccccccc--ceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcC
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHF--ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~ 276 (1208)
..+.|+|..|+|||.|++++++. ....+ ..+++++. .++..++...+... ..+. +++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~~----f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGDS----FRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHHH----HHHHhhc
Confidence 35899999999999999999983 33222 23455543 33444444433211 1222 3233332
Q ss_pred CceEEEEecCCCCCc-cCh-HHHHHhhhCC-CCCcEEEEecCC---------hhHHhhhCCCCcEeCCCCChhHHHHHHH
Q 000962 277 QRFLLVLDDVWNEDY-RKW-EPLQQLLKQG-HKGSRVLVTSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1208)
Q Consensus 277 kr~LlVlDdvw~~~~-~~~-~~l~~~l~~~-~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1208)
-=+|||||+..... ..| +.+...+... ..|..|||||+. .++...+...-.++++..+.+.-..++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 34788999954322 122 2333333321 234568888875 2344556667789999999999999999
Q ss_pred HHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
+++...+.. --++++.-|++++.+..-.+
T Consensus 457 kka~~r~l~-------l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQLN-------APPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCCC-------CCHHHHHHHHHhccCCHHHH
Confidence 887554321 12567777888777654333
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0028 Score=69.99 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=114.5
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc-------------ccccceeEEEEec
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV-------------REHFESRMWVCVT 237 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~~ 237 (1208)
..++|.+..++.+...+..+. -.+..-++|..|+||+++|..+++..-- ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 357899999999999997654 2478999999999999999888763110 1122233444321
Q ss_pred CCCChHHHHHHHHHHcccCC--CCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEE
Q 000962 238 VDYDLPRILKGMIEFHSKME--QSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRV 310 (1208)
Q Consensus 238 ~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 310 (1208)
...+-..+-...++..+... ...-.++++ +.+.+.+ .+++-++|+|++...+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 11000000011111111000 011122332 2233333 3567799999997766666777888886555 4455
Q ss_pred EEecCC-hhHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 311 LVTSRT-ARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 311 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
|++|.+ ..+.... .-...+++.++++++..+.+........ .......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----------chhHHHHHHHHcCCCHHHHHHH
Confidence 555544 3333322 3346899999999999999887642211 0111357889999999765543
No 157
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.54 E-value=0.00037 Score=66.95 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=53.0
Q ss_pred EEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcC-Cce
Q 000962 201 IPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG-QRF 279 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~ 279 (1208)
|.|+|++|+||||+|+.+++. ...+ .+.++.+.-.+ .........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---ccccccccccc---------------ccccccccccccccccccccccce
Confidence 579999999999999999984 3221 23343322110 01122223333333332223 389
Q ss_pred EEEEecCCCCCccC-----------hHHHHHhhhCCC---CCcEEEEecCC
Q 000962 280 LLVLDDVWNEDYRK-----------WEPLQQLLKQGH---KGSRVLVTSRT 316 (1208)
Q Consensus 280 LlVlDdvw~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtR~ 316 (1208)
+|++||++...... ...+...+.... .+..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999995433333 344555554332 23567777776
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.49 E-value=0.0009 Score=82.29 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=85.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc-----cceeEEEEecCCCChHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-----FESRMWVCVTVDYDLPRI 245 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~~ 245 (1208)
+.++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++... +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH
Confidence 468999999999999887643 2234689999999999999998731 1111 23344421 11111
Q ss_pred HHHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCC--------CccChHHHHHhhhCCCCCcEEEEecCC
Q 000962 246 LKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNE--------DYRKWEPLQQLLKQGHKGSRVLVTSRT 316 (1208)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1208)
+ .+... ..+.+.....+.+.+ +.++.+|++|++..- ...+...+..++...+ .-+||-+|..
T Consensus 254 ----l---aG~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~ 324 (758)
T PRK11034 254 ----L---AGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTY 324 (758)
T ss_pred ----h---cccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCCh
Confidence 1 11100 111122222222222 356789999999521 1112222333332222 2345555543
Q ss_pred hhHHhh-------hCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 317 ARVSQI-------MGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 317 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
.+.... ..-...++++.++.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 332111 1122578999999999999988654
No 159
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.46 E-value=0.0031 Score=64.84 Aligned_cols=121 Identities=19% Similarity=0.265 Sum_probs=69.6
Q ss_pred cCCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
.-+.++|.|.+++.+++-...-- ...+..-+-+||..|.|||++++++.+...-++ . --|.|.+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G-L---RlIev~k---------- 88 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG-L---RLIEVSK---------- 88 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-c---eEEEECH----------
Confidence 34678999999988875432111 112355678899999999999999987321111 1 1122211
Q ss_pred HHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC-CccChHHHHHhhhCC---CCCcEEEEecCC
Q 000962 249 MIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQG---HKGSRVLVTSRT 316 (1208)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~---~~gs~iivTtR~ 316 (1208)
..-.++..+.+.|+. ...||+|++||.-=+ .......++..+..+ .+..-+|..|-+
T Consensus 89 ---------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 89 ---------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ---------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 112233444444443 467999999998422 224567777777532 233444444444
No 160
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.45 E-value=0.00049 Score=78.80 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=88.6
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..+.|.+..++++.+.+.-.-. -+-...+-+.++|++|+|||++|+.+++ .....|- .|..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~fi---~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATFL---RVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCEE---EEecch-----
Confidence 3567899998888876642110 0112345678999999999999999998 4444441 121111
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC--------ccC---hHHHHHhh---hC--CCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED--------YRK---WEPLQQLL---KQ--GHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~--------~~~---~~~l~~~l---~~--~~~g 307 (1208)
+.. ... ......+...+.....+.+.+|+||++...- ..+ ...+...+ .. ...+
T Consensus 253 -L~~----k~~-----Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LIQ----KYL-----GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hhh----hhc-----chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 100 1111222223333334677899999984210 000 11122222 11 1345
Q ss_pred cEEEEecCChhHHhhh-----CCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 308 SRVLVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 308 s~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
.+||+||...+..... ..+..+++...+.++..++|..++..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 6788888765443221 22457889999999999999977644
No 161
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00083 Score=65.52 Aligned_cols=88 Identities=23% Similarity=0.092 Sum_probs=47.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC-
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ- 277 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k- 277 (1208)
..+.|+|.+|+||||+|+.++.. .......++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999983 3332234556655544332222211 011111111122222223344444433
Q ss_pred ceEEEEecCCCCC
Q 000962 278 RFLLVLDDVWNED 290 (1208)
Q Consensus 278 r~LlVlDdvw~~~ 290 (1208)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999996643
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0033 Score=69.78 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=66.8
Q ss_pred CCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh-HHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCC
Q 000962 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNF 353 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 353 (1208)
+++-++|+|++...+......+...+.....++.+|+||.+.. +... ..-...+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 3444557799988777778888888876666777777777653 3322 223467899999999999888765311 1
Q ss_pred CccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 354 SSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 354 ~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
..+.+..++..++|.|+.+..+
T Consensus 182 --------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --------ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234567789999999765544
No 163
>PF14516 AAA_35: AAA-like domain
Probab=97.44 E-value=0.0051 Score=68.95 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=117.5
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC-----CChHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-----YDLPRI 245 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~~ 245 (1208)
+..|.|...-+++.+.+..++ ..+.|.|+-.+|||+|...+.+..+- ..+ .++++++..- .+....
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHH
Confidence 446788866677777776532 48999999999999999999873322 234 3467877652 234555
Q ss_pred HHHHHHHc----ccCCCC-------CCcHHHHHHHHHHHh---cCCceEEEEecCCCCCc--cChHHHHHhh----hCCC
Q 000962 246 LKGMIEFH----SKMEQS-------TSSISLLETRLLEFL---TGQRFLLVLDDVWNEDY--RKWEPLQQLL----KQGH 305 (1208)
Q Consensus 246 ~~~i~~~~----~~~~~~-------~~~~~~l~~~l~~~L---~~kr~LlVlDdvw~~~~--~~~~~l~~~l----~~~~ 305 (1208)
++.++..+ .....- ..........+.+++ .+++.+|++|+|+..-. .-.+.+...+ ....
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 55555443 322110 112223333444432 26899999999954211 1112233222 2111
Q ss_pred -----CCcEEE-Ee-cCChhHHh----hhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcC
Q 000962 306 -----KGSRVL-VT-SRTARVSQ----IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCK 374 (1208)
Q Consensus 306 -----~gs~ii-vT-tR~~~v~~----~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~ 374 (1208)
..-+.+ +. |+...... .+.....++|++++.+|...|...+-..-. ....++|...+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-----------~~~~~~l~~~tg 230 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-----------QEQLEQLMDWTG 230 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-----------HHHHHHHHHHHC
Confidence 111122 22 22111111 123345789999999999999887643211 223889999999
Q ss_pred CChHHHHHHHhhhccC
Q 000962 375 GLPLAVKAIAGFLRKY 390 (1208)
Q Consensus 375 g~PLai~~~~~~l~~~ 390 (1208)
|+|.-+..++..+...
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999653
No 164
>PRK08116 hypothetical protein; Validated
Probab=97.43 E-value=0.00057 Score=73.72 Aligned_cols=103 Identities=24% Similarity=0.349 Sum_probs=59.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
..+.++|..|+|||.||.++++. ...+-..+++++ ..+++..+........ ...... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 35889999999999999999994 333334456665 3445555544433211 112222 223334333
Q ss_pred eEEEEecCCCCCccChHH--HHHhhhCC-CCCcEEEEecCC
Q 000962 279 FLLVLDDVWNEDYRKWEP--LQQLLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 316 (1208)
||||||+..+...+|.. +...+... ..|..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995444445533 44444321 245569999875
No 165
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.42 E-value=0.0098 Score=74.95 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=86.3
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
...++|.+..+++|.+++.........+..++.++|++|+|||++|+.+++ .....|-. +.++...+..++
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~~---i~~~~~~~~~~i---- 389 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFVR---FSLGGVRDEAEI---- 389 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeEE---EeCCCcccHHHH----
Confidence 345889999999998876432111122345899999999999999999998 34333322 222222222221
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCcc----ChHHHHHhhh--------CCC-------CCcEE
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR----KWEPLQQLLK--------QGH-------KGSRV 310 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~----~~~~l~~~l~--------~~~-------~gs~i 310 (1208)
... ...........+.+.+... ..++-+|+||.++..... ....+...+. +.. .+.-+
T Consensus 390 ~g~--~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 390 RGH--RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred cCC--CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 110 0001112222333444333 233448899999554321 1122333221 110 22334
Q ss_pred EEecCChh-HHhh-hCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 311 LVTSRTAR-VSQI-MGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 311 ivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
|.||.... +... ......+++.+++.++-.+++..+.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 44554322 1111 1223578999999988888877654
No 166
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=0.00011 Score=89.33 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=90.8
Q ss_pred CceeEEEEEcccC--CCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCc
Q 000962 538 PETRHVSLLCKHV--EKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKL 615 (1208)
Q Consensus 538 ~~~r~lsl~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~ 615 (1208)
.+.+++.+.+... ..++......+|.|++|.+. +.. -..+-+...+.++++|+.||+|+++++.+ ..+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~--~~~--~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVIS--GRQ--FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEec--Cce--ecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 3456666655331 12333344578999999987 211 11223566788999999999999999988 67999999
Q ss_pred ccEEeecCCCccccc--hhhccCCcccEEecCCCccccccchh-------cccccccceeecccccc
Q 000962 616 LRYLDLSRTEIKVLP--NSICNLYNLQTLKLIGCIWIMELPKD-------LANLVKLRNLELEEMFW 673 (1208)
Q Consensus 616 Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~~-------i~~L~~L~~L~l~~n~~ 673 (1208)
|+.|.+++-.+..-. ..+.+|++|++||+|..... ..+.- -..||+||.||.+++.+
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence 999999987777433 46888999999999976532 22211 13588899999887643
No 167
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.0022 Score=71.72 Aligned_cols=138 Identities=20% Similarity=0.149 Sum_probs=86.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcC
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~ 276 (1208)
....+.|||..|.|||-|++++.+ ...........++++ .+....+++..+... -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 467899999999999999999999 555555533334433 233333443333221 123344444
Q ss_pred CceEEEEecCCCCCc-cCh-HHHHHhhhC-CCCCcEEEEecCC---------hhHHhhhCCCCcEeCCCCChhHHHHHHH
Q 000962 277 QRFLLVLDDVWNEDY-RKW-EPLQQLLKQ-GHKGSRVLVTSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1208)
Q Consensus 277 kr~LlVlDdvw~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1208)
.-=++++||++--.. +.| +.+...|.. ...|-.||+|++. +++...+...-.+++++.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 334889999954211 122 333333322 1233489999964 3556667777899999999999999999
Q ss_pred HHhccCC
Q 000962 345 KIAFNQG 351 (1208)
Q Consensus 345 ~~a~~~~ 351 (1208)
+++...+
T Consensus 255 kka~~~~ 261 (408)
T COG0593 255 KKAEDRG 261 (408)
T ss_pred HHHHhcC
Confidence 8775543
No 168
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0064 Score=73.23 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=76.4
Q ss_pred CccccchhhHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHH-
Q 000962 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL- 246 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~- 246 (1208)
..++|-+..++.+.+.+..... +++.+..+...+|+.|||||.||++++.. .-+.=+..+-++ +.+-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~D------MSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRID------MSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeec------hHHHHH
Confidence 4578999999998887764331 23566788999999999999999999872 111102223332 22222
Q ss_pred -HHHHHHcccCCCC--CCcHHHHHHHHHHHhcCCce-EEEEecCCCCCccChHHHHHhhhCC
Q 000962 247 -KGMIEFHSKMEQS--TSSISLLETRLLEFLTGQRF-LLVLDDVWNEDYRKWEPLQQLLKQG 304 (1208)
Q Consensus 247 -~~i~~~~~~~~~~--~~~~~~l~~~l~~~L~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (1208)
+.+.+-++.+..- -..-..+. +..+.++| +|.||+|...+++.++.+.+.|.++
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LT----EaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLT----EAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchh----HhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2223333333211 12223333 34456777 8889999888888888888888654
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.33 E-value=0.0023 Score=81.27 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=82.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccccc------ceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF------ESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~ 244 (1208)
+.+|||+.++++++..|.... ..-+.++|.+|+|||++|+.++.. +...+ ...+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 469999999999999997643 334568999999999999999873 32211 2223321 1111
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCCCc-------cChHHHHHhhhCCCCCcEEEEecCC
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNEDY-------RKWEPLQQLLKQGHKGSRVLVTSRT 316 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~~-------~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1208)
++. .......-...+...+.+.- .+++.+|++|++..-.. .+...+..+.-..+ .-++|-+|..
T Consensus 240 l~a-------~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~ 311 (852)
T TIGR03346 240 LIA-------GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTL 311 (852)
T ss_pred Hhh-------cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcH
Confidence 110 00000111112222222221 24689999999953210 01112222211112 2344544443
Q ss_pred hhHHhh-------hCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 317 ARVSQI-------MGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 317 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
.+.... ......+.++..+.++..+++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 332111 1223568899999999999887654
No 170
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.33 E-value=0.0017 Score=77.61 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=40.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+.++|-+..++++..|+..... +....+++.|+|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999875431 1233468999999999999999999973
No 171
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.32 E-value=3.7e-05 Score=69.49 Aligned_cols=85 Identities=22% Similarity=0.254 Sum_probs=58.6
Q ss_pred hccCCcccEEecCCCCCcccccccccC-CcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccce
Q 000962 587 FHQLKYLRLLDLSSSTLTVLPDSVEEL-KLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l-~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 665 (1208)
+.....|...+|++|.+..+|+.|... +.+..|+|++|.|..+|..+..++.|+.|+++.|. +...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHH
Confidence 344556666777777777777665543 36777777777777777777777777777777776 4556666766777777
Q ss_pred eeccccc
Q 000962 666 LELEEMF 672 (1208)
Q Consensus 666 L~l~~n~ 672 (1208)
|+..+|.
T Consensus 128 Lds~~na 134 (177)
T KOG4579|consen 128 LDSPENA 134 (177)
T ss_pred hcCCCCc
Confidence 7777663
No 172
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.28 E-value=0.0022 Score=74.63 Aligned_cols=166 Identities=17% Similarity=0.134 Sum_probs=89.2
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccc-----cceeEEEEecC
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-----FESRMWVCVTV 238 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~ 238 (1208)
..+.|.+..++++.+.+..+-. .+-...+-+.++|++|+|||++|+++++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 4577899999888877542110 01123456889999999999999999983 3322 12234444332
Q ss_pred CCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCCC-------ccCh-----HHHHHhhhCC-
Q 000962 239 DYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNED-------YRKW-----EPLQQLLKQG- 304 (1208)
Q Consensus 239 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~-------~~~~-----~~l~~~l~~~- 304 (1208)
. +++.. .... .......+....++.. .+++++|+||+++..- ..+. .++...+...
T Consensus 260 ~----eLl~k----yvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----ELLNK----YVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----hhccc----ccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 11110 0000 0011122222222221 3578999999995310 0111 2333333221
Q ss_pred -CCCcEEEEecCChhHHhh-----hCCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 305 -HKGSRVLVTSRTARVSQI-----MGIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 305 -~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
..+..||.||...+.... -..+..++++..+.++..++|..+..
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 134445556654432211 12345689999999999999998763
No 173
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.27 E-value=0.0028 Score=72.33 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=87.4
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
.++.|.+..++++.+.+..+-. -+-...+-+.++|++|+|||++|+.+++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------H
Confidence 4678988888888776532100 01134567889999999999999999983 33333 12211 1
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC------c----cC----hHHHHHhhhC--CCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED------Y----RK----WEPLQQLLKQ--GHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~------~----~~----~~~l~~~l~~--~~~g 307 (1208)
.+.... + ......+.+.+.......+.+|++|++..-- . .. +..+...+.. ...+
T Consensus 214 ~l~~k~---~------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFVQKY---L------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHHHHh---c------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111110 1 1111222233333334678999999984210 0 01 1122222221 2245
Q ss_pred cEEEEecCChhHHhh--h---CCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 308 SRVLVTSRTARVSQI--M---GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 308 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
..||+||...+.... . ..+..+++...+.++..++|..+...
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 678888875443221 1 23456889888988888888866543
No 174
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.25 E-value=0.0073 Score=70.22 Aligned_cols=211 Identities=17% Similarity=0.138 Sum_probs=129.6
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc------cccccceeEEEEecCCCChH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER------VREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~~~~~~~~~ 243 (1208)
+..+-+|+.+..+|...+..--.+ ......+.|.|.+|+|||..+..|.+... --..|+. +.|..-.-....
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHH
Confidence 345668999999988877543211 23345899999999999999999998321 1223543 455555666789
Q ss_pred HHHHHHHHHcccCCCC-CCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhC-CCCCcEEEEecCC--h-
Q 000962 244 RILKGMIEFHSKMEQS-TSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSRT--A- 317 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~--~- 317 (1208)
++...|...+...... ...++.+..++..- =+.+..++++|+++..-...-+.+...|.| ..++||++|.+=- .
T Consensus 473 ~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 9999999998876533 22333333333200 024568888998832211223556666655 4678887664321 1
Q ss_pred --------hHHhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 318 --------RVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 318 --------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
.|+..+| ...+..++.++++-.++...+..+.... .....+-+|++|+.--|-.-.|+.+.-++.
T Consensus 553 lPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f----~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAF----ENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred CHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhc----chhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1222222 2356778888888888777766554332 234455667777777777777776666554
No 175
>PRK10536 hypothetical protein; Provisional
Probab=97.24 E-value=0.0028 Score=66.05 Aligned_cols=135 Identities=16% Similarity=0.267 Sum_probs=75.5
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEe----cCC--C---C
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV----TVD--Y---D 241 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----~~~--~---~ 241 (1208)
..+.+|......+..++.+. .++.+.|.+|.|||+||.+++.+.-..+.|+.++-+.- .+. | +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34667888888888888643 38999999999999999998874322344554333211 110 0 1
Q ss_pred hHH----HHHHHHHHcccCCCCCCcHHHHHH--------HHHHHhcCCce---EEEEecCCCCCccChHHHHHhhhCCCC
Q 000962 242 LPR----ILKGMIEFHSKMEQSTSSISLLET--------RLLEFLTGQRF---LLVLDDVWNEDYRKWEPLQQLLKQGHK 306 (1208)
Q Consensus 242 ~~~----~~~~i~~~~~~~~~~~~~~~~l~~--------~l~~~L~~kr~---LlVlDdvw~~~~~~~~~l~~~l~~~~~ 306 (1208)
..+ .++-+.+.+..... ....+.+.. .-..+++++.+ +||+|.+.+.+. .++...+...+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCC
Confidence 111 11112222211000 000111100 01235566654 999999966543 555555666678
Q ss_pred CcEEEEecCCh
Q 000962 307 GSRVLVTSRTA 317 (1208)
Q Consensus 307 gs~iivTtR~~ 317 (1208)
+|+||+|--..
T Consensus 203 ~sk~v~~GD~~ 213 (262)
T PRK10536 203 NVTVIVNGDIT 213 (262)
T ss_pred CCEEEEeCChh
Confidence 99999886643
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.23 E-value=0.0031 Score=79.72 Aligned_cols=44 Identities=32% Similarity=0.510 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+.+|||+.++++++..|.... ..-+.++|.+|+|||++|+.++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997654 33466999999999999999988
No 177
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.23 E-value=0.0048 Score=70.78 Aligned_cols=119 Identities=21% Similarity=0.226 Sum_probs=75.5
Q ss_pred EEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCce
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRF 279 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~ 279 (1208)
++.|+|+-++||||+++.+... ..+. .+++...+......-+.+. ...+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999666652 2222 4555443322111111111 1111111112778
Q ss_pred EEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHH-----hh-hCCCCcEeCCCCChhHHHHHH
Q 000962 280 LLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVS-----QI-MGIRSPYLLEYLPEDQCWSIF 343 (1208)
Q Consensus 280 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-----~~-~~~~~~~~l~~L~~~~~~~lf 343 (1208)
.|+||.|.. ..+|+.....+.+.++. +|++|+-+..+. .. .|-...+++-||+-.|...+-
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999954 47899988888877766 899988875432 22 244567899999988877653
No 178
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.007 Score=70.24 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=68.9
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
+..-+|+++-+++|++++.-..-.+..+.+++..+|++|||||.+|+.++. .....|-. ++|..-.++.+|-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FSVGGMTDVAEIK--- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---EeccccccHHhhc---
Confidence 456689999999999998655444456788999999999999999999998 44444422 3555444444331
Q ss_pred HHHcccCC-CCCCcHHHHHHHHHHHhcCCceEEEEecCCC
Q 000962 250 IEFHSKME-QSTSSISLLETRLLEFLTGQRFLLVLDDVWN 288 (1208)
Q Consensus 250 ~~~~~~~~-~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~ 288 (1208)
+... ....-...+.+.|++. +..+=|+.+|.|+.
T Consensus 482 ----GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 482 ----GHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ----ccceeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 1111 1123334445555442 44567999999943
No 179
>PRK08181 transposase; Validated
Probab=97.19 E-value=0.0019 Score=69.18 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=56.9
Q ss_pred EEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCce
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRF 279 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~ 279 (1208)
-+.++|.+|+|||.||..+.+. .......++|+++ .+++..+..... ..........+ .+-=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----hcCC
Confidence 5899999999999999999873 3333334566643 445555433211 11222222222 2345
Q ss_pred EEEEecCCCCCccCh--HHHHHhhhCCCCCcEEEEecCCh
Q 000962 280 LLVLDDVWNEDYRKW--EPLQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 280 LlVlDdvw~~~~~~~--~~l~~~l~~~~~gs~iivTtR~~ 317 (1208)
|||+||+......+| ..+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999999965433333 23455554322223588888853
No 180
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=8.3e-05 Score=67.33 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=68.7
Q ss_pred cchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccch
Q 000962 576 LKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPK 655 (1208)
Q Consensus 576 ~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 655 (1208)
.|.+...++.+-..++.++.|+|++|.|+.+|..+..++.||.|+++.|.+...|..|..|.+|-.||..+|. ...+|.
T Consensus 62 ~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 62 DNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred cchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcH
Confidence 3444445555566777899999999999999999999999999999999999999999999999999998887 566776
Q ss_pred hc
Q 000962 656 DL 657 (1208)
Q Consensus 656 ~i 657 (1208)
.+
T Consensus 141 dl 142 (177)
T KOG4579|consen 141 DL 142 (177)
T ss_pred HH
Confidence 54
No 181
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.19 E-value=0.0084 Score=74.63 Aligned_cols=166 Identities=18% Similarity=0.177 Sum_probs=90.3
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
+...+|.++.+++|+.+|............++.++|++|+||||+|+.++. .....|-. +.++...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcCCCCCHHHhccch
Confidence 456899999999999888642211123456899999999999999999997 33333322 2333322222221000
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccC----hHHHHHhhhCC---------------CCCcEE
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK----WEPLQQLLKQG---------------HKGSRV 310 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~----~~~l~~~l~~~---------------~~gs~i 310 (1208)
+.. .......+...+... ....-+++||.+....... .+.+...+... -...-+
T Consensus 396 -~~~-----~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTY-----IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hcc-----CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 000 011122233333332 2234578999996543321 24455444321 123334
Q ss_pred EEecCChhHHhhh-CCCCcEeCCCCChhHHHHHHHHHh
Q 000962 311 LVTSRTARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 311 ivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
|.|+....+...+ +-...+++.+++++|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4555543332221 223578888999888888777665
No 182
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.19 E-value=0.0006 Score=70.69 Aligned_cols=36 Identities=36% Similarity=0.559 Sum_probs=30.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEe
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV 236 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 236 (1208)
-.++|+|..|.||||++..+.. .....|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4678999999999999999997 57778988777654
No 183
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.17 E-value=0.00018 Score=72.85 Aligned_cols=87 Identities=21% Similarity=0.232 Sum_probs=65.5
Q ss_pred ccCCcccEEecCCCCCc-----ccccccccCCcccEEeecCCCcc----ccc-------hhhccCCcccEEecCCCcccc
Q 000962 588 HQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIK----VLP-------NSICNLYNLQTLKLIGCIWIM 651 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~~~ 651 (1208)
..+..+..+|||+|.|. .+...|.+-.+|+.-+++.-... .+| +.+-+|++|++.+|+.|-+-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34888999999999886 34555777788999998864221 333 456789999999999998766
Q ss_pred ccchh----cccccccceeeccccccc
Q 000962 652 ELPKD----LANLVKLRNLELEEMFWF 674 (1208)
Q Consensus 652 ~lp~~----i~~L~~L~~L~l~~n~~~ 674 (1208)
..|.. |++-+.|.||.+++|.+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 66654 467788999999998553
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00014 Score=88.27 Aligned_cols=132 Identities=26% Similarity=0.167 Sum_probs=88.7
Q ss_pred CCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCc--ccccccccCCcccEEeecCCCccccchhhccCCc
Q 000962 561 SKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT--VLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYN 638 (1208)
Q Consensus 561 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 638 (1208)
-.+|++|.+. + ...-..+.+...-..++.|+.|.+++-.+. ++-.-..++++|+.||+|+++++.+ ..+++|+|
T Consensus 121 r~nL~~LdI~--G-~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDIS--G-SELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCcc--c-cchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 4678888876 2 111223344455567889999999887654 4445567889999999999999988 78999999
Q ss_pred ccEEecCCCcccc-ccchhcccccccceeecccccccccccCCc----cCCCCCcCcCCCceE
Q 000962 639 LQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPA----GIGKLTNLHNLHVFR 696 (1208)
Q Consensus 639 L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~----~i~~l~~L~~L~l~~ 696 (1208)
||+|.+++=.+.. .--..+.+|++|++||+|.........+.. .-..|++|+.|+.++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 9999988644221 111357889999999999764322211111 112367788887765
No 185
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.11 E-value=0.0029 Score=66.75 Aligned_cols=103 Identities=24% Similarity=0.297 Sum_probs=58.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
...+.++|.+|+|||+||.++++. ....-..++++++ .+++..+-..... ....... +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 347899999999999999999984 3333345566643 4444444333221 1112222 333344 3
Q ss_pred ceEEEEecCCCCCccChHH--HHHhhhCC-CCCcEEEEecCC
Q 000962 278 RFLLVLDDVWNEDYRKWEP--LQQLLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 316 (1208)
.=+||+||+......+|+. +...+... ...-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889997665566653 44444322 112337777774
No 186
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.019 Score=63.08 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=101.6
Q ss_pred hhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc-----eeEEEEecCCCChHHHHHHHHHH
Q 000962 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-----SRMWVCVTVDYDLPRILKGMIEF 252 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~wv~~~~~~~~~~~~~~i~~~ 252 (1208)
...+.+...+..+. -...+.++|+.|+||+++|..++...--..... ++-|+.....+|...+... -+.
T Consensus 11 ~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNR 84 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCc
Confidence 34556666665443 355789999999999999988876321111000 0001111111111000000 000
Q ss_pred cccCCCCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhhh-CC
Q 000962 253 HSKMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIM-GI 325 (1208)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~ 325 (1208)
-+......-.++++.+ +.+.+ .+++=++|+|++...+...-..+...+.....++.+|++|... .+...+ .-
T Consensus 85 ~~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 85 TGDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 0000000112233222 22222 2566799999997766566677777777666677777777653 333222 23
Q ss_pred CCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 326 RSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 326 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
...+.+.+++.+++.+.+.... . . ++.+..++..++|.|+.+..+.
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~~----~-----~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQG----V-----S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHcC----C-----C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 3678899999999988876531 1 0 2336678999999998765443
No 187
>PRK12377 putative replication protein; Provisional
Probab=97.10 E-value=0.0012 Score=69.72 Aligned_cols=102 Identities=25% Similarity=0.201 Sum_probs=57.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
...+.|+|..|+|||.||.++++. .......++++++. +++..+-..... ......+ .+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~----l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF----LQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH----HHHh-cC
Confidence 357899999999999999999983 33334445666553 344444333221 1111222 2222 35
Q ss_pred ceEEEEecCCCCCccChH--HHHHhhhCCC-CCcEEEEecCC
Q 000962 278 RFLLVLDDVWNEDYRKWE--PLQQLLKQGH-KGSRVLVTSRT 316 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~--~l~~~l~~~~-~gs~iivTtR~ 316 (1208)
-=||||||+.......|. .+...+.... +.--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999999544334453 3444443321 12237778774
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.014 Score=65.46 Aligned_cols=166 Identities=10% Similarity=0.058 Sum_probs=89.9
Q ss_pred cccc-chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 172 NVFG-RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 172 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
.++| -+..++.+...+.... -.+.+.++|+.|+||||+|+.+++..--....... .+....+-..+.....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcCHHHHHHhcCCC
Confidence 4566 5666777777776543 35678999999999999999887631111100000 0000000000000000
Q ss_pred HHc--ccCCCCCCcHHHHHHHHHHH----hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhhh
Q 000962 251 EFH--SKMEQSTSSISLLETRLLEF----LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIM 323 (1208)
Q Consensus 251 ~~~--~~~~~~~~~~~~l~~~l~~~----L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 323 (1208)
-.+ ..........+++.+.+... ..+++=++|+|++...+......+...+.....++.+|++|.+. .+....
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 000 00000112223333222111 23455679999997666566777888887766777777777653 333222
Q ss_pred -CCCCcEeCCCCChhHHHHHHHH
Q 000962 324 -GIRSPYLLEYLPEDQCWSIFKK 345 (1208)
Q Consensus 324 -~~~~~~~l~~L~~~~~~~lf~~ 345 (1208)
.....+++.++++++..+.+..
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH
Confidence 2346889999999998887764
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.06 E-value=0.01 Score=64.25 Aligned_cols=122 Identities=24% Similarity=0.246 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH-------
Q 000962 177 DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM------- 249 (1208)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i------- 249 (1208)
..-++++..++..+. -|.++|.+|+|||++|+.+++ ..... .+++++.......+++...
T Consensus 8 ~~l~~~~l~~l~~g~--------~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dllg~~~~~~~~~ 74 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--------PVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLVGSYAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHhcCC--------eEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHhhhhcccchhh
Confidence 344566666665432 456899999999999999986 33222 3455665555444443221
Q ss_pred -----HHHcccCCCC---CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCC----------------C
Q 000962 250 -----IEFHSKMEQS---TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG----------------H 305 (1208)
Q Consensus 250 -----~~~~~~~~~~---~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~----------------~ 305 (1208)
.......... ..... .+.... .+...+++|++...+.+.+..+...+..+ +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g----~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~ 149 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDN----RLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVH 149 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCc----hHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecC
Confidence 1000000000 00000 111111 23468999999776666666666655321 1
Q ss_pred CCcEEEEecCC
Q 000962 306 KGSRVLVTSRT 316 (1208)
Q Consensus 306 ~gs~iivTtR~ 316 (1208)
++.+||+|+..
T Consensus 150 ~~frvIaTsN~ 160 (262)
T TIGR02640 150 PEFRVIFTSNP 160 (262)
T ss_pred CCCEEEEeeCC
Confidence 35678888774
No 190
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.05 E-value=0.03 Score=57.48 Aligned_cols=181 Identities=16% Similarity=0.214 Sum_probs=106.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEec-CCCChHHHHHHHHHHcccCCCC--CCcHHHHHHHHHHHh
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT-VDYDLPRILKGMIEFHSKMEQS--TSSISLLETRLLEFL 274 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~l~~~L 274 (1208)
..++.++|.-|.|||.+++..... ..+ +.++-|.+. ...+...+...+...+...... ..-..+..+.+....
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 569999999999999999955442 111 222223333 3345666777777777662211 112233333343333
Q ss_pred -cCCc-eEEEEecCCCCCccChHHHHHhhhCCCCCc---EEEEecCC---h----hHHhhhC--CCCcEeCCCCChhHHH
Q 000962 275 -TGQR-FLLVLDDVWNEDYRKWEPLQQLLKQGHKGS---RVLVTSRT---A----RVSQIMG--IRSPYLLEYLPEDQCW 340 (1208)
Q Consensus 275 -~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~iivTtR~---~----~v~~~~~--~~~~~~l~~L~~~~~~ 340 (1208)
+++| ..+++||......+..+.+.-...-...++ +|+..-.. + .+....+ ..-.|++.|++.++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 4777 899999997766566666655443211112 23332221 1 1111111 1123899999999888
Q ss_pred HHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhh
Q 000962 341 SIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGF 386 (1208)
Q Consensus 341 ~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~ 386 (1208)
.++..+..+...+. +---.+....|..+..|.|.+|..++..
T Consensus 207 ~yl~~~Le~a~~~~----~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 207 LYLRHRLEGAGLPE----PLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHhccCCCc----ccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 88887776553321 1122456678899999999999887753
No 191
>CHL00176 ftsH cell division protein; Validated
Probab=97.04 E-value=0.006 Score=73.78 Aligned_cols=177 Identities=17% Similarity=0.212 Sum_probs=95.9
Q ss_pred CccccchhhHHHHH---HHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERIL---HMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~---~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
.+++|.++.++++. .++..... -+....+-|.++|++|+|||++|+.++.. .... |+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccH----HH
Confidence 45778776665554 44443321 01122456899999999999999999873 2222 333321 11
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC----------ccChHH-HHHhh---hC--CCCCc
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKWEP-LQQLL---KQ--GHKGS 308 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~----------~~~~~~-l~~~l---~~--~~~gs 308 (1208)
+.. ... ......+...+.+.....+.+|++||++.-. ...+.. +...+ .. ...+-
T Consensus 252 f~~----~~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVE----MFV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHH----Hhh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 110 000 0112233344444456778999999994321 011222 22222 11 23455
Q ss_pred EEEEecCChhHHhh-h----CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCC
Q 000962 309 RVLVTSRTARVSQI-M----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG 375 (1208)
Q Consensus 309 ~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g 375 (1208)
.||.||...+.... + ..+..+.+...+.++-.++++.++..... ........+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~--------~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL--------SPDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc--------chhHHHHHHHhcCCC
Confidence 67777766443221 1 23457888889999999999887754221 112234567777777
No 192
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.00014 Score=74.59 Aligned_cols=102 Identities=25% Similarity=0.202 Sum_probs=68.9
Q ss_pred cccEEecCCCCCccccc--cc-ccCCcccEEeecCCCcc---ccchhhccCCcccEEecCCCccc---cccchhcccccc
Q 000962 592 YLRLLDLSSSTLTVLPD--SV-EELKLLRYLDLSRTEIK---VLPNSICNLYNLQTLKLIGCIWI---MELPKDLANLVK 662 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~--~i-~~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~~~---~~lp~~i~~L~~ 662 (1208)
-+..|.+.++.|...-+ .| ....+++.|||.+|.|+ ++-.-+.+|+.|++|+|+.|.+. +.+| ..+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 34466667776653322 23 34678999999999987 45556788999999999988743 2233 34568
Q ss_pred cceeecccccccccccCCccCCCCCcCcCCCceEe
Q 000962 663 LRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 663 L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
|+.|-|.+.++.. ......+..++.++.|+++.+
T Consensus 123 l~~lVLNgT~L~w-~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 123 LRVLVLNGTGLSW-TQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred eEEEEEcCCCCCh-hhhhhhhhcchhhhhhhhccc
Confidence 8999888876532 333445566777777777654
No 193
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.02 E-value=0.006 Score=76.35 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=71.7
Q ss_pred CCccccchhhHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1208)
...++|.+..++.+...+..... .......++.++|+.|+|||+||+.++.. . +...+.++.+.-....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc---
Confidence 34678888888888877764211 11234567899999999999999999872 2 2333455544321111
Q ss_pred HHHHHHcccCCC--CCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhC
Q 000962 247 KGMIEFHSKMEQ--STSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ 303 (1208)
Q Consensus 247 ~~i~~~~~~~~~--~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 303 (1208)
.+...++.... .......+...++. ...-+++||+++..+.+.+..+...+..
T Consensus 525 -~~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 -TVSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -cHHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11112222111 11122233333321 2345999999988877778888887754
No 194
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.02 E-value=0.016 Score=69.17 Aligned_cols=179 Identities=14% Similarity=0.143 Sum_probs=93.0
Q ss_pred CccccchhhHHHHHHHHc---CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLL---SDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
.+++|.+..++++.+++. .... .+....+-+.++|++|+|||++|+.++.. .... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HH
Confidence 467888877766654432 2110 01122345889999999999999999973 2222 222221 11
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC----------ccChHHH----HHhhhC--CCCCc
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKWEPL----QQLLKQ--GHKGS 308 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~----------~~~~~~l----~~~l~~--~~~gs 308 (1208)
+.. ... ......+...+.......+.+|++||++.-. ...+... ...+.. ...+-
T Consensus 124 ~~~----~~~-----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVE----MFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHH----HHh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 111 110 1112233333444444667899999994310 0112222 111211 22344
Q ss_pred EEEEecCChhH-----HhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 309 RVLVTSRTARV-----SQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 309 ~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
.||.||...+. ......+..+.+...+.++-.++|..+....... . ......+++.+.|.-
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~----~----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA----P----DVDLKAVARRTPGFS 260 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC----c----chhHHHHHHhCCCCC
Confidence 56667765432 1111234578899899988888988776432211 1 112346777777643
No 195
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.01 E-value=0.0097 Score=58.95 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=77.8
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc------------------ccceeEEEEe
Q 000962 175 GRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE------------------HFESRMWVCV 236 (1208)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~~ 236 (1208)
|-+...+.+.+.+.... -...+.++|..|+||+|+|..+++.---.. ......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45566777777776543 345789999999999999998887311111 1122233322
Q ss_pred cCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEE
Q 000962 237 TVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL 311 (1208)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (1208)
.... ..-..+++. .+.+++ .+++=++|+||+.......+..+...+.....++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2110 011233333 233332 2456689999998877788889999998888889999
Q ss_pred EecCChh-HHhh-hCCCCcEeCCCC
Q 000962 312 VTSRTAR-VSQI-MGIRSPYLLEYL 334 (1208)
Q Consensus 312 vTtR~~~-v~~~-~~~~~~~~l~~L 334 (1208)
++|++.. +... ..-...+.+.++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEECChHHChHHHHhhceEEecCCC
Confidence 9888754 3222 222345555544
No 196
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.00 E-value=0.0039 Score=68.53 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=70.6
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcc
Q 000962 175 GRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1208)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1208)
+|....+...+++..-. .....+-+.++|..|+|||.||.++++... +..+ .+.++++. .++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHHHHHh
Confidence 45555555556665322 111345789999999999999999999432 2233 35566553 45555544432
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHH--HHHhh-hCC-CCCcEEEEecCC
Q 000962 255 KMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEP--LQQLL-KQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 255 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iivTtR~ 316 (1208)
.. +.... +.. + .+-=||||||+--+....|.. +...+ ... ..+-.+|+||-.
T Consensus 205 ~~-----~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 12222 222 2 245699999997666677753 54443 322 234458888874
No 197
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.99 E-value=0.012 Score=58.70 Aligned_cols=44 Identities=30% Similarity=0.371 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++||-++.++++.-.-.++. .+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~gn------mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN------MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCceEeeCCCCCchhhHHHHHHH
Confidence 468999999999877766544 67788999999999999888876
No 198
>PRK08118 topology modulation protein; Reviewed
Probab=96.99 E-value=0.00035 Score=69.59 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=27.7
Q ss_pred EEEEEecCCchHHHHHHHHhcccccc-cccceeEE
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVR-EHFESRMW 233 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 233 (1208)
.|.|+|++|+||||||+++++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854444 55777776
No 199
>PRK06526 transposase; Provisional
Probab=96.97 E-value=0.0018 Score=69.05 Aligned_cols=100 Identities=24% Similarity=0.309 Sum_probs=53.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
.-+.|+|++|+|||+||..+.... .+..+ .+.|+ +..+++..+..... .. .+...+.+ + .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a-~~~g~-~v~f~------t~~~l~~~l~~~~~-----~~---~~~~~l~~-l-~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA-CQAGH-RVLFA------TAAQWVARLAAAHH-----AG---RLQAELVK-L-GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH-HHCCC-chhhh------hHHHHHHHHHHHHh-----cC---cHHHHHHH-h-ccC
Confidence 358999999999999999998732 22222 23343 23344444432211 11 12222332 2 234
Q ss_pred eEEEEecCCCCCccChH--HHHHhhhCC-CCCcEEEEecCCh
Q 000962 279 FLLVLDDVWNEDYRKWE--PLQQLLKQG-HKGSRVLVTSRTA 317 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 317 (1208)
-+||+||+.......+. .+...+... ..++ +|+||..+
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 68999999644322332 344444322 2344 88888854
No 200
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.027 Score=61.93 Aligned_cols=177 Identities=12% Similarity=0.045 Sum_probs=101.7
Q ss_pred hhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc-cc-e-----eEEEEecCCCChHHHHHHHH
Q 000962 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-FE-S-----RMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~-----~~wv~~~~~~~~~~~~~~i~ 250 (1208)
...+++.+.+..+. -...+-++|+.|+||+++|+.++...--... .. | .-++.....+|...+
T Consensus 10 ~~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (319)
T PRK06090 10 PVWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI----- 79 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 34455666665433 3568899999999999999988763110000 00 0 001111111111000
Q ss_pred HHcccCC-CCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhh-
Q 000962 251 EFHSKME-QSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI- 322 (1208)
Q Consensus 251 ~~~~~~~-~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~- 322 (1208)
.... ...-.++++.+ +.+.+ .+++=++|+|++...+......+...+.....++.+|++|.+. .+...
T Consensus 80 ---~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 80 ---KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred ---ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 0000 01122333322 22222 2455689999998777677888888887767777777766654 34332
Q ss_pred hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 323 MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 323 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
..-...+.+.+++++++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~----~-----~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQG----I-----T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcC----C-----c------hHHHHHHHcCCCHHHHHHH
Confidence 2334688999999999988876531 1 1 1346788999999977654
No 201
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0031 Score=67.76 Aligned_cols=100 Identities=24% Similarity=0.267 Sum_probs=53.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
..+.|+|..|+|||+||..++.... ...+ .+.+++ ..++...+...... .. +...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 4677999999999999999976322 2222 233443 23333333221111 11 222222222 344
Q ss_pred eEEEEecCCCCCccChH--HHHHhhhCC-CCCcEEEEecCC
Q 000962 279 FLLVLDDVWNEDYRKWE--PLQQLLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 316 (1208)
-++|+||+.......+. .+...+... ..++ +||||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999654333333 344444322 2344 8888885
No 202
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.96 E-value=0.0031 Score=71.92 Aligned_cols=151 Identities=17% Similarity=0.279 Sum_probs=83.6
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH-H
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM-I 250 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i-~ 250 (1208)
.++||++.++.+...+..+. -|.|.|.+|+|||++|+.+.........|.. +.+.-. ...+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHHH
Confidence 57999999999999888654 5789999999999999999973222223331 111100 112222111 1
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcC---CceEEEEecCCCCCccChHHHHHhhhCCC---------CCcEEEEecCChh
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTG---QRFLLVLDDVWNEDYRKWEPLQQLLKQGH---------KGSRVLVTSRTAR 318 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~---kr~LlVlDdvw~~~~~~~~~l~~~l~~~~---------~gs~iivTtR~~~ 318 (1208)
...... ..+.+..++ +--++++|+++.........+..++.... -..++||++.++
T Consensus 89 ~~~~~~-----------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~- 156 (498)
T PRK13531 89 QALKDE-----------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE- 156 (498)
T ss_pred hhhhhc-----------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-
Confidence 110000 001111111 11289999999887777777777773221 123565555543
Q ss_pred HHh-------hh-CCCCcEeCCCCCh-hHHHHHHHHH
Q 000962 319 VSQ-------IM-GIRSPYLLEYLPE-DQCWSIFKKI 346 (1208)
Q Consensus 319 v~~-------~~-~~~~~~~l~~L~~-~~~~~lf~~~ 346 (1208)
+.. .+ .-.-.+.++++++ ++-.+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 11 1123577889975 4447777653
No 203
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.041 Score=60.71 Aligned_cols=176 Identities=10% Similarity=0.057 Sum_probs=101.8
Q ss_pred hHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccccc---ce-----eEEEEecCCCChHHHHHHHH
Q 000962 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF---ES-----RMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..+.+...+..+. -...+.++|+.|+||+++|+.++...--.... .| +-++.....+|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 3455666665433 34678899999999999999988731110100 00 001111111221110
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhh-h
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI-M 323 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~-~ 323 (1208)
.......-.++++.+ +.+.+ .+++=++|+|++...+......+...+.....++.+|++|.+. .+... .
T Consensus 80 ---~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ---EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ---ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 000011122333332 22222 3566688899998777677788888887777777777777654 34322 2
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
.-...+.+.++++++..+.+....... ...+...+..++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~~------------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSAE------------ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhccC------------hHHHHHHHHHcCCCHHHH
Confidence 234688999999999998887654210 123556788899999644
No 204
>PHA00729 NTP-binding motif containing protein
Probab=96.91 E-value=0.0061 Score=62.57 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...|.|+|.+|+||||||..+.+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 205
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.88 E-value=0.0011 Score=66.56 Aligned_cols=99 Identities=27% Similarity=0.420 Sum_probs=51.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
.-+.++|..|+|||.||..+.+.. ++..+ .+.|+.+ .+++..+-. ... ......... .+. +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~------~~L~~~l~~----~~~-~~~~~~~~~----~l~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITA------SDLLDELKQ----SRS-DGSYEELLK----RLK-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH------HHHHHHHHC----CHC-CTTHCHHHH----HHH-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeec------Cceeccccc----ccc-ccchhhhcC----ccc-cc
Confidence 468999999999999999998742 23333 3566654 344444432 211 112222222 233 23
Q ss_pred eEEEEecCCCCCccChH--HHHHhhhCC-CCCcEEEEecCC
Q 000962 279 FLLVLDDVWNEDYRKWE--PLQQLLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 316 (1208)
=||||||+-.+...+|. .+...+... .++ .+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 57889999655443442 222222221 123 58888884
No 206
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.015 Score=65.11 Aligned_cols=161 Identities=20% Similarity=0.314 Sum_probs=94.7
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh
Q 000962 195 EDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1208)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L 274 (1208)
......+.+.|++|+|||+||.+++. ...|+.+--++....... .+......+...+...-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~---------------sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGL---------------SESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCc---------------cHHHHHHHHHHHHHHhh
Confidence 45677888999999999999999985 456775444332211110 01122233444445555
Q ss_pred cCCceEEEEecCCCCCccChHHHH------------HhhhC-CCCCcEE--EEecCChhHHhhhCC----CCcEeCCCCC
Q 000962 275 TGQRFLLVLDDVWNEDYRKWEPLQ------------QLLKQ-GHKGSRV--LVTSRTARVSQIMGI----RSPYLLEYLP 335 (1208)
Q Consensus 275 ~~kr~LlVlDdvw~~~~~~~~~l~------------~~l~~-~~~gs~i--ivTtR~~~v~~~~~~----~~~~~l~~L~ 335 (1208)
+..--.||+||+. ...+|-.+. -.+.. ..+|-|. +-||....|...|+- ...|.++.++
T Consensus 596 kS~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 6677899999993 334444332 22322 2345554 447777788877753 3578899888
Q ss_pred h-hHHHHHHHHHh-ccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 336 E-DQCWSIFKKIA-FNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 336 ~-~~~~~lf~~~a-~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
. ++..+.++..- |.+ .+.+.++.+.+.+| +-.+|+-+-.++
T Consensus 674 ~~~~~~~vl~~~n~fsd---------~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFSD---------DEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred chHHHHHHHHHccCCCc---------chhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7 77777776543 432 33455667777776 333344444433
No 207
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0099 Score=69.51 Aligned_cols=164 Identities=17% Similarity=0.242 Sum_probs=95.4
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
+.+-+|.++.+++|++.|.-......-+-.++.+||++|||||.|++.++. .....|-. ++++.-.+..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHh----
Confidence 456689999999999988543322234567999999999999999999998 45555532 233333332222
Q ss_pred HHHcccCCCC--CCcHHHHHHHHHHHhcCCceEEEEecCCCCCc----cChHHHHHhhh-CCC------------CCcEE
Q 000962 250 IEFHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDY----RKWEPLQQLLK-QGH------------KGSRV 310 (1208)
Q Consensus 250 ~~~~~~~~~~--~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~----~~~~~l~~~l~-~~~------------~gs~i 310 (1208)
.+.... +.-...+.+.+++. +.+.=+++||.++.... +.-..+...|. ..+ -=|.|
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 111111 22233344444432 56778999999954321 11122332221 111 11444
Q ss_pred E-EecCC-hh-H-HhhhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 311 L-VTSRT-AR-V-SQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 311 i-vTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
+ |||-+ -+ + +.......++++.+.+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 44443 22 2 2233445789999999999888777665
No 208
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.84 E-value=0.0033 Score=79.14 Aligned_cols=138 Identities=18% Similarity=0.182 Sum_probs=78.7
Q ss_pred CCccccchhhHHHHHHHHcCCC---CCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDE---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1208)
...++|.+..++.+.+.+.... ..+.....++.++|+.|+|||.+|+.++.. .-+.....+-++++.-.. -
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~----~ 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE----A 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh----h
Confidence 3578999999999988875421 112345668999999999999999988863 211112222222221110 0
Q ss_pred HHHHHHcccCCCC-C-CcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEe
Q 000962 247 KGMIEFHSKMEQS-T-SSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVT 313 (1208)
Q Consensus 247 ~~i~~~~~~~~~~-~-~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 313 (1208)
+.+.+-++..... . .....+...+++ ...-+|+||++...++..++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1111112211111 1 111233344432 455699999998777777777877776543 44556666
Q ss_pred cCC
Q 000962 314 SRT 316 (1208)
Q Consensus 314 tR~ 316 (1208)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 664
No 209
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.83 E-value=0.011 Score=74.72 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=77.0
Q ss_pred CCccccchhhHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1208)
...++|.+..++.+...+..... .++.+..++.++|+.|+|||++|+.+++. ....-...+.+.++.-.. ...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~~- 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KHS- 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hhh-
Confidence 34688999998888887754210 11233458899999999999999999872 211112234444432111 111
Q ss_pred HHHHHHcccCCCC-CC-cHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEe
Q 000962 247 KGMIEFHSKMEQS-TS-SISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVT 313 (1208)
Q Consensus 247 ~~i~~~~~~~~~~-~~-~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 313 (1208)
+.+-++..... .. ....+...++ ....-+|+|||+...+...+..+...+..+. ..+-||+|
T Consensus 643 --~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 643 --VSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred --HHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 11112211111 11 1122222222 1233699999998777777888887775431 22337778
Q ss_pred cCC
Q 000962 314 SRT 316 (1208)
Q Consensus 314 tR~ 316 (1208)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 775
No 210
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.83 E-value=0.0037 Score=79.25 Aligned_cols=137 Identities=13% Similarity=0.168 Sum_probs=78.2
Q ss_pred CCccccchhhHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1208)
...++|-+..++.+...+..... ....+..++.++|+.|+|||+||+.+++. .-..-...+-++.+.-.....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~-- 583 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHT-- 583 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhcccccc--
Confidence 35688999999999887753221 12334567789999999999999999872 211112233333333211111
Q ss_pred HHHHHHcccCCC-C-CCcHHHHHHHHHHHhcCCc-eEEEEecCCCCCccChHHHHHhhhCC-----------CCCcEEEE
Q 000962 247 KGMIEFHSKMEQ-S-TSSISLLETRLLEFLTGQR-FLLVLDDVWNEDYRKWEPLQQLLKQG-----------HKGSRVLV 312 (1208)
Q Consensus 247 ~~i~~~~~~~~~-~-~~~~~~l~~~l~~~L~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iiv 312 (1208)
+...++.... . ......+.. .++.++ -+++||++...+.+.+..+...+..+ ...+-||+
T Consensus 584 --~~~l~g~~~gyvg~~~~~~l~~----~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 584 --VSKLIGSPPGYVGYNEGGQLTE----AVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred --HHHhcCCCCcccCcCccchHHH----HHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 1111221110 0 112223333 334444 58999999888777788888877653 13455666
Q ss_pred ecCC
Q 000962 313 TSRT 316 (1208)
Q Consensus 313 TtR~ 316 (1208)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 6664
No 211
>PRK06921 hypothetical protein; Provisional
Probab=96.82 E-value=0.0033 Score=67.75 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=55.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccc-cceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREH-FESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~ 276 (1208)
..-+.++|..|+|||.||.++++. +... -..+++++.. +++..+.... ......+ +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~-~~~~- 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKL-NRMK- 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHH-HHhc-
Confidence 457899999999999999999983 3332 3445676642 2333332211 1111222 2222
Q ss_pred CceEEEEecCC-----CCCccChH--HHHHhhhCC-CCCcEEEEecCC
Q 000962 277 QRFLLVLDDVW-----NEDYRKWE--PLQQLLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 277 kr~LlVlDdvw-----~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 316 (1208)
+-=||||||+. .+...+|. .+...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34699999992 22223454 344444322 123458888874
No 212
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.82 E-value=0.0022 Score=62.71 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=57.7
Q ss_pred cccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCCC-CCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEe
Q 000962 970 QRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRW-PNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLS 1048 (1208)
Q Consensus 970 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~-~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~ 1048 (1208)
.....++|++|.... ...|+.++.|..|.+++|.+...-|.+ ..+++|+.|.+.+|. +..+.....+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 455667777775332 234667788888888888877766665 567788888888877 55555545667777888887
Q ss_pred ecCCC
Q 000962 1049 IRGCP 1053 (1208)
Q Consensus 1049 l~~~~ 1053 (1208)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 77775
No 213
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.79 E-value=0.0057 Score=77.75 Aligned_cols=137 Identities=16% Similarity=0.198 Sum_probs=79.3
Q ss_pred CccccchhhHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
..++|.+..++.+...+..... .+.....++.++|+.|+|||++|+.++.. ....-...+.++++.-..... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~-~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS-V- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch-H-
Confidence 4689999999999888865321 11234567889999999999999999973 222122333444443211111 1
Q ss_pred HHHHHcccCCC-CC-CcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEec
Q 000962 248 GMIEFHSKMEQ-ST-SSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTS 314 (1208)
Q Consensus 248 ~i~~~~~~~~~-~~-~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (1208)
.+.++.... .. .....+...++. ....+|+||++...+...+..+...+..+. ..+-||+||
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 111221111 01 112233333322 233499999998887788888888875431 234477777
Q ss_pred CC
Q 000962 315 RT 316 (1208)
Q Consensus 315 R~ 316 (1208)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 64
No 214
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.79 E-value=0.0066 Score=61.52 Aligned_cols=37 Identities=32% Similarity=0.671 Sum_probs=29.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEE
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC 235 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (1208)
+..+|.++|+.|+||||+|+.++. +....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456999999999999999999998 5555555555553
No 215
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.018 Score=61.74 Aligned_cols=188 Identities=17% Similarity=0.161 Sum_probs=106.2
Q ss_pred ccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 172 NVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
.+=|-++.+++|.+...-+-. -+-.+.+=|.++|++|.|||-||++|++ +....| +.|.. .+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg----SE 220 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG----SE 220 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc----HH
Confidence 455778888888776643311 1234567788999999999999999999 445444 33321 12
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhc-CCceEEEEecCCCC-----------CccChHHHHHhh---hCC--CCC
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLT-GQRFLLVLDDVWNE-----------DYRKWEPLQQLL---KQG--HKG 307 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdvw~~-----------~~~~~~~l~~~l---~~~--~~g 307 (1208)
+ .+..-+ +-..+.+.+.+.-+ .....|++|.++.- +.+.-..+...+ ... ...
T Consensus 221 l----VqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 L----VQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred H----HHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 2 222111 11234444444443 56899999988321 001112223333 222 234
Q ss_pred cEEEEecCChhHHhh-----hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh----H
Q 000962 308 SRVLVTSRTARVSQI-----MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP----L 378 (1208)
Q Consensus 308 s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P----L 378 (1208)
-|||..|-..++... -.-+..+++..-+.+.-.++|+-|+-...-. ..-+++ .+++.|.|.- -
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~----~dvd~e----~la~~~~g~sGAdlk 362 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA----DDVDLE----LLARLTEGFSGADLK 362 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc----cCcCHH----HHHHhcCCCchHHHH
Confidence 689987776554332 2335678888667777777888777544321 122333 4555666554 5
Q ss_pred HHHHHHhhhc
Q 000962 379 AVKAIAGFLR 388 (1208)
Q Consensus 379 ai~~~~~~l~ 388 (1208)
|+.+=|++++
T Consensus 363 aictEAGm~A 372 (406)
T COG1222 363 AICTEAGMFA 372 (406)
T ss_pred HHHHHHhHHH
Confidence 5666677663
No 216
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.69 E-value=0.0047 Score=62.71 Aligned_cols=130 Identities=21% Similarity=0.316 Sum_probs=63.0
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC--CCh----HHH----
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD--YDL----PRI---- 245 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~----~~~---- 245 (1208)
+..+-...++.|.. ..++.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.-. .++ .+.
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 44455555666653 458999999999999999988876555688888887743221 000 000
Q ss_pred ---HHHHHHHcccCCCCCCcHHHHHHH------HHHHhcCC---ceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEe
Q 000962 246 ---LKGMIEFHSKMEQSTSSISLLETR------LLEFLTGQ---RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVT 313 (1208)
Q Consensus 246 ---~~~i~~~~~~~~~~~~~~~~l~~~------l~~~L~~k---r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 313 (1208)
+.-+.+.+..-. .....+.+.+. -..+++|+ ...||+|++-+.+. .++...+...+.|||||++
T Consensus 77 ~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~skii~~ 152 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSKIIIT 152 (205)
T ss_dssp -TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-EEEEE
T ss_pred HHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcEEEEe
Confidence 111111111110 11122222110 01234454 46999999965443 4555556667789999998
Q ss_pred cCCh
Q 000962 314 SRTA 317 (1208)
Q Consensus 314 tR~~ 317 (1208)
=-..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 6543
No 217
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.67 E-value=0.0086 Score=66.17 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc-ccce-eEEEEecCCC-ChHHHHHHHHHHcccC
Q 000962 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-HFES-RMWVCVTVDY-DLPRILKGMIEFHSKM 256 (1208)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~ 256 (1208)
..++++.+..-. +...+.|+|..|+|||||++.+++. +.. +-+. ++|+.+.+.. .+.++.+.+...+...
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 345777776532 3346799999999999999999873 332 2233 3677776554 5677777777766544
Q ss_pred CCCCCcH-----HHHHHHHHHHh--cCCceEEEEecC
Q 000962 257 EQSTSSI-----SLLETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 257 ~~~~~~~-----~~l~~~l~~~L--~~kr~LlVlDdv 286 (1208)
..+.... ......+.+++ ++++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 3221111 11111222222 589999999999
No 218
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.075 Score=59.31 Aligned_cols=178 Identities=14% Similarity=0.095 Sum_probs=102.8
Q ss_pred hhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccccc---ce-----eEEEEecCCCChHHHHHHH
Q 000962 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF---ES-----RMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~~~~~~~~~~~~~i 249 (1208)
..-+++...+..+. -..-+.+.|+.|+||+|+|..++...-=...- .| .-++.....+|+..+
T Consensus 9 ~~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 34456667666543 35688899999999999999887631100000 00 001111112221111
Q ss_pred HHHcccCCC-CCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhh
Q 000962 250 IEFHSKMEQ-STSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQI 322 (1208)
Q Consensus 250 ~~~~~~~~~-~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~ 322 (1208)
..... ..-.++++.+ +.+.+ .+++=++|+|+++..+......+...+.....++.+|.+|.+. .+...
T Consensus 80 ----~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred ----ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 00000 1122333332 22222 3566799999997777677788888887766777777777654 34432
Q ss_pred -hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 323 -MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 323 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
..-...+.+.+++++++.+.+..... . . .+.+..++..++|.|....
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~~---~-----~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREVT---M-----S----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHccC---C-----C----HHHHHHHHHHcCCCHHHHH
Confidence 22345789999999998887765321 1 0 2336788999999996443
No 219
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.63 E-value=0.02 Score=60.75 Aligned_cols=172 Identities=23% Similarity=0.304 Sum_probs=98.0
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc-cccccccceeEEEEecCCCChHH-HHHHH
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE-ERVREHFESRMWVCVTVDYDLPR-ILKGM 249 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~~~~~~~~-~~~~i 249 (1208)
.++|-.++..++-.++..... -+...-+.|+|+.|.|||+|...+..+ .++.++| .-|........++ .+++|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 478888888888877765321 123456889999999999998777765 2233443 3344444433322 35556
Q ss_pred HHHcccC----CCCCCcHHHHHHHHHHHhc------CCceEEEEecCCCCCc-cChHHHHHhhh----CCCCCcEEEEec
Q 000962 250 IEFHSKM----EQSTSSISLLETRLLEFLT------GQRFLLVLDDVWNEDY-RKWEPLQQLLK----QGHKGSRVLVTS 314 (1208)
Q Consensus 250 ~~~~~~~----~~~~~~~~~l~~~l~~~L~------~kr~LlVlDdvw~~~~-~~~~~l~~~l~----~~~~gs~iivTt 314 (1208)
.+++... .....+..+...++...|+ +-++..|+|.++-.-. ..-.-+...|. ...+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5555432 2222233333444545553 2357888888743211 11122333332 234556677899
Q ss_pred CCh-------hHHhhhCCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 315 RTA-------RVSQIMGIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 315 R~~-------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
|-. .|-..+.-..++-++.++-++...+++....
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 952 3433343334566777888888888887663
No 220
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.0016 Score=63.54 Aligned_cols=83 Identities=24% Similarity=0.336 Sum_probs=44.2
Q ss_pred hccCCcccEEecCCCCCccccccccc-CCcccEEeecCCCccccch--hhccCCcccEEecCCCccccccch----hccc
Q 000962 587 FHQLKYLRLLDLSSSTLTVLPDSVEE-LKLLRYLDLSRTEIKVLPN--SICNLYNLQTLKLIGCIWIMELPK----DLAN 659 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~lp~~i~~-l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~----~i~~ 659 (1208)
|..++.|..|.|.+|.|+.+.+.+.. +++|..|.|.+|+|..+-+ .+..|+.|++|.+-+|. ...-+. .+..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEe
Confidence 45556666666666666655444433 3346666666666554422 34555666666665554 221111 2456
Q ss_pred ccccceeeccc
Q 000962 660 LVKLRNLELEE 670 (1208)
Q Consensus 660 L~~L~~L~l~~ 670 (1208)
+++|+.||...
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 66666666553
No 221
>PRK07261 topology modulation protein; Provisional
Probab=96.60 E-value=0.0047 Score=61.92 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=39.2
Q ss_pred EEEEEecCCchHHHHHHHHhcccccc-cccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVR-EHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
.|.|+|++|+||||||+++.....+. -+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 48999999999999999998632221 234444442111 11223345555566666655
Q ss_pred eEEEEecCC
Q 000962 279 FLLVLDDVW 287 (1208)
Q Consensus 279 ~LlVlDdvw 287 (1208)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6778873
No 222
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.60 E-value=0.011 Score=74.20 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=93.3
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
+.+.|.+..++++.+++...-. -+-...+-|.++|.+|+|||+||+.+++. ....| +.+..+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 4578999999988877642210 01123456889999999999999999983 33222 222221
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-----------cChHHHHHhhhCC-CCCcEEE
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQG-HKGSRVL 311 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~~-~~gs~ii 311 (1208)
++.. .. .......+...+.........+|++|++..... .....+...+... ..+..++
T Consensus 247 ~i~~----~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIMS----KY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHhc----cc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1110 00 011122233333333345678999999843110 0122333333322 2233344
Q ss_pred E-ecCChh-HHhhh----CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH
Q 000962 312 V-TSRTAR-VSQIM----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL 378 (1208)
Q Consensus 312 v-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL 378 (1208)
| ||.... +-..+ .....+.+...+.++-.+++..+.-..... . ......+++.+.|.--
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~----~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA----E----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc----c----ccCHHHHHHhCCCCCH
Confidence 4 444332 21111 123467788888888888887554221110 0 1124567777777653
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.57 E-value=0.0024 Score=70.21 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=42.3
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.++|.++.++++++++.....+.....+++.++|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999997654322345689999999999999999999984
No 224
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.023 Score=63.03 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=54.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L 274 (1208)
+.++|+++|.+|+||||++.+++.. ...+=..+..++.. .+.. .+-++..++..+.......+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 4579999999999999999999873 22221234455543 3332 22233333333333222345555665554432
Q ss_pred cC-CceEEEEecCCCCC--ccChHHHHHhhh
Q 000962 275 TG-QRFLLVLDDVWNED--YRKWEPLQQLLK 302 (1208)
Q Consensus 275 ~~-kr~LlVlDdvw~~~--~~~~~~l~~~l~ 302 (1208)
.. +.=+|++|-.-... ......+...+.
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 21 23477888774322 122444555443
No 225
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.55 E-value=0.021 Score=55.40 Aligned_cols=116 Identities=22% Similarity=0.075 Sum_probs=63.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC---CChHHHHHHHHHHccc---CCC---CCCcH------
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD---YDLPRILKGMIEFHSK---MEQ---STSSI------ 263 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~~~~---~~~---~~~~~------ 263 (1208)
..|-|++-.|.||||+|...+- +...+=..+.+|-+-+. ......++.+ ..+.. ... ...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4677888889999999988776 33333223445444333 2223333322 00000 000 00111
Q ss_pred -HHHHHHHHHHhcCCc-eEEEEecCCC---CCccChHHHHHhhhCCCCCcEEEEecCCh
Q 000962 264 -SLLETRLLEFLTGQR-FLLVLDDVWN---EDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 264 -~~l~~~l~~~L~~kr-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1208)
....+..++.+.... =|+|||++-. ....+.+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 112223344444444 4999999832 12245677888887777777899999985
No 226
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.55 E-value=0.01 Score=62.87 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=35.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRI 245 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 245 (1208)
....++.|+|.+|+|||++|.+++.. ....-..++||+.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 44679999999999999999999873 33334678999887 5554443
No 227
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.53 E-value=0.00086 Score=64.97 Aligned_cols=88 Identities=24% Similarity=0.227 Sum_probs=47.5
Q ss_pred EEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceE
Q 000962 201 IPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFL 280 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~L 280 (1208)
|.++|.+|+|||+||+.+++ .... ...-+.++...+..+++...--. . . ........+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~-~-~~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-N-G-QFEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--T-T-TTCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-c-c-ccccccccccccc-----cceeE
Confidence 57999999999999999997 3322 22345677777766654321111 0 0 0010111111111 17899
Q ss_pred EEEecCCCCCccChHHHHHhh
Q 000962 281 LVLDDVWNEDYRKWEPLQQLL 301 (1208)
Q Consensus 281 lVlDdvw~~~~~~~~~l~~~l 301 (1208)
+|||++...+...+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999755544445555544
No 228
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.48 E-value=0.01 Score=62.15 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=36.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1208)
..-.++.|+|.+|+|||++|.+++.. ....-..++||+... ++..++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH
Confidence 44679999999999999999998873 333456789999876 5555443
No 229
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.44 E-value=0.011 Score=63.29 Aligned_cols=131 Identities=22% Similarity=0.318 Sum_probs=72.6
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc-cccccccceeEE----EEecCCCC--------
Q 000962 175 GRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE-ERVREHFESRMW----VCVTVDYD-------- 241 (1208)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~w----v~~~~~~~-------- 241 (1208)
+|..+-.--+++|++++ +..|.+.|.+|.|||.||.+..=. ...++.|..++- |.+.++..
T Consensus 228 prn~eQ~~ALdlLld~d------I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLDDD------IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcCCC------CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 46666677778888776 899999999999999998655431 123344544321 22322211
Q ss_pred -hHHHHHHHHHH---cccCCCCCCcHHHHHHHH---------HHHhcCC---ceEEEEecCCCCCccChHHHHHhhhCCC
Q 000962 242 -LPRILKGMIEF---HSKMEQSTSSISLLETRL---------LEFLTGQ---RFLLVLDDVWNEDYRKWEPLQQLLKQGH 305 (1208)
Q Consensus 242 -~~~~~~~i~~~---~~~~~~~~~~~~~l~~~l---------~~~L~~k---r~LlVlDdvw~~~~~~~~~l~~~l~~~~ 305 (1208)
+.--...|.+. +....... ...+...+ ..+.+++ +-+||+|...+-+ -.+++..+...+
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT---pheikTiltR~G 376 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPG--DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT---PHELKTILTRAG 376 (436)
T ss_pred hccchHHHHHhHHHHHhcccccc--hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---HHHHHHHHHhcc
Confidence 11111122211 11111101 11111111 1233444 4589999996543 466777777789
Q ss_pred CCcEEEEecCC
Q 000962 306 KGSRVLVTSRT 316 (1208)
Q Consensus 306 ~gs~iivTtR~ 316 (1208)
.||||+.|--.
T Consensus 377 ~GsKIVl~gd~ 387 (436)
T COG1875 377 EGSKIVLTGDP 387 (436)
T ss_pred CCCEEEEcCCH
Confidence 99999988654
No 230
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.017 Score=65.37 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=83.0
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc-------------------ccceeE
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-------------------HFESRM 232 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 232 (1208)
.++|-+....++..+..... .....+-++|+.|+||||+|..+++...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677888888888887543 1233599999999999999999987421110 112334
Q ss_pred EEEecCCCC---hHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcE
Q 000962 233 WVCVTVDYD---LPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSR 309 (1208)
Q Consensus 233 wv~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 309 (1208)
.+..+.... ..+..+++.+....... .++.-++++|++...+.+.-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444443333 12222333322221110 25678999999976655555566666666667788
Q ss_pred EEEecCCh-hHHhhh-CCCCcEeCCCC
Q 000962 310 VLVTSRTA-RVSQIM-GIRSPYLLEYL 334 (1208)
Q Consensus 310 iivTtR~~-~v~~~~-~~~~~~~l~~L 334 (1208)
+|++|... .+.... .....+++.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCc
Confidence 88888743 332221 12245666663
No 231
>PRK04296 thymidine kinase; Provisional
Probab=96.40 E-value=0.0091 Score=61.02 Aligned_cols=114 Identities=14% Similarity=-0.045 Sum_probs=61.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC--CCcHHHHHHHHHHHhcC
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS--TSSISLLETRLLEFLTG 276 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~l~~~L~~ 276 (1208)
.++.|+|..|.||||+|...+. +...+-..++.+. ..++.+.....++.+++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999999887 3333333334342 1112122223344444322111 2233445555544 233
Q ss_pred CceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhH
Q 000962 277 QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV 319 (1208)
Q Consensus 277 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 319 (1208)
+.-+||+|.+.--+.++...+...+ ...|..||+|.++.+.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 4459999999432212122333332 3467789999997543
No 232
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.39 E-value=0.01 Score=73.17 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=70.1
Q ss_pred CccccchhhHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
..++|-++.++.+...+..... ........+.++|+.|+|||++|+.++.. ... ..+.++++.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----
Confidence 3578999988888887763210 11234568899999999999999999873 322 23344444322111
Q ss_pred HHHHHcccCCCC-CC-cHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhC
Q 000962 248 GMIEFHSKMEQS-TS-SISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ 303 (1208)
Q Consensus 248 ~i~~~~~~~~~~-~~-~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 303 (1208)
.+.+-++..... .. ....+.+.+++ ...-+|+||++...+.+.+..+...+..
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~L~~~v~~---~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred cHHHHcCCCCCcccccccchHHHHHHh---CCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 111122221110 11 11223333322 3346999999988777777778777754
No 233
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.38 E-value=0.015 Score=59.43 Aligned_cols=87 Identities=21% Similarity=0.149 Sum_probs=49.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC--hHHHHHHHHHHcccCCCC---CCcHHH-HHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD--LPRILKGMIEFHSKMEQS---TSSISL-LETRLL 271 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~---~~~~~~-l~~~l~ 271 (1208)
++||.++|+.|+||||.+.+++.. .+.+-..+..|+. +.+. ..+-++..++.++..... ..+... +.+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~-D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISA-DTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-STSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecC-CCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 369999999999999999999874 3333344566665 3343 344566677777654221 222333 333343
Q ss_pred HHhcCCceEEEEecCC
Q 000962 272 EFLTGQRFLLVLDDVW 287 (1208)
Q Consensus 272 ~~L~~kr~LlVlDdvw 287 (1208)
+.-.++.=+|++|=.-
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 3322333477788663
No 234
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.38 E-value=0.013 Score=62.81 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=36.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccc----cceeEEEEecCCCChHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREH----FESRMWVCVTVDYDLPRI 245 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~ 245 (1208)
....++.|+|.+|+|||++|.+++........ -..++|++....++..++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 44679999999999999999999753222221 357899998887765544
No 235
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.37 E-value=0.019 Score=59.05 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=106.0
Q ss_pred cccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc----cccccceeEEEEecCCC-ChHHHHH
Q 000962 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER----VREHFESRMWVCVTVDY-DLPRILK 247 (1208)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~~~~~~-~~~~~~~ 247 (1208)
+.++++....+....... +..-..++|+.|.||-|.+..+.+.-. .+-.-+.+.|.+-+... .+..+-.
T Consensus 15 l~~~~e~~~~Lksl~~~~------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcccC------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 566777777777666533 377889999999999998877766311 12233445565543330 0000000
Q ss_pred HHHHHcccCCCCCCcHHHHHHHHHHHh-------c-CCce-EEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-
Q 000962 248 GMIEFHSKMEQSTSSISLLETRLLEFL-------T-GQRF-LLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA- 317 (1208)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~L-------~-~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~- 317 (1208)
.---++...+.+..|.-.+++.+++.- + .+.| ++|+-.++.-..+.-..+..-...-...+|+|+..-+-
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTS 168 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcc
Confidence 000001111111122222222222221 1 2344 66676665444445555665555555677887743321
Q ss_pred hHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh-HHHHH
Q 000962 318 RVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP-LAVKA 382 (1208)
Q Consensus 318 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lai~~ 382 (1208)
.+-... ...-.+++...+++|....+++.+-..+-. - -++++.+|+++++|.- -|+-+
T Consensus 169 riIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~-----l--p~~~l~rIa~kS~~nLRrAllm 228 (351)
T KOG2035|consen 169 RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ-----L--PKELLKRIAEKSNRNLRRALLM 228 (351)
T ss_pred cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc-----C--cHHHHHHHHHHhcccHHHHHHH
Confidence 111111 112467899999999999999888655431 1 2688999999998765 34433
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.35 E-value=0.059 Score=54.90 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=88.8
Q ss_pred CccccchhhHHH---HHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000962 171 ANVFGRDDDKER---ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 171 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
+++||.++.+.+ |.+.|.+++.=.....+-|..+|++|.|||-+|+++++. .+-.| +-|. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~---l~vk------at~l-- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL---LLVK------ATEL-- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce---EEec------hHHH--
Confidence 468898877654 556676654223445778999999999999999999994 33322 1121 1111
Q ss_pred HHHHHcccCCCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCc--------cChHHHHHhh----h--CCCCCcEEEE
Q 000962 248 GMIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDY--------RKWEPLQQLL----K--QGHKGSRVLV 312 (1208)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~--------~~~~~l~~~l----~--~~~~gs~iiv 312 (1208)
|-+..+ +... ..+.+.+. -+.-.+.+++|.++--.. .+...+..++ . ..+.|-..|.
T Consensus 188 -iGehVG------dgar-~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 -IGEHVG------DGAR-RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHhh------hHHH-HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 111111 1111 12222222 235689999998732100 1222222222 1 1245666666
Q ss_pred ecCChhHHhhh---CCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 313 TSRTARVSQIM---GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 313 TtR~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
.|...++.... .....++...-+++|-.+++...+-.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 66665543321 22356777778899999999988854
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.34 E-value=0.0069 Score=67.10 Aligned_cols=102 Identities=17% Similarity=0.287 Sum_probs=55.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
.-+.++|..|+|||.||.++++. ....-..++++++. +++..+....... ..+.... + +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFNN---DKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHHH---H-HHhc-cC
Confidence 56899999999999999999984 32222345666543 3333332211100 1111111 1 2222 22
Q ss_pred eEEEEecCCCCCccCh--HHHHHhhhCC-CCCcEEEEecCC
Q 000962 279 FLLVLDDVWNEDYRKW--EPLQQLLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~~~--~~l~~~l~~~-~~gs~iivTtR~ 316 (1208)
=||||||+-.+....| ..+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4899999965544444 3444444322 234458888874
No 238
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.34 E-value=0.031 Score=65.44 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=83.0
Q ss_pred CccccchhhHHHHHHHHc---CC-CCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000962 171 ANVFGRDDDKERILHMLL---SD-EFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1208)
.++.|.+..++.+..... .. ..-+-...+-|.++|++|+|||.+|+.+++. ....| +-++++ .+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVG------KLF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhH------Hhc
Confidence 356677666655543211 10 0001123567889999999999999999983 33222 112211 111
Q ss_pred HHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-------c-C----hHHHHHhhhCCCCCcEEEEec
Q 000962 247 KGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-------R-K----WEPLQQLLKQGHKGSRVLVTS 314 (1208)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-------~-~----~~~l~~~l~~~~~gs~iivTt 314 (1208)
. .. ...+...+.+.+...-...+++|++|+++..-. . . ...+...+.....+--||.||
T Consensus 297 ~----~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 297 G----GI-----VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred c----cc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 0 00 011122233333322235789999999952100 0 0 112222333333344466677
Q ss_pred CChhH-----HhhhCCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 315 RTARV-----SQIMGIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 315 R~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
...+- ...-..+..+.++..+.++-.++|..+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 65432 111134567889999999999999887754
No 239
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.32 E-value=0.008 Score=54.80 Aligned_cols=21 Identities=52% Similarity=0.755 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 000962 201 IPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~ 221 (1208)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998873
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.31 E-value=0.022 Score=60.47 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=53.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhccccccccc------ceeEEEEecCCCChHHHHHHHHHHcccCC---------CCC
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF------ESRMWVCVTVDYDLPRILKGMIEFHSKME---------QST 260 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~~~~~~---------~~~ 260 (1208)
....++.|+|.+|+|||++|.+++.. ....- ..++|++....++...+. ++.+...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 34679999999999999999999763 22223 567899988777665543 3333322110 002
Q ss_pred CcHHHHHHHHHHHhc----CCceEEEEecC
Q 000962 261 SSISLLETRLLEFLT----GQRFLLVLDDV 286 (1208)
Q Consensus 261 ~~~~~l~~~l~~~L~----~kr~LlVlDdv 286 (1208)
.+.+++...+.+..+ .+--|+|+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 344444444444432 24458889987
No 241
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.29 E-value=0.013 Score=62.23 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccc-eeEEEEecCCCC-hHHHHHHHHHHcccC-------CCCCCcHH---
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYD-LPRILKGMIEFHSKM-------EQSTSSIS--- 264 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~~-------~~~~~~~~--- 264 (1208)
+-.-++|.|..|+||||||+.+++ .++.+|+ .++++-+.+... +.++.+++.+.-... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 345789999999999999999998 5555553 445566655543 444555544321110 00011111
Q ss_pred --HHHHHHHHHh--c-CCceEEEEecC
Q 000962 265 --LLETRLLEFL--T-GQRFLLVLDDV 286 (1208)
Q Consensus 265 --~l~~~l~~~L--~-~kr~LlVlDdv 286 (1208)
...-.+.+++ + ++.+|+|+||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122234444 3 89999999999
No 242
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.29 E-value=0.0045 Score=59.71 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=61.6
Q ss_pred ccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc-ccccceeEEEEecCCCChHHHHHHHHHH
Q 000962 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV-REHFESRMWVCVTVDYDLPRILKGMIEF 252 (1208)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1208)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|.. +.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~------------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL------------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-------------
Confidence 466666666665554322 11345789999999999999999874221 112211 011110
Q ss_pred cccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCC-CCCcEEEEecCC
Q 000962 253 HSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 316 (1208)
. .+.+.+ -+.--|+++|+..-+......+...+... ....|+|.||+.
T Consensus 61 ---------~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 61 ---------P----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---------C----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---------c----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0 111111 25566889999766656667777777643 567899999985
No 243
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.28 E-value=0.2 Score=56.60 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 177 DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+.-.+.+.+.+.... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344566667776543 246789999999999999999999873
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.0071 Score=64.61 Aligned_cols=80 Identities=29% Similarity=0.376 Sum_probs=48.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
..-+.++|.+|+|||.||.++.+.. ...=-.+.++++ .+++.++...... .. ...+|.+.++ +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g~sv~f~~~------~el~~~Lk~~~~~----~~----~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNEL--LKAGISVLFITA------PDLLSKLKAAFDE----GR----LEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEEH------HHHHHHHHHHHhc----Cc----hHHHHHHHhh-c
Confidence 4568999999999999999999953 332234566654 4555555544432 11 1222222221 2
Q ss_pred ceEEEEecCCCCCccCh
Q 000962 278 RFLLVLDDVWNEDYRKW 294 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~ 294 (1208)
-=||||||+-.+....|
T Consensus 168 ~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 168 VDLLIIDDIGYEPFSQE 184 (254)
T ss_pred CCEEEEecccCccCCHH
Confidence 34999999965544444
No 245
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.25 E-value=0.018 Score=57.28 Aligned_cols=130 Identities=17% Similarity=0.190 Sum_probs=65.4
Q ss_pred cccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHHHHH
Q 000962 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKGMIE 251 (1208)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1208)
+||....+.++.+.+..-. ..+. -|.|+|..|+||+.+|+.+++... -.+.| +-|+++. .+.+.+-.++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a---~~~~-pVlI~GE~GtGK~~lA~~IH~~s~r~~~pf---i~vnc~~-~~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---SSDL-PVLITGETGTGKELLARAIHNNSPRKNGPF---ISVNCAA-LPEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---TSTS--EEEECSTTSSHHHHHHHHHHCSTTTTS-E---EEEETTT-S-HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHh---CCCC-CEEEEcCCCCcHHHHHHHHHHhhhcccCCe---EEEehhh-hhcchhhhhhhc
Confidence 4677778888777665433 1223 456999999999999999998321 11222 3334432 222222222222
Q ss_pred HcccCCCC-CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCC------C-----CCcEEEEecCC
Q 000962 252 FHSKMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG------H-----KGSRVLVTSRT 316 (1208)
Q Consensus 252 ~~~~~~~~-~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~iivTtR~ 316 (1208)
........ ..... -.+.+ -..=-|+||+|.......-..+...+..+ . ...|||.||..
T Consensus 73 ~~~~~~~~~~~~~~---G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 73 HEKGAFTGARSDKK---GLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp BCSSSSTTTSSEBE---HHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccccC---Cceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 11111001 11111 11211 23456889999766555556666666422 1 24689988884
No 246
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.087 Score=58.62 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=64.9
Q ss_pred CCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCC-hhHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCC
Q 000962 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNF 353 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 353 (1208)
+++=++|+|+++..+...+..+...+.....++.+|++|.+ ..+... ..-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45568899999888778888898888777777776666655 444322 2234688999999999998887641 1
Q ss_pred CccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 354 SSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 354 ~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
. + ...++..++|.|..+..+.
T Consensus 206 ----~-~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 ----A-D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ----C-h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1235778899997555443
No 247
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.016 Score=67.07 Aligned_cols=190 Identities=16% Similarity=0.167 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc--ccceeEEEEecCCCChHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE--HFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
+++||-+.-...+...+.... -..-....|+-|+||||+|+-++....-.. ..+ .+.+...-..+-..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e-----PC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE-----PCGKCISCKEINEG 85 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC-----cchhhhhhHhhhcC
Confidence 357999999999998887654 245567899999999999998886321111 111 11111111111110
Q ss_pred -HHHHccc---CCCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEE-ecCChhHHh-
Q 000962 249 -MIEFHSK---MEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLV-TSRTARVSQ- 321 (1208)
Q Consensus 249 -i~~~~~~---~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~v~~- 321 (1208)
.++-+.. .....+++.++.+.+.-. .++|-=..|+|.|.-.+...|..+..-+......-+.|. ||-.+.+..
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 0000000 001122233333322211 134445899999987777778888777755555555444 555444432
Q ss_pred hhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 322 IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 322 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
.....+.|.++.++.++-...+...+...+.. -..+....|++..+|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~-------~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN-------IEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCc-------cCHHHHHHHHHHcCCCh
Confidence 23445789999999999888888877554432 22445556666666643
No 248
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.23 E-value=0.027 Score=67.43 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=35.2
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++|.+..++.+...+.... ..-+.|+|..|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999887765432 34567999999999999999986
No 249
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.23 E-value=0.051 Score=68.42 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=85.4
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..+.|.+..++++.+.+.-+-. .+....+-|.++|++|+|||++|+++++. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 4577888887777665532110 01123445789999999999999999983 33333 22221 1
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC------c-c-----ChHHHHHhhhC--CCCCcE
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED------Y-R-----KWEPLQQLLKQ--GHKGSR 309 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~------~-~-----~~~~l~~~l~~--~~~gs~ 309 (1208)
++ .... .......+...+...-+..+.+|++|++..-. . . ...++...+.. ...+--
T Consensus 522 ~l----~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 EI----LSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred HH----hhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 11 1111 11122223333333334667999999984210 0 0 11223333332 223445
Q ss_pred EEEecCChhHHhh-h----CCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 310 VLVTSRTARVSQI-M----GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 310 iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
||.||...+.... + ..+..+.+...+.++-.++|+.+..
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~ 636 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR 636 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc
Confidence 6667765543221 1 2346788988999999999976653
No 250
>PRK04132 replication factor C small subunit; Provisional
Probab=96.21 E-value=0.096 Score=64.95 Aligned_cols=153 Identities=12% Similarity=0.068 Sum_probs=95.1
Q ss_pred cCCchHHHHHHHHhccccccccc-ceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEe
Q 000962 206 MPGLGKTTLAQLLFNEERVREHF-ESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLD 284 (1208)
Q Consensus 206 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlD 284 (1208)
+.++||||+|..++++. ..+.+ ..++-+++++..... .+++++..+...... -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 67899999999999842 11222 124556666544443 333333332211100 01245799999
Q ss_pred cCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhhh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhh
Q 000962 285 DVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNL 362 (1208)
Q Consensus 285 dvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~ 362 (1208)
+++..+......+...+......+++|.+|.+. .+.... .....+++.+++.++-.+.+.+.+...+.. -.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-------i~ 710 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-------LT 710 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-------CC
Confidence 998877677788888877655566776665543 333222 234689999999999888887766433211 11
Q ss_pred HHHHHHHHHhcCCChHHHH
Q 000962 363 EAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 363 ~~~~~~i~~~c~g~PLai~ 381 (1208)
.+....|++.++|-+-.+.
T Consensus 711 ~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 4577899999999884443
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.15 E-value=0.024 Score=56.62 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=29.7
Q ss_pred EEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD 241 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 241 (1208)
++.|+|.+|+||||+|..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999873 333345677887765543
No 252
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.15 E-value=0.025 Score=59.63 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=32.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD 241 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 241 (1208)
....++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 44679999999999999999999873 323334577887655543
No 253
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.13 E-value=0.004 Score=58.55 Aligned_cols=21 Identities=57% Similarity=0.711 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
||.|+|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 254
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.033 Score=67.38 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=86.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc-cc-----ceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-HF-----ESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-----~~~~wv~~~~~~~~~~ 244 (1208)
+.++||+++++++++.|.... .+-+ .++|.+|||||++|.-++. ++.. .- +..++ +. +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~----KNNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~-sL----D--- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT----KNNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIY-SL----D--- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC----CCCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEE-Ee----c---
Confidence 568999999999999998765 1112 3679999999999877776 3221 11 11111 00 1
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCC---------CccChHHHHHhhhCCCCCcEEEEec
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNE---------DYRKWEPLQQLLKQGHKGSRVLVTS 314 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivTt 314 (1208)
+..-+.+... ..+.++....+.+.+ +.++..|++|.+..- ..+.-.-++.++. .+.--.|=.||
T Consensus 234 ----~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT 307 (786)
T COG0542 234 ----LGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATT 307 (786)
T ss_pred ----HHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEecc
Confidence 1111111111 223333333333333 345899999998431 1122233344443 33334466677
Q ss_pred CChhH------HhhhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 315 RTARV------SQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 315 R~~~v------~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
-++.- +......+.+.+...+.+++..+++...
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 65321 1111334688899999999999987654
No 255
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.10 E-value=0.015 Score=60.03 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=59.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
.+|.|+|+.|.||||++..+.. .........+++- .+.. +.........+... ....+.....+.++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~-~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPI--EFVHESKRSLINQR-EVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCc--cccccCccceeeec-ccCCCccCHHHHHHHHhcCCc
Confidence 4789999999999999998776 3333333344432 2211 11000000000000 011122334556677776667
Q ss_pred eEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHh
Q 000962 279 FLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1208)
=.|++|++-+. +.+..+... ...|..|+.|+-...+..
T Consensus 76 d~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 79999999432 233333332 335666888887665543
No 256
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.09 E-value=0.0099 Score=59.18 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=77.3
Q ss_pred EEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC---CCcHHHHHHHHHHHhcC
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS---TSSISLLETRLLEFLTG 276 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~l~~~l~~~L~~ 276 (1208)
++.|.|.+|+||||+|..+.... .. .++++.-...+ ..+..+.|.......... ......+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68999999999999999998631 11 23344333322 334445554433322111 11122344444443332
Q ss_pred CceEEEEecC--CCC-----Cc-cCh----HHHHHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeCCCCChhHHHHHHH
Q 000962 277 QRFLLVLDDV--WNE-----DY-RKW----EPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPEDQCWSIFK 344 (1208)
Q Consensus 277 kr~LlVlDdv--w~~-----~~-~~~----~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 344 (1208)
.-++|+|.+ |-. +. ..| ..+...+. ..+..+|+|+... -.+..+.++.-..|.
T Consensus 77 -~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~Ev------------g~g~vp~~~~~r~~~ 141 (170)
T PRK05800 77 -GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNEV------------GMGIVPEYRLGRHFR 141 (170)
T ss_pred -CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcCC------------cccccCCCHHHHHHH
Confidence 337889987 210 10 112 22333333 2444566666521 122344556666777
Q ss_pred HHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
...+. .++.+...|.++..-..|+|+-+
T Consensus 142 d~lG~--------lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 142 DIAGR--------LNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHHH--------HHHHHHHHCCEEEEEeCCCcEec
Confidence 66643 34445555555556667777654
No 257
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.028 Score=63.27 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...++.++|++|+||||+|.+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 258
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.03 E-value=0.011 Score=58.60 Aligned_cols=147 Identities=20% Similarity=0.277 Sum_probs=78.6
Q ss_pred EEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCc----HHHHHHHHHHHhcC
Q 000962 201 IPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSS----ISLLETRLLEFLTG 276 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~l~~~l~~~L~~ 276 (1208)
+.|.|..|+|||++|.++... ....++++.-.+.++. +..+.|.+..... +.... ...+.+.+.+. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~-~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKEL-D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhc-C-
Confidence 679999999999999999763 2235667766666654 3344433322222 22222 23344434221 2
Q ss_pred CceEEEEecC--CC-----CCc--------cChHHHHHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeCCCCChhHHHH
Q 000962 277 QRFLLVLDDV--WN-----EDY--------RKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPEDQCWS 341 (1208)
Q Consensus 277 kr~LlVlDdv--w~-----~~~--------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~ 341 (1208)
+.-.+++|.+ |- .+. ..+..+...+. ..+..+|+||. +|. ....+.++.-.
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsn--EvG----------~g~vp~~~~~r 138 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSN--EVG----------LGVVPENALGR 138 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEEC--CcC----------CCCCCCCHHHH
Confidence 3347999987 21 000 11122333333 24455666664 221 23445667777
Q ss_pred HHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH
Q 000962 342 IFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL 378 (1208)
Q Consensus 342 lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL 378 (1208)
.|....+. .++.+...|.++..-..|+|+
T Consensus 139 ~f~d~lG~--------lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 139 RFRDELGR--------LNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHHH--------HHHHHHHHCCEEEEEECCcce
Confidence 77777653 344555556666666677775
No 259
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.01 E-value=0.17 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.....++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999983
No 260
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.036 Score=68.02 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=75.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCC--CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEE--DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
..++|-++.+..|-+.+.....+-. .+...+.+.|+.|+|||-||++++. .+-+..+..+-|+.+. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 4577888888888777765542222 2567888999999999999999987 4444444444444432 111
Q ss_pred HHHHcccCCCCCCcHHHHHHHHHHHhcCCce-EEEEecCCCCCccChHHHHHhhhCC
Q 000962 249 MIEFHSKMEQSTSSISLLETRLLEFLTGQRF-LLVLDDVWNEDYRKWEPLQQLLKQG 304 (1208)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (1208)
+.+.++.... .--.+....|.+.++.++| +|+||||...+.+....+...+..+
T Consensus 633 vskligsp~g--yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPG--YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCcc--cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2222232211 1111222345556666766 7779999887776677677777543
No 261
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.93 E-value=0.0091 Score=61.35 Aligned_cols=107 Identities=20% Similarity=0.204 Sum_probs=51.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHH-h--
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEF-L-- 274 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-L-- 274 (1208)
-+++.|.|.+|.||||+++.+... .... ...+.+......-... +.+..+.. ...+.......... .
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHHHHhcCCcccccc
Confidence 357889999999999999998763 2222 1233333322222222 22222111 01111100000000 0
Q ss_pred ---cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCC
Q 000962 275 ---TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT 316 (1208)
Q Consensus 275 ---~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1208)
..++-+||+|++...+...+..+....+. .|.|+|+.=-.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 13446999999977665566666665543 57888865443
No 262
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.93 E-value=0.015 Score=63.69 Aligned_cols=84 Identities=18% Similarity=0.081 Sum_probs=53.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRL 270 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l 270 (1208)
..-+++-|+|++|+||||||.+++. .....-..++||+....++.. .++.++.... ...+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 4567999999999999999999876 333344567899987776643 2333332111 123344555555
Q ss_pred HHHhc-CCceEEEEecC
Q 000962 271 LEFLT-GQRFLLVLDDV 286 (1208)
Q Consensus 271 ~~~L~-~kr~LlVlDdv 286 (1208)
...++ +.--+||+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 44443 45669999997
No 263
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.92 E-value=0.039 Score=55.79 Aligned_cols=118 Identities=21% Similarity=0.290 Sum_probs=71.5
Q ss_pred CCccccchhhHHHHHHH---HcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHH
Q 000962 170 TANVFGRDDDKERILHM---LLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~---L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 246 (1208)
-..++|.|..++.+++- +..+ ....-|.+||.-|+||+.|++++.+ .+....-. -|.|.+.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G-----~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~------- 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEG-----LPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE------- 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcC-----CcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH-------
Confidence 35688999888888753 3322 2345678999999999999999998 44443332 2222211
Q ss_pred HHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC-CccChHHHHHhhhCC---CCCcEEEEecCCh
Q 000962 247 KGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQG---HKGSRVLVTSRTA 317 (1208)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~---~~gs~iivTtR~~ 317 (1208)
+-.+...+.+.|+. ..+||.|+.||.--+ +.+....++.++..+ .+...++..|.++
T Consensus 123 ------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 01122223333333 478999999999432 225577788777543 2444455555543
No 264
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.91 E-value=0.016 Score=63.42 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=53.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRL 270 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l 270 (1208)
..-+++-|+|.+|+||||||.+++.. ....-..++||+....++.. .++.++.... .....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999988763 33334567899887766543 2333332111 123344444555
Q ss_pred HHHhc-CCceEEEEecC
Q 000962 271 LEFLT-GQRFLLVLDDV 286 (1208)
Q Consensus 271 ~~~L~-~kr~LlVlDdv 286 (1208)
....+ +.--+||+|-|
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 44443 45669999998
No 265
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.90 E-value=0.24 Score=55.54 Aligned_cols=215 Identities=13% Similarity=0.128 Sum_probs=122.7
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHH-HHHhcccccccccceeEEEEecCCC---ChHHHHHHHHH
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLA-QLLFNEERVREHFESRMWVCVTVDY---DLPRILKGMIE 251 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~~---~~~~~~~~i~~ 251 (1208)
|.+..++|..||.+.. -..|.|.|+-|.||+.|+ .++..+.+ .+..++|.+-. +-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 5678899999998765 458999999999999999 77776422 24555544321 22333444443
Q ss_pred Hcc-----------------------cCCCC-CCcH-HHHHHH-------HHH-------------------Hhc---CC
Q 000962 252 FHS-----------------------KMEQS-TSSI-SLLETR-------LLE-------------------FLT---GQ 277 (1208)
Q Consensus 252 ~~~-----------------------~~~~~-~~~~-~~l~~~-------l~~-------------------~L~---~k 277 (1208)
+++ +.... ..+. .++... |++ +|. .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 332 11111 1111 112111 111 111 23
Q ss_pred ceEEEEecCCCCCc---cChHHHHHhhh--CCCCCcEEEEecCChhHHh----hhC--CCCcEeCCCCChhHHHHHHHHH
Q 000962 278 RFLLVLDDVWNEDY---RKWEPLQQLLK--QGHKGSRVLVTSRTARVSQ----IMG--IRSPYLLEYLPEDQCWSIFKKI 346 (1208)
Q Consensus 278 r~LlVlDdvw~~~~---~~~~~l~~~l~--~~~~gs~iivTtR~~~v~~----~~~--~~~~~~l~~L~~~~~~~lf~~~ 346 (1208)
|=+||+|+.-.... .-|+.+..+-. ...+-..||++|-+..... .+. ....+.|.-.+.+.|.++...+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 56899999843221 12333333211 1234456888887754433 332 2356788999999999999888
Q ss_pred hccCCCCC---------cccc----chhhHHHHHHHHHhcCCChHHHHHHHhhhccCCChh-HHHHHHhh
Q 000962 347 AFNQGNFS---------SRMQ----QQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVN-KWRKILSS 402 (1208)
Q Consensus 347 a~~~~~~~---------~~~~----~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~-~w~~~l~~ 402 (1208)
........ .... .....+-....++.+||--.=+..+++.++...+++ ...++.++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 75532110 0000 012334456788899999999999999998876553 44555443
No 266
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.90 E-value=0.00053 Score=82.90 Aligned_cols=202 Identities=26% Similarity=0.411 Sum_probs=111.7
Q ss_pred cccccEEEecCCCCCCCC------CCCCCCCeEEEecc-CCCCCCC-----CCccccccceeeecCCC--CCccccCCC-
Q 000962 926 FQTLLEMKAINCPKLRGL------PQIFAPQKLEISGC-DLLSTLP-----NSEFSQRLQLLALEGCP--DGTLVRAIP- 990 (1208)
Q Consensus 926 ~~~L~~L~l~~c~~L~~l------~~~~~l~~L~l~~~-~~l~~lp-----~~~~~~~L~~L~L~~~~--~~~~~~~l~- 990 (1208)
++.|+.+.+..|..+... ..++.++.|++++| ......+ ....+++|+.|+++++. .......+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 577788888888777642 24567788888873 3222222 11335788888888887 222222222
Q ss_pred CCCCCCEEeecCCCCCCcCC--C-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCC---CCCccCCCCCCc
Q 000962 991 ETSSLNFLILSKISNLDSFP--R-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGC---PKLETLPDEGLP 1064 (1208)
Q Consensus 991 ~l~~L~~L~ls~n~~~~~~~--~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~---~~l~~lp~~~~~ 1064 (1208)
.|++|+.|.+.+|..++... . ...+++|+.|+|++|..++.........++++|+.|.+..+ +.++.+......
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 37888888888887533211 1 25677889999998887644322223444565555544433 334433221111
Q ss_pred ---C-CCCEEEEecCCCCcccCCcCCCCCCCCCC-ceeecCCCCCC-CCCCC-CCCCccceEeccCChhhHH
Q 000962 1065 ---T-SLKCLIIASCSGLKSLGPRGTLKSLNSLK-DFYIEDCPLLQ-SFPED-GLPENLQHLVIQNCPLLTQ 1129 (1208)
Q Consensus 1065 ---~-~L~~L~l~~c~~l~~lp~~~~l~~l~~L~-~L~l~~c~~l~-~lp~~-~~~~sL~~L~l~~c~~L~~ 1129 (1208)
. .+..+.+.+|+.++.+.. ......... .+.+.+|+.++ .+... ....+++.|+++.|..++.
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSL--SYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhh--hhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 1 566666666666666533 111123333 46677777662 22221 1112377888888766554
No 267
>PRK08233 hypothetical protein; Provisional
Probab=95.88 E-value=0.023 Score=58.01 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|.+|+||||+|+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999987
No 268
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.00075 Score=68.81 Aligned_cols=84 Identities=29% Similarity=0.278 Sum_probs=59.7
Q ss_pred ccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccc--hhcccccccce
Q 000962 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELP--KDLANLVKLRN 665 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~ 665 (1208)
..+.+.+.|++.||.+..+. .+.+|+.|++|.||-|+|+.+ ..+..|++|+.|.|+.|. +..+- ..+.+|++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhh
Confidence 34566777888888877653 256778888888888888877 447788888888888776 33332 24567888888
Q ss_pred eeccccccc
Q 000962 666 LELEEMFWF 674 (1208)
Q Consensus 666 L~l~~n~~~ 674 (1208)
|.|..|.+.
T Consensus 93 LWL~ENPCc 101 (388)
T KOG2123|consen 93 LWLDENPCC 101 (388)
T ss_pred HhhccCCcc
Confidence 888887553
No 269
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.84 E-value=0.031 Score=61.10 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=47.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC--hHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD--LPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L 274 (1208)
..++++|+|++|+||||++.+++.....+..-..+..|+... +. ....+....+.++.......+...+...+.. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~-~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT-YRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-L 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc-cchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-c
Confidence 357999999999999999999987332221112455565432 22 1222233333333332223344455555543 3
Q ss_pred cCCceEEEEecC
Q 000962 275 TGQRFLLVLDDV 286 (1208)
Q Consensus 275 ~~kr~LlVlDdv 286 (1208)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777753
No 270
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.83 E-value=0.09 Score=50.97 Aligned_cols=106 Identities=28% Similarity=0.235 Sum_probs=58.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
-.+++|+|..|.|||||++.+.... ......+|+.-.. .+.-... -..-+...-.+...+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHhcC
Confidence 4589999999999999999998632 2223334432100 0000000 011111122344555667
Q ss_pred ceEEEEecCCC-CCccChHHHHHhhhCCCCCcEEEEecCChhHHhh
Q 000962 278 RFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQI 322 (1208)
Q Consensus 278 r~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 322 (1208)
.-++++|+--. -|....+.+...+... +..||++|.+.+....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 78999998732 2223345555555443 2468888887665543
No 271
>PRK13695 putative NTPase; Provisional
Probab=95.82 E-value=0.011 Score=59.63 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 272
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.15 Score=58.60 Aligned_cols=194 Identities=16% Similarity=0.176 Sum_probs=101.1
Q ss_pred CccccchhhHHHHHHHHcCCCC------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
.++=|.+..+.++..++..-.. -+-...+-|.++|++|.|||.||++++. ...-.| +.++. .+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isA----pe 258 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISA----PE 258 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecc----hh
Confidence 4566888888777766543211 1123456788999999999999999998 333333 23322 11
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-cC----------hHHHHHhhhC---C-CCCcE
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-RK----------WEPLQQLLKQ---G-HKGSR 309 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-~~----------~~~l~~~l~~---~-~~gs~ 309 (1208)
|+..+. ..+.+.+.+.+.+.-..-.+++++|+++--.+ .+ ..++...+.. . ..|-.
T Consensus 259 ----ivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 259 ----IVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ----hhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 222221 23334444445555567899999999942111 11 1223333221 1 11333
Q ss_pred EEE---ecCChhHHh---hh-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHH
Q 000962 310 VLV---TSRTARVSQ---IM-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKA 382 (1208)
Q Consensus 310 iiv---TtR~~~v~~---~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~ 382 (1208)
||| |+|-..+-. .. ..+..+.+..-++..-.++++..+-+-... ..-+++.+|+.---..|---.|+..
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~----g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS----GDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC----CCcCHHHHHhcCCCccchhHHHHHH
Confidence 443 555433211 12 234577787777777777777666543321 1123333333322223333455555
Q ss_pred HHhhhc
Q 000962 383 IAGFLR 388 (1208)
Q Consensus 383 ~~~~l~ 388 (1208)
.|+..+
T Consensus 406 ~Aa~vA 411 (802)
T KOG0733|consen 406 EAAFVA 411 (802)
T ss_pred HHHHHH
Confidence 555443
No 273
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0044 Score=37.62 Aligned_cols=19 Identities=42% Similarity=0.772 Sum_probs=9.3
Q ss_pred ccEEeecCCCccccchhhc
Q 000962 616 LRYLDLSRTEIKVLPNSIC 634 (1208)
Q Consensus 616 Lr~L~L~~~~i~~lp~~i~ 634 (1208)
|++|+|++|+++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555555544443
No 274
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.76 E-value=0.1 Score=53.00 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=63.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC--CCChHHHHH------HHHHHcccCCC-----CCCcH-
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV--DYDLPRILK------GMIEFHSKMEQ-----STSSI- 263 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~------~i~~~~~~~~~-----~~~~~- 263 (1208)
-.+++|+|..|.|||||++.++-. .......+++.-.. ..+...... ++++.++.... ..-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 458999999999999999999863 22233444432111 112212111 13333332211 11111
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCC-CCccChHHHHHhhhCC-CC-CcEEEEecCChhHHh
Q 000962 264 SLLETRLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQG-HK-GSRVLVTSRTARVSQ 321 (1208)
Q Consensus 264 ~~l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~ 321 (1208)
....-.+.+.+...+-++++|+--. -+....+.+...+... .. |..||++|.+.+...
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1222235556667888999998732 1222334444444322 22 567888888766543
No 275
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.13 Score=54.33 Aligned_cols=78 Identities=18% Similarity=0.353 Sum_probs=45.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccc--cccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcC
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVR--EHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~ 276 (1208)
++|.++|++|.|||+|++++++...++ ..|....-+.+... .++..=..+ .+.-+..+.++|.+.+++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHhC
Confidence 689999999999999999999965544 33433344433211 111111100 122344455566666666
Q ss_pred Cc--eEEEEecC
Q 000962 277 QR--FLLVLDDV 286 (1208)
Q Consensus 277 kr--~LlVlDdv 286 (1208)
+. +.+.+|.|
T Consensus 248 ~~~lVfvLIDEV 259 (423)
T KOG0744|consen 248 RGNLVFVLIDEV 259 (423)
T ss_pred CCcEEEEEeHHH
Confidence 55 45567888
No 276
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.74 E-value=0.044 Score=60.47 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccc----cccceeEEEEecCCCChHHHHHHHHHHcc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVR----EHFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1208)
....++-|+|.+|+|||++|.+++-..... ..=..++||+....++.+++. ++++.++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 446799999999999999998876432221 112468999999888887764 4555554
No 277
>PRK09354 recA recombinase A; Provisional
Probab=95.74 E-value=0.023 Score=62.79 Aligned_cols=84 Identities=18% Similarity=0.096 Sum_probs=54.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRL 270 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l 270 (1208)
..-+++-|+|++|+||||||.+++.. ....-..++||+....++.. .++.++.... .....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999998763 33334667899988877653 2333332211 123344444555
Q ss_pred HHHhc-CCceEEEEecC
Q 000962 271 LEFLT-GQRFLLVLDDV 286 (1208)
Q Consensus 271 ~~~L~-~kr~LlVlDdv 286 (1208)
...++ ++--+||+|-|
T Consensus 131 ~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHHhhcCCCCEEEEeCh
Confidence 44443 45669999998
No 278
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.06 Score=62.60 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=83.9
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
.++=|.++-+.++.+...-+-. -+-...+-|..+|++|.|||++|+++++ .-...|= ++.. .
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nFl-----svkg----p 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNFL-----SVKG----P 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCee-----eccC----H
Confidence 3444566666666544432210 0124467789999999999999999998 4455552 2211 1
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-----------cChHHHHHhhhCCCCCcEEEE
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQGHKGSRVLV 312 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~~~~gs~iiv 312 (1208)
+++... ...+...+.+.+.+.=+--..+|+||.++.-.. ....++..-+........|+|
T Consensus 503 EL~sk~---------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ELFSKY---------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred HHHHHh---------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 111110 012222333333333334568888888742111 112233333332222223333
Q ss_pred ---ecCChhHHhh-hC---CCCcEeCCCCChhHHHHHHHHHhccCC
Q 000962 313 ---TSRTARVSQI-MG---IRSPYLLEYLPEDQCWSIFKKIAFNQG 351 (1208)
Q Consensus 313 ---TtR~~~v~~~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~ 351 (1208)
|-|...+-.. +. .+..+.++.-+.+.-.++|+.++-...
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 4444333222 22 456777888888888899998885543
No 279
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.73 E-value=0.082 Score=61.13 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=48.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
.+++.++|++|+||||++.+++........-..+..|+... +.. .+-++...+.++.......+..++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 46999999999999999988876322112224556666533 221 122233333333332223344555555544 23
Q ss_pred CCceEEEEecCC
Q 000962 276 GQRFLLVLDDVW 287 (1208)
Q Consensus 276 ~kr~LlVlDdvw 287 (1208)
..=+||+|..-
T Consensus 299 -~~DlVlIDt~G 309 (424)
T PRK05703 299 -DCDVILIDTAG 309 (424)
T ss_pred -CCCEEEEeCCC
Confidence 34688899663
No 280
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.11 Score=57.93 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=46.3
Q ss_pred CCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh-HHhhh-CCCCcEeCCCCChhHHHHHHHHH
Q 000962 276 GQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQIM-GIRSPYLLEYLPEDQCWSIFKKI 346 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 346 (1208)
+++=++|+|++...+......+...+.....+..+|++|.+.. +.... .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556788876666666667777765445566777777643 33222 22367889999999988887653
No 281
>PRK06696 uridine kinase; Validated
Probab=95.68 E-value=0.012 Score=61.98 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=33.7
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+++..
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5666777777776432 24578999999999999999999997
No 282
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.034 Score=62.30 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=50.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC--ChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY--DLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..++.++|+.|+||||++.+++.....+.....+..|+. +.+ ...+-++...+.++.......+..++...+.+ +.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT-DSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-ccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 468999999999999999999873221211234555553 333 23344455555555443333333334444433 34
Q ss_pred CCceEEEEecCCC
Q 000962 276 GQRFLLVLDDVWN 288 (1208)
Q Consensus 276 ~kr~LlVlDdvw~ 288 (1208)
++ =+|++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 5566998843
No 283
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.68 E-value=0.029 Score=54.56 Aligned_cols=21 Identities=48% Similarity=0.686 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 284
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.089 Score=52.89 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=64.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC--CChHHHHHHHHHHccc--CCCC--C-------CcHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD--YDLPRILKGMIEFHSK--MEQS--T-------SSIS 264 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~--~~~~--~-------~~~~ 264 (1208)
-.+++|+|..|.|||||.+.++.-. ......+++.-... ...... + ..+.. .... . -+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~-~---~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL-R---KNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH-H---hhEEEEcCCchhccchHHHHhhCHH
Confidence 4589999999999999999998732 22233333321110 011111 1 11110 0000 0 0111
Q ss_pred H-HHHHHHHHhcCCceEEEEecCCC-CCccChHHHHHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeC
Q 000962 265 L-LETRLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1208)
Q Consensus 265 ~-l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1208)
+ ..-.+...+..+.-+++||+--. -|....+.+...+.....+..||++|.+.+.... ++..+.+
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 11224555667788999998732 1222334455555433345678888888776643 4444443
No 285
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.049 Score=63.04 Aligned_cols=88 Identities=19% Similarity=0.106 Sum_probs=46.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L 274 (1208)
...+|+|+|.+|+||||++.+++.....+.....+..|+.. .+.. .+.++...+.++.......+...+...+.+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-L 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-h
Confidence 35799999999999999999888632122112344555442 2222 222222223333222222333445544443 3
Q ss_pred cCCceEEEEecCC
Q 000962 275 TGQRFLLVLDDVW 287 (1208)
Q Consensus 275 ~~kr~LlVlDdvw 287 (1208)
. +.=+||+|..-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 3 34588888874
No 286
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.66 E-value=0.0075 Score=69.68 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=39.9
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++|.++.+++|+..|......-..+.+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999998433211234567999999999999999999997
No 287
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.66 E-value=0.1 Score=52.35 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=63.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhccc---ccccc---cc--eeEEEEecCCCChHHHHHHHHHHcccCCC---C---CCcH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEE---RVREH---FE--SRMWVCVTVDYDLPRILKGMIEFHSKMEQ---S---TSSI 263 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---~---~~~~ 263 (1208)
-.+++|+|..|.|||||.+.+..+. ++... |. .+.|+ .+ .+.++.+..... . ..+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4589999999999999999886321 11111 11 12232 22 344555543211 1 1111
Q ss_pred H-HHHHHHHHHhcCC--ceEEEEecCCC-CCccChHHHHHhhhCC-CCCcEEEEecCChhHHhhhCCCCcEeC
Q 000962 264 S-LLETRLLEFLTGQ--RFLLVLDDVWN-EDYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1208)
Q Consensus 264 ~-~l~~~l~~~L~~k--r~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1208)
. ...-.+...+..+ .=++++|+--. -+....+.+...+... ..|..||++|.+.+.... ++..+.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 1222344455556 67888898722 1222334444444321 246678899998776542 4445544
No 288
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.65 E-value=0.031 Score=59.99 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=40.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHHc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFH 253 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1208)
...|.=|+|.+|+|||+||.+++-...+.. .=..++|++-...++..++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 356999999999999999988875333322 12458999999989887764 566554
No 289
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.011 Score=55.86 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.--|.|.||+|+||||+++++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999983
No 290
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.61 E-value=0.012 Score=58.76 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=51.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccc-cccceeEEEEecCCCCh---HHHHHHHHHHcccCCCCCCcHHHHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVR-EHFESRMWVCVTVDYDL---PRILKGMIEFHSKMEQSTSSISLLETRLLEF 273 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~ 273 (1208)
..++.+.|+.|+|||.||+.+++ .+. +.....+-++.+.-... ...+...... .. .. +.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~---~~---~~-------v~-- 65 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGS---PP---GY-------VG-- 65 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHH---TT---CH-------HH--
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhc---cc---ce-------ee--
Confidence 56889999999999999999997 333 34445555555443320 1111111100 00 00 00
Q ss_pred hcCCceEEEEecCCCCCc-----------cChHHHHHhhh
Q 000962 274 LTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLK 302 (1208)
Q Consensus 274 L~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~ 302 (1208)
....-+|+||++..... ..|..+...+.
T Consensus 66 -~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 66 -AEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp -HHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred -ccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 01112999999988776 66788888774
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.59 E-value=0.06 Score=54.57 Aligned_cols=126 Identities=17% Similarity=0.121 Sum_probs=63.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHccc--CC------------CCCCcH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK--ME------------QSTSSI 263 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~--~~------------~~~~~~ 263 (1208)
-.+++|+|..|.|||||++.++--.. .-...+++.-. +.........+.++- .. ...-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 35899999999999999999987321 11223333211 111110111111110 00 001111
Q ss_pred -HHHHHHHHHHhcCCceEEEEecCCCC-CccChHHHHHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeC
Q 000962 264 -SLLETRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1208)
Q Consensus 264 -~~l~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1208)
+...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.+.... ++..+.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11122345556677889999988431 222234444444332346778888888776542 3444443
No 292
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.58 E-value=0.0048 Score=63.31 Aligned_cols=38 Identities=21% Similarity=0.025 Sum_probs=16.2
Q ss_pred CCcccEEecCCC--ccccccchhcccccccceeecccccc
Q 000962 636 LYNLQTLKLIGC--IWIMELPKDLANLVKLRNLELEEMFW 673 (1208)
Q Consensus 636 L~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~n~~ 673 (1208)
|++|+.|+++.| ...+.++.-..++++|++|++++|++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 344444444444 22233333333344455555554443
No 293
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.56 E-value=0.0037 Score=64.08 Aligned_cols=106 Identities=25% Similarity=0.209 Sum_probs=55.6
Q ss_pred cCCcccEEecCCCCCcccccccccCCcccEEeecCC--Ccc-ccchhhccCCcccEEecCCCccccccch---hcccccc
Q 000962 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRT--EIK-VLPNSICNLYNLQTLKLIGCIWIMELPK---DLANLVK 662 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~---~i~~L~~ 662 (1208)
.+..|..|++.+..++.+- .+-.|++|++|.++.| ++. .++....++++|++|++++|++ .. ++ .+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KD-LSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-cc-ccccchhhhhcc
Confidence 3444555555555544331 2334667777777777 333 4555555567777777777663 21 22 2345566
Q ss_pred cceeecccccccccccCCc-cCCCCCcCcCCCceEe
Q 000962 663 LRNLELEEMFWFKCSTLPA-GIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 663 L~~L~l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~ 697 (1208)
|..|++.+|..+++..--. .+.-+++|.+|+...+
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 6677776664433221111 1233566666666554
No 294
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.56 E-value=0.06 Score=53.56 Aligned_cols=117 Identities=18% Similarity=0.078 Sum_probs=61.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC--CChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD--YDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
-.+++|+|..|.|||||.+.++-. .......+++.-..- .+..+..+ ..++.... -..-+...-.+.+.+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVYQ-LSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHHh
Confidence 358999999999999999999862 223344455432111 11111111 11111000 1111122223455566
Q ss_pred CCceEEEEecCCC-CCccChHHHHHhhhCC-CCCcEEEEecCChhHHh
Q 000962 276 GQRFLLVLDDVWN-EDYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQ 321 (1208)
Q Consensus 276 ~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 321 (1208)
.++-++++|+--. -|......+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7788999998732 2223334454544322 34667888888876443
No 295
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.11 Score=57.57 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=54.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L 274 (1208)
...+++.|+|+.|+||||++.+++.. ....-..+.+|++..... ..+-++..++.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 34689999999999999999999873 222223456666543221 233445555555433322345566655554332
Q ss_pred -cCCceEEEEecCCC
Q 000962 275 -TGQRFLLVLDDVWN 288 (1208)
Q Consensus 275 -~~kr~LlVlDdvw~ 288 (1208)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456888898744
No 296
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.54 E-value=0.21 Score=47.87 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHhcccC-ChHHHHHHHHHHHHHHhH
Q 000962 2 AELVVSLVVQPIVEKAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEERQLK-VPQLKDWLGKLRNAAYDA 80 (1208)
Q Consensus 2 ae~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~lr~~~~d~ 80 (1208)
||.++|++++++++.++..+. +........+.-+++|...++.|.-++.+.+..... +..-+.-++++.+...++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~----~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVI----DASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHH
Confidence 678888888887777766544 444455567888899999999999999998875332 222266789999999999
Q ss_pred HHHHHHHH
Q 000962 81 EDILETFA 88 (1208)
Q Consensus 81 ed~ld~~~ 88 (1208)
+++++.|.
T Consensus 79 ~~LV~k~s 86 (147)
T PF05659_consen 79 KELVEKCS 86 (147)
T ss_pred HHHHHHhc
Confidence 99999884
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=0.1 Score=59.06 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccc--cccceeEEEEecCCCChHH--HHHHHHHHcccCCCCCCcHHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVR--EHFESRMWVCVTVDYDLPR--ILKGMIEFHSKMEQSTSSISLLETRLLE 272 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~l~~ 272 (1208)
..++|.++|..|+||||.+.+++...... .+=..+..|++. .+.... -++..++.++...........+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35799999999999999999998732221 111234445443 444332 2444555555433334455556555554
Q ss_pred HhcCCceEEEEecCCCCCc--cChHHHHHhhhC
Q 000962 273 FLTGQRFLLVLDDVWNEDY--RKWEPLQQLLKQ 303 (1208)
Q Consensus 273 ~L~~kr~LlVlDdvw~~~~--~~~~~l~~~l~~ 303 (1208)
. .+.-+|++|-.-.... .....+...+..
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3 4456889998854321 123445555543
No 298
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.53 E-value=0.13 Score=59.26 Aligned_cols=57 Identities=25% Similarity=0.164 Sum_probs=35.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHHccc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSK 255 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~ 255 (1208)
....+|.++|.+|+||||.|.+++.. .+..-..++-|++. .+.. .+.++.+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D-~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAAD-TYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCC-CCCHHHHHHHHHHHHHcCC
Confidence 34789999999999999999999873 33221234444443 2222 3334455555443
No 299
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.51 E-value=0.05 Score=63.77 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=55.9
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh
Q 000962 195 EDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL 274 (1208)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L 274 (1208)
...-+|.-++|++|+||||||.-|++. ..| .++=|.+|+..+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 445689999999999999999999863 223 3566777777666655544443333211 12
Q ss_pred --cCCceEEEEecCCCCCccChHHHHHhh
Q 000962 275 --TGQRFLLVLDDVWNEDYRKWEPLQQLL 301 (1208)
Q Consensus 275 --~~kr~LlVlDdvw~~~~~~~~~l~~~l 301 (1208)
.+++..+|+|.++.......+.+...+
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHH
Confidence 267888999999654422234444443
No 300
>PHA02244 ATPase-like protein
Probab=95.51 E-value=0.081 Score=58.44 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=25.9
Q ss_pred hhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.....+..++.... -|.|+|..|+|||+||+++++
T Consensus 107 ~~~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 107 YETADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred HHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHH
Confidence 33445555654432 367899999999999999997
No 301
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.49 E-value=0.074 Score=61.09 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+..++.++|.+|+||||.|.+++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888873
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=95.48 E-value=0.1 Score=57.97 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=47.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHHcccCCCC---CCcHHH-HHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQS---TSSISL-LETRL 270 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~---~~~~~~-l~~~l 270 (1208)
+..+|.++|+.|+||||++.+++.... ...+ .++.+. .+.+.. .+-++..++.++..... ..+... +.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999998888886321 2223 333443 333332 22344455555432211 222222 22333
Q ss_pred HHHhcCCceEEEEecCCC
Q 000962 271 LEFLTGQRFLLVLDDVWN 288 (1208)
Q Consensus 271 ~~~L~~kr~LlVlDdvw~ 288 (1208)
...-....=+|++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 322222223899998854
No 303
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.47 E-value=0.081 Score=58.83 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=42.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccc----cccceeEEEEecCCCChHHHHHHHHHHcc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVR----EHFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1208)
....++-|+|.+|+|||+|+.+++-..... ..-..++||+....|+.+++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 446788999999999999999886432221 1124689999999998877654 555554
No 304
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.26 Score=59.45 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=100.1
Q ss_pred Cccccchhh---HHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDD---KERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~---~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
.++.|-++. ++++++.|..+.. -+..-++=+-++|++|.|||-||++++-...+ =|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 356677654 5556667766531 12334567889999999999999999973322 23444422
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC------------c---cChHHHHHhhhCCCCCc-
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED------------Y---RKWEPLQQLLKQGHKGS- 308 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~------------~---~~~~~l~~~l~~~~~gs- 308 (1208)
+..+.+.... . ..+.+.+...=...+..|.+|+++... . ..+.++..-+.....+.
T Consensus 379 ---EFvE~~~g~~--a---srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--A---SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcccc--h---HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 2222222111 1 111111212223567888888873210 0 11233333333222223
Q ss_pred -EEEEecCChhHHhhh-----CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 309 -RVLVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 309 -~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
-++-+|...++.... .-+..+.++.-+.....++|..++-.... ..+..++++ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~------~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL------DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC------CcchhhHHH-HHhcCCCCcHHH
Confidence 233366655554321 23567888888889999999998855432 123455666 888877777443
No 305
>PRK10867 signal recognition particle protein; Provisional
Probab=95.40 E-value=0.054 Score=62.20 Aligned_cols=24 Identities=42% Similarity=0.527 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+|.++|.+|+||||.|.+++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999998888876
No 306
>PRK06762 hypothetical protein; Provisional
Probab=95.38 E-value=0.41 Score=47.81 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|+|+.|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 307
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.37 E-value=0.19 Score=49.50 Aligned_cols=118 Identities=18% Similarity=0.085 Sum_probs=63.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC---CCChHHHHHHHHH---HcccC----CCC-C---CcH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV---DYDLPRILKGMIE---FHSKM----EQS-T---SSI 263 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~~---~~~~~----~~~-~---~~~ 263 (1208)
...|-|++-.|.||||.|..++- +...+=..+..|-+-+ .......+....- +.+.. ... . ...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35778888899999999988776 3222222233332222 2233333333200 00000 000 0 011
Q ss_pred HHHHHHHHHHhcCCce-EEEEecCC---CCCccChHHHHHhhhCCCCCcEEEEecCCh
Q 000962 264 SLLETRLLEFLTGQRF-LLVLDDVW---NEDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 264 ~~l~~~l~~~L~~kr~-LlVlDdvw---~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1208)
....+..++.+...+| |+|||.+- +...-+.+.+...+.....+.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2223334455555444 99999982 112245677888887777778899999975
No 308
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.33 E-value=0.084 Score=58.50 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=39.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHHc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFH 253 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1208)
....++.|+|.+|+||||||..++....... .-..++||+....++..++ .++++..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 4577999999999999999998875222211 1135799998888777764 3444444
No 309
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.33 E-value=0.062 Score=58.14 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH--HHHHHHHHHcccCCC---CCCcH-HHHHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP--RILKGMIEFHSKMEQ---STSSI-SLLETR 269 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~~~~~~~---~~~~~-~~l~~~ 269 (1208)
.+.++|.++|++|+||||++.+++.. ....-..+.+|++. .+... +-++..++..+.... ...+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 34689999999999999999999873 33332345566544 33332 222333344332211 11122 222344
Q ss_pred HHHHhcCCceEEEEecCC
Q 000962 270 LLEFLTGQRFLLVLDDVW 287 (1208)
Q Consensus 270 l~~~L~~kr~LlVlDdvw 287 (1208)
+........=++|+|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444334445578888774
No 310
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.32 E-value=0.048 Score=67.90 Aligned_cols=173 Identities=16% Similarity=0.098 Sum_probs=80.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC-------CCcHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-------TSSISLLETRL 270 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~l~~~l 270 (1208)
..++.|+|+.|.||||+.+.+.-.. + .....++|.+...... ..+.++...++..... ......+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~-l--~aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA-L--MFQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH-H--HHHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 4689999999999999999887521 0 0111122222221000 0111111111110000 11122222222
Q ss_pred HHHhcCCceEEEEecCCCC-CccChHHH----HHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeCCCCChh-HHHHHHH
Q 000962 271 LEFLTGQRFLLVLDDVWNE-DYRKWEPL----QQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPED-QCWSIFK 344 (1208)
Q Consensus 271 ~~~L~~kr~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~ 344 (1208)
. .+ .++-|+++|..-.. ++.+...+ ...+. ..|+.+|+||...++.........+....+..+ +... |.
T Consensus 398 ~-~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~ 472 (771)
T TIGR01069 398 S-KT-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PT 472 (771)
T ss_pred H-hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eE
Confidence 2 22 57899999998542 22222233 22232 357889999999887554322222211111111 1100 11
Q ss_pred HHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhcc
Q 000962 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRK 389 (1208)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~ 389 (1208)
.+. ..+.+ -..-|-+|++++ |+|-.|.--|..+..
T Consensus 473 Ykl-~~G~~--------g~S~a~~iA~~~-Glp~~ii~~A~~~~~ 507 (771)
T TIGR01069 473 YKL-LKGIP--------GESYAFEIAQRY-GIPHFIIEQAKTFYG 507 (771)
T ss_pred EEE-CCCCC--------CCcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 111 11111 023466777777 788888777776643
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.32 E-value=0.11 Score=52.36 Aligned_cols=21 Identities=48% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
++.++|++|+||||+++.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.31 E-value=0.2 Score=49.95 Aligned_cols=124 Identities=19% Similarity=0.086 Sum_probs=62.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEE-------EecCCCCh--HHHHHHHHHHcccCCCCCCcHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWV-------CVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLET 268 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~ 268 (1208)
-.+++|+|..|.|||||++.+.--... ....+++ .+.+.... ..+...+... ....-..-+...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 458999999999999999999873221 1111111 12232211 1222222110 1111111122223
Q ss_pred HHHHHhcCCceEEEEecCCC-CCccChHHHHHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeC
Q 000962 269 RLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1208)
Q Consensus 269 ~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1208)
.+.+.+..++=++++|+--. -|......+...+... +..||++|.+..... .+++.+.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 34555666778889997622 1222334444555433 356888888776553 23444443
No 313
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.0082 Score=36.44 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=18.9
Q ss_pred cccEEecCCCCCcccccccccC
Q 000962 592 YLRLLDLSSSTLTVLPDSVEEL 613 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~~i~~l 613 (1208)
+|++|||++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999987754
No 314
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.28 E-value=0.051 Score=61.27 Aligned_cols=114 Identities=23% Similarity=0.241 Sum_probs=68.4
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1208)
.++|+++.+..+...+.... -+-+.|.+|+|||+||+.++. ..... .++|.+.......+++-...-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhcCchhH
Confidence 47898888888887777654 578999999999999999997 33333 356777777666665433221
Q ss_pred HcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhC
Q 000962 252 FHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ 303 (1208)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 303 (1208)
.......... .-...-+. ..-+.++++|.++......-..+...+..
T Consensus 92 ~~~~~~~~~~--~~~~gpl~---~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 92 AALLLEPGEF--RFVPGPLF---AAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhhccCCeE--EEecCCcc---cccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 1110000000 00000000 01115999999988776555666666543
No 315
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.25 E-value=0.11 Score=55.49 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=53.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCC------------------
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME------------------ 257 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------------------ 257 (1208)
....++.|+|.+|+|||++|.++.... .+ +=..++|++..+. ..++.+++. +++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEEeccccc
Confidence 446799999999999999999986521 22 2346788888654 345555432 222100
Q ss_pred --CCCCcHHHHHHHHHHHhcC-CceEEEEecC
Q 000962 258 --QSTSSISLLETRLLEFLTG-QRFLLVLDDV 286 (1208)
Q Consensus 258 --~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv 286 (1208)
......+.+...+.+.++. +.-++|+|.+
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 0012335566666666653 5568999987
No 316
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.25 E-value=0.078 Score=59.33 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=40.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccc----cceeEEEEecCCCChHHHHHHHHHHc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREH----FESRMWVCVTVDYDLPRILKGMIEFH 253 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1208)
....++-|+|.+|+|||++|.+++........ =..++||+....++..++. ++++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHc
Confidence 34679999999999999999999864222111 1478999999888877664 344443
No 317
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.23 E-value=0.077 Score=56.79 Aligned_cols=89 Identities=19% Similarity=0.104 Sum_probs=58.0
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHH-cccC----CCCCCcHHHHHHH
Q 000962 195 EDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF-HSKM----EQSTSSISLLETR 269 (1208)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-~~~~----~~~~~~~~~l~~~ 269 (1208)
-...+++=|+|+.|.||||+|.+++- ..+..-..++|++....+++..+. ++... +..- ........++.+.
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEK 133 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHH
Confidence 34578999999999999999999886 344444588999999999887654 33333 2111 1112222333444
Q ss_pred HHHHhcCCceEEEEecC
Q 000962 270 LLEFLTGQRFLLVLDDV 286 (1208)
Q Consensus 270 l~~~L~~kr~LlVlDdv 286 (1208)
+......+--|+|+|.|
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44443444569999988
No 318
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.0024 Score=65.33 Aligned_cols=82 Identities=27% Similarity=0.301 Sum_probs=65.8
Q ss_pred HHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccch--hhccCCcccEEecCCCccccccchh-----c
Q 000962 585 KIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN--SICNLYNLQTLKLIGCIWIMELPKD-----L 657 (1208)
Q Consensus 585 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~-----i 657 (1208)
..+.+|+.|.||.||-|.|+.+.. +..|++|+.|.|+.|.|..+-+ -+.+|++|++|-|..|.--+.-+.. +
T Consensus 35 sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 457899999999999999998853 8899999999999999987754 5789999999999887655554432 3
Q ss_pred ccccccceee
Q 000962 658 ANLVKLRNLE 667 (1208)
Q Consensus 658 ~~L~~L~~L~ 667 (1208)
.-|++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 4566666665
No 319
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.18 E-value=0.17 Score=50.74 Aligned_cols=104 Identities=18% Similarity=0.095 Sum_probs=55.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEE------ecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC------VTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLL 271 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~ 271 (1208)
-.+++|+|..|.|||||++.+..-. ......+++. +.+... -..-....-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 4599999999999999999998622 1222233221 111111 011111222344
Q ss_pred HHhcCCceEEEEecCCCC-CccChHHHHHhhhCC-CC-CcEEEEecCChhHHhh
Q 000962 272 EFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQG-HK-GSRVLVTSRTARVSQI 322 (1208)
Q Consensus 272 ~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~~ 322 (1208)
..+..+.-++++|+--.. +......+...+... .. +..||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 556677889999987321 122233344444321 12 2568888887665543
No 320
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.046 Score=55.51 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=43.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcc--cCCCCCCcHHHHHHHHHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHS--KMEQSTSSISLLETRLLEF 273 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~~ 273 (1208)
.++.+|+|.|.+|.||||+|+.++. .++... ++-++- +.+-...-.....+... -......+.+.+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4578999999999999999999998 444331 111111 11111111111111111 1112255677777888887
Q ss_pred hcCCc
Q 000962 274 LTGQR 278 (1208)
Q Consensus 274 L~~kr 278 (1208)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77776
No 321
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.23 Score=59.74 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=78.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
...+.+-++|++|.|||.||+++++ ..+.+|-.+.+ . .++. .........+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~-----~----~l~s---------k~vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKG-----S----ELLS---------KWVGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeC-----H----HHhc---------cccchHHHHHHHHHHHHHc
Confidence 4456899999999999999999998 44444533211 1 1110 0112233334444455556
Q ss_pred CCceEEEEecCCCC-----Cc------cChHHHHHhhhCCC--CCcEEEEecCChhHHhhh-----CCCCcEeCCCCChh
Q 000962 276 GQRFLLVLDDVWNE-----DY------RKWEPLQQLLKQGH--KGSRVLVTSRTARVSQIM-----GIRSPYLLEYLPED 337 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~-----~~------~~~~~l~~~l~~~~--~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~ 337 (1208)
.....|++|.+..- .. ....++...+.... .+..||-||-.+...... .-+..+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999999321 10 12233344443222 333345555544332211 23457889999999
Q ss_pred HHHHHHHHHhcc
Q 000962 338 QCWSIFKKIAFN 349 (1208)
Q Consensus 338 ~~~~lf~~~a~~ 349 (1208)
+..+.|+.+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999998864
No 322
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.12 E-value=0.12 Score=52.00 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=62.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC--CCChHHHHHHHHHHcccCCCC-C-------CcH-HHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV--DYDLPRILKGMIEFHSKMEQS-T-------SSI-SLL 266 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~~~~~~~~-~-------~~~-~~l 266 (1208)
-.+++|+|..|.|||||.+.++--. ......+++.-.. ........+.+. .+...... . -+. +..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 3589999999999999999998631 2223333332111 011111111110 00000000 0 111 112
Q ss_pred HHHHHHHhcCCceEEEEecCCCC-CccChHHHHHhhhC-CCCCcEEEEecCChhHHhhhCCCCcEeC
Q 000962 267 ETRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQ-GHKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1208)
Q Consensus 267 ~~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1208)
.-.+...+..+.=++++|+--.. |......+...+.. ...|..||++|.+.+... . ++..+.+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 22344555667779999987321 22223344444432 124667888888876654 2 3444443
No 323
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.10 E-value=0.061 Score=60.26 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=70.5
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH-HH
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG-MI 250 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i~ 250 (1208)
.++|+...+.++.+.+..-. ....-|.|+|-.|+||+++|+.++..... .-..-+.|++.... ...+.. +.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~--~~~~~~~lf 78 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN--ENLLDSELF 78 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC--HHHHHHHHc
Confidence 57899888888877765443 11235789999999999999999862111 11122345554422 222222 21
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1208)
....... .... ......+. ....=.|+||||..........+...+..+. ...|||+||..
T Consensus 79 g~~~~~~-~g~~-~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 79 GHEAGAF-TGAQ-KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccc-CCcc-cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 1100000 0000 00001111 1223458899997665556677777665422 13588888764
No 324
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.10 E-value=0.078 Score=54.57 Aligned_cols=21 Identities=52% Similarity=0.646 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
||+|.|.+|+||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 325
>PRK07667 uridine kinase; Provisional
Probab=95.09 E-value=0.035 Score=56.94 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+.+.+.+.... ....+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 355666665443 4458999999999999999999987
No 326
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.12 Score=52.04 Aligned_cols=119 Identities=20% Similarity=0.171 Sum_probs=61.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHccc--CCCC---C--------CcHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK--MEQS---T--------SSIS 264 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~--~~~~---~--------~~~~ 264 (1208)
-.+++|+|..|.|||||++.++-.. ......+++.-....+.. ..+...+.- +... . -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4589999999999999999998632 122334443211100000 011111110 0000 0 1111
Q ss_pred H-HHHHHHHHhcCCceEEEEecCCC-CCccChHHHHHhhhCC-CCCcEEEEecCChhHHhh
Q 000962 265 L-LETRLLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQI 322 (1208)
Q Consensus 265 ~-l~~~l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 322 (1208)
+ ..-.+...+..++=++++|+--. -|....+.+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 1 12235566677888999998732 1222233444444321 236778999888766543
No 327
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.06 E-value=0.042 Score=57.20 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999999874
No 328
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.04 E-value=0.088 Score=65.85 Aligned_cols=133 Identities=16% Similarity=0.201 Sum_probs=73.2
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|+...+.++.+.+..-. ....-|.|+|..|+|||++|+.+++... +. -...+.+++..-. ...+...+
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~-~~~~v~i~c~~~~--~~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSG-RN-NRRMVKMNCAAMP--AGLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcC-CC-CCCeEEEecccCC--hhHhhhhh
Confidence 368999988888876665332 1233678999999999999999987321 11 1233445554332 12222211
Q ss_pred HHcccCCCC-CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000962 251 EFHSKMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1208)
Q Consensus 251 ~~~~~~~~~-~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1208)
++..... ..........+. ....=.|+||||..........+...+.... .+.|||.||..
T Consensus 448 --fg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 448 --FGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred --cCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 1111100 000001111121 1234579999997666566667777764321 34589988864
No 329
>PRK05439 pantothenate kinase; Provisional
Probab=95.03 E-value=0.12 Score=56.40 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.2
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 195 EDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.....+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999876
No 330
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.02 E-value=0.13 Score=57.26 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=41.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHHcc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1208)
....++-|+|.+|+|||++|..++-...... .-..++||+....++.+++ .++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 3467899999999999999988875322211 1136899999999988776 45565554
No 331
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.01 E-value=0.16 Score=51.29 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..+|.|+|++|+||||+|+.++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999973
No 332
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.21 Score=57.51 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=87.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
..-|.+||++|.|||-||++|+| +.+.+| ++|-. .+++..-. ..+...+...+.+.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKG----PELlNkYV---------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKG----PELLNKYV---------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecC----HHHHHHHh---------hhHHHHHHHHHHHhhcCC
Confidence 44578999999999999999999 555555 33321 22222111 122233333344444577
Q ss_pred ceEEEEecCCCCCc-----cC------hHHHHHhhhC--CCCCcEEEEecCChhHHhhh-----CCCCcEeCCCCChhHH
Q 000962 278 RFLLVLDDVWNEDY-----RK------WEPLQQLLKQ--GHKGSRVLVTSRTARVSQIM-----GIRSPYLLEYLPEDQC 339 (1208)
Q Consensus 278 r~LlVlDdvw~~~~-----~~------~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~ 339 (1208)
.+.|+||.++..-+ .. ..++..-+.. ...|--||-.|-.+++-... .-+...-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 99999999943111 11 2333333332 23455566666655543221 2345677888888999
Q ss_pred HHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 340 WSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 340 ~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
.++++...-....+. ...-+++++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl--~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPL--SSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCC--CcccCHHHHhhc--ccccCCc
Confidence 999998876422211 122345555543 3455544
No 333
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.12 Score=58.18 Aligned_cols=50 Identities=30% Similarity=0.365 Sum_probs=36.3
Q ss_pred ccccchh---hHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 172 NVFGRDD---DKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 172 ~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
++-|-|+ |+++|+++|.++.. -+..-.+-|.++|++|.|||-||++|+-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 4556664 56778888877641 11223567889999999999999999974
No 334
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.98 E-value=0.3 Score=53.44 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHH
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRI 245 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 245 (1208)
..+....++.++... +.|.|.|.+|+||||+|+.++. +....| +.|.++...+..++
T Consensus 50 ~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 50 DKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSRIDL 106 (327)
T ss_pred CHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCChhhc
Confidence 334455677777543 3589999999999999999997 444333 34555555444433
No 335
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.96 E-value=0.26 Score=48.27 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=36.0
Q ss_pred HHHHHHhcCCceEEEEecCC-CCCc-cChHHHHHhhh-CCCCCcEEEEecCChhHHhhh
Q 000962 268 TRLLEFLTGQRFLLVLDDVW-NEDY-RKWEPLQQLLK-QGHKGSRVLVTSRTARVSQIM 323 (1208)
Q Consensus 268 ~~l~~~L~~kr~LlVlDdvw-~~~~-~~~~~l~~~l~-~~~~gs~iivTtR~~~v~~~~ 323 (1208)
-.|.+.+-+++-+++-|.=- +-|+ ..|+ +...|. -+..|..||++|-+.++...+
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 34566667889999999531 1122 3344 444443 356799999999999887765
No 336
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.95 E-value=0.0015 Score=64.82 Aligned_cols=85 Identities=25% Similarity=0.205 Sum_probs=56.4
Q ss_pred hccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhccccccccee
Q 000962 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 666 (1208)
+..++..++||++.|.+..+-..|..+..|..|+++.|.+..+|..++.+..+..+++..|. ....|.+++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence 34456666777777666666666666666677777777777777777766666666666554 55666667777777777
Q ss_pred eccccc
Q 000962 667 ELEEMF 672 (1208)
Q Consensus 667 ~l~~n~ 672 (1208)
++..|.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 666654
No 337
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.93 E-value=0.14 Score=62.04 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=72.8
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
...++|....+.++.+.+..-. ....-|.|+|..|+|||++|+.+++... .... .+.|++..-. ...+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~p---fv~i~c~~~~--~~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRP---FVKVNCAALS--ETLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCC---eEEeecCCCC--HHHHHH
Confidence 3578999999988888775433 1233567999999999999999997321 1122 2444554332 122222
Q ss_pred HHHHcccCCCC-CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000962 249 MIEFHSKMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1208)
Q Consensus 249 i~~~~~~~~~~-~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1208)
.+ ++..... ..........+. ....-.|+||+|..........+...+..+. ...|||.||..
T Consensus 266 ~l--fg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 EL--FGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred HH--cCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 11 1111100 000000000010 1234568899997666566677777765422 12588887754
No 338
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.92 E-value=0.14 Score=53.61 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=73.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC-----CCChHHHHHHHHHHcccCCCC------CCcHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV-----DYDLPRILKGMIEFHSKMEQS------TSSISLL 266 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~~~~~~~~------~~~~~~l 266 (1208)
..+++|||..|.||||+|+.+.. ....-...+++...+ .....+...++++.++..... .-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45899999999999999999986 333333444443221 112233455566665533211 1122223
Q ss_pred HH-HHHHHhcCCceEEEEecCCCC-CccChHHHHHhhhC--CCCCcEEEEecCChhHHhhhCC
Q 000962 267 ET-RLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQ--GHKGSRVLVTSRTARVSQIMGI 325 (1208)
Q Consensus 267 ~~-~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~~ 325 (1208)
++ .+.+.|.-+.-++|.|.--+. +...-.++...+.+ ...|-..+..|-+-.|+..+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 22 356677889999999987332 11222445444432 2456678888888888776543
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.89 E-value=0.15 Score=57.67 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=48.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC-----CCcHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLLETRLL 271 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~l~ 271 (1208)
.-.++.|.|.+|+|||||+.+++.. ....-..++||+..+. ..++. .-++.++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4569999999999999999999873 3333346778876543 33332 223334322111 233444444442
Q ss_pred HHhcCCceEEEEecC
Q 000962 272 EFLTGQRFLLVLDDV 286 (1208)
Q Consensus 272 ~~L~~kr~LlVlDdv 286 (1208)
+.+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888887
No 340
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.80 E-value=1.6 Score=47.89 Aligned_cols=153 Identities=10% Similarity=0.052 Sum_probs=89.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhccc---c---cc--cccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEE---R---VR--EHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETR 269 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~---~---~~--~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~ 269 (1208)
.++.-++|..|.||+++|..+.+.. . +. .+-+...++..... ....+++.+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~--------------------~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDK--------------------DLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCC--------------------cCCHHHHHHH
Confidence 5677899999999999999988732 0 01 11112223321111 1112222222
Q ss_pred HHHH----h-cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCC-hhHHhh-hCCCCcEeCCCCChhHHHHH
Q 000962 270 LLEF----L-TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-ARVSQI-MGIRSPYLLEYLPEDQCWSI 342 (1208)
Q Consensus 270 l~~~----L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~l 342 (1208)
+.+. . .+++=++|+||+...+......+...+......+.+|++|.+ ..+... ......+++.++++++..+.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 1111 0 147778999999666555667788888776777777765543 444432 23356899999999998877
Q ss_pred HHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 343 FKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 343 f~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
+... + . . ++.++.++...+|.=-|+..+
T Consensus 158 l~~~--~--~-~--------~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 158 LLSK--N--K-E--------KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHc--C--C-C--------hhHHHHHHHHcCCHHHHHHHH
Confidence 7653 1 1 1 244566666667633455543
No 341
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.80 E-value=0.16 Score=62.55 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=81.8
Q ss_pred ccccchhhHHHHHHHHc---CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHH
Q 000962 172 NVFGRDDDKERILHMLL---SDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRI 245 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 245 (1208)
.+.|.+...+++.+.+. .... ....-.+-|.++|++|.|||++|+.++. +....| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH------h
Confidence 46677766665554432 2110 0011123489999999999999999987 333333 2222221 1
Q ss_pred HHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC----------ccChHHH-HHhh---hC--CCCCcE
Q 000962 246 LKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKWEPL-QQLL---KQ--GHKGSR 309 (1208)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~----------~~~~~~l-~~~l---~~--~~~gs~ 309 (1208)
. ++ .. ......+...+...-...+.+|++|+++.-. ...+... ...+ .. ...+.-
T Consensus 222 ~-~~---~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 V-EM---FV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred H-Hh---hh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 1 00 00 1112223333333334567899999994421 0112222 2222 11 123444
Q ss_pred EEEecCChhHHhhh-----CCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 310 VLVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 310 iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
||.||...+..... ..+..+.+...+.++-.+++..+...
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 55577765532211 23457788888888888888877644
No 342
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.78 E-value=0.42 Score=50.62 Aligned_cols=134 Identities=19% Similarity=0.239 Sum_probs=85.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
.+.+.|+|+.|+|||+-++.+++. .+....+..+..++...++..+........ ..........+...+.+.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccC
Confidence 448899999999999999999872 223344556666776666666655544332 334455566666777899
Q ss_pred ceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeCCCCChhHHHHHHHHHhccCC
Q 000962 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQG 351 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~ 351 (1208)
.-+|+.|+...-....++.+.......+-|- +++-+ ......-.=++++...+|.+..++..
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~-vLvG~-----------prL~~~l~~~~~~~~rl~srv~v~~~ 227 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDKTGIGV-VLVGM-----------PRLFKVLRRPEDELSRLYSRVRVGKL 227 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHhhCceE-EEecC-----------hHHHhccccchHHHHHHHHHhhhHhh
Confidence 9999999997766677777777665433332 22211 11111222345677778887776643
No 343
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.77 E-value=0.24 Score=54.28 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=35.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF 252 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1208)
..++.|.|.+|+||||+|.+++.... ..+=..++|++... ...++.+.+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 45888999999999999999877321 22124578888765 345555555444
No 344
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.75 E-value=0.073 Score=59.54 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=66.8
Q ss_pred cccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHHHHH
Q 000962 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKGMIE 251 (1208)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1208)
+||....+.++.+.+..-. ..-.-|.|+|..|+||+++|+.+++... ....| +-|++..-. ...+...+
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~~--~~~l~~~l- 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAALS--ENLLDSEL- 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCCC--hHHHHHHH-
Confidence 3677777777666655433 1123478999999999999999986321 11222 334444322 22222211
Q ss_pred HcccCCCC-CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000962 252 FHSKMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1208)
Q Consensus 252 ~~~~~~~~-~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1208)
++..... ..........+. ....-.|+||+|..........+...+.... ...|||.||..
T Consensus 71 -fG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 71 -FGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred -hccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 1111000 000000000011 1234568999996655555566666664322 23488888753
No 345
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.75 E-value=0.11 Score=53.52 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=38.4
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcccccccccceeE-------EEEecCCCChHHH--HHHHHHHcccCCC
Q 000962 195 EDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRM-------WVCVTVDYDLPRI--LKGMIEFHSKMEQ 258 (1208)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-------wv~~~~~~~~~~~--~~~i~~~~~~~~~ 258 (1208)
.....+|.++||+|.||||..+.++.+...++.-..++ =|...-+.++++. .++..++.+....
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 34567889999999999999999987433222211111 1222333455554 4666776655443
No 346
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.15 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999985
No 347
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.72 E-value=0.084 Score=54.45 Aligned_cols=118 Identities=16% Similarity=0.134 Sum_probs=60.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCC-------CcHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQST-------SSISLLETRL 270 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~l~~~l 270 (1208)
.+++.|.|..|.||||+.+.++-.. +..+ ...+|.+.. .. -.+...+...+...+... .+..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999999887521 1111 112222211 11 122223333332221111 1112222111
Q ss_pred HHHhcCCceEEEEecCCCCC-ccC----hHHHHHhhhCCCCCcEEEEecCChhHHhhhC
Q 000962 271 LEFLTGQRFLLVLDDVWNED-YRK----WEPLQQLLKQGHKGSRVLVTSRTARVSQIMG 324 (1208)
Q Consensus 271 ~~~L~~kr~LlVlDdvw~~~-~~~----~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 324 (1208)
. +..++-|+++|..-... ..+ ...+...+.. .|..+|+||-+.+++..+.
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 1 23568899999984321 111 1122333332 3788999999998887654
No 348
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.70 E-value=0.0023 Score=77.28 Aligned_cols=181 Identities=24% Similarity=0.341 Sum_probs=105.0
Q ss_pred CCCCCeEEEeccCCCCCC---CCCccccccceeeecCC-CC-Cc----cccCCCCCCCCCEEeecCCCCCCcCC--CC-C
Q 000962 946 IFAPQKLEISGCDLLSTL---PNSEFSQRLQLLALEGC-PD-GT----LVRAIPETSSLNFLILSKISNLDSFP--RW-P 1013 (1208)
Q Consensus 946 ~~~l~~L~l~~~~~l~~l---p~~~~~~~L~~L~L~~~-~~-~~----~~~~l~~l~~L~~L~ls~n~~~~~~~--~~-~ 1013 (1208)
++.++.|.+.+|...... +.....+.|+.|++++| .. .. .......|.+|+.|+++++..++..- .+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455577888887655542 33345688999999873 21 11 12234567888999999887533221 11 3
Q ss_pred CCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCC---CCcCCCCEEEEec---CCCCcccCCcCCC
Q 000962 1014 NLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDE---GLPTSLKCLIIAS---CSGLKSLGPRGTL 1087 (1208)
Q Consensus 1014 ~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~~~L~~L~l~~---c~~l~~lp~~~~l 1087 (1208)
.+++|+.|.+.+|..++..........+++|++|+|++|..++.-... ...++|+.|.+.. |+.++.+... .+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~-~~ 345 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLS-GL 345 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHH-Hh
Confidence 478899999888886555544455677888999999988765221100 0013444443333 3334443221 11
Q ss_pred CCC--CCCCceeecCCCCCCCCCCCCC-CCccc-eEeccCChhh
Q 000962 1088 KSL--NSLKDFYIEDCPLLQSFPEDGL-PENLQ-HLVIQNCPLL 1127 (1208)
Q Consensus 1088 ~~l--~~L~~L~l~~c~~l~~lp~~~~-~~sL~-~L~l~~c~~L 1127 (1208)
... ..+..+.+.+|+.++.+--... ..... .+.+.+||.|
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 122 2577777778877776543311 12222 4677788877
No 349
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.70 E-value=0.096 Score=54.84 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 350
>PTZ00301 uridine kinase; Provisional
Probab=94.67 E-value=0.034 Score=57.40 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999999876
No 351
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.65 E-value=0.14 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987754
No 352
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.60 E-value=0.16 Score=56.75 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=40.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHHc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFH 253 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1208)
...++-|+|.+|+||||+|.+++....... .=..++||+....++..++. ++++..
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 467999999999999999999986432211 11378999999888877654 444443
No 353
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.58 E-value=0.15 Score=54.83 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=46.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccC-----CC--CCCcHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKM-----EQ--STSSISLLETR 269 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~-----~~--~~~~~~~l~~~ 269 (1208)
+..+|.|+|.+|+|||||+..+.+ ..+.... ++.+. .+..+..+ .+.++..+.. .. -..+...+.+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 488999999999999999999987 3333332 22222 11122221 1222332211 10 02234445555
Q ss_pred HHHHhcCCceEEEEecCC
Q 000962 270 LLEFLTGQRFLLVLDDVW 287 (1208)
Q Consensus 270 l~~~L~~kr~LlVlDdvw 287 (1208)
+.......-=++|+++|-
T Consensus 177 l~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 177 APRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHhhcCCcEEEEECCC
Confidence 555434444678899984
No 354
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.57 E-value=0.36 Score=51.25 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=62.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccC-------------C------
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKM-------------E------ 257 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~-------------~------ 257 (1208)
.-.++.|.|.+|+||||+|.++.... . ..-..++||+.... ..++.+. ++.++.. +
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 45799999999999999999876521 2 22356788877443 3333322 1111100 0
Q ss_pred ---C--CCCcHHHHHHHHHHHhcC---CceEEEEecCCC---CCccChHHHHHhhhC--CCCCcEEEEecCC
Q 000962 258 ---Q--STSSISLLETRLLEFLTG---QRFLLVLDDVWN---EDYRKWEPLQQLLKQ--GHKGSRVLVTSRT 316 (1208)
Q Consensus 258 ---~--~~~~~~~l~~~l~~~L~~---kr~LlVlDdvw~---~~~~~~~~l~~~l~~--~~~gs~iivTtR~ 316 (1208)
. ...+.+++..++++..+. +.-.+|+|.+-. ++......+...+.. ...|..+|+|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 0 023456666666665543 345889998732 111111111111111 2357788888763
No 355
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.55 E-value=0.026 Score=53.70 Aligned_cols=20 Identities=55% Similarity=0.785 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHhc
Q 000962 201 IPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~ 220 (1208)
|+|.|..|+||||+|+++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 356
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.52 E-value=0.29 Score=48.96 Aligned_cols=118 Identities=21% Similarity=0.107 Sum_probs=65.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC---ChHHHHHHH--HHHc--ccC-CCCC-C------c
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY---DLPRILKGM--IEFH--SKM-EQST-S------S 262 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~---~~~~~~~~i--~~~~--~~~-~~~~-~------~ 262 (1208)
...|-|+|-.|-||||.|..++- +...+=-.+..|-+-+.. .....+..+ ++.. +.. .... . .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 45889999999999999988776 332222233344433322 223333221 0000 000 0000 1 1
Q ss_pred HHHHHHHHHHHhcCCc-eEEEEecCC---CCCccChHHHHHhhhCCCCCcEEEEecCCh
Q 000962 263 ISLLETRLLEFLTGQR-FLLVLDDVW---NEDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 263 ~~~l~~~l~~~L~~kr-~LlVlDdvw---~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1208)
.....+..++.+...+ =|+|||.+- +...-+.+.+...+.....+.-||+|=|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122333445554444 599999982 122245678888887767778999999975
No 357
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.51 E-value=0.023 Score=52.14 Aligned_cols=28 Identities=39% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHhcccccccccce
Q 000962 201 IPIIGMPGLGKTTLAQLLFNEERVREHFES 230 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 230 (1208)
|-|+|.+|+||||+|+.++. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999998 56677754
No 358
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.49 E-value=0.1 Score=53.83 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=50.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHHcccCCC-----CCC-c-H------
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKMEQ-----STS-S-I------ 263 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-----~~~-~-~------ 263 (1208)
-.-++|.|.+|+|||+|+..+.+.. . -+.++++-+.+.. .+.++.+++...-..... ..+ . .
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~--~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ--D--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC--T--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc--c--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3578999999999999999998843 2 2344777776553 344555555332111100 011 1 1
Q ss_pred ---HHHHHHHHHHhcCCceEEEEecC
Q 000962 264 ---SLLETRLLEFLTGQRFLLVLDDV 286 (1208)
Q Consensus 264 ---~~l~~~l~~~L~~kr~LlVlDdv 286 (1208)
-.+.+.++. ++|++|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 122333444 699999999999
No 359
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.49 E-value=0.3 Score=51.17 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=65.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccc-----cc------ccc---ceeEEEEecCCC--C----h---------------
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEER-----VR------EHF---ESRMWVCVTVDY--D----L--------------- 242 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~~~~~~--~----~--------------- 242 (1208)
-.+++|+|+.|.|||||.+.+.--.+ +. ..+ ..+.||.=...+ + +
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36899999999999999999987211 10 001 234555321110 1 1
Q ss_pred -------HHHHHHHHHHcccCCCC-----CCcHHHHHH-HHHHHhcCCceEEEEecC----CCCCccChHHHHHhhhCCC
Q 000962 243 -------PRILKGMIEFHSKMEQS-----TSSISLLET-RLLEFLTGQRFLLVLDDV----WNEDYRKWEPLQQLLKQGH 305 (1208)
Q Consensus 243 -------~~~~~~i~~~~~~~~~~-----~~~~~~l~~-~l~~~L~~kr~LlVlDdv----w~~~~~~~~~l~~~l~~~~ 305 (1208)
.+...+.++.++..... .-+-.+.++ .|.+.|..+.=|+|||.= +.......-.+...+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 12333334433322111 122223333 456778889999999963 21221223333333433
Q ss_pred CCcEEEEecCChhHHhh
Q 000962 306 KGSRVLVTSRTARVSQI 322 (1208)
Q Consensus 306 ~gs~iivTtR~~~v~~~ 322 (1208)
.|..||++|-+-.....
T Consensus 188 eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 188 EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCCEEEEEeCCcHHhHh
Confidence 38889999998655443
No 360
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.45 E-value=0.087 Score=57.58 Aligned_cols=84 Identities=18% Similarity=0.079 Sum_probs=50.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC-----CCcHHHHHHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLLETRL 270 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~l 270 (1208)
..-+++-|+|..|+||||||..+.. ...+.-..++||+....++.... +.++..... .+..++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 3457999999999999999999887 44444566889999887765432 333322211 23334444444
Q ss_pred HHHhc-CCceEEEEecC
Q 000962 271 LEFLT-GQRFLLVLDDV 286 (1208)
Q Consensus 271 ~~~L~-~kr~LlVlDdv 286 (1208)
.+.++ +.--++|+|-|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 44444 44568999988
No 361
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.17 Score=55.73 Aligned_cols=81 Identities=23% Similarity=0.259 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC-----CCcHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLLETRLL 271 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~l~ 271 (1208)
+-.+|.|-|-+|+|||||..+++. +....- .+.+|+-.+. ..++ +--++.++..... ..+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 457999999999999999999998 444333 5677665443 3333 3334555533322 455666666555
Q ss_pred HHhcCCceEEEEecC
Q 000962 272 EFLTGQRFLLVLDDV 286 (1208)
Q Consensus 272 ~~L~~kr~LlVlDdv 286 (1208)
+ .+.-++|+|-+
T Consensus 166 ~---~~p~lvVIDSI 177 (456)
T COG1066 166 Q---EKPDLVVIDSI 177 (456)
T ss_pred h---cCCCEEEEecc
Confidence 4 67889999988
No 362
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.44 E-value=0.19 Score=54.12 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC
Q 000962 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS 259 (1208)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~ 259 (1208)
.+.++..+... .+..-++|+|..|.|||||.+.++.. +. .....+++.-.+- ...+-.+++..........
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKV-GIVDERSEIAGCVNGVPQH 168 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEe-ecchhHHHHHHHhcccccc
Confidence 44455555432 23578999999999999999999972 22 2223333321110 0001112332222111000
Q ss_pred --------CCcHHHHHHHHHHHh-cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHh
Q 000962 260 --------TSSISLLETRLLEFL-TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1208)
Q Consensus 260 --------~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1208)
.+.... ..-+...+ ...+=++++|.+-. .+.+..+...+ ..|..||+||-+..+..
T Consensus 169 ~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 001001 11122222 25788999999843 23344554444 35778999999766644
No 363
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.074 Score=50.41 Aligned_cols=44 Identities=32% Similarity=0.388 Sum_probs=32.7
Q ss_pred EEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccC
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKM 256 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 256 (1208)
+|.|-|.+|.||||+|+.+++....+ -.+...++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------------~vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------------LVSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------------eeeccHHHHHHHHHcCCC
Confidence 68999999999999999999732211 123457888998877643
No 364
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.42 E-value=0.046 Score=59.13 Aligned_cols=93 Identities=19% Similarity=0.295 Sum_probs=46.7
Q ss_pred HHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC-
Q 000962 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS- 259 (1208)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~- 259 (1208)
..+++.+.... +-+.++|+.|+|||++++...... ....| ...-+.++...+...+ +++++.-......
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l-~~~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSL-DSDKY-LVITINFSAQTTSNQL-QKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCS-TTCCE-EEEEEES-TTHHHHHH-HHCCCTTECECTTE
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccC-Ccccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCC
Confidence 44556555543 456899999999999999988631 11122 1233444443333332 2222221111000
Q ss_pred CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccC
Q 000962 260 TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK 293 (1208)
Q Consensus 260 ~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~ 293 (1208)
.... -.+|+.++++||+--...+.
T Consensus 93 ~~gP----------~~~k~lv~fiDDlN~p~~d~ 116 (272)
T PF12775_consen 93 VYGP----------PGGKKLVLFIDDLNMPQPDK 116 (272)
T ss_dssp EEEE----------ESSSEEEEEEETTT-S---T
T ss_pred CCCC----------CCCcEEEEEecccCCCCCCC
Confidence 0000 14789999999995444333
No 365
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.42 E-value=0.32 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567999999999999999986
No 366
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.41 E-value=0.15 Score=58.28 Aligned_cols=86 Identities=22% Similarity=0.301 Sum_probs=47.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccC-----CCCCC-cH-----HHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKM-----EQSTS-SI-----SLL 266 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~-----~~~~~-~~-----~~l 266 (1208)
-..++|+|..|+|||||++.+... ......++|....+..++.++....+...... ..... .. ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l---~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA---DAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---CCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 458999999999999999988862 22233445544334445554444333322110 00111 11 111
Q ss_pred HHHHHHHh--cCCceEEEEecC
Q 000962 267 ETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 267 ~~~l~~~L--~~kr~LlVlDdv 286 (1208)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 12233333 589999999999
No 367
>PRK06547 hypothetical protein; Provisional
Probab=94.40 E-value=0.051 Score=54.22 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
...+|+|.|..|+||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999873
No 368
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.40 E-value=0.18 Score=53.36 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+..+|+|.|..|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 369
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.37 E-value=0.21 Score=53.29 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=35.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
....++.|.|.+|+|||++|.++.... . ..-..++||+... +..++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 456799999999999999999876521 2 2345678888765 445555543
No 370
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.34 E-value=0.26 Score=52.01 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=31.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
..++.|.|..|+||||+|.+++... .+.. ..+++++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4599999999999999987666532 1222 3456666433 445555555
No 371
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.33 E-value=0.16 Score=60.90 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=73.7
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
...++|+...+.++.+.+..-. ..-.-|.|+|..|+|||++|+.+++... ..-...+.|++..-.. ..+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e~- 256 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAES- 256 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHHH-
Confidence 3568999999888887776543 2234678999999999999999997322 1112334555554322 22221
Q ss_pred HHHcccCCCC--CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000962 250 IEFHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1208)
Q Consensus 250 ~~~~~~~~~~--~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1208)
.+.+.... ..........+.. .+ .=-|+||+|..........+...+..+. ...|||.||..
T Consensus 257 --~lfG~~~g~~~ga~~~~~g~~~~--a~-gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 257 --ELFGHVKGAFTGAISNRSGKFEL--AD-GGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred --HhcCccccccCCCcccCCcchhh--cC-CCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 11111100 0000000001111 22 2347899997666566677777765432 24589988864
No 372
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.31 E-value=0.049 Score=52.67 Aligned_cols=36 Identities=36% Similarity=0.373 Sum_probs=27.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEE
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC 235 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (1208)
..||-|.|.+|.||||||+++.. +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46899999999999999999998 4544444555554
No 373
>PRK13948 shikimate kinase; Provisional
Probab=94.31 E-value=0.26 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
....|.++|+.|+||||+++.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999987
No 374
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.31 E-value=0.03 Score=46.11 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 375
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.26 E-value=0.18 Score=53.59 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=53.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhccccc--ccccceeEEEEecCCCC-hHHHHHHHHHHcccCCC-------CCCcHH---
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERV--REHFESRMWVCVTVDYD-LPRILKGMIEFHSKMEQ-------STSSIS--- 264 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~-------~~~~~~--- 264 (1208)
-..++|.|-.|+|||+|+..+.++... +.+-+.++++-+.+..+ +.++..++.+.-..... +.....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 457899999999999999998874321 12346778888876653 45555555443111100 011111
Q ss_pred --HHHHHHHHHh--c-CCceEEEEecC
Q 000962 265 --LLETRLLEFL--T-GQRFLLVLDDV 286 (1208)
Q Consensus 265 --~l~~~l~~~L--~-~kr~LlVlDdv 286 (1208)
...-.+.+++ + ++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122234444 3 78999999999
No 376
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.17 E-value=0.039 Score=57.66 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..+|+|+|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 377
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.17 E-value=0.36 Score=50.29 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=36.6
Q ss_pred HHHHhcCCceEEEEecCCC-CCccChHHHHHhhhC-CCCCcEEEEecCChhHHhhhCCCCcEeCCCC
Q 000962 270 LLEFLTGQRFLLVLDDVWN-EDYRKWEPLQQLLKQ-GHKGSRVLVTSRTARVSQIMGIRSPYLLEYL 334 (1208)
Q Consensus 270 l~~~L~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L 334 (1208)
+...+..+.-++++|+--. -|....+.+...+.. ...|..||++|.+.+.... ...+.++..
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPF 201 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCc
Confidence 3445556778999998732 122333455555542 2346678999888765543 566666553
No 378
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.17 E-value=0.25 Score=56.39 Aligned_cols=51 Identities=29% Similarity=0.316 Sum_probs=35.5
Q ss_pred CCccccchhhHHHHHHHHc-------C--CCCC-C--CCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 170 TANVFGRDDDKERILHMLL-------S--DEFD-E--EDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~-------~--~~~~-~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+||.++.++.+...+. . .... . ......|.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 4568999999888865541 1 0100 0 01135789999999999999999986
No 379
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.2 Score=57.20 Aligned_cols=86 Identities=23% Similarity=0.269 Sum_probs=45.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..+++++|..|+||||++.+++.........+.+.++.. +.+.. .+-+....+.++.......+..++...+. .++
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~-d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTT-DSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-CCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 469999999999999999988763211222233444433 23332 22233444444443333333444433332 244
Q ss_pred CCceEEEEecC
Q 000962 276 GQRFLLVLDDV 286 (1208)
Q Consensus 276 ~kr~LlVlDdv 286 (1208)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 45666765
No 380
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.17 Score=61.80 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=52.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC--hHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD--LPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..||+++|+.|+||||.+.+++...........+..|+.. .+. ..+-++...+.++.......+..++.+.+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4799999999999999999998732212212344555443 333 3344555556665444334456666555543 44
Q ss_pred CCceEEEEecCC
Q 000962 276 GQRFLLVLDDVW 287 (1208)
Q Consensus 276 ~kr~LlVlDdvw 287 (1208)
++ =+|++|=.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 377778764
No 381
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.16 E-value=0.29 Score=47.75 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 382
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.11 Score=60.71 Aligned_cols=72 Identities=28% Similarity=0.217 Sum_probs=47.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC--ChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY--DLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..-|.|.|..|+|||+||+++++... +...-.+.+|+++.-. ..+.+++. +...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHHh
Confidence 45688999999999999999998433 4455556677776432 12222211 2223344456
Q ss_pred CCceEEEEecCC
Q 000962 276 GQRFLLVLDDVW 287 (1208)
Q Consensus 276 ~kr~LlVlDdvw 287 (1208)
..+-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 788999999993
No 383
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.84 Score=46.35 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=96.7
Q ss_pred ccccc-hhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 172 NVFGR-DDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 172 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
.+||+ +..+.+|.+.+.-+-. -+-.+.+-+.++|++|.|||-||++||+ .....|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVah-------ht~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH-------HTDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHh-------hcceEEEEechH----
Confidence 45654 6667776665432210 1124466788999999999999999997 234566777643
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCC-----------ccChHHHHHhh---hC--CCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEF-LTGQRFLLVLDDVWNED-----------YRKWEPLQQLL---KQ--GHK 306 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l---~~--~~~ 306 (1208)
++.+..+.. -..+.+.+.-. -..-+..|+.|.+++-. .+........+ .. ..+
T Consensus 216 elvqk~ige----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ELVQKYIGE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred HHHHHHhhh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 222222111 01112222111 13557888888884311 11111222222 21 235
Q ss_pred CcEEEEecCChhHHhh-----hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 307 GSRVLVTSRTARVSQI-----MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 307 gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
.-+||+.|..-++... -..+..++..+-+++.-.++++-+.-...-. ..-+++.+|.++....|.--.++.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~----rgi~l~kiaekm~gasgaevk~vc 361 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT----RGINLRKIAEKMPGASGAEVKGVC 361 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh----cccCHHHHHHhCCCCccchhhhhh
Confidence 5678876654444322 1234567777777777777776554322111 223445444444333333334444
Q ss_pred HHHhhh
Q 000962 382 AIAGFL 387 (1208)
Q Consensus 382 ~~~~~l 387 (1208)
+-|++.
T Consensus 362 teagm~ 367 (404)
T KOG0728|consen 362 TEAGMY 367 (404)
T ss_pred hhhhHH
Confidence 555543
No 384
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.11 E-value=0.14 Score=57.71 Aligned_cols=23 Identities=48% Similarity=0.655 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 34899999999999999999875
No 385
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.09 E-value=0.17 Score=54.51 Aligned_cols=21 Identities=38% Similarity=0.776 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|.++|++|+||||+|+++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 386
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.2 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..++.|.|+.|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999984
No 387
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.06 E-value=0.042 Score=57.24 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+..+|+|+|.+|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 388
>PTZ00035 Rad51 protein; Provisional
Probab=94.05 E-value=0.39 Score=53.79 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=39.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccc----cccceeEEEEecCCCChHHHHHHHHHHcc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVR----EHFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1208)
....++.|+|..|+|||||+..++-..... ..=..++||+....++.+++ .++++..+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 456799999999999999999887532211 11235679998887777664 44454443
No 389
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.03 E-value=0.26 Score=50.05 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 390
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.03 E-value=1 Score=50.42 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=44.6
Q ss_pred hHHHHHHHHcCCCC-C--CCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH--HHHHHHHHHc
Q 000962 179 DKERILHMLLSDEF-D--EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP--RILKGMIEFH 253 (1208)
Q Consensus 179 ~~~~l~~~L~~~~~-~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~~ 253 (1208)
-.++++++|..... . ....+.||-.+|.-|.||||-|.++++ ..++ ....+-+.+.+.+.+. +-++.+.+++
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHc
Confidence 34667777764211 1 134578999999999999999999988 4444 3333334444444433 3355555555
Q ss_pred cc
Q 000962 254 SK 255 (1208)
Q Consensus 254 ~~ 255 (1208)
+.
T Consensus 155 ~v 156 (451)
T COG0541 155 GV 156 (451)
T ss_pred CC
Confidence 43
No 391
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.01 E-value=0.56 Score=48.42 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHhcCCceEEEEecCC-CCCccChHHHHHhhhCC--CCCcEEEEecCChhHHhhhCCCCcEeC
Q 000962 268 TRLLEFLTGQRFLLVLDDVW-NEDYRKWEPLQQLLKQG--HKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1208)
Q Consensus 268 ~~l~~~L~~kr~LlVlDdvw-~~~~~~~~~l~~~l~~~--~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1208)
-.+.+.|-..+-+|+.|+== +-|...-+.+...+... ..|..||+.|-++.+|..+ +..+.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 34667778888899999641 11222334455555432 4577899999999999854 444444
No 392
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.98 E-value=0.13 Score=55.28 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=18.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+.|.|.|.+|+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999873
No 393
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.96 E-value=0.15 Score=57.50 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=61.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
...|.|.|..|.||||+.+.+.. .+.......++. +.+... .........+...+ .........+.++..|...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E--~~~~~~~~~i~q~e-vg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIE--YVHRNKRSLINQRE-VGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChh--hhccCccceEEccc-cCCCCcCHHHHHHHhhccC
Confidence 46899999999999999999886 344444444443 222211 11000000011001 1111223456677778888
Q ss_pred ceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHH
Q 000962 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVS 320 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 320 (1208)
.=.|++|.+-+. +.+.. ++.....|..|+.|.-...+.
T Consensus 196 pd~i~vgEird~--~~~~~---~l~aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVEL---ALTAAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCCH--HHHHH---HHHHHHcCCcEEEEEcCCCHH
Confidence 899999999432 33333 233334566677776654443
No 394
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.95 E-value=0.34 Score=50.08 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-.+++|+|..|.|||||.+.++-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999998874
No 395
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.92 E-value=0.09 Score=52.68 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 396
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.87 E-value=0.25 Score=53.33 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=54.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
..+|.|.|..|.||||++..+.+ .+...-..++ .+.+..... +..+ .+......... ...+.++..|+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~--~i~~~~~~ii--tiEdp~E~~--~~~~-~q~~v~~~~~~---~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNII--TVEDPVEYQ--IPGI-NQVQVNEKAGL---TFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEE--EECCCceec--CCCc-eEEEeCCcCCc---CHHHHHHHHhccC
Confidence 45899999999999999998865 2322111222 232221110 0000 11111111111 3455666777777
Q ss_pred ceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhH
Q 000962 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV 319 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 319 (1208)
.=.|+++++.+. +....++.....|..++-|..-.++
T Consensus 150 PD~i~vgEiR~~-----e~a~~~~~aa~tGh~v~tTlHa~~~ 186 (264)
T cd01129 150 PDIIMVGEIRDA-----ETAEIAVQAALTGHLVLSTLHTNDA 186 (264)
T ss_pred CCEEEeccCCCH-----HHHHHHHHHHHcCCcEEEEeccCCH
Confidence 889999999443 2223333323345556555554433
No 397
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.87 E-value=0.057 Score=56.61 Aligned_cols=20 Identities=45% Similarity=0.833 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHhc
Q 000962 201 IPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~ 220 (1208)
|.|.|++|+||||+|+.++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999987
No 398
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.84 E-value=0.45 Score=55.26 Aligned_cols=142 Identities=20% Similarity=0.271 Sum_probs=80.0
Q ss_pred hhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHH-HHHHhcccccccccceeEEEEecCCCChH--HHHHHHHHHcc
Q 000962 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTL-AQLLFNEERVREHFESRMWVCVTVDYDLP--RILKGMIEFHS 254 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtL-a~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~~~ 254 (1208)
.-.+++++.+.+. .||.|||-.|.||||- |+.+|.+- |..---|-+.+...+. .+.+.+.++++
T Consensus 359 ~~R~~ll~~ir~n--------~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 359 ACRDQLLSVIREN--------QVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred HHHHHHHHHHhhC--------cEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 3455666666554 4999999999999985 56566542 2111134455554443 34555666654
Q ss_pred cCCCC--------------------CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhh---CCCCCcEEE
Q 000962 255 KMEQS--------------------TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLK---QGHKGSRVL 311 (1208)
Q Consensus 255 ~~~~~--------------------~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~ii 311 (1208)
..... ..+--.+.+.|.+..-+|--.||+|...... ...+.+...+. .....-|+|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEE
Confidence 32111 1122234445555444566799999996543 33444444443 234567999
Q ss_pred EecCCh---hHHhhhCCCCcEeCCC
Q 000962 312 VTSRTA---RVSQIMGIRSPYLLEY 333 (1208)
Q Consensus 312 vTtR~~---~v~~~~~~~~~~~l~~ 333 (1208)
||+-.. ..+..+|....+.+++
T Consensus 505 VtSATm~a~kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCPQFTIPG 529 (1042)
T ss_pred EeeccccHHHHHHHhCCCceeeecC
Confidence 998753 4555566444444444
No 399
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.83 E-value=0.2 Score=58.27 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=45.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..|++++|+.|+||||++.+++.....+..-..+..|+.. .+.+ .+-++...+..+.......+..+....+ ..++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 4699999999999999999999733222222234555543 3332 2223333444433322222222222222 2334
Q ss_pred CCceEEEEecCC
Q 000962 276 GQRFLLVLDDVW 287 (1208)
Q Consensus 276 ~kr~LlVlDdvw 287 (1208)
++ ..+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 44 466777763
No 400
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.82 E-value=0.19 Score=54.24 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=30.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1208)
.-.++.|.|.+|+||||+|.+++... .+ .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 45799999999999999999986632 12 234678888864
No 401
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.82 E-value=0.29 Score=57.83 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=41.3
Q ss_pred cccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEE
Q 000962 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC 235 (1208)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (1208)
++--..-++++..||...- .+....+++.+.|++|+||||.++.+++. -.|+.+-|..
T Consensus 21 LavhkkKv~eV~~wl~~~~-~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMF-SGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHh-ccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 3334566788888887542 12334679999999999999999999873 2366666764
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.76 E-value=0.11 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999998875
No 403
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.73 E-value=0.091 Score=53.06 Aligned_cols=21 Identities=52% Similarity=0.648 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 404
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.72 E-value=0.2 Score=55.72 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=64.4
Q ss_pred hhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh--HHHHHHHHHHccc
Q 000962 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL--PRILKGMIEFHSK 255 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~~~~ 255 (1208)
+....+..++.+.. -..+-+||++||+.||||||-..+++........=..+..|+.. .|.+ .+-++..++-++.
T Consensus 185 ~~l~~~~~~~~~~~--~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD-tYRIGA~EQLk~Ya~im~v 261 (407)
T COG1419 185 EKLRKLLLSLIENL--IVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD-TYRIGAVEQLKTYADIMGV 261 (407)
T ss_pred HHHHHHHHhhcccc--ccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec-cchhhHHHHHHHHHHHhCC
Confidence 33444455554431 11236899999999999997655555422212233456666653 3333 3345555666665
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC--ccChHHHHHhhh
Q 000962 256 MEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED--YRKWEPLQQLLK 302 (1208)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~--~~~~~~l~~~l~ 302 (1208)
+-....+..++...+.. ++++ =+|.+|=+-... ....+++...+.
T Consensus 262 p~~vv~~~~el~~ai~~-l~~~-d~ILVDTaGrs~~D~~~i~el~~~~~ 308 (407)
T COG1419 262 PLEVVYSPKELAEAIEA-LRDC-DVILVDTAGRSQYDKEKIEELKELID 308 (407)
T ss_pred ceEEecCHHHHHHHHHH-hhcC-CEEEEeCCCCCccCHHHHHHHHHHHh
Confidence 55556667777666644 3444 455567664321 122344444444
No 405
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.72 E-value=0.88 Score=47.39 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=34.5
Q ss_pred HHHHhcCCceEEEEecCCCC-CccChHHHHHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeC
Q 000962 270 LLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1208)
Q Consensus 270 l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1208)
+.+.+..++=++++|+--.. +....+.+...+.....|..||++|.+.+.+.. ++..+.+
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~--~d~v~~l 196 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDKILVM 196 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 44445567788899987321 223344455555443346678888887766543 3444444
No 406
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.70 E-value=0.2 Score=57.17 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..+|.++|..|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999886
No 407
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.68 E-value=0.15 Score=57.42 Aligned_cols=50 Identities=30% Similarity=0.448 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHcCC--------CCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 171 ANVFGRDDDKERILHMLLSD--------EFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+||.++.+..+...+... ........+-|.++|++|+|||++|+.++.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 45889999888887666532 000112246788999999999999999997
No 408
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.67 E-value=0.22 Score=56.75 Aligned_cols=85 Identities=13% Similarity=0.232 Sum_probs=48.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHHcccCCC-----CCCc--HH-----
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEFHSKMEQ-----STSS--IS----- 264 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~-----~~~~--~~----- 264 (1208)
-..++|+|..|+|||||++.++.. . ..+.++.+-+.+... +.++..+++..-..... ..++ ..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 457999999999999999999862 1 224555666655543 34444444332111100 0111 11
Q ss_pred HHHHHHHHHh--cCCceEEEEecC
Q 000962 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 265 ~l~~~l~~~L--~~kr~LlVlDdv 286 (1208)
.....+.+++ +++++|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1112233444 689999999999
No 409
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.66 E-value=0.13 Score=53.57 Aligned_cols=66 Identities=29% Similarity=0.344 Sum_probs=37.7
Q ss_pred hHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
+..++++.+.... ++..+|+|.|.+|+|||||.-++....+-+++=-.++=|+-|..++--.++-+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 4455666665432 45789999999999999999888874333333334455555666665555433
No 410
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.27 Score=48.60 Aligned_cols=118 Identities=18% Similarity=0.178 Sum_probs=61.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC--hHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD--LPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
-.+++|+|..|.|||||++.+.... ......+++....... ..+. ...+.-...-. .-+...-.+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~qlS-~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQLS-GGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHH----HhceEEEeeCC-HHHHHHHHHHHHHh
Confidence 3589999999999999999998732 2334445543321111 1111 11111100001 11122223455556
Q ss_pred CCceEEEEecCCCC-CccChHHHHHhhhCC-CCCcEEEEecCChhHHhhh
Q 000962 276 GQRFLLVLDDVWNE-DYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQIM 323 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~ 323 (1208)
...-++++|+.-.. |......+...+... ..+..||++|.+.+....+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 67889999988321 112233444433321 1246788888887666543
No 411
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.64 E-value=0.52 Score=48.81 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=35.8
Q ss_pred HHHHhcCCceEEEEecCCCC-CccChH-HHHHhhhCCC-C-CcEEEEecCChhHHhhhCCCCcEeC
Q 000962 270 LLEFLTGQRFLLVLDDVWNE-DYRKWE-PLQQLLKQGH-K-GSRVLVTSRTARVSQIMGIRSPYLL 331 (1208)
Q Consensus 270 l~~~L~~kr~LlVlDdvw~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtR~~~v~~~~~~~~~~~l 331 (1208)
+...+..+.-++++|+.-.. +....+ .+...+.... . |..||++|.+.+.... ++..+.+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 45566678899999998321 222234 4555554322 2 5668889988776643 3445544
No 412
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.61 E-value=0.71 Score=48.72 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999976
No 413
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.59 E-value=1.1 Score=45.13 Aligned_cols=35 Identities=34% Similarity=0.302 Sum_probs=26.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEE
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC 235 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (1208)
..|++|+|+.|.|||||.+.+..=+. .=...+||.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEEC
Confidence 45999999999999999999975332 223455654
No 414
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.57 E-value=0.076 Score=57.97 Aligned_cols=50 Identities=26% Similarity=0.444 Sum_probs=43.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..|+|.++.++++++.+..........-+|+.++|+.|.||||||..+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999876644456678999999999999999999876
No 415
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.54 E-value=0.092 Score=53.20 Aligned_cols=43 Identities=35% Similarity=0.527 Sum_probs=29.3
Q ss_pred EEEEEecCCchHHHHHHHHhcccccccc-cceeEEEEecCCCChHH
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVREH-FESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~ 244 (1208)
.|+|+|-||+||||+|..++.. -...+ | .+.-|++..++++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~-~VLvVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGY-NVLVVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCc-eEEEEeCCCCCChHH
Confidence 5899999999999999885542 22222 4 355667766666543
No 416
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.51 E-value=0.3 Score=56.05 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=50.7
Q ss_pred cEEEEEEecCCchHHHHH-HHHhccccc-----ccccceeEEEEecCCCChHHHHHHHHHHcccCCCC------CCc---
Q 000962 198 AFVIPIIGMPGLGKTTLA-QLLFNEERV-----REHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS------TSS--- 262 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~------~~~--- 262 (1208)
-..++|.|-.|+|||+|| ..+.+...+ .++-+.++++-+.+..+...-+.+.+++-+..... .++
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 457899999999999997 555664322 12345678888887764333233333333211111 111
Q ss_pred --------HHHHHHHHHHHhcCCceEEEEecC
Q 000962 263 --------ISLLETRLLEFLTGQRFLLVLDDV 286 (1208)
Q Consensus 263 --------~~~l~~~l~~~L~~kr~LlVlDdv 286 (1208)
.-.+.+.+++ +++.+|+|+||+
T Consensus 269 ~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDL 298 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMN--RGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEEEcCc
Confidence 1122333333 589999999999
No 417
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.50 E-value=0.51 Score=50.70 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=47.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHH--HHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRI--LKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
..+++++|.+|+||||+++.+... ....=..+.+++.. .+....+ ++...+.++.......+...+.+.+.. ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D-~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~-l~ 150 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY-FK 150 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecC-CCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHH-HH
Confidence 468999999999999999988763 22211244556554 2222221 222222232221112344555544433 33
Q ss_pred --CCceEEEEecCCC
Q 000962 276 --GQRFLLVLDDVWN 288 (1208)
Q Consensus 276 --~kr~LlVlDdvw~ 288 (1208)
.+.=++++|..-.
T Consensus 151 ~~~~~D~ViIDt~Gr 165 (270)
T PRK06731 151 EEARVDYILIDTAGK 165 (270)
T ss_pred hcCCCCEEEEECCCC
Confidence 2456888998844
No 418
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.48 E-value=0.7 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|.|..|.|||||.+.++.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 419
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.46 E-value=0.36 Score=47.24 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 420
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.45 E-value=0.054 Score=54.15 Aligned_cols=24 Identities=58% Similarity=0.685 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..+|+|-||=|+||||||+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 421
>PRK00625 shikimate kinase; Provisional
Probab=93.42 E-value=0.053 Score=54.12 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|.++||+|+||||+|+.+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 422
>PRK03839 putative kinase; Provisional
Probab=93.41 E-value=0.054 Score=55.05 Aligned_cols=22 Identities=50% Similarity=0.905 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 423
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.14 Score=52.20 Aligned_cols=54 Identities=26% Similarity=0.277 Sum_probs=36.1
Q ss_pred cccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhccccccccc
Q 000962 173 VFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF 228 (1208)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 228 (1208)
+-|=.+.++++.+....+-- -+-+..+-|..+|++|.|||-+|++|+| +....|
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 34556677776655432210 1123466788999999999999999999 555444
No 424
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.40 E-value=0.19 Score=61.67 Aligned_cols=84 Identities=18% Similarity=0.077 Sum_probs=55.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC-----CCcHHHHHHHH
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLLETRL 270 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~l 270 (1208)
..-+++-|+|.+|+||||||.+++.. ....=..++||+....++.. .++.++..... ....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 34678999999999999999886652 22233567899988877732 45555543211 33344455555
Q ss_pred HHHhc-CCceEEEEecC
Q 000962 271 LEFLT-GQRFLLVLDDV 286 (1208)
Q Consensus 271 ~~~L~-~kr~LlVlDdv 286 (1208)
.+.++ ++--|||+|-+
T Consensus 131 ~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 131 DMLIRSGALDIVVIDSV 147 (790)
T ss_pred HHHhhcCCCeEEEEcch
Confidence 55554 45668999998
No 425
>PRK05973 replicative DNA helicase; Provisional
Probab=93.39 E-value=0.36 Score=50.58 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=33.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
+..++.|.|.+|+|||++|.++.... .+ +=..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-MK-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEEeCC--HHHHHHHH
Confidence 35689999999999999999987632 22 2345677776554 44554444
No 426
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.38 E-value=0.11 Score=54.86 Aligned_cols=19 Identities=42% Similarity=0.497 Sum_probs=16.8
Q ss_pred EEecCCchHHHHHHHHhcc
Q 000962 203 IIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 203 I~G~gGiGKTtLa~~v~~~ 221 (1208)
|+|++|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999999884
No 427
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.37 E-value=0.53 Score=49.66 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-.+++|+|..|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 428
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.37 E-value=0.4 Score=56.08 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC
Q 000962 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1208)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1208)
+..+-++|... -..-.++.|.|.+|+|||||+.+++.. ....=..++||+..+
T Consensus 80 i~~LD~vLgGG----i~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGG----IVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCC----ccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 34444544322 244679999999999999999999763 222223577887654
No 429
>PRK04040 adenylate kinase; Provisional
Probab=93.36 E-value=0.067 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 430
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.31 E-value=0.51 Score=51.81 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=35.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGM 249 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 249 (1208)
+-..++|.|..|+|||+|++++.+.. +-+.++++-+.+..+ +.+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 34588999999999999999999732 235677887766543 45555554
No 431
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.53 Score=47.79 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=37.0
Q ss_pred HHHHHHhcCCceEEEEecCCCC-CccChHHHHHhhhC-CCCCcEEEEecCChhHHhhhCCCCcE
Q 000962 268 TRLLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQ-GHKGSRVLVTSRTARVSQIMGIRSPY 329 (1208)
Q Consensus 268 ~~l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~~~~~~ 329 (1208)
..|.+.+-=++-+.|||..++- |.+..+.+...+.. ...|+-++|.|..++++.....+.++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3455555567789999988542 11223333332221 24577788888889998877655444
No 432
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.29 E-value=0.061 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+.|.+.|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999999987
No 433
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.29 E-value=0.28 Score=54.37 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+..+++++|++|+||||++.+++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999873
No 434
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=1.9 Score=45.30 Aligned_cols=188 Identities=17% Similarity=0.236 Sum_probs=95.6
Q ss_pred CccccchhhHHHHHHHHcCCC------CCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSDE------FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..+-|.+..++.+.+.+.-+- .+.....+-|.++|++|.||+-||++|+.. .... |++||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnST-----FFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANST-----FFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCCc-----eEEeehH----H
Confidence 456688888888877654221 022455788999999999999999999983 2233 3445432 1
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCC-------CccChHHHHHhh-----hCC--CCCcE
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNE-------DYRKWEPLQQLL-----KQG--HKGSR 309 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~-------~~~~~~~l~~~l-----~~~--~~gs~ 309 (1208)
+...- ++ +.+.+...|.+.- +.|...|++|.|+.. +.+.-..|..-| ..+ ..|.-
T Consensus 202 LvSKW---mG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 202 LVSKW---MG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred HHHHH---hc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 11110 11 1123333333332 478999999999431 011122232222 112 23444
Q ss_pred EEEecCChhHHhhh---CCCCcEeCCCCChhHHH-HHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCC---hHHHHH
Q 000962 310 VLVTSRTARVSQIM---GIRSPYLLEYLPEDQCW-SIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL---PLAVKA 382 (1208)
Q Consensus 310 iivTtR~~~v~~~~---~~~~~~~l~~L~~~~~~-~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~---PLai~~ 382 (1208)
|+-.|..+-+.... .....+-+ +|.+..|. .+|+-+.+.....- ..++ -++++++..|. -.+|.+
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~L---T~~d----~~eL~~kTeGySGsDisivV 343 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVL---TEQD----FKELARKTEGYSGSDISIVV 343 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcccc---chhh----HHHHHhhcCCCCcCceEEEe
Confidence 45567766544321 11223333 45555554 46766665443321 1233 34555555443 344444
Q ss_pred HHhhh
Q 000962 383 IAGFL 387 (1208)
Q Consensus 383 ~~~~l 387 (1208)
--.+|
T Consensus 344 rDalm 348 (439)
T KOG0739|consen 344 RDALM 348 (439)
T ss_pred hhhhh
Confidence 44444
No 435
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.28 E-value=0.36 Score=56.49 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=30.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD 239 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 239 (1208)
.-.++.|.|.+|+|||||+.+++.. ...+-..++|++..+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc
Confidence 4569999999999999999999873 2222245678876543
No 436
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.27 E-value=0.31 Score=56.03 Aligned_cols=89 Identities=22% Similarity=0.236 Sum_probs=52.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHHcccCC-------CCCCcHH----
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKME-------QSTSSIS---- 264 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-------~~~~~~~---- 264 (1208)
+-..++|.|..|+|||||+..+........ =+.++++-+.+.. .+.+++.++...-.... .+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 345789999999999999998876322111 1356677666554 34555555554211110 0111111
Q ss_pred -HHHHHHHHHh---cCCceEEEEecC
Q 000962 265 -LLETRLLEFL---TGQRFLLVLDDV 286 (1208)
Q Consensus 265 -~l~~~l~~~L---~~kr~LlVlDdv 286 (1208)
.....+.+++ +++++|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1223345555 679999999999
No 437
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.25 E-value=0.11 Score=48.69 Aligned_cols=24 Identities=42% Similarity=0.459 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..+|.+.|.-|+||||+++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999984
No 438
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.24 E-value=0.11 Score=56.95 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=35.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
.+++.+.|.|||||||+|.+.+- ........+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988655 33333344777777766666666543
No 439
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.22 E-value=0.1 Score=63.03 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=54.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.++.++.+...+... +.+.++|.+|+||||+|+.+++. -...+++..+|...+ ..+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 46889999888888777643 26889999999999999999873 233446778887663 335667777777
Q ss_pred HHcc
Q 000962 251 EFHS 254 (1208)
Q Consensus 251 ~~~~ 254 (1208)
...+
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 6554
No 440
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.18 E-value=0.92 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.+.-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 441
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.16 E-value=0.22 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..+|+|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 442
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.16 E-value=0.32 Score=55.63 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=48.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHHcccCCC-----CCCc--HH-----
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEFHSKMEQ-----STSS--IS----- 264 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~-----~~~~--~~----- 264 (1208)
-..++|+|..|+|||||++.++.... .+.++++-+.+... +.+...+.+..-+.... ..++ ..
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 45889999999999999999987321 23455565655443 33444433332111100 0111 11
Q ss_pred HHHHHHHHHh--cCCceEEEEecC
Q 000962 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 265 ~l~~~l~~~L--~~kr~LlVlDdv 286 (1208)
.....+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1112233444 589999999999
No 443
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.15 E-value=0.07 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+.++|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 444
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.13 E-value=0.24 Score=57.13 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHHHHHHcccCC-------CCCCcH-----
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKGMIEFHSKME-------QSTSSI----- 263 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~-------~~~~~~----- 263 (1208)
+-..++|.|.+|+|||||+..+.+... +.+-+.++++-+.+.. .+.++..++...-.... .+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 345789999999999999988887432 2245777777776554 34455555543211110 001111
Q ss_pred HHHHHHHHHHh---cCCceEEEEecC
Q 000962 264 SLLETRLLEFL---TGQRFLLVLDDV 286 (1208)
Q Consensus 264 ~~l~~~l~~~L---~~kr~LlVlDdv 286 (1208)
......+.+++ +++++|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 11222344554 389999999999
No 445
>PLN02924 thymidylate kinase
Probab=93.07 E-value=0.28 Score=51.17 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhccc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEE 222 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 222 (1208)
.....|+|-|..|+||||+|+.+++..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l 40 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFL 40 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999843
No 446
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.05 E-value=0.44 Score=49.05 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=27.7
Q ss_pred EEEEEEecCCchHHHHHHHHhccccccccc--------ceeEEEEecCC
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHF--------ESRMWVCVTVD 239 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~ 239 (1208)
.++.|+|.+|+||||++..++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999999988743322222 35678877665
No 447
>PRK04328 hypothetical protein; Provisional
Probab=93.04 E-value=0.37 Score=51.73 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=31.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD 239 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 239 (1208)
.-.++.|.|.+|+|||+||.++... .. ..-..++||+....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 4679999999999999999987763 22 22456788887664
No 448
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.04 E-value=0.82 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-.+++|+|..|.|||||.+.+.-.
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 449
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.02 E-value=0.32 Score=58.38 Aligned_cols=132 Identities=12% Similarity=0.059 Sum_probs=69.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
+.++|....+.++++.+..-. .. -.-|.|+|..|+||+++|+.++... .+ .-..-+.|++..-. .+.+...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A---~~-~~pvlI~GE~GtGK~~lA~aiH~~s-~r-~~~pfv~inca~~~--~~~~e~e- 274 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA---ML-DAPLLITGDTGTGKDLLAYACHLRS-PR-GKKPFLALNCASIP--DDVVESE- 274 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh---CC-CCCEEEECCCCccHHHHHHHHHHhC-CC-CCCCeEEeccccCC--HHHHHHH-
Confidence 368898888877776664322 11 2237799999999999999987632 11 11222455555433 2222221
Q ss_pred HHcccCCCCCC-c-HHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEecCC
Q 000962 251 EFHSKMEQSTS-S-ISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRT 316 (1208)
Q Consensus 251 ~~~~~~~~~~~-~-~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 316 (1208)
+.+...... . .......+. ....=.|+||+|+.........+...+..+. ...|||.||..
T Consensus 275 --lFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 275 --LFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred --hcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 111111000 0 000000011 1223457899997766555667777665421 12478887764
No 450
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.00 E-value=0.13 Score=53.56 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=59.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC-------CCcHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-------TSSISLLETRL 270 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~l~~~l 270 (1208)
.+++.|.|..|.||||+.+.+.-.. +..+-.+.+|..-.. -..+.+|...++..+.. ..++.++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 4688999999999999998887621 111111112211000 00011111111111111 12233333333
Q ss_pred HHHhcCCceEEEEecCCCCCc--cC---hHHHHHhhhCCCCCcEEEEecCChhHHhhh
Q 000962 271 LEFLTGQRFLLVLDDVWNEDY--RK---WEPLQQLLKQGHKGSRVLVTSRTARVSQIM 323 (1208)
Q Consensus 271 ~~~L~~kr~LlVlDdvw~~~~--~~---~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 323 (1208)
.. ..++-|+++|..-.... +. ...+...+... .++.+|++|.+.+++...
T Consensus 106 ~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred Hh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 32 35789999999743211 11 11223333322 578899999998887654
No 451
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.99 E-value=0.56 Score=46.66 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.3
Q ss_pred EEEEecCCchHHHHHHHHhc
Q 000962 201 IPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~ 220 (1208)
|.|+|+.|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 452
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.96 E-value=0.14 Score=49.20 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=27.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1208)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999842 234555555666555
No 453
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.95 E-value=0.14 Score=52.06 Aligned_cols=21 Identities=29% Similarity=0.142 Sum_probs=18.9
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999984
No 454
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.92 E-value=0.24 Score=57.51 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=46.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccc-cccceeE-EEEecCCCC-hHHHHHHHHHHcccCCCCCC-----cHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVR-EHFESRM-WVCVTVDYD-LPRILKGMIEFHSKMEQSTS-----SISLLET 268 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~-wv~~~~~~~-~~~~~~~i~~~~~~~~~~~~-----~~~~l~~ 268 (1208)
+-....|+|.+|+|||||++.+++ .+. .+-++.+ .+-|.+... +.++.+.+-..+-....+.. ....+.-
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998 332 2223333 333444332 22222222111111111111 1112222
Q ss_pred HHHHHh--cCCceEEEEecC
Q 000962 269 RLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 269 ~l~~~L--~~kr~LlVlDdv 286 (1208)
.+.+++ .++.+||++|++
T Consensus 493 ~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCc
Confidence 233444 689999999999
No 455
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.91 E-value=0.84 Score=48.12 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.+.-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 456
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.87 E-value=0.22 Score=56.06 Aligned_cols=50 Identities=32% Similarity=0.451 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHcCC--------CCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 171 ANVFGRDDDKERILHMLLSD--------EFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..++|.++.++.+..++... ........+.|.++|+.|+|||++|+.++.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999888777431 100011236789999999999999999987
No 457
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.87 E-value=0.13 Score=54.11 Aligned_cols=65 Identities=32% Similarity=0.372 Sum_probs=44.9
Q ss_pred HHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
.+++..+.... ++..||+|.|.||+|||||.-++-....-+++=-.++=|+-|..++--.++-+=
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 34555554432 567899999999999999998888754444544556667777777766665443
No 458
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.86 E-value=0.39 Score=50.34 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 459
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=92.86 E-value=0.2 Score=52.46 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHhc-ccCChHHHHHHHHHHHHHHhHHHHHHHHH
Q 000962 14 VEKAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEER-QLKVPQLKDWLGKLRNAAYDAEDILETFA 88 (1208)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~~~d~ed~ld~~~ 88 (1208)
+..++..+-.+.......+.-++.+++-++.+++.+|.||+...+. ...-.....++.++-+.||++|.++|...
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 4555666555555555566678999999999999999999997443 44444588999999999999999999763
No 460
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.84 E-value=0.63 Score=53.35 Aligned_cols=123 Identities=16% Similarity=0.183 Sum_probs=62.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC------CCC------cHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ------STS------SIS 264 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------~~~------~~~ 264 (1208)
.-..++|.|..|+|||||++.++.... ....++...-.+...+.+.++..+..-+.... ... ...
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 345889999999999999999987432 12223333223335566665555443221110 011 111
Q ss_pred HHHHHHHHHh--cCCceEEEEecCCCCCccChHHHHHhhhCC-CCCcEEEEecCChhHHhhh
Q 000962 265 LLETRLLEFL--TGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGSRVLVTSRTARVSQIM 323 (1208)
Q Consensus 265 ~l~~~l~~~L--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~ 323 (1208)
.....+.+++ ++++.|||+||+-.- .....++...+... ..|--..+.|....+++..
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~-a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF-ADARRSVDIAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH-HHHHHHHHHHhcCCCCCCeeeeeeccchhHHHHh
Confidence 1222233333 589999999999221 01222333332111 1244455555555555544
No 461
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.83 E-value=0.76 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.557 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-.+++|+|..|.|||||++.++--
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 462
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.82 E-value=0.087 Score=50.18 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988765
No 463
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.82 E-value=0.19 Score=47.63 Aligned_cols=101 Identities=18% Similarity=0.358 Sum_probs=43.6
Q ss_pred ccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccccc-ccccCCcccEEeecCCCccccch-hhcc
Q 000962 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SICN 635 (1208)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~ 635 (1208)
+..+++|+.+.+. +.+..+....|..+..|+.+.+.++ +..++. .|.++..|+++.+.. .+..++. .|..
T Consensus 8 F~~~~~l~~i~~~------~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 8 FYNCSNLESITFP------NTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp TTT-TT--EEEET------ST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred HhCCCCCCEEEEC------CCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 5556666666554 1233344455666666777766653 554443 355665667776654 4444443 4555
Q ss_pred CCcccEEecCCCccccccch-hcccccccceeecc
Q 000962 636 LYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELE 669 (1208)
Q Consensus 636 L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~ 669 (1208)
+++|+.+++..+ +..++. .+.+. +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 666666666543 222322 33444 55555544
No 464
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.80 E-value=0.078 Score=51.10 Aligned_cols=20 Identities=55% Similarity=0.914 Sum_probs=18.6
Q ss_pred EEEEEecCCchHHHHHHHHh
Q 000962 200 VIPIIGMPGLGKTTLAQLLF 219 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~ 219 (1208)
.|+|.|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 465
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.80 E-value=0.39 Score=54.96 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=46.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-------CCCcHHH-----
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-------STSSISL----- 265 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~----- 265 (1208)
-..++|.|..|+|||||++.+.... + ....++.....+...+.++..+.+..-..... +......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~--~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT--D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 4589999999999999999888632 2 22222322222333344444444332211110 0111111
Q ss_pred HHHHHHHHh--cCCceEEEEecC
Q 000962 266 LETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 266 l~~~l~~~L--~~kr~LlVlDdv 286 (1208)
....+.+++ +++++|+++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112234444 588999999999
No 466
>PRK08149 ATP synthase SpaL; Validated
Probab=92.76 E-value=0.39 Score=54.89 Aligned_cols=85 Identities=19% Similarity=0.340 Sum_probs=47.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC-CChHHHHHHHHHHcccCC-------CCCCcH-----H
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-YDLPRILKGMIEFHSKME-------QSTSSI-----S 264 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~-------~~~~~~-----~ 264 (1208)
-..++|+|..|+|||||+..++... .-+.++...+... ..+.++..+......... .+.... .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 4588999999999999999998632 1233333444333 344555555544321110 001111 1
Q ss_pred HHHHHHHHHh--cCCceEEEEecC
Q 000962 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 265 ~l~~~l~~~L--~~kr~LlVlDdv 286 (1208)
.....+.+++ ++|++|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1122233333 589999999999
No 467
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.76 E-value=0.67 Score=47.56 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46999999999999999999985
No 468
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.74 E-value=0.27 Score=56.37 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHHcccCC-------CCCCcH-----
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEFHSKME-------QSTSSI----- 263 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~-------~~~~~~----- 263 (1208)
+-.-++|.|.+|+|||+|+..+..... +.+-+.++|+-+.+..+ +.++.+++...-.... .+....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 345789999999999999999887422 22346778888876653 4445555443211110 001111
Q ss_pred HHHHHHHHHHh---cCCceEEEEecC
Q 000962 264 SLLETRLLEFL---TGQRFLLVLDDV 286 (1208)
Q Consensus 264 ~~l~~~l~~~L---~~kr~LlVlDdv 286 (1208)
......+.+++ +++++|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 11223344555 468999999999
No 469
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.72 E-value=0.44 Score=52.55 Aligned_cols=83 Identities=13% Similarity=0.244 Sum_probs=46.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC-CCChHHHHHHHHHHcccCC-------CCCCcH------
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV-DYDLPRILKGMIEFHSKME-------QSTSSI------ 263 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~-------~~~~~~------ 263 (1208)
...++|+|..|.|||||.+.+.... . -+..+..-+.. ...+.+........-.... .+....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~--~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGT--T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 4578999999999999999998732 2 12333344432 3344444444443221110 001111
Q ss_pred ---HHHHHHHHHHhcCCceEEEEecC
Q 000962 264 ---SLLETRLLEFLTGQRFLLVLDDV 286 (1208)
Q Consensus 264 ---~~l~~~l~~~L~~kr~LlVlDdv 286 (1208)
-.+.+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccc
Confidence 112333333 589999999999
No 470
>PRK05922 type III secretion system ATPase; Validated
Probab=92.71 E-value=0.3 Score=55.89 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=46.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC-CChHHHHHHHHHHcccCCCC----CCc---HH-----
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-YDLPRILKGMIEFHSKMEQS----TSS---IS----- 264 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~----~~~---~~----- 264 (1208)
-..++|+|..|+|||||.+.+.... ..+..+.+-+... ..+.+.+.+........... ..+ ..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998632 1233344334333 23334444433322211100 111 11
Q ss_pred HHHHHHHHHh--cCCceEEEEecC
Q 000962 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 265 ~l~~~l~~~L--~~kr~LlVlDdv 286 (1208)
.....+.+++ +++++|+++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122233444 589999999999
No 471
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.68 E-value=0.07 Score=53.80 Aligned_cols=21 Identities=48% Similarity=0.664 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|+|.|.+|+||||+|+.++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 472
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.63 E-value=0.076 Score=29.80 Aligned_cols=14 Identities=50% Similarity=0.686 Sum_probs=4.6
Q ss_pred ccEEeecCCCcccc
Q 000962 616 LRYLDLSRTEIKVL 629 (1208)
Q Consensus 616 Lr~L~L~~~~i~~l 629 (1208)
|+.|+|++|+++.+
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444333
No 473
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.62 E-value=1.1 Score=47.89 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=35.6
Q ss_pred HHHHhcCCceEEEEecCCCC-CccChHHHHHhhhCCCCCcEEEEecCChhHHhhhCCCCcEeC
Q 000962 270 LLEFLTGQRFLLVLDDVWNE-DYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLL 331 (1208)
Q Consensus 270 l~~~L~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 331 (1208)
|...|..++-+++||+--.. +....+.+...+.....|..||++|.+...... ++..+.+
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 44556677889999987421 222334455555433236678888888766643 4444444
No 474
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.61 E-value=0.16 Score=52.57 Aligned_cols=21 Identities=33% Similarity=0.205 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHh
Q 000962 199 FVIPIIGMPGLGKTTLAQLLF 219 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~ 219 (1208)
+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 475
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.59 E-value=0.38 Score=54.22 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=57.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhccccc----ccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERV----REHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE 272 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~ 272 (1208)
..+=+.|||..|.|||.|.-.+|+...+ +-||.. =+.++.+.+.+. . ...+.+..+. +
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~----------Fm~~vh~~l~~~-~---~~~~~l~~va----~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHE----------FMLDVHSRLHQL-R---GQDDPLPQVA----D 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccH----------HHHHHHHHHHHH-h---CCCccHHHHH----H
Confidence 4677899999999999999999985433 233321 022222222222 2 2233344443 3
Q ss_pred HhcCCceEEEEecCCCCCccChHHHHHhhhC-CCCCcEEEEecCChhHH
Q 000962 273 FLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ-GHKGSRVLVTSRTARVS 320 (1208)
Q Consensus 273 ~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~ 320 (1208)
.+.++..||.||.+.-.+..+---+...|.. ...|. |||+|-|....
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P~ 170 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPPE 170 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCChH
Confidence 3456777999998854443332222223322 23555 66666665443
No 476
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.58 E-value=35 Score=42.54 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-..|+|+|..|.||||||+.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999876
No 477
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.52 E-value=0.33 Score=51.65 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=46.8
Q ss_pred cEEEEEEecCCchHHHHH-HHHhccccccccccee-EEEEecCCC-ChHHHHHHHHHHcccCC-------CCCCcH----
Q 000962 198 AFVIPIIGMPGLGKTTLA-QLLFNEERVREHFESR-MWVCVTVDY-DLPRILKGMIEFHSKME-------QSTSSI---- 263 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~~~~~~-------~~~~~~---- 263 (1208)
-.-++|.|..|+|||+|| ..+.+. . .-+.+ +++-+.+.. .+.++.+++.+.-.... .+....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 457899999999999996 556542 1 22344 556565553 34455555543211110 001011
Q ss_pred -----HHHHHHHHHHhcCCceEEEEecC
Q 000962 264 -----SLLETRLLEFLTGQRFLLVLDDV 286 (1208)
Q Consensus 264 -----~~l~~~l~~~L~~kr~LlVlDdv 286 (1208)
-.+.+.++. +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 122333333 589999999999
No 478
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.51 E-value=0.13 Score=52.40 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=28.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEE
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVC 235 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 235 (1208)
.++|.|+|+.|+|||||++.+.. .....|..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46899999999999999999997 5556675444443
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.50 E-value=0.13 Score=50.95 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999873
No 480
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.50 E-value=1.4 Score=46.15 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-.+++|+|..|.|||||++.++-.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 481
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.46 E-value=0.16 Score=53.29 Aligned_cols=120 Identities=10% Similarity=0.089 Sum_probs=57.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCC---cHHHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTS---SISLLETRLLEF 273 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~l~~~l~~~ 273 (1208)
+.+++.|+|..|.||||+.+.+.-.. + .+..-.+|.+... .-.....++..++....... ....-..++...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~--la~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-L--MAQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H--HHHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 35799999999999999998876421 1 1111123322210 01112222222222111111 111111122222
Q ss_pred h--cCCceEEEEecCCCC-Cc-----cChHHHHHhhhCCCCCcEEEEecCChhHHhhh
Q 000962 274 L--TGQRFLLVLDDVWNE-DY-----RKWEPLQQLLKQGHKGSRVLVTSRTARVSQIM 323 (1208)
Q Consensus 274 L--~~kr~LlVlDdvw~~-~~-----~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~ 323 (1208)
+ ..++-|++||..-.- +. ..|. +...+.. ..|+.+|+||-..++...+
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~ 159 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALA 159 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHh
Confidence 3 356889999998321 01 1122 1123322 3467899999987776544
No 482
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.43 E-value=1.9 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-.+++|+|..|.|||||++.++--
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 458999999999999999999873
No 483
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.43 E-value=0.077 Score=54.89 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 484
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.41 E-value=1.4 Score=49.10 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHhcc
Q 000962 201 IPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+.+.|+.|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999874
No 485
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.38 E-value=0.12 Score=64.61 Aligned_cols=173 Identities=16% Similarity=0.098 Sum_probs=80.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC-------CCcHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-------TSSISLLETRL 270 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~l~~~l 270 (1208)
.+++.|+|+.+.||||+.+.+.-.. -......+|.+..... -.++..|...++..... ......+...+
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~---~maq~G~~vpa~~~~~-i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAA---LMAKSGLPIPANEPSE-IPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHH---HHHHhCCCcccCCCcc-ccccceEEEecCCccchhhchhHHHHHHHHHHHHH
Confidence 5789999999999999998886421 0111222333321100 01111111111111100 11112222222
Q ss_pred HHHhcCCceEEEEecCCCC-CccChHHHH----HhhhCCCCCcEEEEecCChhHHhhhCCCCcEeCCCCC-hhHHHHHHH
Q 000962 271 LEFLTGQRFLLVLDDVWNE-DYRKWEPLQ----QLLKQGHKGSRVLVTSRTARVSQIMGIRSPYLLEYLP-EDQCWSIFK 344 (1208)
Q Consensus 271 ~~~L~~kr~LlVlDdvw~~-~~~~~~~l~----~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~-~~~~~~lf~ 344 (1208)
. .+ ..+-|+++|..-.. ++.+-..+. ..+. ..|+.+|+||...+++........+.-..+. +++... |.
T Consensus 403 ~-~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~-~~ 477 (782)
T PRK00409 403 E-KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLR-PT 477 (782)
T ss_pred H-hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCc-EE
Confidence 2 22 47789999998532 212222332 2232 3478999999998887654332222111111 111111 11
Q ss_pred HHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhcc
Q 000962 345 KIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRK 389 (1208)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~ 389 (1208)
.. +..+.+ -.--|-+|++++ |+|-.+.--|.-+..
T Consensus 478 Yk-l~~G~~--------g~S~a~~iA~~~-Glp~~ii~~A~~~~~ 512 (782)
T PRK00409 478 YR-LLIGIP--------GKSNAFEIAKRL-GLPENIIEEAKKLIG 512 (782)
T ss_pred EE-EeeCCC--------CCcHHHHHHHHh-CcCHHHHHHHHHHHh
Confidence 11 111111 123466777777 788888877776644
No 486
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.37 E-value=0.098 Score=52.87 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 487
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.36 E-value=0.19 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.070 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 488
>PRK13947 shikimate kinase; Provisional
Probab=92.35 E-value=0.09 Score=52.94 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 489
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=92.33 E-value=0.29 Score=50.55 Aligned_cols=103 Identities=21% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC---CCcHHHHHHHHH
Q 000962 195 EDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS---TSSISLLETRLL 271 (1208)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~l~~~l~ 271 (1208)
.....++.|.|.+|.||||++..+... .. ....+.|+...-.....-..++... ...... ......+...+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~--~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEE--FG--GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHH--T---TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhh--cc--CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 356789999999999999999998762 21 2444555433211111111222221 111100 222344555666
Q ss_pred HHhcCCceEEEEecCCCCCccChHHHHHhhhC
Q 000962 272 EFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQ 303 (1208)
Q Consensus 272 ~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~ 303 (1208)
+..-.+++=+|+|..-.. ......+...+..
T Consensus 87 ~~a~~~~~nii~E~tl~~-~~~~~~~~~~~k~ 117 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSN-PSKLRKLIREAKA 117 (199)
T ss_dssp HHHHHCT--EEEE--TTS-SHHHHHHHHHHHC
T ss_pred HHHHHcCCCEEEecCCCC-hhHHHHHHHHHHc
Confidence 666677888888988432 2333435556654
No 490
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.31 E-value=0.082 Score=53.95 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 491
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.30 E-value=0.45 Score=54.70 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=47.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCC--cHH-----
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STS--SIS----- 264 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~--~~~----- 264 (1208)
+-..++|.|..|+|||||++.++...... ..+++..-.+...+.++.+.+...-..... ..+ ...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999998632211 233333333334444444444432111100 011 111
Q ss_pred HHHHHHHHHh--cCCceEEEEecC
Q 000962 265 LLETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 265 ~l~~~l~~~L--~~kr~LlVlDdv 286 (1208)
.....+.+++ +++++|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1112233333 589999999999
No 492
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.29 E-value=0.18 Score=46.27 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHHcCCCC-CCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-DEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..++|-.-..+.+.+.+..--. ....+.-|++.+|..|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4567776666665555432210 12456789999999999999998888774
No 493
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.29 E-value=0.21 Score=52.88 Aligned_cols=50 Identities=28% Similarity=0.403 Sum_probs=32.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
.-.++.|.|.+|+|||++|.++.... .+..=..++||+..+. ...+.+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~--~~~l~~~~ 67 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP--PEELIENM 67 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS---HHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC--HHHHHHHH
Confidence 45699999999999999999877532 2221245678877554 34444443
No 494
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.27 E-value=0.87 Score=48.12 Aligned_cols=48 Identities=29% Similarity=0.414 Sum_probs=33.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
...++.|.|.+|+|||++|.+++... .+. =..++|++.... ..++.+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~-~~~-g~~~~y~s~e~~--~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQG-LKN-GEKAMYISLEER--EERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhC-CCeEEEEECCCC--HHHHHHH
Confidence 46799999999999999999887631 222 245678877653 4444433
No 495
>PRK15453 phosphoribulokinase; Provisional
Probab=92.23 E-value=0.59 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999985
No 496
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.22 E-value=0.15 Score=55.30 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=35.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD 239 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 239 (1208)
...+++.|+|.+|+|||++|.++.. +.......++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4568999999999999999999998 55555888999998765
No 497
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.20 E-value=1 Score=47.51 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999987
No 498
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.17 E-value=0.29 Score=52.65 Aligned_cols=55 Identities=29% Similarity=0.399 Sum_probs=40.5
Q ss_pred CCccccchhhHHH---HHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccccc
Q 000962 170 TANVFGRDDDKER---ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF 228 (1208)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 228 (1208)
.+.+||..+.++. |+++..+.. -.-+.|.|+|++|.|||+||..+++..--.-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk----~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGK----MAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCc----ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 4678998776654 567776654 346789999999999999999999843333344
No 499
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.16 E-value=0.43 Score=49.23 Aligned_cols=23 Identities=48% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..|+|.|..|+||||+|+.+++.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 500
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.15 E-value=0.11 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.+++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998873
Done!