Query 000962
Match_columns 1208
No_of_seqs 771 out of 5757
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 03:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2E-48 6.8E-53 469.5 25.1 315 174-519 131-471 (549)
2 3rgz_A Protein brassinosteroid 100.0 7.4E-42 2.5E-46 432.5 24.1 585 538-1200 50-740 (768)
3 3rgz_A Protein brassinosteroid 100.0 2.4E-40 8.1E-45 418.8 18.5 424 557-1027 95-549 (768)
4 1vt4_I APAF-1 related killer D 100.0 4.8E-39 1.6E-43 385.9 16.7 285 173-513 130-437 (1221)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-37 5.2E-42 390.5 27.9 524 536-1124 23-594 (680)
6 3sfz_A APAF-1, apoptotic pepti 100.0 4.2E-37 1.4E-41 415.6 22.4 314 169-519 122-452 (1249)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-35 1.7E-39 362.4 29.5 497 562-1126 32-557 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-35 8E-40 365.4 24.5 510 536-1107 30-561 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-34 2.3E-38 357.3 34.4 540 542-1155 8-594 (680)
10 3t6q_A CD180 antigen; protein- 100.0 5.6E-34 1.9E-38 353.0 29.6 500 562-1126 33-559 (606)
11 3t6q_A CD180 antigen; protein- 100.0 8.3E-34 2.8E-38 351.5 26.5 507 536-1104 31-560 (606)
12 1z6t_A APAF-1, apoptotic prote 100.0 7.6E-34 2.6E-38 349.2 24.5 308 170-516 123-449 (591)
13 3j0a_A TOLL-like receptor 5; m 100.0 6E-32 2E-36 345.6 37.2 303 536-875 22-347 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 5.6E-32 1.9E-36 332.9 20.8 320 536-875 26-356 (570)
15 4ecn_A Leucine-rich repeat pro 100.0 2.2E-31 7.5E-36 332.1 23.5 102 1017-1126 729-839 (876)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-31 1.8E-35 322.4 25.3 435 591-1126 26-485 (549)
17 4eco_A Uncharacterized protein 100.0 1.4E-31 4.7E-36 330.3 19.6 108 994-1126 489-599 (636)
18 2z63_A TOLL-like receptor 4, v 100.0 1.6E-30 5.6E-35 319.8 27.5 475 562-1126 28-530 (570)
19 3j0a_A TOLL-like receptor 5; m 100.0 1E-29 3.4E-34 325.0 34.4 484 537-1107 47-563 (844)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-30 7.6E-35 314.1 27.0 427 591-1126 21-480 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 6.1E-31 2.1E-35 328.2 19.0 87 770-859 568-658 (876)
22 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-30 9.2E-35 316.0 22.9 435 584-1102 43-508 (549)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-29 6.5E-34 315.2 29.8 541 562-1202 52-621 (635)
24 4eco_A Uncharacterized protein 100.0 1.6E-30 5.5E-35 320.7 16.6 101 971-1076 489-598 (636)
25 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-29 4.1E-34 307.6 21.4 450 541-1103 3-480 (520)
26 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-28 8.6E-33 305.0 27.4 508 536-1103 50-579 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.8E-28 3.4E-32 293.1 30.6 428 591-1126 52-509 (562)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-27 6.9E-32 290.4 25.8 444 540-1104 33-510 (562)
29 1jl5_A Outer protein YOPM; leu 100.0 2.7E-27 9.3E-32 278.4 23.7 348 589-1079 9-371 (454)
30 1o6v_A Internalin A; bacterial 99.9 8.3E-26 2.8E-30 268.9 26.5 100 590-697 45-144 (466)
31 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-26 1.4E-30 268.5 22.1 224 587-873 38-261 (457)
32 1jl5_A Outer protein YOPM; leu 99.9 3E-25 1E-29 261.0 26.0 175 613-856 10-184 (454)
33 1o6v_A Internalin A; bacterial 99.9 1.8E-25 6.2E-30 266.0 24.0 121 560-695 44-164 (466)
34 3v47_A TOLL-like receptor 5B a 99.9 4.9E-25 1.7E-29 262.5 23.2 130 970-1104 275-408 (455)
35 3v47_A TOLL-like receptor 5B a 99.9 2.9E-24 1E-28 255.7 23.4 129 950-1081 278-411 (455)
36 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-24 7.1E-29 254.0 19.7 344 558-1061 38-393 (457)
37 4fmz_A Internalin; leucine ric 99.9 1.4E-23 4.7E-28 239.9 22.1 82 588-673 41-122 (347)
38 3o6n_A APL1; leucine-rich repe 99.9 1.4E-22 4.9E-27 235.3 21.2 104 589-695 43-149 (390)
39 3o6n_A APL1; leucine-rich repe 99.9 1.2E-22 4.1E-27 235.9 18.7 214 560-833 43-259 (390)
40 4fmz_A Internalin; leucine ric 99.9 1.1E-22 3.8E-27 232.4 16.8 125 558-696 40-164 (347)
41 2id5_A Lingo-1, leucine rich r 99.9 8.8E-22 3E-26 235.5 25.2 98 594-696 14-113 (477)
42 3oja_B Anopheles plasmodium-re 99.9 3.9E-22 1.3E-26 244.7 21.3 103 590-695 50-155 (597)
43 3oja_B Anopheles plasmodium-re 99.9 1.8E-22 6E-27 247.7 18.1 215 560-834 49-266 (597)
44 2id5_A Lingo-1, leucine rich r 99.9 8.6E-21 2.9E-25 226.9 20.7 307 542-875 15-329 (477)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-19 4.1E-24 205.4 23.2 87 592-683 34-121 (332)
46 1xku_A Decorin; proteoglycan, 99.8 1.4E-19 4.7E-24 204.8 22.8 97 591-694 31-128 (330)
47 4fcg_A Uncharacterized protein 99.8 1.3E-20 4.3E-25 212.0 13.3 225 589-874 79-306 (328)
48 1ogq_A PGIP-2, polygalacturona 99.8 8.7E-21 3E-25 212.1 10.7 231 585-860 70-306 (313)
49 3ogk_B Coronatine-insensitive 99.8 2E-21 6.7E-26 239.9 -1.1 232 582-853 103-350 (592)
50 1ogq_A PGIP-2, polygalacturona 99.8 2E-20 7E-25 209.1 6.4 244 591-879 50-304 (313)
51 1xku_A Decorin; proteoglycan, 99.8 4.7E-19 1.6E-23 200.4 15.7 281 540-875 33-328 (330)
52 2ft3_A Biglycan; proteoglycan, 99.8 8.4E-19 2.9E-23 198.4 17.6 282 539-876 34-330 (332)
53 3ogk_B Coronatine-insensitive 99.8 5.1E-21 1.7E-25 236.2 -1.8 212 583-833 65-304 (592)
54 3g06_A SSPH2 (leucine-rich rep 99.8 3.7E-18 1.2E-22 206.4 22.7 93 588-695 37-129 (622)
55 4fcg_A Uncharacterized protein 99.8 1.7E-18 5.9E-23 194.5 15.9 60 774-835 80-140 (328)
56 1z7x_W Ribonuclease inhibitor; 99.7 2.7E-20 9.3E-25 221.9 -6.8 258 538-833 3-295 (461)
57 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-16 4.1E-21 193.1 24.6 116 969-1102 180-295 (622)
58 1z7x_W Ribonuclease inhibitor; 99.7 3.3E-21 1.1E-25 229.8 -16.0 108 562-674 3-126 (461)
59 2p1m_B Transport inhibitor res 99.7 2.3E-19 7.8E-24 221.5 -1.7 240 557-832 61-324 (594)
60 2z66_A Variable lymphocyte rec 99.7 1E-17 3.5E-22 187.2 10.6 126 562-695 28-158 (306)
61 2z80_A TOLL-like receptor 2, v 99.7 1.1E-17 3.7E-22 191.0 10.7 253 562-837 52-316 (353)
62 2z80_A TOLL-like receptor 2, v 99.7 1.7E-17 5.7E-22 189.5 12.0 242 591-877 52-312 (353)
63 3o53_A Protein LRIM1, AGAP0063 99.7 3.3E-18 1.1E-22 191.8 5.1 89 577-671 20-109 (317)
64 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-17 3.7E-22 184.8 7.5 63 771-835 173-238 (285)
65 2z66_A Variable lymphocyte rec 99.7 4.5E-17 1.5E-21 182.0 11.8 203 591-836 28-237 (306)
66 3zyi_A Leucine-rich repeat-con 99.7 1.7E-16 5.8E-21 187.7 17.2 219 591-855 75-300 (452)
67 3zyj_A Leucine-rich repeat-con 99.7 2.2E-16 7.7E-21 185.9 17.7 219 591-856 64-290 (440)
68 3zyj_A Leucine-rich repeat-con 99.7 2.1E-16 7.1E-21 186.2 15.8 242 540-835 45-292 (440)
69 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-17 4.5E-22 186.9 4.4 241 556-854 28-271 (317)
70 3zyi_A Leucine-rich repeat-con 99.7 2.6E-16 8.7E-21 186.2 15.7 240 541-834 57-302 (452)
71 2p1m_B Transport inhibitor res 99.6 1.9E-19 6.4E-24 222.3 -15.3 114 583-696 58-193 (594)
72 1w5s_A Origin recognition comp 99.6 4.2E-15 1.4E-19 173.9 21.2 316 170-507 21-386 (412)
73 1wwl_A Monocyte differentiatio 99.6 1.2E-16 4.3E-21 178.5 7.6 83 590-672 94-184 (312)
74 1ozn_A Reticulon 4 receptor; N 99.6 1.5E-15 5.2E-20 167.5 14.7 85 771-857 149-237 (285)
75 1wwl_A Monocyte differentiatio 99.6 9.1E-17 3.1E-21 179.6 3.4 249 558-857 39-308 (312)
76 3oja_A Leucine-rich immune mol 99.6 4.8E-16 1.6E-20 184.5 8.6 59 773-833 32-91 (487)
77 3qfl_A MLA10; coiled-coil, (CC 99.6 1.3E-15 4.5E-20 138.2 9.4 81 13-93 2-84 (115)
78 2qen_A Walker-type ATPase; unk 99.6 2.3E-14 7.9E-19 163.6 21.6 293 170-513 11-349 (350)
79 3oja_A Leucine-rich immune mol 99.6 5.1E-16 1.7E-20 184.3 7.5 216 589-858 32-250 (487)
80 2z62_A TOLL-like receptor 4, v 99.6 3.2E-15 1.1E-19 164.0 13.1 204 592-835 29-237 (276)
81 1h6u_A Internalin H; cell adhe 99.6 2.7E-15 9.3E-20 166.9 12.6 191 589-834 39-229 (308)
82 3rfs_A Internalin B, repeat mo 99.6 3.4E-15 1.2E-19 163.1 12.5 207 588-870 38-247 (272)
83 4glp_A Monocyte differentiatio 99.6 5.1E-15 1.8E-19 165.2 12.2 208 589-834 89-306 (310)
84 2o6q_A Variable lymphocyte rec 99.6 2.7E-14 9.1E-19 155.8 16.9 195 592-833 17-216 (270)
85 2xwt_C Thyrotropin receptor; s 99.6 2.2E-14 7.7E-19 153.4 15.9 175 947-1127 55-239 (239)
86 1p9a_G Platelet glycoprotein I 99.6 1.8E-14 6.2E-19 158.4 15.5 103 587-696 6-109 (290)
87 2z62_A TOLL-like receptor 4, v 99.6 4.1E-15 1.4E-19 163.1 9.5 208 562-814 28-238 (276)
88 1p9a_G Platelet glycoprotein I 99.6 8.7E-14 3E-18 153.0 19.2 194 924-1126 7-207 (290)
89 2fna_A Conserved hypothetical 99.5 3.6E-13 1.2E-17 154.1 24.2 289 170-511 12-355 (357)
90 2xwt_C Thyrotropin receptor; s 99.5 1.7E-14 5.8E-19 154.3 11.7 94 592-690 32-130 (239)
91 2ast_B S-phase kinase-associat 99.5 1.1E-15 3.8E-20 173.4 1.9 255 562-867 47-315 (336)
92 3rfs_A Internalin B, repeat mo 99.5 6.7E-14 2.3E-18 152.8 15.5 173 924-1102 38-216 (272)
93 4ay9_X Follicle-stimulating ho 99.5 1.1E-13 3.7E-18 157.2 16.3 99 594-697 12-114 (350)
94 4ay9_X Follicle-stimulating ho 99.5 6.7E-13 2.3E-17 150.7 22.3 235 778-1100 12-255 (350)
95 2o6q_A Variable lymphocyte rec 99.5 7.5E-13 2.6E-17 144.3 20.7 191 929-1126 18-217 (270)
96 2ast_B S-phase kinase-associat 99.5 4.3E-15 1.5E-19 168.5 2.0 248 540-839 49-310 (336)
97 2ca6_A RAN GTPase-activating p 99.5 2.4E-15 8.2E-20 173.9 -0.4 133 558-696 28-196 (386)
98 2ca6_A RAN GTPase-activating p 99.5 2.4E-15 8.4E-20 173.9 -0.7 242 583-858 24-316 (386)
99 1h6u_A Internalin H; cell adhe 99.5 1.5E-13 5.3E-18 152.7 13.3 191 922-1126 36-229 (308)
100 1h6t_A Internalin B; cell adhe 99.5 1.3E-13 4.4E-18 151.8 10.9 101 588-696 43-143 (291)
101 3m19_A Variable lymphocyte rec 99.4 9.4E-13 3.2E-17 141.8 16.6 173 591-834 14-191 (251)
102 3goz_A Leucine-rich repeat-con 99.4 1.7E-14 5.9E-19 164.8 2.3 248 577-857 8-296 (362)
103 2qby_B CDC6 homolog 3, cell di 99.4 2.7E-12 9.3E-17 148.3 20.6 287 171-495 20-340 (384)
104 3m19_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 137.9 18.6 169 950-1126 17-191 (251)
105 4glp_A Monocyte differentiatio 99.4 6.1E-13 2.1E-17 148.4 13.6 192 927-1125 91-305 (310)
106 1m9s_A Internalin B; cell inva 99.4 4.4E-13 1.5E-17 161.9 12.1 101 588-696 40-140 (605)
107 2v1u_A Cell division control p 99.4 8.2E-12 2.8E-16 144.6 20.8 292 171-495 19-352 (387)
108 4ezg_A Putative uncharacterize 99.4 3.6E-13 1.2E-17 138.9 7.7 104 588-695 41-144 (197)
109 3cvr_A Invasion plasmid antige 99.4 1.2E-12 4E-17 156.1 12.4 180 591-838 59-246 (571)
110 1fnn_A CDC6P, cell division co 99.4 3.9E-11 1.3E-15 138.8 25.0 301 171-495 17-352 (389)
111 1h6t_A Internalin B; cell adhe 99.4 1.6E-12 5.4E-17 143.1 12.2 164 950-1126 49-212 (291)
112 3cvr_A Invasion plasmid antige 99.4 2.4E-12 8.2E-17 153.5 14.0 173 928-1126 60-242 (571)
113 3goz_A Leucine-rich repeat-con 99.3 2.9E-13 9.9E-18 154.6 3.5 252 545-835 5-297 (362)
114 2v9t_B SLIT homolog 2 protein 99.3 1.4E-12 4.8E-17 136.8 8.0 152 542-704 15-169 (220)
115 1xeu_A Internalin C; cellular 99.3 8.3E-13 2.8E-17 142.8 6.4 167 589-833 17-183 (263)
116 1m9s_A Internalin B; cell inva 99.3 3.9E-12 1.3E-16 153.6 12.6 165 924-1101 40-207 (605)
117 2o6s_A Variable lymphocyte rec 99.3 1.4E-12 4.9E-17 135.9 7.7 129 538-671 28-158 (208)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 2.5E-12 8.6E-17 134.9 8.6 154 541-704 14-170 (220)
119 2qby_A CDC6 homolog 1, cell di 99.3 2.6E-11 9E-16 140.2 18.0 296 170-494 19-348 (386)
120 4ezg_A Putative uncharacterize 99.3 8.9E-12 3.1E-16 128.4 12.2 145 950-1125 47-192 (197)
121 2o6s_A Variable lymphocyte rec 99.3 2.3E-11 7.7E-16 126.8 15.4 160 969-1149 27-190 (208)
122 3e6j_A Variable lymphocyte rec 99.3 4.5E-11 1.5E-15 126.3 15.9 126 993-1125 40-170 (229)
123 3e6j_A Variable lymphocyte rec 99.3 8.6E-12 2.9E-16 131.8 9.5 145 543-699 24-171 (229)
124 2v9t_B SLIT homolog 2 protein 99.2 1.1E-11 3.8E-16 129.9 8.4 134 536-674 30-165 (220)
125 4b8c_D Glucose-repressible alc 99.2 6.5E-12 2.2E-16 156.0 7.4 155 537-697 172-326 (727)
126 2v70_A SLIT-2, SLIT homolog 2 99.2 1.3E-11 4.4E-16 129.4 8.4 134 536-674 30-166 (220)
127 2ell_A Acidic leucine-rich nuc 99.2 1.3E-11 4.3E-16 123.7 6.9 108 585-697 43-157 (168)
128 2xot_A Amphoterin-induced prot 99.2 3.7E-11 1.3E-15 136.9 11.3 171 594-833 21-200 (361)
129 2je0_A Acidic leucine-rich nuc 99.2 8.7E-12 3E-16 122.0 4.3 105 586-694 37-147 (149)
130 1njg_A DNA polymerase III subu 99.2 8.1E-11 2.8E-15 126.6 12.1 197 171-387 23-231 (250)
131 1xeu_A Internalin C; cellular 99.2 5.8E-11 2E-15 128.3 10.9 143 538-698 41-183 (263)
132 1a9n_A U2A', U2A'; complex (nu 99.2 2.4E-11 8.3E-16 122.5 7.1 129 558-698 15-151 (176)
133 1dce_A Protein (RAB geranylger 99.2 6.2E-13 2.1E-17 159.7 -6.4 199 611-872 346-566 (567)
134 2ell_A Acidic leucine-rich nuc 99.1 4.9E-11 1.7E-15 119.4 7.9 135 536-682 22-165 (168)
135 2xot_A Amphoterin-induced prot 99.1 5.9E-11 2E-15 135.2 8.3 146 541-697 21-173 (361)
136 4b8c_D Glucose-repressible alc 99.1 6E-12 2.1E-16 156.3 -0.4 113 555-674 217-329 (727)
137 1w8a_A SLIT protein; signaling 99.1 5.3E-11 1.8E-15 121.8 6.3 87 587-673 50-138 (192)
138 2chg_A Replication factor C sm 99.1 1.6E-09 5.4E-14 114.4 17.9 180 171-385 17-205 (226)
139 1w8a_A SLIT protein; signaling 99.1 7.9E-11 2.7E-15 120.5 7.3 109 592-702 30-141 (192)
140 2je0_A Acidic leucine-rich nuc 99.1 6.2E-11 2.1E-15 115.9 6.2 126 536-670 15-149 (149)
141 2wfh_A SLIT homolog 2 protein 99.1 2.6E-10 8.9E-15 116.5 8.8 105 591-698 31-137 (193)
142 1dce_A Protein (RAB geranylger 99.0 2.2E-10 7.7E-15 137.5 8.6 86 587-673 459-545 (567)
143 1a9n_A U2A', U2A'; complex (nu 99.0 2.5E-10 8.4E-15 115.1 7.0 128 536-673 17-152 (176)
144 2wfh_A SLIT homolog 2 protein 99.0 1.1E-09 3.9E-14 111.7 10.3 100 594-697 13-112 (193)
145 1hqc_A RUVB; extended AAA-ATPa 99.0 5.9E-09 2E-13 116.9 16.9 268 171-493 12-324 (324)
146 2o6r_A Variable lymphocyte rec 99.0 7.9E-10 2.7E-14 111.5 8.6 102 592-696 29-133 (177)
147 1sxj_B Activator 1 37 kDa subu 98.9 9E-09 3.1E-13 115.4 15.0 186 171-385 21-211 (323)
148 1ds9_A Outer arm dynein; leuci 98.9 2.1E-11 7E-16 125.8 -7.2 108 586-697 43-150 (198)
149 3g39_A Variable lymphocyte rec 98.9 2.6E-09 9E-14 106.5 7.7 100 593-698 11-113 (170)
150 2r9u_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 105.9 8.5 97 594-696 15-114 (174)
151 3sb4_A Hypothetical leucine ri 98.8 7.3E-09 2.5E-13 116.2 11.4 267 561-857 24-309 (329)
152 1ds9_A Outer arm dynein; leuci 98.8 4.1E-11 1.4E-15 123.5 -6.9 101 609-715 43-143 (198)
153 3sb4_A Hypothetical leucine ri 98.8 8.7E-09 3E-13 115.6 10.2 80 774-858 48-137 (329)
154 2o6r_A Variable lymphocyte rec 98.8 3.7E-08 1.3E-12 99.1 13.5 123 973-1102 10-135 (177)
155 2r9u_A Variable lymphocyte rec 98.8 6E-09 2.1E-13 104.2 6.3 83 591-674 33-118 (174)
156 3g39_A Variable lymphocyte rec 98.7 7.1E-09 2.4E-13 103.4 6.2 84 591-674 30-115 (170)
157 1iqp_A RFCS; clamp loader, ext 98.7 9.4E-08 3.2E-12 107.3 14.3 184 171-387 25-215 (327)
158 3te6_A Regulatory protein SIR3 98.7 3.1E-07 1.1E-11 99.6 17.1 211 171-387 20-283 (318)
159 2ifg_A High affinity nerve gro 98.6 5.5E-08 1.9E-12 110.1 8.2 76 597-673 14-92 (347)
160 1jr3_A DNA polymerase III subu 98.6 6.9E-07 2.4E-11 102.2 16.6 195 171-384 16-221 (373)
161 4fdw_A Leucine rich hypothetic 98.6 1.2E-06 4E-11 100.3 18.1 120 560-694 111-233 (401)
162 4fdw_A Leucine rich hypothetic 98.5 8.4E-07 2.9E-11 101.4 15.0 230 550-834 124-357 (401)
163 2chq_A Replication factor C sm 98.5 8.3E-07 2.8E-11 99.1 13.2 183 171-385 17-205 (319)
164 3bos_A Putative DNA replicatio 98.4 3.9E-07 1.3E-11 97.1 9.3 175 171-385 28-218 (242)
165 2ifg_A High affinity nerve gro 98.4 2.1E-07 7.2E-12 105.3 7.2 94 578-674 20-116 (347)
166 1jbk_A CLPB protein; beta barr 98.4 8.8E-07 3E-11 90.5 9.9 150 171-342 22-193 (195)
167 2z4s_A Chromosomal replication 98.3 7.2E-06 2.5E-10 94.8 17.3 181 198-402 130-331 (440)
168 4fs7_A Uncharacterized protein 98.3 2E-05 6.7E-10 90.6 19.9 106 555-670 64-171 (394)
169 3pfi_A Holliday junction ATP-d 98.3 3.6E-05 1.2E-09 86.3 21.5 178 171-384 29-227 (338)
170 1sxj_D Activator 1 41 kDa subu 98.3 6.9E-06 2.4E-10 93.0 15.0 193 171-384 37-235 (353)
171 3pvs_A Replication-associated 98.2 2E-05 6.9E-10 90.7 17.8 183 171-384 26-215 (447)
172 3un9_A NLR family member X1; l 98.2 1.3E-07 4.4E-12 107.1 -0.6 106 591-696 101-220 (372)
173 3h4m_A Proteasome-activating n 98.2 1E-05 3.6E-10 88.2 14.2 183 171-381 17-228 (285)
174 4fs7_A Uncharacterized protein 98.2 3.6E-05 1.2E-09 88.4 19.2 141 970-1122 230-374 (394)
175 3un9_A NLR family member X1; l 98.2 1.4E-07 4.6E-12 106.9 -1.5 154 539-697 73-249 (372)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.8E-05 9.6E-10 83.6 16.7 187 171-383 6-221 (262)
177 1sxj_E Activator 1 40 kDa subu 98.2 8E-06 2.7E-10 92.4 12.6 196 171-385 14-238 (354)
178 1sxj_A Activator 1 95 kDa subu 98.2 1.1E-05 3.9E-10 95.5 14.1 198 171-385 39-254 (516)
179 3uk6_A RUVB-like 2; hexameric 98.1 6.1E-05 2.1E-09 85.6 17.8 193 171-381 44-300 (368)
180 3syl_A Protein CBBX; photosynt 98.1 3.8E-05 1.3E-09 84.9 15.4 160 172-349 32-219 (309)
181 3e4g_A ATP synthase subunit S, 98.1 7.8E-07 2.7E-11 86.7 1.2 88 1016-1106 61-154 (176)
182 1a5t_A Delta prime, HOLB; zinc 98.0 0.0001 3.5E-09 82.0 17.6 171 177-384 8-205 (334)
183 3rw6_A Nuclear RNA export fact 98.0 3.4E-06 1.2E-10 89.1 5.2 90 578-668 157-258 (267)
184 2p65_A Hypothetical protein PF 98.0 9E-06 3.1E-10 82.3 8.2 45 171-221 22-66 (187)
185 1d2n_A N-ethylmaleimide-sensit 98.0 9.5E-05 3.2E-09 79.8 16.5 195 172-401 34-259 (272)
186 3u61_B DNA polymerase accessor 98.0 3.1E-05 1.1E-09 86.2 12.6 174 171-380 26-212 (324)
187 1l8q_A Chromosomal replication 98.0 7.8E-05 2.7E-09 82.9 15.6 168 180-378 23-202 (324)
188 3n70_A Transport activator; si 97.9 1.4E-05 4.9E-10 76.7 7.6 114 172-316 2-115 (145)
189 3e4g_A ATP synthase subunit S, 97.9 3.4E-06 1.2E-10 82.2 1.6 86 971-1057 62-154 (176)
190 3d8b_A Fidgetin-like protein 1 97.9 0.0002 6.8E-09 80.4 16.4 188 171-385 84-296 (357)
191 3eie_A Vacuolar protein sortin 97.9 0.00024 8.1E-09 78.7 16.7 185 171-384 18-228 (322)
192 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.0006 2E-08 75.2 19.8 187 171-385 12-224 (322)
193 1sxj_C Activator 1 40 kDa subu 97.8 0.00016 5.6E-09 80.8 15.5 176 171-381 25-209 (340)
194 1io0_A Tropomodulin; LRR prote 97.8 4.8E-06 1.6E-10 83.9 1.9 86 583-668 28-128 (185)
195 2qp9_X Vacuolar protein sortin 97.8 0.00041 1.4E-08 77.7 17.7 185 171-384 51-261 (355)
196 3ec2_A DNA replication protein 97.8 3.2E-05 1.1E-09 77.6 7.6 121 176-316 19-142 (180)
197 2w58_A DNAI, primosome compone 97.8 3.3E-05 1.1E-09 79.2 7.8 119 178-316 36-158 (202)
198 1io0_A Tropomodulin; LRR prote 97.8 3E-05 1E-09 78.0 6.7 118 557-674 31-164 (185)
199 3b9p_A CG5977-PA, isoform A; A 97.8 0.00068 2.3E-08 74.2 18.2 184 171-383 21-232 (297)
200 3cf0_A Transitional endoplasmi 97.7 0.00034 1.2E-08 76.5 15.2 181 171-379 15-223 (301)
201 2gno_A DNA polymerase III, gam 97.7 0.00024 8.1E-09 77.3 12.7 148 176-347 2-152 (305)
202 3vfd_A Spastin; ATPase, microt 97.6 0.00085 2.9E-08 76.4 16.7 186 171-383 115-325 (389)
203 1ofh_A ATP-dependent HSL prote 97.6 0.00089 3E-08 73.8 16.5 153 171-345 15-213 (310)
204 2ra8_A Uncharacterized protein 97.6 3E-05 1E-09 86.8 4.0 58 610-669 168-227 (362)
205 3co5_A Putative two-component 97.6 4.7E-05 1.6E-09 72.8 4.7 110 172-316 5-115 (143)
206 1in4_A RUVB, holliday junction 97.6 0.0042 1.4E-07 68.9 21.3 177 171-383 25-222 (334)
207 4gt6_A Cell surface protein; l 97.6 0.00081 2.8E-08 77.0 16.0 106 556-670 57-169 (394)
208 3hu3_A Transitional endoplasmi 97.6 0.00022 7.4E-09 83.0 11.0 185 171-383 204-414 (489)
209 4fcw_A Chaperone protein CLPB; 97.6 0.00057 2E-08 75.4 13.9 136 172-316 18-169 (311)
210 4b4t_J 26S protease regulatory 97.5 0.0014 4.8E-08 72.7 16.6 179 171-377 148-354 (405)
211 2zan_A Vacuolar protein sortin 97.5 0.0012 4E-08 76.4 16.5 188 171-384 134-345 (444)
212 4gt6_A Cell surface protein; l 97.5 0.0027 9.2E-08 72.6 19.4 104 988-1101 260-367 (394)
213 3rw6_A Nuclear RNA export fact 97.5 2E-05 6.9E-10 83.2 1.1 96 596-695 148-259 (267)
214 3pxg_A Negative regulator of g 97.5 0.0005 1.7E-08 80.1 13.0 146 171-348 180-339 (468)
215 1qvr_A CLPB protein; coiled co 97.5 0.00034 1.1E-08 88.4 12.2 154 171-347 170-345 (854)
216 2bjv_A PSP operon transcriptio 97.4 0.00028 9.5E-09 75.8 9.2 133 171-316 6-150 (265)
217 2kjq_A DNAA-related protein; s 97.4 0.0001 3.5E-09 70.7 4.8 87 198-316 36-124 (149)
218 4b4t_L 26S protease subunit RP 97.3 0.0022 7.4E-08 72.6 15.2 179 171-377 181-387 (437)
219 1lv7_A FTSH; alpha/beta domain 97.3 0.0023 7.7E-08 68.2 14.8 158 171-348 12-196 (257)
220 2ra8_A Uncharacterized protein 97.3 0.00038 1.3E-08 77.8 8.8 62 612-673 250-319 (362)
221 1ojl_A Transcriptional regulat 97.3 0.0004 1.4E-08 75.8 8.4 159 171-344 2-187 (304)
222 4b4t_H 26S protease regulatory 97.3 0.0023 7.7E-08 72.1 14.1 179 171-377 209-415 (467)
223 4b4t_K 26S protease regulatory 97.2 0.0026 8.9E-08 71.8 14.2 158 171-348 172-358 (428)
224 4h09_A Hypothetical leucine ri 97.2 0.019 6.5E-07 65.1 21.4 120 970-1098 217-340 (379)
225 3pxi_A Negative regulator of g 97.2 0.0022 7.5E-08 80.0 14.0 147 171-347 180-338 (758)
226 3pxi_A Negative regulator of g 97.1 0.0012 4.1E-08 82.4 11.5 156 171-347 491-675 (758)
227 2c9o_A RUVB-like 1; hexameric 97.1 0.0028 9.5E-08 73.7 13.6 93 280-383 298-409 (456)
228 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0019 6.5E-08 80.8 12.9 158 171-347 186-362 (758)
229 2ce7_A Cell division protein F 97.1 0.0029 9.8E-08 72.8 12.8 179 171-377 16-221 (476)
230 4b4t_M 26S protease regulatory 97.0 0.0023 7.7E-08 72.3 11.2 159 171-349 181-367 (434)
231 4b4t_I 26S protease regulatory 97.0 0.007 2.4E-07 67.4 14.0 159 171-349 182-368 (437)
232 4h09_A Hypothetical leucine ri 97.0 0.013 4.5E-07 66.4 17.0 79 770-852 258-340 (379)
233 2r62_A Cell division protease 96.9 0.00034 1.2E-08 75.3 3.2 158 171-348 11-197 (268)
234 2r44_A Uncharacterized protein 96.9 0.002 6.9E-08 71.6 9.2 150 172-349 28-200 (331)
235 3t15_A Ribulose bisphosphate c 96.9 0.0064 2.2E-07 65.9 12.9 26 196-221 34-59 (293)
236 2qgz_A Helicase loader, putati 96.9 0.00061 2.1E-08 74.4 4.5 57 176-236 133-189 (308)
237 3m6a_A ATP-dependent protease 96.7 0.0037 1.3E-07 74.1 9.8 162 171-347 81-266 (543)
238 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0012 4E-08 70.7 4.6 68 198-287 123-192 (331)
239 3cf2_A TER ATPase, transitiona 96.5 0.0075 2.5E-07 73.6 11.2 179 171-377 204-407 (806)
240 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0065 2.2E-07 76.0 10.3 134 171-316 458-607 (758)
241 1qvr_A CLPB protein; coiled co 96.4 0.009 3.1E-07 75.4 11.0 137 171-316 558-710 (854)
242 2x8a_A Nuclear valosin-contain 96.3 0.052 1.8E-06 57.9 15.0 156 171-348 10-192 (274)
243 2cvh_A DNA repair and recombin 96.3 0.012 4.2E-07 60.7 9.9 84 198-287 20-115 (220)
244 1g5t_A COB(I)alamin adenosyltr 96.3 0.0086 2.9E-07 59.1 8.0 113 199-317 29-163 (196)
245 1um8_A ATP-dependent CLP prote 96.3 0.022 7.5E-07 64.4 12.7 50 171-220 21-94 (376)
246 2b8t_A Thymidine kinase; deoxy 96.2 0.0043 1.5E-07 63.4 5.4 113 198-318 12-127 (223)
247 1ixz_A ATP-dependent metallopr 96.2 0.022 7.4E-07 60.4 11.1 155 171-347 16-199 (254)
248 1iy2_A ATP-dependent metallopr 96.1 0.022 7.4E-07 61.3 10.9 157 171-348 40-224 (278)
249 1ypw_A Transitional endoplasmi 96.0 0.011 3.8E-07 73.5 9.1 158 171-348 204-386 (806)
250 2dhr_A FTSH; AAA+ protein, hex 96.0 0.065 2.2E-06 62.0 14.9 154 171-348 31-215 (499)
251 1g8p_A Magnesium-chelatase 38 96.0 0.051 1.7E-06 60.7 13.7 45 171-221 24-68 (350)
252 3hr8_A Protein RECA; alpha and 95.9 0.017 5.8E-07 63.6 9.1 83 197-286 60-148 (356)
253 1jr3_D DNA polymerase III, del 95.8 0.11 3.8E-06 57.7 15.2 157 198-383 18-184 (343)
254 3io5_A Recombination and repai 95.6 0.033 1.1E-06 59.2 9.4 80 200-286 30-120 (333)
255 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.031 1.1E-06 58.2 9.2 115 198-317 23-168 (235)
256 3rfe_A Platelet glycoprotein I 95.5 0.016 5.6E-07 53.6 5.9 55 594-650 11-68 (130)
257 1xp8_A RECA protein, recombina 95.4 0.036 1.2E-06 61.4 9.3 82 198-286 74-161 (366)
258 2zr9_A Protein RECA, recombina 95.4 0.038 1.3E-06 61.1 9.2 83 197-286 60-148 (349)
259 1ye8_A Protein THEP1, hypothet 95.3 0.088 3E-06 51.8 10.7 22 200-221 2-23 (178)
260 1v5w_A DMC1, meiotic recombina 95.2 0.07 2.4E-06 59.0 10.9 57 196-253 120-180 (343)
261 1n0w_A DNA repair protein RAD5 95.0 0.049 1.7E-06 57.1 8.6 89 198-287 24-129 (243)
262 3lw7_A Adenylate kinase relate 95.0 0.18 6.1E-06 49.5 12.3 20 199-218 2-21 (179)
263 2px0_A Flagellar biosynthesis 95.0 0.056 1.9E-06 58.2 9.0 87 197-286 104-191 (296)
264 2z43_A DNA repair and recombin 95.0 0.05 1.7E-06 59.8 8.6 55 198-253 107-165 (324)
265 1u94_A RECA protein, recombina 94.9 0.05 1.7E-06 60.2 8.3 82 198-286 63-150 (356)
266 2i1q_A DNA repair and recombin 94.8 0.061 2.1E-06 59.1 8.7 89 197-286 97-213 (322)
267 1rz3_A Hypothetical protein rb 94.7 0.03 1E-06 56.7 5.6 42 176-220 3-44 (201)
268 1vma_A Cell division protein F 94.5 0.13 4.3E-06 55.5 10.2 107 178-287 82-196 (306)
269 2cbz_A Multidrug resistance-as 94.5 0.24 8.3E-06 51.3 12.0 23 198-220 31-53 (237)
270 2pze_A Cystic fibrosis transme 94.4 0.38 1.3E-05 49.4 13.1 23 198-220 34-56 (229)
271 3tqc_A Pantothenate kinase; bi 94.3 0.13 4.6E-06 55.5 9.9 45 174-220 70-114 (321)
272 1cr0_A DNA primase/helicase; R 94.3 0.11 3.8E-06 56.3 9.3 37 198-236 35-72 (296)
273 3dm5_A SRP54, signal recogniti 94.1 0.32 1.1E-05 54.9 12.6 24 197-220 99-122 (443)
274 1pgv_A TMD-1, tropomodulin TMD 94.1 0.086 2.9E-06 52.3 7.0 63 584-646 63-135 (197)
275 2orw_A Thymidine kinase; TMTK, 94.0 0.012 4.2E-07 58.4 0.7 108 199-317 4-113 (184)
276 3ice_A Transcription terminati 94.0 0.075 2.6E-06 58.0 6.8 94 182-286 163-270 (422)
277 2eyu_A Twitching motility prot 93.9 0.019 6.7E-07 60.5 2.2 112 198-320 25-136 (261)
278 3c8u_A Fructokinase; YP_612366 93.8 0.047 1.6E-06 55.6 4.8 38 179-220 7-44 (208)
279 3nbx_X ATPase RAVA; AAA+ ATPas 93.7 0.053 1.8E-06 62.8 5.5 42 172-221 23-64 (500)
280 1pgv_A TMD-1, tropomodulin TMD 93.6 0.079 2.7E-06 52.5 5.8 92 580-671 30-136 (197)
281 2p5t_B PEZT; postsegregational 93.6 0.11 3.6E-06 54.8 7.2 42 178-220 13-54 (253)
282 3bh0_A DNAB-like replicative h 93.6 0.35 1.2E-05 52.6 11.5 52 197-252 67-118 (315)
283 3kl4_A SRP54, signal recogniti 93.5 0.22 7.4E-06 56.3 10.0 25 197-221 96-120 (433)
284 2xxa_A Signal recognition part 93.5 0.36 1.2E-05 54.8 11.7 43 179-221 78-123 (433)
285 4eun_A Thermoresistant glucoki 93.5 0.2 6.8E-06 50.5 8.8 23 198-220 29-51 (200)
286 1qhx_A CPT, protein (chloramph 93.4 0.034 1.2E-06 55.0 2.8 22 199-220 4-25 (178)
287 3jvv_A Twitching mobility prot 93.4 0.063 2.1E-06 59.3 5.2 113 198-321 123-235 (356)
288 4akg_A Glutathione S-transfera 93.4 1.3 4.5E-05 61.5 18.9 139 199-347 1268-1431(2695)
289 1zp6_A Hypothetical protein AT 93.3 0.046 1.6E-06 54.7 3.8 23 198-220 9-31 (191)
290 2ffh_A Protein (FFH); SRP54, s 93.3 0.18 6.2E-06 56.8 8.8 24 198-221 98-121 (425)
291 3cf2_A TER ATPase, transitiona 93.3 0.56 1.9E-05 57.3 13.7 158 170-347 476-661 (806)
292 4a74_A DNA repair and recombin 93.3 0.22 7.5E-06 51.4 9.1 45 197-241 24-72 (231)
293 1pzn_A RAD51, DNA repair and r 93.3 0.21 7.1E-06 55.3 9.2 47 197-243 130-180 (349)
294 4a1f_A DNAB helicase, replicat 93.3 0.21 7E-06 54.5 8.9 52 198-253 46-97 (338)
295 1odf_A YGR205W, hypothetical 3 93.2 0.054 1.9E-06 58.0 4.2 25 196-220 29-53 (290)
296 2ga8_A Hypothetical 39.9 kDa p 93.1 0.076 2.6E-06 57.7 5.2 45 174-220 2-46 (359)
297 3vaa_A Shikimate kinase, SK; s 93.1 0.042 1.4E-06 55.5 3.0 23 198-220 25-47 (199)
298 3lda_A DNA repair protein RAD5 93.1 0.24 8.2E-06 55.5 9.4 57 197-254 177-237 (400)
299 1sky_E F1-ATPase, F1-ATP synth 93.1 0.11 3.9E-06 58.7 6.7 50 199-249 152-202 (473)
300 1j8m_F SRP54, signal recogniti 93.0 0.33 1.1E-05 52.1 10.0 88 198-287 98-190 (297)
301 2ck3_D ATP synthase subunit be 93.0 0.2 6.8E-06 56.5 8.4 65 182-252 142-207 (482)
302 3kb2_A SPBC2 prophage-derived 93.0 0.045 1.5E-06 53.7 3.0 22 199-220 2-23 (173)
303 3l0o_A Transcription terminati 93.0 0.3 1E-05 53.3 9.3 36 181-221 163-198 (427)
304 1ly1_A Polynucleotide kinase; 92.9 0.05 1.7E-06 53.8 3.2 22 199-220 3-24 (181)
305 3hws_A ATP-dependent CLP prote 92.9 0.072 2.4E-06 59.7 4.8 49 172-220 16-73 (363)
306 2pjz_A Hypothetical protein ST 92.8 0.77 2.6E-05 48.2 12.3 22 199-220 31-52 (263)
307 2ewv_A Twitching motility prot 92.7 0.16 5.4E-06 56.7 7.2 110 198-319 136-246 (372)
308 1u0j_A DNA replication protein 92.7 0.7 2.4E-05 48.0 11.5 37 180-220 90-126 (267)
309 3e70_C DPA, signal recognition 92.7 0.36 1.2E-05 52.5 9.8 24 197-220 128-151 (328)
310 3uie_A Adenylyl-sulfate kinase 92.6 0.067 2.3E-06 54.0 3.7 23 198-220 25-47 (200)
311 1zu4_A FTSY; GTPase, signal re 92.5 0.29 1E-05 53.1 8.8 24 197-220 104-127 (320)
312 3trf_A Shikimate kinase, SK; a 92.5 0.055 1.9E-06 53.9 2.8 23 198-220 5-27 (185)
313 1knq_A Gluconate kinase; ALFA/ 92.5 0.081 2.8E-06 52.0 4.0 24 197-220 7-30 (175)
314 1fx0_B ATP synthase beta chain 92.5 0.27 9.2E-06 55.7 8.5 64 182-251 154-218 (498)
315 1kgd_A CASK, peripheral plasma 92.4 0.064 2.2E-06 53.1 3.2 23 198-220 5-27 (180)
316 2rhm_A Putative kinase; P-loop 92.4 0.072 2.5E-06 53.4 3.7 23 198-220 5-27 (193)
317 1kag_A SKI, shikimate kinase I 92.4 0.051 1.7E-06 53.4 2.4 22 199-220 5-26 (173)
318 1ls1_A Signal recognition part 92.3 0.29 1E-05 52.5 8.5 24 198-221 98-121 (295)
319 1gvn_B Zeta; postsegregational 92.3 0.13 4.3E-06 55.3 5.5 41 179-220 15-55 (287)
320 2j37_W Signal recognition part 92.3 0.71 2.4E-05 53.3 12.1 41 180-220 80-123 (504)
321 1uj2_A Uridine-cytidine kinase 92.2 0.071 2.4E-06 56.2 3.4 25 196-220 20-44 (252)
322 2dr3_A UPF0273 protein PH0284; 92.2 0.32 1.1E-05 50.8 8.6 39 198-238 23-61 (247)
323 1nks_A Adenylate kinase; therm 92.2 0.072 2.5E-06 53.4 3.4 22 199-220 2-23 (194)
324 3t61_A Gluconokinase; PSI-biol 92.1 0.06 2.1E-06 54.5 2.6 23 198-220 18-40 (202)
325 3fwy_A Light-independent proto 92.1 0.13 4.6E-06 55.6 5.4 40 197-238 47-86 (314)
326 2yhs_A FTSY, cell division pro 92.0 0.48 1.7E-05 54.0 10.0 43 196-241 291-333 (503)
327 2qt1_A Nicotinamide riboside k 92.0 0.1 3.5E-06 53.0 4.2 24 197-220 20-43 (207)
328 1uf9_A TT1252 protein; P-loop, 92.0 0.089 3E-06 53.2 3.7 25 196-220 6-30 (203)
329 3rfe_A Platelet glycoprotein I 91.9 0.16 5.4E-06 46.9 5.0 54 617-673 11-67 (130)
330 3hjn_A DTMP kinase, thymidylat 91.9 0.2 6.9E-06 50.1 6.2 21 200-220 2-22 (197)
331 3llm_A ATP-dependent RNA helic 91.9 0.67 2.3E-05 47.9 10.5 21 199-219 77-97 (235)
332 3asz_A Uridine kinase; cytidin 91.9 0.09 3.1E-06 53.6 3.6 24 197-220 5-28 (211)
333 1y63_A LMAJ004144AAA protein; 91.9 0.086 3E-06 52.4 3.4 23 198-220 10-32 (184)
334 2hf9_A Probable hydrogenase ni 91.8 0.13 4.3E-06 53.2 4.8 39 177-221 23-61 (226)
335 2bdt_A BH3686; alpha-beta prot 91.8 0.084 2.9E-06 52.7 3.3 22 199-220 3-24 (189)
336 3tau_A Guanylate kinase, GMP k 91.8 0.08 2.7E-06 53.8 3.1 23 198-220 8-30 (208)
337 4gp7_A Metallophosphoesterase; 91.8 0.085 2.9E-06 51.6 3.2 23 198-220 9-31 (171)
338 3iij_A Coilin-interacting nucl 91.8 0.065 2.2E-06 53.0 2.4 23 198-220 11-33 (180)
339 1kht_A Adenylate kinase; phosp 91.8 0.077 2.6E-06 53.1 3.0 22 199-220 4-25 (192)
340 1zuh_A Shikimate kinase; alpha 91.8 0.075 2.6E-06 51.9 2.8 23 198-220 7-29 (168)
341 1xjc_A MOBB protein homolog; s 91.7 0.11 3.6E-06 50.3 3.7 24 197-220 3-26 (169)
342 2ze6_A Isopentenyl transferase 91.7 0.082 2.8E-06 55.6 3.2 22 199-220 2-23 (253)
343 1ukz_A Uridylate kinase; trans 91.7 0.1 3.5E-06 52.8 3.8 24 197-220 14-37 (203)
344 2c95_A Adenylate kinase 1; tra 91.7 0.088 3E-06 52.9 3.2 23 198-220 9-31 (196)
345 2qor_A Guanylate kinase; phosp 91.6 0.072 2.5E-06 54.0 2.6 23 198-220 12-34 (204)
346 3tr0_A Guanylate kinase, GMP k 91.6 0.087 3E-06 53.4 3.2 23 198-220 7-29 (205)
347 2yvu_A Probable adenylyl-sulfa 91.6 0.11 3.6E-06 51.8 3.7 25 197-221 12-36 (186)
348 1tev_A UMP-CMP kinase; ploop, 91.5 0.093 3.2E-06 52.7 3.3 23 198-220 3-25 (196)
349 2if2_A Dephospho-COA kinase; a 91.5 0.089 3.1E-06 53.3 3.1 21 200-220 3-23 (204)
350 1ex7_A Guanylate kinase; subst 91.5 0.066 2.2E-06 52.9 2.0 21 200-220 3-23 (186)
351 2jaq_A Deoxyguanosine kinase; 91.5 0.087 3E-06 53.4 3.0 21 200-220 2-22 (205)
352 1via_A Shikimate kinase; struc 91.4 0.077 2.6E-06 52.2 2.4 21 200-220 6-26 (175)
353 1q57_A DNA primase/helicase; d 91.4 0.54 1.8E-05 55.1 10.1 53 197-252 241-293 (503)
354 3a4m_A L-seryl-tRNA(SEC) kinas 91.4 0.1 3.4E-06 55.2 3.4 23 198-220 4-26 (260)
355 2j41_A Guanylate kinase; GMP, 91.3 0.097 3.3E-06 53.1 3.1 23 198-220 6-28 (207)
356 1qf9_A UMP/CMP kinase, protein 91.2 0.14 4.6E-06 51.3 4.1 23 198-220 6-28 (194)
357 1jjv_A Dephospho-COA kinase; P 91.2 0.11 3.6E-06 52.8 3.3 22 199-220 3-24 (206)
358 2wsm_A Hydrogenase expression/ 91.1 0.14 4.7E-06 52.6 4.2 41 175-221 13-53 (221)
359 3a00_A Guanylate kinase, GMP k 91.1 0.079 2.7E-06 52.8 2.2 22 199-220 2-23 (186)
360 3cm0_A Adenylate kinase; ATP-b 91.1 0.11 3.9E-06 51.5 3.4 23 198-220 4-26 (186)
361 2iyv_A Shikimate kinase, SK; t 91.1 0.076 2.6E-06 52.8 2.0 21 200-220 4-24 (184)
362 3umf_A Adenylate kinase; rossm 91.0 0.14 4.7E-06 52.0 3.9 25 196-220 27-51 (217)
363 3ney_A 55 kDa erythrocyte memb 91.0 0.12 4E-06 51.5 3.3 24 197-220 18-41 (197)
364 2cdn_A Adenylate kinase; phosp 91.0 0.12 4E-06 52.2 3.4 23 198-220 20-42 (201)
365 2plr_A DTMP kinase, probable t 91.0 0.12 4E-06 52.7 3.4 24 198-221 4-27 (213)
366 3upu_A ATP-dependent DNA helic 91.0 0.28 9.4E-06 56.8 6.9 38 177-221 31-68 (459)
367 1cke_A CK, MSSA, protein (cyti 90.9 0.11 3.6E-06 53.8 3.0 22 199-220 6-27 (227)
368 3aez_A Pantothenate kinase; tr 90.8 0.13 4.4E-06 55.8 3.6 25 196-220 88-112 (312)
369 2bwj_A Adenylate kinase 5; pho 90.8 0.11 3.9E-06 52.2 3.1 23 198-220 12-34 (199)
370 1e6c_A Shikimate kinase; phosp 90.8 0.089 3.1E-06 51.6 2.2 22 199-220 3-24 (173)
371 1rj9_A FTSY, signal recognitio 90.7 0.12 4.1E-06 55.7 3.3 24 197-220 101-124 (304)
372 2pt5_A Shikimate kinase, SK; a 90.7 0.12 4E-06 50.5 2.9 21 200-220 2-22 (168)
373 2bbw_A Adenylate kinase 4, AK4 90.7 0.11 3.9E-06 54.3 3.1 23 198-220 27-49 (246)
374 1lvg_A Guanylate kinase, GMP k 90.7 0.095 3.2E-06 52.8 2.3 23 198-220 4-26 (198)
375 4edh_A DTMP kinase, thymidylat 90.7 0.48 1.6E-05 48.0 7.5 24 198-221 6-29 (213)
376 3vr4_D V-type sodium ATPase su 90.6 0.24 8.2E-06 55.5 5.6 87 198-286 151-257 (465)
377 2grj_A Dephospho-COA kinase; T 90.6 0.13 4.5E-06 51.2 3.2 24 197-220 11-34 (192)
378 1nn5_A Similar to deoxythymidy 90.5 0.17 5.8E-06 51.7 4.1 23 198-220 9-31 (215)
379 2vli_A Antibiotic resistance p 90.5 0.084 2.9E-06 52.3 1.7 23 198-220 5-27 (183)
380 2jeo_A Uridine-cytidine kinase 90.5 0.15 5E-06 53.4 3.7 23 198-220 25-47 (245)
381 1htw_A HI0065; nucleotide-bind 90.5 0.16 5.4E-06 48.7 3.6 23 198-220 33-55 (158)
382 3tlx_A Adenylate kinase 2; str 90.4 0.18 6.1E-06 52.6 4.2 24 197-220 28-51 (243)
383 2z0h_A DTMP kinase, thymidylat 90.3 0.25 8.4E-06 49.6 5.1 21 200-220 2-22 (197)
384 1aky_A Adenylate kinase; ATP:A 90.3 0.13 4.4E-06 52.8 3.0 23 198-220 4-26 (220)
385 3gqb_B V-type ATP synthase bet 90.3 0.26 9.1E-06 55.1 5.6 89 198-286 147-260 (464)
386 3end_A Light-independent proto 90.2 0.25 8.6E-06 53.7 5.4 44 196-241 39-82 (307)
387 2pez_A Bifunctional 3'-phospho 90.2 0.16 5.3E-06 50.2 3.4 23 198-220 5-27 (179)
388 2pbr_A DTMP kinase, thymidylat 90.2 0.13 4.6E-06 51.4 3.0 21 200-220 2-22 (195)
389 1tue_A Replication protein E1; 90.2 0.18 6.2E-06 49.9 3.7 38 179-221 44-81 (212)
390 1znw_A Guanylate kinase, GMP k 90.2 0.14 4.8E-06 52.0 3.1 23 198-220 20-42 (207)
391 2f6r_A COA synthase, bifunctio 90.2 0.17 5.8E-06 54.1 3.9 24 197-220 74-97 (281)
392 2wwf_A Thymidilate kinase, put 90.1 0.14 4.9E-06 52.1 3.1 23 198-220 10-32 (212)
393 1sq5_A Pantothenate kinase; P- 90.1 0.31 1.1E-05 52.9 5.9 25 196-220 78-102 (308)
394 4e22_A Cytidylate kinase; P-lo 90.1 0.14 4.9E-06 53.7 3.2 23 198-220 27-49 (252)
395 3cmu_A Protein RECA, recombina 90.0 0.43 1.5E-05 63.8 8.2 83 197-286 1426-1514(2050)
396 1zd8_A GTP:AMP phosphotransfer 90.0 0.14 4.8E-06 52.9 3.0 23 198-220 7-29 (227)
397 1z6g_A Guanylate kinase; struc 89.9 0.13 4.4E-06 52.7 2.5 23 198-220 23-45 (218)
398 3mfy_A V-type ATP synthase alp 89.8 0.67 2.3E-05 52.9 8.4 59 182-249 216-275 (588)
399 2r6a_A DNAB helicase, replicat 89.8 0.82 2.8E-05 52.7 9.6 50 198-250 203-252 (454)
400 3zvl_A Bifunctional polynucleo 89.8 0.55 1.9E-05 53.4 7.9 24 197-220 257-280 (416)
401 1g41_A Heat shock protein HSLU 89.7 0.29 9.8E-06 55.4 5.4 50 171-220 15-72 (444)
402 3b9q_A Chloroplast SRP recepto 89.7 0.18 6.1E-06 54.4 3.5 24 197-220 99-122 (302)
403 2pt7_A CAG-ALFA; ATPase, prote 89.6 0.49 1.7E-05 51.7 7.0 106 199-319 172-277 (330)
404 1m7g_A Adenylylsulfate kinase; 89.6 0.19 6.4E-06 51.2 3.5 23 198-220 25-47 (211)
405 2f1r_A Molybdopterin-guanine d 89.5 0.13 4.3E-06 50.2 2.0 22 199-220 3-24 (171)
406 1gtv_A TMK, thymidylate kinase 89.5 0.1 3.5E-06 53.3 1.4 21 200-220 2-22 (214)
407 1vht_A Dephospho-COA kinase; s 89.5 0.19 6.6E-06 51.4 3.6 23 198-220 4-26 (218)
408 2ged_A SR-beta, signal recogni 89.5 0.27 9.2E-06 49.0 4.6 26 196-221 46-71 (193)
409 1s96_A Guanylate kinase, GMP k 89.5 0.17 5.9E-06 51.6 3.1 23 198-220 16-38 (219)
410 3p32_A Probable GTPase RV1496/ 89.5 0.43 1.5E-05 53.0 6.6 37 180-220 65-101 (355)
411 2v54_A DTMP kinase, thymidylat 89.5 0.17 6E-06 51.1 3.2 23 198-220 4-26 (204)
412 3a8t_A Adenylate isopentenyltr 89.4 0.2 6.8E-06 54.1 3.7 23 198-220 40-62 (339)
413 1zak_A Adenylate kinase; ATP:A 89.4 0.15 5.3E-06 52.3 2.7 23 198-220 5-27 (222)
414 2i3b_A HCR-ntpase, human cance 89.4 0.15 5.1E-06 50.6 2.4 22 200-221 3-24 (189)
415 3v9p_A DTMP kinase, thymidylat 89.3 0.3 1E-05 49.9 4.7 24 198-221 25-48 (227)
416 2qe7_A ATP synthase subunit al 89.2 0.57 2E-05 53.1 7.3 96 182-286 151-263 (502)
417 2q6t_A DNAB replication FORK h 89.2 1.1 3.7E-05 51.4 10.0 53 197-252 199-251 (444)
418 3vr4_A V-type sodium ATPase ca 89.2 0.82 2.8E-05 52.5 8.5 58 182-248 221-279 (600)
419 3b85_A Phosphate starvation-in 89.1 0.24 8.3E-06 50.0 3.8 22 199-220 23-44 (208)
420 3fb4_A Adenylate kinase; psych 89.1 0.18 6.2E-06 51.5 3.0 21 200-220 2-22 (216)
421 3d3q_A TRNA delta(2)-isopenten 89.1 0.19 6.6E-06 54.5 3.2 22 199-220 8-29 (340)
422 3oaa_A ATP synthase subunit al 89.0 0.8 2.7E-05 51.8 8.2 94 182-286 151-263 (513)
423 2c61_A A-type ATP synthase non 88.9 0.35 1.2E-05 54.5 5.3 100 182-286 141-258 (469)
424 3nwj_A ATSK2; P loop, shikimat 88.9 0.15 5.2E-06 53.1 2.2 22 199-220 49-70 (250)
425 3k1j_A LON protease, ATP-depen 88.9 0.22 7.6E-06 59.8 4.0 42 171-220 41-82 (604)
426 3dl0_A Adenylate kinase; phosp 88.9 0.19 6.6E-06 51.3 3.0 21 200-220 2-22 (216)
427 3vkg_A Dynein heavy chain, cyt 88.9 2.9 0.0001 58.7 15.1 80 200-290 1306-1387(3245)
428 3be4_A Adenylate kinase; malar 88.8 0.17 5.9E-06 51.7 2.6 22 199-220 6-27 (217)
429 3tif_A Uncharacterized ABC tra 88.7 0.32 1.1E-05 50.2 4.6 23 198-220 31-53 (235)
430 2r9v_A ATP synthase subunit al 88.6 0.62 2.1E-05 52.9 7.0 85 198-286 175-276 (515)
431 2pcj_A ABC transporter, lipopr 88.5 0.22 7.5E-06 51.1 3.1 23 198-220 30-52 (224)
432 3exa_A TRNA delta(2)-isopenten 88.5 0.24 8.2E-06 52.7 3.4 23 198-220 3-25 (322)
433 1np6_A Molybdopterin-guanine d 88.5 0.22 7.6E-06 48.5 3.0 23 198-220 6-28 (174)
434 2onk_A Molybdate/tungstate ABC 88.5 0.21 7.2E-06 51.7 3.0 22 199-220 25-46 (240)
435 2og2_A Putative signal recogni 88.5 0.24 8.2E-06 54.5 3.5 24 197-220 156-179 (359)
436 3ake_A Cytidylate kinase; CMP 88.5 0.21 7.3E-06 50.5 3.0 21 200-220 4-24 (208)
437 3r20_A Cytidylate kinase; stru 88.4 0.22 7.6E-06 51.0 3.0 23 198-220 9-31 (233)
438 1yrb_A ATP(GTP)binding protein 88.3 0.29 9.9E-06 51.8 4.0 26 196-221 12-37 (262)
439 3bgw_A DNAB-like replicative h 88.3 1.8 6.1E-05 49.4 10.8 52 197-252 196-247 (444)
440 3gfo_A Cobalt import ATP-bindi 88.3 0.34 1.2E-05 51.3 4.4 23 198-220 34-56 (275)
441 2zts_A Putative uncharacterize 88.3 0.95 3.2E-05 47.2 8.0 49 198-249 30-78 (251)
442 2ehv_A Hypothetical protein PH 88.2 0.23 7.7E-06 52.2 3.1 23 198-220 30-52 (251)
443 3lnc_A Guanylate kinase, GMP k 88.1 0.17 5.8E-06 52.4 1.9 22 198-219 27-48 (231)
444 1b0u_A Histidine permease; ABC 88.1 0.37 1.3E-05 50.7 4.6 23 198-220 32-54 (262)
445 3crm_A TRNA delta(2)-isopenten 88.1 0.25 8.4E-06 53.3 3.2 23 198-220 5-27 (323)
446 3cmu_A Protein RECA, recombina 88.0 0.73 2.5E-05 61.7 8.2 84 197-287 382-471 (2050)
447 1e4v_A Adenylate kinase; trans 88.0 0.25 8.5E-06 50.4 3.1 21 200-220 2-22 (214)
448 4eaq_A DTMP kinase, thymidylat 88.0 0.38 1.3E-05 49.5 4.6 25 197-221 25-49 (229)
449 3foz_A TRNA delta(2)-isopenten 88.0 0.3 1E-05 51.9 3.7 24 197-220 9-32 (316)
450 1cp2_A CP2, nitrogenase iron p 88.0 0.44 1.5E-05 50.5 5.2 39 199-239 2-40 (269)
451 4hlc_A DTMP kinase, thymidylat 87.9 0.7 2.4E-05 46.4 6.3 29 199-229 3-31 (205)
452 2xb4_A Adenylate kinase; ATP-b 87.8 0.25 8.5E-06 50.8 3.0 21 200-220 2-22 (223)
453 3cmw_A Protein RECA, recombina 87.8 0.67 2.3E-05 61.2 7.6 84 197-287 382-471 (1706)
454 1q3t_A Cytidylate kinase; nucl 87.6 0.27 9.2E-06 51.0 3.2 25 196-220 14-38 (236)
455 3e1s_A Exodeoxyribonuclease V, 87.6 0.56 1.9E-05 55.6 6.2 22 199-220 205-226 (574)
456 3ld9_A DTMP kinase, thymidylat 87.6 0.7 2.4E-05 46.9 6.1 25 197-221 20-44 (223)
457 3lv8_A DTMP kinase, thymidylat 87.6 0.89 3E-05 46.7 6.9 24 198-221 27-50 (236)
458 2ff7_A Alpha-hemolysin translo 87.5 0.41 1.4E-05 49.9 4.4 23 198-220 35-57 (247)
459 3sr0_A Adenylate kinase; phosp 87.5 0.28 9.5E-06 49.4 3.0 21 200-220 2-22 (206)
460 1ak2_A Adenylate kinase isoenz 87.4 0.28 9.6E-06 50.8 3.2 23 198-220 16-38 (233)
461 2fz4_A DNA repair protein RAD2 87.4 2.2 7.4E-05 44.1 10.0 100 201-314 111-226 (237)
462 1fx0_A ATP synthase alpha chai 87.4 0.54 1.9E-05 53.4 5.6 83 198-286 163-264 (507)
463 2r8r_A Sensor protein; KDPD, P 87.4 0.43 1.5E-05 48.2 4.3 107 200-317 8-127 (228)
464 2v3c_C SRP54, signal recogniti 87.4 0.34 1.2E-05 55.0 4.0 43 179-221 77-122 (432)
465 3b5x_A Lipid A export ATP-bind 87.4 2.5 8.4E-05 50.4 11.7 23 198-220 369-391 (582)
466 1oix_A RAS-related protein RAB 87.3 0.33 1.1E-05 48.4 3.5 24 198-221 29-52 (191)
467 1sgw_A Putative ABC transporte 87.2 0.24 8.3E-06 50.2 2.4 22 199-220 36-57 (214)
468 2vp4_A Deoxynucleoside kinase; 87.2 0.32 1.1E-05 50.2 3.4 25 196-220 18-42 (230)
469 1a7j_A Phosphoribulokinase; tr 87.2 0.16 5.6E-06 54.4 1.2 24 197-220 4-27 (290)
470 1ji0_A ABC transporter; ATP bi 87.2 0.28 9.7E-06 50.9 3.0 23 198-220 32-54 (240)
471 1mv5_A LMRA, multidrug resista 87.2 0.33 1.1E-05 50.5 3.6 23 198-220 28-50 (243)
472 2olj_A Amino acid ABC transpor 87.2 0.3 1E-05 51.4 3.1 23 198-220 50-72 (263)
473 3vkw_A Replicase large subunit 87.1 1.2 4E-05 50.1 8.1 26 195-220 158-183 (446)
474 2xau_A PRE-mRNA-splicing facto 87.1 2.6 9.1E-05 51.8 12.0 22 199-220 110-131 (773)
475 2ck3_A ATP synthase subunit al 87.1 0.64 2.2E-05 52.9 5.9 100 182-286 151-271 (510)
476 3dzd_A Transcriptional regulat 87.1 1.3 4.4E-05 49.3 8.5 46 172-221 130-175 (368)
477 4tmk_A Protein (thymidylate ki 87.0 1 3.5E-05 45.5 6.9 23 199-221 4-26 (213)
478 4g1u_C Hemin import ATP-bindin 87.0 0.29 9.9E-06 51.6 3.0 23 198-220 37-59 (266)
479 1g6h_A High-affinity branched- 87.0 0.29 1E-05 51.4 3.0 23 198-220 33-55 (257)
480 2afh_E Nitrogenase iron protei 86.9 0.52 1.8E-05 50.6 5.1 41 198-240 2-42 (289)
481 2wji_A Ferrous iron transport 86.9 0.36 1.2E-05 46.6 3.5 23 199-221 4-26 (165)
482 2d2e_A SUFC protein; ABC-ATPas 86.8 0.31 1.1E-05 50.9 3.1 23 198-220 29-51 (250)
483 2qmh_A HPR kinase/phosphorylas 86.7 0.35 1.2E-05 47.6 3.1 23 198-220 34-56 (205)
484 1vpl_A ABC transporter, ATP-bi 86.7 0.33 1.1E-05 50.9 3.1 23 198-220 41-63 (256)
485 2zej_A Dardarin, leucine-rich 86.7 0.3 1E-05 48.3 2.7 21 200-220 4-24 (184)
486 1ltq_A Polynucleotide kinase; 86.6 0.32 1.1E-05 52.7 3.2 22 199-220 3-24 (301)
487 2zu0_C Probable ATP-dependent 86.6 0.32 1.1E-05 51.3 3.1 23 198-220 46-68 (267)
488 2qi9_C Vitamin B12 import ATP- 86.5 0.33 1.1E-05 50.6 3.0 23 198-220 26-48 (249)
489 2ghi_A Transport protein; mult 86.4 0.34 1.2E-05 50.9 3.1 23 198-220 46-68 (260)
490 2ixe_A Antigen peptide transpo 86.3 0.35 1.2E-05 51.2 3.1 23 198-220 45-67 (271)
491 2nq2_C Hypothetical ABC transp 86.0 0.35 1.2E-05 50.6 2.9 23 198-220 31-53 (253)
492 2ihy_A ABC transporter, ATP-bi 86.0 0.35 1.2E-05 51.3 3.0 23 198-220 47-69 (279)
493 2yz2_A Putative ABC transporte 86.0 0.37 1.3E-05 50.9 3.1 23 198-220 33-55 (266)
494 1tf7_A KAIC; homohexamer, hexa 86.0 0.65 2.2E-05 54.7 5.6 24 198-221 281-304 (525)
495 2v9p_A Replication protein E1; 85.9 0.36 1.2E-05 51.7 3.0 23 198-220 126-148 (305)
496 1xx6_A Thymidine kinase; NESG, 85.9 0.49 1.7E-05 46.8 3.8 110 197-317 7-118 (191)
497 2wjg_A FEOB, ferrous iron tran 85.8 0.55 1.9E-05 46.5 4.2 25 197-221 6-30 (188)
498 2dyk_A GTP-binding protein; GT 85.6 0.44 1.5E-05 45.6 3.3 23 199-221 2-24 (161)
499 1nlf_A Regulatory protein REPA 85.6 0.4 1.4E-05 51.2 3.2 23 198-220 30-52 (279)
500 2ocp_A DGK, deoxyguanosine kin 85.5 0.46 1.6E-05 49.4 3.6 23 198-220 2-24 (241)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2e-48 Score=469.55 Aligned_cols=315 Identities=16% Similarity=0.223 Sum_probs=255.7
Q ss_pred ccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc--ccccccccceeEEEEecCCC--ChHHHHHHH
Q 000962 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN--EERVREHFESRMWVCVTVDY--DLPRILKGM 249 (1208)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i 249 (1208)
|||+.++++|.++|.... ....++|+|+||||+||||||++||+ +.+++.+|+.++||++++.+ +...++++|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997542 24579999999999999999999998 67899999999999999885 789999999
Q ss_pred HHHcccCCC-------CCCcHHHHHHHHHHHhcCC-ceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHh
Q 000962 250 IEFHSKMEQ-------STSSISLLETRLLEFLTGQ-RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1208)
Q Consensus 250 ~~~~~~~~~-------~~~~~~~l~~~l~~~L~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1208)
+.+++.... ...+...+...+++.|++| ||||||||||+.+. + .++. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--~-----~~~~-~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I-----RWAQ-ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H-----HHHH-HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--h-----cccc-cCCCEEEEEcCCHHHHH
Confidence 999876532 1234567889999999996 99999999997532 2 2221 27999999999999998
Q ss_pred hhC-CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCChhHHHHHH
Q 000962 322 IMG-IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKIL 400 (1208)
Q Consensus 322 ~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~l 400 (1208)
.++ ....|+|++|++++||+||.++||... .++.+++++++|+++|+|+||||+++|+.|+.+ .. +|...+
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~------~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l 351 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP------VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQL 351 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHh
Confidence 776 336799999999999999999998643 236778899999999999999999999999765 32 333444
Q ss_pred hhcccccccCCCCCCCCccchhccccCCChhHHHHHH-----------HhccCCCCCccChHHHHHHHHHc--cccccCC
Q 000962 401 SSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFS-----------LCSIFPKSYAFDKAEMVKFWMAE--ALIQSRG 467 (1208)
Q Consensus 401 ~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~w~ae--g~i~~~~ 467 (1208)
....+... ..++.++|.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+....
T Consensus 352 ~~~l~~~~-----~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~ 422 (549)
T 2a5y_B 352 NNKLESRG-----LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNE 422 (549)
T ss_dssp HHHHHHHC-----SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC------
T ss_pred HHHhhccc-----HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCC
Confidence 44333321 357999999999999999999999 999999999999 8999999 9997554
Q ss_pred CCCCccHHHHHHHHHHHHHhccCcccccCCCcceEEEhhhHHHHHHHhcCCC
Q 000962 468 GGRQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVSSPY 519 (1208)
Q Consensus 468 ~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~~~~~~ 519 (1208)
.+.. .+++++ ||++|+++||+++...+...+|+|||+||++|+.++.++
T Consensus 423 ~~~~--~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 423 EEQL--DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp -CCC--THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred CCCC--HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 2323 378888 999999999999876555678999999999999988776
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-42 Score=432.52 Aligned_cols=585 Identities=18% Similarity=0.130 Sum_probs=417.7
Q ss_pred CceeEEEEEcccCCCC---ccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCc-cccc--ccc
Q 000962 538 PETRHVSLLCKHVEKP---ALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT-VLPD--SVE 611 (1208)
Q Consensus 538 ~~~r~lsl~~~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~ 611 (1208)
..++.+++....+... ....+..++.|+.+.+. .+.+.. .+..|..+++|++|||++|.+. .+|. .++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~-----~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS-----NSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECT-----TSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCc-----CCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence 4567777766655442 22345566777776665 121111 1235778888888888888887 5777 788
Q ss_pred cCCcccEEeecCCCcc-ccchhh-ccCCcccEEecCCCccccccchh---cccccccceeecccccccccccCCccCCCC
Q 000962 612 ELKLLRYLDLSRTEIK-VLPNSI-CNLYNLQTLKLIGCIWIMELPKD---LANLVKLRNLELEEMFWFKCSTLPAGIGKL 686 (1208)
Q Consensus 612 ~l~~Lr~L~L~~~~i~-~lp~~i-~~L~~L~~L~L~~~~~~~~lp~~---i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l 686 (1208)
++++|++|+|++|.+. .+|..+ .++++|++|++++|.+.+..|.. +.++++|++|++++|.+.. ..| ++++
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~--~~~l 199 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--DVD--VSRC 199 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES--CCB--CTTC
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc--cCC--cccC
Confidence 8888888888888776 445544 78888888888888866666665 6788888888888887653 222 3778
Q ss_pred CcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHH
Q 000962 687 TNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEER 766 (1208)
Q Consensus 687 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 766 (1208)
++|++|++.++.. .+..+. ++++++|+ .|.+..... .......+..+++|+.|+++.|......+
T Consensus 200 ~~L~~L~Ls~n~l-~~~~~~-l~~l~~L~-~L~Ls~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----------- 264 (768)
T 3rgz_A 200 VNLEFLDVSSNNF-STGIPF-LGDCSALQ-HLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIP----------- 264 (768)
T ss_dssp TTCCEEECCSSCC-CSCCCB-CTTCCSCC-EEECCSSCC-CSCHHHHTTTCSSCCEEECCSSCCEESCC-----------
T ss_pred CcCCEEECcCCcC-CCCCcc-cccCCCCC-EEECcCCcC-CCcccHHHhcCCCCCEEECCCCcccCccC-----------
Confidence 8888888877543 222222 67777776 555543221 12334557778888888888876543222
Q ss_pred HhhccCCCCCCcEEEEeeeCC-CCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecCC--C
Q 000962 767 LLEDLQPHPNLEELQIFNYFG-NSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWPN--D 841 (1208)
Q Consensus 767 ~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~--~ 841 (1208)
. ..+++|+.|+++++.. +.+|.++. ..+++|+.|+|++|.+.+.. .++.+++|++|+|++|...+.++. +
T Consensus 265 ---~-~~l~~L~~L~L~~n~l~~~ip~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l 339 (768)
T 3rgz_A 265 ---P-LPLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339 (768)
T ss_dssp ---C-CCCTTCCEEECCSSEEEESCCCCSC-TTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH
T ss_pred ---c-cccCCCCEEECcCCccCCccCHHHH-hhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH
Confidence 1 1567888888885543 37777763 23488888888888877554 678888888888888876655552 5
Q ss_pred CCCccccccccCCCCCCCccCcc---CC-CcCEEEEecccccccCCC------CCchhheeeeccccccccccccccccc
Q 000962 842 EDCRFLGRLKISNCPRLNELPEC---MP-NLTVMKIKKCCSLKALPV------TPFLQFLILVDNLELENWNERCLRVIP 911 (1208)
Q Consensus 842 ~~~~~L~~L~l~~~~~l~~~~~~---~~-~L~~L~l~~c~~l~~l~~------~~~l~~l~l~~~~~~~~~~~~~~~~~~ 911 (1208)
..++.|+.|++++|...+.+|.. ++ +|+.|++.+|.-...+|. +++++.+.+.+|.....
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---------- 409 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK---------- 409 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE----------
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc----------
Confidence 67788888888888776666663 23 788888887764433332 45567777766632111
Q ss_pred CCCCCCcccccccccccccEEEecCCCCCCCCC----CCCCCCeEEEeccCCCCCCCCC-ccccccceeeecCCC-CCcc
Q 000962 912 TSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLP----QIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCP-DGTL 985 (1208)
Q Consensus 912 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~----~~~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~-~~~~ 985 (1208)
.......+++|+.|++++|.-...+| .+.+|+.|++++|.+.+.+|.. ..+++|++|++++|. .+..
T Consensus 410 -------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 410 -------IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp -------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred -------cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 11224567889999998875433333 4567899999999988788776 567899999999998 4467
Q ss_pred ccCCCCCCCCCEEeecCCCCCCcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCC--
Q 000962 986 VRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEG-- 1062 (1208)
Q Consensus 986 ~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~-- 1062 (1208)
+..+..+++|+.|++++|.+.+.+|. ++.+++|++|+|++|+..+.+| ..+..+++|+.|++++|+..+.+|...
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC--GGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 77888899999999999998888886 4888999999999998666777 578899999999999987655555210
Q ss_pred -------------------------------------------------------------------C--cCCCCEEEEe
Q 000962 1063 -------------------------------------------------------------------L--PTSLKCLIIA 1073 (1208)
Q Consensus 1063 -------------------------------------------------------------------~--~~~L~~L~l~ 1073 (1208)
+ .++|+.|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 0 1568899999
Q ss_pred cCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCC-CCCCccceEeccCChhhHHhhhcCCCCCCCCCccccCCceE-
Q 000962 1074 SCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED-GLPENLQHLVIQNCPLLTQQCRDGEAEGPEWPKIKDIPDLE- 1151 (1208)
Q Consensus 1074 ~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~L~~~~~~~~~~g~~~~~i~~l~~l~- 1151 (1208)
+|...+.+|. .++++++|+.|++++|...+.+|.. +.+++|++|++++|.. +|.+|..+++++.++
T Consensus 641 ~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l----------~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 641 YNMLSGYIPK--EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL----------DGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSCCBSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC----------EECCCGGGGGCCCCSE
T ss_pred CCcccccCCH--HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc----------cCcCChHHhCCCCCCE
Confidence 9987778887 8999999999999999877788876 6678999999999987 888888888888775
Q ss_pred ECceeccCCCCcccccccccccccccCCCccccccccCCCCCCCccccc
Q 000962 1152 IDFICNRSPIMPEKKKASWYRPLVGRGGLKGRKQMEQGEPSGLAGCSKY 1200 (1208)
Q Consensus 1152 i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 1200 (1208)
++.++|+ ..|.+|...|+..+.+.+|.|+..+
T Consensus 709 L~ls~N~-----------------l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 709 IDLSNNN-----------------LSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCSSE-----------------EEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred EECcCCc-----------------ccccCCCchhhccCCHHHhcCCchh
Confidence 5655443 5666777777888888888776543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-40 Score=418.76 Aligned_cols=424 Identities=20% Similarity=0.145 Sum_probs=269.8
Q ss_pred cccCCCCceEEecccCCCccchhhhhHHH--HhccCCcccEEecCCCCCc-cccccc-ccCCcccEEeecCCCcccc-ch
Q 000962 557 VVENSKKLRTFLVPSFGEHLKDFGRALDK--IFHQLKYLRLLDLSSSTLT-VLPDSV-EELKLLRYLDLSRTEIKVL-PN 631 (1208)
Q Consensus 557 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~--~~~~l~~Lr~L~L~~~~i~-~lp~~i-~~l~~Lr~L~L~~~~i~~l-p~ 631 (1208)
.+..+++|++|.+. .+.+.+.++. .+.++++|++|+|++|.+. .+|..+ .++++|++|+|++|.++.. |.
T Consensus 95 ~~~~l~~L~~L~Ls-----~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 169 (768)
T 3rgz_A 95 GFKCSASLTSLDLS-----RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169 (768)
T ss_dssp CCCCCTTCCEEECC-----SSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred hhccCCCCCEEECC-----CCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence 46788889999887 4445444444 6888999999999999887 556554 7889999999999988855 44
Q ss_pred h---hccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhh
Q 000962 632 S---ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEEL 708 (1208)
Q Consensus 632 ~---i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l 708 (1208)
. +.++++|++|++++|.+.+..| +..+++|++|++++|.+. +.+|. ++++++|++|++.++ ...+..+..+
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~--~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l 243 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS--TGIPF-LGDCSALQHLDISGN-KLSGDFSRAI 243 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCC--SCCCB-CTTCCSCCEEECCSS-CCCSCHHHHT
T ss_pred hhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCC--CCCcc-cccCCCCCEEECcCC-cCCCcccHHH
Confidence 4 7889999999999988666554 378889999999998764 33454 888999999988874 4455566778
Q ss_pred cCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCC-CCCCcEEEEeeeC-
Q 000962 709 KELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQP-HPNLEELQIFNYF- 786 (1208)
Q Consensus 709 ~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~- 786 (1208)
..+++|+ .|.+...... ...... .+++|+.|+++.|......| ..+.. +++|+.|+++++.
T Consensus 244 ~~l~~L~-~L~Ls~n~l~--~~~~~~-~l~~L~~L~L~~n~l~~~ip-------------~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 244 STCTELK-LLNISSNQFV--GPIPPL-PLKSLQYLSLAENKFTGEIP-------------DFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp TTCSSCC-EEECCSSCCE--ESCCCC-CCTTCCEEECCSSEEEESCC-------------CCSCTTCTTCSEEECCSSEE
T ss_pred hcCCCCC-EEECCCCccc--CccCcc-ccCCCCEEECcCCccCCccC-------------HHHHhhcCcCCEEECcCCcC
Confidence 8888887 5555443221 111122 67889999998875543222 23333 4788999988544
Q ss_pred CCCCCcccccCCCCceeEEEEeCcCCCCcc---ccCCCCCccEEEEeCCCCceecC-CCCCCc-cccccccCCCCCCCcc
Q 000962 787 GNSLPQWMRDGRLQNLVSLTLKGCTNCRIL---SLGQLSSLRVLNIKGMLELEKWP-NDEDCR-FLGRLKISNCPRLNEL 861 (1208)
Q Consensus 787 ~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~---~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~-~L~~L~l~~~~~l~~~ 861 (1208)
.+.+|.++ +.+++|+.|+|++|.+.+.+ .++.+++|++|++++|...+.++ .+..+. .|+.|++++|...+.+
T Consensus 307 ~~~~p~~~--~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 307 YGAVPPFF--GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp EECCCGGG--GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred CCccchHH--hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 34677777 66888999999988877544 37888899999998887664444 334454 7888888888776666
Q ss_pred Ccc-----CCCcCEEEEecccccccCC----CCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEE
Q 000962 862 PEC-----MPNLTVMKIKKCCSLKALP----VTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEM 932 (1208)
Q Consensus 862 ~~~-----~~~L~~L~l~~c~~l~~l~----~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 932 (1208)
|.. +++|+.|++.+|.-...+| .+++++.+++.+|....... .....+++|+.|
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-----------------~~l~~l~~L~~L 447 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-----------------SSLGSLSKLRDL 447 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC-----------------GGGGGCTTCCEE
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc-----------------HHHhcCCCCCEE
Confidence 552 5678888888876554444 35667777777763211110 112234445555
Q ss_pred EecCCCCCCCCC----CCCCCCeEEEeccCCCCCCCCC-ccccccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCC
Q 000962 933 KAINCPKLRGLP----QIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNL 1006 (1208)
Q Consensus 933 ~l~~c~~L~~l~----~~~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~-~~~~~~~l~~l~~L~~L~ls~n~~~ 1006 (1208)
++.+|.-...+| .+.+|+.|++++|.+.+.+|.. ..+++|++|++++|. .+..|..+..+++|+.|++++|.+.
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 555444332222 2334445555555444444433 334445555555554 2234444444455555555555444
Q ss_pred CcCCC-CCCCCCcceEEEcCCC
Q 000962 1007 DSFPR-WPNLPGLKALYIRDCK 1027 (1208)
Q Consensus 1007 ~~~~~-~~~l~~L~~L~L~~c~ 1027 (1208)
+.+|. +..+++|+.|++++|+
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCHHHcCCCCCCEEECCCCc
Confidence 44443 3444455555555444
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.8e-39 Score=385.86 Aligned_cols=285 Identities=19% Similarity=0.264 Sum_probs=228.5
Q ss_pred cccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccce-eEEEEecCCCChHHHHHHHHH
Q 000962 173 VFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFES-RMWVCVTVDYDLPRILKGMIE 251 (1208)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~ 251 (1208)
.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999998632 3789999999999999999999998789999987 899999999998888888777
Q ss_pred HcccCC---CC--------CCcHHHHHHHHHHHh---cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh
Q 000962 252 FHSKME---QS--------TSSISLLETRLLEFL---TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 252 ~~~~~~---~~--------~~~~~~l~~~l~~~L---~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1208)
.+.... .. ..+.+.+...+++.| .+||+||||||||+. +.|+. ++ +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~----f~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNA----FN---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHH----HH---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHh----hC---CCeEEEEeccCh
Confidence 543211 00 123455667777766 689999999999973 34443 33 689999999999
Q ss_pred hHHhhhCCCCcEeCC------CCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCC
Q 000962 318 RVSQIMGIRSPYLLE------YLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYD 391 (1208)
Q Consensus 318 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~ 391 (1208)
.++..+.....|+++ +|+++|||+||++.. +... .++..+| |+|+||||+++|+.|+.+.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~----------eeL~~eI---CgGLPLALkLaGs~Lr~k~ 341 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP----------QDLPREV---LTTNPRRLSIIAESIRDGL 341 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT----------TTHHHHH---CCCCHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH----------HHHHHHH---hCCCHHHHHHHHHHHhCCC
Confidence 998654444456676 999999999999884 2211 2233343 9999999999999999874
Q ss_pred -ChhHHHHHHhhcccccccCCCCCCCCccchhccccCCChhH-HHHHHHhccCCCCCccChHHHHHHHHHccccccCCCC
Q 000962 392 -DVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFL-KHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGG 469 (1208)
Q Consensus 392 -~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~ 469 (1208)
+.++|... ....+..+|++||+.||+++ |.||+|||+||+++.|+++.++.+|+++|
T Consensus 342 ~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-------- 400 (1221)
T 1vt4_I 342 ATWDNWKHV-------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-------- 400 (1221)
T ss_dssp SSHHHHHHC-------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC--------
T ss_pred CCHHHHhcC-------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC--------
Confidence 66788653 12468899999999999999 99999999999999999999999998876
Q ss_pred CCccHHHHHHHHHHHHHhccCcccccCCCcceEEEhhhHHHHHH
Q 000962 470 RQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQ 513 (1208)
Q Consensus 470 ~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~ 513 (1208)
++.++.++++|+++|||+.. +...+|+|||++++++.
T Consensus 401 -----eedAe~~L~eLvdRSLLq~d--~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 401 -----KSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKV 437 (1221)
T ss_dssp -----SHHHHHHHHHHHTSSSSSBC--SSSSEEBCCCHHHHHHH
T ss_pred -----HHHHHHHHHHHHhhCCEEEe--CCCCEEEehHHHHHHhc
Confidence 12478899999999999984 23568999999999663
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-37 Score=390.48 Aligned_cols=524 Identities=17% Similarity=0.149 Sum_probs=289.4
Q ss_pred CCCceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccccc-ccccCC
Q 000962 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELK 614 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~ 614 (1208)
.+..++++.+..+.+..++...+..+++|++|.+. .+.+....+..|.++++|++|+|++|.++.+|. .|++++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-----FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECC-----SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECC-----CCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 45678889988888888777778888899999887 455556666778888999999999998888876 588899
Q ss_pred cccEEeecCCCccccc-hhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCcc--CCCCCcCcC
Q 000962 615 LLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAG--IGKLTNLHN 691 (1208)
Q Consensus 615 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~--i~~l~~L~~ 691 (1208)
+|++|+|++|.+..+| ..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+... .|.. ...+++|+.
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL--KSEELDIFANSSLKK 175 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB--CHHHHGGGTTCEESE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc--CHHHhhccccccccE
Confidence 9999999999888776 4788899999999998887777777788889999999988865422 1222 235578888
Q ss_pred CCceEecccCCCChhhhcCCCCCCCceeeCCcccccc---ccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHh
Q 000962 692 LHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVN---GGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLL 768 (1208)
Q Consensus 692 L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 768 (1208)
|++.++ ...+..+..+..+.++. .+.+........ .....+ ...+|+.|++++|......+
T Consensus 176 L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~------------- 239 (680)
T 1ziw_A 176 LELSSN-QIKEFSPGCFHAIGRLF-GLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSN------------- 239 (680)
T ss_dssp EECTTC-CCCCBCTTGGGGSSEEC-EEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECT-------------
T ss_pred EECCCC-cccccChhhhhhhhhhh-hhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccCh-------------
Confidence 888764 33444444555555554 333332211110 000001 23567777777665442221
Q ss_pred hccCCC--CCCcEEEEeeeCCCCCC-cccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCce-----ec
Q 000962 769 EDLQPH--PNLEELQIFNYFGNSLP-QWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELE-----KW 838 (1208)
Q Consensus 769 ~~l~~~--~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~-----~~ 838 (1208)
..+..+ ++|+.|+++++....++ .++ +.+++|+.|++++|.+.+.. .++.+++|++|++++|.... .+
T Consensus 240 ~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp TTTGGGGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred hHhhccCcCCCCEEECCCCCcCccCcccc--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 112222 34777777755544443 444 55777777777777766654 56777777777777653221 11
Q ss_pred C-----CCCCCccccccccCCCCCCCccCc---cCCCcCEEEEecccc-cccCCCCCchhheeeeccccccccccccccc
Q 000962 839 P-----NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKIKKCCS-LKALPVTPFLQFLILVDNLELENWNERCLRV 909 (1208)
Q Consensus 839 ~-----~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~-l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~ 909 (1208)
+ .+..++.|+.|++++|...+..+. .+++|+.|++.+|.. +..++....
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f---------------------- 375 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF---------------------- 375 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTT----------------------
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhh----------------------
Confidence 1 345566777777777765544433 345566666665431 222211000
Q ss_pred ccCCCCCCcccccccccccccEEEecCCCCCC----CCCCCCCCCeEEEeccCCCCCCCCC--ccccccceeeecCCC-C
Q 000962 910 IPTSDNGQGQHLLLHSFQTLLEMKAINCPKLR----GLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCP-D 982 (1208)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~----~l~~~~~l~~L~l~~~~~l~~lp~~--~~~~~L~~L~L~~~~-~ 982 (1208)
.....+.|+.|++.+|.-.. .+..+.+|+.|++++|.+.+.+|.. ..+++|++|++++|. .
T Consensus 376 ------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 376 ------------VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp ------------GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred ------------cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 00001234444444432211 1122334455555555444333322 223455555555554 2
Q ss_pred CccccCCCCCCCCCEEeecCCCCC--CcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCC
Q 000962 983 GTLVRAIPETSSLNFLILSKISNL--DSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLP 1059 (1208)
Q Consensus 983 ~~~~~~l~~l~~L~~L~ls~n~~~--~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp 1059 (1208)
...+..+..+++|+.|++++|... +.+|. +..+++|+.|++++|. ++.++. ..+.++++|++|++++|. ++.++
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~ 520 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANIND-DMLEGLEKLEILDLQHNN-LARLW 520 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CGGGG
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCCh-hhhccccccCEEeCCCCC-ccccc
Confidence 222334444555555555555432 22232 3445555555555554 333332 234455555555555543 22221
Q ss_pred CCC--------C--cCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCCC--CCCccceEeccCC
Q 000962 1060 DEG--------L--PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDG--LPENLQHLVIQNC 1124 (1208)
Q Consensus 1060 ~~~--------~--~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~~--~~~sL~~L~l~~c 1124 (1208)
... + .++|++|++++|. ++.+|. ..+..+++|+.|++++| .++.+|... .+++|+.|++++|
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNG-FDEIPV-EVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCC-CCCCCH-HHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 110 1 1445555555543 334443 13455555555555544 344444431 2245555555555
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.2e-37 Score=415.57 Aligned_cols=314 Identities=22% Similarity=0.300 Sum_probs=248.2
Q ss_pred cCCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc-cccc-ceeEEEEecCCCC--hHH
Q 000962 169 DTANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV-REHF-ESRMWVCVTVDYD--LPR 244 (1208)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~~ 244 (1208)
+...||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34679999999999999997543 45799999999999999999999996543 4445 6777999988544 334
Q ss_pred HHHHHHHHcccCCC----CCCcHHHHHHHHHHHhcCC--ceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh
Q 000962 245 ILKGMIEFHSKMEQ----STSSISLLETRLLEFLTGQ--RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~----~~~~~~~l~~~l~~~L~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1208)
.+..++..+..... ...+.+.+.+.++..+.++ ||||||||||+. ..|. ...+||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~-------~~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLK-------AFDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHT-------TTCSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHH-------hhcCCCEEEEEcCCHH
Confidence 45666666654332 2467788999999999877 999999999864 2222 2367999999999999
Q ss_pred HHhh-hCCCCcEeCCC-CChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCChhHH
Q 000962 319 VSQI-MGIRSPYLLEY-LPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKW 396 (1208)
Q Consensus 319 v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w 396 (1208)
++.. .+....+++++ |+++||++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.+. ..|
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--------~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--------KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--------STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--------hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9854 45567899996 99999999999988543 234456799999999999999999999998764 467
Q ss_pred HHHHhhccccc---ccCCCC--CCCCccchhccccCCChhHHHHHHHhccCCCCCccChHHHHHHHHHccccccCCCCCC
Q 000962 397 RKILSSDIWEL---EEGSSN--GPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGRQ 471 (1208)
Q Consensus 397 ~~~l~~~~~~~---~~~~~~--~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~ 471 (1208)
...++...... ...... ...+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------
Confidence 76665432211 100000 12478899999999999999999999999999999999999999543
Q ss_pred ccHHHHHHHHHHHHHhccCcccccCCCcceEEEhhhHHHHHHHhcCCC
Q 000962 472 EREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVSSPY 519 (1208)
Q Consensus 472 ~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~~~~~~ 519 (1208)
++.++.++++|+++||++....++..+|+|||++|++++..+.++
T Consensus 408 ---~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ---TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 567899999999999999876556667999999999999987665
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.1e-35 Score=362.38 Aligned_cols=497 Identities=16% Similarity=0.130 Sum_probs=296.8
Q ss_pred CCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccEEeecCCCcccc-chhhccCCcc
Q 000962 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNL 639 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L 639 (1208)
+.++.|.+. .+.+..+.+..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|
T Consensus 32 ~~l~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLS-----FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECC-----CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 566666665 3444455555666777777777777777654 44567777777777777777655 5667777777
Q ss_pred cEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCC---
Q 000962 640 QTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTG--- 716 (1208)
Q Consensus 640 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~--- 716 (1208)
++|++++|.+....|..++++++|++|++++|.+.. ..+|..++++++|++|++.++. ..+..+..++.+.+++.
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC-CCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCC
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccc-eechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccc
Confidence 777777776444444566777777777777775532 1456667777777777766542 22222222333222221
Q ss_pred ceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCC------C
Q 000962 717 KLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNS------L 790 (1208)
Q Consensus 717 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~ 790 (1208)
.+.+.. +.............+|+.|++++|... ....+..+..+++|+.+.+....... +
T Consensus 185 ~L~l~~--n~l~~~~~~~~~~~~L~~L~L~~n~~~------------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 185 SLDMSL--NPIDFIQDQAFQGIKLHELTLRGNFNS------------SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp EEECTT--CCCCEECTTTTTTCEEEEEEEESCCSC------------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred eeeccC--CCcceeCcccccCceeeeeeccCCccc------------hhHHHHHhccccccccccccccccccCCccccc
Confidence 222222 222222222223337888888877442 22344556677788877776322111 1
Q ss_pred Cc-ccccCCCCceeEEEE-eCcCCCCcc-ccCCCCCccEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCc-cCC
Q 000962 791 PQ-WMRDGRLQNLVSLTL-KGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE-CMP 866 (1208)
Q Consensus 791 p~-~~~~~~l~~L~~L~L-~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~ 866 (1208)
+. ++..-.--.++.+++ ..+.+.+.. .+..+++|+.|++++|.. ..++.+..++.|+.|++++|.. +.+|. .++
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~ 328 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLP 328 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCCCCCCS
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccccCCCC
Confidence 11 110001124666666 344444444 577788888888888765 3344666677777777777766 55554 566
Q ss_pred CcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCC------
Q 000962 867 NLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKL------ 940 (1208)
Q Consensus 867 ~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L------ 940 (1208)
+|+.|++.+|.....++ ...+++|+.|+++++.--
T Consensus 329 ~L~~L~l~~n~~~~~~~---------------------------------------~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISFK---------------------------------------KVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp SCCEEEEESCSSCEECC---------------------------------------CCCCTTCCEEECCSSCEEEEEECC
T ss_pred ccceeeccCCcCccchh---------------------------------------hccCCCCCEEECcCCccCCCcchh
Confidence 67777777664433221 112344444544444211
Q ss_pred CCCCCCCCCCeEEEeccCCCCCCCCCccccccceeeecCCCCCcc-c-cCCCCCCCCCEEeecCCCCCCcCCC-CCCCCC
Q 000962 941 RGLPQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTL-V-RAIPETSSLNFLILSKISNLDSFPR-WPNLPG 1017 (1208)
Q Consensus 941 ~~l~~~~~l~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~~~~~-~-~~l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~ 1017 (1208)
..+..+.+|++|++++|.+....+....+++|+.|++++|..... + ..+..+++|+.|++++|.+....|. +..+++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred hhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 011133455777777776443222224567888888888873332 2 4677788888888888877766664 577888
Q ss_pred cceEEEcCCCCCcC-CcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEEecCCCCcccCCcCCCCCCCCCC
Q 000962 1018 LKALYIRDCKDLVS-LSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLK 1094 (1208)
Q Consensus 1018 L~~L~L~~c~~l~~-~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~ 1094 (1208)
|++|++++|..... ++ ..+..+++|++|++++|. ++.++...+. ++|++|++++|...+..|. .+..+++|+
T Consensus 450 L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~ 524 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLS--NVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSS--HYNQLYSLS 524 (606)
T ss_dssp CCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCEEGG--GTTTCTTCC
T ss_pred CCEEECCCCcCCCcchH--HhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCCcCCCcCHH--HccCCCcCC
Confidence 88888888873332 33 567788888888888885 4444333332 7788888888865444455 678888888
Q ss_pred ceeecCCCCCCCCCCC--CCCCccceEeccCChh
Q 000962 1095 DFYIEDCPLLQSFPED--GLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1095 ~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~~ 1126 (1208)
+|++++| .++.+|.. .++++|+.|++++||.
T Consensus 525 ~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred EEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 8888888 46677765 3334688888888775
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-35 Score=365.44 Aligned_cols=510 Identities=17% Similarity=0.147 Sum_probs=341.9
Q ss_pred CCCceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCC
Q 000962 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELK 614 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~ 614 (1208)
.+..++++.+..+.+.......+.++++|++|.+. .+.+..+.+..|.++++|++|+|++|.++.+ |..|++++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-----~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS-----RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-----TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCC-----CCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 45789999999999988877778999999999998 4566677778899999999999999999976 88899999
Q ss_pred cccEEeecCCCccccc-hhhccCCcccEEecCCCcccc-ccchhcccccccceeecccccccccccCCccCCCCCcCc--
Q 000962 615 LLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLH-- 690 (1208)
Q Consensus 615 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~-- 690 (1208)
+|++|+|++|.+..+| ..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.. ..|..++.+++|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT--ITVNDLQFLRENPQV 182 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE--ECTTTTHHHHHCTTC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee--cChhhhhhhhccccc
Confidence 9999999999999887 689999999999999998654 689999999999999999997753 2355677777665
Q ss_pred --CCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHh
Q 000962 691 --NLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLL 768 (1208)
Q Consensus 691 --~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 768 (1208)
+|++.++. ........+... +|+ .+.+.............+..+..|+.+.+..+........ .......+
T Consensus 183 l~~L~l~~n~-l~~~~~~~~~~~-~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l----~~~~~~~~ 255 (606)
T 3vq2_A 183 NLSLDMSLNP-IDFIQDQAFQGI-KLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL----EIFEPSIM 255 (606)
T ss_dssp CCEEECTTCC-CCEECTTTTTTC-EEE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC----SCCCGGGG
T ss_pred cceeeccCCC-cceeCcccccCc-eee-eeeccCCccchhHHHHHhccccccccccccccccccCCcc----cccChHHh
Confidence 46555432 222222222222 333 3444332222233344566777788877776644321110 00111112
Q ss_pred hccCCCCCCcEEEEe-e-eCCCCCCcccccCCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCCCceecCCCCCCcc
Q 000962 769 EDLQPHPNLEELQIF-N-YFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEKWPNDEDCRF 846 (1208)
Q Consensus 769 ~~l~~~~~L~~L~l~-~-~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 846 (1208)
..+..+ .++.+.+. . .....+|. + ..+++|+.|++++|.+.....+..+++|++|++++|.. +.++.+ .++.
T Consensus 256 ~~l~~l-~l~~l~l~~~~~~~~~~~~-~--~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~ 329 (606)
T 3vq2_A 256 EGLCDV-TIDEFRLTYTNDFSDDIVK-F--HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPF 329 (606)
T ss_dssp TTGGGS-EEEEEEECCCTTCCGGGGS-C--GGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCC-CCSS
T ss_pred hhhhhc-cHhheeccccccccccccc-c--ccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccC-CCCc
Confidence 222221 34444442 1 11222232 2 34566666666666554433555566666666666655 444444 5566
Q ss_pred ccccccCCCCCCCccCc-cCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccc
Q 000962 847 LGRLKISNCPRLNELPE-CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHS 925 (1208)
Q Consensus 847 L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1208)
|+.|++++|.....++. .+++|+.|++.++.- ..++.. ......
T Consensus 330 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l-~~~~~~----------------------------------~~~~~~ 374 (606)
T 3vq2_A 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL-SFSGCC----------------------------------SYSDLG 374 (606)
T ss_dssp CCEEEEESCSSCEECCCCCCTTCCEEECCSSCE-EEEEEC----------------------------------CHHHHC
T ss_pred cceeeccCCcCccchhhccCCCCCEEECcCCcc-CCCcch----------------------------------hhhhcc
Confidence 66666666654443322 455666666655421 111000 001223
Q ss_pred cccccEEEecCCCCCC----CCCCCCCCCeEEEeccCCCCCCC--CCccccccceeeecCCCC-CccccCCCCCCCCCEE
Q 000962 926 FQTLLEMKAINCPKLR----GLPQIFAPQKLEISGCDLLSTLP--NSEFSQRLQLLALEGCPD-GTLVRAIPETSSLNFL 998 (1208)
Q Consensus 926 ~~~L~~L~l~~c~~L~----~l~~~~~l~~L~l~~~~~l~~lp--~~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~L~~L 998 (1208)
+++|+.|++++|. ++ .+..+.+|+.|++++|.+.+..| ....+++|++|++++|.. ...+..+..+++|+.|
T Consensus 375 ~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 375 TNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 4455555555543 22 23345567899999998777666 235679999999999984 4456778899999999
Q ss_pred eecCCCCCCc-CCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEEec
Q 000962 999 ILSKISNLDS-FPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIAS 1074 (1208)
Q Consensus 999 ~ls~n~~~~~-~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l~~ 1074 (1208)
++++|.+.+. +|. +..+++|++|++++|. ++.+++ ..+.++++|++|++++|......|. .+. ++|++|++++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW-GVFDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSF 530 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTT
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccCh-hhhcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCC
Confidence 9999988773 564 6899999999999998 444433 5789999999999999964433343 232 7999999999
Q ss_pred CCCCcccCCcCCCCCCC-CCCceeecCCCCCCCC
Q 000962 1075 CSGLKSLGPRGTLKSLN-SLKDFYIEDCPLLQSF 1107 (1208)
Q Consensus 1075 c~~l~~lp~~~~l~~l~-~L~~L~l~~c~~l~~l 1107 (1208)
|. ++.+|. .+..++ +|+.|++++|+.....
T Consensus 531 N~-l~~~p~--~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 531 NR-IETSKG--ILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SC-CCCEES--CGGGSCTTCCEEECCSCCCCCSS
T ss_pred Cc-CcccCH--hHhhhcccCcEEEccCCCcccCC
Confidence 97 778988 688887 5999999999754433
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-34 Score=357.34 Aligned_cols=540 Identities=17% Similarity=0.139 Sum_probs=377.0
Q ss_pred EEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccEEe
Q 000962 542 HVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLD 620 (1208)
Q Consensus 542 ~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~ 620 (1208)
.+..+...+..++.. + .+++++|.+. .+.+..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+
T Consensus 8 ~~~cs~~~L~~ip~~-~--~~~l~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 8 VADCSHLKLTQVPDD-L--PTNITVLNLT-----HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79 (680)
T ss_dssp EEECCSSCCSSCCSC-S--CTTCSEEECC-----SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred eeECCCCCccccccc-c--CCCCcEEECC-----CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence 344445555555532 2 2789999997 4556666777899999999999999999955 67799999999999
Q ss_pred ecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecc
Q 000962 621 LSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGS 699 (1208)
Q Consensus 621 L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 699 (1208)
|++|.++.+|. .|+++++|++|++++|.+.+..|..+.++++|++|++++|.+. +..|..++++++|++|++.++.
T Consensus 80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~- 156 (680)
T 1ziw_A 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS--STKLGTQVQLENLQELLLSNNK- 156 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS--CCCCCSSSCCTTCCEEECCSSC-
T ss_pred CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc--ccCchhhcccccCCEEEccCCc-
Confidence 99999999987 6999999999999999865555578999999999999999775 3356778899999999998753
Q ss_pred cCCCChhhhc--CCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCC
Q 000962 700 KSGYRIEELK--ELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNL 777 (1208)
Q Consensus 700 ~~~~~~~~l~--~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 777 (1208)
..+.....+. .+++|+ .+.+.... ........+..+.+|+.|.+..+... ......+...+ ..++|
T Consensus 157 l~~~~~~~~~~~~~~~L~-~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~---------~~~~~~~~~~l-~~~~L 224 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLK-KLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLG---------PSLTEKLCLEL-ANTSI 224 (680)
T ss_dssp CCCBCHHHHGGGTTCEES-EEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCH---------HHHHHHHHHHH-TTSCC
T ss_pred ccccCHHHhhcccccccc-EEECCCCc-ccccChhhhhhhhhhhhhhccccccC---------hhhHHHHHHHh-hhccc
Confidence 3444444333 334454 44443221 11233344566777777777654321 01111222222 24789
Q ss_pred cEEEEeeeCCCC-CCcccccCCC--CceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecC-CCCCCccccccc
Q 000962 778 EELQIFNYFGNS-LPQWMRDGRL--QNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRLK 851 (1208)
Q Consensus 778 ~~L~l~~~~~~~-~p~~~~~~~l--~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~ 851 (1208)
+.|+++++.... .|.++ ..+ ++|+.|+|++|.+.... .++.+++|++|++++|......+ .+.+++.|+.++
T Consensus 225 ~~L~L~~n~l~~~~~~~~--~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTF--LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302 (680)
T ss_dssp CEEECTTSCCCEECTTTT--GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEE
T ss_pred cEEEccCCcccccChhHh--hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEe
Confidence 999998665443 45555 334 45999999999887765 68899999999999997776655 567788888888
Q ss_pred cCCCCCCCcc-----Cc-------cCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcc
Q 000962 852 ISNCPRLNEL-----PE-------CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQ 919 (1208)
Q Consensus 852 l~~~~~l~~~-----~~-------~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (1208)
+++|.....+ |. .+++|+.|++.++.- ..+ .
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~------------------------------------~ 345 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGI------------------------------------K 345 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCC------------------------------------C
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCC------------------------------------C
Confidence 8876433221 11 234444544444321 111 0
Q ss_pred cccccccccccEEEecCCCC-CCCCCC-------CCCCCeEEEeccCCCCCCCCC-ccccccceeeecCCCCC-ccc-cC
Q 000962 920 HLLLHSFQTLLEMKAINCPK-LRGLPQ-------IFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDG-TLV-RA 988 (1208)
Q Consensus 920 ~~~~~~~~~L~~L~l~~c~~-L~~l~~-------~~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~~~-~~~-~~ 988 (1208)
...+..+++|+.|++++|.. +..++. ...++.|++++|.+.+..|.. ..+++|+.|++++|... ..+ ..
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc
Confidence 11234567888888887642 222221 246899999999877666654 56799999999999853 333 57
Q ss_pred CCCCCCCCEEeecCCCCCCcCCC-CCCCCCcceEEEcCCCCC--cCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc-
Q 000962 989 IPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDL--VSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP- 1064 (1208)
Q Consensus 989 l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~L~~L~L~~c~~l--~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~- 1064 (1208)
+.++++|+.|++++|.+....+. +..+++|+.|++++|..- ..+| ..+.++++|+.|++++|. ++.++...+.
T Consensus 426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p--~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~ 502 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP--SPFQPLRNLTILDLSNNN-IANINDDMLEG 502 (680)
T ss_dssp GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS--CTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC--cccccCCCCCEEECCCCC-CCcCChhhhcc
Confidence 88999999999999986655543 688999999999998732 3444 578999999999999985 6677765443
Q ss_pred -CCCCEEEEecCCCCcccCCc-------CCCCCCCCCCceeecCCCCCCCCCCC--CCCCccceEeccCChhhHHhhhcC
Q 000962 1065 -TSLKCLIIASCSGLKSLGPR-------GTLKSLNSLKDFYIEDCPLLQSFPED--GLPENLQHLVIQNCPLLTQQCRDG 1134 (1208)
Q Consensus 1065 -~~L~~L~l~~c~~l~~lp~~-------~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~~L~~~~~~~ 1134 (1208)
++|++|++++|. ++.++.. ..+..+++|++|++++| .++.+|.. +.+++|++|++++|.. +..
T Consensus 503 l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l---- 575 (680)
T 1ziw_A 503 LEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNL-NTL---- 575 (680)
T ss_dssp CTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-CCC----
T ss_pred ccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCC-CcC----
Confidence 899999999987 5554220 13789999999999999 67889875 4568999999999864 110
Q ss_pred CCCCCCCCccccCCceEECce
Q 000962 1135 EAEGPEWPKIKDIPDLEIDFI 1155 (1208)
Q Consensus 1135 ~~~g~~~~~i~~l~~l~i~~~ 1155 (1208)
....+..+.++..+.+..+
T Consensus 576 --~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 576 --PASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp --CTTTTTTCTTCCEEECTTS
T ss_pred --CHhHhCCCCCCCEEECCCC
Confidence 1122344556666666554
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.6e-34 Score=353.04 Aligned_cols=500 Identities=17% Similarity=0.141 Sum_probs=287.6
Q ss_pred CCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccEEeecCCCcccc-chhhccCCcc
Q 000962 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNL 639 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L 639 (1208)
+.++.|.+. .+.+..+.+..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.+..+ |..|+++++|
T Consensus 33 ~~l~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFS-----FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECT-----TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEcc-----CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 356677665 4455555566677777777777777777744 56677777777777777777755 5567777777
Q ss_pred cEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCcee
Q 000962 640 QTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLH 719 (1208)
Q Consensus 640 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~ 719 (1208)
++|++++|.+....|..+.++++|++|++++|.+..+ ..|..+ .+++|++|++.++ .........++.+++++ .+.
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~-~l~ 183 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI-KLPKGF-PTEKLKVLDFQNN-AIHYLSKEDMSSLQQAT-NLS 183 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC-CCCTTC-CCTTCCEEECCSS-CCCEECHHHHHTTTTCC-SEE
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCccccc-Cccccc-CCcccCEEEcccC-cccccChhhhhhhcccc-eeE
Confidence 7777777774444456677777777777777755422 223333 3777777777653 33344455566666555 222
Q ss_pred eCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeC---CCCCCccccc
Q 000962 720 ISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYF---GNSLPQWMRD 796 (1208)
Q Consensus 720 l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~p~~~~~ 796 (1208)
+....+..............|+.|+++++.. ....+..+... .++.+.+.... ...++....
T Consensus 184 L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~-------------~~~~~~~l~~~-~l~~l~~~~~~~~~~~~i~~~~~- 248 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN-------------LLVIFKGLKNS-TIQSLWLGTFEDMDDEDISPAVF- 248 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEECTTCSC-------------HHHHHHHTTTC-EEEEEECCCCTTSCCCCCCGGGG-
T ss_pred EecCCCccCccChhHhhhccccccccCCchh-------------HHHHhhhcccc-chhheechhhccccccccChhHh-
Confidence 3222222222222223334677777765531 11122222211 22222222111 112222111
Q ss_pred CCC--CceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCc---cCCCcC
Q 000962 797 GRL--QNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE---CMPNLT 869 (1208)
Q Consensus 797 ~~l--~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~ 869 (1208)
..+ .+|+.|++++|.+.... .++.+++|++|++++|.....+..+..++.|+.|++++|......|. .+++|+
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 112 26888888888776665 47788888888888886655445566777888888888766544332 566777
Q ss_pred EEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCC------CC
Q 000962 870 VMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLR------GL 943 (1208)
Q Consensus 870 ~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~------~l 943 (1208)
.|++.+|.....+|. .....+++|+.|+++++.--. .+
T Consensus 329 ~L~l~~n~~~~~~~~------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 329 HLSIKGNTKRLELGT------------------------------------GCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp EEECCSCSSCCBCCS------------------------------------STTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred EEECCCCCcccccch------------------------------------hhhhccCcCCEEECCCCccccccCcchhc
Confidence 777766543322221 011234445555554443211 12
Q ss_pred CCCCCCCeEEEeccCCCCCCCCC-ccccccceeeecCCCCC-c-cccCCCCCCCCCEEeecCCCCCCcCCC-CCCCCCcc
Q 000962 944 PQIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDG-T-LVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLK 1019 (1208)
Q Consensus 944 ~~~~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~~~-~-~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~L~ 1019 (1208)
..+.+|++|++++|.+.+..|.. ..+++|++|++++|... . .+..+..+++|+.|++++|.+....|. +..+++|+
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 33445577777777655444443 34577777777777622 2 223366777777777777776655554 46677777
Q ss_pred eEEEcCCCCCcC-CcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEEecCCCCcccCCcCCCCCCCCCCce
Q 000962 1020 ALYIRDCKDLVS-LSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDF 1096 (1208)
Q Consensus 1020 ~L~L~~c~~l~~-~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L 1096 (1208)
+|++++|+.... ++....+..+++|++|++++|. ++.++...+. ++|++|++++|......|. .+.++++| .|
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~~L-~L 528 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE--ALSHLKGI-YL 528 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCGGGGG--GGTTCCSC-EE
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCCccCcCChh--HhCccccc-EE
Confidence 777777763221 1222356677777777777774 4444333232 6777777777764444444 67777777 77
Q ss_pred eecCCCCCCCCCCC--CCCCccceEeccCChh
Q 000962 1097 YIEDCPLLQSFPED--GLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1097 ~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~~ 1126 (1208)
++++|. ++.+|.. +.+++|+.|++++||.
T Consensus 529 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 529 NLASNH-ISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp ECCSSC-CCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ECcCCc-ccccCHhhcccCCCCCEEeCCCCCc
Confidence 777773 4444433 2336677777777764
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.3e-34 Score=351.51 Aligned_cols=507 Identities=15% Similarity=0.085 Sum_probs=326.4
Q ss_pred CCCceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCC
Q 000962 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELK 614 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~ 614 (1208)
.+..++++.+..+.+..+....+.++++|++|.+. .+.+..+.+..|.++++|++|+|++|.+..+ |..|++++
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT-----RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECT-----TCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECC-----CCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 46689999999999988877789999999999998 4566667778899999999999999999854 77899999
Q ss_pred cccEEeecCCCcccc-chhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCc--C
Q 000962 615 LLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLH--N 691 (1208)
Q Consensus 615 ~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~--~ 691 (1208)
+|++|++++|.++.+ |..++++++|++|++++|.+.+.-+..+..+++|++|++++|.+.. ..|..++.+++|+ .
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY--LSKEDMSSLQQATNLS 183 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE--ECHHHHHTTTTCCSEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc--cChhhhhhhcccceeE
Confidence 999999999999987 6789999999999999998555222344559999999999997652 2345678888888 5
Q ss_pred CCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhcc
Q 000962 692 LHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDL 771 (1208)
Q Consensus 692 L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l 771 (1208)
|++.++. ..+..+..+.. ..++ .+.+..... ....+..+..+....+.......... .......+..+
T Consensus 184 L~l~~n~-l~~~~~~~~~~-~~L~-~L~l~~~~~----~~~~~~~l~~~~l~~l~~~~~~~~~~-----~~i~~~~~~~l 251 (606)
T 3t6q_A 184 LNLNGND-IAGIEPGAFDS-AVFQ-SLNFGGTQN----LLVIFKGLKNSTIQSLWLGTFEDMDD-----EDISPAVFEGL 251 (606)
T ss_dssp EECTTCC-CCEECTTTTTT-CEEE-EEECTTCSC----HHHHHHHTTTCEEEEEECCCCTTSCC-----CCCCGGGGGGG
T ss_pred EecCCCc-cCccChhHhhh-cccc-ccccCCchh----HHHHhhhccccchhheechhhccccc-----cccChhHhchh
Confidence 5555432 22222222211 2222 222222211 11112222222222222221111000 00111112222
Q ss_pred CCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCceecC-CCCCCccccc
Q 000962 772 QPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGR 849 (1208)
Q Consensus 772 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~ 849 (1208)
.+. +|+.|+++++....++.... ..+++|+.|++++|.+.... .++.+++|++|++++|......+ .+..++.|+.
T Consensus 252 ~~~-~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 252 CEM-SVESINLQKHYFFNISSNTF-HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp GGS-EEEEEECTTCCCSSCCTTTT-TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred hcC-ceeEEEeecCccCccCHHHh-ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 221 45666666554444444311 44566666666666555443 45566666666666665444332 3445566666
Q ss_pred cccCCCCCCCccCc----cCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccc
Q 000962 850 LKISNCPRLNELPE----CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHS 925 (1208)
Q Consensus 850 L~l~~~~~l~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1208)
|++++|.....++. .+++|+.|++.++.--. ++. .......
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~----------------------------------~~~~~~~ 374 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDC----------------------------------CNLQLRN 374 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEE----------------------------------STTTTTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCcccc-ccC----------------------------------cchhccc
Confidence 66666655444433 34555555555432111 000 0001234
Q ss_pred cccccEEEecCCCCCC----CCCCCCCCCeEEEeccCCCCCCCCC--ccccccceeeecCCCC-CccccCCCCCCCCCEE
Q 000962 926 FQTLLEMKAINCPKLR----GLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCPD-GTLVRAIPETSSLNFL 998 (1208)
Q Consensus 926 ~~~L~~L~l~~c~~L~----~l~~~~~l~~L~l~~~~~l~~lp~~--~~~~~L~~L~L~~~~~-~~~~~~l~~l~~L~~L 998 (1208)
+++|+.|++.+|.-.. .+..+.+|++|++++|.+.+..+.. ..+++|++|++++|.. ...+..+..+++|+.|
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 4556666666554221 2334567789999999877665543 5579999999999984 4456678899999999
Q ss_pred eecCCCCCCc-CC---CCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEE
Q 000962 999 ILSKISNLDS-FP---RWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLII 1072 (1208)
Q Consensus 999 ~ls~n~~~~~-~~---~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l 1072 (1208)
++++|.+.+. ++ .+..+++|++|++++|. ++.+++ ..+.++++|++|++++|. +..++...+. ++| .|++
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEEC
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCc-cCccCh-hhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEEC
Confidence 9999987652 22 25789999999999998 554543 578999999999999996 4444333333 778 9999
Q ss_pred ecCCCCcccCCcCCCCCCCCCCceeecCCCCC
Q 000962 1073 ASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLL 1104 (1208)
Q Consensus 1073 ~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l 1104 (1208)
++|... .+++ ..+..+++|+.|++++||..
T Consensus 531 ~~N~l~-~~~~-~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 531 ASNHIS-IILP-SLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CSSCCC-CCCG-GGHHHHHTSSEEECTTCCEE
T ss_pred cCCccc-ccCH-hhcccCCCCCEEeCCCCCcc
Confidence 999754 4444 26788999999999999743
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.6e-34 Score=349.25 Aligned_cols=308 Identities=22% Similarity=0.315 Sum_probs=235.2
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc-cccc-ceeEEEEecCCCChHHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV-REHF-ESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~ 247 (1208)
...||||+.++++|.++|.... +..++|+|+||||+||||||++++++.++ +.+| +.++||+++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3569999999999999997542 34789999999999999999999997655 7889 58999999876 3334444
Q ss_pred HH---HHHcccC----CCCCCcHHHHHHHHHHHhcC--CceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh
Q 000962 248 GM---IEFHSKM----EQSTSSISLLETRLLEFLTG--QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1208)
Q Consensus 248 ~i---~~~~~~~----~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1208)
.+ +..+... .....+.+.+...+++.+.+ +++||||||||+. +.+ .. ..+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l-~~---l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVL-KA---FDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHH-HT---TCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHH-HH---hcCCCeEEEECCCcH
Confidence 43 3344321 12245667778888888876 7899999999863 222 22 257899999999998
Q ss_pred HHhhhCCCCcEeC---CCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhccCCChhH
Q 000962 319 VSQIMGIRSPYLL---EYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNK 395 (1208)
Q Consensus 319 v~~~~~~~~~~~l---~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~ 395 (1208)
++..+. ...+++ ++|+.+|+++||...++.. .....+.+++|+++|+|+||||..+|+.++.+. ..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--------~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~ 337 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK--------KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--------GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TC
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC--------cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hh
Confidence 876543 344554 5899999999999998642 122346789999999999999999999998753 46
Q ss_pred HHHHHhhccccc----ccC-CCCCCCCccchhccccCCChhHHHHHHHhccCCCCCccChHHHHHHHHHccccccCCCCC
Q 000962 396 WRKILSSDIWEL----EEG-SSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVKFWMAEALIQSRGGGR 470 (1208)
Q Consensus 396 w~~~l~~~~~~~----~~~-~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~ 470 (1208)
|...++...... ... ......+..++.+||+.||++.|.||+++|+||+++.|+.+.++..|.++
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~---------- 407 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---------- 407 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC----------
Confidence 877665432111 000 01123577899999999999999999999999999999999999999542
Q ss_pred CccHHHHHHHHHHHHHhccCcccccCCCcceEEEhhhHHHHHHHhc
Q 000962 471 QEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQMHDLFHDLAQFVS 516 (1208)
Q Consensus 471 ~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~mhdlv~~~a~~~~ 516 (1208)
.+.+..++++|+++|||+....+...+|+||+++|++++...
T Consensus 408 ----~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 ----TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ----HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 345788999999999998765455568999999999998874
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=345.59 Aligned_cols=303 Identities=15% Similarity=0.050 Sum_probs=149.2
Q ss_pred CCCceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCC
Q 000962 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELK 614 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~ 614 (1208)
.++.++++.++.+.+.......+..+++|+.|.+. + .+....+.+..|.++++|++|+|++|.+..+ |..|++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs--~--n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELG--S--QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEEC--T--TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCC--C--CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 34556666666666655554555666666666665 1 1112223344556666666666666666633 55566666
Q ss_pred cccEEeecCCCccc-cchh--hccCCcccEEecCCCccccccc-hhcccccccceeecccccccccccCCccCCCC--Cc
Q 000962 615 LLRYLDLSRTEIKV-LPNS--ICNLYNLQTLKLIGCIWIMELP-KDLANLVKLRNLELEEMFWFKCSTLPAGIGKL--TN 688 (1208)
Q Consensus 615 ~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l--~~ 688 (1208)
+|++|+|++|.+.. +|.. ++++++|++|++++|.+.+..| ..++++++|++|++++|.+.. ..|..++.+ ++
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~--~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL--VCEHELEPLQGKT 175 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC--CCSGGGHHHHHCS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe--eCHHHcccccCCc
Confidence 66666666666653 3443 6666666666666665443322 345666666666666665432 233444444 55
Q ss_pred CcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHh
Q 000962 689 LHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLL 768 (1208)
Q Consensus 689 L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 768 (1208)
|+.|++..+.. .+..+..+..+.+ .+.. ..|+.|+++.|......+. .+
T Consensus 176 L~~L~L~~n~l-~~~~~~~~~~~~~-------------------~~~~-~~L~~L~Ls~n~l~~~~~~----------~~ 224 (844)
T 3j0a_A 176 LSFFSLAANSL-YSRVSVDWGKCMN-------------------PFRN-MVLEILDVSGNGWTVDITG----------NF 224 (844)
T ss_dssp SCCCEECCSBS-CCCCCCCCCSSSC-------------------TTTT-CCBSEEBCSSCCSSTTTTS----------GG
T ss_pred cceEECCCCcc-ccccccchhhcCC-------------------cccc-CceeEEecCCCcCchhHHH----------HH
Confidence 66665554321 1111111111111 0111 1366666666644322211 00
Q ss_pred hccCCCCCCcEEEEeeeCCC------CC----CcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCce
Q 000962 769 EDLQPHPNLEELQIFNYFGN------SL----PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELE 836 (1208)
Q Consensus 769 ~~l~~~~~L~~L~l~~~~~~------~~----p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~ 836 (1208)
........++.|.+.++... .+ +..+.....++|+.|+|++|.+.... .++.+++|+.|+|++|....
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence 11112234555554411110 00 11111111356666666666655543 45666666666666665555
Q ss_pred ecC-CCCCCccccccccCCCCCCCccCc---cCCCcCEEEEec
Q 000962 837 KWP-NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKIKK 875 (1208)
Q Consensus 837 ~~~-~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~ 875 (1208)
..+ .+.+++.|+.|++++|......+. .+++|+.|++.+
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 443 345566666666666654433333 344555555554
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=5.6e-32 Score=332.92 Aligned_cols=320 Identities=18% Similarity=0.181 Sum_probs=180.4
Q ss_pred CCCceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccc-cccccCC
Q 000962 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELK 614 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~ 614 (1208)
.++.++++.+..+.+..+....+..+++|++|.+. .+.+..+.+..|.++++|++|+|++|.++.+| ..|++++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-----~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-----RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECT-----TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECC-----CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 45578888888888777666667888888888887 44455566667888888888888888888655 6688888
Q ss_pred cccEEeecCCCccccch-hhccCCcccEEecCCCcccc-ccchhcccccccceeecccccccccccCCccCCCCCcC---
Q 000962 615 LLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNL--- 689 (1208)
Q Consensus 615 ~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L--- 689 (1208)
+|++|++++|.++.+|. .++++++|++|++++|.+.. .+|..+.++++|++|++++|.+..+ .|..++.+++|
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLL 178 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE--CGGGGHHHHTCTTC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee--cHHHccchhccchh
Confidence 88888888888887776 68888888888888887544 4688888888888888888866422 23456666666
Q ss_pred -cCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHh
Q 000962 690 -HNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLL 768 (1208)
Q Consensus 690 -~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 768 (1208)
+.|++.++. ........+..+ .++ .+.+.............+..+..++.+.+.+........ ........+
T Consensus 179 ~~~L~l~~n~-l~~~~~~~~~~~-~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~----l~~~~~~~~ 251 (570)
T 2z63_A 179 NLSLDLSLNP-MNFIQPGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN----LEKFDKSAL 251 (570)
T ss_dssp CCEEECTTCC-CCEECTTTTTTC-EEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS----CEECCTTTT
T ss_pred hhhcccCCCC-ceecCHHHhccC-cce-eEecccccccccchhhhhcCccccceeeeccccccCchh----hhhcchhhh
Confidence 444444321 111112222221 222 222221111111112223334444444443322111000 000000111
Q ss_pred hccCCCCCCcEEEEeee--CCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCceecCCCCCCc
Q 000962 769 EDLQPHPNLEELQIFNY--FGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPNDEDCR 845 (1208)
Q Consensus 769 ~~l~~~~~L~~L~l~~~--~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 845 (1208)
..+..+ .++.+.+.++ .....|.++ ..+++|+.|++++|.+.... .+..+ +|++|++++|... .++. ..++
T Consensus 252 ~~l~~l-~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~ 325 (570)
T 2z63_A 252 EGLCNL-TIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLK 325 (570)
T ss_dssp GGGGGS-EEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCS
T ss_pred cccccc-chhhhhhhcchhhhhhchhhh--cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc-cccc
Confidence 111111 2344444422 223344444 44666777777776665444 45555 6777777766544 2222 3456
Q ss_pred cccccccCCCCCCCccCc-cCCCcCEEEEec
Q 000962 846 FLGRLKISNCPRLNELPE-CMPNLTVMKIKK 875 (1208)
Q Consensus 846 ~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~ 875 (1208)
.|+.+++++|......+. .+++|+.|++.+
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~ 356 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356 (570)
T ss_dssp SCCEEEEESCBSCCBCCCCBCTTCCEEECCS
T ss_pred ccCEEeCcCCccccccccccCCCCCEEeCcC
Confidence 666666666655443332 455555555544
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.2e-31 Score=332.15 Aligned_cols=102 Identities=24% Similarity=0.260 Sum_probs=62.3
Q ss_pred CcceEEEcCCCCCcCCcccCCCC--CCCCcCeEeecCCCCCccCCCCCC-cCCCCEEEEec------CCCCcccCCcCCC
Q 000962 1017 GLKALYIRDCKDLVSLSGEGALQ--SLTSLNLLSIRGCPKLETLPDEGL-PTSLKCLIIAS------CSGLKSLGPRGTL 1087 (1208)
Q Consensus 1017 ~L~~L~L~~c~~l~~~~~~~~l~--~l~~L~~L~l~~~~~l~~lp~~~~-~~~L~~L~l~~------c~~l~~lp~~~~l 1087 (1208)
+|+.|+|++|. +..+|. .+. .+++|+.|+|++|. +..+|.... .++|+.|+|++ |...+.+|. .+
T Consensus 729 ~L~~L~Ls~N~-L~~lp~--~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l 802 (876)
T 4ecn_A 729 LLTTIDLRFNK-LTSLSD--DFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT--GI 802 (876)
T ss_dssp GCCEEECCSSC-CCCCCG--GGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--TG
T ss_pred CccEEECCCCC-CccchH--HhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChH--HH
Confidence 45555555543 334442 222 45555555555543 223432211 14455555543 555667777 88
Q ss_pred CCCCCCCceeecCCCCCCCCCCCCCCCccceEeccCChh
Q 000962 1088 KSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1088 ~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~ 1126 (1208)
.++++|+.|++++|. ++.+|.. +.++|+.|++++|+.
T Consensus 803 ~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 803 TTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp GGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCTT
T ss_pred hcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCCC
Confidence 899999999999995 4889876 457999999999975
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.1e-31 Score=322.40 Aligned_cols=435 Identities=18% Similarity=0.164 Sum_probs=262.1
Q ss_pred CcccEEecCCCCCccc-ccccccCCcccEEeecCCCccccc-hhhccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 591 KYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
+.|++|+|++|.++.+ |..|.++++|++|+|++|.+..+| ..|+++++|++|++++|.+.+..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 6899999999999965 577999999999999999999776 57999999999999999866555556999999999999
Q ss_pred ccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeec
Q 000962 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1208)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 748 (1208)
++|.+..+ .+|..++++++|++|++.++........ ..+..+++|+.|++++|
T Consensus 106 s~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~--------------------------~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 106 MGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRR--------------------------IDFAGLTSLNELEIKAL 158 (549)
T ss_dssp TTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECT--------------------------TTTTTCCEEEEEEEEET
T ss_pred CCCccccc-chhhhhhccCCccEEECCCCccccccCH--------------------------hhhhcccccCeeeccCC
Confidence 99976532 4567889999999999987532221111 12344556677777766
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-----ccCCCCC
Q 000962 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-----SLGQLSS 823 (1208)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-----~l~~l~~ 823 (1208)
......+ ..+..+++|+.|+++++....+|.++. ..+++|+.|++++|.+.+.. ....+++
T Consensus 159 ~l~~~~~-------------~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 159 SLRNYQS-------------QSLKSIRDIHHLTLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp TCCEECT-------------TTTTTCSEEEEEEEECSBSTTHHHHHH-HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred cccccCh-------------hhhhccccCceEecccCcccccchhhH-hhcccccEEEccCCccccccccccchhhhhhc
Confidence 5542221 345556667777777655555555543 34667777777777665532 2334566
Q ss_pred ccEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCccCCCcCEEEEecccccccCCCCCchhheeeeccccccccc
Q 000962 824 LRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWN 903 (1208)
Q Consensus 824 L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~ 903 (1208)
|+.|++++|......+. .+ ......+++|+.+.+.+|.... ++.++..
T Consensus 225 L~~L~l~~n~l~~~~~~-----~l-----------~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~--------------- 272 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFN-----EL-----------LKLLRYILELSEVEFDDCTLNG-LGDFNPS--------------- 272 (549)
T ss_dssp CCEEEEESCEEEHHHHH-----HH-----------HGGGGGCTTCCEEEEESCEEEC-CSCCCCC---------------
T ss_pred ccceeccccccchhHHH-----HH-----------HHHhhhhccccccccccccccc-ccccccc---------------
Confidence 77777766632211100 00 0000123334444444432111 0000000
Q ss_pred ccccccccCCCCCCcccccccccccccEEEecCCCCCC-----CC----CCCCCCCeEEEeccCCCCCCCCCc--ccccc
Q 000962 904 ERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLR-----GL----PQIFAPQKLEISGCDLLSTLPNSE--FSQRL 972 (1208)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-----~l----~~~~~l~~L~l~~~~~l~~lp~~~--~~~~L 972 (1208)
.......+++++.+.+.++..-. .+ .....++.|++++|.+ ..+|... .+++|
T Consensus 273 ---------------~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L 336 (549)
T 2z81_A 273 ---------------ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSL 336 (549)
T ss_dssp ---------------TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTC
T ss_pred ---------------chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccc
Confidence 00001112222223222221000 00 0112446677777653 4555442 36777
Q ss_pred ceeeecCCCCCc-c---ccCCCCCCCCCEEeecCCCCCCcCC---CCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcC
Q 000962 973 QLLALEGCPDGT-L---VRAIPETSSLNFLILSKISNLDSFP---RWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLN 1045 (1208)
Q Consensus 973 ~~L~L~~~~~~~-~---~~~l~~l~~L~~L~ls~n~~~~~~~---~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~ 1045 (1208)
++|++++|.... . +..+..+++|+.|++++|.+....+ .+..+++|++|++++|. ++.+| ..+..+++|+
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp--~~~~~~~~L~ 413 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMP--DSCQWPEKMR 413 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCC--SCCCCCTTCC
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCC--hhhccccccc
Confidence 777777776433 2 2335667777777777776543221 14667777777777775 55666 4566777777
Q ss_pred eEeecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCCCCCCccceEeccCCh
Q 000962 1046 LLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCP 1125 (1208)
Q Consensus 1046 ~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~ 1125 (1208)
+|++++|. ++.+|. .++++|++|++++|. ++.+ ...+++|++|++++| .++.+|..+.+++|++|++++|.
T Consensus 414 ~L~Ls~N~-l~~l~~-~~~~~L~~L~Ls~N~-l~~~-----~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 414 FLNLSSTG-IRVVKT-CIPQTLEVLDVSNNN-LDSF-----SLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQ 484 (549)
T ss_dssp EEECTTSC-CSCCCT-TSCTTCSEEECCSSC-CSCC-----CCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSC
T ss_pred EEECCCCC-cccccc-hhcCCceEEECCCCC-hhhh-----cccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCc
Confidence 77777774 555553 234677777777775 4433 235677777777777 56677766566777777777775
Q ss_pred h
Q 000962 1126 L 1126 (1208)
Q Consensus 1126 ~ 1126 (1208)
.
T Consensus 485 l 485 (549)
T 2z81_A 485 L 485 (549)
T ss_dssp C
T ss_pred c
Confidence 4
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.4e-31 Score=330.30 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=65.9
Q ss_pred CCCEEeecCCCCCCcCCC-CC--CCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCcCCCCEE
Q 000962 994 SLNFLILSKISNLDSFPR-WP--NLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCL 1070 (1208)
Q Consensus 994 ~L~~L~ls~n~~~~~~~~-~~--~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~L~~L 1070 (1208)
+|+.|++++|.+. .+|. +. .+++|+.|+|++|+ ++.+| ..+.++++|++|++++|+
T Consensus 489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip--~~~~~l~~L~~L~Ls~N~----------------- 547 (636)
T 4eco_A 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFP--TQPLNSSTLKGFGIRNQR----------------- 547 (636)
T ss_dssp GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCC--CGGGGCSSCCEEECCSCB-----------------
T ss_pred CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcC--hhhhcCCCCCEEECCCCc-----------------
Confidence 5555555555444 3443 22 55555555555555 33344 344455555555555442
Q ss_pred EEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCCCCCCccceEeccCChh
Q 000962 1071 IIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1071 ~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~ 1126 (1208)
++++|...+.+|. .+.++++|++|++++|. ++.+|.. +.++|+.|++++|+.
T Consensus 548 ~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 548 DAQGNRTLREWPE--GITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp CTTCCBCCCCCCT--TGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTT
T ss_pred ccccCcccccChH--HHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCC
Confidence 1244555666776 78888888888888884 4888865 447888888888875
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=319.79 Aligned_cols=475 Identities=18% Similarity=0.173 Sum_probs=312.8
Q ss_pred CCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccc-cccccCCcccEEeecCCCccccc-hhhccCCcc
Q 000962 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLP-NSICNLYNL 639 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L 639 (1208)
+.++.|.+. .+.+..+.+..|.++++|++|+|++|.++.++ ..|+++++|++|+|++|.++.+| ..|+++++|
T Consensus 28 ~~l~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECC-----SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEcc-----CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 578999887 45566666678999999999999999999775 56999999999999999999876 689999999
Q ss_pred cEEecCCCccccccch-hcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCC---
Q 000962 640 QTLKLIGCIWIMELPK-DLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLT--- 715 (1208)
Q Consensus 640 ~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--- 715 (1208)
++|++++|. +..+|. .++++++|++|++++|.+.. ..+|..++++++|++|++.++. ........++.+.++.
T Consensus 103 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 103 QKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp CEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCC
T ss_pred ccccccccc-cccCCCccccccccccEEecCCCccce-ecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhh
Confidence 999999998 444554 68999999999999997643 2478899999999999998753 3333334444444441
Q ss_pred CceeeCCccccccc-cccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEee--eCC----C
Q 000962 716 GKLHISKLENAVNG-GEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFN--YFG----N 788 (1208)
Q Consensus 716 ~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~--~~~----~ 788 (1208)
..+.+.. +.... ....+... +|+.|+++.+.... ..+...+..+++++.+.+.. ... .
T Consensus 180 ~~L~l~~--n~l~~~~~~~~~~~-~L~~L~l~~n~~~~------------~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 180 LSLDLSL--NPMNFIQPGAFKEI-RLHKLTLRNNFDSL------------NVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp CEEECTT--CCCCEECTTTTTTC-EEEEEEEESCCSCT------------THHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred hhcccCC--CCceecCHHHhccC-cceeEecccccccc------------cchhhhhcCccccceeeeccccccCchhhh
Confidence 1333322 22211 12223333 78888888763321 12233444556666666542 111 1
Q ss_pred CCCcccccCCCC--ceeEEEEeCc-CCCCcc--ccCCCCCccEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCc
Q 000962 789 SLPQWMRDGRLQ--NLVSLTLKGC-TNCRIL--SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE 863 (1208)
Q Consensus 789 ~~p~~~~~~~l~--~L~~L~L~~~-~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 863 (1208)
.++.+.. ..+. .++.++++++ ...+.. .++.+++|++|++++|.....+..+..+ .|+.|++++|... .+|.
T Consensus 245 ~~~~~~~-~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~ 321 (570)
T 2z63_A 245 KFDKSAL-EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT 321 (570)
T ss_dssp ECCTTTT-GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB
T ss_pred hcchhhh-ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc
Confidence 1221111 1122 3667777776 333333 6778899999999988654433344445 6777777766544 3333
Q ss_pred -cCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCCC
Q 000962 864 -CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRG 942 (1208)
Q Consensus 864 -~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 942 (1208)
.+++|+.|.+.++......+.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~---------------------------------------------------------- 343 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE---------------------------------------------------------- 343 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC----------------------------------------------------------
T ss_pred ccccccCEEeCcCCcccccccc----------------------------------------------------------
Confidence 455666666555432111100
Q ss_pred CCCCCCCCeEEEeccCCCCCC--CCC-ccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCC--CCCCCCC
Q 000962 943 LPQIFAPQKLEISGCDLLSTL--PNS-EFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFP--RWPNLPG 1017 (1208)
Q Consensus 943 l~~~~~l~~L~l~~~~~l~~l--p~~-~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~--~~~~l~~ 1017 (1208)
..+++|+.|++++|.+.... +.. ..+++|++|++++|.....+..+..+++|+.|++++|.+....+ .+..+++
T Consensus 344 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp -CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred -ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 11223355566555533221 111 34578888888888755555557788888888888887766555 3578888
Q ss_pred cceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCC-ccCCCC-CCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCc
Q 000962 1018 LKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKL-ETLPDE-GLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKD 1095 (1208)
Q Consensus 1018 L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l-~~lp~~-~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~ 1095 (1208)
|++|++++|......+ ..+.++++|++|++++|... ..+|.. .-.++|++|++++|......|. .+..+++|++
T Consensus 423 L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~ 498 (570)
T 2z63_A 423 LIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--AFNSLSSLQV 498 (570)
T ss_dssp CCEEECTTSCCEECCT--TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCE
T ss_pred CCEEeCcCCcccccch--hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh--hhhcccCCCE
Confidence 8889998887444344 56788888999999888643 245532 1227888999988874444455 7888899999
Q ss_pred eeecCCCCCCCCCCC--CCCCccceEeccCChh
Q 000962 1096 FYIEDCPLLQSFPED--GLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1096 L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~~ 1126 (1208)
|++++| .++.+|.. ..+++|+.|++++|+.
T Consensus 499 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 499 LNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 999988 56666654 3457889999998875
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=325.01 Aligned_cols=484 Identities=20% Similarity=0.172 Sum_probs=306.1
Q ss_pred CCceeEEEEEccc-CCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcc-cccc--ccc
Q 000962 537 SPETRHVSLLCKH-VEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTV-LPDS--VEE 612 (1208)
Q Consensus 537 ~~~~r~lsl~~~~-~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~--i~~ 612 (1208)
-...+.+.+..+. ...+....+.++++|++|.+. .+.+....+..|.++++|++|+|++|.++. +|.. |++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls-----~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG-----SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT-----TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC-----CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 4578999998884 344545668899999999997 566666778889999999999999999984 6665 999
Q ss_pred CCcccEEeecCCCcccc--chhhccCCcccEEecCCCccccccchhcccc--cccceeecccccccccccCCccCCCCCc
Q 000962 613 LKLLRYLDLSRTEIKVL--PNSICNLYNLQTLKLIGCIWIMELPKDLANL--VKLRNLELEEMFWFKCSTLPAGIGKLTN 688 (1208)
Q Consensus 613 l~~Lr~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L--~~L~~L~l~~n~~~~~~~lp~~i~~l~~ 688 (1208)
+++|++|+|++|.+..+ +..|+++++|++|++++|.+.+..|..+..+ ++|+.|+++.|.+. +..|..++.+.+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~--~~~~~~~~~~~~ 199 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY--SRVSVDWGKCMN 199 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC--CCCCCCCCSSSC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc--cccccchhhcCC
Confidence 99999999999999866 3579999999999999999878888888888 89999999999775 445666666655
Q ss_pred ------CcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCcc
Q 000962 689 ------LHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSG 762 (1208)
Q Consensus 689 ------L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 762 (1208)
|+.|++.++. ..+..+..+...- ....+..|.+..+...... .......
T Consensus 200 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l-----------------------~~~~l~~L~l~~~~~~~~~-~~~~l~~ 254 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNG-WTVDITGNFSNAI-----------------------SKSQAFSLILAHHIMGAGF-GFHNIKD 254 (844)
T ss_dssp TTTTCCBSEEBCSSCC-SSTTTTSGGGGTS-----------------------CSCCBSEEECCSSCCBCSS-SCSSSTT
T ss_pred ccccCceeEEecCCCc-CchhHHHHHHhhc-----------------------Ccccccceecccccccccc-cccccCC
Confidence 8888887642 2222222222210 0112333333211100000 0000000
Q ss_pred chHHHhhccCCCCCCcEEEEeeeCCCCC-CcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecC
Q 000962 763 DEERLLEDLQPHPNLEELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP 839 (1208)
Q Consensus 763 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~ 839 (1208)
.....+..+ .+++|+.|+++++....+ |..+ ..+++|+.|+|++|.+.... .++.+++|++|+|++|......+
T Consensus 255 ~~~~~f~~l-~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 255 PDQNTFAGL-ARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp GGGTTTTTT-TTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred CChhhhhcc-ccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 000111111 125677777765444433 3334 45677777777777666554 56677777777777776544433
Q ss_pred -CCCCCccccccccCCCCCCCccCc---cCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCC
Q 000962 840 -NDEDCRFLGRLKISNCPRLNELPE---CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDN 915 (1208)
Q Consensus 840 -~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~ 915 (1208)
.+.+++.|+.|++++|......+. .+++|+.|++.++ .++.++.++++..+
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~L~~L------------------------ 386 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHFIPSIPDI------------------------ 386 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSSCCSCSEE------------------------
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCCcccCCCCcchh------------------------
Confidence 455667777777777754332222 3566666666664 23333333333333
Q ss_pred CCcccccccccccccEEEecCCCCCCCCCC-CCCCCeEEEeccCCCCCCCCC---ccccccceeeecCCCCCccc--cCC
Q 000962 916 GQGQHLLLHSFQTLLEMKAINCPKLRGLPQ-IFAPQKLEISGCDLLSTLPNS---EFSQRLQLLALEGCPDGTLV--RAI 989 (1208)
Q Consensus 916 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~l~~L~l~~~~~l~~lp~~---~~~~~L~~L~L~~~~~~~~~--~~l 989 (1208)
.+.++. ++.+|. ...++.|++++|.+.. ++.. ..+++|++|++++|.....+ ..+
T Consensus 387 -----------------~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 387 -----------------FLSGNK-LVTLPKINLTANLIHLSENRLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp -----------------EEESCC-CCCCCCCCTTCCEEECCSCCCCS-STTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred -----------------ccCCCC-cccccccccccceeecccCcccc-CchhhhhhcCCccceeeCCCCccccccccccc
Confidence 333322 122221 2345667777776433 2221 24577888888888743322 234
Q ss_pred CCCCCCCEEeecCCCCCCcC-----C-CCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCC
Q 000962 990 PETSSLNFLILSKISNLDSF-----P-RWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL 1063 (1208)
Q Consensus 990 ~~l~~L~~L~ls~n~~~~~~-----~-~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~ 1063 (1208)
..+++|+.|++++|.+.... + .+..+++|+.|+|++|. ++.++. ..+.++++|+.|++++| .++.+|...+
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~~ 524 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPP-GVFSHLTALRGLSLNSN-RLTVLSHNDL 524 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCT-TSSSSCCSCSEEEEESC-CCSSCCCCCC
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc-ccccCh-hHccchhhhheeECCCC-CCCccChhhh
Confidence 55778888888888765322 1 25677888888888886 555554 46788888888888888 4777777777
Q ss_pred cCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCC
Q 000962 1064 PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSF 1107 (1208)
Q Consensus 1064 ~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~l 1107 (1208)
+++|+.|++++|...+..|. . +.+|+.|++++||.....
T Consensus 525 ~~~L~~L~Ls~N~l~~~~~~--~---~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 525 PANLEILDISRNQLLAPNPD--V---FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CSCCCEEEEEEECCCCCCSC--C---CSSCCEEEEEEECCCCSS
T ss_pred hccccEEECCCCcCCCCChh--H---hCCcCEEEecCCCccccc
Confidence 78888888888874443333 2 457888888887765543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=314.10 Aligned_cols=427 Identities=18% Similarity=0.150 Sum_probs=252.7
Q ss_pred CcccEEecCCCCCcccc-cccccCCcccEEeecCCCcccc-chhhccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 591 KYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+ |..|+++++|++|++++|. +..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 56666666666666544 4566666666666666666655 4566666666666666665 3355554 5666666666
Q ss_pred ccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCc--ceEEee
Q 000962 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESL--HKLVFE 746 (1208)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L--~~L~L~ 746 (1208)
++|.+..+ .+|..++++++|++|++.++.. .+ ..+..+.+| +.|+++
T Consensus 98 ~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l-~~-----------------------------~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 98 SFNAFDAL-PICKEFGNMSQLKFLGLSTTHL-EK-----------------------------SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp CSSCCSSC-CCCGGGGGCTTCCEEEEEESSC-CG-----------------------------GGGGGGTTSCEEEEEEE
T ss_pred cCCccccc-cchhhhccCCcceEEEecCccc-ch-----------------------------hhccccccceeeEEEee
Confidence 66654321 3455666666666666655321 10 112223344 677777
Q ss_pred ecCC--CCCCCCCCCCccchHHHhhccCCCCCCcEEEE--eee-CCCCCCcccccCCCCceeEEEEeCcC-------CCC
Q 000962 747 WSNN--RDSSPQSQDVSGDEERLLEDLQPHPNLEELQI--FNY-FGNSLPQWMRDGRLQNLVSLTLKGCT-------NCR 814 (1208)
Q Consensus 747 ~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l--~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~-------~~~ 814 (1208)
+|.. ....+ ..+..+.. +.+.+ +++ ....++.... ..+++|+.|++++|. +.+
T Consensus 147 ~n~l~~~~~~~-------------~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 147 LGETYGEKEDP-------------EGLQDFNT-ESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp ECTTTTSSCCT-------------TTTTTCCE-EEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ccccccccccc-------------cccccccc-ceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeec
Confidence 6654 21111 11222211 23333 222 2222332221 446667777776664 222
Q ss_pred cc-ccCCCCCccEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCc--cCCCcCEEEEecccccccCCCCCchhhe
Q 000962 815 IL-SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPE--CMPNLTVMKIKKCCSLKALPVTPFLQFL 891 (1208)
Q Consensus 815 ~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~l~~l 891 (1208)
.+ .++.+++|+.|++++|....... ..++. ..++|+.|++.+|.--..+|..-
T Consensus 212 ~~~~l~~l~~L~~L~l~~~~l~~~~~-------------------~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~----- 267 (520)
T 2z7x_B 212 ILAKLQTNPKLSNLTLNNIETTWNSF-------------------IRILQLVWHTTVWYFSISNVKLQGQLDFRD----- 267 (520)
T ss_dssp HHHGGGGCTTCCEEEEEEEEEEHHHH-------------------HHHHHHHHTSSCSEEEEEEEEEESCCCCCC-----
T ss_pred chhhhccccchhhccccccccCHHHH-------------------HHHHHHhhhCcccEEEeecccccCccccch-----
Confidence 22 45666667777666553221100 00000 12344444444432211222100
Q ss_pred eeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCC--------CCCCCeEEEeccCCCCCC
Q 000962 892 ILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQ--------IFAPQKLEISGCDLLSTL 963 (1208)
Q Consensus 892 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~--------~~~l~~L~l~~~~~l~~l 963 (1208)
.......++.|+.+++.++.- .+|. ..+++.|++++|.+...
T Consensus 268 ---------------------------~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~- 317 (520)
T 2z7x_B 268 ---------------------------FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM- 317 (520)
T ss_dssp ---------------------------CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-
T ss_pred ---------------------------hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-
Confidence 000002334444444444432 3331 13467888888875432
Q ss_pred CCCccccccceeeecCCCC-CccccCCCCCCCCCEEeecCCCCCC--cCCC-CCCCCCcceEEEcCCCCCcCCcccCCCC
Q 000962 964 PNSEFSQRLQLLALEGCPD-GTLVRAIPETSSLNFLILSKISNLD--SFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQ 1039 (1208)
Q Consensus 964 p~~~~~~~L~~L~L~~~~~-~~~~~~l~~l~~L~~L~ls~n~~~~--~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~ 1039 (1208)
+....+++|++|++++|.. ...+..+..+++|+.|++++|.+.+ .+|. +..+++|++|++++|.....+|. ..+.
T Consensus 318 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-~~~~ 396 (520)
T 2z7x_B 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCS 396 (520)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-CSCC
T ss_pred cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc-chhc
Confidence 2224578899999999984 4467788899999999999998765 3443 58899999999999984333664 4578
Q ss_pred CCCCcCeEeecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCC--CCCCccc
Q 000962 1040 SLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED--GLPENLQ 1117 (1208)
Q Consensus 1040 ~l~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~ 1117 (1208)
.+++|++|++++|...+.+|. .++++|+.|++++|. ++.+|. .+..+++|++|++++| .++.+|.. ..+++|+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~N~-l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNK-IKSIPK--QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGG-SCCTTCCEEECCSSC-CCCCCG--GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCccCCEEECcCCCCCcchhh-hhcccCCEEECCCCc-ccccch--hhhcCCCCCEEECCCC-cCCccCHHHhccCCccc
Confidence 899999999999975555543 345799999999986 678887 6779999999999999 67789875 3457899
Q ss_pred eEeccCChh
Q 000962 1118 HLVIQNCPL 1126 (1208)
Q Consensus 1118 ~L~l~~c~~ 1126 (1208)
+|++++||.
T Consensus 472 ~L~l~~N~~ 480 (520)
T 2z7x_B 472 KIWLHTNPW 480 (520)
T ss_dssp EEECCSSCB
T ss_pred EEECcCCCC
Confidence 999999875
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.1e-31 Score=328.15 Aligned_cols=87 Identities=15% Similarity=-0.026 Sum_probs=47.7
Q ss_pred ccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCC-ccEEEEeCCCCceecCCCCCCc--
Q 000962 770 DLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSS-LRVLNIKGMLELEKWPNDEDCR-- 845 (1208)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~-L~~L~L~~~~~~~~~~~~~~~~-- 845 (1208)
.+..+++|+.|+++++....+| .+ +.+++|+.|+|++|.+.... .+..+++ |++|+|++|.....+..+....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~--~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AF--GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CC--CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcccch-hh--cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 3555566666666655555666 44 45667777777777666333 5666666 7777776665442222222222
Q ss_pred cccccccCCCCCCC
Q 000962 846 FLGRLKISNCPRLN 859 (1208)
Q Consensus 846 ~L~~L~l~~~~~l~ 859 (1208)
.|+.|++++|...+
T Consensus 645 ~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 645 VMGSVDFSYNKIGS 658 (876)
T ss_dssp CEEEEECCSSCTTT
T ss_pred CCCEEECcCCcCCC
Confidence 25555555554433
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.7e-30 Score=316.01 Aligned_cols=435 Identities=20% Similarity=0.185 Sum_probs=208.0
Q ss_pred HHHhccCCcccEEecCCCCCcccc-cccccCCcccEEeecCCCccccchh-hccCCcccEEecCCCcccc-ccchhcccc
Q 000962 584 DKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIM-ELPKDLANL 660 (1208)
Q Consensus 584 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~-~lp~~i~~L 660 (1208)
+..|.++++|++|+|++|.++.++ ..|+++++|++|+|++|.+..+|.. |+++++|++|++++|.+.. ..|..+.++
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 334455555555555555555332 3455555555555555555544432 5555555555555554322 234445555
Q ss_pred cccceeecccccccccccCC-ccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccC
Q 000962 661 VKLRNLELEEMFWFKCSTLP-AGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKES 739 (1208)
Q Consensus 661 ~~L~~L~l~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~ 739 (1208)
++|++|++++|.. .+.+| ..++.+++|++|++.++ ...+..+..++.+++|+ .+.+...... ......+..+++
T Consensus 123 ~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~-~~~~~~~~~l~~ 197 (549)
T 2z81_A 123 TNLQTLRIGNVET--FSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIH-HLTLHLSESA-FLLEIFADILSS 197 (549)
T ss_dssp TTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEE-EEEEECSBST-THHHHHHHSTTT
T ss_pred CCccEEECCCCcc--ccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCc-eEecccCccc-ccchhhHhhccc
Confidence 5555555555431 12233 24455555555555442 22222333344444333 2222211110 001111234677
Q ss_pred cceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCC-----CCCcccccCCCCceeEEEEeCcCCCC
Q 000962 740 LHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGN-----SLPQWMRDGRLQNLVSLTLKGCTNCR 814 (1208)
Q Consensus 740 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~~~~~~ 814 (1208)
|+.|+++.|......... ......+++|+.|+++++... .++..+ ..+++|+.|++++|.+.+
T Consensus 198 L~~L~L~~n~l~~~~~~~----------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~--~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 198 VRYLELRDTNLARFQFSP----------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLL--RYILELSEVEFDDCTLNG 265 (549)
T ss_dssp BSEEEEESCBCTTCCCCC----------CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG--GGCTTCCEEEEESCEEEC
T ss_pred ccEEEccCCccccccccc----------cchhhhhhcccceeccccccchhHHHHHHHHh--hhhccccccccccccccc
Confidence 888888877654321100 011234567888888754321 122222 346788888888887654
Q ss_pred cc--------ccCCCCCccEEEEeCCCCceecC--CC----CCCccccccccCCCCCCCccCc----cCCCcCEEEEecc
Q 000962 815 IL--------SLGQLSSLRVLNIKGMLELEKWP--ND----EDCRFLGRLKISNCPRLNELPE----CMPNLTVMKIKKC 876 (1208)
Q Consensus 815 ~~--------~l~~l~~L~~L~L~~~~~~~~~~--~~----~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c 876 (1208)
.. .+..+++|+.|.+.++....... .+ .....++.+++++|.. ..+|. .+++|+.|++.++
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCC
Confidence 32 34667888888888774322110 00 1235677888888763 45554 3566666666554
Q ss_pred cccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCeEEEec
Q 000962 877 CSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISG 956 (1208)
Q Consensus 877 ~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~ 956 (1208)
.-...+|.. ...+..+++|+.|++++
T Consensus 345 ~l~~~~~~~------------------------------------------------------~~~~~~l~~L~~L~Ls~ 370 (549)
T 2z81_A 345 LMVEEYLKN------------------------------------------------------SACKGAWPSLQTLVLSQ 370 (549)
T ss_dssp CCCHHHHHH------------------------------------------------------HTCTTSSTTCCEEECTT
T ss_pred ccccccccc------------------------------------------------------hhhhhccccCcEEEccC
Confidence 311100000 00001112224444444
Q ss_pred cCCCCCCCC----CccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcCCCCCcCC
Q 000962 957 CDLLSTLPN----SEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSL 1032 (1208)
Q Consensus 957 ~~~l~~lp~----~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~ 1032 (1208)
|.+.+ ++. ...+++|++|++++|.....|..+..+++|++|++++|.+. .+|. ...++|++|++++|. ++.+
T Consensus 371 N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~-~~~~~L~~L~Ls~N~-l~~~ 446 (549)
T 2z81_A 371 NHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKT-CIPQTLEVLDVSNNN-LDSF 446 (549)
T ss_dssp SCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCT-TSCTTCSEEECCSSC-CSCC
T ss_pred Ccccc-cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccc-hhcCCceEEECCCCC-hhhh
Confidence 44322 111 12345566666666654455555555566666666666532 2332 112456666666665 3222
Q ss_pred cccCCCCCCCCcCeEeecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCC
Q 000962 1033 SGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCP 1102 (1208)
Q Consensus 1033 ~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~ 1102 (1208)
...+++|++|++++| .++.+|.....++|++|++++|. ++.+++ ..+..+++|+.|++++|+
T Consensus 447 -----~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 447 -----SLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQ-LKSVPD-GIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp -----CCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSC-CCCCCT-TGGGGCTTCCEEECCSSC
T ss_pred -----cccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCc-cCCcCH-HHHhcCcccCEEEecCCC
Confidence 234556666666665 34455544334556666666554 333332 135555556666665554
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.9e-29 Score=315.23 Aligned_cols=541 Identities=17% Similarity=0.118 Sum_probs=282.6
Q ss_pred CCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccccc-ccccCCcccEEeecCCCccccch-hhccCCcc
Q 000962 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SICNLYNL 639 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 639 (1208)
+.++.|++. .|.+..+++..|.++++|++|||++|.|+.+|+ .|.+|++|++|+|++|+|+.+|. .|.+|++|
T Consensus 52 ~~~~~LdLs-----~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEee-----CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 356777665 455666666667777777777777777776654 47777777777777777777764 46777777
Q ss_pred cEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCce-
Q 000962 640 QTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKL- 718 (1208)
Q Consensus 640 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L- 718 (1208)
++|++++|.+.+..+..|+++++|++|++++|.+.. ..+|..++.+++|++|++.++ ...+..+..+..+.++....
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-CCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCcccc-CCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhh
Confidence 777777776433333356777777777777776542 245666677777777777653 22333333333332222100
Q ss_pred eeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCC---CCC----C
Q 000962 719 HISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFG---NSL----P 791 (1208)
Q Consensus 719 ~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---~~~----p 791 (1208)
......+..............+..+.+..+... .......+..+..++...+..... ..+ +
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~------------~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS------------LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSS------------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred hhhcccCcccccCcccccchhhhhhhhhccccc------------ccccchhhcCCcccccccccccccccccccccccc
Confidence 111111111111112222233445555543221 111122333445555555542111 111 1
Q ss_pred cccccCCCCceeEEEEeCcCCCCcc-----ccCCCCCccEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCccCC
Q 000962 792 QWMRDGRLQNLVSLTLKGCTNCRIL-----SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMP 866 (1208)
Q Consensus 792 ~~~~~~~l~~L~~L~L~~~~~~~~~-----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 866 (1208)
..+ ..+..+..+.+..+...... .+..+++++.+.+.++.... +..+.....++.|++.+|......+..++
T Consensus 273 ~~~--~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 349 (635)
T 4g8a_A 273 SAL--EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLK 349 (635)
T ss_dssp TTT--GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CGGGGSCCCCSEEEEESCEESSCCCCBCT
T ss_pred ccc--ccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-ccccccchhhhhhhcccccccCcCcccch
Confidence 111 22344555555444322211 34556677777777664322 22233344555566665554433333555
Q ss_pred CcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCC-----
Q 000962 867 NLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLR----- 941 (1208)
Q Consensus 867 ~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~----- 941 (1208)
.|+.+.+.........+ ...+++|+.+.++.+....
T Consensus 350 ~L~~l~l~~n~~~~~~~---------------------------------------~~~l~~L~~L~ls~n~l~~~~~~~ 390 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFS---------------------------------------EVDLPSLEFLDLSRNGLSFKGCCS 390 (635)
T ss_dssp TCCEEEEESCCSCCBCC---------------------------------------CCBCTTCCEEECCSSCCBEEEECC
T ss_pred hhhhcccccccCCCCcc---------------------------------------cccccccccchhhccccccccccc
Confidence 56665554432111100 1123344444443322110
Q ss_pred -CCCCCCCCCeEEEeccCCCCCCCCCccccccceeeecCCC--CCccccCCCCCCCCCEEeecCCCCCCcCCC-CCCCCC
Q 000962 942 -GLPQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCP--DGTLVRAIPETSSLNFLILSKISNLDSFPR-WPNLPG 1017 (1208)
Q Consensus 942 -~l~~~~~l~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~--~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~ 1017 (1208)
......+++.+++..|......+....+++|+.+++.+|. .......+..+.+|+.+++++|.+....+. +..+++
T Consensus 391 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 391 QSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp HHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence 0112234466666666544433333445667777776665 222334456666777777777765555443 356667
Q ss_pred cceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEEecCCCCcccCCcCCCCCCCCCCc
Q 000962 1018 LKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKD 1095 (1208)
Q Consensus 1018 L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~ 1095 (1208)
|+.|++++|.....+.+ ..+..+++|++|++++|. ++.++...+. ++|++|+|++|. ++.+++ ..+..+++|++
T Consensus 471 L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~~ 546 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDT-FPYKCLNSLQV 546 (635)
T ss_dssp CCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCBCCC-GGGTTCTTCCE
T ss_pred hhhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCCc-CCCCCh-hHHhCCCCCCE
Confidence 77777777664443332 456667777777777763 5555443333 667777777664 444443 24666777777
Q ss_pred eeecCCCCCCCCCCC---CCCCccceEeccCChhhHHhhhcCCCCCCCCCccccCCceEECceeccCCCCcccccccccc
Q 000962 1096 FYIEDCPLLQSFPED---GLPENLQHLVIQNCPLLTQQCRDGEAEGPEWPKIKDIPDLEIDFICNRSPIMPEKKKASWYR 1172 (1208)
Q Consensus 1096 L~l~~c~~l~~lp~~---~~~~sL~~L~l~~c~~L~~~~~~~~~~g~~~~~i~~l~~l~i~~~~~~~~~~~~~~~~~~~~ 1172 (1208)
|++++|. ++.++.. .++++|++|++++||. .+.|.......|..
T Consensus 547 L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~--------------------------------~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 547 LDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDF--------------------------------ACTCEHQSFLQWIK 593 (635)
T ss_dssp EECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCB--------------------------------CCSGGGHHHHHHHH
T ss_pred EECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCC--------------------------------cccCCcHHHHHHHH
Confidence 7777763 4444332 2345677777766664 22333333344543
Q ss_pred cccccCCCccccccccCCCCCCCcccccee
Q 000962 1173 PLVGRGGLKGRKQMEQGEPSGLAGCSKYSI 1202 (1208)
Q Consensus 1173 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 1202 (1208)
.... .+....++.|..|..+.|-+-..+
T Consensus 594 ~~~~--~~~~~~~~~C~~P~~~~g~~l~~~ 621 (635)
T 4g8a_A 594 DQRQ--LLVEVERMECATPSDKQGMPVLSL 621 (635)
T ss_dssp HTTT--TBSCGGGCBBCSSTTTTTCBGGGC
T ss_pred hCCC--ccCCCCCceeCCchHHCCCEeeee
Confidence 3211 234445677888888888765554
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.6e-30 Score=320.73 Aligned_cols=101 Identities=21% Similarity=0.135 Sum_probs=64.5
Q ss_pred ccceeeecCCCCCccccCCC--CCCCCCEEeecCCCCCCcCCC-CCCCCCcceEEEc------CCCCCcCCcccCCCCCC
Q 000962 971 RLQLLALEGCPDGTLVRAIP--ETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIR------DCKDLVSLSGEGALQSL 1041 (1208)
Q Consensus 971 ~L~~L~L~~~~~~~~~~~l~--~l~~L~~L~ls~n~~~~~~~~-~~~l~~L~~L~L~------~c~~l~~~~~~~~l~~l 1041 (1208)
+|++|++++|.....+..+. .+++|+.|++++|.+.+ +|. +..+++|+.|+|+ +|...+.+| ..+.++
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p--~~l~~l 565 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP--EGITLC 565 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC--TTGGGC
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh--HHHhcC
Confidence 55556666665445555554 66777777777776655 553 4667777777774 344445555 467777
Q ss_pred CCcCeEeecCCCCCccCCCCCCcCCCCEEEEecCC
Q 000962 1042 TSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCS 1076 (1208)
Q Consensus 1042 ~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~ 1076 (1208)
++|++|++++|. ++.+|.. +.++|+.|++++|+
T Consensus 566 ~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 566 PSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp SSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCT
T ss_pred CCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCC
Confidence 788888888775 3677654 33677777777776
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=307.63 Aligned_cols=450 Identities=17% Similarity=0.136 Sum_probs=305.5
Q ss_pred eEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccEE
Q 000962 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYL 619 (1208)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L 619 (1208)
+++.+..+.+..++.... ++|+.|.+. .+.+...++..|.++++|++|+|++|.++.+ |..|+++++|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNIS-----QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECC-----SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccccccccc---ccccEEECC-----CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 567777787777664322 899999997 5666677778899999999999999999966 7789999999999
Q ss_pred eecCCCccccchhhccCCcccEEecCCCcccc-ccchhcccccccceeecccccccccccCCccCCCCCcC--cCCCceE
Q 000962 620 DLSRTEIKVLPNSICNLYNLQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNL--HNLHVFR 696 (1208)
Q Consensus 620 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L--~~L~l~~ 696 (1208)
+|++|.++.+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.. ..++.+++| +.|++.+
T Consensus 75 ~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 75 DLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp ECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEE
T ss_pred ecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeec
Confidence 9999999999987 89999999999998665 578999999999999999997653 345667777 9999988
Q ss_pred eccc-CCCChhhhcCCCCCCCceeeCCccccc--cccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCC
Q 000962 697 VGSK-SGYRIEELKELPYLTGKLHISKLENAV--NGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQP 773 (1208)
Q Consensus 697 ~~~~-~~~~~~~l~~l~~L~~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 773 (1208)
+... .+..+..+..+.. ..+.+....+.. ......+..+.+|+.|++++|..... .......+..+..
T Consensus 148 n~l~~~~~~~~~l~~l~~--~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------~~~~~~~~~~l~~ 218 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNT--ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK-------CSYFLSILAKLQT 218 (520)
T ss_dssp CTTTTSSCCTTTTTTCCE--EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT-------THHHHHHHHGGGG
T ss_pred cccccccccccccccccc--ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc-------cceeecchhhhcc
Confidence 5431 3334444554442 122332222221 22233455677788888877642110 0112223346666
Q ss_pred CCCCcEEEEeeeCCCC-----CCcccccCCCCceeEEEEeCcCCCCcc--cc-----CCCCCccEEEEeCCCCceecCCC
Q 000962 774 HPNLEELQIFNYFGNS-----LPQWMRDGRLQNLVSLTLKGCTNCRIL--SL-----GQLSSLRVLNIKGMLELEKWPND 841 (1208)
Q Consensus 774 ~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l-----~~l~~L~~L~L~~~~~~~~~~~~ 841 (1208)
+++|+.|++.++.... ++.+. ..++|+.|++++|.+.+.+ .+ +.+++|+.+++++|.. .++.
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~- 292 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLV---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ- 292 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHH---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT-
T ss_pred ccchhhccccccccCHHHHHHHHHHh---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch-
Confidence 7777777777543211 11111 1346777777777665433 33 5666666666666543 1110
Q ss_pred CCCccccccccCCCCCCCccCcc--CCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcc
Q 000962 842 EDCRFLGRLKISNCPRLNELPEC--MPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQ 919 (1208)
Q Consensus 842 ~~~~~L~~L~l~~~~~l~~~~~~--~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (1208)
.. +... -.+|+.|++.++.-. ..+
T Consensus 293 ---~~--------------~~~~~~~~~L~~L~l~~n~l~-~~~------------------------------------ 318 (520)
T 2z7x_B 293 ---SY--------------IYEIFSNMNIKNFTVSGTRMV-HML------------------------------------ 318 (520)
T ss_dssp ---HH--------------HHHHHHTCCCSEEEEESSCCC-CCC------------------------------------
T ss_pred ---hh--------------hhcccccCceeEEEcCCCccc-ccc------------------------------------
Confidence 00 0000 134666666554210 000
Q ss_pred cccccccccccEEEecCCCCCCCCCCCCCCCeEEEeccCCCCCCCCC-ccccccceeeecCCCCCc---cccCCCCCCCC
Q 000962 920 HLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGT---LVRAIPETSSL 995 (1208)
Q Consensus 920 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~~~~---~~~~l~~l~~L 995 (1208)
....+.++++|++++|.+.+.+|.. ..+++|++|++++|.... .+..+..+++|
T Consensus 319 ----------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 319 ----------------------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp ----------------------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred ----------------------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence 0012223467777777766655554 567899999999998553 34567889999
Q ss_pred CEEeecCCCCCCcCCC--CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCC-cCCCCEEEE
Q 000962 996 NFLILSKISNLDSFPR--WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL-PTSLKCLII 1072 (1208)
Q Consensus 996 ~~L~ls~n~~~~~~~~--~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~-~~~L~~L~l 1072 (1208)
+.|++++|.+.+.+|. +..+++|+.|++++|.....++. .+. ++|+.|++++|. ++.+|.... .++|++|++
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--CLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNV 451 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG--SCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEEC
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh--hhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEEC
Confidence 9999999988775663 67889999999999984444442 222 799999999994 668876432 389999999
Q ss_pred ecCCCCcccCCcCCCCCCCCCCceeecCCCC
Q 000962 1073 ASCSGLKSLGPRGTLKSLNSLKDFYIEDCPL 1103 (1208)
Q Consensus 1073 ~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~ 1103 (1208)
++|. ++.+|.. .+..+++|++|++++|+.
T Consensus 452 ~~N~-l~~l~~~-~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 452 ASNQ-LKSVPDG-IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CSSC-CCCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred CCCc-CCccCHH-HhccCCcccEEECcCCCC
Confidence 9986 7788872 488999999999999963
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.5e-28 Score=305.03 Aligned_cols=508 Identities=17% Similarity=0.114 Sum_probs=322.7
Q ss_pred CCCceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccccc-ccccCC
Q 000962 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELK 614 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~ 614 (1208)
.+..++++.++.|.+..++...|.++++|+.|.+. .+.+..+++.+|.++++|++|+|++|.++.+|. .|.+++
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls-----~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-----RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-----TCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECC-----CCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 56789999999999999888889999999999998 566777778889999999999999999998875 589999
Q ss_pred cccEEeecCCCccccch-hhccCCcccEEecCCCcccc-ccchhcccccccceeecccccccccccCCccCCCCCcCcCC
Q 000962 615 LLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNL 692 (1208)
Q Consensus 615 ~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L 692 (1208)
+|++|+|++|+++.+|. .|+++++|++|++++|.+.. .+|..+..+++|++|++++|.+..+ .|..+..+.+++.+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLL 202 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--CGGGGHHHHTCTTC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc--ccccccchhhhhhh
Confidence 99999999999999976 59999999999999998543 5688899999999999999977533 34555556665554
Q ss_pred CceEecc---cCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhh
Q 000962 693 HVFRVGS---KSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLE 769 (1208)
Q Consensus 693 ~l~~~~~---~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1208)
.....-. ........+..+ .+. .+.+.............+..+..++...+..+.......... ....
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~-~~~-~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~-------~~~~ 273 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK-------FDKS 273 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTC-EEE-EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC-------CCTT
T ss_pred hhhhhcccCcccccCcccccch-hhh-hhhhhcccccccccchhhcCCccccccccccccccccccccc-------cccc
Confidence 4332211 111111111111 001 111111100111122234445555555554443221110000 0001
Q ss_pred ccCCCCCCcEEEEeeeCCCC----CCcccccCCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCCCceecCCCCCCc
Q 000962 770 DLQPHPNLEELQIFNYFGNS----LPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEKWPNDEDCR 845 (1208)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~----~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 845 (1208)
.+.....+..+.+....... .+..+ ..+.++..+.+.++.......+....+|+.|++.+|....... ..+.
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~ 349 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLF--NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLK 349 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTT--GGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC--CBCT
T ss_pred ccccccchhhhhhhhhhhcccccchhhhh--hhhcccccccccccccccccccccchhhhhhhcccccccCcCc--ccch
Confidence 22223344444444322211 11222 3456677777777665554455556677777777764332221 2244
Q ss_pred cccccccCCCCCCCccCc-cCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCccccccc
Q 000962 846 FLGRLKISNCPRLNELPE-CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLH 924 (1208)
Q Consensus 846 ~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1208)
.++.+++.++......+. .+++|+.|.+..+.-.. ....+ ....
T Consensus 350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~----------------------------------~~~~ 394 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF-KGCCS----------------------------------QSDF 394 (635)
T ss_dssp TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE-EEECC----------------------------------HHHH
T ss_pred hhhhcccccccCCCCcccccccccccchhhcccccc-ccccc----------------------------------cchh
Confidence 555555655544332222 45666666655432110 00000 0011
Q ss_pred ccccccEEEecCCCCCC---CCCCCCCCCeEEEeccCCCCCCCCC--ccccccceeeecCCC-CCccccCCCCCCCCCEE
Q 000962 925 SFQTLLEMKAINCPKLR---GLPQIFAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEGCP-DGTLVRAIPETSSLNFL 998 (1208)
Q Consensus 925 ~~~~L~~L~l~~c~~L~---~l~~~~~l~~L~l~~~~~l~~lp~~--~~~~~L~~L~L~~~~-~~~~~~~l~~l~~L~~L 998 (1208)
...+|+.+++..+.... .+.....++.+++.+|+.....+.. ..+++++.+++++|. ....+..+..+++|+.|
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 22334444444332211 1233445677888777665554443 446899999999998 34445667888999999
Q ss_pred eecCCCCCCc-CCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEEec
Q 000962 999 ILSKISNLDS-FPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIAS 1074 (1208)
Q Consensus 999 ~ls~n~~~~~-~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l~~ 1074 (1208)
++++|..... .|. +..+++|++|+|++|. ++.+++ ..+.++++|++|+|++| .++.++...+. ++|++|++++
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh-HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC
Confidence 9999986654 443 6889999999999998 666654 57999999999999999 47777765443 8999999999
Q ss_pred CCCCcccCCcCCCCCC-CCCCceeecCCCC
Q 000962 1075 CSGLKSLGPRGTLKSL-NSLKDFYIEDCPL 1103 (1208)
Q Consensus 1075 c~~l~~lp~~~~l~~l-~~L~~L~l~~c~~ 1103 (1208)
|...+..|. .+..+ ++|+.|++++||.
T Consensus 552 N~l~~~~~~--~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 552 NHIMTSKKQ--ELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp SCCCBCCSS--CTTCCCTTCCEEECTTCCB
T ss_pred CcCCCCCHH--HHHhhhCcCCEEEeeCCCC
Confidence 985444444 78888 6899999999974
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=9.8e-28 Score=293.10 Aligned_cols=428 Identities=16% Similarity=0.109 Sum_probs=266.2
Q ss_pred CcccEEecCCCCCcccc-cccccCCcccEEeecCCCcccc-chhhccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 591 KYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
++|++|+|++|.++.+| ..|.++++|++|+|++|.++.+ |..|+++++|++|++++|. +..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEEC
Confidence 67777777777777555 4677777777777777777766 4567777777777777776 4466655 6777777777
Q ss_pred ccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCccc--CcceEEee
Q 000962 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKE--SLHKLVFE 746 (1208)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~L~ 746 (1208)
++|.+..+ .+|..++++++|++|++.++.. .. ..+..+. +|+.|+++
T Consensus 129 s~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l-~~-----------------------------~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 129 SFNDFDVL-PVCKEFGNLTKLTFLGLSAAKF-RQ-----------------------------LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp CSSCCSBC-CCCGGGGGCTTCCEEEEECSBC-CT-----------------------------TTTGGGTTSCEEEEEEE
T ss_pred CCCCcccc-CchHhhcccCcccEEecCCCcc-cc-----------------------------CchhhhhhceeeEEEee
Confidence 77755321 2345677777777777665321 11 0112222 34777887
Q ss_pred ecCC--CCCCCCCCCCccchHHHhhccCCCCCCcEE--EEeee-CCCCCCcccccCCCCceeEEEEeCcCCC-----Ccc
Q 000962 747 WSNN--RDSSPQSQDVSGDEERLLEDLQPHPNLEEL--QIFNY-FGNSLPQWMRDGRLQNLVSLTLKGCTNC-----RIL 816 (1208)
Q Consensus 747 ~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L--~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~~~-----~~~ 816 (1208)
+|.. ....+ ..+..+. .+.+ +++++ ....++.... ..+++|+.|++++|... ...
T Consensus 178 ~n~l~~~~~~~-------------~~l~~l~-~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~l~~~~ 242 (562)
T 3a79_B 178 LVSYHIKGGET-------------ESLQIPN-TTVLHLVFHPNSLFSVQVNMSV-NALGHLQLSNIKLNDENCQRLMTFL 242 (562)
T ss_dssp ESSCCCCSSSC-------------CEEEECC-EEEEEEEECSSSCCCCCCEEEE-SSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred cccccccccCc-------------ccccccC-cceEEEEecCccchhhhhhhcc-cccceEEEecccccccccchHHHHH
Confidence 7755 22211 1222211 1233 33322 2223333322 45778888888877421 111
Q ss_pred -ccCCCCCccEEEEeCCCCcee----cCCCCCCccccccccCCCCCCCccCccC-----CCcCEEEEecccccccCCCCC
Q 000962 817 -SLGQLSSLRVLNIKGMLELEK----WPNDEDCRFLGRLKISNCPRLNELPECM-----PNLTVMKIKKCCSLKALPVTP 886 (1208)
Q Consensus 817 -~l~~l~~L~~L~L~~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----~~L~~L~l~~c~~l~~l~~~~ 886 (1208)
.+..+++|+.|++.++..... ++.......|+.|++++|...+.+|..+ ++|+.|.+.++..... .+|
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p 320 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFS 320 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSC
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecC
Confidence 456777888888776532210 0000112356666666666555566544 5565555544322110 000
Q ss_pred chhheeeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCCCCCCCeEEEeccCCCCCCCCC
Q 000962 887 FLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS 966 (1208)
Q Consensus 887 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~~ 966 (1208)
.- .+.. +....++++|++++|.+.. ++..
T Consensus 321 ~~------------------------------------~~~~--------------~~~~~~L~~L~l~~n~~~~-~~~~ 349 (562)
T 3a79_B 321 KE------------------------------------ALYS--------------VFAEMNIKMLSISDTPFIH-MVCP 349 (562)
T ss_dssp HH------------------------------------HHHH--------------HHHTCCCSEEEEESSCCCC-CCCC
T ss_pred hh------------------------------------hhhh--------------hhccCcceEEEccCCCccc-ccCc
Confidence 00 0000 0001234677777776432 2211
Q ss_pred ccccccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCCC--cCC-CCCCCCCcceEEEcCCCCCcCCcccCCCCCCC
Q 000962 967 EFSQRLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNLD--SFP-RWPNLPGLKALYIRDCKDLVSLSGEGALQSLT 1042 (1208)
Q Consensus 967 ~~~~~L~~L~L~~~~-~~~~~~~l~~l~~L~~L~ls~n~~~~--~~~-~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~ 1042 (1208)
..+++|++|++++|. ....+..+..+++|+.|++++|.+.+ .+| .+..+++|+.|++++|.....+|. ..+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-RTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-CCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-hhhcCcc
Confidence 356889999999998 44467778889999999999997654 222 368899999999999984333664 4688899
Q ss_pred CcCeEeecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCC--CCCCccceEe
Q 000962 1043 SLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED--GLPENLQHLV 1120 (1208)
Q Consensus 1043 ~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~ 1120 (1208)
+|++|++++|.....+|. .++++|++|++++|. ++.+|. .+..+++|++|++++| .++.+|.. ..+++|+.|+
T Consensus 429 ~L~~L~l~~n~l~~~~~~-~l~~~L~~L~L~~N~-l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNR-IMSIPK--DVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp TCCEEECCSSCCCGGGGS-SCCTTCSEEECCSSC-CCCCCT--TTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred cCCEEECCCCCCCcchhh-hhcCcCCEEECCCCc-CcccCh--hhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence 999999999975454543 445799999999985 778988 6779999999999998 67788875 4558999999
Q ss_pred ccCChh
Q 000962 1121 IQNCPL 1126 (1208)
Q Consensus 1121 l~~c~~ 1126 (1208)
+++||.
T Consensus 504 l~~N~~ 509 (562)
T 3a79_B 504 LHDNPW 509 (562)
T ss_dssp CCSCCB
T ss_pred ecCCCc
Confidence 999875
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2e-27 Score=290.35 Aligned_cols=444 Identities=17% Similarity=0.140 Sum_probs=304.8
Q ss_pred eeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccE
Q 000962 540 TRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRY 618 (1208)
Q Consensus 540 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~ 618 (1208)
.+++.+..+.+..++... .++++.|.+. .+.+..+++..|.++++|++|+|++|.++.+ |..|+++++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls-----~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL---PPRTKALSLS-----QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CCEEECTTSCCCSCCTTS---CTTCCEEECC-----SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CcEEEcCCCCCccCCCCC---CCCcCEEECC-----CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 378888888888766432 3789999997 5666677777899999999999999999966 677999999999
Q ss_pred EeecCCCccccchhhccCCcccEEecCCCcccc-ccchhcccccccceeecccccccccccCCccCCCCCcC--cCCCce
Q 000962 619 LDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIM-ELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNL--HNLHVF 695 (1208)
Q Consensus 619 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L--~~L~l~ 695 (1208)
|+|++|.++.+|.. .+++|++|++++|.+.. .+|..+.++++|++|++++|.+.. ..+..+++| ++|++.
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTSCEEEEEEE
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-----CchhhhhhceeeEEEee
Confidence 99999999999987 89999999999998554 356899999999999999997653 234555666 999888
Q ss_pred Eeccc-CCCChhhhcCCCCCCCceeeCCccccc--cccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccC
Q 000962 696 RVGSK-SGYRIEELKELPYLTGKLHISKLENAV--NGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQ 772 (1208)
Q Consensus 696 ~~~~~-~~~~~~~l~~l~~L~~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (1208)
++... .+..+..+..+.. ..+.+....+.. ......+..+.+|+.|++++|... .......+..+.
T Consensus 178 ~n~l~~~~~~~~~l~~l~~--~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~---------~~~l~~~~~~l~ 246 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNT--TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN---------CQRLMTFLSELT 246 (562)
T ss_dssp ESSCCCCSSSCCEEEECCE--EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT---------HHHHHHHHHHHH
T ss_pred cccccccccCcccccccCc--ceEEEEecCccchhhhhhhcccccceEEEecccccccc---------cchHHHHHHHHh
Confidence 75331 3344444554431 122221111111 122334556778888888876321 112233445566
Q ss_pred CCCCCcEEEEeeeCCC-----CCCcccccCCCCceeEEEEeCcCCCCcc--cc-----CCCCCccEEEEeCCCCceecCC
Q 000962 773 PHPNLEELQIFNYFGN-----SLPQWMRDGRLQNLVSLTLKGCTNCRIL--SL-----GQLSSLRVLNIKGMLELEKWPN 840 (1208)
Q Consensus 773 ~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l-----~~l~~L~~L~L~~~~~~~~~~~ 840 (1208)
.+++|+.|++.++... .++.++ ..++|++|++++|.+.+.+ .+ ..++.|+.+++..+..
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~------ 317 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF------ 317 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC------
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhh---hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee------
Confidence 6778888888754321 122222 2347888888888776443 22 3444444444443321
Q ss_pred CCCCccccccccCCCCCCCccCc-------cCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCC
Q 000962 841 DEDCRFLGRLKISNCPRLNELPE-------CMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTS 913 (1208)
Q Consensus 841 ~~~~~~L~~L~l~~~~~l~~~~~-------~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~ 913 (1208)
.+|. .-.+|+.|++.++.-. .++
T Consensus 318 -------------------~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~------------------------------ 347 (562)
T 3a79_B 318 -------------------LFSKEALYSVFAEMNIKMLSISDTPFI-HMV------------------------------ 347 (562)
T ss_dssp -------------------SSCHHHHHHHHHTCCCSEEEEESSCCC-CCC------------------------------
T ss_pred -------------------ecChhhhhhhhccCcceEEEccCCCcc-ccc------------------------------
Confidence 1111 1134666666654210 000
Q ss_pred CCCCcccccccccccccEEEecCCCCCCCCCCCCCCCeEEEeccCCCCCCCCC-ccccccceeeecCCCCCc---cccCC
Q 000962 914 DNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQIFAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGT---LVRAI 989 (1208)
Q Consensus 914 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~~~~---~~~~l 989 (1208)
. .....++++|++++|.+.+.+|.. ..+++|++|++++|.... .+..+
T Consensus 348 --------------------~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 399 (562)
T 3a79_B 348 --------------------C--------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399 (562)
T ss_dssp --------------------C--------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred --------------------C--------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence 0 011223477777888766656554 567899999999998553 34568
Q ss_pred CCCCCCCEEeecCCCCCCcCCC--CCCCCCcceEEEcCCCCCcCCcccCCCCCC-CCcCeEeecCCCCCccCCCCCCc-C
Q 000962 990 PETSSLNFLILSKISNLDSFPR--WPNLPGLKALYIRDCKDLVSLSGEGALQSL-TSLNLLSIRGCPKLETLPDEGLP-T 1065 (1208)
Q Consensus 990 ~~l~~L~~L~ls~n~~~~~~~~--~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l-~~L~~L~l~~~~~l~~lp~~~~~-~ 1065 (1208)
..+++|+.|++++|.+.+.+|. +..+++|+.|++++|.....++ ..+ ++|++|++++| .++.+|..... +
T Consensus 400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~l~~~L~~L~L~~N-~l~~ip~~~~~l~ 473 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-----RCLPPKVKVLDLHNN-RIMSIPKDVTHLQ 473 (562)
T ss_dssp TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-----SSCCTTCSEEECCSS-CCCCCCTTTTSSC
T ss_pred cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh-----hhhcCcCCEEECCCC-cCcccChhhcCCC
Confidence 8999999999999998776764 5889999999999998433333 334 69999999999 57788865433 8
Q ss_pred CCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCC
Q 000962 1066 SLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLL 1104 (1208)
Q Consensus 1066 ~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l 1104 (1208)
+|++|++++|. ++.+|.. .+..+++|+.|++++|+..
T Consensus 474 ~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 474 ALQELNVASNQ-LKSVPDG-VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCSEEECCSSC-CCCCCTT-STTTCTTCCCEECCSCCBC
T ss_pred CCCEEECCCCC-CCCCCHH-HHhcCCCCCEEEecCCCcC
Confidence 99999999987 6788872 3899999999999999743
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.7e-27 Score=278.38 Aligned_cols=348 Identities=21% Similarity=0.152 Sum_probs=157.4
Q ss_pred cCCcccEEecCCCCCcccccccccCCcccEEeecCCCcc-ccchhhccCCcc-------------cEEecCCCccccccc
Q 000962 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIK-VLPNSICNLYNL-------------QTLKLIGCIWIMELP 654 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~~~~~lp 654 (1208)
+.+.|++|++++|.+..+|++|+++++|++|++++|.+. .+|.+++++.+| ++|++++|. +..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 357889999999999999999999999999999999887 789889988877 556666555 33344
Q ss_pred hhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCcccccccccccc
Q 000962 655 KDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKL 734 (1208)
Q Consensus 655 ~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l 734 (1208)
.. .++|++|++++|.+. .+|.. +++|+.|++.++.. . .++.
T Consensus 88 ~~---~~~L~~L~l~~n~l~---~lp~~---~~~L~~L~l~~n~l-~--------~l~~--------------------- 128 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLT---ELPEL---PQSLKSLLVDNNNL-K--------ALSD--------------------- 128 (454)
T ss_dssp SC---CTTCSEEECCSSCCS---SCCCC---CTTCCEEECCSSCC-S--------CCCS---------------------
T ss_pred CC---cCCCCEEEccCCcCC---ccccc---cCCCcEEECCCCcc-C--------cccC---------------------
Confidence 31 245666666655442 23432 23444444433210 0 0000
Q ss_pred CcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCC
Q 000962 735 SEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCR 814 (1208)
Q Consensus 735 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 814 (1208)
..++|+.|+++.|.... . ..+..+++|+.|+++++....+|.+ ..+|++|++++|.+..
T Consensus 129 -~~~~L~~L~L~~n~l~~-l--------------p~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 129 -LPPLLEYLGVSNNQLEK-L--------------PELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE 187 (454)
T ss_dssp -CCTTCCEEECCSSCCSS-C--------------CCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS
T ss_pred -CCCCCCEEECcCCCCCC-C--------------cccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc
Confidence 00244445544443321 0 0233444555555554444444432 2345555555554444
Q ss_pred ccccCCCCCccEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCccCCCcCEEEEecccccccCCCCCchhheeee
Q 000962 815 ILSLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILV 894 (1208)
Q Consensus 815 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~ 894 (1208)
...++.+++|++|++++| ... .+|...++|+.|++.+| .+..+|.+
T Consensus 188 l~~~~~l~~L~~L~l~~N-----------------------~l~-~l~~~~~~L~~L~l~~n-~l~~lp~~--------- 233 (454)
T 1jl5_A 188 LPELQNLPFLTAIYADNN-----------------------SLK-KLPDLPLSLESIVAGNN-ILEELPEL--------- 233 (454)
T ss_dssp CCCCTTCTTCCEEECCSS-----------------------CCS-SCCCCCTTCCEEECCSS-CCSSCCCC---------
T ss_pred CccccCCCCCCEEECCCC-----------------------cCC-cCCCCcCcccEEECcCC-cCCccccc---------
Confidence 334444555555555444 322 23333445555555554 22222211
Q ss_pred cccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCC-CCCCCeEEEeccCCCCCCCCCccccccc
Q 000962 895 DNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQ-IFAPQKLEISGCDLLSTLPNSEFSQRLQ 973 (1208)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~l~~L~l~~~~~l~~lp~~~~~~~L~ 973 (1208)
..+++|+.|+++++. ++.+|. ..+++.|++++|.+.+ +|.. .++|+
T Consensus 234 -----------------------------~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l~~-l~~~--~~~L~ 280 (454)
T 1jl5_A 234 -----------------------------QNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTD-LPEL--PQSLT 280 (454)
T ss_dssp -----------------------------TTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSC-CCCC--CTTCC
T ss_pred -----------------------------CCCCCCCEEECCCCc-CCcccccccccCEEECCCCcccc-cCcc--cCcCC
Confidence 123334444444331 222222 1345566666665332 3332 35666
Q ss_pred eeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCC
Q 000962 974 LLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCP 1053 (1208)
Q Consensus 974 ~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 1053 (1208)
+|++++|.....+. + .++|+.|++++|.+.+ ++.+ .++|+.|++++|. +..+|. .+++|++|++++|
T Consensus 281 ~L~ls~N~l~~l~~-~--~~~L~~L~l~~N~l~~-i~~~--~~~L~~L~Ls~N~-l~~lp~-----~~~~L~~L~L~~N- 347 (454)
T 1jl5_A 281 FLDVSENIFSGLSE-L--PPNLYYLNASSNEIRS-LCDL--PPSLEELNVSNNK-LIELPA-----LPPRLERLIASFN- 347 (454)
T ss_dssp EEECCSSCCSEESC-C--CTTCCEEECCSSCCSE-ECCC--CTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-
T ss_pred EEECcCCccCcccC-c--CCcCCEEECcCCcCCc-ccCC--cCcCCEEECCCCc-cccccc-----cCCcCCEEECCCC-
Confidence 66666665333221 1 1466666666665433 2221 1366666666665 444442 2466666677666
Q ss_pred CCccCCCCCCcCCCCEEEEecCCCCc
Q 000962 1054 KLETLPDEGLPTSLKCLIIASCSGLK 1079 (1208)
Q Consensus 1054 ~l~~lp~~~~~~~L~~L~l~~c~~l~ 1079 (1208)
.++.+|. .+++|++|++++|...+
T Consensus 348 ~l~~lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 348 HLAEVPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSS
T ss_pred ccccccc--hhhhccEEECCCCCCCc
Confidence 3555655 44666777776665333
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=8.3e-26 Score=268.92 Aligned_cols=100 Identities=22% Similarity=0.255 Sum_probs=67.3
Q ss_pred CCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecc
Q 000962 590 LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1208)
Q Consensus 590 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 669 (1208)
++.|+.|+++++.+..+|. +..+++|++|+|++|.++.+|. ++++++|++|++++|.+ ..+|. +.++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcc-ccChh-hcCCCCCCEEECC
Confidence 4567777777777777664 6777777777777777777766 77777777777777763 33443 7777777777777
Q ss_pred cccccccccCCccCCCCCcCcCCCceEe
Q 000962 670 EMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 670 ~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
+|.+. .+|. ++++++|++|++.++
T Consensus 121 ~n~l~---~~~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 121 NNQIT---DIDP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp SSCCC---CCGG-GTTCTTCSEEEEEEE
T ss_pred CCCCC---CChH-HcCCCCCCEEECCCC
Confidence 77543 2332 566666666666654
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.1e-26 Score=268.52 Aligned_cols=224 Identities=21% Similarity=0.138 Sum_probs=147.9
Q ss_pred hccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhccccccccee
Q 000962 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 666 (1208)
+.++++|++|++++|.++.+| .++.+++|++|+|++|.++.+| ++++++|++|++++|.+ ..+| ++++++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l-~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC-SCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCC-ceee--cCCCCcCCEE
Confidence 456777888888888777776 5777888888888888777775 77778888888887773 3344 7777788888
Q ss_pred ecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEee
Q 000962 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1208)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 746 (1208)
++++|.+.. +| ++.+++|++|++.++.. .+. .+..+++|+.|+++
T Consensus 112 ~L~~N~l~~---l~--~~~l~~L~~L~l~~N~l-~~l-----------------------------~l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 112 NCDTNKLTK---LD--VSQNPLLTYLNCARNTL-TEI-----------------------------DVSHNTQLTELDCH 156 (457)
T ss_dssp ECCSSCCSC---CC--CTTCTTCCEEECTTSCC-SCC-----------------------------CCTTCTTCCEEECT
T ss_pred ECCCCcCCe---ec--CCCCCcCCEEECCCCcc-cee-----------------------------ccccCCcCCEEECC
Confidence 888775543 33 66777777777654321 100 13344556666666
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCccccCCCCCccE
Q 000962 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRV 826 (1208)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~ 826 (1208)
.|...... .+..+++|+.|+++++....+| + ..+++|+.|++++|.+... .++.+++|++
T Consensus 157 ~n~~~~~~---------------~~~~l~~L~~L~ls~n~l~~l~--l--~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~ 216 (457)
T 3bz5_A 157 LNKKITKL---------------DVTPQTQLTTLDCSFNKITELD--V--SQNKLLNRLNCDTNNITKL-DLNQNIQLTF 216 (457)
T ss_dssp TCSCCCCC---------------CCTTCTTCCEEECCSSCCCCCC--C--TTCTTCCEEECCSSCCSCC-CCTTCTTCSE
T ss_pred CCCccccc---------------ccccCCcCCEEECCCCccceec--c--ccCCCCCEEECcCCcCCee-ccccCCCCCE
Confidence 65322111 2445677888888776666666 3 5578888888888877664 5777888888
Q ss_pred EEEeCCCCceecCCCCCCccccccccCCCCCCCccCccCCCcCEEEE
Q 000962 827 LNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTVMKI 873 (1208)
Q Consensus 827 L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l 873 (1208)
|++++|.... ++ +..++.|+.|++++|...+..+..+++|+.|.+
T Consensus 217 L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l 261 (457)
T 3bz5_A 217 LDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261 (457)
T ss_dssp EECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred EECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEec
Confidence 8888876554 34 566677777777777654433335555555544
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3e-25 Score=260.98 Aligned_cols=175 Identities=17% Similarity=0.127 Sum_probs=82.3
Q ss_pred CCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCC
Q 000962 613 LKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNL 692 (1208)
Q Consensus 613 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L 692 (1208)
..+|++|++++|.+..+|.+|++|++|++|++++|.+.+.+|..++++.+|+.+++..|.. .++++|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------RQAHEL 76 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------HTCSEE
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------cCCCEE
Confidence 5788888888888888888888888888888888887778888888888876666665521 233444
Q ss_pred CceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccC
Q 000962 693 HVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQ 772 (1208)
Q Consensus 693 ~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~ 772 (1208)
++.++. +..++. ..++|+.|++++|.... .+ .
T Consensus 77 ~l~~~~---------l~~lp~----------------------~~~~L~~L~l~~n~l~~-lp-------------~--- 108 (454)
T 1jl5_A 77 ELNNLG---------LSSLPE----------------------LPPHLESLVASCNSLTE-LP-------------E--- 108 (454)
T ss_dssp ECTTSC---------CSCCCS----------------------CCTTCSEEECCSSCCSS-CC-------------C---
T ss_pred EecCCc---------cccCCC----------------------CcCCCCEEEccCCcCCc-cc-------------c---
Confidence 433221 000000 01345566665554432 11 0
Q ss_pred CCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCCCceecCCCCCCcccccccc
Q 000962 773 PHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKI 852 (1208)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l 852 (1208)
.+++|+.|+++++....+|.. .++|++|++++|.+.+...++.+++|++|++++|...+ ++.. ...|+.|++
T Consensus 109 ~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L 180 (454)
T 1jl5_A 109 LPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDL--PPSLEFIAA 180 (454)
T ss_dssp CCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCC--CTTCCEEEC
T ss_pred ccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCC--cccccEEEC
Confidence 124666666665555554432 25667777777766553356666777777776664332 2211 235555555
Q ss_pred CCCC
Q 000962 853 SNCP 856 (1208)
Q Consensus 853 ~~~~ 856 (1208)
++|.
T Consensus 181 ~~n~ 184 (454)
T 1jl5_A 181 GNNQ 184 (454)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 5554
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.8e-25 Score=265.98 Aligned_cols=121 Identities=22% Similarity=0.263 Sum_probs=96.8
Q ss_pred CCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcc
Q 000962 560 NSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNL 639 (1208)
Q Consensus 560 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 639 (1208)
.++++++|.+. + +.+..+. .+..+++|++|+|++|.++.+|. ++++++|++|++++|.+..+|. ++++++|
T Consensus 44 ~l~~l~~L~l~--~---~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQAD--R---LGIKSID--GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNL 114 (466)
T ss_dssp HHHTCCEEECC--S---SCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred HhccccEEecC--C---CCCccCc--chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCC
Confidence 35667777776 2 2222221 26789999999999999998887 9999999999999999999887 9999999
Q ss_pred cEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCce
Q 000962 640 QTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVF 695 (1208)
Q Consensus 640 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~ 695 (1208)
++|++++|. +..+|. +.++++|++|++++|.+.. +| .++.+++|+.|++.
T Consensus 115 ~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~---~~-~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 115 TGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISD---IS-ALSGLTSLQQLSFG 164 (466)
T ss_dssp CEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECC---CG-GGTTCTTCSEEEEE
T ss_pred CEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCC---Ch-hhccCCcccEeecC
Confidence 999999997 555654 8999999999999997643 33 46777788777764
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.9e-25 Score=262.46 Aligned_cols=130 Identities=20% Similarity=0.206 Sum_probs=70.3
Q ss_pred cccceeeecCCCCC-ccccCCCCCCCCCEEeecCCCCCCcCC-CCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeE
Q 000962 970 QRLQLLALEGCPDG-TLVRAIPETSSLNFLILSKISNLDSFP-RWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLL 1047 (1208)
Q Consensus 970 ~~L~~L~L~~~~~~-~~~~~l~~l~~L~~L~ls~n~~~~~~~-~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L 1047 (1208)
++|++|++++|... ..+..+..+++|+.|++++|.+.+..| .+..+++|++|++++|. ++.++. ..+.++++|++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS-RMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG-GGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh-hHhcCcccCCEE
Confidence 34555555555522 233445666677777777776655544 24666777777777765 343432 355666666666
Q ss_pred eecCCCCCccCCCCCCc--CCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCC
Q 000962 1048 SIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLL 1104 (1208)
Q Consensus 1048 ~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l 1104 (1208)
++++|. ++.++...+. ++|++|++++|. ++.+|. ..+..+++|++|++++|+..
T Consensus 353 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 353 DLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCc-ccccChhhccccccccEEECCCCc-cccCCH-hHhccCCcccEEEccCCCcc
Confidence 666663 3333222221 455555555544 334443 13455556666666665433
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.9e-24 Score=255.70 Aligned_cols=129 Identities=20% Similarity=0.155 Sum_probs=77.4
Q ss_pred CeEEEeccCCCCCCCCC-ccccccceeeecCCCCCcc-ccCCCCCCCCCEEeecCCCCCCcCCC-CCCCCCcceEEEcCC
Q 000962 950 QKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGTL-VRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDC 1026 (1208)
Q Consensus 950 ~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~L~~L~L~~c 1026 (1208)
+.|++++|.+.+..|.. ..+++|++|++++|..... +..+..+++|+.|++++|.+.+..|. +..+++|++|+|++|
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 45555555544444433 3456677777777764333 44566677777777777765444343 466777777777777
Q ss_pred CCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEEecCCCCccc
Q 000962 1027 KDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSL 1081 (1208)
Q Consensus 1027 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~l 1081 (1208)
. ++.+++ ..+.++++|++|++++|. ++.+|...+. ++|++|++++|+.....
T Consensus 358 ~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 358 H-IRALGD-QSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp C-CCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred c-ccccCh-hhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCC
Confidence 6 333322 456677777777777763 5556554332 67777777777644433
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.1e-24 Score=254.04 Aligned_cols=344 Identities=13% Similarity=0.078 Sum_probs=202.7
Q ss_pred ccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCC
Q 000962 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1208)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1208)
+..+++|+.|.+. .+.+.+++ .|..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| +++++
T Consensus 38 ~~~l~~L~~L~Ls-----~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 38 EEQLATLTSLDCH-----NSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp HHHHTTCCEEECC-----SSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred hhHcCCCCEEEcc-----CCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCC
Confidence 5567888888887 33444432 4788899999999999988876 888999999999999888875 88899
Q ss_pred cccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCc
Q 000962 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGK 717 (1208)
Q Consensus 638 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~ 717 (1208)
+|++|++++|.+ ..+| +..+++|++|++++|.+.. +| ++.+++|+.|++..+...... .
T Consensus 107 ~L~~L~L~~N~l-~~l~--~~~l~~L~~L~l~~N~l~~---l~--l~~l~~L~~L~l~~n~~~~~~---~---------- 165 (457)
T 3bz5_A 107 KLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLTE---ID--VSHNTQLTELDCHLNKKITKL---D---------- 165 (457)
T ss_dssp TCCEEECCSSCC-SCCC--CTTCTTCCEEECTTSCCSC---CC--CTTCTTCCEEECTTCSCCCCC---C----------
T ss_pred cCCEEECCCCcC-Ceec--CCCCCcCCEEECCCCccce---ec--cccCCcCCEEECCCCCccccc---c----------
Confidence 999999998874 4465 8888999999999887653 33 778888888887654322211 1
Q ss_pred eeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccC
Q 000962 718 LHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDG 797 (1208)
Q Consensus 718 L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 797 (1208)
+..+++|+.|++++|..... .+..+++|+.|+++++....++ + +
T Consensus 166 ----------------~~~l~~L~~L~ls~n~l~~l----------------~l~~l~~L~~L~l~~N~l~~~~--l--~ 209 (457)
T 3bz5_A 166 ----------------VTPQTQLTTLDCSFNKITEL----------------DVSQNKLLNRLNCDTNNITKLD--L--N 209 (457)
T ss_dssp ----------------CTTCTTCCEEECCSSCCCCC----------------CCTTCTTCCEEECCSSCCSCCC--C--T
T ss_pred ----------------cccCCcCCEEECCCCcccee----------------ccccCCCCCEEECcCCcCCeec--c--c
Confidence 22334455555555433210 0334455555555544444432 2 3
Q ss_pred CCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCCCceecCCCCCCccc----------cccccCCCCCCCccCc-cCC
Q 000962 798 RLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELEKWPNDEDCRFL----------GRLKISNCPRLNELPE-CMP 866 (1208)
Q Consensus 798 ~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L----------~~L~l~~~~~l~~~~~-~~~ 866 (1208)
.+++|+.|++++|.+.+. +++.+++|++|++++|...+.. ...++.| +.+++++|..++.+|. .++
T Consensus 210 ~l~~L~~L~Ls~N~l~~i-p~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~ 286 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286 (457)
T ss_dssp TCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred cCCCCCEEECcCCccccc-CccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence 455555555555555442 3555555555555555433321 1223333 4444444444444332 223
Q ss_pred CcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEEecCCCCCCCCCC-
Q 000962 867 NLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMKAINCPKLRGLPQ- 945 (1208)
Q Consensus 867 ~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~- 945 (1208)
+|+.|+ +++|+.++.+|.
T Consensus 287 ~L~~L~-------------------------------------------------------------Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 287 KIKELD-------------------------------------------------------------VTHNTQLYLLDCQ 305 (457)
T ss_dssp TCCCCC-------------------------------------------------------------CTTCTTCCEEECT
T ss_pred cCCEEE-------------------------------------------------------------CCCCcccceeccC
Confidence 333333 333333322221
Q ss_pred CCCCCeEEEeccCCCCCCCCCccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcC
Q 000962 946 IFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRD 1025 (1208)
Q Consensus 946 ~~~l~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~ 1025 (1208)
...++.|++++| ++|++|++++|..... .+..|++|+.|++++|.+.+ ++.|..|++++
T Consensus 306 ~~~L~~L~l~~~------------~~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~ 364 (457)
T 3bz5_A 306 AAGITELDLSQN------------PKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQD-------FSSVGKIPALN 364 (457)
T ss_dssp TCCCSCCCCTTC------------TTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCB-------CTTGGGSSGGG
T ss_pred CCcceEechhhc------------ccCCEEECCCCccccc--ccccCCcCcEEECCCCCCCC-------ccccccccccC
Confidence 112233333332 4566677777663333 36677888888888876543 34566666666
Q ss_pred CCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCC
Q 000962 1026 CKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDE 1061 (1208)
Q Consensus 1026 c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~ 1061 (1208)
|. +.+ ...+.+|+.+++++|...+.+|..
T Consensus 365 n~----l~g---~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 365 NN----FEA---EGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TS----EEE---EEEEEECCCBCCBTTBEEEECCTT
T ss_pred Cc----EEe---cceeeecCccccccCcEEEEcChh
Confidence 65 111 134566777888888766677653
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.4e-23 Score=239.92 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=65.8
Q ss_pred ccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceee
Q 000962 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 667 (1208)
..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEE
Confidence 467788888888888888765 8888888888888888888877 8888888888888886 44454 578888888888
Q ss_pred cccccc
Q 000962 668 LEEMFW 673 (1208)
Q Consensus 668 l~~n~~ 673 (1208)
+++|.+
T Consensus 117 l~~n~i 122 (347)
T 4fmz_A 117 LNEDNI 122 (347)
T ss_dssp CTTSCC
T ss_pred CcCCcc
Confidence 887754
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.4e-22 Score=235.31 Aligned_cols=104 Identities=22% Similarity=0.284 Sum_probs=72.5
Q ss_pred cCCcccEEecCCCCCcccccc-cccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchhccccccccee
Q 000962 589 QLKYLRLLDLSSSTLTVLPDS-VEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 666 (1208)
.+.+|++|+++++.++.+|.. +..+++|++|+|++|.+..+|. .|+++++|++|++++|.+....|..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 356778888888887777765 5777888888888888776654 67788888888888877555555567778888888
Q ss_pred ecccccccccccCCccC-CCCCcCcCCCce
Q 000962 667 ELEEMFWFKCSTLPAGI-GKLTNLHNLHVF 695 (1208)
Q Consensus 667 ~l~~n~~~~~~~lp~~i-~~l~~L~~L~l~ 695 (1208)
++++|.+ ..+|..+ +++++|++|++.
T Consensus 123 ~L~~n~l---~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 123 VLERNDL---SSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp ECCSSCC---CCCCTTTTTTCTTCCEEECC
T ss_pred ECCCCcc---CcCCHHHhcCCCCCcEEECC
Confidence 8877744 3445443 555555555544
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-22 Score=235.94 Aligned_cols=214 Identities=16% Similarity=0.103 Sum_probs=151.4
Q ss_pred CCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccccc-ccccCCcccEEeecCCCccccch-hhccCC
Q 000962 560 NSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SICNLY 637 (1208)
Q Consensus 560 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~ 637 (1208)
.+++++.+.+. .+.+..+++..|..+++|++|+|++|.++.+|. .|..+++|++|+|++|.+..+|. .+++++
T Consensus 43 ~l~~l~~l~l~-----~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEE-----SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEec-----CCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 46788888887 455666777788999999999999999997764 79999999999999999998754 589999
Q ss_pred cccEEecCCCccccccchh-cccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCC
Q 000962 638 NLQTLKLIGCIWIMELPKD-LANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTG 716 (1208)
Q Consensus 638 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 716 (1208)
+|++|++++|. +..+|.. +.++++|++|++++|.+.. ..|..++.+++|++|++.++.. ...
T Consensus 118 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l-~~~------------- 180 (390)
T 3o6n_A 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRL-THV------------- 180 (390)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCCEEECCSSCC-SBC-------------
T ss_pred CCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCCEEECCCCcC-Ccc-------------
Confidence 99999999998 5577766 5899999999999997642 2345678889999998876421 110
Q ss_pred ceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCccccc
Q 000962 717 KLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRD 796 (1208)
Q Consensus 717 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 796 (1208)
.+..+++|+.|++++|... .+..+++|+.|+++++....+|...
T Consensus 181 ----------------~~~~l~~L~~L~l~~n~l~------------------~~~~~~~L~~L~l~~n~l~~~~~~~-- 224 (390)
T 3o6n_A 181 ----------------DLSLIPSLFHANVSYNLLS------------------TLAIPIAVEELDASHNSINVVRGPV-- 224 (390)
T ss_dssp ----------------CGGGCTTCSEEECCSSCCS------------------EEECCSSCSEEECCSSCCCEEECCC--
T ss_pred ----------------ccccccccceeeccccccc------------------ccCCCCcceEEECCCCeeeeccccc--
Confidence 1233455666666655332 2233446666766665555554432
Q ss_pred CCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCC
Q 000962 797 GRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGML 833 (1208)
Q Consensus 797 ~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~ 833 (1208)
+++|+.|++++|.+.....++.+++|++|+|++|.
T Consensus 225 --~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 225 --NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp --CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred --cccccEEECCCCCCcccHHHcCCCCccEEECCCCc
Confidence 45666666666655554455555666666665553
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.1e-22 Score=232.37 Aligned_cols=125 Identities=24% Similarity=0.283 Sum_probs=92.8
Q ss_pred ccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCC
Q 000962 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLY 637 (1208)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 637 (1208)
+..+++|+.|.+. .+.+..+. .+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+.+++
T Consensus 40 ~~~l~~L~~L~l~-----~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVA-----GEKVASIQ--GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECC-----SSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred chhcccccEEEEe-----CCccccch--hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCC
Confidence 3466778888776 22222221 27789999999999999998877 899999999999999998886 589999
Q ss_pred cccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceE
Q 000962 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1208)
Q Consensus 638 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1208)
+|++|++++|. +..+|. +..+++|++|++++|... .. +..+..+++|++|++.+
T Consensus 111 ~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~--~~-~~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 111 NLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNL--SD-LSPLSNMTGLNYLTVTE 164 (347)
T ss_dssp TCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTC--CC-CGGGTTCTTCCEEECCS
T ss_pred cCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCc--cc-ccchhhCCCCcEEEecC
Confidence 99999999988 455654 888999999999888432 22 23355666666665543
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=8.8e-22 Score=235.53 Aligned_cols=98 Identities=27% Similarity=0.386 Sum_probs=61.5
Q ss_pred cEEecCCCCCcccccccccCCcccEEeecCCCcccc-chhhccCCcccEEecCCCccccccchhcccccccceeeccccc
Q 000962 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMF 672 (1208)
Q Consensus 594 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~ 672 (1208)
+.++.+++.++.+|..+. .+|++|+|++|.++.+ |..|.++++|++|+|++|.+....|..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456666666666666553 4677777777777765 3467777777777777776555556667777777777777764
Q ss_pred ccccccCCcc-CCCCCcCcCCCceE
Q 000962 673 WFKCSTLPAG-IGKLTNLHNLHVFR 696 (1208)
Q Consensus 673 ~~~~~~lp~~-i~~l~~L~~L~l~~ 696 (1208)
+ ..+|.. ++++++|++|++.+
T Consensus 92 l---~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 92 L---KLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp C---CSCCTTSSTTCTTCCEEECTT
T ss_pred C---CccCcccccCCCCCCEEECCC
Confidence 4 334432 45566666665543
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.9e-22 Score=244.66 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=72.5
Q ss_pred CCcccEEecCCCCCcccccc-cccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceee
Q 000962 590 LKYLRLLDLSSSTLTVLPDS-VEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1208)
Q Consensus 590 l~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 667 (1208)
+.++++|++++|.+..+|.. +.++++|++|+|++|.+..+|. .|+++++|++|+|++|.+.+..|..++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56778888888888777765 5677888888888888876654 778888888888888775555555667888888888
Q ss_pred cccccccccccCCccC-CCCCcCcCCCce
Q 000962 668 LEEMFWFKCSTLPAGI-GKLTNLHNLHVF 695 (1208)
Q Consensus 668 l~~n~~~~~~~lp~~i-~~l~~L~~L~l~ 695 (1208)
+++|.+ ..+|..+ +++++|++|++.
T Consensus 130 L~~n~l---~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 130 LERNDL---SSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSSCC---CCCCTTTTTTCTTCCEEECC
T ss_pred eeCCCC---CCCCHHHhccCCCCCEEEee
Confidence 887754 3445442 555555555544
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.8e-22 Score=247.71 Aligned_cols=215 Identities=16% Similarity=0.094 Sum_probs=154.6
Q ss_pred CCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccc-cccccCCcccEEeecCCCccccch-hhccCC
Q 000962 560 NSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLPN-SICNLY 637 (1208)
Q Consensus 560 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~ 637 (1208)
.+++++.+.+. .+.+..+++..|..+++|++|+|++|.++.+| ..|+.+++|++|+|++|.+..+|. .|++++
T Consensus 49 ~l~~l~~l~l~-----~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEES-----SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEee-----CCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 45778888876 45666777888999999999999999999765 489999999999999999998866 579999
Q ss_pred cccEEecCCCccccccchh-cccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCC
Q 000962 638 NLQTLKLIGCIWIMELPKD-LANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTG 716 (1208)
Q Consensus 638 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 716 (1208)
+|++|+|++|. +..+|.. +.++++|++|++++|.+.. ..|..++.+++|++|++.++.. .+.
T Consensus 124 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l-~~~------------- 186 (597)
T 3oja_B 124 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRL-THV------------- 186 (597)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECTTSCC-SBC-------------
T ss_pred CCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCcEEECcCCCC-CCc-------------
Confidence 99999999998 4566665 5899999999999997752 3455688999999998866421 111
Q ss_pred ceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCccccc
Q 000962 717 KLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRD 796 (1208)
Q Consensus 717 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 796 (1208)
.+..+++|+.|++++|... .+..+++|+.|+++++....+|..+
T Consensus 187 ----------------~~~~l~~L~~L~l~~n~l~------------------~l~~~~~L~~L~ls~n~l~~~~~~~-- 230 (597)
T 3oja_B 187 ----------------DLSLIPSLFHANVSYNLLS------------------TLAIPIAVEELDASHNSINVVRGPV-- 230 (597)
T ss_dssp ----------------CGGGCTTCSEEECCSSCCS------------------EEECCTTCSEEECCSSCCCEEECSC--
T ss_pred ----------------ChhhhhhhhhhhcccCccc------------------cccCCchhheeeccCCccccccccc--
Confidence 1233456666776665432 2333456777777766555555433
Q ss_pred CCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCCC
Q 000962 797 GRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLE 834 (1208)
Q Consensus 797 ~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~ 834 (1208)
.++|+.|+|++|.+.+...++.+++|++|+|++|..
T Consensus 231 --~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 231 --NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp --CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred --CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCcc
Confidence 356666666666665544555666666666666543
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=8.6e-21 Score=226.90 Aligned_cols=307 Identities=18% Similarity=0.138 Sum_probs=207.0
Q ss_pred EEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccEEe
Q 000962 542 HVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLD 620 (1208)
Q Consensus 542 ~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~ 620 (1208)
.+......+..++.. -.+.++.|.+. .+.+..+.+..|.++++|++|+|++|.++.+ |..|+++++|++|+
T Consensus 15 ~v~c~~~~l~~ip~~---~~~~l~~L~L~-----~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG---IPTETRLLDLG-----KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp EEECCSCCCSSCCSC---CCTTCSEEECC-----SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EEEeCCCCcCcCCCC---CCCCCcEEECC-----CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 344444444444432 23577888776 4555556666788888899999998888855 77788889999999
Q ss_pred ecCCCccccchh-hccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecc
Q 000962 621 LSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGS 699 (1208)
Q Consensus 621 L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 699 (1208)
|++|.++.+|.. |.++++|++|++++|.+....|..+.++++|++|++++|.+..+ .|..++.+++|++|++.++ .
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~ 163 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI--SHRAFSGLNSLEQLTLEKC-N 163 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE--CTTSSTTCTTCCEEEEESC-C
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee--ChhhccCCCCCCEEECCCC-c
Confidence 999888888764 78888999999988887666777888888999999988866532 3567788888888888764 3
Q ss_pred cCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcE
Q 000962 700 KSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEE 779 (1208)
Q Consensus 700 ~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 779 (1208)
........+..+++|+ .|.+..... .......+..+++|+.|+++.+......+ .......+|+.
T Consensus 164 l~~~~~~~l~~l~~L~-~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~ 228 (477)
T 2id5_A 164 LTSIPTEALSHLHGLI-VLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMT-------------PNCLYGLNLTS 228 (477)
T ss_dssp CSSCCHHHHTTCTTCC-EEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEEC-------------TTTTTTCCCSE
T ss_pred CcccChhHhcccCCCc-EEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccC-------------cccccCccccE
Confidence 3444455566666666 444433211 12223356677788888888765432221 12223347888
Q ss_pred EEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecC-CCCCCccccccccCCCC
Q 000962 780 LQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP-NDEDCRFLGRLKISNCP 856 (1208)
Q Consensus 780 L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 856 (1208)
|+++++....+|.... ..+++|+.|+|++|.+.... .+..+++|++|+|++|......+ .+.+++.|+.|++++|.
T Consensus 229 L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 229 LSITHCNLTAVPYLAV-RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EEEESSCCCSCCHHHH-TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred EECcCCcccccCHHHh-cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 8888777777775322 56788888888888776655 57778888888888887665544 45667778888888775
Q ss_pred CCCccCc---cCCCcCEEEEec
Q 000962 857 RLNELPE---CMPNLTVMKIKK 875 (1208)
Q Consensus 857 ~l~~~~~---~~~~L~~L~l~~ 875 (1208)
.....+. .+++|+.|++.+
T Consensus 308 l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 308 LTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CSCCCGGGBSCGGGCCEEECCS
T ss_pred CceeCHhHcCCCcccCEEEccC
Confidence 4432222 234555555554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.2e-19 Score=205.41 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=72.6
Q ss_pred cccEEecCCCCCcccccccccCCcccEEeecCCCccccc-hhhccCCcccEEecCCCccccccchhcccccccceeeccc
Q 000962 592 YLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEE 670 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 670 (1208)
.|++++++++.++.+|..+. ++|++|+|++|.+..+| ..|.++++|++|++++|.+....|..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 68999999999999998774 68999999999999875 4799999999999999986666688899999999999998
Q ss_pred ccccccccCCccC
Q 000962 671 MFWFKCSTLPAGI 683 (1208)
Q Consensus 671 n~~~~~~~lp~~i 683 (1208)
|.+ ..+|..+
T Consensus 112 n~l---~~l~~~~ 121 (332)
T 2ft3_A 112 NHL---VEIPPNL 121 (332)
T ss_dssp SCC---CSCCSSC
T ss_pred CcC---CccCccc
Confidence 854 3445433
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.4e-19 Score=204.83 Aligned_cols=97 Identities=31% Similarity=0.345 Sum_probs=77.4
Q ss_pred CcccEEecCCCCCcccccccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceeecc
Q 000962 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 669 (1208)
..|++++++++.++.+|..+. ++|++|+|++|.++.+|. .|+++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 368999999999999998765 689999999999998876 79999999999999998666668889999999999999
Q ss_pred cccccccccCCccCCCCCcCcCCCc
Q 000962 670 EMFWFKCSTLPAGIGKLTNLHNLHV 694 (1208)
Q Consensus 670 ~n~~~~~~~lp~~i~~l~~L~~L~l 694 (1208)
+|.+ ..+|..+. ++|++|++
T Consensus 109 ~n~l---~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 109 KNQL---KELPEKMP--KTLQELRV 128 (330)
T ss_dssp SSCC---SBCCSSCC--TTCCEEEC
T ss_pred CCcC---CccChhhc--ccccEEEC
Confidence 8855 34554432 34444433
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.3e-20 Score=212.02 Aligned_cols=225 Identities=25% Similarity=0.342 Sum_probs=176.3
Q ss_pred cCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
....+++|+|++|.++.+|..++++++|++|+|++|.+..+|..++++++|++|++++|.+ ..+|..+.++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEEC
Confidence 3588999999999999999999999999999999999999999999999999999999985 489999999999999999
Q ss_pred ccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeec
Q 000962 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1208)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 748 (1208)
++|... +.+|..++... + ...+..+++|+.|++++|
T Consensus 158 ~~n~~~--~~~p~~~~~~~------~------------------------------------~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 158 RACPEL--TELPEPLASTD------A------------------------------------SGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp EEETTC--CCCCSCSEEEC-------------------------------------------CCCEEESTTCCEEEEEEE
T ss_pred CCCCCc--cccChhHhhcc------c------------------------------------hhhhccCCCCCEEECcCC
Confidence 998543 55666543300 0 011334456677777776
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccE
Q 000962 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRV 826 (1208)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~ 826 (1208)
... .. +..+..+++|+.|++++|....+|..+ ..+++|+.|+|++|.+.+.. .++.+++|++
T Consensus 194 ~l~-~l-------------p~~l~~l~~L~~L~L~~N~l~~l~~~l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 194 GIR-SL-------------PASIANLQNLKSLKIRNSPLSALGPAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp CCC-CC-------------CGGGGGCTTCCEEEEESSCCCCCCGGG--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CcC-cc-------------hHhhcCCCCCCEEEccCCCCCcCchhh--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 554 11 134566778888888877777788776 56889999999998887766 6788899999
Q ss_pred EEEeCCCCceecC-CCCCCccccccccCCCCCCCccCccCCCcCEEEEe
Q 000962 827 LNIKGMLELEKWP-NDEDCRFLGRLKISNCPRLNELPECMPNLTVMKIK 874 (1208)
Q Consensus 827 L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 874 (1208)
|+|++|...+.++ .+..++.|+.|++++|+.++.+|..+.+|..|...
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 9999888777766 45778888888899888888888866555544433
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=8.7e-21 Score=212.12 Aligned_cols=231 Identities=17% Similarity=0.192 Sum_probs=148.8
Q ss_pred HHhccCCcccEEecCC-CCCc-ccccccccCCcccEEeecCCCcc-ccchhhccCCcccEEecCCCccccccchhccccc
Q 000962 585 KIFHQLKYLRLLDLSS-STLT-VLPDSVEELKLLRYLDLSRTEIK-VLPNSICNLYNLQTLKLIGCIWIMELPKDLANLV 661 (1208)
Q Consensus 585 ~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 661 (1208)
..|.++++|++|+|++ |.+. .+|..|+++++|++|+|++|.+. .+|..++++++|++|++++|.+.+.+|..+..++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 3456666777777763 5555 56666777777777777777666 5666677777777777777665556666666777
Q ss_pred ccceeecccccccccccCCccCCCCC-cCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCc
Q 000962 662 KLRNLELEEMFWFKCSTLPAGIGKLT-NLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESL 740 (1208)
Q Consensus 662 ~L~~L~l~~n~~~~~~~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L 740 (1208)
+|++|++++|.+. +.+|..++.++ +|+.|++.++.. .+..+. .+..+. |
T Consensus 150 ~L~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N~l-~~~~~~--------------------------~~~~l~-L 199 (313)
T 1ogq_A 150 NLVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRNRL-TGKIPP--------------------------TFANLN-L 199 (313)
T ss_dssp TCCEEECCSSCCE--EECCGGGGCCCTTCCEEECCSSEE-EEECCG--------------------------GGGGCC-C
T ss_pred CCCeEECcCCccc--CcCCHHHhhhhhcCcEEECcCCee-eccCCh--------------------------HHhCCc-c
Confidence 7777777766553 34566666665 666666654311 111111 122222 5
Q ss_pred ceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--cc
Q 000962 741 HKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SL 818 (1208)
Q Consensus 741 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l 818 (1208)
+.|+++.|..... .+..+..+++|+.|+++++.....+..+ ..+++|++|+|++|.+.+.. .+
T Consensus 200 ~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 200 AFVDLSRNMLEGD-------------ASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp SEEECCSSEEEEC-------------CGGGCCTTSCCSEEECCSSEECCBGGGC--CCCTTCCEEECCSSCCEECCCGGG
T ss_pred cEEECcCCcccCc-------------CCHHHhcCCCCCEEECCCCceeeecCcc--cccCCCCEEECcCCcccCcCChHH
Confidence 5566655533211 1234566777888888755444333334 55788899999988887544 67
Q ss_pred CCCCCccEEEEeCCCCceecCCCCCCccccccccCCCCCCCc
Q 000962 819 GQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNE 860 (1208)
Q Consensus 819 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 860 (1208)
+.+++|++|+|++|...+.+|....++.|+.+++++|+.+..
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 888999999999988777788777788888888888875443
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=2e-21 Score=239.89 Aligned_cols=232 Identities=15% Similarity=0.079 Sum_probs=143.6
Q ss_pred hHHHHhccCCcccEEecCCCCCc-ccccccccC--CcccEEeecCCC-cc--ccchhhccCCcccEEecCCCccccc---
Q 000962 582 ALDKIFHQLKYLRLLDLSSSTLT-VLPDSVEEL--KLLRYLDLSRTE-IK--VLPNSICNLYNLQTLKLIGCIWIME--- 652 (1208)
Q Consensus 582 ~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l--~~Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~~~~--- 652 (1208)
.+...+..+++|++|+|++|.++ ..+..+..+ .+|++|+|++|. +. .++..+.++++|++|+|++|.+.+.
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH
T ss_pred HHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh
Confidence 34455668889999999998776 344455553 449999998885 22 3455556889999999998875433
Q ss_pred -cchhcccccccceeecccccccc--cccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccc
Q 000962 653 -LPKDLANLVKLRNLELEEMFWFK--CSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNG 729 (1208)
Q Consensus 653 -lp~~i~~L~~L~~L~l~~n~~~~--~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~ 729 (1208)
++..+..+++|++|++++|.+.. ...++..+.++++|++|++.++.... .+
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~------------------------ 236 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LV------------------------ 236 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GH------------------------
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HH------------------------
Confidence 44445678889999998886641 12344445667777777776532111 11
Q ss_pred cccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeC
Q 000962 730 GEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKG 809 (1208)
Q Consensus 730 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~ 809 (1208)
..+..+++|+.|.++........ ......+..+++|+.|.+++.....+|..+ ..+++|++|+|++
T Consensus 237 --~~~~~~~~L~~L~l~~~~~~~~~----------~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~--~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 237 --GFFKAAANLEEFCGGSLNEDIGM----------PEKYMNLVFPRKLCRLGLSYMGPNEMPILF--PFAAQIRKLDLLY 302 (592)
T ss_dssp --HHHHHCTTCCEEEECBCCCCTTC----------TTSSSCCCCCTTCCEEEETTCCTTTGGGGG--GGGGGCCEEEETT
T ss_pred --HHHhhhhHHHhhcccccccccch----------HHHHHHhhccccccccCccccchhHHHHHH--hhcCCCcEEecCC
Confidence 22334456666666542211000 011234566778888888876666777766 5688899999998
Q ss_pred cCCCCcc---ccCCCCCccEEEEeCCCCceecCCC-CCCccccccccC
Q 000962 810 CTNCRIL---SLGQLSSLRVLNIKGMLELEKWPND-EDCRFLGRLKIS 853 (1208)
Q Consensus 810 ~~~~~~~---~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~l~ 853 (1208)
|.+.... .+..+++|++|+++++.....++.+ ..++.|+.|+++
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 8854333 3578899999998843221111111 234455566555
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2e-20 Score=209.09 Aligned_cols=244 Identities=19% Similarity=0.204 Sum_probs=178.1
Q ss_pred CcccEEecCCCCCc---ccccccccCCcccEEeecC-CCcc-ccchhhccCCcccEEecCCCccccccchhcccccccce
Q 000962 591 KYLRLLDLSSSTLT---VLPDSVEELKLLRYLDLSR-TEIK-VLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 665 (1208)
.++++|+|++|.+. .+|..|+++++|++|+|++ |.+. .+|..|+++++|++|++++|.+.+.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57899999999998 6899999999999999995 8887 78999999999999999999977899999999999999
Q ss_pred eecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCccc-CcceEE
Q 000962 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKE-SLHKLV 744 (1208)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~ 744 (1208)
|++++|.+. +.+|..++.+++|++|++.++. ..+..+.. +..+. .|+.|+
T Consensus 130 L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~--------------------------l~~l~~~L~~L~ 180 (313)
T 1ogq_A 130 LDFSYNALS--GTLPPSISSLPNLVGITFDGNR-ISGAIPDS--------------------------YGSFSKLFTSMT 180 (313)
T ss_dssp EECCSSEEE--SCCCGGGGGCTTCCEEECCSSC-CEEECCGG--------------------------GGCCCTTCCEEE
T ss_pred EeCCCCccC--CcCChHHhcCCCCCeEECcCCc-ccCcCCHH--------------------------HhhhhhcCcEEE
Confidence 999999775 4688899999999999998742 22122222 23333 677777
Q ss_pred eeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCC-CCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCC
Q 000962 745 FEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFG-NSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLS 822 (1208)
Q Consensus 745 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~ 822 (1208)
++.|......+ ..+..+. |+.|+++++.. ...|..+ ..+++|+.|+|++|.+.... .+..++
T Consensus 181 L~~N~l~~~~~-------------~~~~~l~-L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~l~ 244 (313)
T 1ogq_A 181 ISRNRLTGKIP-------------PTFANLN-LAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGKVGLSK 244 (313)
T ss_dssp CCSSEEEEECC-------------GGGGGCC-CSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred CcCCeeeccCC-------------hHHhCCc-ccEEECcCCcccCcCCHHH--hcCCCCCEEECCCCceeeecCcccccC
Confidence 77664432222 2333344 88888885443 3455555 56788888888888777655 667778
Q ss_pred CccEEEEeCCCCceecC-CCCCCccccccccCCCCCCCccCc--cCCCcCEEEEeccccc
Q 000962 823 SLRVLNIKGMLELEKWP-NDEDCRFLGRLKISNCPRLNELPE--CMPNLTVMKIKKCCSL 879 (1208)
Q Consensus 823 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~~l 879 (1208)
+|++|+|++|...+.++ .+..++.|+.|++++|+..+.+|. .+++|+.|++.+++.+
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 88888888887664444 345667777777777766656654 2344444444444433
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=4.7e-19 Score=200.44 Aligned_cols=281 Identities=16% Similarity=0.137 Sum_probs=170.5
Q ss_pred eeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccE
Q 000962 540 TRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRY 618 (1208)
Q Consensus 540 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~ 618 (1208)
.+.+.+..+.+..++.. -.+.++.|.+. .+.+..+.+..|.++++|++|+|++|.++.+ |..|+++++|++
T Consensus 33 l~~l~~~~~~l~~lp~~---~~~~l~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKD---LPPDTALLDLQ-----NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp TTEEECTTSCCCSCCCS---CCTTCCEEECC-----SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CeEEEecCCCccccCcc---CCCCCeEEECC-----CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 44555555555554421 23567777776 4445555555677888888888888888865 777888888888
Q ss_pred EeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEec
Q 000962 619 LDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG 698 (1208)
Q Consensus 619 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~ 698 (1208)
|+|++|.++.+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+...+..|..+..+++|+.|++.++.
T Consensus 105 L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 105 LYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp EECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 8888888888877665 68888888888755544556778888888888888765444556667777888877776532
Q ss_pred ccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCc
Q 000962 699 SKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLE 778 (1208)
Q Consensus 699 ~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 778 (1208)
... ++ ..+ .++|+.|++++|...... +..+..+++|+
T Consensus 183 l~~---------l~-------------------~~~--~~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~ 219 (330)
T 1xku_A 183 ITT---------IP-------------------QGL--PPSLTELHLDGNKITKVD-------------AASLKGLNNLA 219 (330)
T ss_dssp CCS---------CC-------------------SSC--CTTCSEEECTTSCCCEEC-------------TGGGTTCTTCC
T ss_pred ccc---------CC-------------------ccc--cccCCEEECCCCcCCccC-------------HHHhcCCCCCC
Confidence 110 00 000 145666666665443211 13455566677
Q ss_pred EEEEeeeCCCCCCc-ccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCceecCCC-------CCCccccc
Q 000962 779 ELQIFNYFGNSLPQ-WMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPND-------EDCRFLGR 849 (1208)
Q Consensus 779 ~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~-------~~~~~L~~ 849 (1208)
.|+++++....++. ++ ..+++|+.|+|++|.+.... .+..+++|++|++++|......+.. .....+..
T Consensus 220 ~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~ 297 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSL--ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297 (330)
T ss_dssp EEECCSSCCCEECTTTG--GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred EEECCCCcCceeChhhc--cCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccc
Confidence 77776555544443 34 44667777777777666544 5666777777777776544332211 11245566
Q ss_pred cccCCCCCCC--ccCc---cCCCcCEEEEec
Q 000962 850 LKISNCPRLN--ELPE---CMPNLTVMKIKK 875 (1208)
Q Consensus 850 L~l~~~~~l~--~~~~---~~~~L~~L~l~~ 875 (1208)
+++++|+... ..|. .+.+++.+++.+
T Consensus 298 l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp EECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred eEeecCcccccccCccccccccceeEEEecc
Confidence 6677776432 1122 344455555544
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=8.4e-19 Score=198.40 Aligned_cols=282 Identities=17% Similarity=0.165 Sum_probs=176.3
Q ss_pred ceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCccc
Q 000962 539 ETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLR 617 (1208)
Q Consensus 539 ~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr 617 (1208)
..+.+.+..+.+..++... .++++.|.+. .+.+..+.+..|.++++|++|+|++|.++.+ |..|+++++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQ-----NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECC-----SSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECC-----CCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 3566666666666655322 3678888886 4455555566788889999999999988865 77788899999
Q ss_pred EEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEe
Q 000962 618 YLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 618 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
+|+|++|.++.+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+...+..|..+..+ +|+.|++.++
T Consensus 106 ~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 99999998888888766 78999999988854433445788899999999988775444556667777 8888887664
Q ss_pred cccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCC
Q 000962 698 GSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNL 777 (1208)
Q Consensus 698 ~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 777 (1208)
.. .. ++ ..+ .++|+.|++++|......+ ..+..+++|
T Consensus 183 ~l-~~--------l~-------------------~~~--~~~L~~L~l~~n~i~~~~~-------------~~l~~l~~L 219 (332)
T 2ft3_A 183 KL-TG--------IP-------------------KDL--PETLNELHLDHNKIQAIEL-------------EDLLRYSKL 219 (332)
T ss_dssp BC-SS--------CC-------------------SSS--CSSCSCCBCCSSCCCCCCT-------------TSSTTCTTC
T ss_pred CC-Cc--------cC-------------------ccc--cCCCCEEECCCCcCCccCH-------------HHhcCCCCC
Confidence 21 11 00 000 1355566666554432221 234555666
Q ss_pred cEEEEeeeCCCCCCc-ccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCceecCC-CCC------Ccccc
Q 000962 778 EELQIFNYFGNSLPQ-WMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPN-DED------CRFLG 848 (1208)
Q Consensus 778 ~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~-~~~------~~~L~ 848 (1208)
+.|+++++....++. ++ ..+++|+.|+|++|.+.... .++.+++|++|++++|......+. +.. ...++
T Consensus 220 ~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 220 YRLGLGHNQIRMIENGSL--SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp SCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS
T ss_pred CEEECCCCcCCcCChhHh--hCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccccccccccc
Confidence 666666555544443 34 44666777777777666444 466667777777776654433221 111 24456
Q ss_pred ccccCCCCCC--CccCc---cCCCcCEEEEecc
Q 000962 849 RLKISNCPRL--NELPE---CMPNLTVMKIKKC 876 (1208)
Q Consensus 849 ~L~l~~~~~l--~~~~~---~~~~L~~L~l~~c 876 (1208)
.+++++|+.. ...|. .+++|+.+.+.++
T Consensus 298 ~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6667776644 22222 3445555555543
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=5.1e-21 Score=236.19 Aligned_cols=212 Identities=18% Similarity=0.128 Sum_probs=118.1
Q ss_pred HHHHhccCCcccEEecCCCCC----cccccccc------------cCCcccEEeecCCCcc-ccchhhccC--CcccEEe
Q 000962 583 LDKIFHQLKYLRLLDLSSSTL----TVLPDSVE------------ELKLLRYLDLSRTEIK-VLPNSICNL--YNLQTLK 643 (1208)
Q Consensus 583 ~~~~~~~l~~Lr~L~L~~~~i----~~lp~~i~------------~l~~Lr~L~L~~~~i~-~lp~~i~~L--~~L~~L~ 643 (1208)
++..+..+++|+.|+|+++.. ..+|..++ .+++|++|+|++|.+. ..+..+..+ .+|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 455677888899999987532 12333322 7889999999999877 345556653 4599999
Q ss_pred cCCCcccc--ccchhcccccccceeeccccccccccc--CCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCcee
Q 000962 644 LIGCIWIM--ELPKDLANLVKLRNLELEEMFWFKCST--LPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLH 719 (1208)
Q Consensus 644 L~~~~~~~--~lp~~i~~L~~L~~L~l~~n~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~ 719 (1208)
+++|.... .++..+..+++|++|++++|.+...+. ++.....+++|++|++.++.. .+...
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~-------------- 209 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISP-------------- 209 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC-SSCCH--------------
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC-CccCH--------------
Confidence 99886321 233344578999999999986542210 222334556666666644211 10000
Q ss_pred eCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCC----CCCcccc
Q 000962 720 ISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGN----SLPQWMR 795 (1208)
Q Consensus 720 l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~p~~~~ 795 (1208)
......+..+++|+.|+++.+... .+...+..+++|+.|.++++... ..+..+
T Consensus 210 --------~~l~~~~~~~~~L~~L~L~~~~~~--------------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l- 266 (592)
T 3ogk_B 210 --------KDLETIARNCRSLVSVKVGDFEIL--------------ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL- 266 (592)
T ss_dssp --------HHHHHHHHHCTTCCEEECSSCBGG--------------GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC-
T ss_pred --------HHHHHHHhhCCCCcEEeccCccHH--------------HHHHHHhhhhHHHhhcccccccccchHHHHHHh-
Confidence 111112334456666666654221 12233444567777777643221 122223
Q ss_pred cCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCC
Q 000962 796 DGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGML 833 (1208)
Q Consensus 796 ~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~ 833 (1208)
..+++|+.|+++++...... .+..+++|++|+|++|.
T Consensus 267 -~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 267 -VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp -CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred -hccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 34566666666654332222 44556666666666654
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=3.7e-18 Score=206.37 Aligned_cols=93 Identities=26% Similarity=0.280 Sum_probs=74.7
Q ss_pred ccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceee
Q 000962 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 667 (1208)
+....+++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++|+
T Consensus 37 c~~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 37 CLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELS 107 (622)
T ss_dssp HHHHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEE
T ss_pred ccCCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEE
Confidence 334569999999999999998876 899999999999999988 67899999999998 567886 778999999
Q ss_pred cccccccccccCCccCCCCCcCcCCCce
Q 000962 668 LEEMFWFKCSTLPAGIGKLTNLHNLHVF 695 (1208)
Q Consensus 668 l~~n~~~~~~~lp~~i~~l~~L~~L~l~ 695 (1208)
+++|.+. .+|. .+++|++|++.
T Consensus 108 Ls~N~l~---~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 108 IFSNPLT---HLPA---LPSGLCKLWIF 129 (622)
T ss_dssp ECSCCCC---CCCC---CCTTCCEEECC
T ss_pred CcCCcCC---CCCC---CCCCcCEEECC
Confidence 9998553 3444 34455555543
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=1.7e-18 Score=194.54 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCc
Q 000962 774 HPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLEL 835 (1208)
Q Consensus 774 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~ 835 (1208)
.++++.|+++++....+|..+ ..+++|++|+|++|.+.... .++.+++|++|+|++|...
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l--~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQA--FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR 140 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCG--GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC
T ss_pred ccceeEEEccCCCchhcChhh--hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc
Confidence 468889999887777888877 45888888888888877444 6788888888888887543
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2.7e-20 Score=221.87 Aligned_cols=258 Identities=16% Similarity=0.125 Sum_probs=130.6
Q ss_pred CceeEEEEEcccCCCCccc-cccCCCCceEEecccCCCccchhh----hhHHHHhccCCcccEEecCCCCCcc-cccc-c
Q 000962 538 PETRHVSLLCKHVEKPALS-VVENSKKLRTFLVPSFGEHLKDFG----RALDKIFHQLKYLRLLDLSSSTLTV-LPDS-V 610 (1208)
Q Consensus 538 ~~~r~lsl~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~----~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~-i 610 (1208)
+..+++.+.++.+...... .+..+++|++|.+. .+.+. ..++..+..+++|++|+|++|.+.. .+.. .
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-----~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-----DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-----SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEcc-----CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 4556677766665443322 24566677777765 22222 2345556666777777777776652 2222 2
Q ss_pred ccCC----cccEEeecCCCcc-----ccchhhccCCcccEEecCCCccccccchhcc-----cccccceeeccccccccc
Q 000962 611 EELK----LLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGCIWIMELPKDLA-----NLVKLRNLELEEMFWFKC 676 (1208)
Q Consensus 611 ~~l~----~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~-----~L~~L~~L~l~~n~~~~~ 676 (1208)
..+. +|++|+|++|.+. .+|..+.++++|++|++++|.+....+..+. ..++|++|++++|.+...
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 2333 5777777777666 3466677777777777777764333232222 244677777777655422
Q ss_pred c--cCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCcccccccccccc-CcccCcceEEeeecCCCCC
Q 000962 677 S--TLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKL-SEKESLHKLVFEWSNNRDS 753 (1208)
Q Consensus 677 ~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~ 753 (1208)
. .++..+..+++|++|++.++. .....+..+. ..+ ...++|+.|++++|....
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~----------------------~~l~~~~~~L~~L~L~~n~l~~- 213 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNND-INEAGVRVLC----------------------QGLKDSPCQLEALKLESCGVTS- 213 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHH----------------------HHHHHSCCCCCEEECTTSCCBT-
T ss_pred HHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHH----------------------HHHhcCCCCceEEEccCCCCcH-
Confidence 1 233444455666666655432 1111011000 000 112356666666654321
Q ss_pred CCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCC-----CcccccCCCCceeEEEEeCcCCCCc-----c-ccCCCC
Q 000962 754 SPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSL-----PQWMRDGRLQNLVSLTLKGCTNCRI-----L-SLGQLS 822 (1208)
Q Consensus 754 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~~-----~-~l~~l~ 822 (1208)
.....+...+..+++|+.|+++++..... ...+. ..+++|+.|++++|.+... . .+..++
T Consensus 214 --------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 214 --------DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL-HPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp --------THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred --------HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh-cCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 01122334444556666666665433221 01111 2356666666666655542 1 344566
Q ss_pred CccEEEEeCCC
Q 000962 823 SLRVLNIKGML 833 (1208)
Q Consensus 823 ~L~~L~L~~~~ 833 (1208)
+|++|+|++|.
T Consensus 285 ~L~~L~Ls~n~ 295 (461)
T 1z7x_W 285 SLKELSLAGNE 295 (461)
T ss_dssp TCCEEECTTCC
T ss_pred CcceEECCCCC
Confidence 66666666664
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.2e-16 Score=193.12 Aligned_cols=116 Identities=28% Similarity=0.305 Sum_probs=53.6
Q ss_pred ccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEe
Q 000962 969 SQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLS 1048 (1208)
Q Consensus 969 ~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~ 1048 (1208)
+++|+.|++++|.....+.. +++|+.|++++|.+. .+|. .+++|+.|++++|. ++.+| ..+++|+.|+
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~-L~~lp-----~~l~~L~~L~ 247 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNR-LTSLP-----VLPSELKELM 247 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSC-CSCCC-----CCCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC--CCCCCCEEEccCCc-cCcCC-----CCCCcCcEEE
Confidence 34555555555543333221 245555555555332 2332 23445555555553 33333 2334555555
Q ss_pred ecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCC
Q 000962 1049 IRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCP 1102 (1208)
Q Consensus 1049 l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~ 1102 (1208)
+++| .++.+|. .+++|+.|++++|. ++.+|. .+.++++|+.|++++|+
T Consensus 248 Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 248 VSGN-RLTSLPM--LPSGLLSLSVYRNQ-LTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSS-CCSCCCC--CCTTCCEEECCSSC-CCSCCG--GGGGSCTTCEEECCSCC
T ss_pred CCCC-CCCcCCc--ccccCcEEeCCCCC-CCcCCH--HHhhccccCEEEecCCC
Confidence 5555 3444443 33455555555543 334444 45555555555555554
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=3.3e-21 Score=229.81 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=73.8
Q ss_pred CCceEEecccCCCccchhhhh-HHHHhccCCcccEEecCCCCCc-----ccccccccCCcccEEeecCCCcccc-chhh-
Q 000962 562 KKLRTFLVPSFGEHLKDFGRA-LDKIFHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIKVL-PNSI- 633 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i- 633 (1208)
+.|+.|.+. .+.+... ....+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+... +..+
T Consensus 3 ~~l~~L~Ls-----~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQ-----CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEE-----SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhh-----hcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 456777776 2333222 3445777888888888888877 4567777788888888888887642 3233
Q ss_pred ccCC----cccEEecCCCcccc----ccchhcccccccceeeccccccc
Q 000962 634 CNLY----NLQTLKLIGCIWIM----ELPKDLANLVKLRNLELEEMFWF 674 (1208)
Q Consensus 634 ~~L~----~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~n~~~ 674 (1208)
..+. +|++|++++|.+.. .+|..+..+++|++|++++|.+.
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 3344 68888888887542 56777788888888888887653
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=2.3e-19 Score=221.54 Aligned_cols=240 Identities=17% Similarity=0.055 Sum_probs=133.3
Q ss_pred cccCCCCceEEecccCCCc----------cchhhhhHHHHhccCCcccEEecCCCCCc-ccccccc-cCCcccEEeecCC
Q 000962 557 VVENSKKLRTFLVPSFGEH----------LKDFGRALDKIFHQLKYLRLLDLSSSTLT-VLPDSVE-ELKLLRYLDLSRT 624 (1208)
Q Consensus 557 ~~~~~~~Lr~L~l~~~~~~----------~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~l~~Lr~L~L~~~ 624 (1208)
.+..+++|+.|.+...... .......+...+..+++|+.|+|++|.++ ..+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3556777888877621000 00111223445567778888888887766 3334443 5778888888877
Q ss_pred -Cccc--cchhhccCCcccEEecCCCccccccchh----cccccccceeeccccc-ccccccCCccCCCCCcCcCCCceE
Q 000962 625 -EIKV--LPNSICNLYNLQTLKLIGCIWIMELPKD----LANLVKLRNLELEEMF-WFKCSTLPAGIGKLTNLHNLHVFR 696 (1208)
Q Consensus 625 -~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~n~-~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1208)
.+.. ++..+.++++|++|++++|.+....+.. ...+++|++|++++|. ......++..+.++++|++|++.+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 4553 5555667788888888877643322222 2356677788777763 000011112223356666666554
Q ss_pred ecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCC
Q 000962 697 VGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPN 776 (1208)
Q Consensus 697 ~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 776 (1208)
+....+ ....+..+++|+.|.+..+.... .......+...+..+++
T Consensus 221 ~~~~~~---------------------------l~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 221 AVPLEK---------------------------LATLLQRAPQLEELGTGGYTAEV-------RPDVYSGLSVALSGCKE 266 (594)
T ss_dssp TSCHHH---------------------------HHHHHHHCTTCSEEECSBCCCCC-------CHHHHHHHHHHHHTCTT
T ss_pred CCcHHH---------------------------HHHHHhcCCcceEcccccccCcc-------chhhHHHHHHHHhcCCC
Confidence 311111 12223344566666655442210 01123334456677788
Q ss_pred CcEE-EEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc---ccCCCCCccEEEEeCC
Q 000962 777 LEEL-QIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL---SLGQLSSLRVLNIKGM 832 (1208)
Q Consensus 777 L~~L-~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~---~l~~l~~L~~L~L~~~ 832 (1208)
|+.| .+.+.....+|..+ ..+++|+.|+|++|.+.... .+..+++|++|++++|
T Consensus 267 L~~Ls~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 267 LRCLSGFWDAVPAYLPAVY--SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCEEECCBTCCGGGGGGGH--HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cccccCCcccchhhHHHHH--HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 8887 33333333444443 35788999999888844332 3567888999988877
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=1e-17 Score=187.19 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=63.7
Q ss_pred CCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc---ccccccCCcccEEeecCCCccccchhhccCCc
Q 000962 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL---PDSVEELKLLRYLDLSRTEIKVLPNSICNLYN 638 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 638 (1208)
++++.|.+. .+.+..+++..|.++++|++|+|++|.++.+ |..+..+++|++|+|++|.+..+|..+.++++
T Consensus 28 ~~l~~L~L~-----~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECC-----SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred CCCCEEECC-----CCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCC
Confidence 345555554 2333333344455555555555555555533 34445555555555555555555555555555
Q ss_pred ccEEecCCCccccccc--hhcccccccceeecccccccccccCCccCCCCCcCcCCCce
Q 000962 639 LQTLKLIGCIWIMELP--KDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVF 695 (1208)
Q Consensus 639 L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~ 695 (1208)
|++|++++|.+ ..+| ..+..+++|++|++++|.+. ...|..++.+++|++|++.
T Consensus 103 L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 103 LEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCE--ECSTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCC--ccchhhcccCcCCCEEECC
Confidence 55555555542 2222 24555555555555555443 1233344445555555443
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=191.04 Aligned_cols=253 Identities=17% Similarity=0.143 Sum_probs=144.7
Q ss_pred CCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccEEeecCCCccccchh-hccCCcc
Q 000962 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPNS-ICNLYNL 639 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L 639 (1208)
++|+.|.+. .+.+..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. ++++++|
T Consensus 52 ~~L~~L~l~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLS-----NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccCcEEECC-----CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 355566554 3333344444556666666666666666644 34466666666666666666665554 5666666
Q ss_pred cEEecCCCccccccch--hcccccccceeecccccccccccC-CccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCC
Q 000962 640 QTLKLIGCIWIMELPK--DLANLVKLRNLELEEMFWFKCSTL-PAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTG 716 (1208)
Q Consensus 640 ~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~n~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 716 (1208)
++|++++|. +..+|. .+.++++|++|++++|.. +..+ |..++.+++|++|++.++ ...+..+..+..+++|+
T Consensus 127 ~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~- 201 (353)
T 2z80_A 127 TFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVS- 201 (353)
T ss_dssp SEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEE-
T ss_pred CEEECCCCC-CcccCchhhhccCCCCcEEECCCCcc--ccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCC-
Confidence 666666655 334444 455666666666666521 1222 344556666666666553 22333334444444444
Q ss_pred ceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCC-----CCC
Q 000962 717 KLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGN-----SLP 791 (1208)
Q Consensus 717 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p 791 (1208)
.+.+..... .......+..+++|+.|++++|......+. .+........++.+++.++... .+|
T Consensus 202 ~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 202 HLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS----------ELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp EEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred eecCCCCcc-ccchhhhhhhcccccEEECCCCcccccccc----------ccccccccchhhccccccccccCcchhhhH
Confidence 333322111 111112234467899999998866533221 0112334567888888855433 356
Q ss_pred cccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCcee
Q 000962 792 QWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEK 837 (1208)
Q Consensus 792 ~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~ 837 (1208)
.++ ..+++|+.|+|++|.+.... .++.+++|++|+|++|+....
T Consensus 271 ~~l--~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 271 KLL--NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHH--HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HHH--hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 666 56899999999999988665 368999999999999975543
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=189.53 Aligned_cols=242 Identities=17% Similarity=0.150 Sum_probs=157.4
Q ss_pred CcccEEecCCCCCccccc-ccccCCcccEEeecCCCccccc-hhhccCCcccEEecCCCccccccchh-cccccccceee
Q 000962 591 KYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKD-LANLVKLRNLE 667 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 667 (1208)
++|++|+|++|.++.+|. .|.++++|++|+|++|.++.++ ..|+++++|++|++++|.+ ..+|.. +.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEE
Confidence 589999999999998776 7999999999999999999774 5799999999999999984 456655 88999999999
Q ss_pred cccccccccccCCc--cCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEe
Q 000962 668 LEEMFWFKCSTLPA--GIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVF 745 (1208)
Q Consensus 668 l~~n~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L 745 (1208)
+++|.+ ..+|. .++.+++|++|++.+++......... +..+++|+.|++
T Consensus 131 L~~n~l---~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------------~~~l~~L~~L~l 181 (353)
T 2z80_A 131 LLGNPY---KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD--------------------------FAGLTFLEELEI 181 (353)
T ss_dssp CTTCCC---SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT--------------------------TTTCCEEEEEEE
T ss_pred CCCCCC---cccCchhhhccCCCCcEEECCCCccccccCHHH--------------------------ccCCCCCCEEEC
Confidence 999966 45665 67889999999998764333222222 334455666666
Q ss_pred eecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-----ccCC
Q 000962 746 EWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-----SLGQ 820 (1208)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-----~l~~ 820 (1208)
++|......+ ..+..+++|+.|+++++....+|..+. ..+++|+.|++++|.+.... ....
T Consensus 182 ~~n~l~~~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 182 DASDLQSYEP-------------KSLKSIQNVSHLILHMKQHILLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp EETTCCEECT-------------TTTTTCSEEEEEEEECSCSTTHHHHHH-HHTTTEEEEEEESCBCTTCCCC------C
T ss_pred CCCCcCccCH-------------HHHhccccCCeecCCCCccccchhhhh-hhcccccEEECCCCccccccccccccccc
Confidence 6664432211 334555666666666555555554432 23566666666666655432 1223
Q ss_pred CCCccEEEEeCCCCce-----ecCCCCCCccccccccCCCCCCCccCc----cCCCcCEEEEeccc
Q 000962 821 LSSLRVLNIKGMLELE-----KWPNDEDCRFLGRLKISNCPRLNELPE----CMPNLTVMKIKKCC 877 (1208)
Q Consensus 821 l~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~ 877 (1208)
.+.++.++++++.... .+..+..++.|+.|++++|... .+|. .+++|+.|++.+++
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 4555666666553221 0112234556666666666543 4443 34566666666654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=3.3e-18 Score=191.82 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=48.6
Q ss_pred chhhhhHHHHhccCCcccEEecCCCCCcccc-cccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccch
Q 000962 577 KDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPK 655 (1208)
Q Consensus 577 ~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 655 (1208)
+.+...+...+..+++|++|+|++|.++.++ ..|.++++|++|+|++|.+..++. +..+++|++|++++|. +..+|
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~- 96 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL- 96 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-
Confidence 3444555555555666666666666666443 456666666666666666655443 5556666666666554 22222
Q ss_pred hcccccccceeecccc
Q 000962 656 DLANLVKLRNLELEEM 671 (1208)
Q Consensus 656 ~i~~L~~L~~L~l~~n 671 (1208)
..++|++|++++|
T Consensus 97 ---~~~~L~~L~l~~n 109 (317)
T 3o53_A 97 ---VGPSIETLHAANN 109 (317)
T ss_dssp ---ECTTCCEEECCSS
T ss_pred ---CCCCcCEEECCCC
Confidence 2245555555544
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=1.1e-17 Score=184.79 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=43.6
Q ss_pred cCCCCCCcEEEEeeeCCCCC-CcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCc
Q 000962 771 LQPHPNLEELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLEL 835 (1208)
Q Consensus 771 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~ 835 (1208)
+..+++|+.|+++++....+ |.++ ..+++|+.|++++|.+.... .+..+++|++|+|++|+..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hcCccccCEEECCCCcccccCHhHc--cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 44556777777775544444 5555 55788888888888777665 4777888888888887644
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=4.5e-17 Score=181.99 Aligned_cols=203 Identities=20% Similarity=0.157 Sum_probs=119.5
Q ss_pred CcccEEecCCCCCcccccc-cccCCcccEEeecCCCcccc---chhhccCCcccEEecCCCccccccchhccccccccee
Q 000962 591 KYLRLLDLSSSTLTVLPDS-VEELKLLRYLDLSRTEIKVL---PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNL 666 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 666 (1208)
++|++|+|++|.++.+|.. |.++++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 5788888888888877765 67888888888888887754 5677778888888888876 45677778888888888
Q ss_pred ecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEee
Q 000962 667 ELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1208)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 746 (1208)
++++|.+..+.. +..+..+++|++|++.++.. .. .....+..+++|+.|+++
T Consensus 107 ~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l-~~--------------------------~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 107 DFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHT-RV--------------------------AFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp ECTTSEEESSTT-TTTTTTCTTCCEEECTTSCC-EE--------------------------CSTTTTTTCTTCCEEECT
T ss_pred ECCCCccccccc-chhhhhccCCCEEECCCCcC-Cc--------------------------cchhhcccCcCCCEEECC
Confidence 888876543211 13566677777776654311 00 011123344455555555
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCC-CcccccCCCCceeEEEEeCcCCCCcc--ccCCCCC
Q 000962 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSS 823 (1208)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~ 823 (1208)
+|.... ...+..+..+++|+.|+++++....+ |.++ ..+++|+.|+|++|.+.... .+..+++
T Consensus 159 ~n~l~~------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 159 GNSFQE------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TCEEGG------------GEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred CCcccc------------ccchhHHhhCcCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCCCccCccChhhccCccc
Confidence 443221 00112344455566666654444333 3334 34555666666665554443 4455555
Q ss_pred ccEEEEeCCCCce
Q 000962 824 LRVLNIKGMLELE 836 (1208)
Q Consensus 824 L~~L~L~~~~~~~ 836 (1208)
|++|+|++|....
T Consensus 225 L~~L~L~~N~l~~ 237 (306)
T 2z66_A 225 LQVLDYSLNHIMT 237 (306)
T ss_dssp CCEEECTTSCCCB
T ss_pred CCEeECCCCCCcc
Confidence 6666555554433
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=1.7e-16 Score=187.72 Aligned_cols=219 Identities=22% Similarity=0.228 Sum_probs=136.6
Q ss_pred CcccEEecCCCCCccc-ccccccCCcccEEeecCCCccccc-hhhccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 591 KYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
++|++|+|++|.++.+ |..|.++++|++|+|++|.|..++ ..|.++++|++|+|++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5788999999988855 567888999999999999888765 57888999999999988744433445788889999999
Q ss_pred ccccccccccCC-ccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeee
Q 000962 669 EEMFWFKCSTLP-AGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEW 747 (1208)
Q Consensus 669 ~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 747 (1208)
++|.+. .+| ..+.++++|+.|++.+++..... ....+..+++|+.|+++.
T Consensus 155 ~~N~l~---~~~~~~~~~l~~L~~L~l~~~~~l~~i--------------------------~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 155 RNNPIE---SIPSYAFNRVPSLMRLDLGELKKLEYI--------------------------SEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CSCCCC---EECTTTTTTCTTCCEEECCCCTTCCEE--------------------------CTTTTTTCTTCCEEECTT
T ss_pred CCCCcc---eeCHhHHhcCCcccEEeCCCCCCcccc--------------------------ChhhccCCCCCCEEECCC
Confidence 988664 344 35677888888877653321111 111234455666666666
Q ss_pred cCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCC-CcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCc
Q 000962 748 SNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSL 824 (1208)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L 824 (1208)
|..... ..+..+++|+.|++++|....+ |.++ ..+++|+.|+|++|.+.... .+..+++|
T Consensus 206 n~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 206 CNIKDM---------------PNLTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp SCCSSC---------------CCCTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred Cccccc---------------ccccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 544311 1244555666666665544444 3334 44666666666666655543 45566666
Q ss_pred cEEEEeCCCCceecCC-CCCCccccccccCCC
Q 000962 825 RVLNIKGMLELEKWPN-DEDCRFLGRLKISNC 855 (1208)
Q Consensus 825 ~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~ 855 (1208)
++|+|++|......+. +..+++|+.|++++|
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 6666666644332221 233444444444444
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=2.2e-16 Score=185.94 Aligned_cols=219 Identities=23% Similarity=0.275 Sum_probs=134.8
Q ss_pred CcccEEecCCCCCcccc-cccccCCcccEEeecCCCccccc-hhhccCCcccEEecCCCccccccc-hhcccccccceee
Q 000962 591 KYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLP-NSICNLYNLQTLKLIGCIWIMELP-KDLANLVKLRNLE 667 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~ 667 (1208)
+++++|+|++|.++.++ ..|.++++|++|+|++|.+..++ ..|.++++|++|+|++|.+. .+| ..+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceee
Confidence 67888888888888654 66888888899999888888765 57888888899998888744 444 4678888888888
Q ss_pred cccccccccccCC-ccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEee
Q 000962 668 LEEMFWFKCSTLP-AGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1208)
Q Consensus 668 l~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 746 (1208)
+++|.+. .+| ..+.++++|++|++.+++...... ...+..+++|+.|+++
T Consensus 143 L~~N~i~---~~~~~~~~~l~~L~~L~l~~~~~l~~i~--------------------------~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 143 LRNNPIE---SIPSYAFNRIPSLRRLDLGELKRLSYIS--------------------------EGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCSCCCC---EECTTTTTTCTTCCEEECCCCTTCCEEC--------------------------TTTTTTCSSCCEEECT
T ss_pred CCCCccc---ccCHHHhhhCcccCEeCCCCCCCcceeC--------------------------cchhhcccccCeecCC
Confidence 8888654 333 356777888887776533211111 1123444556666666
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCC-CcccccCCCCceeEEEEeCcCCCCcc--ccCCCCC
Q 000962 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSL-PQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSS 823 (1208)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~ 823 (1208)
+|..... ..+..+++|+.|++++|....+ |..+ ..+++|+.|+|++|.+.... .+..+++
T Consensus 194 ~n~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 194 MCNLREI---------------PNLTPLIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp TSCCSSC---------------CCCTTCSSCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred CCcCccc---------------cccCCCcccCEEECCCCccCccChhhh--ccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 5544311 1244555666666665444444 3333 44666666666666555544 4556666
Q ss_pred ccEEEEeCCCCceecCC-CCCCccccccccCCCC
Q 000962 824 LRVLNIKGMLELEKWPN-DEDCRFLGRLKISNCP 856 (1208)
Q Consensus 824 L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 856 (1208)
|++|+|++|......+. +..++.|+.+++++|+
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 66666666644333221 2334444444444443
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=186.21 Aligned_cols=242 Identities=19% Similarity=0.181 Sum_probs=187.0
Q ss_pred eeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccc-cccccCCcccE
Q 000962 540 TRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRY 618 (1208)
Q Consensus 540 ~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~ 618 (1208)
.+.+......+..++.. -.++++.|.+. .+.+..+.+..|.++++|++|+|++|.++.++ ..|.++++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~---~~~~l~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG---ISTNTRLLNLH-----ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp SCEEECCSCCCSSCCSC---CCTTCSEEECC-----SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCEEEeCCCCcCcCCCC---CCCCCcEEEcc-----CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 34555555566666532 23678899887 55666666778999999999999999999765 67999999999
Q ss_pred EeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCc-cCCCCCcCcCCCceE
Q 000962 619 LDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPA-GIGKLTNLHNLHVFR 696 (1208)
Q Consensus 619 L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~ 696 (1208)
|+|++|.++.+|. .|.++++|++|++++|.+....+..+.++++|++|++++|.. +..+|. .+..+++|++|++.+
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSCCEEECTT
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC--cceeCcchhhcccccCeecCCC
Confidence 9999999999887 699999999999999985544455789999999999998632 344554 578899999998876
Q ss_pred ecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCC
Q 000962 697 VGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPN 776 (1208)
Q Consensus 697 ~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 776 (1208)
+... .+ ..+..+.+|+.|+|++|......+ ..+..+++
T Consensus 195 n~l~---------~~--------------------~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~l~~ 232 (440)
T 3zyj_A 195 CNLR---------EI--------------------PNLTPLIKLDELDLSGNHLSAIRP-------------GSFQGLMH 232 (440)
T ss_dssp SCCS---------SC--------------------CCCTTCSSCCEEECTTSCCCEECT-------------TTTTTCTT
T ss_pred CcCc---------cc--------------------cccCCCcccCEEECCCCccCccCh-------------hhhccCcc
Confidence 4211 11 124556788999998886653222 45677899
Q ss_pred CcEEEEeeeCCCCCCc-ccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCc
Q 000962 777 LEELQIFNYFGNSLPQ-WMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLEL 835 (1208)
Q Consensus 777 L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~ 835 (1208)
|+.|+++++....++. .+ ..+++|+.|+|++|.+.... .+..+++|+.|+|++|+..
T Consensus 233 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAF--DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTCCCCEECTTSS--TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCceeEEChhhh--cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999999777666654 44 67899999999999988766 6789999999999998643
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=1.3e-17 Score=186.86 Aligned_cols=241 Identities=14% Similarity=0.060 Sum_probs=162.6
Q ss_pred ccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhcc
Q 000962 556 SVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICN 635 (1208)
Q Consensus 556 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 635 (1208)
..+..+++|+.|.+. .+.+....+..|..+++|++|+|++|.++.+++ +..+++|++|+|++|.++.+|.
T Consensus 28 ~~~~~~~~L~~L~L~-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~---- 97 (317)
T 3o53_A 28 SLRQSAWNVKELDLS-----GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV---- 97 (317)
T ss_dssp HHHTTGGGCSEEECT-----TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----
T ss_pred HHhccCCCCCEEECc-----CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----
Confidence 345567799999997 566667777889999999999999999987665 9999999999999999988774
Q ss_pred CCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCC
Q 000962 636 LYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLT 715 (1208)
Q Consensus 636 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 715 (1208)
+++|++|++++|.+.+ ++. ..+++|++|++++|.+..+ .|..++.+++|++|++.++.. ....+..
T Consensus 98 ~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~-------- 163 (317)
T 3o53_A 98 GPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEI-DTVNFAE-------- 163 (317)
T ss_dssp CTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCCSG--GGBCTGGGSSEEEEECTTSCC-CEEEGGG--------
T ss_pred CCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCCCc--cchhhhccCCCCEEECCCCCC-CcccHHH--------
Confidence 4899999999998544 332 3478899999999976532 234677788888888765421 1111111
Q ss_pred CceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccc
Q 000962 716 GKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMR 795 (1208)
Q Consensus 716 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 795 (1208)
....+++|+.|++++|..... .....+++|+.|+++++....+|..+
T Consensus 164 -----------------~~~~l~~L~~L~L~~N~l~~~---------------~~~~~l~~L~~L~Ls~N~l~~l~~~~- 210 (317)
T 3o53_A 164 -----------------LAASSDTLEHLNLQYNFIYDV---------------KGQVVFAKLKTLDLSSNKLAFMGPEF- 210 (317)
T ss_dssp -----------------GGGGTTTCCEEECTTSCCCEE---------------ECCCCCTTCCEEECCSSCCCEECGGG-
T ss_pred -----------------HhhccCcCCEEECCCCcCccc---------------ccccccccCCEEECCCCcCCcchhhh-
Confidence 112345677777776654311 12223567777777766666666665
Q ss_pred cCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCc-eecC-CCCCCccccccccCC
Q 000962 796 DGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLEL-EKWP-NDEDCRFLGRLKISN 854 (1208)
Q Consensus 796 ~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~-~~~~-~~~~~~~L~~L~l~~ 854 (1208)
..+++|+.|+|++|.+.... .+..+++|+.|++++|... ..++ .+..++.|+.+++++
T Consensus 211 -~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 211 -QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp -GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred -cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 45777777777777666544 5666777777777777654 2211 123344455554443
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=2.6e-16 Score=186.16 Aligned_cols=240 Identities=17% Similarity=0.150 Sum_probs=184.8
Q ss_pred eEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccc-cccccCCcccEE
Q 000962 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYL 619 (1208)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L 619 (1208)
+.+......+..++.. -.++++.|.+. .+.+..+.+..|.++++|++|+|++|.++.++ ..|.++++|++|
T Consensus 57 ~~v~c~~~~l~~iP~~---~~~~l~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQG---IPSNTRYLNLM-----ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp CEEECCSSCCSSCCSC---CCTTCSEEECC-----SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cEEEECCCCcCccCCC---CCCCccEEECc-----CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 4555555555555532 23689999987 56666677778999999999999999999665 679999999999
Q ss_pred eecCCCccccchh-hccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCc-cCCCCCcCcCCCceEe
Q 000962 620 DLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPA-GIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 620 ~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~ 697 (1208)
+|++|.++.+|.. |.++++|++|+|++|.+....+..+.++++|++|++++|. .++.+|. .+..+++|+.|++.++
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTS
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--CccccChhhccCCCCCCEEECCCC
Confidence 9999999988774 8999999999999998554444578999999999999853 2345554 4788999999988664
Q ss_pred cccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCC
Q 000962 698 GSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNL 777 (1208)
Q Consensus 698 ~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L 777 (1208)
... .+ ..+..+.+|+.|+|++|...... +..+..+++|
T Consensus 207 ~l~---------~~--------------------~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~l~~L 244 (452)
T 3zyi_A 207 NIK---------DM--------------------PNLTPLVGLEELEMSGNHFPEIR-------------PGSFHGLSSL 244 (452)
T ss_dssp CCS---------SC--------------------CCCTTCTTCCEEECTTSCCSEEC-------------GGGGTTCTTC
T ss_pred ccc---------cc--------------------ccccccccccEEECcCCcCcccC-------------cccccCccCC
Confidence 211 11 12445678889999888665322 2467788999
Q ss_pred cEEEEeeeCCCCCC-cccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCC
Q 000962 778 EELQIFNYFGNSLP-QWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLE 834 (1208)
Q Consensus 778 ~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~ 834 (1208)
+.|+++++....++ ..+ ..+++|+.|+|++|.+.... .+..+++|+.|+|++|+.
T Consensus 245 ~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 99999977666554 445 66899999999999888766 678899999999999864
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=1.9e-19 Score=222.34 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=78.9
Q ss_pred HHHHhccCCcccEEecCCCCC-cc---ccc------------ccccCCcccEEeecCCCcc-ccchhhc-cCCcccEEec
Q 000962 583 LDKIFHQLKYLRLLDLSSSTL-TV---LPD------------SVEELKLLRYLDLSRTEIK-VLPNSIC-NLYNLQTLKL 644 (1208)
Q Consensus 583 ~~~~~~~l~~Lr~L~L~~~~i-~~---lp~------------~i~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~L~~L~L 644 (1208)
+...+..+++|+.|+|+++.. .. .|. ....+++|++|+|++|.+. ..+..+. .+++|++|++
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence 446678899999999999752 21 121 1346789999999999887 3345554 6899999999
Q ss_pred CCCccccc--cchhcccccccceeecccccccccc--cCCccCCCCCcCcCCCceE
Q 000962 645 IGCIWIME--LPKDLANLVKLRNLELEEMFWFKCS--TLPAGIGKLTNLHNLHVFR 696 (1208)
Q Consensus 645 ~~~~~~~~--lp~~i~~L~~L~~L~l~~n~~~~~~--~lp~~i~~l~~L~~L~l~~ 696 (1208)
++|..++. ++..+.++++|++|++++|.+...+ .++.....+++|+.|++.+
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~ 193 (594)
T 2p1m_B 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193 (594)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTT
T ss_pred CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecc
Confidence 99854444 5555568999999999998754321 1233334566777776654
No 72
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.64 E-value=4.2e-15 Score=173.87 Aligned_cols=316 Identities=12% Similarity=0.021 Sum_probs=186.2
Q ss_pred CCccccchhhHHHHHHHH-cCCCCCCCCCcEEEEE--EecCCchHHHHHHHHhccccccc---ccc-eeEEEEecCCCCh
Q 000962 170 TANVFGRDDDKERILHML-LSDEFDEEDDAFVIPI--IGMPGLGKTTLAQLLFNEERVRE---HFE-SRMWVCVTVDYDL 242 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~---~F~-~~~wv~~~~~~~~ 242 (1208)
+..++||+.+++++..++ .....+.......+.| +|++|+||||||+++++...... .|+ .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4211000012445666 99999999999999998422110 122 3578887777788
Q ss_pred HHHHHHHHHHcccCCCC-CCcHHHHHHHHHHHhc--CCceEEEEecCCCCCc------cChHHHHHhhhCC---C--CCc
Q 000962 243 PRILKGMIEFHSKMEQS-TSSISLLETRLLEFLT--GQRFLLVLDDVWNEDY------RKWEPLQQLLKQG---H--KGS 308 (1208)
Q Consensus 243 ~~~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~~------~~~~~l~~~l~~~---~--~gs 308 (1208)
..++..++..++..... ..+...+...+.+.+. +++++|||||+|.... ..+..+...+... + .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999888654322 3345556666666664 7899999999965321 2223333333221 2 344
Q ss_pred EEEEecCChhHHhhh--------C-CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcC-----
Q 000962 309 RVLVTSRTARVSQIM--------G-IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCK----- 374 (1208)
Q Consensus 309 ~iivTtR~~~v~~~~--------~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~----- 374 (1208)
.||+||+...+...+ . ....+++.+++.++++++|...+...... ..-..+.+..|++.++
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-----TVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-----TSCCHHHHHHHHHHHCGGGTS
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-----CCCChHHHHHHHHHHHHhccC
Confidence 588888765533211 1 12238999999999999997654311100 0111456788999999
Q ss_pred -CChHHHHHHHhhh---c---cC--CChhHHHHHHhhcccccccCCCCCCCCccchhccccCCChhHHHHHHHhccCC--
Q 000962 375 -GLPLAVKAIAGFL---R---KY--DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFP-- 443 (1208)
Q Consensus 375 -g~PLai~~~~~~l---~---~~--~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp-- 443 (1208)
|.|..+..+.... . .. -+.+.+..++.... . ...+.-++..||++.+.++..++.+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------~-~~~~~~~l~~l~~~~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-----------A-ASIQTHELEALSIHELIILRLIAEATLG 323 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----------c-cchHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9997655544321 1 11 12334444433210 0 23345577899999999999888654
Q ss_pred CCCccChHHHHHHHHHc--cccccCCCCCCccHHHHHHHHHHHHHhccCcccccC--CCcceEEEhhh
Q 000962 444 KSYAFDKAEMVKFWMAE--ALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSNI--DDKVKYQMHDL 507 (1208)
Q Consensus 444 ~~~~i~~~~li~~w~ae--g~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~--~~~~~~~mhdl 507 (1208)
.+..+...++...|... .... ....+ ......++++|++.++|..... +...+|++|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l 386 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASLTMYN----VKPRG-YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRL 386 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHHHHSC----CCCCC-HHHHHHHHHHHHHTTSEEEECC-------CCEEEE
T ss_pred CCCCccHHHHHHHHHHHHHhhcC----CCCCC-HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEe
Confidence 23356666665555321 1111 00111 4556788999999999986542 22334444444
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.2e-16 Score=178.45 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=38.1
Q ss_pred CCcccEEecCCCCCc-cccccc--ccCCcccEEeecCCCccccchhhccC-----CcccEEecCCCccccccchhccccc
Q 000962 590 LKYLRLLDLSSSTLT-VLPDSV--EELKLLRYLDLSRTEIKVLPNSICNL-----YNLQTLKLIGCIWIMELPKDLANLV 661 (1208)
Q Consensus 590 l~~Lr~L~L~~~~i~-~lp~~i--~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~~~~lp~~i~~L~ 661 (1208)
+++|++|+|++|.++ .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++|.+.+..|..+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 444444444444444 344433 44444444444444444444444444 4444444444443333334444444
Q ss_pred ccceeeccccc
Q 000962 662 KLRNLELEEMF 672 (1208)
Q Consensus 662 ~L~~L~l~~n~ 672 (1208)
+|++|++++|.
T Consensus 174 ~L~~L~Ls~N~ 184 (312)
T 1wwl_A 174 ALSTLDLSDNP 184 (312)
T ss_dssp SCCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 44444444443
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=1.5e-15 Score=167.51 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=53.0
Q ss_pred cCCCCCCcEEEEeeeCCCCCCcc-cccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecCC-CCCCcc
Q 000962 771 LQPHPNLEELQIFNYFGNSLPQW-MRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWPN-DEDCRF 846 (1208)
Q Consensus 771 l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~ 846 (1208)
+..+++|+.|+++++....+|.. + ..+++|+.|++++|.+.... .++.+++|++|++++|......+. +..++.
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hccCCCccEEECCCCcccccCHHHh--cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44556777777776655555543 4 45777888888888776654 677777888888877754443321 344555
Q ss_pred ccccccCCCCC
Q 000962 847 LGRLKISNCPR 857 (1208)
Q Consensus 847 L~~L~l~~~~~ 857 (1208)
|+.+++++|+.
T Consensus 227 L~~L~l~~N~~ 237 (285)
T 1ozn_A 227 LQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSSCE
T ss_pred cCEEeccCCCc
Confidence 55555555543
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=9.1e-17 Score=179.58 Aligned_cols=249 Identities=16% Similarity=0.144 Sum_probs=149.6
Q ss_pred ccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCc--ccccccc-------cCCcccEEeecCCCcc-
Q 000962 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT--VLPDSVE-------ELKLLRYLDLSRTEIK- 627 (1208)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~-------~l~~Lr~L~L~~~~i~- 627 (1208)
+...++|+.+.+. .+.+ .++..... . |++|+|++|.+. .+|..+. ++++|++|+|++|.++
T Consensus 39 ~~~~~~L~~l~l~-----~n~l-~~p~~~~~-~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 39 YGGGRSLEYLLKR-----VDTE-ADLGQFTD-I--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEEEEECTTHHHH-----CCTT-CCCHHHHH-H--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred EccCCCceeEeec-----cccc-ccHHHHHH-H--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence 3445556666554 2333 22322222 2 888899998885 5676665 7889999999999988
Q ss_pred ccchhh--ccCCcccEEecCCCccccccchhcccc-----cccceeecccccccccccCCccCCCCCcCcCCCceEeccc
Q 000962 628 VLPNSI--CNLYNLQTLKLIGCIWIMELPKDLANL-----VKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSK 700 (1208)
Q Consensus 628 ~lp~~i--~~L~~L~~L~L~~~~~~~~lp~~i~~L-----~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 700 (1208)
.+|..+ +.+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.. ..|..++.+++|++|++.++...
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN--FSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC--CCTTTCCCCSSCCEEECCSCTTC
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc--chHHHhccCCCCCEEECCCCCcC
Confidence 678876 8899999999999885544 8777777 899999999986642 23367888889998888765311
Q ss_pred CCC-ChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcE
Q 000962 701 SGY-RIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEE 779 (1208)
Q Consensus 701 ~~~-~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 779 (1208)
... .+..+ .+..+++|+.|++++|.... ........+..+++|+.
T Consensus 187 ~~~~~~~~~------------------------~~~~l~~L~~L~L~~N~l~~----------~~~~~~~~~~~l~~L~~ 232 (312)
T 1wwl_A 187 GERGLISAL------------------------CPLKFPTLQVLALRNAGMET----------PSGVCSALAAARVQLQG 232 (312)
T ss_dssp HHHHHHHHS------------------------CTTSCTTCCEEECTTSCCCC----------HHHHHHHHHHTTCCCSE
T ss_pred cchHHHHHH------------------------HhccCCCCCEEECCCCcCcc----------hHHHHHHHHhcCCCCCE
Confidence 100 01111 11344556666666554321 00111122234556666
Q ss_pred EEEeeeCCCCCC--cccccCCCCceeEEEEeCcCCCCcc-ccCCCCCccEEEEeCCCCceecCCCCCCccccccccCCCC
Q 000962 780 LQIFNYFGNSLP--QWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLRVLNIKGMLELEKWPNDEDCRFLGRLKISNCP 856 (1208)
Q Consensus 780 L~l~~~~~~~~p--~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 856 (1208)
|+++++.....+ ..+ ..+++|+.|+|++|.+.... .+. ++|++|+|++|..... +.+..++.|+.|++++|+
T Consensus 233 L~Ls~N~l~~~~~~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 233 LDLSHNSLRDAAGAPSC--DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EECTTSCCCSSCCCSCC--CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred EECCCCcCCcccchhhh--hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 766655444332 122 33566777777776665433 222 6667777766654433 335556666666666665
Q ss_pred C
Q 000962 857 R 857 (1208)
Q Consensus 857 ~ 857 (1208)
.
T Consensus 308 l 308 (312)
T 1wwl_A 308 F 308 (312)
T ss_dssp T
T ss_pred C
Confidence 4
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=4.8e-16 Score=184.52 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=35.6
Q ss_pred CCCCCcEEEEeeeCCCCCC-cccccCCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCC
Q 000962 773 PHPNLEELQIFNYFGNSLP-QWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGML 833 (1208)
Q Consensus 773 ~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~ 833 (1208)
.+++|+.|+++++....++ ..+ ..+++|+.|+|++|.+.+..+++.+++|++|+|++|.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADL--APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGG--TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE
T ss_pred cCCCccEEEeeCCcCCCCCHHHH--hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc
Confidence 3446666766655554444 344 4566677777766666554456666666666666664
No 77
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.61 E-value=1.3e-15 Score=138.18 Aligned_cols=81 Identities=30% Similarity=0.359 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHhc--ccCChHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000962 13 IVEKAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEER--QLKVPQLKDWLGKLRNAAYDAEDILETFATQ 90 (1208)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~~d~ed~ld~~~~~ 90 (1208)
+++.+++|+.+++.+|+..+.|+++++++|+++|++|++||.+|+++ +..++.++.|+++|||+|||+||+||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999988 5678999999999999999999999999998
Q ss_pred HHH
Q 000962 91 VAM 93 (1208)
Q Consensus 91 ~~~ 93 (1208)
...
T Consensus 82 ~~~ 84 (115)
T 3qfl_A 82 VDG 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 753
No 78
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=2.3e-14 Score=163.57 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=178.9
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC------ChH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY------DLP 243 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~~~ 243 (1208)
+..|+||+.+++++.+++... +++.|+|++|+|||||++++++.. + .+|+++.... +..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHH
Confidence 457999999999999988642 589999999999999999998732 1 6788775442 455
Q ss_pred HHHHHHHHHccc---------------C-CC--CCCcHHHHHHHHHHHhcC-CceEEEEecCCCCCc-------cChHHH
Q 000962 244 RILKGMIEFHSK---------------M-EQ--STSSISLLETRLLEFLTG-QRFLLVLDDVWNEDY-------RKWEPL 297 (1208)
Q Consensus 244 ~~~~~i~~~~~~---------------~-~~--~~~~~~~l~~~l~~~L~~-kr~LlVlDdvw~~~~-------~~~~~l 297 (1208)
.++..+.+.+.. . .. .......+.+.+.+..+. ++.+||+||++..+. ..+..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 666666655432 0 00 023455566666665543 389999999965321 112223
Q ss_pred HHhhhCCCCCcEEEEecCChhHHhhh-----------CC-CCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHH
Q 000962 298 QQLLKQGHKGSRVLVTSRTARVSQIM-----------GI-RSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAI 365 (1208)
Q Consensus 298 ~~~l~~~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~ 365 (1208)
..... ...+.++|+|++...+...+ +. ...+++.+|+.+|+.+++.......+.. ...+.
T Consensus 156 ~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-------~~~~~ 227 (350)
T 2qen_A 156 AYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-------VPENE 227 (350)
T ss_dssp HHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-------CCHHH
T ss_pred HHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-------CCHHH
Confidence 33222 22578899999876532211 11 2378999999999999998754322211 11356
Q ss_pred HHHHHHhcCCChHHHHHHHhhhccCCChhHHHH-HHhhcccccccCCCCCCCCccchhccccCCChhHHHHHHHhccCCC
Q 000962 366 GREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRK-ILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPK 444 (1208)
Q Consensus 366 ~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~ 444 (1208)
+.+|++.++|+|+++..++..+....+...+.. +.+.....+. ..+ -.+.+ + ++..+..+..+|.
T Consensus 228 ~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l---~~l~~-~-~~~~~~~l~~la~--- 293 (350)
T 2qen_A 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIM------GEL---EELRR-R-SPRYVDILRAIAL--- 293 (350)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------HHH---HHHHH-H-CHHHHHHHHHHHT---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH------HHH---HHHHh-C-ChhHHHHHHHHHh---
Confidence 789999999999999999876533222222211 1111000000 011 11112 2 7888999999987
Q ss_pred CCccChHHHHHHHHHccccccCCCCCCccHHHHHHHHHHHHHhccCcccccCCCcceEEE-hhhHHHHHH
Q 000962 445 SYAFDKAEMVKFWMAEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQM-HDLFHDLAQ 513 (1208)
Q Consensus 445 ~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~m-hdlv~~~a~ 513 (1208)
+ .++...+.....+. . + ..+ ......+++.|++.++|.... ..|.+ |++++++.+
T Consensus 294 g-~~~~~~l~~~~~~~-~-----~--~~~-~~~~~~~l~~L~~~gli~~~~----~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 294 G-YNRWSLIRDYLAVK-G-----T--KIP-EPRLYALLENLKKMNWIVEED----NTYKIADPVVATVLR 349 (350)
T ss_dssp T-CCSHHHHHHHHHHT-T-----C--CCC-HHHHHHHHHHHHHTTSEEEET----TEEEESSHHHHHHHT
T ss_pred C-CCCHHHHHHHHHHH-h-----C--CCC-HHHHHHHHHHHHhCCCEEecC----CEEEEecHHHHHHHc
Confidence 2 23445555443221 0 0 011 455678999999999998652 34555 777777643
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=5.1e-16 Score=184.29 Aligned_cols=216 Identities=13% Similarity=0.081 Sum_probs=118.5
Q ss_pred cCCcccEEecCCCCCccc-ccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceee
Q 000962 589 QLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 667 (1208)
.+++|++|+|++|.++.+ |..|+.+++|++|+|++|.+..+++ ++.+++|++|+|++|. +..+| ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEE
Confidence 344777777777777755 3567777777777777777776554 7777777777777776 33333 236777777
Q ss_pred cccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeee
Q 000962 668 LEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEW 747 (1208)
Q Consensus 668 l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 747 (1208)
+++|.+..+ |. ..+++|+.|++.++. ..+..+. .+..+++|+.|+|++
T Consensus 106 L~~N~l~~~---~~--~~l~~L~~L~L~~N~-l~~~~~~--------------------------~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 106 AANNNISRV---SC--SRGQGKKNIYLANNK-ITMLRDL--------------------------DEGCRSRVQYLDLKL 153 (487)
T ss_dssp CCSSCCCCE---EE--CCCSSCEEEECCSSC-CCSGGGB--------------------------CGGGGSSEEEEECTT
T ss_pred CcCCcCCCC---Cc--cccCCCCEEECCCCC-CCCCCch--------------------------hhcCCCCCCEEECCC
Confidence 777755432 22 235666666665532 1111111 223334455555554
Q ss_pred cCCCCCCCCCCCCccchHHHhhccC-CCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc-ccCCCCCcc
Q 000962 748 SNNRDSSPQSQDVSGDEERLLEDLQ-PHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL-SLGQLSSLR 825 (1208)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~-~l~~l~~L~ 825 (1208)
|...... +..+. .+++|+.|++++|....+|... .+++|+.|+|++|.+.... .++.+++|+
T Consensus 154 N~l~~~~-------------~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 217 (487)
T 3oja_A 154 NEIDTVN-------------FAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217 (487)
T ss_dssp SCCCEEE-------------GGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred CCCCCcC-------------hHHHhhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCcc
Confidence 4333111 11121 3445555555544444443322 2555666666665555443 455555666
Q ss_pred EEEEeCCCCceecCCCCCCccccccccCCCCCC
Q 000962 826 VLNIKGMLELEKWPNDEDCRFLGRLKISNCPRL 858 (1208)
Q Consensus 826 ~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 858 (1208)
.|+|++|.....++.+..++.|+.+++++|+..
T Consensus 218 ~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred EEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 666665554444444445555555666655544
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=3.2e-15 Score=164.04 Aligned_cols=204 Identities=23% Similarity=0.112 Sum_probs=103.0
Q ss_pred cccEEecCCCCCccccc-ccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceeecc
Q 000962 592 YLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 669 (1208)
.|++|+|++|.++.++. .|.++++|++|+|++|.+..+|. .+.++++|++|++++|.+....|..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554443 45555555555555555554443 45555555555555555333333445555555555555
Q ss_pred cccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecC
Q 000962 670 EMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSN 749 (1208)
Q Consensus 670 ~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 749 (1208)
+|.+..+ .+..++.+++|++|++.++...... ....+..+++|+.|++++|.
T Consensus 109 ~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 109 ETNLASL--ENFPIGHLKTLKELNVAHNLIQSFK--------------------------LPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TSCCCCS--TTCCCTTCTTCCEEECCSSCCCCCC--------------------------CCGGGGGCTTCCEEECCSSC
T ss_pred CCCcccc--CchhcccCCCCCEEECcCCccceec--------------------------CchhhccCCCCCEEECCCCC
Confidence 5543321 1113445555555554432110000 01122333444455555443
Q ss_pred CCCCCCCCCCCccchHHHhhccCCCCCCc-EEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccE
Q 000962 750 NRDSSPQSQDVSGDEERLLEDLQPHPNLE-ELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRV 826 (1208)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~ 826 (1208)
.....+ ..+..+..++.|. .|+++++....+|.... ...+|+.|+|++|.+.... .++.+++|++
T Consensus 161 l~~~~~----------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 161 IQSIYC----------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp CCEECG----------GGGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCcCCH----------HHhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccE
Confidence 321110 0111122222333 56666666666665542 3457888888888877665 4677888888
Q ss_pred EEEeCCCCc
Q 000962 827 LNIKGMLEL 835 (1208)
Q Consensus 827 L~L~~~~~~ 835 (1208)
|+|++|+..
T Consensus 229 L~l~~N~~~ 237 (276)
T 2z62_A 229 IWLHTNPWD 237 (276)
T ss_dssp EECCSSCBC
T ss_pred EEccCCccc
Confidence 888887643
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=2.7e-15 Score=166.89 Aligned_cols=191 Identities=20% Similarity=0.221 Sum_probs=131.3
Q ss_pred cCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
.+++|++|++++|.+..+| .+..+++|++|+|++|.+..+|. +.++++|++|++++|. +..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4667788888888877776 57778888888888888887776 7888888888888877 44454 5777888888888
Q ss_pred ccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeec
Q 000962 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1208)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 748 (1208)
++|.+.. +| .+..+++|++|++.++.. ... ..+..+++|+.|+++.|
T Consensus 115 ~~n~l~~---~~-~l~~l~~L~~L~l~~n~l-~~~----------------------------~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 115 TSTQITD---VT-PLAGLSNLQVLYLDLNQI-TNI----------------------------SPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp TTSCCCC---CG-GGTTCTTCCEEECCSSCC-CCC----------------------------GGGGGCTTCCEEECCSS
T ss_pred CCCCCCC---ch-hhcCCCCCCEEECCCCcc-CcC----------------------------ccccCCCCccEEEccCC
Confidence 8876543 33 366777777777655321 000 01334456667777666
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCccccCCCCCccEEE
Q 000962 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLN 828 (1208)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~ 828 (1208)
..... ..+..+++|+.|+++++....++. + ..+++|+.|+|++|.+....++..+++|++|+
T Consensus 162 ~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 162 QVSDL---------------TPLANLSKLTTLKADDNKISDISP-L--ASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223 (308)
T ss_dssp CCCCC---------------GGGTTCTTCCEEECCSSCCCCCGG-G--GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEE
T ss_pred cCCCC---------------hhhcCCCCCCEEECCCCccCcChh-h--cCCCCCCEEEccCCccCccccccCCCCCCEEE
Confidence 44311 125566788888888776666665 3 55788888888888777666777888888888
Q ss_pred EeCCCC
Q 000962 829 IKGMLE 834 (1208)
Q Consensus 829 L~~~~~ 834 (1208)
+++|..
T Consensus 224 l~~N~i 229 (308)
T 1h6u_A 224 LTNQTI 229 (308)
T ss_dssp EEEEEE
T ss_pred ccCCee
Confidence 888753
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=3.4e-15 Score=163.07 Aligned_cols=207 Identities=20% Similarity=0.172 Sum_probs=137.4
Q ss_pred ccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceee
Q 000962 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 667 (1208)
..++.|+.|++++|.++.++ .+..+++|++|+|++|.+..++ .++++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 45677888888888877765 3777888888888888887764 677888888888888875444444567888888888
Q ss_pred cccccccccccCCc-cCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEee
Q 000962 668 LEEMFWFKCSTLPA-GIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFE 746 (1208)
Q Consensus 668 l~~n~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 746 (1208)
+++|.+. .+|. .++.+++|++|++.++.
T Consensus 116 L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~------------------------------------------------ 144 (272)
T 3rfs_A 116 LVENQLQ---SLPDGVFDKLTNLTYLNLAHNQ------------------------------------------------ 144 (272)
T ss_dssp CTTSCCC---CCCTTTTTTCTTCCEEECCSSC------------------------------------------------
T ss_pred CCCCcCC---ccCHHHhccCCCCCEEECCCCc------------------------------------------------
Confidence 8887553 3333 34666666666654431
Q ss_pred ecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCc
Q 000962 747 WSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSL 824 (1208)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L 824 (1208)
.....+ ..+..+++|+.|+++++....+|.... ..+++|+.|++++|.+.... .++.+++|
T Consensus 145 ---l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 145 ---LQSLPK-------------GVFDKLTNLTELDLSYNQLQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp ---CCCCCT-------------TTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ---cCccCH-------------HHhccCccCCEEECCCCCcCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 110000 123344566666666555455554322 45788888888888777665 47788888
Q ss_pred cEEEEeCCCCceecCCCCCCccccccccCCCCCCCccCccCCCcCE
Q 000962 825 RVLNIKGMLELEKWPNDEDCRFLGRLKISNCPRLNELPECMPNLTV 870 (1208)
Q Consensus 825 ~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~ 870 (1208)
++|++++|+... .++.++.++++.|...+.+|..+.++..
T Consensus 208 ~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 208 QYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CEEEccCCCccc------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 888888885432 2556777777777777777776665543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=5.1e-15 Score=165.23 Aligned_cols=208 Identities=16% Similarity=0.048 Sum_probs=145.5
Q ss_pred cCCcccEEecCCCCCc-cccccc--ccCCcccEEeecCCCcccc-c----hhhccCCcccEEecCCCccccccchhcccc
Q 000962 589 QLKYLRLLDLSSSTLT-VLPDSV--EELKLLRYLDLSRTEIKVL-P----NSICNLYNLQTLKLIGCIWIMELPKDLANL 660 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~-~lp~~i--~~l~~Lr~L~L~~~~i~~l-p----~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 660 (1208)
.+++|++|+|++|.+. ..|..+ ..+++|++|+|++|.+... | ..+..+++|++|++++|.+....|..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4577999999999998 677777 8999999999999999842 2 356689999999999999766667789999
Q ss_pred cccceeecccccccccccCC--ccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCccc
Q 000962 661 VKLRNLELEEMFWFKCSTLP--AGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKE 738 (1208)
Q Consensus 661 ~~L~~L~l~~n~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~ 738 (1208)
++|++|++++|.+.....+| ..++.+++|++|++.++.... +.. .....+..++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~---------------------~~~~l~~~l~ 224 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET---PTG---------------------VCAALAAAGV 224 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC---HHH---------------------HHHHHHHHTC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc---hHH---------------------HHHHHHhcCC
Confidence 99999999999764322232 334788999999987642110 000 0001124456
Q ss_pred CcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcccc
Q 000962 739 SLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSL 818 (1208)
Q Consensus 739 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l 818 (1208)
+|+.|+|++|......|.. +..+..+++|+.|++++|....+|..+ +++|+.|+|++|.+.+...+
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~----------~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~~~~ 290 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPS----------APRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRAPQP 290 (310)
T ss_dssp CCSSEECTTSCCCCCCCSC----------CSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSCCCT
T ss_pred CCCEEECCCCCCCccchhh----------HHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCCchh
Confidence 7778888877665433211 012223367888888877667777665 36778888888877664445
Q ss_pred CCCCCccEEEEeCCCC
Q 000962 819 GQLSSLRVLNIKGMLE 834 (1208)
Q Consensus 819 ~~l~~L~~L~L~~~~~ 834 (1208)
..+++|+.|+|++|+.
T Consensus 291 ~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 291 DELPEVDNLTLDGNPF 306 (310)
T ss_dssp TSCCCCSCEECSSTTT
T ss_pred hhCCCccEEECcCCCC
Confidence 6677777777777753
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=2.7e-14 Score=155.85 Aligned_cols=195 Identities=22% Similarity=0.278 Sum_probs=101.3
Q ss_pred cccEEecCCCCCcccccccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchh-cccccccceeecc
Q 000962 592 YLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKD-LANLVKLRNLELE 669 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~ 669 (1208)
.++.++++++.++.+|..+. .+|++|+|++|.+..+|. .|.++++|++|++++|. +..+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECC
Confidence 35666777766666666554 466777777776666654 56667777777776666 3344443 3566677777776
Q ss_pred cccccccccCCc-cCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeec
Q 000962 670 EMFWFKCSTLPA-GIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1208)
Q Consensus 670 ~n~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 748 (1208)
+|.+. .+|. .+..+++|++|++.++.. ... ....+..+++|+.|++++|
T Consensus 94 ~n~l~---~~~~~~~~~l~~L~~L~l~~n~l-~~~--------------------------~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 94 DNKLQ---ALPIGVFDQLVNLAELRLDRNQL-KSL--------------------------PPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp SSCCC---CCCTTTTTTCSSCCEEECCSSCC-CCC--------------------------CTTTTTTCTTCCEEECCSS
T ss_pred CCcCC---cCCHhHcccccCCCEEECCCCcc-Cee--------------------------CHHHhCcCcCCCEEECCCC
Confidence 66443 3332 335555666555543210 000 0011223344444554444
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccE
Q 000962 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRV 826 (1208)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~ 826 (1208)
......+ ..+..+++|+.|+++++....+|.... ..+++|+.|+|++|.+.... .+..+++|+.
T Consensus 144 ~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 144 ELQSLPK-------------GVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp CCCCCCT-------------TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCccCH-------------hHccCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 3321111 123444555666665554444444311 34556666666666555443 3555566666
Q ss_pred EEEeCCC
Q 000962 827 LNIKGML 833 (1208)
Q Consensus 827 L~L~~~~ 833 (1208)
|+|++|+
T Consensus 210 L~l~~N~ 216 (270)
T 2o6q_A 210 LQLQENP 216 (270)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 6665554
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=2.2e-14 Score=153.40 Aligned_cols=175 Identities=15% Similarity=0.137 Sum_probs=134.8
Q ss_pred CCCCeEEEeccCCCCCCCCC--ccccccceeeecC-CCCCccc-cCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcc---
Q 000962 947 FAPQKLEISGCDLLSTLPNS--EFSQRLQLLALEG-CPDGTLV-RAIPETSSLNFLILSKISNLDSFPRWPNLPGLK--- 1019 (1208)
Q Consensus 947 ~~l~~L~l~~~~~l~~lp~~--~~~~~L~~L~L~~-~~~~~~~-~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~--- 1019 (1208)
.++++|++++|..++.++.. ..+++|++|++++ |.....+ ..+.++++|+.|++++|.+.+ +|.+..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~ 133 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFF 133 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cccccccccccccc
Confidence 34577788887655555543 4568899999998 6655444 467788999999999997654 77788888888
Q ss_pred eEEEcCCCCCcCCcccCCCCCCCCcC-eEeecCCCCCccCCCCCCc-CCCCEEEEecCCCCcccCCcCCCCCC-CCCCce
Q 000962 1020 ALYIRDCKDLVSLSGEGALQSLTSLN-LLSIRGCPKLETLPDEGLP-TSLKCLIIASCSGLKSLGPRGTLKSL-NSLKDF 1096 (1208)
Q Consensus 1020 ~L~L~~c~~l~~~~~~~~l~~l~~L~-~L~l~~~~~l~~lp~~~~~-~~L~~L~l~~c~~l~~lp~~~~l~~l-~~L~~L 1096 (1208)
+|++++|+.++.++. ..+.++++|+ +|++++|. ++.+|...+. ++|++|++++|+.++.++. ..+..+ ++|+.|
T Consensus 134 ~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L 210 (239)
T 2xwt_C 134 ILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLL 210 (239)
T ss_dssp EEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEE
T ss_pred EEECCCCcchhhcCc-ccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEE
Confidence 999999955777775 4688999999 99999985 6678765443 6899999999977888865 368888 999999
Q ss_pred eecCCCCCCCCCCCCCCCccceEeccCChhh
Q 000962 1097 YIEDCPLLQSFPEDGLPENLQHLVIQNCPLL 1127 (1208)
Q Consensus 1097 ~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~L 1127 (1208)
++++| .++.+|.. .+++|+.|++++|+.|
T Consensus 211 ~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 211 DVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp ECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred ECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 99998 67888876 5578999999988753
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=1.8e-14 Score=158.41 Aligned_cols=103 Identities=22% Similarity=0.195 Sum_probs=70.5
Q ss_pred hccCCcccEEecCCCCCcccccccccCCcccEEeecCCCcccc-chhhccCCcccEEecCCCccccccchhcccccccce
Q 000962 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 665 (1208)
+.++++|+.++++++.++.+|..+. .+|++|+|++|.+..+ |..|.++++|++|++++|. +..+|.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 4556777777777777777776664 5777777777777765 3467777777777777776 3444433 67777777
Q ss_pred eecccccccccccCCccCCCCCcCcCCCceE
Q 000962 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1208)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1208)
|++++|.+ ..+|..+..+++|+.|++.+
T Consensus 82 L~Ls~N~l---~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 82 LDLSHNQL---QSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp EECCSSCC---SSCCCCTTTCTTCCEEECCS
T ss_pred EECCCCcC---CcCchhhccCCCCCEEECCC
Confidence 77777754 35566666666666666654
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=4.1e-15 Score=163.13 Aligned_cols=208 Identities=20% Similarity=0.177 Sum_probs=142.3
Q ss_pred CCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccccc-ccccCCcccEEeecCCCccccc-hhhccCCcc
Q 000962 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLP-NSICNLYNL 639 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L 639 (1208)
+.|+.|.+. .+.+..+.+..|.++++|++|+|++|.++.++. .|.++++|++|+|++|.+..+| ..+.++++|
T Consensus 28 ~~l~~L~ls-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECT-----TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCccEEECC-----CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 457777776 444555555567888888999998888886654 6888888999999988888765 568888889
Q ss_pred cEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCcee
Q 000962 640 QTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLH 719 (1208)
Q Consensus 640 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~ 719 (1208)
++|++++|.+....+..+..+++|++|++++|.+..+ .+|..++.+++|++|++.++. ........+..+.+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~------ 174 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ------ 174 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHT------
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhh------
Confidence 9999888875544444688888899999888866431 367788888888888887642 22111112221111
Q ss_pred eCCccccccccccccCcccCcc-eEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCC
Q 000962 720 ISKLENAVNGGEAKLSEKESLH-KLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGR 798 (1208)
Q Consensus 720 l~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 798 (1208)
+..+. .|++++|......+ ......+|+.|+++++....+|..+. ..
T Consensus 175 -----------------L~~l~l~L~ls~n~l~~~~~--------------~~~~~~~L~~L~L~~n~l~~~~~~~~-~~ 222 (276)
T 2z62_A 175 -----------------MPLLNLSLDLSLNPMNFIQP--------------GAFKEIRLKELALDTNQLKSVPDGIF-DR 222 (276)
T ss_dssp -----------------CTTCCEEEECCSSCCCEECT--------------TSSCSCCEEEEECCSSCCSCCCTTTT-TT
T ss_pred -----------------ccccceeeecCCCcccccCc--------------cccCCCcccEEECCCCceeecCHhHh-cc
Confidence 11222 56666665432111 12223479999999887778877643 56
Q ss_pred CCceeEEEEeCcCCCC
Q 000962 799 LQNLVSLTLKGCTNCR 814 (1208)
Q Consensus 799 l~~L~~L~L~~~~~~~ 814 (1208)
+++|+.|+|++|.+..
T Consensus 223 l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCSCCEEECCSSCBCC
T ss_pred cccccEEEccCCcccc
Confidence 8999999999997754
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=8.7e-14 Score=152.97 Aligned_cols=194 Identities=26% Similarity=0.263 Sum_probs=152.3
Q ss_pred cccccccEEEecCCCCCCCCCCC--CCCCeEEEeccCCCCCCCCC-ccccccceeeecCCCCCccccCCCCCCCCCEEee
Q 000962 924 HSFQTLLEMKAINCPKLRGLPQI--FAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGTLVRAIPETSSLNFLIL 1000 (1208)
Q Consensus 924 ~~~~~L~~L~l~~c~~L~~l~~~--~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l 1000 (1208)
..+++++.+++.++ .++.+|.. ..++.|++++|.+....+.. ..+++|++|++++|.....+.. ..+++|+.|++
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cccCCccEEECCCC-CCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 35667788877663 46666642 46889999999865544433 4578999999999986655543 78899999999
Q ss_pred cCCCCCCcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEEecCCC
Q 000962 1001 SKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSG 1077 (1208)
Q Consensus 1001 s~n~~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~ 1077 (1208)
++|.+. .+|. +..+++|++|++++|. ++.++. ..+.++++|++|++++|. ++.+|...+. ++|+.|++++|.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~-l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~- 159 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPL-GALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNN- 159 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSC-CCCCCS-STTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCc-CcccCH-HHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCc-
Confidence 999765 5554 6889999999999998 666664 578999999999999984 7777765543 899999999986
Q ss_pred CcccCCcCCCCCCCCCCceeecCCCCCCCCCCC-CCCCccceEeccCChh
Q 000962 1078 LKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED-GLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1078 l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~ 1126 (1208)
++.+|. ..+..+++|+.|++++| .++.+|.. ...++|+.|++++||.
T Consensus 160 l~~l~~-~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPA-GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCH-HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 777876 35788999999999999 68889876 3346899999998874
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=3.6e-13 Score=154.14 Aligned_cols=289 Identities=12% Similarity=0.089 Sum_probs=173.8
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC-----CChHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-----YDLPR 244 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~ 244 (1208)
+..||||+++++++.+ +.. +++.|+|++|+|||||++++++. ... ..+|+.+... .+...
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHH
Confidence 4579999999999998 642 48999999999999999999973 322 2578887643 34444
Q ss_pred HHHHHHHHccc-------------C-------C---C------CCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc---c
Q 000962 245 ILKGMIEFHSK-------------M-------E---Q------STSSISLLETRLLEFLTGQRFLLVLDDVWNEDY---R 292 (1208)
Q Consensus 245 ~~~~i~~~~~~-------------~-------~---~------~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~---~ 292 (1208)
.+..+.+.+.. . . . .......+.+.+.+.-+ ++++|||||++..+. .
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 44444433210 0 0 0 01234455555544322 489999999965321 2
Q ss_pred ChHHHHHhhhCCCCCcEEEEecCChhHHhhh-----------CC-CCcEeCCCCChhHHHHHHHHHhccCCCCCccccch
Q 000962 293 KWEPLQQLLKQGHKGSRVLVTSRTARVSQIM-----------GI-RSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQ 360 (1208)
Q Consensus 293 ~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~ 360 (1208)
+|..+...+.+...+.++|+|+|.......+ +. ...+++.+|+.+|+.+++.......+.. ..
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-----~~ 230 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-----FK 230 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-----CC
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-----CC
Confidence 3433333333223467899999986532211 11 2478899999999999998754321111 11
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHhhhccCCChhHHHHH-HhhcccccccCCCCCCCCccch-hccc--cCCChhHHHHH
Q 000962 361 NLEAIGREIVGKCKGLPLAVKAIAGFLRKYDDVNKWRKI-LSSDIWELEEGSSNGPHILPPL-KLSY--DHLPPFLKHCF 436 (1208)
Q Consensus 361 ~~~~~~~~i~~~c~g~PLai~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~~~~i~~~l-~~sy--~~L~~~~k~cf 436 (1208)
. . ..|++.++|+|+++..++..+....+...|..- .+..... +...+ .+.+ ..|++..+..+
T Consensus 231 ~---~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~l~~~~~~~l 296 (357)
T 2fna_A 231 D---Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL----------ILKEFENFLHGREIARKRYLNIM 296 (357)
T ss_dssp C---H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----------HHHHHHHHHTTCGGGHHHHHHHH
T ss_pred c---H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH----------HHHHHHHHhhccccccHHHHHHH
Confidence 1 1 789999999999999998876543333334221 1110000 00011 1111 16888999999
Q ss_pred HHhccCCCCCccChHHHHHHHH-HccccccCCCCCCccHHHHHHHHHHHHHhccCcccccCCCcceEE-EhhhHHHH
Q 000962 437 SLCSIFPKSYAFDKAEMVKFWM-AEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSNIDDKVKYQ-MHDLFHDL 511 (1208)
Q Consensus 437 l~~s~fp~~~~i~~~~li~~w~-aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~-mhdlv~~~ 511 (1208)
..+|. +. +...+....- ..|. ..+ ......+++.|++.++|.... ..|. .|++++++
T Consensus 297 ~~la~---g~--~~~~l~~~~~~~~g~--------~~~-~~~~~~~L~~L~~~gli~~~~----~~y~f~~~~~~~~ 355 (357)
T 2fna_A 297 RTLSK---CG--KWSDVKRALELEEGI--------EIS-DSEIYNYLTQLTKHSWIIKEG----EKYCPSEPLISLA 355 (357)
T ss_dssp HHHTT---CB--CHHHHHHHHHHHHCS--------CCC-HHHHHHHHHHHHHTTSEEESS----SCEEESSHHHHHH
T ss_pred HHHHc---CC--CHHHHHHHHHHhcCC--------CCC-HHHHHHHHHHHHhCCCEEecC----CEEEecCHHHHHh
Confidence 99998 22 4444433211 1121 011 455678999999999997653 3466 47888765
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=1.7e-14 Score=154.35 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=67.6
Q ss_pred cccEEecCCCCCccccc-ccccCCcccEEeecCCC-ccccch-hhccCCcccEEecCC-Cccccccc-hhccccccccee
Q 000962 592 YLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTE-IKVLPN-SICNLYNLQTLKLIG-CIWIMELP-KDLANLVKLRNL 666 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~~~~~lp-~~i~~L~~L~~L 666 (1208)
.|++|+|++|.++.+|. .|.++++|++|++++|. ++.+|. .|.++++|++|++++ |. +..+| ..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence 67888888888887765 57788888888888886 777765 678888888888887 55 44444 467778888888
Q ss_pred ecccccccccccCCccCCCCCcCc
Q 000962 667 ELEEMFWFKCSTLPAGIGKLTNLH 690 (1208)
Q Consensus 667 ~l~~n~~~~~~~lp~~i~~l~~L~ 690 (1208)
++++|.+. .+|. ++.+++|+
T Consensus 111 ~l~~n~l~---~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 111 GIFNTGLK---MFPD-LTKVYSTD 130 (239)
T ss_dssp EEEEECCC---SCCC-CTTCCBCC
T ss_pred eCCCCCCc---cccc-cccccccc
Confidence 88887553 3454 55555554
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1.1e-15 Score=173.40 Aligned_cols=255 Identities=18% Similarity=0.138 Sum_probs=173.7
Q ss_pred CCceEEecccCCCccchhhhhHHHHhccC--CcccEEecCCCCCcccccccccCCcccEEeecCCCccc--cchhhccCC
Q 000962 562 KKLRTFLVPSFGEHLKDFGRALDKIFHQL--KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKV--LPNSICNLY 637 (1208)
Q Consensus 562 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~ 637 (1208)
..++.+.+. .+.+. +..+..+ +.+++|++++|.+...+..+..+++|++|+|++|.+.. +|..+.+++
T Consensus 47 ~~~~~l~l~-----~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 47 SLWQTLDLT-----GKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TTSSEEECT-----TCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred hhheeeccc-----cccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 346777776 22222 3445666 89999999999999777778889999999999999873 888899999
Q ss_pred cccEEecCCCccccccchhcccccccceeecccc-cccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCC
Q 000962 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM-FWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTG 716 (1208)
Q Consensus 638 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n-~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 716 (1208)
+|++|++++|.+....|..+..+++|++|++++| .+.. ..+|..+..+++|++|++.++...++..
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~------------ 185 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKH------------ 185 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHH------------
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCcChHH------------
Confidence 9999999999877788888999999999999998 3431 1355667778888888887652222110
Q ss_pred ceeeCCccccccccccccCccc-CcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeC-C-CCCCcc
Q 000962 717 KLHISKLENAVNGGEAKLSEKE-SLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYF-G-NSLPQW 793 (1208)
Q Consensus 717 ~L~l~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~-~~~p~~ 793 (1208)
....+..++ +|+.|++++|... -....+...+..+++|+.|+++++. . ...+..
T Consensus 186 -------------~~~~~~~l~~~L~~L~l~~~~~~----------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 186 -------------VQVAVAHVSETITQLNLSGYRKN----------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp -------------HHHHHHHSCTTCCEEECCSCGGG----------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred -------------HHHHHHhcccCCCEEEeCCCccc----------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 111233445 6777777765310 0113344455567788888888665 2 344555
Q ss_pred cccCCCCceeEEEEeCcCCCCcc---ccCCCCCccEEEEeCCCCceecCC--CCCC-ccccccccCCCCCCCccCccCCC
Q 000962 794 MRDGRLQNLVSLTLKGCTNCRIL---SLGQLSSLRVLNIKGMLELEKWPN--DEDC-RFLGRLKISNCPRLNELPECMPN 867 (1208)
Q Consensus 794 ~~~~~l~~L~~L~L~~~~~~~~~---~l~~l~~L~~L~L~~~~~~~~~~~--~~~~-~~L~~L~l~~~~~l~~~~~~~~~ 867 (1208)
+ ..+++|+.|++++|...... .++.+++|++|++++| ++. +..+ ..+..|++++|...+..|..+.+
T Consensus 243 l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 243 F--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp G--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred H--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 5 55788899999888633222 5778889999999887 221 1112 33666667777666666654443
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=6.7e-14 Score=152.78 Aligned_cols=173 Identities=24% Similarity=0.300 Sum_probs=80.0
Q ss_pred cccccccEEEecCCCC--CCCCCCCCCCCeEEEeccCCCCCCCCCccccccceeeecCCCCCccc-cCCCCCCCCCEEee
Q 000962 924 HSFQTLLEMKAINCPK--LRGLPQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLV-RAIPETSSLNFLIL 1000 (1208)
Q Consensus 924 ~~~~~L~~L~l~~c~~--L~~l~~~~~l~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~l 1000 (1208)
..++.|+.|.+.++.- +..+..++++++|++++|.+.+ ++....+++|++|++++|.....+ ..+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3455566666655431 1122233445555555554322 232333455555555555533222 22445555555555
Q ss_pred cCCCCCCcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEEecCCC
Q 000962 1001 SKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSG 1077 (1208)
Q Consensus 1001 s~n~~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~ 1077 (1208)
++|.+....+. +..+++|++|++++|. ++.++. ..+..+++|++|++++|. ++.++...+. ++|++|++++|.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~- 192 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPK-GVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ- 192 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCc-cCccCH-HHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-
Confidence 55544433332 3455555555555554 333332 234555555555555552 3344332221 455555555554
Q ss_pred CcccCCcCCCCCCCCCCceeecCCC
Q 000962 1078 LKSLGPRGTLKSLNSLKDFYIEDCP 1102 (1208)
Q Consensus 1078 l~~lp~~~~l~~l~~L~~L~l~~c~ 1102 (1208)
++.+++ ..+..+++|+.|++++|+
T Consensus 193 l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 LKSVPD-GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCccCH-HHHhCCcCCCEEEccCCC
Confidence 333332 134555555555555554
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=1.1e-13 Score=157.22 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=72.6
Q ss_pred cEEecCCCCCcccccccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccch-hcccccccce-eeccc
Q 000962 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRN-LELEE 670 (1208)
Q Consensus 594 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~-L~l~~ 670 (1208)
++++.++++++++|..+ ..++++|+|++|+|+.+|. .|.++++|++|+|++|.+.+.+|. .|.++++|.+ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777888888888766 3678888888888888876 578888888888888886676765 4577877765 44555
Q ss_pred ccccccccC-CccCCCCCcCcCCCceEe
Q 000962 671 MFWFKCSTL-PAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 671 n~~~~~~~l-p~~i~~l~~L~~L~l~~~ 697 (1208)
|.+ ..+ |..+..+++|++|++.++
T Consensus 90 N~l---~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 90 NNL---LYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp TTC---CEECTTSBCCCTTCCEEEEEEE
T ss_pred Ccc---cccCchhhhhcccccccccccc
Confidence 544 334 345677888888887775
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=6.7e-13 Score=150.72 Aligned_cols=235 Identities=20% Similarity=0.182 Sum_probs=135.9
Q ss_pred cEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecCC--CCCCccccccccC
Q 000962 778 EELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWPN--DEDCRFLGRLKIS 853 (1208)
Q Consensus 778 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~l~ 853 (1208)
+.++.+++..+.+|..+ .+++++|+|++|.+.... .|.++++|++|+|++|...+.++. +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~---------- 77 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN---------- 77 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS----------
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc----------
Confidence 34555556667778655 467888888888877665 578888888888888876555441 111
Q ss_pred CCCCCCccCccCCCcCEEEEecccccccCCCCCchhheeeecccccccccccccccccCCCCCCcccccccccccccEEE
Q 000962 854 NCPRLNELPECMPNLTVMKIKKCCSLKALPVTPFLQFLILVDNLELENWNERCLRVIPTSDNGQGQHLLLHSFQTLLEMK 933 (1208)
Q Consensus 854 ~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 933 (1208)
++++..+.+.++.+++.++.-
T Consensus 78 -----------L~~l~~~l~~~~N~l~~l~~~------------------------------------------------ 98 (350)
T 4ay9_X 78 -----------LPKLHEIRIEKANNLLYINPE------------------------------------------------ 98 (350)
T ss_dssp -----------CTTCCEEEEEEETTCCEECTT------------------------------------------------
T ss_pred -----------chhhhhhhcccCCcccccCch------------------------------------------------
Confidence 223333333333333322210
Q ss_pred ecCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCc--cccccceeeecCCC-CCccc-cCCCCC-CCCCEEeecCCCCCCc
Q 000962 934 AINCPKLRGLPQIFAPQKLEISGCDLLSTLPNSE--FSQRLQLLALEGCP-DGTLV-RAIPET-SSLNFLILSKISNLDS 1008 (1208)
Q Consensus 934 l~~c~~L~~l~~~~~l~~L~l~~~~~l~~lp~~~--~~~~L~~L~L~~~~-~~~~~-~~l~~l-~~L~~L~ls~n~~~~~ 1008 (1208)
.+..+.+|++|++++|.+.. +|... ....+..|++.++. ....+ ..+..+ ..|+.|++++|.+...
T Consensus 99 --------~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 99 --------AFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp --------SBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred --------hhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 00111122455555554322 22221 12344555555543 22222 223333 3567777777765433
Q ss_pred CCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCC
Q 000962 1009 FPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLK 1088 (1208)
Q Consensus 1009 ~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~ 1088 (1208)
.+......+|+.|++++|..++.+|. ..|.++++|++|++++| .++.+|...+ .+|+.|.+.+|..++.+|. +.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N-~l~~lp~~~~-~~L~~L~~l~~~~l~~lP~---l~ 243 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRT-RIHSLPSYGL-ENLKKLRARSTYNLKKLPT---LE 243 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTS-CCCCCCSSSC-TTCCEEECTTCTTCCCCCC---TT
T ss_pred ChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCC-CcCccChhhh-ccchHhhhccCCCcCcCCC---ch
Confidence 33334456677777777666777775 45677778888888777 4777776443 5777777777777777775 67
Q ss_pred CCCCCCceeecC
Q 000962 1089 SLNSLKDFYIED 1100 (1208)
Q Consensus 1089 ~l~~L~~L~l~~ 1100 (1208)
++++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 777777777754
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=7.5e-13 Score=144.31 Aligned_cols=191 Identities=26% Similarity=0.287 Sum_probs=138.0
Q ss_pred ccEEEecCCCCCCCCCCC--CCCCeEEEeccCCCCCCCCC-ccccccceeeecCCCCCcccc-CCCCCCCCCEEeecCCC
Q 000962 929 LLEMKAINCPKLRGLPQI--FAPQKLEISGCDLLSTLPNS-EFSQRLQLLALEGCPDGTLVR-AIPETSSLNFLILSKIS 1004 (1208)
Q Consensus 929 L~~L~l~~c~~L~~l~~~--~~l~~L~l~~~~~l~~lp~~-~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~ls~n~ 1004 (1208)
.+.+++++ ..++.+|.. ..+++|++++|.+....+.. ..+++|++|++++|.....+. .+..+++|++|++++|.
T Consensus 18 ~~~l~~~~-~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 18 KNSVDCSS-KKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTEEECTT-SCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEEccC-CCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 34455443 235555542 35788999888755433322 457889999999988555554 35778899999999987
Q ss_pred CCCcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc--CCCCEEEEecCCCCccc
Q 000962 1005 NLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSL 1081 (1208)
Q Consensus 1005 ~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~l 1081 (1208)
+....+. +..+++|++|++++|. ++.++. ..+..+++|++|++++|. ++.++...+. ++|++|++++|. ++.+
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 172 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQ-LKSLPP-RVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ-LKRV 172 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCC
T ss_pred CCcCCHhHcccccCCCEEECCCCc-cCeeCH-HHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCc-CcEe
Confidence 6554443 5788899999999987 555654 467889999999999984 6677665443 789999998886 5666
Q ss_pred CCcCCCCCCCCCCceeecCCCCCCCCCCC--CCCCccceEeccCChh
Q 000962 1082 GPRGTLKSLNSLKDFYIEDCPLLQSFPED--GLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1082 p~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~~ 1126 (1208)
+. ..+..+++|++|++++| .++.+|.. ...++|+.|++++||.
T Consensus 173 ~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 173 PE-GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CT-TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred Ch-hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 55 25788899999999998 67777765 3357899999988874
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=4.3e-15 Score=168.48 Aligned_cols=248 Identities=17% Similarity=0.178 Sum_probs=167.7
Q ss_pred eeEEEEEcccCCCCccccccCC--CCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCc-c-cccccccCCc
Q 000962 540 TRHVSLLCKHVEKPALSVVENS--KKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT-V-LPDSVEELKL 615 (1208)
Q Consensus 540 ~r~lsl~~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~-lp~~i~~l~~ 615 (1208)
.+++.+..+.+. ...+..+ ++++.|.+. .+.+....+. +..+++|++|+|++|.+. . +|..+..+++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~-----~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCP-----RSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECT-----TCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcC-----Cccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 567777666554 2334455 788999887 3333333333 457899999999999987 3 8888999999
Q ss_pred ccEEeecCCCcc-ccchhhccCCcccEEecCCCcccc--ccchhcccccccceeecccc-cccccccCCccCCCCC-cCc
Q 000962 616 LRYLDLSRTEIK-VLPNSICNLYNLQTLKLIGCIWIM--ELPKDLANLVKLRNLELEEM-FWFKCSTLPAGIGKLT-NLH 690 (1208)
Q Consensus 616 Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~n-~~~~~~~lp~~i~~l~-~L~ 690 (1208)
|++|+|++|.+. ..|..++++++|++|++++|..+. .+|..+.++++|++|++++| .+.. ..+|..+..++ +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-KHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-HHHHHHHHHSCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-HHHHHHHHhcccCCC
Confidence 999999999988 678899999999999999994344 47777899999999999999 6642 23556677888 999
Q ss_pred CCCceEec-ccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhh
Q 000962 691 NLHVFRVG-SKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLE 769 (1208)
Q Consensus 691 ~L~l~~~~-~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1208)
+|++.++. ..+.. .....+..+++|+.|++++|.... ...+.
T Consensus 199 ~L~l~~~~~~~~~~-------------------------~l~~~~~~~~~L~~L~l~~~~~l~------------~~~~~ 241 (336)
T 2ast_B 199 QLNLSGYRKNLQKS-------------------------DLSTLVRRCPNLVHLDLSDSVMLK------------NDCFQ 241 (336)
T ss_dssp EEECCSCGGGSCHH-------------------------HHHHHHHHCTTCSEEECTTCTTCC------------GGGGG
T ss_pred EEEeCCCcccCCHH-------------------------HHHHHHhhCCCCCEEeCCCCCcCC------------HHHHH
Confidence 99887653 11111 111123345567777777664210 11223
Q ss_pred ccCCCCCCcEEEEeeeCCCCCCc---ccccCCCCceeEEEEeCcCCCCccccCCC-CCccEEEEeCCCCceecC
Q 000962 770 DLQPHPNLEELQIFNYFGNSLPQ---WMRDGRLQNLVSLTLKGCTNCRILSLGQL-SSLRVLNIKGMLELEKWP 839 (1208)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~p~---~~~~~~l~~L~~L~L~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~ 839 (1208)
.+..+++|+.|+++++. ...+. .+ ..+++|+.|++++| .... .+..+ .+|..|++++|...+..+
T Consensus 242 ~l~~l~~L~~L~l~~~~-~~~~~~~~~l--~~~~~L~~L~l~~~-i~~~-~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCY-DIIPETLLEL--GEIPTLKTLQVFGI-VPDG-TLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGGCTTCCEEECTTCT-TCCGGGGGGG--GGCTTCCEEECTTS-SCTT-CHHHHHHHSTTSEESCCCSCCTTC
T ss_pred HHhCCCCCCEeeCCCCC-CCCHHHHHHH--hcCCCCCEEeccCc-cCHH-HHHHHHhhCcceEEecccCccccC
Confidence 45566788888888664 12222 23 45889999999988 3222 22222 236666688777665554
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=2.4e-15 Score=173.95 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=71.3
Q ss_pred ccCCCCceEEecccCCCccchhhhh----HHHHhccCCcccEEecCCCCCc----cccccc-------ccCCcccEEeec
Q 000962 558 VENSKKLRTFLVPSFGEHLKDFGRA----LDKIFHQLKYLRLLDLSSSTLT----VLPDSV-------EELKLLRYLDLS 622 (1208)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~i~----~lp~~i-------~~l~~Lr~L~L~ 622 (1208)
+..+++|+.|.+. .+.+... +...|..+++|++|+|++|.+. .+|..+ ..+++|++|+|+
T Consensus 28 l~~~~~L~~L~L~-----~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 28 LLEDDSVKEIVLS-----GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHHCSCCCEEECT-----TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HhcCCCccEEECC-----CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3455666666665 2333222 2334556677777777765443 233333 566677777777
Q ss_pred CCCccc-----cchhhccCCcccEEecCCCccccc----cchhcccc---------cccceeecccccccccccCC---c
Q 000962 623 RTEIKV-----LPNSICNLYNLQTLKLIGCIWIME----LPKDLANL---------VKLRNLELEEMFWFKCSTLP---A 681 (1208)
Q Consensus 623 ~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i~~L---------~~L~~L~l~~n~~~~~~~lp---~ 681 (1208)
+|.+.. +|..+.++++|++|+|++|.+... ++..+..+ ++|++|++++|.+.. ..+| .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHHHHHHH
Confidence 776664 566666677777777776664322 22223333 666677766665431 1122 2
Q ss_pred cCCCCCcCcCCCceE
Q 000962 682 GIGKLTNLHNLHVFR 696 (1208)
Q Consensus 682 ~i~~l~~L~~L~l~~ 696 (1208)
.+..+++|++|++.+
T Consensus 182 ~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHCTTCCEEECCS
T ss_pred HHHhCCCcCEEECcC
Confidence 334445555555443
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=2.4e-15 Score=173.87 Aligned_cols=242 Identities=17% Similarity=0.101 Sum_probs=150.3
Q ss_pred HHHHhccCCcccEEecCCCCCcc-----cccccccCCcccEEeecCCCcc----ccchhh-------ccCCcccEEecCC
Q 000962 583 LDKIFHQLKYLRLLDLSSSTLTV-----LPDSVEELKLLRYLDLSRTEIK----VLPNSI-------CNLYNLQTLKLIG 646 (1208)
Q Consensus 583 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~ 646 (1208)
+...+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34567889999999999999873 4556889999999999998655 345544 7899999999999
Q ss_pred Ccccc----ccchhcccccccceeecccccccccc--cCCccCCCC---------CcCcCCCceEecccCCCChhhhcCC
Q 000962 647 CIWIM----ELPKDLANLVKLRNLELEEMFWFKCS--TLPAGIGKL---------TNLHNLHVFRVGSKSGYRIEELKEL 711 (1208)
Q Consensus 647 ~~~~~----~lp~~i~~L~~L~~L~l~~n~~~~~~--~lp~~i~~l---------~~L~~L~l~~~~~~~~~~~~~l~~l 711 (1208)
|.+.. .+|..+.++++|++|++++|.+.... .++..+..+ ++|++|++.++..... .+..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~---- 178 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-SMKE---- 178 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-GHHH----
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-HHHH----
Confidence 98665 47888999999999999999764221 223333334 6777777765422111 1110
Q ss_pred CCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhh-ccCCCCCCcEEEEeeeCC---
Q 000962 712 PYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLE-DLQPHPNLEELQIFNYFG--- 787 (1208)
Q Consensus 712 ~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~--- 787 (1208)
....+..+++|+.|++++|.... .....+.. .+..+++|+.|++++|..
T Consensus 179 ------------------l~~~l~~~~~L~~L~L~~n~l~~---------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 179 ------------------WAKTFQSHRLLHTVKMVQNGIRP---------EGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp ------------------HHHHHHHCTTCCEEECCSSCCCH---------HHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred ------------------HHHHHHhCCCcCEEECcCCCCCH---------hHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence 01123344566667666664320 00111222 555666777777775544
Q ss_pred --CCCCcccccCCCCceeEEEEeCcCCCCcc------cc--CCCCCccEEEEeCCCCce----ecC-CC-CCCccccccc
Q 000962 788 --NSLPQWMRDGRLQNLVSLTLKGCTNCRIL------SL--GQLSSLRVLNIKGMLELE----KWP-ND-EDCRFLGRLK 851 (1208)
Q Consensus 788 --~~~p~~~~~~~l~~L~~L~L~~~~~~~~~------~l--~~l~~L~~L~L~~~~~~~----~~~-~~-~~~~~L~~L~ 851 (1208)
..+|.++ ..+++|+.|+|++|.+.... .+ +.+++|++|+|++|.... .++ .+ .+++.|+.|+
T Consensus 232 g~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 232 GSSALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHG--GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHH--ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 3445555 45677777777777665541 22 446777777777775444 122 11 2245555555
Q ss_pred cCCCCCC
Q 000962 852 ISNCPRL 858 (1208)
Q Consensus 852 l~~~~~l 858 (1208)
+++|+..
T Consensus 310 l~~N~l~ 316 (386)
T 2ca6_A 310 LNGNRFS 316 (386)
T ss_dssp CTTSBSC
T ss_pred ccCCcCC
Confidence 5555543
No 99
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=1.5e-13 Score=152.68 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=148.3
Q ss_pred cccccccccEEEecCCCCCCCC---CCCCCCCeEEEeccCCCCCCCCCccccccceeeecCCCCCccccCCCCCCCCCEE
Q 000962 922 LLHSFQTLLEMKAINCPKLRGL---PQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFL 998 (1208)
Q Consensus 922 ~~~~~~~L~~L~l~~c~~L~~l---~~~~~l~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L 998 (1208)
....+++|+.|.+.+|. ++.+ ..+.+|+.|++++|.+.. ++....+++|++|++++|..... ..+..+++|+.|
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTL 112 (308)
T ss_dssp CHHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEE
T ss_pred cHHHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCC-ChhHccCCCCCEEEccCCcCCCc-hhhcCCCCCCEE
Confidence 34568899999998874 3433 456788999999997554 44356678999999999985444 368889999999
Q ss_pred eecCCCCCCcCCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCcCCCCEEEEecCCCC
Q 000962 999 ILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGL 1078 (1208)
Q Consensus 999 ~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l 1078 (1208)
++++|.+.. ++.+..+++|+.|++++|. ++.++ .+..+++|+.|++++|. +..++.-.-.++|++|++++|. +
T Consensus 113 ~l~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l 185 (308)
T 1h6u_A 113 DLTSTQITD-VTPLAGLSNLQVLYLDLNQ-ITNIS---PLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNK-I 185 (308)
T ss_dssp ECTTSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG---GGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-C
T ss_pred ECCCCCCCC-chhhcCCCCCCEEECCCCc-cCcCc---cccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCc-c
Confidence 999997554 5668889999999999997 66665 37889999999999984 5556542233889999999986 6
Q ss_pred cccCCcCCCCCCCCCCceeecCCCCCCCCCCCCCCCccceEeccCChh
Q 000962 1079 KSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1079 ~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~~ 1126 (1208)
+.++. +..+++|++|++++| .++.++.-..+++|+.|++++|+.
T Consensus 186 ~~~~~---l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 186 SDISP---LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCGG---GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred CcChh---hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCee
Confidence 66664 788999999999999 566666545668999999999875
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=1.3e-13 Score=151.81 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=73.9
Q ss_pred ccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceee
Q 000962 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 667 (1208)
..+++|+.|++++|.+..+|. +..+++|++|+|++|.++.+|. +.++++|++|++++|. +..+| .+..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 356778888888888887764 7888888888888888887776 8888888888888887 44454 478888888888
Q ss_pred cccccccccccCCccCCCCCcCcCCCceE
Q 000962 668 LEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1208)
Q Consensus 668 l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1208)
+++|.+..+ ..+..+++|+.|++.+
T Consensus 119 L~~n~i~~~----~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 119 LEHNGISDI----NGLVHLPQLESLYLGN 143 (291)
T ss_dssp CTTSCCCCC----GGGGGCTTCCEEECCS
T ss_pred CCCCcCCCC----hhhcCCCCCCEEEccC
Confidence 888765432 3455566666665544
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=9.4e-13 Score=141.77 Aligned_cols=173 Identities=20% Similarity=0.201 Sum_probs=122.5
Q ss_pred CcccEEecCCCCCcccccccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceeecc
Q 000962 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 669 (1208)
...++++++++.++.+|..+. .+|++|+|++|.+..++. .+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999999998776 689999999999997755 68999999999999998666666678999999999999
Q ss_pred cccccccccCC-ccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeec
Q 000962 670 EMFWFKCSTLP-AGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1208)
Q Consensus 670 ~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 748 (1208)
+|.+. .+| ..++.+++|++|++.++
T Consensus 92 ~n~l~---~~~~~~~~~l~~L~~L~L~~N--------------------------------------------------- 117 (251)
T 3m19_A 92 NNQLA---SLPLGVFDHLTQLDKLYLGGN--------------------------------------------------- 117 (251)
T ss_dssp TSCCC---CCCTTTTTTCTTCCEEECCSS---------------------------------------------------
T ss_pred CCccc---ccChhHhcccCCCCEEEcCCC---------------------------------------------------
Confidence 98664 333 34456666666665442
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCc-ccccCCCCceeEEEEeCcCCCCcc--ccCCCCCcc
Q 000962 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQ-WMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLR 825 (1208)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~ 825 (1208)
......+ ..+..+++|+.|+++++....+|. .+ ..+++|+.|+|++|.+.... .+..+++|+
T Consensus 118 ~l~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 118 QLKSLPS-------------GVFDRLTKLKELRLNTNQLQSIPAGAF--DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp CCCCCCT-------------TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCCCcCh-------------hHhccCCcccEEECcCCcCCccCHHHc--CcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 1110000 123345566666666555555555 34 45777777777777776655 566777777
Q ss_pred EEEEeCCCC
Q 000962 826 VLNIKGMLE 834 (1208)
Q Consensus 826 ~L~L~~~~~ 834 (1208)
+|+|++|+.
T Consensus 183 ~L~l~~N~~ 191 (251)
T 3m19_A 183 TITLFGNQF 191 (251)
T ss_dssp EEECCSCCB
T ss_pred EEEeeCCce
Confidence 777777753
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=1.7e-14 Score=164.81 Aligned_cols=248 Identities=13% Similarity=0.066 Sum_probs=136.6
Q ss_pred chhhhhHHHHhccCCcccEEecCCCCCcccc-----cccccCC-cccEEeecCCCcccc-chhhccC-----CcccEEec
Q 000962 577 KDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-----DSVEELK-LLRYLDLSRTEIKVL-PNSICNL-----YNLQTLKL 644 (1208)
Q Consensus 577 ~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L 644 (1208)
+.+.+.++.++...++|++|||++|.++..+ ..+..++ +|++|+|++|.+... +..+..+ ++|++|++
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 4455556666666666888888888777554 4566777 788888888877754 4455554 77888888
Q ss_pred CCCccccccchhcc----cc-cccceeeccccccccccc--CCccCCC-CCcCcCCCceEecccCCCChhhhcCCCCCCC
Q 000962 645 IGCIWIMELPKDLA----NL-VKLRNLELEEMFWFKCST--LPAGIGK-LTNLHNLHVFRVGSKSGYRIEELKELPYLTG 716 (1208)
Q Consensus 645 ~~~~~~~~lp~~i~----~L-~~L~~L~l~~n~~~~~~~--lp~~i~~-l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 716 (1208)
++|.+....+..+. .+ ++|++|++++|.+..... +...+.. .++|++|++.++. ........+
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l-------- 158 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDEL-------- 158 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHH--------
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHH--------
Confidence 88775444444433 33 678888888776543210 0011223 2467777665532 111111111
Q ss_pred ceeeCCccccccccccccCcc-cCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCC-CCCcEEEEeeeCCCC-----
Q 000962 717 KLHISKLENAVNGGEAKLSEK-ESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPH-PNLEELQIFNYFGNS----- 789 (1208)
Q Consensus 717 ~L~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~----- 789 (1208)
...+... .+|+.|+|++|..... ....+...+... ++|+.|++++|..+.
T Consensus 159 --------------~~~l~~~~~~L~~L~Ls~n~l~~~---------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 159 --------------IQILAAIPANVNSLNLRGNNLASK---------NCAELAKFLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp --------------HHHHHTSCTTCCEEECTTSCGGGS---------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred --------------HHHHhcCCccccEeeecCCCCchh---------hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence 0111122 2566666666644311 111222334444 377777777555443
Q ss_pred CCcccccCCCCceeEEEEeCcCCCCcc------ccCCCCCccEEEEeCCCCc--------eecCCCCCCccccccccCCC
Q 000962 790 LPQWMRDGRLQNLVSLTLKGCTNCRIL------SLGQLSSLRVLNIKGMLEL--------EKWPNDEDCRFLGRLKISNC 855 (1208)
Q Consensus 790 ~p~~~~~~~l~~L~~L~L~~~~~~~~~------~l~~l~~L~~L~L~~~~~~--------~~~~~~~~~~~L~~L~l~~~ 855 (1208)
++..+. ...++|+.|+|++|.+.... .+..+++|++|+|++|... .....+..++.|+.+++++|
T Consensus 216 l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 216 LAYIFS-SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHH-HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHh-cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 333331 11347777777777766542 3566777888888777511 11112344556666666666
Q ss_pred CC
Q 000962 856 PR 857 (1208)
Q Consensus 856 ~~ 857 (1208)
+.
T Consensus 295 ~l 296 (362)
T 3goz_A 295 EI 296 (362)
T ss_dssp BC
T ss_pred cC
Confidence 54
No 103
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=2.7e-12 Score=148.27 Aligned_cols=287 Identities=15% Similarity=0.061 Sum_probs=180.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc--------cceeEEEEecCCC-C
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH--------FESRMWVCVTVDY-D 241 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~~~~-~ 241 (1208)
..++||+.+++++..++.... .....+.+.|+|++|+||||+|+.+++. .... ....+|+.+.... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCC
Confidence 679999999999988775421 1123568999999999999999999983 2221 2346788887777 7
Q ss_pred hHHHHHHHHHHcccCCCC--CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccC-hHH-HHHhhhCCCCCcEEEEecCCh
Q 000962 242 LPRILKGMIEFHSKMEQS--TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK-WEP-LQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 242 ~~~~~~~i~~~~~~~~~~--~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~-~~~-l~~~l~~~~~gs~iivTtR~~ 317 (1208)
...++..++..+...... ......+...+.+.+..++.+|||||++...... .+. +...+... .+.+||+||+..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 888888888877432211 3344666777888887777799999996532221 233 33333323 678899999865
Q ss_pred hH----Hhhh--CCCCcEeCCCCChhHHHHHHHHHhcc---CCCCCccccchhhHHHHHHHHHhcC---CChH-HHHHHH
Q 000962 318 RV----SQIM--GIRSPYLLEYLPEDQCWSIFKKIAFN---QGNFSSRMQQQNLEAIGREIVGKCK---GLPL-AVKAIA 384 (1208)
Q Consensus 318 ~v----~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~---~~~~~~~~~~~~~~~~~~~i~~~c~---g~PL-ai~~~~ 384 (1208)
.. .... .....+++++++.++..++|...+.. ... . ..+..+.|++.++ |.|- |+..+.
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-----~---~~~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT-----Y---DDEILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS-----C---CSHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC-----c---CHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 32 1111 11238999999999999999988642 111 1 1345667777777 8876 444433
Q ss_pred hhh--c---cCCChhHHHHHHhhcccccccCCCCCCCCccchhccccCCChhHHHHHHHhccCCCCCccChHHHHH--HH
Q 000962 385 GFL--R---KYDDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPKSYAFDKAEMVK--FW 457 (1208)
Q Consensus 385 ~~l--~---~~~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~--~w 457 (1208)
... . ..-+.+.+..++.... ...+..+++.|+++.|..+..++.. .. ..++.+ .-
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~al~~~-~~----~~~~~~~~~~ 308 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYE-------------QERLIEAVKALPFHYKLALRSLIES-ED----VMSAHKMYTD 308 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHTC-CB----HHHHHHHHHH
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHh-------------cchHHHHHHcCCHHHHHHHHHHHHh-cc----cChHHHHHHH
Confidence 322 1 1235667776665421 1235567788998888888777761 11 011211 11
Q ss_pred HHccc-cccCCCCCCccHHHHHHHHHHHHHhccCccccc
Q 000962 458 MAEAL-IQSRGGGRQEREEEIGIEYFDELLGRSFFQSSN 495 (1208)
Q Consensus 458 ~aeg~-i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 495 (1208)
+++.+ +. ..+ ......+++.|..++++....
T Consensus 309 ~~~~~g~~------~~~-~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 309 LCNKFKQK------PLS-YRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHTTCC------CCC-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHcCCC------CCC-HHHHHHHHHHHHhCCCEEEEe
Confidence 22221 11 111 456778999999999998753
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=2.9e-12 Score=137.89 Aligned_cols=169 Identities=23% Similarity=0.311 Sum_probs=123.5
Q ss_pred CeEEEeccCCCCCCCCCccccccceeeecCCCCCc-cccCCCCCCCCCEEeecCCCCCCcCCC-CCCCCCcceEEEcCCC
Q 000962 950 QKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGT-LVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCK 1027 (1208)
Q Consensus 950 ~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~~~~-~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~L~~L~L~~c~ 1027 (1208)
++++++++. +..+|.. ..++++.|++++|.... .+..+..+++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 17 ~~l~~~~~~-l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKS-LDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCC-CSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCC-ccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 445555554 3345543 23678888888888433 344678888999999999877665554 5788899999999887
Q ss_pred CCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCC--cCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCC
Q 000962 1028 DLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL--PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQ 1105 (1208)
Q Consensus 1028 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~--~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~ 1105 (1208)
++.++. ..+..+++|++|++++| .++.++...+ .++|++|++++|. ++.+++ ..+..+++|++|++++| .++
T Consensus 95 -l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~ 168 (251)
T 3m19_A 95 -LASLPL-GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPA-GAFDKLTNLQTLSLSTN-QLQ 168 (251)
T ss_dssp -CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCS
T ss_pred -ccccCh-hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCc-CCccCH-HHcCcCcCCCEEECCCC-cCC
Confidence 555654 46788899999999988 4667766544 3789999998885 666665 35888899999999998 566
Q ss_pred CCCCC--CCCCccceEeccCChh
Q 000962 1106 SFPED--GLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1106 ~lp~~--~~~~sL~~L~l~~c~~ 1126 (1208)
.+|.. ..+++|+.|++++|+.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCHHHHhCCCCCCEEEeeCCce
Confidence 77654 3457899999998875
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=6.1e-13 Score=148.38 Aligned_cols=192 Identities=14% Similarity=0.141 Sum_probs=82.2
Q ss_pred ccccEEEecCCCCCCCC------CCCCCCCeEEEeccCCCCCCCCC-----ccccccceeeecCCCCCc-cccCCCCCCC
Q 000962 927 QTLLEMKAINCPKLRGL------PQIFAPQKLEISGCDLLSTLPNS-----EFSQRLQLLALEGCPDGT-LVRAIPETSS 994 (1208)
Q Consensus 927 ~~L~~L~l~~c~~L~~l------~~~~~l~~L~l~~~~~l~~lp~~-----~~~~~L~~L~L~~~~~~~-~~~~l~~l~~ 994 (1208)
+.|+.|++.+|.-.... ....+|++|++++|.+.+..+.. ..+++|++|++++|.... .+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 34555555555422222 22334555555555544332211 123455555555555222 2234445555
Q ss_pred CCEEeecCCCCCCc--CC-C--CCCCCCcceEEEcCCCCCcCCccc--CCCCCCCCcCeEeecCCCCCccCCCC--CC--
Q 000962 995 LNFLILSKISNLDS--FP-R--WPNLPGLKALYIRDCKDLVSLSGE--GALQSLTSLNLLSIRGCPKLETLPDE--GL-- 1063 (1208)
Q Consensus 995 L~~L~ls~n~~~~~--~~-~--~~~l~~L~~L~L~~c~~l~~~~~~--~~l~~l~~L~~L~l~~~~~l~~lp~~--~~-- 1063 (1208)
|++|++++|.+.+. ++ . +..+++|++|++++|. ++.++.. ..+.++++|++|++++|.....+|.. .+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555544321 11 1 1345555555555554 3322210 01234455555555555322222211 11
Q ss_pred cCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCCCCCCccceEeccCCh
Q 000962 1064 PTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNCP 1125 (1208)
Q Consensus 1064 ~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c~ 1125 (1208)
+++|++|++++|. ++.+|. .+. ++|++|++++| .++.+|....+++|+.|++++|+
T Consensus 250 ~~~L~~L~Ls~N~-l~~lp~--~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAG-LEQVPK--GLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSC-CCSCCS--CCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCC-CCchhh--hhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 1355555555544 334444 332 45555555555 34444433333455555555554
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=4.4e-13 Score=161.88 Aligned_cols=101 Identities=24% Similarity=0.253 Sum_probs=71.4
Q ss_pred ccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceee
Q 000962 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 667 (1208)
..+..|+.|++++|.+..+| .+..|++|++|+|++|.+..+|. +.++++|+.|+|++|. +..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 45677777888888777776 47778888888888888777766 7778888888888776 34444 677777888888
Q ss_pred cccccccccccCCccCCCCCcCcCCCceE
Q 000962 668 LEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1208)
Q Consensus 668 l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1208)
|++|.+.. + ..+..+++|+.|++.+
T Consensus 116 Ls~N~l~~---l-~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 116 LEHNGISD---I-NGLVHLPQLESLYLGN 140 (605)
T ss_dssp CTTSCCCC---C-GGGGGCTTCSEEECCS
T ss_pred ecCCCCCC---C-ccccCCCccCEEECCC
Confidence 87775543 2 3455666666666544
No 107
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=8.2e-12 Score=144.56 Aligned_cols=292 Identities=13% Similarity=0.073 Sum_probs=181.0
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc------cceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH------FESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~~~~~~~~ 244 (1208)
..++||+.+++++..++...- .......+.|+|++|+||||+|+.+++. .... -...+|+.+....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 679999999999999885431 1133567899999999999999999983 3221 12457888888888888
Q ss_pred HHHHHHHHcccCCCC-CCcHHHHHHHHHHHh--cCCceEEEEecCCCCCcc--ChHHHHHhhhCC-----CCCcEEEEec
Q 000962 245 ILKGMIEFHSKMEQS-TSSISLLETRLLEFL--TGQRFLLVLDDVWNEDYR--KWEPLQQLLKQG-----HKGSRVLVTS 314 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~~~~~--~~~~l~~~l~~~-----~~gs~iivTt 314 (1208)
++..++..++..... ......+...+.+.+ .+++.+|||||++..... ..+.+...+... ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 899999888654332 334566666777776 356889999999653222 223333333211 3456788888
Q ss_pred CChh--------HHhhhCCCCcEeCCCCChhHHHHHHHHHhcc---CCCCCccccchhhHHHHHHHHHhcC---CCh-HH
Q 000962 315 RTAR--------VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFN---QGNFSSRMQQQNLEAIGREIVGKCK---GLP-LA 379 (1208)
Q Consensus 315 R~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~---~~~~~~~~~~~~~~~~~~~i~~~c~---g~P-La 379 (1208)
+... +...+. ...+.+.+++.++..+++...+.. ... .. .++.+.+++.++ |.| .+
T Consensus 175 ~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-----~~---~~~~~~l~~~~~~~~G~~r~~ 245 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGV-----LD---PDVVPLCAALAAREHGDARRA 245 (387)
T ss_dssp SCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTT-----BC---SSHHHHHHHHHHSSSCCHHHH
T ss_pred CCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCC-----CC---HHHHHHHHHHHHHhccCHHHH
Confidence 7652 222211 137889999999999999987532 111 11 244567777777 999 33
Q ss_pred HHHHHhhhc-----c--CCChhHHHHHHhhcccccccCCCCCCCCccchhccccCCChhHHHHHHHhc-cCCCCCccChH
Q 000962 380 VKAIAGFLR-----K--YDDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCS-IFPKSYAFDKA 451 (1208)
Q Consensus 380 i~~~~~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~~~~i~~~ 451 (1208)
+.++..+.. . .-+.+.+..++..... ..+.-++..|+.+.+..+..++ ++-....+...
T Consensus 246 ~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~ 312 (387)
T 2v1u_A 246 LDLLRVAGEIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTG 312 (387)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 333333221 1 1245666666553211 1345567889998888777666 44322244445
Q ss_pred HHHHHHHH--ccc-cccCCCCCCccHHHHHHHHHHHHHhccCccccc
Q 000962 452 EMVKFWMA--EAL-IQSRGGGRQEREEEIGIEYFDELLGRSFFQSSN 495 (1208)
Q Consensus 452 ~li~~w~a--eg~-i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 495 (1208)
++.+.... +.. +. .. ....+..+++.|...+++....
T Consensus 313 ~~~~~~~~~~~~~~~~------~~-~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 313 EIYERYKELTSTLGLE------HV-TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHHHHHHHTTCC------CC-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhcCCC------CC-CHHHHHHHHHHHHhCCCeEEEe
Confidence 44443322 111 11 11 1566788999999999998753
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=3.6e-13 Score=138.91 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=70.5
Q ss_pred ccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceee
Q 000962 588 HQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLE 667 (1208)
Q Consensus 588 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 667 (1208)
..+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+.++++|++|++++|.+....|..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34567778888888777777 5777788888888887666654 577777888888887776555677777777777777
Q ss_pred cccccccccccCCccCCCCCcCcCCCce
Q 000962 668 LEEMFWFKCSTLPAGIGKLTNLHNLHVF 695 (1208)
Q Consensus 668 l~~n~~~~~~~lp~~i~~l~~L~~L~l~ 695 (1208)
+++|.+.. ..|..++.+++|++|++.
T Consensus 119 Ls~n~i~~--~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 119 ISHSAHDD--SILTKINTLPKVNSIDLS 144 (197)
T ss_dssp CCSSBCBG--GGHHHHTTCSSCCEEECC
T ss_pred ecCCccCc--HhHHHHhhCCCCCEEEcc
Confidence 77775532 233444444444444443
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=1.2e-12 Score=156.12 Aligned_cols=180 Identities=19% Similarity=0.203 Sum_probs=133.7
Q ss_pred CcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeeccc
Q 000962 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEE 670 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 670 (1208)
.+|++|+|++|.++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|.+ ..+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECCC
Confidence 489999999999999998774 89999999999999999 5689999999999985 44887 665 999999999
Q ss_pred ccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCC
Q 000962 671 MFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNN 750 (1208)
Q Consensus 671 n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 750 (1208)
|.+. .+|. .+++|+.|++.+|.. ++ ++ . .+++|+.|+|++|..
T Consensus 130 N~l~---~lp~---~l~~L~~L~Ls~N~l-~~--------lp-------------------~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 130 NQLT---MLPE---LPALLEYINADNNQL-TM--------LP-------------------E---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp SCCS---CCCC---CCTTCCEEECCSSCC-SC--------CC-------------------C---CCTTCCEEECCSSCC
T ss_pred CcCC---CCCC---cCccccEEeCCCCcc-Cc--------CC-------------------C---cCCCcCEEECCCCCC
Confidence 9764 4666 578888888876421 10 00 0 235778888888765
Q ss_pred CCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCce-------eEEEEeCcCCCCcc-ccCCCC
Q 000962 751 RDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNL-------VSLTLKGCTNCRIL-SLGQLS 822 (1208)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~~-~l~~l~ 822 (1208)
.. .| . +. ++|+.|++++|....+|. +. .+| +.|+|++|.+.... .+..++
T Consensus 173 ~~-lp-------------~-l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 173 TF-LP-------------E-LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLD 230 (571)
T ss_dssp SC-CC-------------C-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSC
T ss_pred CC-cc-------------h-hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCC
Confidence 43 21 1 22 688888888777778887 42 156 88888888877655 566788
Q ss_pred CccEEEEeCCCCceec
Q 000962 823 SLRVLNIKGMLELEKW 838 (1208)
Q Consensus 823 ~L~~L~L~~~~~~~~~ 838 (1208)
+|+.|+|++|...+.+
T Consensus 231 ~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRI 246 (571)
T ss_dssp TTEEEECCSSSCCHHH
T ss_pred CCCEEEeeCCcCCCcC
Confidence 8888888888765443
No 110
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=3.9e-11 Score=138.84 Aligned_cols=301 Identities=13% Similarity=0.045 Sum_probs=184.4
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccccc-ceeEEEEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF-ESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 249 (1208)
..++||+.+++++..++.....+.....+.+.|+|++|+||||||+.+++. ..... ..++|+.+....+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 579999999999999886521011122348999999999999999999973 33221 245778877777788888888
Q ss_pred HHHcccCCCC-CCcHHHHHHHHHHHhc--CCceEEEEecCCCCCccChHHHHHhhhCCC----CCcEEEEecCChhHHhh
Q 000962 250 IEFHSKMEQS-TSSISLLETRLLEFLT--GQRFLLVLDDVWNEDYRKWEPLQQLLKQGH----KGSRVLVTSRTARVSQI 322 (1208)
Q Consensus 250 ~~~~~~~~~~-~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~v~~~ 322 (1208)
+..++..... ......+...+.+.+. +++.+|||||++..+......+...+.... .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 8887654322 3345566666666654 668899999997654444455555443211 46778888876643322
Q ss_pred hC-------CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhc---------CCChHHHHHHHh-
Q 000962 323 MG-------IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKC---------KGLPLAVKAIAG- 385 (1208)
Q Consensus 323 ~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c---------~g~PLai~~~~~- 385 (1208)
+. ....+.+.+++.++..+++...+...... ..-..+....|++.+ +|.|-.+..+..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-----GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-----TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 11 12369999999999999998876421100 011245677888888 788754433332
Q ss_pred hhc-----cC--CChhHHHHHHhhcccccccCCCCCCCCccchhccccCCChhHHHHHHHhccCC---CCCccChHHHHH
Q 000962 386 FLR-----KY--DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFP---KSYAFDKAEMVK 455 (1208)
Q Consensus 386 ~l~-----~~--~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp---~~~~i~~~~li~ 455 (1208)
... .. -+.+....+.... ....+.-.+..|+.+.+.++..++.+. .+-.+....+..
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~-------------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEV-------------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHH-------------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHH-------------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 221 11 1233333333321 012234456778988888887777654 221455666666
Q ss_pred HHHHccccccCCCCCCccHHHHHHHHHHHHHhccCccccc
Q 000962 456 FWMAEALIQSRGGGRQEREEEIGIEYFDELLGRSFFQSSN 495 (1208)
Q Consensus 456 ~w~aeg~i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 495 (1208)
.+... ....+ ....+ ......++++|..+++|....
T Consensus 317 ~~~~~--~~~~~-~~~~~-~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 317 SYKIV--CEEYG-ERPRV-HSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHH--HHHTT-CCCCC-HHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHH--HHHcC-CCCCC-HHHHHHHHHHHHhCCCeEEee
Confidence 55331 00000 00111 445678999999999998754
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.37 E-value=1.6e-12 Score=143.07 Aligned_cols=164 Identities=16% Similarity=0.239 Sum_probs=110.2
Q ss_pred CeEEEeccCCCCCCCCCccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcCCCCC
Q 000962 950 QKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDL 1029 (1208)
Q Consensus 950 ~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l 1029 (1208)
+.|++++|.+ ..++....+++|++|++++|.....+. +..+++|+.|++++|.+. .++.+..+++|+.|++++|. +
T Consensus 49 ~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~-i 124 (291)
T 1h6t_A 49 DQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNG-I 124 (291)
T ss_dssp CEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEECTTSC-C
T ss_pred cEEEccCCCc-ccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CChhhccCCCCCEEECCCCc-C
Confidence 5555555542 334444556778888888777544444 777788888888887643 35566777888888888876 5
Q ss_pred cCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCC
Q 000962 1030 VSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPE 1109 (1208)
Q Consensus 1030 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~ 1109 (1208)
..++ .+..+++|+.|++++|. ++.++.-.-.++|++|++++|. ++.+++ +..+++|+.|++++| .++.+|.
T Consensus 125 ~~~~---~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~L~~N-~i~~l~~ 195 (291)
T 1h6t_A 125 SDIN---GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKN-HISDLRA 195 (291)
T ss_dssp CCCG---GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCBCGG
T ss_pred CCCh---hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCc-cccchh---hcCCCccCEEECCCC-cCCCChh
Confidence 4443 46677888888888874 4444322223778888888775 555554 777888888888887 5666765
Q ss_pred CCCCCccceEeccCChh
Q 000962 1110 DGLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1110 ~~~~~sL~~L~l~~c~~ 1126 (1208)
-..+++|+.|++++|+.
T Consensus 196 l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GTTCTTCSEEEEEEEEE
T ss_pred hccCCCCCEEECcCCcc
Confidence 45567888888888764
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=2.4e-12 Score=153.45 Aligned_cols=173 Identities=26% Similarity=0.307 Sum_probs=140.6
Q ss_pred cccEEEecCCCCCCCCCC--CCCCCeEEEeccCCCCCCCCCccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCC
Q 000962 928 TLLEMKAINCPKLRGLPQ--IFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISN 1005 (1208)
Q Consensus 928 ~L~~L~l~~c~~L~~l~~--~~~l~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~ 1005 (1208)
+++.|++.++. ++.+|. ..+++.|++++|.+. .+| ..+++|++|++++|.....+. +.. +|+.|++++|.+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLPPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC
Confidence 78899998874 666664 357899999999865 777 567999999999998666666 654 999999999986
Q ss_pred CCcCCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcC
Q 000962 1006 LDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRG 1085 (1208)
Q Consensus 1006 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~ 1085 (1208)
.+ +|. .+++|+.|++++|. ++.+|. .+++|++|++++|. ++.+|. +.++|+.|++++|. ++.+|.
T Consensus 133 ~~-lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N~-L~~lp~--l~~~L~~L~Ls~N~-L~~lp~-- 197 (571)
T 3cvr_A 133 TM-LPE--LPALLEYINADNNQ-LTMLPE-----LPTSLEVLSVRNNQ-LTFLPE--LPESLEALDVSTNL-LESLPA-- 197 (571)
T ss_dssp SC-CCC--CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCC--
T ss_pred CC-CCC--cCccccEEeCCCCc-cCcCCC-----cCCCcCEEECCCCC-CCCcch--hhCCCCEEECcCCC-CCchhh--
Confidence 65 777 78999999999998 666763 67899999999995 777887 55999999999986 778875
Q ss_pred CCCCCCCC-------CceeecCCCCCCCCCCC-CCCCccceEeccCChh
Q 000962 1086 TLKSLNSL-------KDFYIEDCPLLQSFPED-GLPENLQHLVIQNCPL 1126 (1208)
Q Consensus 1086 ~l~~l~~L-------~~L~l~~c~~l~~lp~~-~~~~sL~~L~l~~c~~ 1126 (1208)
+.. +| +.|++++| .++.+|.. ..+++|+.|++++|+.
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred -HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 333 66 99999999 78889975 4478999999999976
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=2.9e-13 Score=154.64 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=157.9
Q ss_pred EEcccCCCCccccccCCCCceEEecccCCCccchhhhhHH----HHhccCC-cccEEecCCCCCccc-ccccccC-----
Q 000962 545 LLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALD----KIFHQLK-YLRLLDLSSSTLTVL-PDSVEEL----- 613 (1208)
Q Consensus 545 l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~l----- 613 (1208)
+..+.+...........++|+.|.+. .+.+..... ..|..++ +|++|+|++|.++.. +..+..+
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls-----~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLS-----LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECT-----TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccchHHHHHHHhCCCCceEEEcc-----CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 33444444433444555669999887 344444433 6778888 899999999998843 5556665
Q ss_pred CcccEEeecCCCccccc-hh----hccC-CcccEEecCCCccccccchhc----cc-ccccceeecccccccccc--cCC
Q 000962 614 KLLRYLDLSRTEIKVLP-NS----ICNL-YNLQTLKLIGCIWIMELPKDL----AN-LVKLRNLELEEMFWFKCS--TLP 680 (1208)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp-~~----i~~L-~~L~~L~L~~~~~~~~lp~~i----~~-L~~L~~L~l~~n~~~~~~--~lp 680 (1208)
++|++|+|++|.+...+ .. +..+ ++|++|++++|.+....+..+ .. .++|++|++++|.+...+ .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 89999999999988543 33 4445 899999999998544444343 33 358999999998765321 333
Q ss_pred ccCCCCC-cCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcc-cCcceEEeeecCCCCCCCCCC
Q 000962 681 AGIGKLT-NLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEK-ESLHKLVFEWSNNRDSSPQSQ 758 (1208)
Q Consensus 681 ~~i~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~ 758 (1208)
..+..++ +|++|++.++. ........+. ..+... .+|+.|+|++|.....
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~----------------------~~l~~~~~~L~~L~Ls~N~i~~~----- 211 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNN-LASKNCAELA----------------------KFLASIPASVTSLDLSANLLGLK----- 211 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC-GGGSCHHHHH----------------------HHHHTSCTTCCEEECTTSCGGGS-----
T ss_pred HHHhcCCccccEeeecCCC-CchhhHHHHH----------------------HHHHhCCCCCCEEECCCCCCChh-----
Confidence 4444454 78888776642 2222111111 112233 3677888877754321
Q ss_pred CCccchHHHhhccCC-CCCCcEEEEeeeCCCCCCc-----ccccCCCCceeEEEEeCcCCCCcc---------ccCCCCC
Q 000962 759 DVSGDEERLLEDLQP-HPNLEELQIFNYFGNSLPQ-----WMRDGRLQNLVSLTLKGCTNCRIL---------SLGQLSS 823 (1208)
Q Consensus 759 ~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~-----~~~~~~l~~L~~L~L~~~~~~~~~---------~l~~l~~ 823 (1208)
....+...+.. +++|+.|++++|.....+. .+ ..+++|+.|+|++|.+.... .+..+++
T Consensus 212 ----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~--~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 212 ----SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK--DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp ----CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT--TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred ----HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH--hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 11223344443 3588888888766655443 22 45788999999988733221 4667888
Q ss_pred ccEEEEeCCCCc
Q 000962 824 LRVLNIKGMLEL 835 (1208)
Q Consensus 824 L~~L~L~~~~~~ 835 (1208)
|++|++++|...
T Consensus 286 L~~LdL~~N~l~ 297 (362)
T 3goz_A 286 IILVDKNGKEIH 297 (362)
T ss_dssp EEEECTTSCBCC
T ss_pred eEEEecCCCcCC
Confidence 899999888643
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=1.4e-12 Score=136.82 Aligned_cols=152 Identities=21% Similarity=0.206 Sum_probs=118.7
Q ss_pred EEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccc-ccccccCCcccEEe
Q 000962 542 HVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLD 620 (1208)
Q Consensus 542 ~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~ 620 (1208)
.+....+.+..++.. -.+.++.|.+. .+.+..+.+..|..+++|++|+|++|.++.+ |..|.++++|++|+
T Consensus 15 ~v~c~~~~l~~iP~~---l~~~l~~L~l~-----~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTN---LPETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp EEECTTSCCSSCCSS---CCTTCCEEECC-----SSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred EEEcCCCCcCcCCCc---cCcCCCEEECC-----CCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 445555555555532 22678888887 4556666667788999999999999999965 77899999999999
Q ss_pred ecCCCccccchh-hccCCcccEEecCCCccccccchhcccccccceeecccccccccccCC-ccCCCCCcCcCCCceEec
Q 000962 621 LSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLP-AGIGKLTNLHNLHVFRVG 698 (1208)
Q Consensus 621 L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 698 (1208)
|++|.|+.+|.. |.++++|++|+|++|.+....|..+..+++|++|+|++|.+. .+| ..+..+++|+.|++.++.
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ---TIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC---EECHHHHhCCCCCCEEEeCCCC
Confidence 999999998875 688999999999999866666778899999999999999764 344 457888999999988765
Q ss_pred ccCCCC
Q 000962 699 SKSGYR 704 (1208)
Q Consensus 699 ~~~~~~ 704 (1208)
....+.
T Consensus 164 ~~c~c~ 169 (220)
T 2v9t_B 164 FICDCH 169 (220)
T ss_dssp EECSGG
T ss_pred cCCCCc
Confidence 443333
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=8.3e-13 Score=142.79 Aligned_cols=167 Identities=25% Similarity=0.232 Sum_probs=104.7
Q ss_pred cCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 589 QLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 589 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
.+..+..++++++.++.++ .+..+.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 3555667777777777776 5777888888888888888777 67788888888888876 444554 777888888888
Q ss_pred ccccccccccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeec
Q 000962 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWS 748 (1208)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 748 (1208)
++|.+.. +|.... ++|+.|++.++
T Consensus 93 ~~N~l~~---l~~~~~--~~L~~L~L~~N--------------------------------------------------- 116 (263)
T 1xeu_A 93 NRNRLKN---LNGIPS--ACLSRLFLDNN--------------------------------------------------- 116 (263)
T ss_dssp CSSCCSC---CTTCCC--SSCCEEECCSS---------------------------------------------------
T ss_pred CCCccCC---cCcccc--CcccEEEccCC---------------------------------------------------
Confidence 8775533 332111 45555544432
Q ss_pred CCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCccccCCCCCccEEE
Q 000962 749 NNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLN 828 (1208)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~ 828 (1208)
.... +..+..+++|+.|++++|....+| .+ ..+++|+.|+|++|.+.....+..+++|+.|+
T Consensus 117 ~l~~---------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l--~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 117 ELRD---------------TDSLIHLKNLEILSIRNNKLKSIV-ML--GFLSKLEVLDLHGNEITNTGGLTRLKKVNWID 178 (263)
T ss_dssp CCSB---------------SGGGTTCTTCCEEECTTSCCCBCG-GG--GGCTTCCEEECTTSCCCBCTTSTTCCCCCEEE
T ss_pred ccCC---------------ChhhcCcccccEEECCCCcCCCCh-HH--ccCCCCCEEECCCCcCcchHHhccCCCCCEEe
Confidence 1110 012333445555555544444444 23 44677777777777666555666777777777
Q ss_pred EeCCC
Q 000962 829 IKGML 833 (1208)
Q Consensus 829 L~~~~ 833 (1208)
+++|.
T Consensus 179 l~~N~ 183 (263)
T 1xeu_A 179 LTGQK 183 (263)
T ss_dssp EEEEE
T ss_pred CCCCc
Confidence 77764
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=3.9e-12 Score=153.65 Aligned_cols=165 Identities=20% Similarity=0.242 Sum_probs=87.7
Q ss_pred cccccccEEEecCCCCCCC---CCCCCCCCeEEEeccCCCCCCCCCccccccceeeecCCCCCccccCCCCCCCCCEEee
Q 000962 924 HSFQTLLEMKAINCPKLRG---LPQIFAPQKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLIL 1000 (1208)
Q Consensus 924 ~~~~~L~~L~l~~c~~L~~---l~~~~~l~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l 1000 (1208)
..++.|+.|.+.+|. +.. +..+.+|+.|+|++|.+... +....+++|+.|+|++|..... ..+..+++|+.|+|
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-TTSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCC-hhhccCCCCCEEECcCCCCCCC-hhhccCCCCCEEEe
Confidence 445666666666553 222 22345556666666654332 2244456666666666653332 24555666666666
Q ss_pred cCCCCCCcCCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCcCCCCEEEEecCCCCcc
Q 000962 1001 SKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKS 1080 (1208)
Q Consensus 1001 s~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~ 1080 (1208)
++|.+.. ++.+..+++|+.|+|++|. +..+ ..+..+++|+.|+|++|. +..++.-.-.++|+.|+|++|. +..
T Consensus 117 s~N~l~~-l~~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-i~~ 189 (605)
T 1m9s_A 117 EHNGISD-INGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNH-ISD 189 (605)
T ss_dssp TTSCCCC-CGGGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCB
T ss_pred cCCCCCC-CccccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCC-CCC
Confidence 6665433 4445556666666666665 3333 245566666666666664 3333221222566666666654 444
Q ss_pred cCCcCCCCCCCCCCceeecCC
Q 000962 1081 LGPRGTLKSLNSLKDFYIEDC 1101 (1208)
Q Consensus 1081 lp~~~~l~~l~~L~~L~l~~c 1101 (1208)
++ .+..|++|+.|++++|
T Consensus 190 l~---~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 190 LR---ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CG---GGTTCTTCSEEECCSE
T ss_pred Ch---HHccCCCCCEEEccCC
Confidence 43 3556666666666665
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=1.4e-12 Score=135.90 Aligned_cols=129 Identities=20% Similarity=0.293 Sum_probs=64.0
Q ss_pred CceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccc-cccCCcc
Q 000962 538 PETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDS-VEELKLL 616 (1208)
Q Consensus 538 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L 616 (1208)
+.++++.+..+.+..+....+..+++|+.|.+. .+.+..+++..|..+++|++|+|++|.++.+|.. +.++++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-----GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECC-----CCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 345555555555554444444455555555554 2333333334445555555555555555544433 4555555
Q ss_pred cEEeecCCCccccchh-hccCCcccEEecCCCccccccchhcccccccceeecccc
Q 000962 617 RYLDLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM 671 (1208)
Q Consensus 617 r~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n 671 (1208)
++|+|++|.++.+|.. +.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 5555555555544442 455555555555555433222222455555555555555
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=134.88 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=118.9
Q ss_pred eEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhH-HHHhccCCcccEEecCCCCCccccc-ccccCCcccE
Q 000962 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRAL-DKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRY 618 (1208)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~ 618 (1208)
+.+.+..+.+..++.. -.+.++.|.+. .+.+..+. ...|..+++|++|+|++|.++.++. .|.++++|++
T Consensus 14 ~~l~~s~n~l~~iP~~---~~~~~~~L~L~-----~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH---IPQYTAELRLN-----NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCSEEECC-----SSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCcccCccC---CCCCCCEEEcC-----CCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 4667777777666532 23456778776 44454442 3457889999999999999997765 7999999999
Q ss_pred EeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEe
Q 000962 619 LDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 619 L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
|+|++|.++.+|. .|.++++|++|+|++|.+.+..|..+..+++|++|++++|.+.. ..|..+..+++|+.|++.++
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC--BCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE--ECHHHhcCCCCCCEEEecCc
Confidence 9999999998766 58999999999999998766668889999999999999997652 23678889999999998876
Q ss_pred cccCCCC
Q 000962 698 GSKSGYR 704 (1208)
Q Consensus 698 ~~~~~~~ 704 (1208)
.....+.
T Consensus 164 ~l~c~c~ 170 (220)
T 2v70_A 164 PFNCNCY 170 (220)
T ss_dssp CEECSGG
T ss_pred CCcCCCc
Confidence 5443333
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=2.6e-11 Score=140.24 Aligned_cols=296 Identities=13% Similarity=0.086 Sum_probs=176.7
Q ss_pred CCccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccccc---ceeEEEEecCCCChHHHH
Q 000962 170 TANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF---ESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~~ 246 (1208)
+..++||+.+++.+.+++.... .......+.|+|++|+||||||+.+++ .....+ ...+|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 3679999999999999887421 012356889999999999999999998 333332 246788877777777888
Q ss_pred HHHHHHcccCCCC-CCcHHHHHHHHHHHhc--CCceEEEEecCCCCC----ccChHHHHHhhhC-CCCCcEEEEecCChh
Q 000962 247 KGMIEFHSKMEQS-TSSISLLETRLLEFLT--GQRFLLVLDDVWNED----YRKWEPLQQLLKQ-GHKGSRVLVTSRTAR 318 (1208)
Q Consensus 247 ~~i~~~~~~~~~~-~~~~~~l~~~l~~~L~--~kr~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~iivTtR~~~ 318 (1208)
..++..++..... ..+...+...+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8888777543222 3345555666666664 458999999995421 1223344444422 234566788887654
Q ss_pred HHhhhC-------CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcC---CChHHH-HHHHhhh
Q 000962 319 VSQIMG-------IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCK---GLPLAV-KAIAGFL 387 (1208)
Q Consensus 319 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~PLai-~~~~~~l 387 (1208)
....+. ....+++++++.++..+++...+..... ...-..++.+.+++.++ |.|..+ .++....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-----PGVLPDNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-----SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 322111 1147899999999999999886531110 00112355667777777 998743 3333222
Q ss_pred c-----c--CCChhHHHHHHhhcccccccCCCCCCCCccchhccccCCChhHHHHHHHhccCCC-C-CccChHHHHHHH-
Q 000962 388 R-----K--YDDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCSIFPK-S-YAFDKAEMVKFW- 457 (1208)
Q Consensus 388 ~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~-~-~~i~~~~li~~w- 457 (1208)
. . .-+.+.+..++.... ...+.-.+..+|...+..+..++...+ + -.+...++.+..
T Consensus 250 ~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~ 316 (386)
T 2qby_A 250 EIAERMKDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYL 316 (386)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHH
Confidence 1 1 124455555554321 123455677889888888777764322 2 123333333322
Q ss_pred -HHccc-cccCCCCCCccHHHHHHHHHHHHHhccCcccc
Q 000962 458 -MAEAL-IQSRGGGRQEREEEIGIEYFDELLGRSFFQSS 494 (1208)
Q Consensus 458 -~aeg~-i~~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 494 (1208)
+++.+ +. ..+ ......+++.|...+++...
T Consensus 317 ~~~~~~g~~------~~~-~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 317 NICKKLGVE------AVT-QRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHTCC------CCC-HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHhcCCC------CCC-HHHHHHHHHHHHhCCCEEEE
Confidence 12211 11 111 34567889999999999764
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=8.9e-12 Score=128.39 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=69.0
Q ss_pred CeEEEeccCCCCCCCCCccccccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCC-CCCCCCCcceEEEcCCCC
Q 000962 950 QKLEISGCDLLSTLPNSEFSQRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFP-RWPNLPGLKALYIRDCKD 1028 (1208)
Q Consensus 950 ~~L~l~~~~~l~~lp~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~-~~~~l~~L~~L~L~~c~~ 1028 (1208)
++|++++|.+. .+|....+++|++|++++|. ...+..+..+++|++|++++|.+.+..+ .+..+++|++|++++|..
T Consensus 47 ~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 47 TYITLANINVT-DLTGIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CEEEEESSCCS-CCTTGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred cEEeccCCCcc-ChHHHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 44555554432 34433444555555555553 2223345555555555555555443222 345555555555555552
Q ss_pred CcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCcCCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCC
Q 000962 1029 LVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLPTSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFP 1108 (1208)
Q Consensus 1029 l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp 1108 (1208)
....+ ..+..+++|++|++++|. .++.+| .+..+++|+.|++++| .++.++
T Consensus 125 ~~~~~--~~l~~l~~L~~L~L~~n~-----------------------~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~ 175 (197)
T 4ezg_A 125 DDSIL--TKINTLPKVNSIDLSYNG-----------------------AITDIM---PLKTLPELKSLNIQFD-GVHDYR 175 (197)
T ss_dssp BGGGH--HHHTTCSSCCEEECCSCT-----------------------BCCCCG---GGGGCSSCCEEECTTB-CCCCCT
T ss_pred CcHhH--HHHhhCCCCCEEEccCCC-----------------------CccccH---hhcCCCCCCEEECCCC-CCcChH
Confidence 21122 234455555555555554 333333 2445555555555555 344444
Q ss_pred CCCCCCccceEeccCCh
Q 000962 1109 EDGLPENLQHLVIQNCP 1125 (1208)
Q Consensus 1109 ~~~~~~sL~~L~l~~c~ 1125 (1208)
.-..+++|+.|++++|+
T Consensus 176 ~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TGGGCSSCCEEEECBC-
T ss_pred HhccCCCCCEEEeeCcc
Confidence 32333555555555554
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=2.3e-11 Score=126.75 Aligned_cols=160 Identities=24% Similarity=0.244 Sum_probs=118.9
Q ss_pred ccccceeeecCCCCCcccc-CCCCCCCCCEEeecCCCCCCcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCe
Q 000962 969 SQRLQLLALEGCPDGTLVR-AIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNL 1046 (1208)
Q Consensus 969 ~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~ 1046 (1208)
.++|++|++++|.....+. .+..+++|+.|++++|.+....+. +..+++|++|++++|. ++.++. ..+..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCH-hHhcCccCCCE
Confidence 4678888888888544443 467889999999999876644333 5788999999999987 666664 45788999999
Q ss_pred EeecCCCCCccCCCCCCc--CCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCCCCCCccceEeccCC
Q 000962 1047 LSIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGLPENLQHLVIQNC 1124 (1208)
Q Consensus 1047 L~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~l~~c 1124 (1208)
|++++|. ++.++...+. ++|++|++++|. ++.++. ..+..+++|+.|++++|+.... +++|+.|+++.|
T Consensus 105 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~~~~------~~~l~~L~~~~n 175 (208)
T 2o6s_A 105 LALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWIN 175 (208)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSCCBCCC------TTTTHHHHHHHH
T ss_pred EEcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCH-HHhccCCCccEEEecCCCeecC------CCCHHHHHHHHH
Confidence 9999884 6667654333 789999999886 556665 2578899999999999965433 356888888877
Q ss_pred hhhHHhhhcCCCCCCCCCccccCCc
Q 000962 1125 PLLTQQCRDGEAEGPEWPKIKDIPD 1149 (1208)
Q Consensus 1125 ~~L~~~~~~~~~~g~~~~~i~~l~~ 1149 (1208)
.. .|.++..++.++.
T Consensus 176 ~~----------~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 176 KH----------SGVVRNSAGSVAP 190 (208)
T ss_dssp HC----------TTTBBCTTSSBCT
T ss_pred hC----------CceeeccCccccC
Confidence 66 7777777765554
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=4.5e-11 Score=126.29 Aligned_cols=126 Identities=25% Similarity=0.357 Sum_probs=62.2
Q ss_pred CCCCEEeecCCCCCCcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCC--cCCCCE
Q 000962 993 SSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL--PTSLKC 1069 (1208)
Q Consensus 993 ~~L~~L~ls~n~~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~--~~~L~~ 1069 (1208)
++|+.|++++|.+....|. +..+++|+.|+|++|. ++.++. ..+.++++|+.|++++| .++.++...+ .++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPV-GVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcCh-hhcccCCCcCEEECCCC-cCCccChhHhCcchhhCe
Confidence 4445555555444433332 3444555555555544 333332 23445555555555554 2444443222 145555
Q ss_pred EEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCC--CCCCccceEeccCCh
Q 000962 1070 LIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPED--GLPENLQHLVIQNCP 1125 (1208)
Q Consensus 1070 L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~--~~~~sL~~L~l~~c~ 1125 (1208)
|++++|. ++.+|. .+..+++|+.|++++| .++.+|.. ..+++|+.|++++||
T Consensus 117 L~Ls~N~-l~~lp~--~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 117 LFMCCNK-LTELPR--GIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSC-CCSCCT--TGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EeccCCc-ccccCc--ccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 5555544 445554 5556666666666666 45555543 223566666666665
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=8.6e-12 Score=131.81 Aligned_cols=145 Identities=23% Similarity=0.324 Sum_probs=110.7
Q ss_pred EEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccc-cccCCcccEEee
Q 000962 543 VSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDS-VEELKLLRYLDL 621 (1208)
Q Consensus 543 lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L 621 (1208)
+....+.+..++.. -.++|+.|.+. .+.+..+.+..|..+++|++|+|++|.++.+|.. |..+++|++|+|
T Consensus 24 v~c~~~~l~~ip~~---~~~~L~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 24 VDCRSKRHASVPAG---IPTNAQILYLH-----DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EECTTSCCSSCCSC---CCTTCSEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eEccCCCcCccCCC---CCCCCCEEEcC-----CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 44444445555432 23778888887 4556666667788899999999999999877754 688999999999
Q ss_pred cCCCccccchh-hccCCcccEEecCCCccccccchhcccccccceeecccccccccccCC-ccCCCCCcCcCCCceEecc
Q 000962 622 SRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLP-AGIGKLTNLHNLHVFRVGS 699 (1208)
Q Consensus 622 ~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp-~~i~~l~~L~~L~l~~~~~ 699 (1208)
++|.|+.+|.. +..+++|++|++++|. +..+|..+..+++|++|++++|.+. .+| ..+..+++|+.|++.++..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLK---SIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCC---ccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999888764 6889999999999887 5588888889999999999998664 444 4467888888888877543
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=1.1e-11 Score=129.95 Aligned_cols=134 Identities=21% Similarity=0.220 Sum_probs=117.2
Q ss_pred CCCceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccc-cccCC
Q 000962 536 CSPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDS-VEELK 614 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~ 614 (1208)
.++.++.+.+..+.+..+....+..+++|+.|.+. .+.+..+.+..|.++++|++|+|++|.++.+|.. |.+++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-----~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-----NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECC-----SSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC-----CCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 45678999999999988877778899999999997 5666667778899999999999999999988876 68999
Q ss_pred cccEEeecCCCcccc-chhhccCCcccEEecCCCccccccchhcccccccceeeccccccc
Q 000962 615 LLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWF 674 (1208)
Q Consensus 615 ~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~ 674 (1208)
+|++|+|++|.|+.+ |..|.++++|++|+|++|.+....+..+..+++|++|++++|.+.
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999999999977 567999999999999999865555556899999999999999764
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=6.5e-12 Score=155.96 Aligned_cols=155 Identities=23% Similarity=0.262 Sum_probs=99.3
Q ss_pred CCceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcc
Q 000962 537 SPETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLL 616 (1208)
Q Consensus 537 ~~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L 616 (1208)
.+.++++++..+.+...... .....+|+.+.+.......+.+ ..++..|..++.|++|+|++|.+..+|..+.++++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhh-HhhcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 34577888877766554322 2334445555544222222333 256778999999999999999999999999999999
Q ss_pred cEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceE
Q 000962 617 RYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFR 696 (1208)
Q Consensus 617 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~ 696 (1208)
++|+|++|.|+.+|..|++|++|++|+|++|.+ ..+|..|++|++|++|+|++|.+ ..+|..+++|++|++|++.+
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l---~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMV---TTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCSSCC---CCCCSSTTSCTTCCCEECTT
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCCCCC---CccChhhhcCCCccEEeCCC
Confidence 999999999999999999999999999999985 48999999999999999999965 57899999999999999987
Q ss_pred e
Q 000962 697 V 697 (1208)
Q Consensus 697 ~ 697 (1208)
|
T Consensus 326 N 326 (727)
T 4b8c_D 326 N 326 (727)
T ss_dssp S
T ss_pred C
Confidence 5
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=129.44 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=116.2
Q ss_pred CCCceeEEEEEcccCCCCc-cccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccccc-ccccC
Q 000962 536 CSPETRHVSLLCKHVEKPA-LSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEEL 613 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l 613 (1208)
.+..++++.+..+.+.... ...+..+++|+.|.+. .+.+..+.+..|.++++|++|+|++|.++.+|. .|.++
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-----~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-----NNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-----SSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-----CCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 3456789999999888763 3457899999999997 566666777789999999999999999997765 49999
Q ss_pred CcccEEeecCCCcccc-chhhccCCcccEEecCCCccccccchhcccccccceeeccccccc
Q 000962 614 KLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWF 674 (1208)
Q Consensus 614 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~ 674 (1208)
++|++|+|++|.|+.+ |..|.++++|++|+|++|.+.+..|..+..+++|++|++++|.+.
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999999999977 678999999999999999976666889999999999999999764
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=1.3e-11 Score=123.67 Aligned_cols=108 Identities=24% Similarity=0.239 Sum_probs=76.1
Q ss_pred HHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccc-cchhhccCCcccEEecCCCccccccc--hhccccc
Q 000962 585 KIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKV-LPNSICNLYNLQTLKLIGCIWIMELP--KDLANLV 661 (1208)
Q Consensus 585 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~ 661 (1208)
..+..+++|++|+|++|.++.+ ..+..+++|++|+|++|.+.. +|..+.++++|++|++++|. +..+| ..+..++
T Consensus 43 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 43 GLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLE 120 (168)
T ss_dssp SCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCS
T ss_pred HHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCC
Confidence 3456677777777777777766 667777777777777777776 66666677777777777776 44444 5677777
Q ss_pred ccceeecccccccccccCCc----cCCCCCcCcCCCceEe
Q 000962 662 KLRNLELEEMFWFKCSTLPA----GIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 662 ~L~~L~l~~n~~~~~~~lp~----~i~~l~~L~~L~l~~~ 697 (1208)
+|++|++++|.+. .+|. .+..+++|+.|++..+
T Consensus 121 ~L~~L~l~~N~l~---~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 121 CLKSLDLFNCEVT---NLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCCEEECCSSGGG---TSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEEeeCCcCc---chHHHHHHHHHhCccCcEecCCCC
Confidence 7777777777553 3444 5677777777777765
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=3.7e-11 Score=136.88 Aligned_cols=171 Identities=20% Similarity=0.198 Sum_probs=107.8
Q ss_pred cEEecCCCCCcccccccccCCcccEEeecCCCccccchh-hc-cCCcccEEecCCCccccccchhcccccccceeecccc
Q 000962 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNS-IC-NLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEM 671 (1208)
Q Consensus 594 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n 671 (1208)
++++++++.++.+|..+. ..+++|+|++|.|+.+|.. +. ++++|++|+|++|.+....|..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888888888887665 4578888888888877664 44 7888888888888755444456888888888888888
Q ss_pred cccccccCCc-cCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCC
Q 000962 672 FWFKCSTLPA-GIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNN 750 (1208)
Q Consensus 672 ~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 750 (1208)
.+. .+|. .+..+++|+.|++.++. .
T Consensus 99 ~l~---~~~~~~~~~l~~L~~L~L~~N~---------------------------------------------------i 124 (361)
T 2xot_A 99 HLH---TLDEFLFSDLQALEVLLLYNNH---------------------------------------------------I 124 (361)
T ss_dssp CCC---EECTTTTTTCTTCCEEECCSSC---------------------------------------------------C
T ss_pred cCC---cCCHHHhCCCcCCCEEECCCCc---------------------------------------------------c
Confidence 654 3333 35666666666654421 1
Q ss_pred CCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCccccc--CCCCceeEEEEeCcCCCCcc--ccCCCCC--c
Q 000962 751 RDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRD--GRLQNLVSLTLKGCTNCRIL--SLGQLSS--L 824 (1208)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~--~~l~~L~~L~L~~~~~~~~~--~l~~l~~--L 824 (1208)
.... ...+..+++|+.|+|++|....+|..+.. ..+++|+.|+|++|.+.... .+..++. |
T Consensus 125 ~~~~-------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 125 VVVD-------------RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CEEC-------------TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred cEEC-------------HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 0000 01233445666666665555566654421 24677777777777666544 4455555 3
Q ss_pred cEEEEeCCC
Q 000962 825 RVLNIKGML 833 (1208)
Q Consensus 825 ~~L~L~~~~ 833 (1208)
+.|+|++|+
T Consensus 192 ~~l~l~~N~ 200 (361)
T 2xot_A 192 NGLYLHNNP 200 (361)
T ss_dssp TTEECCSSC
T ss_pred ceEEecCCC
Confidence 666666664
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=8.7e-12 Score=122.00 Aligned_cols=105 Identities=23% Similarity=0.182 Sum_probs=64.4
Q ss_pred HhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccc-cchhhccCCcccEEecCCCccccc-cchhccccccc
Q 000962 586 IFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKV-LPNSICNLYNLQTLKLIGCIWIME-LPKDLANLVKL 663 (1208)
Q Consensus 586 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~L~~L 663 (1208)
.+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++++++|++|++++|.+.+. .|..+..+++|
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 455666677777777666655 556666677777777776665 566666667777777776663321 22566666677
Q ss_pred ceeecccccccccccCCc----cCCCCCcCcCCCc
Q 000962 664 RNLELEEMFWFKCSTLPA----GIGKLTNLHNLHV 694 (1208)
Q Consensus 664 ~~L~l~~n~~~~~~~lp~----~i~~l~~L~~L~l 694 (1208)
++|++++|.+. .+|. .++.+++|+.|++
T Consensus 116 ~~L~l~~N~l~---~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 116 KSLDLFNCEVT---NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTCGGG---GSTTHHHHHHHHCTTCCEETT
T ss_pred CEEeCcCCccc---chHHHHHHHHHHCCCcccccC
Confidence 77777666543 2333 3555666666654
No 130
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.17 E-value=8.1e-11 Score=126.63 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=121.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++||+..++.+..++.... ..+++.|+|++|+||||+|+.+++.......+.. ..+ ..... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~---~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPC---GVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCC---SCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCC---cccHH-HHHHh
Confidence 468999999999999997643 2348899999999999999999874221111100 000 00000 00111
Q ss_pred HHc-----ccCCCCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhH-
Q 000962 251 EFH-----SKMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV- 319 (1208)
Q Consensus 251 ~~~-----~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v- 319 (1208)
... ............+. .+.+.+ .+++.+||+||++..+...++.+...+.....+.++|+||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 00000001112222 222222 356799999999765556677787777766677889998876432
Q ss_pred Hh-hhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 320 SQ-IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 320 ~~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
.. .......+++++++.++..+++...+...+.. -..+..+.|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-------HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-------BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 11223578999999999999999887543321 113567889999999999988776544
No 131
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=5.8e-11 Score=128.27 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=111.6
Q ss_pred CceeEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCccc
Q 000962 538 PETRHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLR 617 (1208)
Q Consensus 538 ~~~r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr 617 (1208)
+.++++.+..+.+..++ .+..+++|+.|.+. .+.+..+.+ |..+++|++|+|++|.++.+|.... .+|+
T Consensus 41 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~-----~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLS-----HNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp TTCSEEECTTSCCCCCT--TGGGCTTCCEEECC-----SSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred CcCcEEECcCCCcccch--HHhhCCCCCEEECC-----CCccCCChh--hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 45677888777776655 37778889999887 444544444 7888999999999999888876443 8899
Q ss_pred EEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCcCcCCCceEe
Q 000962 618 YLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 618 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
+|+|++|.++.+| .++++++|++|++++|. +..+| .+..+++|++|++++|.+... ..+..+++|+.|++.++
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEEE
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCCC
Confidence 9999999888876 48889999999999887 45555 688889999999999876544 56778888888888876
Q ss_pred c
Q 000962 698 G 698 (1208)
Q Consensus 698 ~ 698 (1208)
.
T Consensus 183 ~ 183 (263)
T 1xeu_A 183 K 183 (263)
T ss_dssp E
T ss_pred c
Confidence 4
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=2.4e-11 Score=122.53 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=102.7
Q ss_pred ccCCCCceEEecccCCCccchhhhhHHHHhccC-CcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhh-cc
Q 000962 558 VENSKKLRTFLVPSFGEHLKDFGRALDKIFHQL-KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSI-CN 635 (1208)
Q Consensus 558 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~ 635 (1208)
+.++.+|+.|.+. .+.+..+ +. +..+ ++|++|+|++|.++.+ ..++.+++|++|+|++|.|+.+|..+ +.
T Consensus 15 ~~~~~~L~~L~l~-----~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLR-----GYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp EECTTSCEEEECT-----TSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCcCCceEEEee-----CCCCchh-HH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 5567788888876 3333333 22 3344 4899999999999987 67899999999999999999888655 89
Q ss_pred CCcccEEecCCCccccccch--hcccccccceeecccccccccccCCcc----CCCCCcCcCCCceEec
Q 000962 636 LYNLQTLKLIGCIWIMELPK--DLANLVKLRNLELEEMFWFKCSTLPAG----IGKLTNLHNLHVFRVG 698 (1208)
Q Consensus 636 L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~n~~~~~~~lp~~----i~~l~~L~~L~l~~~~ 698 (1208)
+++|++|++++|. +..+|. .+..+++|++|++++|.+. .+|.. ++.+++|+.|++..+.
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~---~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT---NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG---GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC---CcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999998 577776 7889999999999999664 55664 7888999999988764
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=6.2e-13 Score=159.70 Aligned_cols=199 Identities=14% Similarity=0.092 Sum_probs=113.6
Q ss_pred ccCCcccEEeecCCCccccchhhccCCcccEEecCCCc-------------cccccchhcccccccceee-ccccccccc
Q 000962 611 EELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCI-------------WIMELPKDLANLVKLRNLE-LEEMFWFKC 676 (1208)
Q Consensus 611 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~-------------~~~~lp~~i~~L~~L~~L~-l~~n~~~~~ 676 (1208)
..+++|+.|+|++|.++.+|.+|++|++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 45667777777777777777777777777777776553 2334444555555555555 3333221
Q ss_pred ccCCccCCCCCcCcCCCceEecccCCCChhhhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCC
Q 000962 677 STLPAGIGKLTNLHNLHVFRVGSKSGYRIEELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQ 756 (1208)
Q Consensus 677 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 756 (1208)
+|+.+.+..+. +..+. ...|+.|+|++|.... .|
T Consensus 424 -----------~L~~l~l~~n~------i~~l~---------------------------~~~L~~L~Ls~n~l~~-lp- 457 (567)
T 1dce_A 424 -----------DLRSKFLLENS------VLKME---------------------------YADVRVLHLAHKDLTV-LC- 457 (567)
T ss_dssp -----------HHHHHHHHHHH------HHHHH---------------------------HTTCSEEECTTSCCSS-CC-
T ss_pred -----------hhhhhhhhccc------ccccC---------------------------ccCceEEEecCCCCCC-Cc-
Confidence 11111111100 00000 0135566666554431 11
Q ss_pred CCCCccchHHHhhccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCccccCCCCCccEEEEeCCCCce
Q 000962 757 SQDVSGDEERLLEDLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQLSSLRVLNIKGMLELE 836 (1208)
Q Consensus 757 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 836 (1208)
.+..+++|+.|++++|....+|..+ +.+++|+.|+|++|.+.+...++.+++|++|+|++|....
T Consensus 458 -------------~~~~l~~L~~L~Ls~N~l~~lp~~~--~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 458 -------------HLEQLLLVTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp -------------CGGGGTTCCEEECCSSCCCCCCGGG--GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred -------------CccccccCcEeecCcccccccchhh--hcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCC
Confidence 2445567777777766666777766 5577777777777777664467777777777777776555
Q ss_pred e--cCCCCCCccccccccCCCCCCCccCc------cCCCcCEEE
Q 000962 837 K--WPNDEDCRFLGRLKISNCPRLNELPE------CMPNLTVMK 872 (1208)
Q Consensus 837 ~--~~~~~~~~~L~~L~l~~~~~l~~~~~------~~~~L~~L~ 872 (1208)
. +..+..++.|+.|++++|+..+..+. .+++|+.|+
T Consensus 523 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5 33556667777777777765443332 356666663
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=4.9e-11 Score=119.35 Aligned_cols=135 Identities=20% Similarity=0.178 Sum_probs=111.8
Q ss_pred CCCceeEEEEEcccCC--CCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcc-ccccccc
Q 000962 536 CSPETRHVSLLCKHVE--KPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTV-LPDSVEE 612 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~ 612 (1208)
.++.++++.+..+.+. .++ ..+..+++|+.|.+. .+.+..+ ..|..+++|++|+|++|.+.. +|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~-----~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLI-----NVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEE-----SSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCc-----CCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 4577899999998887 443 336788999999997 3444444 668899999999999999996 8888888
Q ss_pred CCcccEEeecCCCccccc--hhhccCCcccEEecCCCccccccch----hcccccccceeecccccccccccCCcc
Q 000962 613 LKLLRYLDLSRTEIKVLP--NSICNLYNLQTLKLIGCIWIMELPK----DLANLVKLRNLELEEMFWFKCSTLPAG 682 (1208)
Q Consensus 613 l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~n~~~~~~~lp~~ 682 (1208)
+++|++|+|++|.++.+| ..+.++++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~---~~~~~~ 165 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED---QEAPDS 165 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS---CBCCSS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh---hhcccc
Confidence 999999999999999887 789999999999999998 455555 789999999999999854 445543
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=5.9e-11 Score=135.18 Aligned_cols=146 Identities=21% Similarity=0.227 Sum_probs=110.0
Q ss_pred eEEEEEcccCCCCccccccCCCCceEEecccCCCccchhhhhHHHHhc-cCCcccEEecCCCCCcccc-cccccCCcccE
Q 000962 541 RHVSLLCKHVEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFH-QLKYLRLLDLSSSTLTVLP-DSVEELKLLRY 618 (1208)
Q Consensus 541 r~lsl~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~ 618 (1208)
+.+....+.+..++.. -.+.++.|.+. .|.+..+.+..|. .+++|++|+|++|.|+.++ ..|.++++|++
T Consensus 21 ~~l~c~~~~l~~iP~~---~~~~l~~L~Ls-----~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS---LPSYTALLDLS-----HNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSCCSS---CCTTCSEEECC-----SSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCccCcc---CCCCCCEEECC-----CCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 4566666666665532 23457788776 4556666666676 8899999999999998776 45889999999
Q ss_pred EeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccC----CCCCcCcCCC
Q 000962 619 LDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGI----GKLTNLHNLH 693 (1208)
Q Consensus 619 L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i----~~l~~L~~L~ 693 (1208)
|+|++|.|+.+|. .|.++++|++|+|++|.+....|..+..+++|++|+|++|.+ ..+|..+ ..+++|+.|+
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI---SRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---CSCCGGGTC----CTTCCEEE
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC---CeeCHHHhcCcccCCcCCEEE
Confidence 9999999988766 588899999999999886666677888999999999999865 4456554 5688888888
Q ss_pred ceEe
Q 000962 694 VFRV 697 (1208)
Q Consensus 694 l~~~ 697 (1208)
+.++
T Consensus 170 L~~N 173 (361)
T 2xot_A 170 LSSN 173 (361)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8764
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=6e-12 Score=156.26 Aligned_cols=113 Identities=21% Similarity=0.299 Sum_probs=90.6
Q ss_pred cccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhc
Q 000962 555 LSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSIC 634 (1208)
Q Consensus 555 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~ 634 (1208)
...+..++.|+.|.+. .+.+..++.. +..+++|++|+|++|.|+.+|..|++|++|++|+|++|.|+.+|..|+
T Consensus 217 ~~~~~~l~~L~~L~Ls-----~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLS-----NLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp -----CCCCCCEEECT-----TSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred hhhhccCCCCcEEECC-----CCCCCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 3446778888998887 3444433333 347899999999999999999889999999999999999999999999
Q ss_pred cCCcccEEecCCCccccccchhcccccccceeeccccccc
Q 000962 635 NLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWF 674 (1208)
Q Consensus 635 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~ 674 (1208)
+|++|++|+|++|. +..+|..|++|++|++|+|++|.+.
T Consensus 291 ~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 291 SCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 99999999999987 5688888999999999999998765
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=5.3e-11 Score=121.79 Aligned_cols=87 Identities=28% Similarity=0.366 Sum_probs=42.2
Q ss_pred hccCCcccEEecCCCCCccc-ccccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccc
Q 000962 587 FHQLKYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLR 664 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 664 (1208)
|..+++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|. .|.++++|++|+|++|.+.+..|..+..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 44455555555555555433 3445555555555555555554433 244455555555555544444444444555555
Q ss_pred eeecccccc
Q 000962 665 NLELEEMFW 673 (1208)
Q Consensus 665 ~L~l~~n~~ 673 (1208)
+|++++|.+
T Consensus 130 ~L~L~~N~l 138 (192)
T 1w8a_A 130 SLNLASNPF 138 (192)
T ss_dssp EEECTTCCB
T ss_pred EEEeCCCCc
Confidence 555555433
No 138
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.10 E-value=1.6e-09 Score=114.40 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=117.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 249 (1208)
..++|++..++++..++.... ...+.|+|.+|+|||++|+.+++... ...+. ..+.+..+.......+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--- 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVR--- 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHH---
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHH---
Confidence 468999999999999997653 33489999999999999999987321 11121 12333333322222221
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHHh------cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhH-Hh-
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEFL------TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV-SQ- 321 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~L------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~- 321 (1208)
..+.... .+++.+||+||++......++.+...+.....+.++|+||+.... ..
T Consensus 87 ------------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 148 (226)
T 2chg_A 87 ------------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (226)
T ss_dssp ------------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred ------------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHH
Confidence 1122211 257899999999765545566677777665667889998886531 11
Q ss_pred hhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHh
Q 000962 322 IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1208)
Q Consensus 322 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 385 (1208)
.......+++.+++.++..+++...+...+.. -..+..+.+++.++|.|..+..+..
T Consensus 149 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-------ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-------BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCceeecCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11222478999999999999999877543221 1135677888999999986555443
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=7.9e-11 Score=120.51 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=95.1
Q ss_pred cccEEecCCCCCcccccc--cccCCcccEEeecCCCcccc-chhhccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 592 YLRLLDLSSSTLTVLPDS--VEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~~--i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
.|++|+|++|.++.+|.. |+.+++|++|+|++|.|+.+ |..|.++++|++|+|++|.+.+..|..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 799999999999988764 89999999999999999977 778999999999999999976666667999999999999
Q ss_pred ccccccccccCCccCCCCCcCcCCCceEecccCC
Q 000962 669 EEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSG 702 (1208)
Q Consensus 669 ~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 702 (1208)
++|.+. +..|..++.+++|++|++.++.....
T Consensus 110 ~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQIS--CVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCC--EECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCC--eeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999876 34578889999999999988654433
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=6.2e-11 Score=115.88 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=105.3
Q ss_pred CCCceeEEEEEcccCC--CCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcc-ccccccc
Q 000962 536 CSPETRHVSLLCKHVE--KPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTV-LPDSVEE 612 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~ 612 (1208)
.++.++++.+..+.+. .++ ..+..+++|+.|.+. .+.+... ..|..+++|++|+|++|.++. +|..++.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~-----~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTI-----NVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECT-----TSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CCccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECc-----CCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 3567889999988887 333 356789999999997 3444444 668899999999999999996 8888888
Q ss_pred CCcccEEeecCCCccccc--hhhccCCcccEEecCCCccccccch----hcccccccceeeccc
Q 000962 613 LKLLRYLDLSRTEIKVLP--NSICNLYNLQTLKLIGCIWIMELPK----DLANLVKLRNLELEE 670 (1208)
Q Consensus 613 l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~ 670 (1208)
+++|++|++++|.++.+| ..++++++|++|++++|.+ ..+|. .+..+++|++|++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCCC
Confidence 999999999999999875 7899999999999999984 44554 688999999999863
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.05 E-value=2.6e-10 Score=116.53 Aligned_cols=105 Identities=27% Similarity=0.298 Sum_probs=67.4
Q ss_pred CcccEEecCCCCCcccccccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccchhcccccccceeecc
Q 000962 591 KYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 669 (1208)
+.|++|+|++|.++.+|..|.++.+|++|+|++|.|+.++. .|.++++|++|+|++|.+....|..+..+++|++|+|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 35667777777777666667777777777777777766643 46677777777777766444444456667777777777
Q ss_pred cccccccccCCc-cCCCCCcCcCCCceEec
Q 000962 670 EMFWFKCSTLPA-GIGKLTNLHNLHVFRVG 698 (1208)
Q Consensus 670 ~n~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 698 (1208)
+|.+. .+|. .+..+++|+.|++.++.
T Consensus 111 ~N~l~---~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDIS---VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCC---BCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCC---eeChhhhhcCccccEEEeCCCC
Confidence 76543 3444 35566666666666543
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=2.2e-10 Score=137.46 Aligned_cols=86 Identities=27% Similarity=0.292 Sum_probs=48.4
Q ss_pred hccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCcccccc-chhcccccccce
Q 000962 587 FHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMEL-PKDLANLVKLRN 665 (1208)
Q Consensus 587 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~ 665 (1208)
|..+++|++|+|++|.++.+|..|+++++|++|+|++|.|+.+| .++++++|++|+|++|.+.+.. |..+..+++|++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 45555555555555555555555555555555555555555555 5555555555555555533332 555555555555
Q ss_pred eecccccc
Q 000962 666 LELEEMFW 673 (1208)
Q Consensus 666 L~l~~n~~ 673 (1208)
|++++|.+
T Consensus 538 L~L~~N~l 545 (567)
T 1dce_A 538 LNLQGNSL 545 (567)
T ss_dssp EECTTSGG
T ss_pred EEecCCcC
Confidence 55555544
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=2.5e-10 Score=115.10 Aligned_cols=128 Identities=13% Similarity=0.161 Sum_probs=107.5
Q ss_pred CCCceeEEEEEcccCCCCccccccCCC-CceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccccccc-ccC
Q 000962 536 CSPETRHVSLLCKHVEKPALSVVENSK-KLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPDSV-EEL 613 (1208)
Q Consensus 536 ~~~~~r~lsl~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~l 613 (1208)
....++++.+..+.+..++. +..+. +|+.|.+. .|.+..+ ..|..+++|++|+|++|.++.+|..+ ..+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls-----~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFS-----DNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECC-----SSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECC-----CCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 35578899999988876632 44444 99999998 4445444 46889999999999999999888665 999
Q ss_pred CcccEEeecCCCccccch--hhccCCcccEEecCCCccccccchh----cccccccceeecccccc
Q 000962 614 KLLRYLDLSRTEIKVLPN--SICNLYNLQTLKLIGCIWIMELPKD----LANLVKLRNLELEEMFW 673 (1208)
Q Consensus 614 ~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~n~~ 673 (1208)
++|++|+|++|.|..+|. .++.+++|++|++++|. +..+|.. +..+++|++|+++.|..
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999999999997 89999999999999998 5577775 89999999999999854
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.98 E-value=1.1e-09 Score=111.72 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=87.1
Q ss_pred cEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccc
Q 000962 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFW 673 (1208)
Q Consensus 594 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~ 673 (1208)
++++++++.++.+|..+. .+|++|+|++|.|+.+|..|.++++|++|++++|.+....|..|..+++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 689999999999998765 689999999999999999999999999999999996655566799999999999999977
Q ss_pred cccccCCccCCCCCcCcCCCceEe
Q 000962 674 FKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 674 ~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
..+ .|..+..+++|+.|++.++
T Consensus 91 ~~i--~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 91 RCI--PPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CBC--CTTTTTTCTTCCEEECCSS
T ss_pred CEe--CHHHhCCCCCCCEEECCCC
Confidence 533 2346889999999998774
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.98 E-value=5.9e-09 Score=116.87 Aligned_cols=268 Identities=16% Similarity=0.130 Sum_probs=150.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|++..++.+..++..... .......+.|+|++|+|||++|+.+++. .... .+++.++......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChH-------
Confidence 4689999999988887753110 0012356889999999999999999873 3222 2344433222211
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC------------------CCcEEEE
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH------------------KGSRVLV 312 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 312 (1208)
++...+...+ .+..+|+|||+..........+...+.... .+.++|.
T Consensus 79 --------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 79 --------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp --------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred --------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1111111111 356799999996654344455555543221 2356666
Q ss_pred ecCChh-HHhhh--CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhhcc
Q 000962 313 TSRTAR-VSQIM--GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFLRK 389 (1208)
Q Consensus 313 TtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l~~ 389 (1208)
||.... +...+ .....+.+.+++.++..+++...+...+.. -..+....+++.++|.|-.+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-------ITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-------CCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 666432 21111 112478999999999999998877543221 12466788999999999887766554421
Q ss_pred C--------CChhHHHHHHhhcccccccCCCCCCCCccchhccccCCChhHHHHHHHhc-cCCCC----------CccCh
Q 000962 390 Y--------DDVNKWRKILSSDIWELEEGSSNGPHILPPLKLSYDHLPPFLKHCFSLCS-IFPKS----------YAFDK 450 (1208)
Q Consensus 390 ~--------~~~~~w~~~l~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~~----------~~i~~ 450 (1208)
. -+.+....++.. +...+..++...+..+..+. .|..+ ..+++
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~------------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~ 278 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAA------------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDP 278 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHH------------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCH
T ss_pred HHHHhcCCCCCHHHHHHHHHH------------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCH
Confidence 1 123333333322 11234456666666655433 23222 12444
Q ss_pred HHHHH----HHHHccccccCCCCCCccHHHHHHHHHH-HHHhccCccc
Q 000962 451 AEMVK----FWMAEALIQSRGGGRQEREEEIGIEYFD-ELLGRSFFQS 493 (1208)
Q Consensus 451 ~~li~----~w~aeg~i~~~~~~~~~~~~~~~~~~~~-~L~~~sll~~ 493 (1208)
..+.+ +-+..|++.....+... .+.|..||. ++++|++||+
T Consensus 279 ~tl~~~l~~~~i~~~li~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 279 GTLEEVHEPYLIRQGLLKRTPRGRVP--TELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHHTHHHHHHTTSEEEETTEEEE--CHHHHHHTTCCCCC------
T ss_pred HHHHHHHhHHHHHhcchhcCCcccee--cHHHHHHHhcCCCCCCCCCC
Confidence 44433 34568898755544444 788999998 9999999985
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=7.9e-10 Score=111.54 Aligned_cols=102 Identities=26% Similarity=0.362 Sum_probs=44.1
Q ss_pred cccEEecCCCCCcccccc-cccCCcccEEeecCCCccccchh-hccCCcccEEecCCCccccccchhcccccccceeecc
Q 000962 592 YLRLLDLSSSTLTVLPDS-VEELKLLRYLDLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELE 669 (1208)
Q Consensus 592 ~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 669 (1208)
.|++|++++|.++.+|.. ++.+++|++|+|++|.++.+|.. ++++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 444444444444443332 34444455555554444444332 3444445555554444222222223444445555554
Q ss_pred cccccccccCCcc-CCCCCcCcCCCceE
Q 000962 670 EMFWFKCSTLPAG-IGKLTNLHNLHVFR 696 (1208)
Q Consensus 670 ~n~~~~~~~lp~~-i~~l~~L~~L~l~~ 696 (1208)
+|.+. .+|.. +..+++|++|++.+
T Consensus 109 ~N~l~---~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 109 TNQLK---SVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp SSCCS---CCCTTTTTTCTTCCEEECCS
T ss_pred CCcce---EeCHHHhcCCcccCEEEecC
Confidence 44332 22332 23444444444443
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=9e-09 Score=115.42 Aligned_cols=186 Identities=14% Similarity=0.176 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 249 (1208)
..++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++... ...+. ..+++..+....... ++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 468999999999999987643 33389999999999999999997321 11111 233443333222211 1222
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh-HHhh-hCCC
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI-MGIR 326 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~ 326 (1208)
++.+.... ..+ .+++.++|+||++......++.+...+.....++++|+||+... +... ....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 21111000 011 35689999999976554556667766665566788888887642 1111 1223
Q ss_pred CcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH-HHHHHHh
Q 000962 327 SPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKAIAG 385 (1208)
Q Consensus 327 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~~~ 385 (1208)
..+++.+++.++..+++...+...+.. -..+.+..|++.++|.|. |+..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK-------YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC-------BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 489999999999999999877432211 113567889999999995 4444443
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=2.1e-11 Score=125.79 Aligned_cols=108 Identities=24% Similarity=0.256 Sum_probs=75.0
Q ss_pred HhccCCcccEEecCCCCCcccccccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccce
Q 000962 586 IFHQLKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRN 665 (1208)
Q Consensus 586 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 665 (1208)
.|..+++|++|+|++|.++.+| .+.++++|++|++++|.+..+|..+..+++|++|++++|. +..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence 5667777777777777777777 6777777777777777777777777777777777777776 34455 5777777777
Q ss_pred eecccccccccccCCccCCCCCcCcCCCceEe
Q 000962 666 LELEEMFWFKCSTLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 666 L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~ 697 (1208)
|++++|.+..+..+ ..+..+++|++|++.++
T Consensus 120 L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 120 LYMSNNKITNWGEI-DKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEESEEECCCHHHH-HHHTTTTTCSEEEECSC
T ss_pred EECCCCcCCchhHH-HHHhcCCCCCEEEecCC
Confidence 77777755432111 24566777777777664
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=2.6e-09 Score=106.53 Aligned_cols=100 Identities=22% Similarity=0.296 Sum_probs=68.2
Q ss_pred ccEEecCCCCCcccccccccCCcccEEeecCCCcccc-chhhccCCcccEEecCCCccccccch-hcccccccceeeccc
Q 000962 593 LRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELEE 670 (1208)
Q Consensus 593 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~ 670 (1208)
.+++++++|.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++|.+. .+|. .+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCC
Confidence 4677777777777776653 6777777777777766 446777777777777777643 4443 356777777777777
Q ss_pred ccccccccCCc-cCCCCCcCcCCCceEec
Q 000962 671 MFWFKCSTLPA-GIGKLTNLHNLHVFRVG 698 (1208)
Q Consensus 671 n~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 698 (1208)
|.+. .+|. .+..+++|+.|++.++.
T Consensus 88 N~l~---~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLK---SIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCC---CCCTTTTTTCTTCCEEECCSSC
T ss_pred CccC---EeCHHHhcCCCCCCEEEeCCCC
Confidence 7553 4444 36677777777776653
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=3.5e-09 Score=105.92 Aligned_cols=97 Identities=23% Similarity=0.397 Sum_probs=43.0
Q ss_pred cEEecCCCCCcccccccccCCcccEEeecCCCcccc-chhhccCCcccEEecCCCccccccchh-cccccccceeecccc
Q 000962 594 RLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVL-PNSICNLYNLQTLKLIGCIWIMELPKD-LANLVKLRNLELEEM 671 (1208)
Q Consensus 594 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n 671 (1208)
+.++++++.+..+|..+. .+|++|+|++|.|+.+ |..|+++++|++|+|++|. +..+|.. +.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 344444444444444432 4444555555544444 2344444555555555444 2223332 344445555555444
Q ss_pred cccccccCCcc-CCCCCcCcCCCceE
Q 000962 672 FWFKCSTLPAG-IGKLTNLHNLHVFR 696 (1208)
Q Consensus 672 ~~~~~~~lp~~-i~~l~~L~~L~l~~ 696 (1208)
.+. .+|.. +..+++|++|++.+
T Consensus 92 ~l~---~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 92 HLK---SIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCC---CCCTTTTTTCTTCSEEECCS
T ss_pred ccc---eeCHHHhccccCCCEEEeCC
Confidence 332 23332 44444444444444
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=7.3e-09 Score=116.24 Aligned_cols=267 Identities=12% Similarity=0.119 Sum_probs=139.9
Q ss_pred CCCceEEecccCCCccchhhhhHHHHhcc-CCcccEEecCCCCCcccccccccCCcccEEeecCCCccccch-hhcc---
Q 000962 561 SKKLRTFLVPSFGEHLKDFGRALDKIFHQ-LKYLRLLDLSSSTLTVLPDSVEELKLLRYLDLSRTEIKVLPN-SICN--- 635 (1208)
Q Consensus 561 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~--- 635 (1208)
..++..|.+. + + +....-..+.. +++|++|||++|.+......-+.++.++++.+..+ .+|. .|.+
T Consensus 24 ~~~l~~L~l~--g---~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLT--G---K-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEE--E---E-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEET
T ss_pred hCceeEEEEe--c---c-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccc
Confidence 4556677665 1 1 11111223344 88999999999998822111222333455555555 3433 4556
Q ss_pred -----CCcccEEecCCCccccccch-hcccccccceeecccccccccccCCccCCCCCcCcCCCceEec---ccCCCChh
Q 000962 636 -----LYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVG---SKSGYRIE 706 (1208)
Q Consensus 636 -----L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~---~~~~~~~~ 706 (1208)
+++|+.|+|.. . +..++. .|..+++|+.|++..|.+..+. +..+..+.++..+...... ........
T Consensus 95 ~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~--~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLL--PEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEEC--TTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred ccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccc--hhhhcCCCceEEecCcchhhhhcccccccc
Confidence 78888888876 4 444443 4677788888888777554332 1334444444444332100 00000111
Q ss_pred hhcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeC
Q 000962 707 ELKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYF 786 (1208)
Q Consensus 707 ~l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 786 (1208)
.+.++..+...+.+.............-....++..+.+...... .....+ ...+++|+.|++.++.
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~l--~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-----------ADFKLI--RDYMPNLVSLDISKTN 237 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-----------HHHHHH--HHHCTTCCEEECTTBC
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-----------HHHHHH--HHhcCCCeEEECCCCC
Confidence 122233333222222222111111111122345555655543110 111111 1125788888888776
Q ss_pred CCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCcc-EEEEeCCCCceecC--CCCCCccccccccCCCCC
Q 000962 787 GNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLR-VLNIKGMLELEKWP--NDEDCRFLGRLKISNCPR 857 (1208)
Q Consensus 787 ~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~-~L~L~~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 857 (1208)
...+|...+ ..+.+|+.|+|.+| +.... .|.++++|+ .+.+.+ .+..++ .+.+|.+|+.++++++..
T Consensus 238 i~~I~~~aF-~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 238 ATTIPDFTF-AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp CCEECTTTT-TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred cceecHhhh-hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCcc
Confidence 777877654 56888888888887 33333 688888888 888877 333333 567788888888766643
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=4.1e-11 Score=123.51 Aligned_cols=101 Identities=27% Similarity=0.230 Sum_probs=49.7
Q ss_pred ccccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcccccccceeecccccccccccCCccCCCCCc
Q 000962 609 SVEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTN 688 (1208)
Q Consensus 609 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~ 688 (1208)
.++.+++|++|+|++|.++.+| .+.++++|++|++++|. +..+|..+..+++|++|++++|.+.. +| .++.+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~---l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIAS---LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCC---HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCc---CC-ccccCCC
Confidence 5555555555555555555555 55555555555555554 33455545555555555555554432 22 3445555
Q ss_pred CcCCCceEecccCCCChhhhcCCCCCC
Q 000962 689 LHNLHVFRVGSKSGYRIEELKELPYLT 715 (1208)
Q Consensus 689 L~~L~l~~~~~~~~~~~~~l~~l~~L~ 715 (1208)
|+.|++.++.......+..+..+++|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 555555554322111223344444444
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=8.7e-09 Score=115.57 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=44.1
Q ss_pred CCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCccccCC--------CCCccEEEEeCCCCceecC--CCCC
Q 000962 774 HPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRILSLGQ--------LSSLRVLNIKGMLELEKWP--NDED 843 (1208)
Q Consensus 774 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~~l~~--------l~~L~~L~L~~~~~~~~~~--~~~~ 843 (1208)
+++|+.|+|+++....+...- +.++.+..+.+..+.+-. -.|.+ +++|+.|.|.+ .+..++ .+.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~~I~~-~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTTEECT-TTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcc--ccccccccccccccccCH-HHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 678888888866554111110 223333444444442111 14555 78888888877 333343 4567
Q ss_pred CccccccccCCCCCC
Q 000962 844 CRFLGRLKISNCPRL 858 (1208)
Q Consensus 844 ~~~L~~L~l~~~~~l 858 (1208)
|.+|+.+++.+|...
T Consensus 123 ~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 123 CDNLKICQIRKKTAP 137 (329)
T ss_dssp CTTCCEEEBCCSSCC
T ss_pred CcccceEEcCCCCcc
Confidence 778888888777544
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.80 E-value=3.7e-08 Score=99.14 Aligned_cols=123 Identities=25% Similarity=0.323 Sum_probs=65.3
Q ss_pred ceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCC-CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecC
Q 000962 973 QLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPR-WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRG 1051 (1208)
Q Consensus 973 ~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~ 1051 (1208)
+.++++++.....+..+. ++|+.|++++|.+....+. +..+++|++|++++|. ++.++. ..+.++++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPD-GVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeCh-hHccCCCccCEEECCC
Confidence 444454444333443332 4666666666654433322 3566666666666665 444443 3456666666666666
Q ss_pred CCCCccCCCCCCc--CCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCC
Q 000962 1052 CPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCP 1102 (1208)
Q Consensus 1052 ~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~ 1102 (1208)
|. ++.++...+. ++|++|++++|. ++.+|. ..+..+++|++|++++|+
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCc-ceEeCH-HHhcCCcccCEEEecCCC
Confidence 63 4444433221 455555555553 444444 134556666666666664
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=6e-09 Score=104.22 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=70.8
Q ss_pred CcccEEecCCCCCccc-ccccccCCcccEEeecCCCccccchh-hccCCcccEEecCCCccccccchh-cccccccceee
Q 000962 591 KYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKD-LANLVKLRNLE 667 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 667 (1208)
+.|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|.. |.++++|++|+|++|.+ ..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEEE
Confidence 6789999999999976 66789999999999999999998875 58999999999999884 456654 88899999999
Q ss_pred ccccccc
Q 000962 668 LEEMFWF 674 (1208)
Q Consensus 668 l~~n~~~ 674 (1208)
+++|.+.
T Consensus 112 L~~N~~~ 118 (174)
T 2r9u_A 112 LYNNPWD 118 (174)
T ss_dssp CCSSCBC
T ss_pred eCCCCcc
Confidence 9998663
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.75 E-value=7.1e-09 Score=103.38 Aligned_cols=84 Identities=26% Similarity=0.293 Sum_probs=68.9
Q ss_pred CcccEEecCCCCCccc-ccccccCCcccEEeecCCCccccchh-hccCCcccEEecCCCccccccchhcccccccceeec
Q 000962 591 KYLRLLDLSSSTLTVL-PDSVEELKLLRYLDLSRTEIKVLPNS-ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLEL 668 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 668 (1208)
+.|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|.. |.++++|++|+|++|.+.+..|..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 6788999999999876 56688999999999999999988775 688999999999998844433345888999999999
Q ss_pred cccccc
Q 000962 669 EEMFWF 674 (1208)
Q Consensus 669 ~~n~~~ 674 (1208)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 998653
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=9.4e-08 Score=107.26 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=116.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc-cc-eeEEEEecCCCChHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH-FE-SRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~ 248 (1208)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+++. .... +. ..+.+..+...... .+++
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIRE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHH
Confidence 358999999999999987653 334899999999999999999973 2111 11 12233322110000 0000
Q ss_pred HHHHcccCCCCCCcHHHHHHHHHHH--h-cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhH-Hhh-h
Q 000962 249 MIEFHSKMEQSTSSISLLETRLLEF--L-TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV-SQI-M 323 (1208)
Q Consensus 249 i~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~-~ 323 (1208)
. ....... + .+++.++|+||++......++.+...+.....+.++|+||....- ... .
T Consensus 96 ~-----------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 K-----------------VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp H-----------------HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred H-----------------HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 0 0111110 1 267889999999776555667777777665667889988876421 111 1
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
.....+++.+++.++..+++...+...+.. -..+..+.|++.++|.|-.+..+...+
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE-------LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE-------ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 112478999999999999998877543321 124567789999999998665544433
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.1e-07 Score=99.58 Aligned_cols=211 Identities=11% Similarity=0.027 Sum_probs=128.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc------ccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE------HFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~~~~~~~~~~ 244 (1208)
..+.||+++++++...|...- .......+.|+|++|+|||++|+.|++...... .| ..+.|.+....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 347899999999987776432 123467889999999999999999998432111 23 246777777778889
Q ss_pred HHHHHHHHcccCCCC-CCcHHHHHHHHHHH--hcCCceEEEEecCCCCCccChHHHHHhhhCC-CCCc--EEEEecCChh
Q 000962 245 ILKGMIEFHSKMEQS-TSSISLLETRLLEF--LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGS--RVLVTSRTAR 318 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~-~~~~~~l~~~l~~~--L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs--~iivTtR~~~ 318 (1208)
++..|++++.+.... ......+...+... -+++++++|||+++.-. .-+.+...+.+. ...+ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 999999998654322 22333343333331 24678999999996543 334455444211 1222 3343443321
Q ss_pred -----H----HhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCC---------C-----------------------ccc
Q 000962 319 -----V----SQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNF---------S-----------------------SRM 357 (1208)
Q Consensus 319 -----v----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~---------~-----------------------~~~ 357 (1208)
+ ...++ ...+.+.+++.+|-.+++..++...... . ...
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI 253 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 1 12221 1468999999999999998877432110 0 001
Q ss_pred cchhhHHHHHHHHHhcCCChHHHHHHHhhh
Q 000962 358 QQQNLEAIGREIVGKCKGLPLAVKAIAGFL 387 (1208)
Q Consensus 358 ~~~~~~~~~~~i~~~c~g~PLai~~~~~~l 387 (1208)
.+..++-+|++++...|-.-.|+.++-.+.
T Consensus 254 ~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 254 NNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp CHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 234455666777777888888888776655
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=5.5e-08 Score=110.11 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=38.3
Q ss_pred ecCCC-CCcccccccccCCcccEEeecC-CCccccc-hhhccCCcccEEecCCCccccccchhcccccccceeecccccc
Q 000962 597 DLSSS-TLTVLPDSVEELKLLRYLDLSR-TEIKVLP-NSICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFW 673 (1208)
Q Consensus 597 ~L~~~-~i~~lp~~i~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~ 673 (1208)
+++++ .++.+|. |..+.+|++|+|++ |.|..+| ..|++|++|++|+|++|.+.+..|..|.+|++|++|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4555555 55555555555553 5555444 2455555555555555553333344445555555555555533
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.56 E-value=6.9e-07 Score=102.20 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=115.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|++..++.+..++.... ....+.|+|+.|+||||+|+.+++.......+.. ..+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHh
Confidence 358999999999999987543 2347889999999999999999874221111100 000000 0011111
Q ss_pred HH-------cccCC-CCCCcHHHHHHHHHHH-hcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh-HH
Q 000962 251 EF-------HSKME-QSTSSISLLETRLLEF-LTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VS 320 (1208)
Q Consensus 251 ~~-------~~~~~-~~~~~~~~l~~~l~~~-L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~ 320 (1208)
.. +.... ........+.+.+... ..+++.++|+||+...+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 00000 0112222222222111 135678999999976555556777777766556677777776432 21
Q ss_pred h-hhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 321 Q-IMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 321 ~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
. .......+++.+++.++..+++...+...+.. -..+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-------~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-------HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-------BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 12223578999999999999998776432211 113567789999999998776654
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.56 E-value=1.2e-06 Score=100.28 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=69.6
Q ss_pred CCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCccccc-ccccCCcccEEeecCCCccccch-hhccCC
Q 000962 560 NSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLPD-SVEELKLLRYLDLSRTEIKVLPN-SICNLY 637 (1208)
Q Consensus 560 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~ 637 (1208)
.+..+..+.+. +.+..+...+|.++ +|+.++|..+ ++.++. .|.++ +|+.+.+.. .++.++. .|.+|.
T Consensus 111 ~~~~l~~i~ip------~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 111 ILKGYNEIILP------NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY 180 (401)
T ss_dssp ECSSCSEEECC------TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT
T ss_pred ecCCccEEEEC------CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc
Confidence 34556666554 22333444556664 5777777654 555543 35553 577777765 4666653 577777
Q ss_pred cccEEecCCCccccccchhcccccccceeecccccccccccCC-ccCCCCCcCcCCCc
Q 000962 638 NLQTLKLIGCIWIMELPKDLANLVKLRNLELEEMFWFKCSTLP-AGIGKLTNLHNLHV 694 (1208)
Q Consensus 638 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~~~lp-~~i~~l~~L~~L~l 694 (1208)
+|+.+++..|. +..+|.......+|+.+.+..+ + ..++ ..+..+++|+.+.+
T Consensus 181 ~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l---~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 181 NLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-L---KEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-C---CEECTTTTTTCTTCCCEEC
T ss_pred cCCeeecCCCc-ceEechhhEeecccCEEEeCCc-h---heehhhHhhCCCCCCEEec
Confidence 77777777665 5555555444567777777643 2 2222 33455666666654
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.50 E-value=8.4e-07 Score=101.44 Aligned_cols=230 Identities=18% Similarity=0.160 Sum_probs=142.2
Q ss_pred CCCCccccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccc-cccccCCcccEEeecCCCccc
Q 000962 550 VEKPALSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKV 628 (1208)
Q Consensus 550 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~ 628 (1208)
+..+....|.++ +|+.+.+. +.+..+...+|.++ .|+.+.|.. .++.++ ..|.+|.+|+.++|++|.++.
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~------~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~ 194 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLN------EGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK 194 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECC------TTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE
T ss_pred cCEehHhhcccC-CccEEEeC------CCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE
Confidence 444455556665 68888876 22444555677775 699999986 666665 568999999999999999999
Q ss_pred cchhhccCCcccEEecCCCccccccc-hhcccccccceeecccccccccccCCccCCCCCcCcCCCceEecccCCCChhh
Q 000962 629 LPNSICNLYNLQTLKLIGCIWIMELP-KDLANLVKLRNLELEEMFWFKCSTLPAGIGKLTNLHNLHVFRVGSKSGYRIEE 707 (1208)
Q Consensus 629 lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 707 (1208)
+|...-.+.+|+.+.+..+ +..++ ..|.++++|+.+++..+ + ..++...-.-.+|+.+.+.. .
T Consensus 195 I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l---~~I~~~aF~~~~L~~i~lp~--~-------- 258 (401)
T 4fdw_A 195 LPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-V---STIGQEAFRESGITTVKLPN--G-------- 258 (401)
T ss_dssp ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-C---CEECTTTTTTCCCSEEEEET--T--------
T ss_pred echhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-c---cCccccccccCCccEEEeCC--C--------
Confidence 9886555789999999854 44454 46788999999999864 2 33333321225565555421 1
Q ss_pred hcCCCCCCCceeeCCccccccccccccCcccCcceEEeeecCCCCCCCCCCCCccchHHHhhccCCCCCCcEEEEeeeCC
Q 000962 708 LKELPYLTGKLHISKLENAVNGGEAKLSEKESLHKLVFEWSNNRDSSPQSQDVSGDEERLLEDLQPHPNLEELQIFNYFG 787 (1208)
Q Consensus 708 l~~l~~L~~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 787 (1208)
+.......+..+.+|+.+.+..+....... ..--...+..+++|+.+.+.+. .
T Consensus 259 ------------------i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~--------~~I~~~aF~~c~~L~~l~l~~~-i 311 (401)
T 4fdw_A 259 ------------------VTNIASRAFYYCPELAEVTTYGSTFNDDPE--------AMIHPYCLEGCPKLARFEIPES-I 311 (401)
T ss_dssp ------------------CCEECTTTTTTCTTCCEEEEESSCCCCCTT--------CEECTTTTTTCTTCCEECCCTT-C
T ss_pred ------------------ccEEChhHhhCCCCCCEEEeCCccccCCcc--------cEECHHHhhCCccCCeEEeCCc-e
Confidence 111122345566677777776553320000 0000134666777887777643 3
Q ss_pred CCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCC
Q 000962 788 NSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLE 834 (1208)
Q Consensus 788 ~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~ 834 (1208)
..++...+ ..+.+|+.+.|..+ ..... .|..+ +|+.+.+.+|..
T Consensus 312 ~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 312 RILGQGLL-GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CEECTTTT-TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred EEEhhhhh-cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 44444333 45778888888654 22222 67777 888888877743
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.46 E-value=8.3e-07 Score=99.08 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 249 (1208)
..++|++..++.+..++.... ...+.|+|++|+|||++|+.+++... ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 358999999999988886543 33389999999999999999987311 11111 1223333321111
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHH--h-cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh-HHhh-hC
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEF--L-TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI-MG 324 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~ 324 (1208)
.........+... + .+++.++|+||+........+.+...+.....+.++|+||.... +... ..
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 1111111111111 1 25688999999966544445556666655556778888876543 2111 12
Q ss_pred CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHh
Q 000962 325 IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1208)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 385 (1208)
....+++.+++.++..+++...+...+.. -..+....+++.++|.+-.+.....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-------i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK-------ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC-------BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23478999999999999998877543321 1245677888999999976554433
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.43 E-value=3.9e-07 Score=97.09 Aligned_cols=175 Identities=16% Similarity=0.142 Sum_probs=102.9
Q ss_pred Cccccc---hhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000962 171 ANVFGR---DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 171 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
..|+|. +..++.+..+.... ..+.+.|+|++|+||||+|+.+++. .......+.|+.++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 346653 35556666665542 2467889999999999999999983 3333334567765432110
Q ss_pred HHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccC--hHHHHHhhhCC-CCC-cEEEEecCCh------
Q 000962 248 GMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK--WEPLQQLLKQG-HKG-SRVLVTSRTA------ 317 (1208)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~iivTtR~~------ 317 (1208)
+. . .+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+..
T Consensus 95 -----~~----------~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----ST----------A---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----CG----------G---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----HH----------H---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00 011 346799999996543222 33344443211 122 2577777632
Q ss_pred ---hHHhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHh
Q 000962 318 ---RVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAG 385 (1208)
Q Consensus 318 ---~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~ 385 (1208)
.+...+.....+++.+++.++..+++...+...+.. -..++...+++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ-------LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC-------CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 222222223678999999999999998877533221 1246677889999998876655443
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=2.1e-07 Score=105.26 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=74.5
Q ss_pred hhhhhHHHHhccCCcccEEecCC-CCCcccc-cccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccccccc
Q 000962 578 DFGRALDKIFHQLKYLRLLDLSS-STLTVLP-DSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWIMELP 654 (1208)
Q Consensus 578 ~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp 654 (1208)
.+..++. +..+++|++|+|++ |.++.+| ..|++|.+|++|+|++|.|+.+|. .|.+|++|++|+|++|. +..+|
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLS 96 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCC
T ss_pred CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeC
Confidence 3444433 78888999999996 9999777 569999999999999999997765 68999999999999988 45666
Q ss_pred hhcccccccceeeccccccc
Q 000962 655 KDLANLVKLRNLELEEMFWF 674 (1208)
Q Consensus 655 ~~i~~L~~L~~L~l~~n~~~ 674 (1208)
..+.....|++|+|.+|.+.
T Consensus 97 ~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp STTTCSCCCCEEECCSSCCC
T ss_pred HHHcccCCceEEEeeCCCcc
Confidence 65544334999999998664
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.37 E-value=8.8e-07 Score=90.52 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=82.0
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccc---cc--ccceeEEEEecCCCChHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERV---RE--HFESRMWVCVTVDYDLPRI 245 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~--~F~~~~wv~~~~~~~~~~~ 245 (1208)
..++||+++++++.+++.... ...+.|+|.+|+|||++|+.+++...- .. .....+++.+.. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 458999999999999987643 456789999999999999999873211 00 112234443321 1
Q ss_pred HHHHHHHcccCCCCCCcHHHHHHHHHHHh--cCCceEEEEecCCCCC--------ccChHHHHHhhhCCCCCcEEEEecC
Q 000962 246 LKGMIEFHSKMEQSTSSISLLETRLLEFL--TGQRFLLVLDDVWNED--------YRKWEPLQQLLKQGHKGSRVLVTSR 315 (1208)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTtR 315 (1208)
. ... ............+.+.+ .+++.+|||||+.... ......+...+.. .+..+|+||.
T Consensus 90 ~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp H-------TTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred h-------ccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 0 000 00001111111111111 3567899999996532 1223344444432 2345777766
Q ss_pred ChhHHhh-------hCCCCcEeCCCCChhHHHHH
Q 000962 316 TARVSQI-------MGIRSPYLLEYLPEDQCWSI 342 (1208)
Q Consensus 316 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~l 342 (1208)
....... ......+.+.+++.++..++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 5442211 11122578888888776654
No 167
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.33 E-value=7.2e-06 Score=94.81 Aligned_cols=181 Identities=18% Similarity=0.102 Sum_probs=107.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccc--eeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFE--SRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
...+.|+|.+|+||||||+.+++ .....+. .++++++. .+..++...+... .. ..+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 56789999999999999999998 3433332 23455433 2334444333321 11 12333334
Q ss_pred CCceEEEEecCCCCCc--cChHHHHHhhhC-CCCCcEEEEecCC---------hhHHhhhCCCCcEeCCCCChhHHHHHH
Q 000962 276 GQRFLLVLDDVWNEDY--RKWEPLQQLLKQ-GHKGSRVLVTSRT---------ARVSQIMGIRSPYLLEYLPEDQCWSIF 343 (1208)
Q Consensus 276 ~kr~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf 343 (1208)
.+.-+||+||++.... ...+.+...+.. ...|..||+||.. +.+...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3678999999965332 122344444422 2356788888875 233444544567899999999999999
Q ss_pred HHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHHhhh------ccC-CChhHHHHHHhh
Q 000962 344 KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIAGFL------RKY-DDVNKWRKILSS 402 (1208)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~~~l------~~~-~~~~~w~~~l~~ 402 (1208)
...+...+.. . ..++...|++.++|.+-.+.-+...+ ..+ -+.+.++.++..
T Consensus 273 ~~~~~~~~~~----i---~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHGE----L---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTCC----C---CTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCCC----C---CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8887532211 1 12456788899999885443332211 121 355677777664
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.29 E-value=2e-05 Score=90.60 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=47.7
Q ss_pred cccccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCcccc-cccccCCcccEEeecCCCccccc-hh
Q 000962 555 LSVVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLTVLP-DSVEELKLLRYLDLSRTEIKVLP-NS 632 (1208)
Q Consensus 555 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~ 632 (1208)
..+|.++.+|+++.+. +.+..+...+|.++.+|+.++|..+ ++.++ ..|.++..|+.+.+..+ +..++ ..
T Consensus 64 ~~AF~~c~~L~~i~lp------~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIP------STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp TTTTTTCTTEEEEECC------TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred HHHhhCCCCceEEEeC------CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 3445556666666554 1122333445566666666666533 44333 23555555555554433 33332 23
Q ss_pred hccCCcccEEecCCCccccccchhcccccccceeeccc
Q 000962 633 ICNLYNLQTLKLIGCIWIMELPKDLANLVKLRNLELEE 670 (1208)
Q Consensus 633 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 670 (1208)
|.++..++.........++ ...+.++++|+.+.+..
T Consensus 136 F~~~~~~~~~~~~~~~~i~--~~aF~~c~~L~~i~l~~ 171 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIG--DEAFATCESLEYVSLPD 171 (394)
T ss_dssp TTTCCCSEEECCTTCCEEC--TTTTTTCTTCCEEECCT
T ss_pred eecccccccccCccccccc--hhhhcccCCCcEEecCC
Confidence 4444333333322221111 12345555666665543
No 169
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.29 E-value=3.6e-05 Score=86.28 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|++..++++..++..... .......|.|+|++|+|||++|+.+++ +....| +.+.+.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccc---------
Confidence 4689999999999888864310 012344689999999999999999987 333332 2233322111
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC------------------CCcEEEE
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH------------------KGSRVLV 312 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 312 (1208)
...+...+.. ..+..+|+||++..........+...+.... ++.++|.
T Consensus 94 ------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 94 ------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1112122211 2456899999997654444555655554322 1245666
Q ss_pred ecCChh-HHhh-h-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 313 TSRTAR-VSQI-M-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 313 TtR~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
||.... +... . .....+.+.+++.++..+++...+...+. .-..+....|++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-------~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-------TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-------EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 665432 1111 1 22357899999999999999887754321 1124567788889999995544433
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=6.9e-06 Score=92.98 Aligned_cols=193 Identities=12% Similarity=0.089 Sum_probs=113.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 249 (1208)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+++.......+. ..+.+..+....... +++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 468999999999999987653 22388999999999999999997421111111 122333333222222 2222
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh-----HHhhhC
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-----VSQIMG 324 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-----v~~~~~ 324 (1208)
+.............. .....-.+++-+|++|++..........+...+.......++|++|.... +...
T Consensus 110 ~~~~~~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR-- 183 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ-- 183 (353)
T ss_dssp HHHHHHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH--
T ss_pred HHHHhhhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc--
Confidence 211111100000000 00011123556999999966554455667766665555677777775432 2222
Q ss_pred CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 325 IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
...+++.+++.++..+.+...+...+.. -..+..+.|++.++|.|-.+..+.
T Consensus 184 -~~~i~~~~~~~~~~~~~l~~~~~~~~~~-------i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 -CSKFRFKALDASNAIDRLRFISEQENVK-------CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHHHTTTCC-------CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred -CceEEeCCCCHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2478899999999999998876543221 114667889999999997654443
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.23 E-value=2e-05 Score=90.75 Aligned_cols=183 Identities=15% Similarity=0.172 Sum_probs=104.8
Q ss_pred CccccchhhH---HHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000962 171 ANVFGRDDDK---ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 171 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
..+||.+..+ ..+...+.... ...+.|+|.+|+||||+|+.+++. ....| +.++.......-++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHHHH
Confidence 4588888877 66777776554 467899999999999999999983 33322 33332211111112
Q ss_pred HHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEE-EecCChh--HH-hhh
Q 000962 248 GMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL-VTSRTAR--VS-QIM 323 (1208)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtR~~~--v~-~~~ 323 (1208)
+++... ......+++.+|++|++........+.+...+..+ . ..+| .||.+.. +. ...
T Consensus 93 ~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~-v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 93 EAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-T-ITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT-S-CEEEEEESSCGGGSSCHHHH
T ss_pred HHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-c-eEEEecCCCCcccccCHHHh
Confidence 221110 01111467899999999776555666677777642 2 3333 3555542 11 112
Q ss_pred CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 324 GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 324 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
.....+.+.+++.++...++...+.............-..+....|++.++|.+-.+..+.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2234788999999999999988775421110000112234567788888998886554433
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.22 E-value=1.3e-07 Score=107.14 Aligned_cols=106 Identities=20% Similarity=0.144 Sum_probs=53.8
Q ss_pred CcccEEecCCCCCcc--cccccccCCcccEEeecCCCccccc-----hhh-ccCCcccEEecCCCcccc----ccchhcc
Q 000962 591 KYLRLLDLSSSTLTV--LPDSVEELKLLRYLDLSRTEIKVLP-----NSI-CNLYNLQTLKLIGCIWIM----ELPKDLA 658 (1208)
Q Consensus 591 ~~Lr~L~L~~~~i~~--lp~~i~~l~~Lr~L~L~~~~i~~lp-----~~i-~~L~~L~~L~L~~~~~~~----~lp~~i~ 658 (1208)
+.|++|+|++|.++. +..-...+.+|++|+|++|.+.... ..+ ...++|++|+|++|.+.. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 566666666666641 2222233456666666666665221 112 234566666666665321 2333445
Q ss_pred cccccceeecccccccccc--cCCccCCCCCcCcCCCceE
Q 000962 659 NLVKLRNLELEEMFWFKCS--TLPAGIGKLTNLHNLHVFR 696 (1208)
Q Consensus 659 ~L~~L~~L~l~~n~~~~~~--~lp~~i~~l~~L~~L~l~~ 696 (1208)
.+++|++|+|++|.+...+ .++..+...++|++|++.+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 5666666666666543211 2233344455566665554
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=1e-05 Score=88.25 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=100.2
Q ss_pred CccccchhhHHHHHHHHcCCCCC-------CCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFD-------EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..++|.+..++++...+...... +......+.|+|++|+|||+||+.+++. ....| +.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHH--
Confidence 56899999999998877432000 0122456899999999999999999973 33222 2232221111
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC-----------CccChHHHHHhh---h--CCCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-----------DYRKWEPLQQLL---K--QGHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l---~--~~~~g 307 (1208)
. ........+...+......++.+|+|||+... +......+...+ . ....+
T Consensus 90 ------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 ------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp ------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred ------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 0 00111122222233333456789999999431 111112233322 2 22345
Q ss_pred cEEEEecCChhHHh-h-h---CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCC-ChHHHH
Q 000962 308 SRVLVTSRTARVSQ-I-M---GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG-LPLAVK 381 (1208)
Q Consensus 308 s~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~ 381 (1208)
..||.||....... . . .....+.+...+.++..++|...+...... .... ...+++.+.| .|-.|.
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~----~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA----EDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC----TTCC----HHHHHHHCTTCCHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC----CcCC----HHHHHHHcCCCCHHHHH
Confidence 67888887543211 1 1 122468899999999999998887543221 1111 3566677766 443443
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.19 E-value=3.6e-05 Score=88.36 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=77.9
Q ss_pred cccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCCCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEee
Q 000962 970 QRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPRWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSI 1049 (1208)
Q Consensus 970 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l 1049 (1208)
..|+.+.+...........+.+|.+|+.+.+..+...-....+..+..|+.+...... ++. ..+.++.+|+.+.+
T Consensus 230 ~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~-~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPE-KTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECT-TTTTTCTTCCEEEE
T ss_pred CCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee----ecc-cccccccccccccc
Confidence 4555565554432222344566677777777655321111224556666666665432 322 45666777777777
Q ss_pred cCCCCCccCCCCCCc--CCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCCCCCCCCCCCCC--CCccceEecc
Q 000962 1050 RGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDCPLLQSFPEDGL--PENLQHLVIQ 1122 (1208)
Q Consensus 1050 ~~~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~--~~sL~~L~l~ 1122 (1208)
..+ ++.++...+. ++|+.++|.+ .++.++. ..|.+|++|+.+.+..+ ++.++...+ .++|+.+++.
T Consensus 305 ~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 305 LDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK-RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT-TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred ccc--cceechhhhcCCCCCCEEEeCC--cccEEhH-HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 553 5566555554 5677777653 2556654 35677777777777543 566655422 2456666554
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.18 E-value=1.4e-07 Score=106.94 Aligned_cols=154 Identities=17% Similarity=0.125 Sum_probs=91.1
Q ss_pred ceeEEEEEcccCCCCcccccc-----CCCCceEEecccCCCccchhhhh-HHHHhccCCcccEEecCCCCCccc-----c
Q 000962 539 ETRHVSLLCKHVEKPALSVVE-----NSKKLRTFLVPSFGEHLKDFGRA-LDKIFHQLKYLRLLDLSSSTLTVL-----P 607 (1208)
Q Consensus 539 ~~r~lsl~~~~~~~~~~~~~~-----~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~~l-----p 607 (1208)
.++.+.+..+.+.......+. ..+.|+.|.+. .+.+... ....+..+++|+.|+|++|.++.. .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls-----~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA-----SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT-----TCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec-----CCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 345666666555432221111 23678888776 2333222 223334456788888888877622 1
Q ss_pred ccc-ccCCcccEEeecCCCccc-----cchhhccCCcccEEecCCCcccc----ccchhcccccccceeecccccccccc
Q 000962 608 DSV-EELKLLRYLDLSRTEIKV-----LPNSICNLYNLQTLKLIGCIWIM----ELPKDLANLVKLRNLELEEMFWFKCS 677 (1208)
Q Consensus 608 ~~i-~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~n~~~~~~ 677 (1208)
..+ ....+|++|+|++|.|+. ++..+..+++|++|+|++|.+.. .++..+...++|++|+|++|.+...+
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 222 245678888888887763 45566777888888888877432 23455667778888888888664321
Q ss_pred --cCCccCCCCCcCcCCCceEe
Q 000962 678 --TLPAGIGKLTNLHNLHVFRV 697 (1208)
Q Consensus 678 --~lp~~i~~l~~L~~L~l~~~ 697 (1208)
.++..+...++|++|++.+|
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHhCCCCCEEeccCC
Confidence 23334445677777777664
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.17 E-value=2.8e-05 Score=83.63 Aligned_cols=187 Identities=14% Similarity=0.117 Sum_probs=99.6
Q ss_pred CccccchhhHHHHHHHH---cCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHML---LSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.+..++.+.+++ ..... .+....+.+.|+|++|+|||++|+.+++. ....| +.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVPF---LAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCCE---EEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEechHHHHhh--
Confidence 45889988877776554 22210 00123456789999999999999999983 33222 33443321110
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC------------CccCh---HHHHHhhhC--CCCC
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE------------DYRKW---EPLQQLLKQ--GHKG 307 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~------------~~~~~---~~l~~~l~~--~~~g 307 (1208)
........+...+.........+|++||+... ..... ..+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00111122223333333456789999999542 11111 223333332 2235
Q ss_pred cEEEEecCChhHH-hhh----CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH-HHH
Q 000962 308 SRVLVTSRTARVS-QIM----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVK 381 (1208)
Q Consensus 308 s~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~ 381 (1208)
..||.||...... ... .....+.+...+.++..+++...+...... .........+++.+.|.+- .|.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~------~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT------QSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC------BTHHHHHHHHHHTCTTCCHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC------cchhhHHHHHHHHCCCCCHHHHH
Confidence 5677777654321 111 123567899999999999998877543321 1112234678888888754 443
Q ss_pred HH
Q 000962 382 AI 383 (1208)
Q Consensus 382 ~~ 383 (1208)
.+
T Consensus 220 ~l 221 (262)
T 2qz4_A 220 NI 221 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=8e-06 Score=92.45 Aligned_cols=196 Identities=9% Similarity=0.042 Sum_probs=106.9
Q ss_pred CccccchhhHHHHHHHH-cCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc-cc-c--ccce---------------
Q 000962 171 ANVFGRDDDKERILHML-LSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VR-E--HFES--------------- 230 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~--~F~~--------------- 230 (1208)
..++|.+..++.+..++ .... ... +.|+|+.|+||||+|+.++.... .. + .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45889999998888887 4332 223 89999999999999998876210 00 0 0110
Q ss_pred -----eEEEEecCCC-ChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCC
Q 000962 231 -----RMWVCVTVDY-DLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG 304 (1208)
Q Consensus 231 -----~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~ 304 (1208)
.+.+..+... ......+++++.+....... ... .+ ..+.+++-++|+|++..-+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0111111000 00001122222211100000 000 00 001336679999999765555556677666554
Q ss_pred CCCcEEEEecCCh-hHHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhh-HHHHHHHHHhcCCChHHHH
Q 000962 305 HKGSRVLVTSRTA-RVSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNL-EAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 305 ~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~-~~~~~~i~~~c~g~PLai~ 381 (1208)
..+.++|++|... .+... ......+++.+++.++..+.+...+...+.. -. .+....|++.++|.+-.+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-------LETKDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-------ECCSHHHHHHHHHHTTCHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-------CCcHHHHHHHHHHcCCCHHHHH
Confidence 5567788877653 22211 1223678999999999999998877432210 11 2566788899999886555
Q ss_pred HHHh
Q 000962 382 AIAG 385 (1208)
Q Consensus 382 ~~~~ 385 (1208)
.+..
T Consensus 235 ~~l~ 238 (354)
T 1sxj_E 235 LMLE 238 (354)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=1.1e-05 Score=95.51 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHcCCC------C-----CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC
Q 000962 171 ANVFGRDDDKERILHMLLSDE------F-----DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD 239 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~------~-----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 239 (1208)
..++|++..++++..++.... . .+....+.+.|+|++|+||||+|+.+++. . .+. ++.+.++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~~-~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GYD-ILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TCE-EEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CCC-EEEEeCCCc
Confidence 468999999999999987511 0 00123468999999999999999999983 2 122 334444444
Q ss_pred CChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccC---hHHHHHhhhCCCCCcEEEEecCC
Q 000962 240 YDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK---WEPLQQLLKQGHKGSRVLVTSRT 316 (1208)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~---~~~l~~~l~~~~~gs~iivTtR~ 316 (1208)
... .++...+...........-...... .....+++.+||+|++......+ +..+...+... +..||+++..
T Consensus 114 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNE 188 (516)
T ss_dssp CCH-HHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESC
T ss_pred chH-HHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 333 2333322222111100000000000 00113678899999996533222 35555555432 2335555443
Q ss_pred hh---HHhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCC-ChHHHHHHHh
Q 000962 317 AR---VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG-LPLAVKAIAG 385 (1208)
Q Consensus 317 ~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~~~~ 385 (1208)
.. +.........+++.+++.++..+.+...+...+..- ..++...|++.++| ++-|+..+..
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i-------~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL-------DPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC-------CTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 222222335789999999999999988775433211 12456788899998 5555655543
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.08 E-value=6.1e-05 Score=85.64 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=105.6
Q ss_pred CccccchhhHHH---HHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEec----CCCChH
Q 000962 171 ANVFGRDDDKER---ILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVT----VDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~~~~ 243 (1208)
..+||++..++. +...+.... ...+.+.|+|++|+|||++|+.+++. ...... .+.+... ......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchh
Confidence 469999988766 455555433 22368899999999999999999983 322111 1222221 122333
Q ss_pred HHHHHHHHHcccC---------------------C--------C-CCCcHHHHHHHHHHHh-----cCC----ceEEEEe
Q 000962 244 RILKGMIEFHSKM---------------------E--------Q-STSSISLLETRLLEFL-----TGQ----RFLLVLD 284 (1208)
Q Consensus 244 ~~~~~i~~~~~~~---------------------~--------~-~~~~~~~l~~~l~~~L-----~~k----r~LlVlD 284 (1208)
+.+.+........ . . .......+...+.+.. .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 3333333321100 0 0 0001122222222211 233 3599999
Q ss_pred cCCCCCccChHHHHHhhhCCCCCcEEEEecCC-----------------hhHHhhhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 285 DVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT-----------------ARVSQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 285 dvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
++..........+...+...... .++++|.. +.+...+ ..+.+.+++.++..+++...+
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHH
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHH
Confidence 99765555556666666543333 34444431 2233322 357999999999999999877
Q ss_pred ccCCCCCccccchhhHHHHHHHHHhcC-CChHHHH
Q 000962 348 FNQGNFSSRMQQQNLEAIGREIVGKCK-GLPLAVK 381 (1208)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~~~c~-g~PLai~ 381 (1208)
...+.. --.++...|++.+. |.|-.+.
T Consensus 273 ~~~~~~-------~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 273 EEEDVE-------MSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHTTCC-------BCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHcCCC-------CCHHHHHHHHHHhcCCCHHHHH
Confidence 543221 12456678888886 6665443
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.07 E-value=3.8e-05 Score=84.89 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=92.1
Q ss_pred ccccchhhHHHHHHHHcCCC---------CCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000962 172 NVFGRDDDKERILHMLLSDE---------FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1208)
.++|.+..++.+.+++.... .........+.|+|.+|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47899888888876653210 001123557899999999999999988873221111111123333211
Q ss_pred HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC---------CccChHHHHHhhhCCCCCcEEEEe
Q 000962 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE---------DYRKWEPLQQLLKQGHKGSRVLVT 313 (1208)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 313 (1208)
.+... ........+...+... +.-+|++|++... .......+...+.....+..||+|
T Consensus 109 ---------~l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 01000 0111122222333222 3469999999632 223345666666655666788888
Q ss_pred cCChh----------HHhhhCCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 314 SRTAR----------VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 314 tR~~~----------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
|.... +...+ ...+.+++++.++..+++...+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 86432 22222 257889999999999999887754
No 181
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=7.8e-07 Score=86.74 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=52.8
Q ss_pred CCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCC------cCCCCEEEEecCCCCcccCCcCCCCC
Q 000962 1016 PGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGL------PTSLKCLIIASCSGLKSLGPRGTLKS 1089 (1208)
Q Consensus 1016 ~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~------~~~L~~L~l~~c~~l~~lp~~~~l~~ 1089 (1208)
..|+.|++++|. ++.... ..+.++++|++|+|++|..++.-....+ .++|++|+|++|+.+++-.. ..+.+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHH 137 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGG
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhc
Confidence 356777777766 443332 3456677777777777765543211111 13578888888877766322 13556
Q ss_pred CCCCCceeecCCCCCCC
Q 000962 1090 LNSLKDFYIEDCPLLQS 1106 (1208)
Q Consensus 1090 l~~L~~L~l~~c~~l~~ 1106 (1208)
+++|++|++++|+.++.
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 77777777777776664
No 182
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.02 E-value=0.0001 Score=82.05 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc--------------------ccceeEEEEe
Q 000962 177 DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE--------------------HFESRMWVCV 236 (1208)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~~ 236 (1208)
++..+.+...+..+. -.+.+.++|+.|+||||+|+.+++...-.. ++| ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 455667777776543 345789999999999999999987321111 112 122221
Q ss_pred cCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh-----cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEE
Q 000962 237 TVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFL-----TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL 311 (1208)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 311 (1208)
.. .......+++.+ +.+.+ .+++-++|+|+++..+....+.+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001122222222 22222 2567899999997665555667777776655667777
Q ss_pred EecCChh-HHhh-hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHHH
Q 000962 312 VTSRTAR-VSQI-MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAIA 384 (1208)
Q Consensus 312 vTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~~ 384 (1208)
++|...+ +... ......+++.++++++..+.+.... ... .+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~--------~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TMS--------QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CCC--------HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CCC--------HHHHHHHHHHcCCCHHHHHHHh
Confidence 7776542 2221 2233578999999999999888765 111 3456788999999997665443
No 183
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=3.4e-06 Score=89.15 Aligned_cols=90 Identities=24% Similarity=0.201 Sum_probs=66.5
Q ss_pred hhhhhHHHHhccCCcccEEecCCCCCccc---ccccccCCcccEEeecCCCccccchhhccCC--cccEEecCCCccccc
Q 000962 578 DFGRALDKIFHQLKYLRLLDLSSSTLTVL---PDSVEELKLLRYLDLSRTEIKVLPNSICNLY--NLQTLKLIGCIWIME 652 (1208)
Q Consensus 578 ~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~~~~ 652 (1208)
.+...+.-...+++.|+.|+|++|.++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+.+.
T Consensus 157 ~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 157 CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccc
Confidence 34444444556788999999999998854 46677899999999999999877 3355555 899999999886665
Q ss_pred cch-------hcccccccceeec
Q 000962 653 LPK-------DLANLVKLRNLEL 668 (1208)
Q Consensus 653 lp~-------~i~~L~~L~~L~l 668 (1208)
+|. .+..+++|+.||-
T Consensus 236 ~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 236 FRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CSSHHHHHHHHHHHCTTCCEESS
T ss_pred cCcchhHHHHHHHHCcccCeECC
Confidence 652 3567777877753
No 184
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.01 E-value=9e-06 Score=82.30 Aligned_cols=45 Identities=29% Similarity=0.441 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..++||+.+++.+.+.+.... ...+.|+|.+|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997643 446689999999999999999873
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.00 E-value=9.5e-05 Score=79.82 Aligned_cols=195 Identities=19% Similarity=0.224 Sum_probs=100.5
Q ss_pred ccccchhhHHHHHH-------HHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 172 NVFGRDDDKERILH-------MLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
.++|....++++.. .+.... ......+.|+|++|+|||++|+.+++. ....| +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~~---- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDKM---- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGGC----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHHh----
Confidence 46777766665555 333211 234678899999999999999999983 22222 222222210
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC------Cc---cC-hHHHHHhhhC---CCCCcEEE
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE------DY---RK-WEPLQQLLKQ---GHKGSRVL 311 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~------~~---~~-~~~l~~~l~~---~~~gs~ii 311 (1208)
... ........+...+......+..+|+|||+... .. .. ...+...+.. ......||
T Consensus 102 ---------~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 102 ---------IGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp ---------TTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred ---------cCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 000 00001122233333334467899999998431 11 11 1223333322 22234567
Q ss_pred EecCChhHHhhh---C-CCCcEeCCCCCh-hHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCC------ChHHH
Q 000962 312 VTSRTARVSQIM---G-IRSPYLLEYLPE-DQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG------LPLAV 380 (1208)
Q Consensus 312 vTtR~~~v~~~~---~-~~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g------~PLai 380 (1208)
.||...+..... + ....+++.++++ ++..+++.... .. ..+....|++.+.| .+-++
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~--------~~~~~~~l~~~~~g~~~~g~ir~l~ 239 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF--------KDKERTTIAQQVKGKKVWIGIKKLL 239 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS--------CHHHHHHHHHHHTTSEEEECHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC--------CHHHHHHHHHHhcCCCccccHHHHH
Confidence 778776543321 1 134678888888 66666655421 11 13456778888877 44444
Q ss_pred HHHHhhhccCCChhHHHHHHh
Q 000962 381 KAIAGFLRKYDDVNKWRKILS 401 (1208)
Q Consensus 381 ~~~~~~l~~~~~~~~w~~~l~ 401 (1208)
.++-.... ......+..++.
T Consensus 240 ~~l~~a~~-~~~~~~~~~~~~ 259 (272)
T 1d2n_A 240 MLIEMSLQ-MDPEYRVRKFLA 259 (272)
T ss_dssp HHHHHHTT-SCGGGHHHHHHH
T ss_pred HHHHHHhh-hchHHHHHHHHH
Confidence 44443332 223345555554
No 186
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.98 E-value=3.1e-05 Score=86.24 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=102.4
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.+..++.+..++.... ...++.+.|++|+|||++|+.+++. .. ...+.+..+.. . ...+++.+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHH
Confidence 568999999999999998543 3457788888999999999999873 32 12334443321 1 11112211
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC-ccChHHHHHhhhCCCCCcEEEEecCChh-----HHhhhC
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED-YRKWEPLQQLLKQGHKGSRVLVTSRTAR-----VSQIMG 324 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~-----v~~~~~ 324 (1208)
....... ...+++-+||+||+.... ....+.+...+.....+.++|+||.... +...+
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~- 157 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC- 157 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS-
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC-
Confidence 1110000 012467899999996654 3445556655544345567888877543 22322
Q ss_pred CCCcEeCCCCChhHHHHHH-------HHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHH
Q 000962 325 IRSPYLLEYLPEDQCWSIF-------KKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAV 380 (1208)
Q Consensus 325 ~~~~~~l~~L~~~~~~~lf-------~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai 380 (1208)
..+++++++.++-.+++ ...+...+.. .. ..++...|++.++|.+-.+
T Consensus 158 --~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~----~~--~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 158 --RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIA----IA--DMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp --EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCC----BS--CHHHHHHHHHHTCSCTTHH
T ss_pred --cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCC----CC--cHHHHHHHHHhCCCCHHHH
Confidence 47899999988743332 2222221110 00 0266778888888876543
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.97 E-value=7.8e-05 Score=82.89 Aligned_cols=168 Identities=17% Similarity=0.061 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC
Q 000962 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS 259 (1208)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~ 259 (1208)
...+..+...+. .....+.|+|++|+||||||+.+++. ....-..++++++. .+..++...+...
T Consensus 23 ~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~--- 87 (324)
T 1l8q_A 23 YEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG--- 87 (324)
T ss_dssp HHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC---
Confidence 344455544332 23456889999999999999999983 22111223455433 2333333332211
Q ss_pred CCcHHHHHHHHHHHhcCCceEEEEecCCCCCc--cChHHHHHhhhC-CCCCcEEEEecCCh---------hHHhhhCCCC
Q 000962 260 TSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--RKWEPLQQLLKQ-GHKGSRVLVTSRTA---------RVSQIMGIRS 327 (1208)
Q Consensus 260 ~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~ 327 (1208)
.... +.+.+. +.-+|++||+..... ...+.+...+.. ...|.+||+||... .+...+....
T Consensus 88 --~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~ 160 (324)
T 1l8q_A 88 --TINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 160 (324)
T ss_dssp --CHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSE
T ss_pred --cHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCce
Confidence 1111 222222 367999999954322 112334433321 12455788877632 2333444446
Q ss_pred cEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH
Q 000962 328 PYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL 378 (1208)
Q Consensus 328 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL 378 (1208)
.+++++ +.++..+++...+...+.. --.++...|++.+ |..-
T Consensus 161 ~i~l~~-~~~e~~~il~~~~~~~~~~-------l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 161 LVEIEL-DNKTRFKIIKEKLKEFNLE-------LRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp EEECCC-CHHHHHHHHHHHHHHTTCC-------CCHHHHHHHHHHC-SSHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHhC-CCHH
Confidence 789999 9999999998887543221 1135567788888 6653
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.94 E-value=1.4e-05 Score=76.73 Aligned_cols=114 Identities=22% Similarity=0.157 Sum_probs=69.2
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1208)
.++|+...+.++.+.+..-. .. ..-|.|+|.+|+|||++|+.+++... +.... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a---~~-~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS---ET-DIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT---TC-CSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHh---CC-CCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc---------
Confidence 47899999999888775322 11 22367999999999999999997321 11112 23 555543222
Q ss_pred HcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCC
Q 000962 252 FHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRT 316 (1208)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 316 (1208)
.. ....+.. .+.-.|++|++..........+...+.......+||+||..
T Consensus 66 ---------~~---~~~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQ---LNDFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SC---HHHHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hh---hhcHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 01 1111111 13357899999766555556677777555556678887764
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=3.4e-06 Score=82.23 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=47.9
Q ss_pred ccceeeecCCC-CCccccCCCCCCCCCEEeecCCCCCCcC--CCCCC----CCCcceEEEcCCCCCcCCcccCCCCCCCC
Q 000962 971 RLQLLALEGCP-DGTLVRAIPETSSLNFLILSKISNLDSF--PRWPN----LPGLKALYIRDCKDLVSLSGEGALQSLTS 1043 (1208)
Q Consensus 971 ~L~~L~L~~~~-~~~~~~~l~~l~~L~~L~ls~n~~~~~~--~~~~~----l~~L~~L~L~~c~~l~~~~~~~~l~~l~~ 1043 (1208)
.|+.|++++|. .......+.+|++|+.|+|++|..++.. ..+.. .++|++|+|++|..+++-.. ..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 45666666665 2233344566777777777777654421 11222 23577777777766655433 23455666
Q ss_pred cCeEeecCCCCCcc
Q 000962 1044 LNLLSIRGCPKLET 1057 (1208)
Q Consensus 1044 L~~L~l~~~~~l~~ 1057 (1208)
|+.|+|++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 66666666665443
No 190
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.86 E-value=0.0002 Score=80.44 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=103.0
Q ss_pred CccccchhhHHHHHHHHcCC----CC--CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSD----EF--DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.+..++.+.+++... .. ......+.|.|+|++|+|||++|+.+++. .... .+.+.++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcc--
Confidence 46899999999988876421 00 00123457899999999999999999873 3222 234444322110
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-----------cChHHHHHhhhC----CCCCcE
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQ----GHKGSR 309 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~----~~~gs~ 309 (1208)
........+...+...-..++.+|+||++..... .....+...+.. ...+..
T Consensus 157 -------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 157 -------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred -------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 0011111122222222235678999999932100 112233333332 123445
Q ss_pred EEEecCChh-HHhhh--CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCC-ChHHHHHHHh
Q 000962 310 VLVTSRTAR-VSQIM--GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKG-LPLAVKAIAG 385 (1208)
Q Consensus 310 iivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLai~~~~~ 385 (1208)
||.||.... +...+ .....+.+...+.++..+++...+...... -..+....|++.+.| .+-.|..+..
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-------l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-------LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-------CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-------ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 665665432 21111 223467888999999999988776433211 113456788888888 4555555443
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.85 E-value=0.00024 Score=78.68 Aligned_cols=185 Identities=14% Similarity=0.116 Sum_probs=104.4
Q ss_pred CccccchhhHHHHHHHHcCC----C--CCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSD----E--FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.+..++.+..++... . .......+-|.++|++|+|||+||+.+++ .....| +.|.++ .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchH------H
Confidence 56899999999998877210 0 00122345789999999999999999998 333322 223221 1
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCcc-----------ChHHHHHhhh---CCCCCcEE
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR-----------KWEPLQQLLK---QGHKGSRV 310 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~-----------~~~~l~~~l~---~~~~gs~i 310 (1208)
+ ..... ......+...+...-..++.+|+||++...... ....+...+. ....+..|
T Consensus 87 l----~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 87 L----VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp H----HTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred H----hhccc-----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 1 11000 111112222222222456789999999532110 0233333332 23345566
Q ss_pred EEecCChh-----HHhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCC-hHHHHHHH
Q 000962 311 LVTSRTAR-----VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAIA 384 (1208)
Q Consensus 311 ivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~~ 384 (1208)
|.||.... +.. .....+.+...+.++-.++|..++....... -......|++.+.|. +-.|..+.
T Consensus 158 i~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-------~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 158 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL-------TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-------CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-------CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66776532 222 2345678889999999999998875433211 123456888888874 44444443
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.85 E-value=0.0006 Score=75.17 Aligned_cols=187 Identities=16% Similarity=0.126 Sum_probs=102.8
Q ss_pred CccccchhhHHHHHHHHcC----CCC--CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLS----DEF--DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.++.++.+.+.+.. +.. ......+-|.++|++|+|||+||+.+++... ...| +.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHHh---
Confidence 4688999888888776531 100 0122346788999999999999999998320 2111 2233322110
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc------cC-----hHHHHHhhhC---CCCCcEE
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY------RK-----WEPLQQLLKQ---GHKGSRV 310 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~------~~-----~~~l~~~l~~---~~~gs~i 310 (1208)
. ........+...+...-..++.+|++|++..... .. ...+...+.. ...+..|
T Consensus 85 -----------~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 -----------K-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------S-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------h-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0 0111222222222222246788999999954210 01 1223333322 2344555
Q ss_pred EEecCChh-----HHhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCC-hHHHHHHH
Q 000962 311 LVTSRTAR-----VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAIA 384 (1208)
Q Consensus 311 ivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~~ 384 (1208)
|.||.... +.. .....+.+...+.++..+++..+....... -.......|++.+.|. +-.|..+.
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~-------l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNS-------LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBC-------CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 65665432 222 334577899999999999998876433211 1134567888999887 44455444
Q ss_pred h
Q 000962 385 G 385 (1208)
Q Consensus 385 ~ 385 (1208)
.
T Consensus 224 ~ 224 (322)
T 1xwi_A 224 R 224 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=0.00016 Score=80.79 Aligned_cols=176 Identities=14% Similarity=0.190 Sum_probs=104.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccc-eeEEEEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 249 (1208)
..++|.+..++.+..++..+. ...+.++|+.|+||||+|+.++.... ...+. .+.-+..+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 357898888888888887643 33389999999999999999987311 11111 111122222111
Q ss_pred HHHcccCCCCCCcHHHHHHHHHHHh------cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh-HHhh
Q 000962 250 IEFHSKMEQSTSSISLLETRLLEFL------TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR-VSQI 322 (1208)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~L------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~ 322 (1208)
.+.+.+.+.... .+.+-++|+|++........+.+...+.......++|++|.... +...
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 122222222211 23467899999965544455666666655455667777765432 1111
Q ss_pred -hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHH
Q 000962 323 -MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVK 381 (1208)
Q Consensus 323 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~ 381 (1208)
......+++.+++.++..+.+...+-..+.. -..+..+.|++.++|.+--+.
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~-------i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLK-------LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC-------BCHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHcCCCHHHHH
Confidence 1222478899999999888887766332211 113566788888888876443
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=4.8e-06 Score=83.89 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=37.8
Q ss_pred HHHHhccCCcccEEecCCC-CCc-----ccccccccCCcccEEeecCCCcc-----ccchhhccCCcccEEecCCCcccc
Q 000962 583 LDKIFHQLKYLRLLDLSSS-TLT-----VLPDSVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGCIWIM 651 (1208)
Q Consensus 583 ~~~~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~ 651 (1208)
+...+...+.|++|+|++| .+. .+...+...++|++|+|++|.|. .+...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3344444555555555554 443 12333444445555555555443 123334444455555555544221
Q ss_pred c----cchhcccccccceeec
Q 000962 652 E----LPKDLANLVKLRNLEL 668 (1208)
Q Consensus 652 ~----lp~~i~~L~~L~~L~l 668 (1208)
. +...+...++|++|++
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHHHhCCCceEEEe
Confidence 1 2333344444555555
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.80 E-value=0.00041 Score=77.73 Aligned_cols=185 Identities=14% Similarity=0.129 Sum_probs=101.7
Q ss_pred CccccchhhHHHHHHHHcCC----CC--CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSD----EF--DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.+..++.+...+... .. ......+-|.|+|++|+|||+||+.+++. ....| +.|.++ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46899999999988776311 00 01122345789999999999999999983 33222 222221 1
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCcc-----------ChHHHHHhhhC---CCCCcEE
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR-----------KWEPLQQLLKQ---GHKGSRV 310 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~-----------~~~~l~~~l~~---~~~gs~i 310 (1208)
+. ... .......+...+...-..++.+|+||++...... ....+...+.. ...+..|
T Consensus 120 l~----~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV----SKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh----hhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 110 0111122222222222457899999999543211 02333333321 2345556
Q ss_pred EEecCChh-----HHhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCC-hHHHHHHH
Q 000962 311 LVTSRTAR-----VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAIA 384 (1208)
Q Consensus 311 ivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~~ 384 (1208)
|.||.... +.. .....+.+...+.++-.+++..++...... --......|++.+.|. +-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~-------~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSV-------LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBC-------CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCC-------CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66776442 222 334577899999999999998877543211 0133456788888884 43444443
No 196
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.79 E-value=3.2e-05 Score=77.62 Aligned_cols=121 Identities=14% Similarity=0.229 Sum_probs=65.4
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHccc
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK 255 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 255 (1208)
....++.+..++..-. ......+.|+|+.|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 4455555555554432 1224689999999999999999999842212222 233443 33444444433322
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChH--HHHHhhhCC-CCCcEEEEecCC
Q 000962 256 MEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWE--PLQQLLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 256 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 316 (1208)
... ......+ . +.-+|||||++....+.|. .+...+... ..|..||+||..
T Consensus 89 ~~~-----~~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD-----TKFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC-----SHHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH-----HHHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 1222222 2 4568999999743333342 333333322 256778888874
No 197
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.79 E-value=3.3e-05 Score=79.20 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=63.3
Q ss_pred hhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCC
Q 000962 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME 257 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~ 257 (1208)
..++.+..++.... .......+.|+|.+|+|||+||+.+++. .......++|+++. .+...+......
T Consensus 36 ~~~~~~~~~~~~~~--~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYE--PGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCC--SSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhh--hccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 34555666665432 1112267889999999999999999983 33333456676553 344444332211
Q ss_pred CCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHH--HHH-hhhCC-CCCcEEEEecCC
Q 000962 258 QSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEP--LQQ-LLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 258 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~iivTtR~ 316 (1208)
.........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112233333322 2399999996644334322 222 22211 234568888874
No 198
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.75 E-value=3e-05 Score=78.02 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=87.6
Q ss_pred cccCCCCceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCCCc-----ccccccccCCcccEEeecCCCccc---
Q 000962 557 VVENSKKLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIKV--- 628 (1208)
Q Consensus 557 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~--- 628 (1208)
.+...+.|++|.+.....-...-...+...+...+.|++|+|++|.+. .+...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 456788999999971101111122345567788899999999999987 355667777899999999999883
Q ss_pred --cchhhccCCcccEEec--CCCccccc----cchhcccccccceeeccccccc
Q 000962 629 --LPNSICNLYNLQTLKL--IGCIWIME----LPKDLANLVKLRNLELEEMFWF 674 (1208)
Q Consensus 629 --lp~~i~~L~~L~~L~L--~~~~~~~~----lp~~i~~L~~L~~L~l~~n~~~ 674 (1208)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5778888999999999 77875432 4445566789999999998664
No 199
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.75 E-value=0.00068 Score=74.20 Aligned_cols=184 Identities=15% Similarity=0.113 Sum_probs=100.2
Q ss_pred CccccchhhHHHHHHHHcCCCC------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.+..++.+.+++..+.. .-....+.+.|+|++|+||||+|+.+++. ....| +.+.++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHhh---
Confidence 4689999999998887633100 00122457899999999999999999973 32222 2333322110
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCcc-----------ChHHHHHhhhC---C--CCCc
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR-----------KWEPLQQLLKQ---G--HKGS 308 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~-----------~~~~l~~~l~~---~--~~gs 308 (1208)
. ............+......++.+|++|++...... ....+...+.. . +.+.
T Consensus 93 -----------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 -----------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp -----------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred -----------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 0 00111112222222223456789999999432110 01122222221 1 1345
Q ss_pred EEEEecCChh-----HHhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH-HHHH
Q 000962 309 RVLVTSRTAR-----VSQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKA 382 (1208)
Q Consensus 309 ~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~ 382 (1208)
.||.||.... +... ....+.+...+.++..+++...+...... -..+....+++.+.|.+- ++..
T Consensus 161 ~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~-------~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSP-------LDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp EEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCC-------SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHcCCCCHHHHHH
Confidence 5666776532 2222 33567788888888888888776433211 113456788888988775 4444
Q ss_pred H
Q 000962 383 I 383 (1208)
Q Consensus 383 ~ 383 (1208)
+
T Consensus 232 l 232 (297)
T 3b9p_A 232 L 232 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.73 E-value=0.00034 Score=76.51 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=99.9
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..++|.+..++++.+++...-. -.-...+.|.|+|++|+|||+||+.+++. ....| +.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~~-----i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCEE-----EEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCCE-----EEEE----hH
Confidence 4588999988888877643100 00123457899999999999999999983 33222 2222 22
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC--------------ccChHHHHHhhhC--CCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED--------------YRKWEPLQQLLKQ--GHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~--------------~~~~~~l~~~l~~--~~~g 307 (1208)
++..... + . ....+...+.......+.+|++|++.... ......+...+.. ...+
T Consensus 84 ~l~~~~~---g-~-----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMWF---G-E-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHHH---T-T-----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhhc---C-c-----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 3322221 1 1 11122233333334567999999994210 0012444444432 2345
Q ss_pred cEEEEecCChhHH-hh-h---CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHH
Q 000962 308 SRVLVTSRTARVS-QI-M---GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLA 379 (1208)
Q Consensus 308 s~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 379 (1208)
..||.||...+.. .. . .....+.+...+.++-.+++.......... ....+ ..+++.+.|.|=+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~----~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA----KDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC----SSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC----ccchH----HHHHHHcCCCCHH
Confidence 6677777655322 11 1 223578899999999889888776433211 11122 3555667776643
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=0.00024 Score=77.26 Aligned_cols=148 Identities=9% Similarity=0.030 Sum_probs=92.9
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc-cccccceeEEEEecC-CCChHHHHHHHHHHc
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTV-DYDLPRILKGMIEFH 253 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~ 253 (1208)
-++.++.+...+.... .+.+.++|+.|+||||+|+.+++... .+.......++..+. ...+. ..+++++.+
T Consensus 2 ~~~~~~~L~~~i~~~~------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id-~ir~li~~~ 74 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID-DIRTIKDFL 74 (305)
T ss_dssp --CHHHHHHHHHHTCS------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCC------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHH-HHHHHHHHH
Confidence 3455667777776542 67899999999999999999986310 111122234444332 12221 123333332
Q ss_pred ccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh-hHHhhhCCCCcEeCC
Q 000962 254 SKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA-RVSQIMGIRSPYLLE 332 (1208)
Q Consensus 254 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l~ 332 (1208)
.... ..+++-++|+|++...+....+.+...+......+.+|++|.+. .+...+... .+++.
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2111 12456799999997766666777888887666777777776543 444444444 89999
Q ss_pred CCChhHHHHHHHHHh
Q 000962 333 YLPEDQCWSIFKKIA 347 (1208)
Q Consensus 333 ~L~~~~~~~lf~~~a 347 (1208)
++++++..+.+...+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999888776
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.61 E-value=0.00085 Score=76.42 Aligned_cols=186 Identities=14% Similarity=0.142 Sum_probs=98.7
Q ss_pred CccccchhhHHHHHHHHcCCCC------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.+..++.+..++..... ......+-|.|+|.+|+|||++|+.+++. ....| +.+.++.-.. .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~--~ 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTS--K 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhc--c
Confidence 4689999999999887732100 00122457899999999999999999873 22222 2333322111 0
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-------cC----hHHHHHhhhC----CCCCcE
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-------RK----WEPLQQLLKQ----GHKGSR 309 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-------~~----~~~l~~~l~~----~~~gs~ 309 (1208)
. .......+...+...-..+..+|+||++..... .. ...+...+.. ......
T Consensus 188 ~-------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 Y-------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred c-------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 001111222222222234568999999943200 01 1122222221 123345
Q ss_pred EEEecCChh-HHhh-h-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChH-HHHHH
Q 000962 310 VLVTSRTAR-VSQI-M-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPL-AVKAI 383 (1208)
Q Consensus 310 iivTtR~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-ai~~~ 383 (1208)
||.||.... +-.. . .....+.+...+.++..+++...+...... -..+....|++.+.|..- +|..+
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-------l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-------LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-------SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 665665432 1111 1 223467889999999999998877543221 113456788888888544 55444
No 203
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.60 E-value=0.00089 Score=73.81 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=85.1
Q ss_pred CccccchhhHHHHHHHHcCC----CCC----CCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-
Q 000962 171 ANVFGRDDDKERILHMLLSD----EFD----EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD- 241 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~- 241 (1208)
..++|.+..++.+...+... ... .......+.|+|.+|+|||++|+.+++. .... .+.+.++.-..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~~~---~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--ANAP---FIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEcchhcccC
Confidence 45899999999988777541 000 0012346789999999999999999973 3222 23444433221
Q ss_pred ------hHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccC------------hHHHHHhhhC
Q 000962 242 ------LPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRK------------WEPLQQLLKQ 303 (1208)
Q Consensus 242 ------~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~------------~~~l~~~l~~ 303 (1208)
....++++...... .+.. .+++.+|+||++....... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11112222111100 0111 1236799999996544333 4555555543
Q ss_pred C----------CCCcEEEEecC----C-----hhHHhhhCCCCcEeCCCCChhHHHHHHHH
Q 000962 304 G----------HKGSRVLVTSR----T-----ARVSQIMGIRSPYLLEYLPEDQCWSIFKK 345 (1208)
Q Consensus 304 ~----------~~gs~iivTtR----~-----~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 345 (1208)
. ..+..+|.|+. . +.+...+ ...+.+.+++.++..+++..
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 2 12455666642 2 1222222 24689999999998888874
No 204
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.58 E-value=3e-05 Score=86.80 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=26.2
Q ss_pred cccCCcccEEeecCCCccccchhhccCCcccEEecCCCccccccchhcc--cccccceeecc
Q 000962 610 VEELKLLRYLDLSRTEIKVLPNSICNLYNLQTLKLIGCIWIMELPKDLA--NLVKLRNLELE 669 (1208)
Q Consensus 610 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~--~L~~L~~L~l~ 669 (1208)
+..+++|+.|+|++|.-..+|. + .+++|++|++..|.+.......+. .+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 4445555555555552122333 2 255566666555442222112222 45555555553
No 205
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.57 E-value=4.7e-05 Score=72.79 Aligned_cols=110 Identities=12% Similarity=0.101 Sum_probs=62.3
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1208)
.++|++..++++.+.+.... .. ..-|.|+|..|+|||++|+.+++... ..+.++++. +....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~---~~-~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~------~~~~~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA---KR-TSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE------YLIDM-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH---TC-SSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT------HHHHC--
T ss_pred CceeCCHHHHHHHHHHHHHh---CC-CCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh------CChHh--
Confidence 57899988888887765321 01 12367999999999999999987321 112222211 10000
Q ss_pred HcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCC-CCCcEEEEecCC
Q 000962 252 FHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGSRVLVTSRT 316 (1208)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 316 (1208)
. ..+.+. .+.-.|+||++..........+...+... ..+.+||+||..
T Consensus 67 --------------~-~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 --------------P-MELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------------H-HHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------------h-hhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1 111111 23457899999766544455566655433 345778887763
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.57 E-value=0.0042 Score=68.89 Aligned_cols=177 Identities=18% Similarity=0.209 Sum_probs=95.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.+..++.+...+..... .......+.|+|+.|+||||||+.++.. ....|.. ....-...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~~---~sg~~~~~--------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIHV---TSGPVLVK--------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEEE---EETTTCCS---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEEE---EechHhcC---------
Confidence 4578888777777666543200 0122457899999999999999999983 3222211 11100001
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC--------C----------CcEEE-
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH--------K----------GSRVL- 311 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~--------~----------gs~ii- 311 (1208)
..++...+ ..+ .++-++++|++..-.....+.+...+.... . .-.++
T Consensus 90 ------------~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 ------------QGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ------------HHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ------------HHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 11111111 112 234577889885433223344433332211 0 11222
Q ss_pred EecCChhHHhhh--CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 312 VTSRTARVSQIM--GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 312 vTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
.|++...+.... .....+.+++.+.++-.+++.+.+...+. .-..+.+..|+++++|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-------~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-------EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-------CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-------CcCHHHHHHHHHhcCCChHHHHHH
Confidence 355543332211 11235789999999999999887643221 112466889999999999654433
No 207
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.00081 Score=76.95 Aligned_cols=106 Identities=11% Similarity=0.151 Sum_probs=58.0
Q ss_pred ccccCCC-CceEEecccCCCccchhhhhHHHHhccCCcccEEecCCCC---Ccccc-cccccCCcccEEeecCCCccccc
Q 000962 556 SVVENSK-KLRTFLVPSFGEHLKDFGRALDKIFHQLKYLRLLDLSSST---LTVLP-DSVEELKLLRYLDLSRTEIKVLP 630 (1208)
Q Consensus 556 ~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp 630 (1208)
.+|.+++ .|+++.+. +.+..+-..+|.++.+|+.+.+..+. ++.++ ..|.++.+|+.+.+..+ ++.++
T Consensus 57 ~aF~~~~~~L~sI~iP------~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIP------DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp TTTTTCCSCCCEEEEC------TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred hhccCCCCcCEEEEEC------CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 3455553 46666665 12333444567777777777776543 44443 33666666666666544 44444
Q ss_pred h-hhccCCcccEEecCCCccccccc-hhcccccccceeeccc
Q 000962 631 N-SICNLYNLQTLKLIGCIWIMELP-KDLANLVKLRNLELEE 670 (1208)
Q Consensus 631 ~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~ 670 (1208)
. .|.++.+|+.+.+..+ ...++ ..+..+.+|+.+.+..
T Consensus 130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhhcccccccccce--eeeecccceecccccccccccc
Confidence 3 4666667777766532 22222 2345556666666544
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.56 E-value=0.00022 Score=83.00 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=102.1
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..++|.+..++++.+++...-. -+....+-|.|+|.+|+|||++|+.+++ .....| +.|.++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEch------
Confidence 4689999999999887653200 0012244688999999999999999987 333222 233321
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-----------cChHHHHHhhhC--CCCCcEE
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQ--GHKGSRV 310 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~--~~~gs~i 310 (1208)
.+ ...+ .......+...+.....+++.+|+||++..-.. .....+...+.. ...+.+|
T Consensus 273 ~l----~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 EI----MSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp HH----HTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred Hh----hhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 1111 011222333444444456788999999932110 112334444432 2334566
Q ss_pred EEecCChh-HHhh----hCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCC-hHHHHHH
Q 000962 311 LVTSRTAR-VSQI----MGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAI 383 (1208)
Q Consensus 311 ivTtR~~~-v~~~----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~ 383 (1208)
|.||.... +... ......+.+...+.++-.+++..++...... .... ..++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~----~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA----DDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC----TTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc----chhh----HHHHHHHccCCcHHHHHHH
Confidence 66776542 2111 1233468899999999999999876433211 1112 24566677664 4444433
No 209
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.55 E-value=0.00057 Score=75.41 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=75.3
Q ss_pred ccccchhhHHHHHHHHcCCC---CCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHH
Q 000962 172 NVFGRDDDKERILHMLLSDE---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKG 248 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 248 (1208)
.++|.+..++.+...+.... .........+.++|.+|+|||++|+.++.. ....-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 46788888888877765431 011233468999999999999999999973 22222234555555433221 1122
Q ss_pred HHHHcccCCCC-C-CcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEecC
Q 000962 249 MIEFHSKMEQS-T-SSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSR 315 (1208)
Q Consensus 249 i~~~~~~~~~~-~-~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 315 (1208)
+. +..... . .....+...+.. ...-+++||++..........+...+.... ....||+||.
T Consensus 95 l~---g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 LI---GAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp HH---CCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred hc---CCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 21 111110 1 111223333322 345799999997665555666666664321 2344777776
Q ss_pred C
Q 000962 316 T 316 (1208)
Q Consensus 316 ~ 316 (1208)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 210
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0014 Score=72.75 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=99.3
Q ss_pred CccccchhhHHHHHHHHcC----CCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLS----DEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
.++.|.++.+++|.+.+.- ++. -+-...+-|.++|++|.|||.||+++++ .....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 4678899888888765432 100 0123345688999999999999999998 344333 3344332211
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc--------c------ChHHHHHhhhC--CCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------R------KWEPLQQLLKQ--GHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~--------~------~~~~l~~~l~~--~~~g 307 (1208)
.........+...+...-+..+++|++|+++.--. . ....+...+.. ...+
T Consensus 221 -------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 01112222232333333346789999999953210 0 11223333332 2334
Q ss_pred cEEEEecCChhH-----HhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 308 SRVLVTSRTARV-----SQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 308 s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
-.||.||...+. ...-..+..+.+...+.++-.++|+.+.-..... ..-+ ..+|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~----~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT----RGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC----SSCC----HHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC----ccCC----HHHHHHHCCCCC
Confidence 456667765432 2212345788999999999999998776433211 1112 346677777654
No 211
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.52 E-value=0.0012 Score=76.36 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=100.4
Q ss_pred CccccchhhHHHHHHHHcC----CC-C-CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLS----DE-F-DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~-~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.+..++.+...+.. +. . ......+-|.|+|++|+|||+||+.+++. .. ..-++.++.. .
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~----~ 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSS----D 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHH----H
Confidence 4689999999988877631 11 0 01123467899999999999999999983 21 1123333321 1
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-------cChHHHH----HhhhC---CCCCcEE
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-------RKWEPLQ----QLLKQ---GHKGSRV 310 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-------~~~~~l~----~~l~~---~~~gs~i 310 (1208)
+.... .+. .......+.... -..++.+|+||++..... .....+. ..+.. ...+..|
T Consensus 204 l~~~~---~g~---~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LVSKW---LGE---SEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HHhhh---cch---HHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11110 010 112222222222 235678999999954311 1112222 22221 1345667
Q ss_pred EEecCChhHH-hh-h-CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCC-hHHHHHHH
Q 000962 311 LVTSRTARVS-QI-M-GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGL-PLAVKAIA 384 (1208)
Q Consensus 311 ivTtR~~~v~-~~-~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-PLai~~~~ 384 (1208)
|.||...... .. . .....+.+...+.++..++|..++..... .-.......|++.+.|. +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-------~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-------SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-------ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-------CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7677654221 11 1 23346788888888888999887743321 00124456788888884 43444443
No 212
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.52 E-value=0.0027 Score=72.60 Aligned_cols=104 Identities=14% Similarity=0.232 Sum_probs=53.9
Q ss_pred CCCCCCCCCEEeecCCCCCCcCC--CCCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeEeecCCCCCccCCCCCCc-
Q 000962 988 AIPETSSLNFLILSKISNLDSFP--RWPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLLSIRGCPKLETLPDEGLP- 1064 (1208)
Q Consensus 988 ~l~~l~~L~~L~ls~n~~~~~~~--~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~lp~~~~~- 1064 (1208)
.|.+|.+|+.+.+.++. ..+. .+.++++|+.+.+.. .++.++. ..|.++++|+.++|..+ ++.|....+.
T Consensus 260 aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~~--v~~I~~~aF~~ 332 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPE-SVFAGCISLKSIDIPEG--ITQILDDAFAG 332 (394)
T ss_dssp TTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEECCTT--CCEECTTTTTT
T ss_pred eeeecccccEEeccccc--ceecCcccccccccccccCCC--cccccCc-eeecCCCCcCEEEeCCc--ccEehHhHhhC
Confidence 45666666666665432 2222 245566666666642 2444543 45666666666666542 4555444443
Q ss_pred -CCCCEEEEecCCCCcccCCcCCCCCCCCCCceeecCC
Q 000962 1065 -TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYIEDC 1101 (1208)
Q Consensus 1065 -~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l~~c 1101 (1208)
.+|+.+.|.+ .++.++. ..|.+|++|+.+++.++
T Consensus 333 C~~L~~i~ip~--sv~~I~~-~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPE-SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEECT--TCCBCCG-GGGTTCTTCCEEEESSC
T ss_pred CCCCCEEEECc--ccCEEhH-hHhhCCCCCCEEEECCc
Confidence 4555555532 2444433 24555555555555543
No 213
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.50 E-value=2e-05 Score=83.20 Aligned_cols=96 Identities=22% Similarity=0.219 Sum_probs=66.4
Q ss_pred EecCCCCCcccccc----cccCCcccEEeecCCCcccc---chhhccCCcccEEecCCCccccccchhccccc--cccee
Q 000962 596 LDLSSSTLTVLPDS----VEELKLLRYLDLSRTEIKVL---PNSICNLYNLQTLKLIGCIWIMELPKDLANLV--KLRNL 666 (1208)
Q Consensus 596 L~L~~~~i~~lp~~----i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L 666 (1208)
++++.|....++.. ..++++|+.|+|++|.|+.+ |..+..+++|++|+|++|.+.+ + ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceE
Confidence 56666654444332 25688999999999998865 4677899999999999998443 3 3455555 89999
Q ss_pred ecccccccccccCC-------ccCCCCCcCcCCCce
Q 000962 667 ELEEMFWFKCSTLP-------AGIGKLTNLHNLHVF 695 (1208)
Q Consensus 667 ~l~~n~~~~~~~lp-------~~i~~l~~L~~L~l~ 695 (1208)
+|++|.+. +.+| ..+..+++|+.|+..
T Consensus 226 ~L~~Npl~--~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 226 WLDGNSLC--DTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp ECTTSTTG--GGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred EccCCcCc--cccCcchhHHHHHHHHCcccCeECCc
Confidence 99999765 2333 124566677776643
No 214
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.50 E-value=0.0005 Score=80.08 Aligned_cols=146 Identities=15% Similarity=0.185 Sum_probs=79.1
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccccc------ce-eEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHF------ES-RMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~-~~wv~~~~~~~~~ 243 (1208)
+.+|||+.+++++...+.... ..-+.|+|.+|+|||++|+.++. .+...+ +. .+.++++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~----- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMGT----- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCCc-----
Confidence 469999999999999997643 23457999999999999999987 332111 11 12222220
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHhh-
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQI- 322 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~- 322 (1208)
...+ ........+...+ -..++.+|++|. ..+....+...+.. ..-++|.+|........
T Consensus 247 --------~~~g--~~e~~~~~~~~~~---~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 --------KYRG--EFEDRLKKVMDEI---RQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHHHHHHH---HTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred --------cccc--hHHHHHHHHHHHH---HhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 0000 0011222222222 235678999991 11222333333332 23456665554431110
Q ss_pred ------hCCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 323 ------MGIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 323 ------~~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
......+.++..+.++..+++...+.
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 11123689999999999999987653
No 215
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.48 E-value=0.00034 Score=88.44 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=80.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc-----cc-c-eeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-----HF-E-SRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F-~-~~~wv~~~~~~~~~ 243 (1208)
+.+|||++++++++..+.... ..-+.++|.+|+||||+|+.+++. +.. .. + .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l~~-- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSLLA-- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC-------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHhhc--
Confidence 468999999999999997643 334689999999999999999983 211 01 1 223333321100
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc-CCceEEEEecCCCCC--------ccChHHHHHhhhCCCCCcEEEEec
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLT-GQRFLLVLDDVWNED--------YRKWEPLQQLLKQGHKGSRVLVTS 314 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTt 314 (1208)
...........+...+...-. +++.+|++|++.... .+....+...+.. + +-.+|.+|
T Consensus 240 -----------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~-~i~~I~at 306 (854)
T 1qvr_A 240 -----------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-G-ELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-T-CCCEEEEE
T ss_pred -----------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-C-CeEEEEec
Confidence 000001111222222222222 467899999995421 1111234444432 2 23455555
Q ss_pred CChhHH-----hh-hCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 315 RTARVS-----QI-MGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 315 R~~~v~-----~~-~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
...... .. ..-...+.+.+++.++..+++....
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 433221 11 1112358899999999999987543
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.44 E-value=0.00028 Score=75.80 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=67.0
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.+..+.++.+.+.... .....|.|+|..|+|||++|+.+++.. ...-...+.|+++.-. ...+...+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~~--~~~~~~~l 77 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN--ENLLDSEL 77 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGSC--HHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCCC--hhHHHHHh
Confidence 357899998888877665422 112357799999999999999999732 1111123445555432 22222111
Q ss_pred HHcccCCCC-CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCC-----------CCCcEEEEecCC
Q 000962 251 EFHSKMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-----------HKGSRVLVTSRT 316 (1208)
Q Consensus 251 ~~~~~~~~~-~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 316 (1208)
++..... ..........+. ....-+|+||++..........+...+... ..+.+||+||..
T Consensus 78 --~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 78 --FGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp --HCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred --cCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 1111000 000000000111 123469999999765544445566555432 134678888775
No 217
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.42 E-value=0.0001 Score=70.70 Aligned_cols=87 Identities=16% Similarity=0.058 Sum_probs=50.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
...++|+|..|+|||||++.++...... .+ .++++....-... .+..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~------------------------------~~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT------------------------------DAAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC------------------------------GGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH------------------------------HHHhC
Confidence 4589999999999999999999843221 11 2456654432211 01234
Q ss_pred ceEEEEecCCCCCccChHHHHHhhhCC-CCCc-EEEEecCC
Q 000962 278 RFLLVLDDVWNEDYRKWEPLQQLLKQG-HKGS-RVLVTSRT 316 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~ 316 (1208)
.-+|||||+.......-+.+...+... ..|. +||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 568899999554322233344443221 1233 48888884
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0022 Score=72.55 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=98.6
Q ss_pred CccccchhhHHHHHHHHcC----CCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLS----DEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
.++.|.++.+++|.+.+.- ++. .+-...+-|.++|++|.|||+||+++++ .....| +.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--
Confidence 5678899888887665532 100 0123456788999999999999999998 333333 3344332211
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc---------c-----ChHHHHHhhhC--CCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY---------R-----KWEPLQQLLKQ--GHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~---------~-----~~~~l~~~l~~--~~~g 307 (1208)
.........+...+...-...+++|++|+++.--. . ....+...+.. ...+
T Consensus 254 -------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 -------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 01111222222223333346789999999953110 0 01233333332 2344
Q ss_pred cEEEEecCChhHHhh--hC---CCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 308 SRVLVTSRTARVSQI--MG---IRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 308 s~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
..||.||-..+.... .. .+..+.+...+.++-.++|+.+....... ...+ ...+++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~----~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT----GEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC----SCCC----HHHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC----cccC----HHHHHHhCCCCC
Confidence 567777775543221 11 23467888888888888888776443221 1112 246677777654
No 219
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.34 E-value=0.0023 Score=68.22 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=82.6
Q ss_pred CccccchhhHHHHHHHH---cCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHML---LSDEFD---EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.+..++++.+.+ .....- .....+-+.|+|++|+||||+|+.+++. ....| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 46889988877765543 221100 0111234789999999999999999973 22222 3333221110
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc--------------cChHHHHHhhhC--CCCCc
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------------RKWEPLQQLLKQ--GHKGS 308 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~gs 308 (1208)
. ........+...+.........++++|++..... .....+...+.. ...+.
T Consensus 84 -----------~-~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -----------M-FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -----------S-CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -----------H-hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 0 0011222333333333345668999999832100 011222222322 23445
Q ss_pred EEEEecCChh-HHhhh----CCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 309 RVLVTSRTAR-VSQIM----GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 309 ~iivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
.||.||...+ +.... .....+.+...+.++-.+++..+..
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~ 196 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 196 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 6777776543 21111 1234677888888888888877653
No 220
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.33 E-value=0.00038 Score=77.82 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=31.7
Q ss_pred cCCcccEEeecCCCccc-cchhh---ccCCcccEEecCCCccccc----cchhcccccccceeecccccc
Q 000962 612 ELKLLRYLDLSRTEIKV-LPNSI---CNLYNLQTLKLIGCIWIME----LPKDLANLVKLRNLELEEMFW 673 (1208)
Q Consensus 612 ~l~~Lr~L~L~~~~i~~-lp~~i---~~L~~L~~L~L~~~~~~~~----lp~~i~~L~~L~~L~l~~n~~ 673 (1208)
.+++|++|+|++|.+.. .+..+ ..+++|++|+|+.|.+... ++..+.++++|+.|+++.|.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 35566666666665542 22222 2355666666666553321 333344556666666665543
No 221
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.30 E-value=0.0004 Score=75.83 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=82.2
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc-cccccceeEEEEecCCCChHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER-VREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
..++|+...+.++.+.+..-. .....|.|+|.+|+|||++|+.+++... ....| +.|+++.-. ..++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~--~~l~~~~ 72 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALN--ESLLESE 72 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCC--HHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCC--hHHHHHH
Confidence 357899999988888775432 1123567999999999999999987321 11222 334444322 2222221
Q ss_pred HHHcccCCCC-CCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEecCCh
Q 000962 250 IEFHSKMEQS-TSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTSRTA 317 (1208)
Q Consensus 250 ~~~~~~~~~~-~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 317 (1208)
+ ++..... ..........+.. . ..-.|+||++..........+...+.... ...+||.||...
T Consensus 73 l--fg~~~g~~tg~~~~~~g~~~~--a-~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 73 L--FGHEKGAFTGADKRREGRFVE--A-DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp H--TCCCSSCCC---CCCCCHHHH--H-TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred h--cCccccccCchhhhhcCHHHh--c-CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 1 1111100 0000000011111 1 23579999997655444555666665331 346788877653
Q ss_pred ---hH---------HhhhCCCCcEeCCCCC--hhHHHHHHH
Q 000962 318 ---RV---------SQIMGIRSPYLLEYLP--EDQCWSIFK 344 (1208)
Q Consensus 318 ---~v---------~~~~~~~~~~~l~~L~--~~~~~~lf~ 344 (1208)
.+ ...+. ...+.+.+|. .+|...++.
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHH
Confidence 11 11111 2346788887 455554443
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0023 Score=72.06 Aligned_cols=179 Identities=16% Similarity=0.084 Sum_probs=97.6
Q ss_pred CccccchhhHHHHHHHHcC----CCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLS----DEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..+.|.++.+++|.+.+.- ++. -+-...+-|.++|++|.|||+||+++++ +....| +.|..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--
Confidence 4678899888888765421 100 0123456788999999999999999998 344333 3333332111
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc--------c------ChHHHHHhhhC--CCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------R------KWEPLQQLLKQ--GHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~--------~------~~~~l~~~l~~--~~~g 307 (1208)
.........+...+...-...+++|++|++...-. . ....+...+.. ...+
T Consensus 282 -------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 -------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 01112222233333333346789999999953210 0 01122223322 2234
Q ss_pred cEEEEecCChhH-----HhhhCCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 308 SRVLVTSRTARV-----SQIMGIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 308 s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
-.||.||-..+. .+.-..+..+++...+.++-.++|+.+....... ..-+ ...|++.+.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~----~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE----RGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC----SSCC----HHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC----CCCC----HHHHHHHCCCCC
Confidence 455667754332 1111345678898889999999998776433211 1112 245677777753
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0026 Score=71.80 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=83.8
Q ss_pred CccccchhhHHHHHHHHcCC----CC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSD----EF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
.++.|.++.+++|.+.+.-+ +. -+-...+-|.++|++|+|||+||+++++ .....| +.|+.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhc--
Confidence 46789998888887655321 00 0123356688999999999999999998 333333 3344332211
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCC--------CCc-c-----ChHHHHHhhh--CCCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWN--------EDY-R-----KWEPLQQLLK--QGHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~--------~~~-~-----~~~~l~~~l~--~~~~g 307 (1208)
.........+...+...-...+++|++|+++. ... . ....+...+. ....+
T Consensus 245 -------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 -------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp -------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred -------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 01112222233333333346789999999931 000 1 1223333333 22345
Q ss_pred cEEEEecCChhH-----HhhhCCCCcEeCCCCC-hhHHHHHHHHHhc
Q 000962 308 SRVLVTSRTARV-----SQIMGIRSPYLLEYLP-EDQCWSIFKKIAF 348 (1208)
Q Consensus 308 s~iivTtR~~~v-----~~~~~~~~~~~l~~L~-~~~~~~lf~~~a~ 348 (1208)
-.||.||...+. ......+..+++..++ .++-.++|..+.-
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~ 358 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS 358 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 566777765432 1111223467776564 4555566766654
No 224
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.19 E-value=0.019 Score=65.07 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=55.1
Q ss_pred cccceeeecCCCCCccccCCCCCCCCCEEeecCCCCCCcCCC--CCCCCCcceEEEcCCCCCcCCcccCCCCCCCCcCeE
Q 000962 970 QRLQLLALEGCPDGTLVRAIPETSSLNFLILSKISNLDSFPR--WPNLPGLKALYIRDCKDLVSLSGEGALQSLTSLNLL 1047 (1208)
Q Consensus 970 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~--~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L 1047 (1208)
.+|+.+.+..+-.......+.++.+|+.+.+..+ ++.+.. +..+.+|+.+.+..+ +..++. ..|.++++|+.+
T Consensus 217 ~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~-~aF~~c~~L~~i 291 (379)
T 4h09_A 217 KNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPY-LLCSGCSNLTKV 291 (379)
T ss_dssp SSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECT-TTTTTCTTCCEE
T ss_pred cccceeeeccceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccc-cccccccccccc
Confidence 3444444433322222234445555665555443 222322 345555555555432 333332 345555666666
Q ss_pred eecCCCCCccCCCCCCc--CCCCEEEEecCCCCcccCCcCCCCCCCCCCceee
Q 000962 1048 SIRGCPKLETLPDEGLP--TSLKCLIIASCSGLKSLGPRGTLKSLNSLKDFYI 1098 (1208)
Q Consensus 1048 ~l~~~~~l~~lp~~~~~--~~L~~L~l~~c~~l~~lp~~~~l~~l~~L~~L~l 1098 (1208)
.+.++ .++.|+...+. .+|+.+.|.+ .++.++. ..|.+|++|+.+.+
T Consensus 292 ~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~i 340 (379)
T 4h09_A 292 VMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV-YAFKNCKALSTISY 340 (379)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCCCCC
T ss_pred ccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH-HHhhCCCCCCEEEE
Confidence 55543 24445444333 4555555532 2444443 24555555555544
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.0022 Score=80.01 Aligned_cols=147 Identities=15% Similarity=0.214 Sum_probs=79.5
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhccccccc-----ccceeEEEEecCCCChHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVRE-----HFESRMWVCVTVDYDLPRI 245 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~wv~~~~~~~~~~~ 245 (1208)
..+|||+.+++++...+.... ..-+.++|.+|+|||++|+.+++. +.. .....-++.+.-.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~g------ 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEeccc------
Confidence 469999999999999997643 234679999999999999999873 211 0001111111110
Q ss_pred HHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHhhh--
Q 000962 246 LKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQIM-- 323 (1208)
Q Consensus 246 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~-- 323 (1208)
.... ........ ..+...-..++.+|++|.- . +....+...+. ...-++|.||.........
T Consensus 246 -----~~~~--G~~e~~l~---~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 246 -----TKYR--GEFEDRLK---KVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp --------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----cccc--chHHHHHH---HHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 0000 00011222 2233333467889999921 1 22222333332 2235566666543311100
Q ss_pred -----CCCCcEeCCCCChhHHHHHHHHHh
Q 000962 324 -----GIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 324 -----~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
.....+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111468999999999999998655
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.0012 Score=82.41 Aligned_cols=156 Identities=18% Similarity=0.236 Sum_probs=88.4
Q ss_pred CccccchhhHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 4689999999888877754321 11233457999999999999999999973 21212233445544322110
Q ss_pred HHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCC-----------CCCcEEEEecCC
Q 000962 248 GMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQG-----------HKGSRVLVTSRT 316 (1208)
Q Consensus 248 ~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 316 (1208)
......+...+++ ...-+|+||++..........+...+..+ ....+||+||..
T Consensus 565 ------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0001111222222 33459999999776656666677666532 134688888873
Q ss_pred h-----hH----Hhhh------CCCCcEeCCCCChhHHHHHHHHHh
Q 000962 317 A-----RV----SQIM------GIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 317 ~-----~v----~~~~------~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
. .+ ...+ .....+.+.++++++-.+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 11 1111 112467788888877777665543
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.12 E-value=0.0028 Score=73.68 Aligned_cols=93 Identities=14% Similarity=0.019 Sum_probs=58.6
Q ss_pred EEEEecCCCCCccChHHHHHhhhCCCCCcEEE-Ee---------cC----C----hhHHhhhCCCCcEeCCCCChhHHHH
Q 000962 280 LLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVL-VT---------SR----T----ARVSQIMGIRSPYLLEYLPEDQCWS 341 (1208)
Q Consensus 280 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vT---------tR----~----~~v~~~~~~~~~~~l~~L~~~~~~~ 341 (1208)
++++|++...+.+.++.+...+...... -+| .| |. . +.+...+ ..+.+.+++.++..+
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHHH
Confidence 8999999777666777787777654444 344 34 32 1 1133322 457999999999999
Q ss_pred HHHHHhccCCCCCccccchhhHHHHHHHHHhc-CCChHHHHHH
Q 000962 342 IFKKIAFNQGNFSSRMQQQNLEAIGREIVGKC-KGLPLAVKAI 383 (1208)
Q Consensus 342 lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c-~g~PLai~~~ 383 (1208)
.+...+...+.. -.++....|++.+ +|.|-.+..+
T Consensus 374 iL~~~~~~~~~~-------~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 374 IIKIRAQTEGIN-------ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHTCC-------BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHhCCC-------CCHHHHHHHHHHccCCCHHHHHHH
Confidence 998776322211 1135567777777 7777654433
No 228
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.11 E-value=0.0019 Score=80.79 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=85.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccc---ccc-ccceeEEEEecCCCChHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEER---VRE-HFESRMWVCVTVDYDLPRIL 246 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~-~F~~~~wv~~~~~~~~~~~~ 246 (1208)
..++||+.+++++.+.|.... ..-+.|+|.+|+||||+|+.+++... +.. .....+|. +. ...+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~----~~~l- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LD----IGSL- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CC----CC---
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-Ec----HHHH-
Confidence 468999999999999997643 34568999999999999999987321 010 11222221 11 0000
Q ss_pred HHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCCCc-----cChHHHHHhhhC--CCCCcEEEEecCChh
Q 000962 247 KGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNEDY-----RKWEPLQQLLKQ--GHKGSRVLVTSRTAR 318 (1208)
Q Consensus 247 ~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~~-----~~~~~l~~~l~~--~~~gs~iivTtR~~~ 318 (1208)
..... ...........+.+.+ +.++.+|++||+..... ..-......+.. ...+.++|.+|....
T Consensus 254 ------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 ------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_dssp -------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHH
T ss_pred ------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchH
Confidence 00011 1112222222233333 34678999999954300 011122222221 123456666665443
Q ss_pred HHhhhC-------CCCcEeCCCCChhHHHHHHHHHh
Q 000962 319 VSQIMG-------IRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 319 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
...... ....+.+...+.++..+++...+
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 221111 11258899999999998887654
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.07 E-value=0.0029 Score=72.82 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=96.2
Q ss_pred CccccchhhHHHHHHHHc---CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLL---SDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.++.++++.+... .... -+....+-|.|+|++|+|||+||+.++.. ....| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 458899887777665532 2100 00111234789999999999999999983 33222 23333322110
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc--------------cChHHHHHhhhC--CCCCc
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------------RKWEPLQQLLKQ--GHKGS 308 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~gs 308 (1208)
. .......+...+.......+.+|+||++..-.. .....+...+.. ...+.
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 011112233334444456789999999943211 012233333321 23456
Q ss_pred EEEEecCChhHHhh--h---CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 309 RVLVTSRTARVSQI--M---GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 309 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
.||.||...+.... . .....+.+...+.++-.+++..++...... .... ...+++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~----~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA----EDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC----TTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc----chhh----HHHHHHhcCCCc
Confidence 67777776543221 1 123477888888888888887766432211 1111 234777887776
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0023 Score=72.33 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=86.8
Q ss_pred CccccchhhHHHHHHHHc----CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLL----SDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..+.|.++.+++|.+.+. .++. .+-...+-|.++|++|.|||.||+++++ .....| +.|+.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhhhh--
Confidence 567899988888876532 2110 0123356788999999999999999998 333333 2333332111
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCC-------Ccc---C----hHHHHHhhhC--CCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNE-------DYR---K----WEPLQQLLKQ--GHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~-------~~~---~----~~~l~~~l~~--~~~g 307 (1208)
.........+...+...-...+++|++|+++.- ... . ...+...+.. ...+
T Consensus 254 -------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 254 -------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 001111122222222222356899999998320 000 1 1123333332 2234
Q ss_pred cEEEEecCChhHHhh-h----CCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 308 SRVLVTSRTARVSQI-M----GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 308 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
-.||.||...+.... + ..+..+.+...+.++-.++|+.+...
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK 367 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC
Confidence 456667765543221 1 22357888888888888888776643
No 231
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.007 Score=67.39 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=86.7
Q ss_pred CccccchhhHHHHHHHHcC----CCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLS----DEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
.++.|.++.+++|.+.+.- ++. .+-...+-|.++|++|.|||.||+++++ .....| +.|+.+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHhhh--
Confidence 4577888888887665432 110 0123356789999999999999999998 333333 2233322111
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc--------c------ChHHHHHhhhC--CCCC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------R------KWEPLQQLLKQ--GHKG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~--------~------~~~~l~~~l~~--~~~g 307 (1208)
.........+...+...-+..+++|++|+++..-. . ....+...+.. ...+
T Consensus 255 -------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 255 -------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred -------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 01111222222222222346789999999853110 0 11223332321 2334
Q ss_pred cEEEEecCChhHHhh-h----CCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 308 SRVLVTSRTARVSQI-M----GIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 308 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
..||.||-..+.... + ..+..+.+...+.++-.++|..+.-.
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 456667765543221 1 12346778888888888898877643
No 232
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.95 E-value=0.013 Score=66.39 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=46.7
Q ss_pred ccCCCCCCcEEEEeeeCCCCCCcccccCCCCceeEEEEeCcCCCCcc--ccCCCCCccEEEEeCCCCceecC--CCCCCc
Q 000962 770 DLQPHPNLEELQIFNYFGNSLPQWMRDGRLQNLVSLTLKGCTNCRIL--SLGQLSSLRVLNIKGMLELEKWP--NDEDCR 845 (1208)
Q Consensus 770 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~--~~~~~~ 845 (1208)
.+..+.+|+.+.+.+. ...++...+ ..+.+|+.+.+.++.+.... .|.++++|+.+.|..+ +..++ .+.+|.
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~ 333 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLC-SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTT-TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred ccceeehhcccccccc-ceecccccc-ccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCC
Confidence 4555667777777543 233443332 45778888888776554433 6777888888887543 33333 345555
Q ss_pred ccccccc
Q 000962 846 FLGRLKI 852 (1208)
Q Consensus 846 ~L~~L~l 852 (1208)
+|+.+.+
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 5655544
No 233
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.93 E-value=0.00034 Score=75.28 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=80.3
Q ss_pred CccccchhhHHHHHHHHcC---CCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHMLLS---DEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.+..++.+.+.+.. ... ......+-+.|+|++|+|||++|+.+++. ....|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHHH---
Confidence 4588998888777765531 000 00011223779999999999999999983 322221 111111100
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc---------------cChHHHHHhhhCC---CC
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY---------------RKWEPLQQLLKQG---HK 306 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~---------------~~~~~l~~~l~~~---~~ 306 (1208)
..... .......+.. .....+..+|++||+..... .....+...+... ..
T Consensus 83 -------~~~~~--~~~~~~~~~~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 -------MFVGL--GASRVRDLFE---TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------SCSSS--CSSSSSTTHH---HHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------hhcch--HHHHHHHHHH---HHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 00000 0111111222 22234668999999943211 0122233323211 12
Q ss_pred CcEEEEecCChhHHh-h-h---CCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 307 GSRVLVTSRTARVSQ-I-M---GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 307 gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
...||.||....... . . .....+.+...+.++-.+++...+.
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 245777776553211 1 1 2235678888888888888877663
No 234
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.88 E-value=0.002 Score=71.61 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=85.5
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHH
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIE 251 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 251 (1208)
.++|++..++.+...+.... -+.++|.+|+|||+||+.+++ .....| ..+.+.......++. .
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~----g 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLI----G 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHH----E
T ss_pred ceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcC----C
Confidence 47899999998888876532 578999999999999999987 333322 223333333333221 1
Q ss_pred HcccCCCCCCcHHHHHHHHHHHhcC--CceEEEEecCCCCCccChHHHHHhhhCC-----------CCCcEEEEecCCh-
Q 000962 252 FHSKMEQSTSSISLLETRLLEFLTG--QRFLLVLDDVWNEDYRKWEPLQQLLKQG-----------HKGSRVLVTSRTA- 317 (1208)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~- 317 (1208)
........ ... .+-.+ ...++++|++..........+...+... .....||.|+...
T Consensus 91 ~~~~~~~~-~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 91 TMIYNQHK-GNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp EEEEETTT-TEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred ceeecCCC-Cce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 11000000 000 00001 1359999999765544455555554321 2345566566522
Q ss_pred ---------hHHhhhCCCCcEeCCCCChhHHHHHHHHHhcc
Q 000962 318 ---------RVSQIMGIRSPYLLEYLPEDQCWSIFKKIAFN 349 (1208)
Q Consensus 318 ---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 349 (1208)
.+...+ ...+.+...+.++-.+++...+..
T Consensus 162 ~~~~~~l~~~l~~Rf--~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 162 QEGTYPLPEAQVDRF--MMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CSCCCCCCHHHHTTS--SEEEECCCCCHHHHHHHHHHHHCT
T ss_pred ccCcccCCHHHHhhe--eEEEEcCCCCHHHHHHHHHhcccc
Confidence 122211 225789999999999998887643
No 235
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.88 E-value=0.0064 Score=65.89 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
...+.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999983
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.85 E-value=0.00061 Score=74.36 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=35.2
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEe
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV 236 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 236 (1208)
+...++.+.+++.... ......+.|+|..|+|||+||..+++.... ..-..++++++
T Consensus 133 ~~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3344555556665432 112357889999999999999999983220 22234555654
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.68 E-value=0.0037 Score=74.08 Aligned_cols=162 Identities=16% Similarity=0.165 Sum_probs=78.5
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++|.++....+...+.-.......+..++.++|++|+||||||+.++.. ....|- -|.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~~---~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKFV---RISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEEE---EECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCeE---EEEecccchhhhhhhHHH
Confidence 457888877777655432111001124568999999999999999999973 332222 222222111111111100
Q ss_pred HHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCcc----ChHHHHHhhhCCC---------------CCcEEE
Q 000962 251 EFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDYR----KWEPLQQLLKQGH---------------KGSRVL 311 (1208)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~ii 311 (1208)
..++ .....+...+.. .....-+++||++...... ....+...+.... ....||
T Consensus 156 ~~ig------~~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVG------AMPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhc------cCchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 0011 011111122222 1223448899999654322 1233444442111 234667
Q ss_pred EecCCh-----hHHhhhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 312 VTSRTA-----RVSQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 312 vTtR~~-----~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
.||... .+...+ ..+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 676643 233333 367889999888888777654
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.65 E-value=0.0012 Score=70.67 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=45.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEe--cCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCV--TVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
.+++.|+|++|+||||||.+++.. .-..++|+++ .+..+. . ..+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 457789999999999999999873 1224567777 222110 0 1345555666666666
Q ss_pred CCceEEEEecCC
Q 000962 276 GQRFLLVLDDVW 287 (1208)
Q Consensus 276 ~kr~LlVlDdvw 287 (1208)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 556 99999994
No 239
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.53 E-value=0.0075 Score=73.61 Aligned_cols=179 Identities=14% Similarity=0.095 Sum_probs=97.6
Q ss_pred CccccchhhHHHHHHHHc----CCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLL----SDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..+.|.++.+++|.+++. .++. -+....+-|.++|++|+|||+||+++++ +...+| +.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhHH-----
Confidence 457788888877776542 2211 1123456789999999999999999998 333333 3343321
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-------cC----hHHHHHhhhCC--CCCcEE
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-------RK----WEPLQQLLKQG--HKGSRV 310 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-------~~----~~~l~~~l~~~--~~gs~i 310 (1208)
+ .. .........+...+....+..+.+|++|+++.--. .. ..++...+... ..+--|
T Consensus 274 -l----~s-----k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -I----MS-----KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -H----HS-----SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -h----hc-----ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 10 11122233344444444457789999999943110 11 12222222221 223445
Q ss_pred EEecCChhHH-hhh----CCCCcEeCCCCChhHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHhcCCCh
Q 000962 311 LVTSRTARVS-QIM----GIRSPYLLEYLPEDQCWSIFKKIAFNQGNFSSRMQQQNLEAIGREIVGKCKGLP 377 (1208)
Q Consensus 311 ivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 377 (1208)
|.||...+.. ..+ .....+++...+.++-.++|..+....... ...+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~----~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA----DDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC----TTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC----cccC----HHHHHHhcCCCC
Confidence 5566544321 111 234578898889888888888765332111 1112 345677777664
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.44 E-value=0.0065 Score=75.95 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=73.6
Q ss_pred CccccchhhHHHHHHHHcCCC---CCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDE---FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
..++|.+..++.+...+.... .........+.++|.+|+|||++|+.+++. .. ...+-++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 458899998888877665321 011234567899999999999999999973 32 2233444443221100
Q ss_pred HHHHHcccCCCC-C-CcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEec
Q 000962 248 GMIEFHSKMEQS-T-SSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTS 314 (1208)
Q Consensus 248 ~i~~~~~~~~~~-~-~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (1208)
+.+.++..... . .....+...+++ ....+|+||++.....+....+...+..+. ....||+||
T Consensus 530 -~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 530 -VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp -CSSSCCCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred -HhhhcCCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 00001111000 0 001122233322 346799999997766565666766665321 234577777
Q ss_pred CC
Q 000962 315 RT 316 (1208)
Q Consensus 315 R~ 316 (1208)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.36 E-value=0.009 Score=75.39 Aligned_cols=137 Identities=16% Similarity=0.201 Sum_probs=73.2
Q ss_pred CccccchhhHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILK 247 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 247 (1208)
..++|.+..++.+...+..... +.......+.|+|..|+|||++|+.+++. ....-...+.++++.-.... ...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~-~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-GGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-HHH
Confidence 3579999988888777654211 11233468899999999999999999973 21111123444444322110 000
Q ss_pred HHHHHcccCC-C-CCCcHHHHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCC-----------CCcEEEEec
Q 000962 248 GMIEFHSKME-Q-STSSISLLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGH-----------KGSRVLVTS 314 (1208)
Q Consensus 248 ~i~~~~~~~~-~-~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 314 (1208)
.+ ++... . .......+...++. ...-+|+||++..........+...+..+. .+..||+||
T Consensus 635 ~l---~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 635 RL---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GC-----------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HH---cCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 00 00000 0 00011123333322 234699999997666566667777765431 244577777
Q ss_pred CC
Q 000962 315 RT 316 (1208)
Q Consensus 315 R~ 316 (1208)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.31 E-value=0.052 Score=57.87 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=81.4
Q ss_pred CccccchhhHHHHHHHHcCCC--------CCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000962 171 ANVFGRDDDKERILHMLLSDE--------FDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1208)
..+.|.++.++++.+.+..+- ..-..... +.++|++|+||||||+.++.. ... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh
Confidence 457788888777766442110 00011122 899999999999999999973 221 2344433221110
Q ss_pred HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCCCc-----------cChHHHHHhhhCC--CCCc
Q 000962 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQG--HKGS 308 (1208)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~~--~~gs 308 (1208)
. ..........+.+.. .....++++|++..... .....+...+..+ ....
T Consensus 84 ~----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 Y----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp T----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred h----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0 000111111222221 34578999999953110 0112233333322 2334
Q ss_pred EEEEecCChhHHhhh-----CCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 309 RVLVTSRTARVSQIM-----GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 309 ~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
-++.+|..+++.... ..+..+.+...+.++-.++|+....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 455677766543221 3345778888899988889887653
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.30 E-value=0.012 Score=60.69 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=51.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHccc-----------CC-CCCCcHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK-----------ME-QSTSSISL 265 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~-----------~~-~~~~~~~~ 265 (1208)
-.++.|+|.+|+||||||..++. ..-..++|++....++...+.. +.+..+. .. ....+...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 45899999999999999999986 1224678888776555554433 3322211 11 11122233
Q ss_pred HHHHHHHHhcCCceEEEEecCC
Q 000962 266 LETRLLEFLTGQRFLLVLDDVW 287 (1208)
Q Consensus 266 l~~~l~~~L~~kr~LlVlDdvw 287 (1208)
....++..++.+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4444555544456799999873
No 244
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.29 E-value=0.0086 Score=59.10 Aligned_cols=113 Identities=21% Similarity=0.134 Sum_probs=64.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC---CChHHHHHHHHHHccc------CCC--CC-------
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD---YDLPRILKGMIEFHSK------MEQ--ST------- 260 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~~~~------~~~--~~------- 260 (1208)
..|-|++-.|.||||.|...+- +.-++=..+.++.+.+. .....+ ++.+.. ... ..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHHH
Confidence 3556666677999999988776 33333234555544432 122223 333310 000 00
Q ss_pred CcHHHHHHHHHHHhcCCce-EEEEecCCC---CCccChHHHHHhhhCCCCCcEEEEecCCh
Q 000962 261 SSISLLETRLLEFLTGQRF-LLVLDDVWN---EDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 261 ~~~~~l~~~l~~~L~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1208)
..........++.+.+.+| |||||++-. -.....+.+...+.......-||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1112233445566655555 999999821 12345677888887766777899999985
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.29 E-value=0.022 Score=64.39 Aligned_cols=50 Identities=28% Similarity=0.265 Sum_probs=34.6
Q ss_pred CccccchhhHHHHHHHHc----CCC--------------------CCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 171 ANVFGRDDDKERILHMLL----SDE--------------------FDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~----~~~--------------------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..++|.+..++.+...+. ... .........+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 357898888888876662 000 00011234678999999999999999997
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.19 E-value=0.0043 Score=63.42 Aligned_cols=113 Identities=15% Similarity=0.080 Sum_probs=63.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCC--CCcHHHHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQS--TSSISLLETRLLEFLT 275 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~l~~~l~~~L~ 275 (1208)
-.++.|+|..|+||||++..++. +...+-..++.+...... + ....++..++..... .....++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 57899999999999999998887 333333334444433321 1 112333333322111 2233455555655554
Q ss_pred CCce-EEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChh
Q 000962 276 GQRF-LLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTAR 318 (1208)
Q Consensus 276 ~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 318 (1208)
+.++ +||+|.+-.-+.+..+.+. .+.+ .|-.||+|-+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 4555 9999999433223333333 3332 3678999998643
No 247
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.17 E-value=0.022 Score=60.36 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=77.8
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..++|.+..+.++.+....-.. .-..... +.|+|..|+||||||+.++.. ... ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~--~~~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE--ARV---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH--hCC---CEEEeeHH------
Confidence 4578887766665543321000 0011122 899999999999999999973 222 12333221
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHh-cCCceEEEEecCCCC----------CccCh----HHHHHhhhCCC--C
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFL-TGQRFLLVLDDVWNE----------DYRKW----EPLQQLLKQGH--K 306 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdvw~~----------~~~~~----~~l~~~l~~~~--~ 306 (1208)
.+ .... .......+ ..+.+.. .....++|+|++... ....+ ..+...+..+. .
T Consensus 84 ~~----~~~~-----~~~~~~~i-~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 84 DF----VEMF-----VGVGAARV-RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp HH----HHSC-----TTHHHHHH-HHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred HH----HHHH-----hhHHHHHH-HHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 11 1100 00011112 2222222 235689999999311 00111 22333333222 2
Q ss_pred CcEEEEecCChhHHhh-----hCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 307 GSRVLVTSRTARVSQI-----MGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 307 gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
..-++.||..+++... ......+.+...+.++-.+++...+
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 2344556666544321 1234567888889888888887765
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.10 E-value=0.022 Score=61.29 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=78.8
Q ss_pred CccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..++|.+..++++.+....-.. .-..... +.|+|..|+||||||+.++.. ... ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~--~~~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE--ARV---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH--TTC---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH--cCC---CEEEecHH------
Confidence 4688988776666544321100 0011123 899999999999999999973 222 22333321
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCC----------ccChH----HHHHhhhCCC--CC
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNED----------YRKWE----PLQQLLKQGH--KG 307 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~----------~~~~~----~l~~~l~~~~--~g 307 (1208)
.+ ..... ......+...+...-.....++|+|++.... ...+. .+...+..+. ..
T Consensus 108 ~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 108 DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HH----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 11000 0001111122222222456899999993110 01111 2222232222 22
Q ss_pred cEEEEecCChhHHh-----hhCCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 308 SRVLVTSRTARVSQ-----IMGIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 308 s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
..++.||..+++.. .......+.+...+.++-.+++..++-
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 33445666544322 113445788999999888888887663
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.03 E-value=0.011 Score=73.52 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=85.4
Q ss_pred CccccchhhHHHHHHHHcC----CCC---CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChH
Q 000962 171 ANVFGRDDDKERILHMLLS----DEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLP 243 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 243 (1208)
..++|.+..++++.+++.. +.. -.-.....|.|+|.+|+||||||+.++. .....| +.+....-.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~---i~v~~~~l~--- 275 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPEIM--- 275 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE---EEEEHHHHS---
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE---EEEEchHhh---
Confidence 5689999998888877643 100 0112345789999999999999999987 333332 333321110
Q ss_pred HHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc-----------cChHHHHHhhhCC--CCCcEE
Q 000962 244 RILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY-----------RKWEPLQQLLKQG--HKGSRV 310 (1208)
Q Consensus 244 ~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~~--~~gs~i 310 (1208)
.. ........+...+.........++++|++...-. .....+...+... ..+..|
T Consensus 276 -----------~~-~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 276 -----------SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----------SS-STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred -----------hh-hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 00 0011112222233333345678999999942110 0112333333322 233456
Q ss_pred EEecCChh-HHhhh----CCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 311 LVTSRTAR-VSQIM----GIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 311 ivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
|.||.... +-..+ .....+.+...+.++-.+++...+-
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 66665532 21111 1224567888888888888887653
No 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.03 E-value=0.065 Score=61.99 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=82.2
Q ss_pred CccccchhhHHHHHHHH---cCCCC-C--CCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH
Q 000962 171 ANVFGRDDDKERILHML---LSDEF-D--EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR 244 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L---~~~~~-~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 244 (1208)
..++|.++.+.++.+.. ..... . +-.-.+-+.|+|++|+||||||+.++.. .... .+.++.+.-...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~~---~i~i~g~~~~~~-- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARVP---FITASGSDFVEM-- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCC---EEEEEGGGGTSS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEehhHHHHh--
Confidence 46889988776665543 22110 0 0011223899999999999999999973 2222 233433221100
Q ss_pred HHHHHHHHcccCCCCCCcHHHHHHHHHHHhcC----CceEEEEecCCCCC----------ccCh----HHHHHhhhCC--
Q 000962 245 ILKGMIEFHSKMEQSTSSISLLETRLLEFLTG----QRFLLVLDDVWNED----------YRKW----EPLQQLLKQG-- 304 (1208)
Q Consensus 245 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~----kr~LlVlDdvw~~~----------~~~~----~~l~~~l~~~-- 304 (1208)
........++..++. ...++++|++.... ...+ ..+...+...
T Consensus 104 -----------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 104 -----------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 001112223333322 34799999994311 0111 2233333322
Q ss_pred CCCcEEEEecCChhHHhh-----hCCCCcEeCCCCChhHHHHHHHHHhc
Q 000962 305 HKGSRVLVTSRTARVSQI-----MGIRSPYLLEYLPEDQCWSIFKKIAF 348 (1208)
Q Consensus 305 ~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~ 348 (1208)
..+..|+.||..+++... ......+.+...+.++-.+++..++-
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 234456667776654321 12345788988898888888876653
No 251
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.99 E-value=0.051 Score=60.71 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=32.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..++|.+..++.+........ ..-+.|+|.+|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 358899886666554443322 123889999999999999999973
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.94 E-value=0.017 Score=63.55 Aligned_cols=83 Identities=19% Similarity=0.118 Sum_probs=53.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1208)
.-.++.|+|.+|+||||||.+++.. ....=..++||+....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999873 22222346788877666543 3333332211 1344555555555
Q ss_pred HHhc-CCceEEEEecC
Q 000962 272 EFLT-GQRFLLVLDDV 286 (1208)
Q Consensus 272 ~~L~-~kr~LlVlDdv 286 (1208)
..++ .+.-++|+|.+
T Consensus 133 ~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHHTSCCSEEEEECT
T ss_pred HHhhhcCCCeEEehHh
Confidence 5443 45569999998
No 253
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.77 E-value=0.11 Score=57.67 Aligned_cols=157 Identities=14% Similarity=-0.030 Sum_probs=99.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHH-HhcC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLE-FLTG 276 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~-~L~~ 276 (1208)
.++..++|..|.||++.|..+..... ...|+....+.+....+ ..++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD---------------------WNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC---------------------HHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC---------------------HHHHHHHhcCcCCcc
Confidence 56899999999999999999887321 22343221122222222 2333333221 1346
Q ss_pred CceEEEEecCCC-CCccChHHHHHhhhCCCCCcEEEEecCC-------hhHHhhh-CCCCcEeCCCCChhHHHHHHHHHh
Q 000962 277 QRFLLVLDDVWN-EDYRKWEPLQQLLKQGHKGSRVLVTSRT-------ARVSQIM-GIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 277 kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
++-++|+|++.. .+...++.+...+.....++.+|++|.. ..+...+ .....++..+++.++....+...+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999965 4445678888888766667777766542 2344433 234578999999999988888776
Q ss_pred ccCCCCCccccchhhHHHHHHHHHhcCCChHHHHHH
Q 000962 348 FNQGNFSSRMQQQNLEAIGREIVGKCKGLPLAVKAI 383 (1208)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLai~~~ 383 (1208)
-..+. .-..+.+..+++.++|...++...
T Consensus 156 ~~~g~-------~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNL-------ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTC-------EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCC-------CCCHHHHHHHHHHhchHHHHHHHH
Confidence 44332 112467788999999988877654
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.65 E-value=0.033 Score=59.23 Aligned_cols=80 Identities=8% Similarity=0.116 Sum_probs=52.3
Q ss_pred EEEEEecCCchHHHHHHHHhcccccccc--cceeEEEEecCCCChHHHHHHHHHHcccCCCC-----CCcHHHH-HHHHH
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVREH--FESRMWVCVTVDYDLPRILKGMIEFHSKMEQS-----TSSISLL-ETRLL 271 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l-~~~l~ 271 (1208)
++-|.|.+|+||||||.+++.. .... =..++||+....++.. .+++++..... ..+.+++ ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999998873 3222 2467899888877653 25555543222 3445554 33322
Q ss_pred HH--h-cCCceEEEEecC
Q 000962 272 EF--L-TGQRFLLVLDDV 286 (1208)
Q Consensus 272 ~~--L-~~kr~LlVlDdv 286 (1208)
.. + +++.-+||+|-|
T Consensus 103 ~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHHTCCTTCCEEEEEECS
T ss_pred HHHHhhccCceEEEEecc
Confidence 22 2 356789999998
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.57 E-value=0.031 Score=58.19 Aligned_cols=115 Identities=18% Similarity=0.162 Sum_probs=61.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-------------------
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ------------------- 258 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------------- 258 (1208)
-.+++|+|.+|+|||||++.++.... ..=..++|+.... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 45899999999999999999986321 1112456665433 3444433322 2221100
Q ss_pred ----CCCcHHHHHHHHHHHhc---CCceEEEEecCCCC---CccChHHHHHhhhC--CCCCcEEEEecCCh
Q 000962 259 ----STSSISLLETRLLEFLT---GQRFLLVLDDVWNE---DYRKWEPLQQLLKQ--GHKGSRVLVTSRTA 317 (1208)
Q Consensus 259 ----~~~~~~~l~~~l~~~L~---~kr~LlVlDdvw~~---~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 317 (1208)
...+..++...+.+.+. -++.+||+|..-.. +......+...+.. ...|..||+||...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01144555555554442 22349999998421 22233444444332 13467899988865
No 256
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.53 E-value=0.016 Score=53.63 Aligned_cols=55 Identities=27% Similarity=0.298 Sum_probs=44.8
Q ss_pred cEEecCCCCCc--ccccccccCCcccEEeecCCCccccch-hhccCCcccEEecCCCccc
Q 000962 594 RLLDLSSSTLT--VLPDSVEELKLLRYLDLSRTEIKVLPN-SICNLYNLQTLKLIGCIWI 650 (1208)
Q Consensus 594 r~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~ 650 (1208)
.+++.+++.++ .+|..+. .+|++|+|++|+|+.+|. .|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888999988 8887654 468999999999998876 4788889999999988643
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.43 E-value=0.036 Score=61.44 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=53.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLLE 272 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~~ 272 (1208)
..++.|.|.+|+||||||..++.. ....-..++|++....++.. .++.++.... ...+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 458899999999999999998873 22222468899988766543 1333332211 12345666666655
Q ss_pred Hhc-CCceEEEEecC
Q 000962 273 FLT-GQRFLLVLDDV 286 (1208)
Q Consensus 273 ~L~-~kr~LlVlDdv 286 (1208)
..+ .+--+||+|.+
T Consensus 147 l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHTTTCCSEEEEECT
T ss_pred HHhcCCCCEEEEeCh
Confidence 554 34569999998
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.36 E-value=0.038 Score=61.10 Aligned_cols=83 Identities=17% Similarity=0.070 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1208)
.-.++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3568999999999999999999863 22222457899887766543 2333332211 1234555555554
Q ss_pred HHhc-CCceEEEEecC
Q 000962 272 EFLT-GQRFLLVLDDV 286 (1208)
Q Consensus 272 ~~L~-~kr~LlVlDdv 286 (1208)
...+ .+.-+||+|.+
T Consensus 133 ~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSV 148 (349)
T ss_dssp HHHTTTCCSEEEEECG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 4443 34669999998
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.29 E-value=0.088 Score=51.81 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.++|+|..|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 260
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.23 E-value=0.07 Score=58.99 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=39.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHHc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFH 253 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1208)
....++.|+|.+|+||||||..++....... .-..++|++....++..++. ++++.+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~ 180 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRF 180 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHc
Confidence 3467999999999999999999887422211 22467899988877766554 334443
No 261
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.03 E-value=0.049 Score=57.06 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=51.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHHcccCCC---------CCCcHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ---------STSSIS 264 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~ 264 (1208)
-.++.|+|.+|+||||||+.++....... .-..++|++....+...++. ++++.++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 45999999999999999999986321211 12467888877655544432 33333332110 011222
Q ss_pred H---HHHHHHHHhc-CCceEEEEecCC
Q 000962 265 L---LETRLLEFLT-GQRFLLVLDDVW 287 (1208)
Q Consensus 265 ~---l~~~l~~~L~-~kr~LlVlDdvw 287 (1208)
+ +...+.+.+. .+.-+||+|.+-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 2233444443 466788999883
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.02 E-value=0.18 Score=49.48 Aligned_cols=20 Identities=60% Similarity=0.888 Sum_probs=18.7
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 000962 199 FVIPIIGMPGLGKTTLAQLL 218 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v 218 (1208)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.02 E-value=0.056 Score=58.21 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC-CChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD-YDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLT 275 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~ 275 (1208)
+..+++|+|.+|+||||++..++........ ..+..+..... ....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3569999999999999999999863222111 23455554321 122222333333333222112233444444443 3
Q ss_pred CCceEEEEecC
Q 000962 276 GQRFLLVLDDV 286 (1208)
Q Consensus 276 ~kr~LlVlDdv 286 (1208)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34458888943
No 264
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.97 E-value=0.05 Score=59.78 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=38.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccc----cceeEEEEecCCCChHHHHHHHHHHc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREH----FESRMWVCVTVDYDLPRILKGMIEFH 253 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1208)
..++.|+|.+|+||||||.+++........ -..++|++....++..++. ++++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence 458999999999999999999864221110 2467899888877766554 334444
No 265
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.89 E-value=0.05 Score=60.15 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=51.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLLE 272 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~~ 272 (1208)
..++.|.|.+|+||||||.+++.. ....=..++|++....++... +..++.... ...+.+++.+.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 468999999999999999998873 222223688999877666431 333332211 12234455444443
Q ss_pred Hh-cCCceEEEEecC
Q 000962 273 FL-TGQRFLLVLDDV 286 (1208)
Q Consensus 273 ~L-~~kr~LlVlDdv 286 (1208)
.. +.+--+||+|.+
T Consensus 136 l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 136 LARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHTCCSEEEEECG
T ss_pred HHhccCCCEEEEcCH
Confidence 33 244569999988
No 266
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.77 E-value=0.061 Score=59.09 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhccccccc---------cc-----ceeEEEEecCCCChHHHHHHHHHHcccCC-----
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVRE---------HF-----ESRMWVCVTVDYDLPRILKGMIEFHSKME----- 257 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~~~~~~----- 257 (1208)
.-.++.|+|.+|+||||+|.+++....... .. ..++|++....++..++.. +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 357999999999999999999886322111 11 4678999888777666553 344443211
Q ss_pred ----CCCCcHH---HHHHHHHHHhcC--CceEEEEecC
Q 000962 258 ----QSTSSIS---LLETRLLEFLTG--QRFLLVLDDV 286 (1208)
Q Consensus 258 ----~~~~~~~---~l~~~l~~~L~~--kr~LlVlDdv 286 (1208)
....+.+ ++...+.+.++. +.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0012222 233444444443 4458888877
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.72 E-value=0.03 Score=56.69 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 176 RDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
|++.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566777777776532 23467999999999999999999886
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.53 E-value=0.13 Score=55.55 Aligned_cols=107 Identities=21% Similarity=0.141 Sum_probs=55.3
Q ss_pred hhHHHHHHHHcCCCCC--CCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHH--HHHHHHHHc
Q 000962 178 DDKERILHMLLSDEFD--EEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPR--ILKGMIEFH 253 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~--~~~~i~~~~ 253 (1208)
.-.+++.+.+.....- ......+|.|+|.+|+||||++..++.. .+..-..+.++.. +.+.... -+...++..
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAA-DTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcc-ccccHHHHHHHHHHHHHc
Confidence 3445555665432210 1235689999999999999999999873 3222223445544 3333221 122333333
Q ss_pred ccCC---CCCCcHHH-HHHHHHHHhcCCceEEEEecCC
Q 000962 254 SKME---QSTSSISL-LETRLLEFLTGQRFLLVLDDVW 287 (1208)
Q Consensus 254 ~~~~---~~~~~~~~-l~~~l~~~L~~kr~LlVlDdvw 287 (1208)
+... ....+... ..+.+...+..+.-++|+|-.-
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 2211 11122222 2334555455555588889763
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.49 E-value=0.24 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 270
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.38 E-value=0.38 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 271
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.34 E-value=0.13 Score=55.54 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=32.1
Q ss_pred ccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|-...+..+...+.... ......+|+|.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444455555555554432 245678999999999999999999875
No 272
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.28 E-value=0.11 Score=56.25 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=26.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccc-eeEEEEe
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFE-SRMWVCV 236 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~ 236 (1208)
-.+++|+|.+|+|||||++.++...... -. .++|+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeC
Confidence 4589999999999999999988732222 12 3556654
No 273
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.09 E-value=0.32 Score=54.91 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..||.++|.+|+||||++.+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999998886
No 274
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.07 E-value=0.086 Score=52.26 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHhccCCcccEEecCCCCCc-----ccccccccCCcccEEeecCCCcc-----ccchhhccCCcccEEecCC
Q 000962 584 DKIFHQLKYLRLLDLSSSTLT-----VLPDSVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIG 646 (1208)
Q Consensus 584 ~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~ 646 (1208)
-..+..-+.|+.|+|++|.|. .+-+.+..-+.|++|+|++|.|. .+-+.+..-+.|++|+|++
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 334444455555555555554 22233334445555555555554 2223333344455555543
No 275
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.96 E-value=0.012 Score=58.43 Aligned_cols=108 Identities=11% Similarity=-0.014 Sum_probs=51.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC--CCCcHHHHHHHHHHHhcC
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ--STSSISLLETRLLEFLTG 276 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~l~~~L~~ 276 (1208)
.++.|+|..|+||||++..++.....++ . .++++....+. +.-...+....+.... ...+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecccc--ccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 4788999999999999977765322121 2 23333322110 0000000000000000 0111111 2223334
Q ss_pred CceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh
Q 000962 277 QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 277 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1208)
+.-+|++|.+..-+ .+|......+.+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~-~~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFN-PSLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSC-TTHHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCC-HHHHHHHHHHHHC--CCCEEEEeecc
Confidence 55699999995543 2454444433322 67899988753
No 276
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.95 E-value=0.075 Score=57.98 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=51.0
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccc-cccceeEEEEecCCCChHHHHHHHHHHccc----C
Q 000962 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVR-EHFESRMWVCVTVDYDLPRILKGMIEFHSK----M 256 (1208)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~----~ 256 (1208)
++++.+..-. +-..++|+|..|+|||||++.+.+....+ ..+++ +++-+.+... + ..++.+.+.. .
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~--E-v~~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPE--E-VTEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHH--H-HHHHHTTCSSEEEEE
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChH--H-HHHHHHHhCeEEEEe
Confidence 4555555432 34589999999999999999988721111 22333 3566665432 1 2233333311 0
Q ss_pred CCCCCcHH---------HHHHHHHHHhcCCceEEEEecC
Q 000962 257 EQSTSSIS---------LLETRLLEFLTGQRFLLVLDDV 286 (1208)
Q Consensus 257 ~~~~~~~~---------~l~~~l~~~L~~kr~LlVlDdv 286 (1208)
..+..... ...+.+++ +++.+||++||+
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd--~G~dVLil~Dsl 270 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSI 270 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH--TSCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--cCCCEEEEEeCc
Confidence 00111111 11223333 589999999999
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.92 E-value=0.019 Score=60.54 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=55.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
-.+++|+|+.|+|||||++.+..- ....+...+++.-. ... .+.+.....+.... ...+...+...+...|..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~-~i~--~~~~~~~~~v~q~~-~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIED-PIE--YVFKHKKSIVNQRE-VGEDTKSFADALRAALRED 98 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEES-SCC--SCCCCSSSEEEEEE-BTTTBSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCC-cce--eecCCcceeeeHHH-hCCCHHHHHHHHHHHHhhC
Confidence 569999999999999999998862 22222333333211 100 00000000000000 0001122344566666556
Q ss_pred ceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHH
Q 000962 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVS 320 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 320 (1208)
+=+|++|..- +......+.... ..|.-|++||...++.
T Consensus 99 p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 99 PDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred CCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 7788999984 222222222222 3466788888876543
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.81 E-value=0.047 Score=55.63 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=28.4
Q ss_pred hHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-+++|.+.+... ..+..+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555432 23467999999999999999999986
No 279
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.73 E-value=0.053 Score=62.83 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=35.6
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.++|++..++.+...+.... -|.++|.+|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHH
Confidence 46899999988888776543 5789999999999999999983
No 280
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.62 E-value=0.079 Score=52.51 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=65.5
Q ss_pred hhhHHHHhccCCcccEEecCCC-CCc-----ccccccccCCcccEEeecCCCcc-----ccchhhccCCcccEEecCCCc
Q 000962 580 GRALDKIFHQLKYLRLLDLSSS-TLT-----VLPDSVEELKLLRYLDLSRTEIK-----VLPNSICNLYNLQTLKLIGCI 648 (1208)
Q Consensus 580 ~~~~~~~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~ 648 (1208)
...+...+.+-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|.|. .+-..+..-+.|++|+|++|.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3455667777889999999985 765 34555777789999999999887 345566677889999999887
Q ss_pred cccc----cchhcccccccceeecccc
Q 000962 649 WIME----LPKDLANLVKLRNLELEEM 671 (1208)
Q Consensus 649 ~~~~----lp~~i~~L~~L~~L~l~~n 671 (1208)
+... +-..+..-+.|++|+|++|
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 4322 2233444456888887654
No 281
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.60 E-value=0.11 Score=54.83 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=29.8
Q ss_pred hhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 178 DDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...++++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344455555554431 234567999999999999999999986
No 282
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.56 E-value=0.35 Score=52.63 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=37.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF 252 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1208)
...++.|.|.+|+||||+|..++.....++ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999986432222 567777765 4566676666544
No 283
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.55 E-value=0.22 Score=56.28 Aligned_cols=25 Identities=40% Similarity=0.475 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+..+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999873
No 284
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.46 E-value=0.36 Score=54.78 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=30.3
Q ss_pred hHHHHHHHHcCCCC---CCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 179 DKERILHMLLSDEF---DEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 179 ~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-.+++.+++..... ....+.++|.|+|.+|+||||+|..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556666654321 01235789999999999999999999873
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.46 E-value=0.2 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|+|+.|+||||+++.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.40 E-value=0.034 Score=55.03 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|.|+|+.|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 287
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.37 E-value=0.063 Score=59.33 Aligned_cols=113 Identities=10% Similarity=0.093 Sum_probs=61.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQ 277 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~k 277 (1208)
..+++|+|+.|.||||+.+.+..- +.......+ +.+.+..... .......+. ..............+...|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~~~~v~-q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESKKCLVN-QREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCSSSEEE-EEEBTTTBSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhcccccee-eeeeccccCCHHHHHHHHhhhC
Confidence 359999999999999999998762 222111222 2232221110 000000000 0000111123445778888888
Q ss_pred ceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhHHh
Q 000962 278 RFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARVSQ 321 (1208)
Q Consensus 278 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 321 (1208)
+=+|++|.+-+ .+.++.+.... ..|..||+||...+.+.
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 99999999943 33444444433 24666999988765543
No 288
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.37 E-value=1.3 Score=61.52 Aligned_cols=139 Identities=15% Similarity=0.133 Sum_probs=73.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
+-|.++|++|+|||++|+.+.... ..+ ..+.+.++...+...+++.+...+..........- .-.-.+|+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~------~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL------LPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE------EEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc------cCCCCCce
Confidence 357899999999999997776531 223 23567777776666665555443321110000000 00003678
Q ss_pred eEEEEecCCCCCcc------ChHHHHHhhhCCC-----C-------CcEEEEecCChh------HHhh-hCCCCcEeCCC
Q 000962 279 FLLVLDDVWNEDYR------KWEPLQQLLKQGH-----K-------GSRVLVTSRTAR------VSQI-MGIRSPYLLEY 333 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~------~~~~l~~~l~~~~-----~-------gs~iivTtR~~~------v~~~-~~~~~~~~l~~ 333 (1208)
.++++||+.-...+ ..+.+...+..++ . +..+|.+|-... +-.. ..-...+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 89999997433322 2344555543221 1 123444443221 1111 11124577888
Q ss_pred CChhHHHHHHHHHh
Q 000962 334 LPEDQCWSIFKKIA 347 (1208)
Q Consensus 334 L~~~~~~~lf~~~a 347 (1208)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88887777777655
No 289
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.35 E-value=0.046 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+++|+|+.|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999999986
No 290
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.32 E-value=0.18 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..++.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999873
No 291
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.29 E-value=0.56 Score=57.27 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=80.0
Q ss_pred CCccccchhhHHHHHHHHcCCCC-------CCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCCh
Q 000962 170 TANVFGRDDDKERILHMLLSDEF-------DEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDL 242 (1208)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 242 (1208)
-..+.|.++.++++.+.+.-+-. .+....+-|.++|++|.|||.+|+++++ .....| +.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEec----c
Confidence 34577888888887766543210 0122345578999999999999999998 333322 2222 2
Q ss_pred HHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCceEEEEecCCCCCc--------------cChHHHHHhhhCCC--C
Q 000962 243 PRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQRFLLVLDDVWNEDY--------------RKWEPLQQLLKQGH--K 306 (1208)
Q Consensus 243 ~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdvw~~~~--------------~~~~~l~~~l~~~~--~ 306 (1208)
.++ +... .......+.+.+...-+..+.+|++|+++.--. ....++...+.... .
T Consensus 545 ~~l----~s~~-----vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 PEL----LTMW-----FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HHH----HTTT-----CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred chh----hccc-----cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 222 1111 122233333333333356789999999943100 01233344443222 2
Q ss_pred CcEEEEecCChh-----HHhhhCCCCcEeCCCCChhHHHHHHHHHh
Q 000962 307 GSRVLVTSRTAR-----VSQIMGIRSPYLLEYLPEDQCWSIFKKIA 347 (1208)
Q Consensus 307 gs~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 347 (1208)
+--||.||-.++ +...-..+..+.+...+.++-.++|+.+.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 222333554332 22211345678887777777777777655
No 292
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.28 E-value=0.22 Score=51.44 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=30.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccc---c-ccceeEEEEecCCCC
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVR---E-HFESRMWVCVTVDYD 241 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~ 241 (1208)
.-.+++|+|..|+|||||++.++...... . .-..++|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 35699999999999999999997521111 0 134577877655444
No 293
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.28 E-value=0.21 Score=55.26 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=32.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhccccccccc----ceeEEEEecCCCChH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHF----ESRMWVCVTVDYDLP 243 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~ 243 (1208)
.-.++.|+|..|+|||||++.++......... ..++||+....+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 46799999999999999999998732111111 245888876654433
No 294
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.27 E-value=0.21 Score=54.49 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=36.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFH 253 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~ 253 (1208)
..++.|.|.+|+||||+|..++..... +=..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 458999999999999999999874322 2234566654 456677777665443
No 295
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.21 E-value=0.054 Score=58.03 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+..+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998886
No 296
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.15 E-value=0.076 Score=57.73 Aligned_cols=45 Identities=24% Similarity=0.435 Sum_probs=32.1
Q ss_pred ccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 174 FGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
|+.+.-.+++++.+...- ..+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 444556666766664321 123456789999999999999999987
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.10 E-value=0.042 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|+|+.|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.09 E-value=0.24 Score=55.54 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=36.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhccccccc----ccceeEEEEecCCCChHHHHHHHHHHcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVRE----HFESRMWVCVTVDYDLPRILKGMIEFHS 254 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 254 (1208)
.-.++.|+|.+|+|||||+..++-...... .-..++|++....+....+ +.+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 346999999999999999997653211111 2345788887766655443 33454443
No 299
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.09 E-value=0.11 Score=58.68 Aligned_cols=50 Identities=24% Similarity=0.200 Sum_probs=31.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHH
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGM 249 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 249 (1208)
+.++|+|..|+|||||+..+....... .-+..+++-+.+..+ ..++++++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHh
Confidence 468999999999999999998742221 223445665655432 33444444
No 300
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.02 E-value=0.33 Score=52.12 Aligned_cols=88 Identities=18% Similarity=0.103 Sum_probs=46.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHHcccCC---CCCCcHHHHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEFHSKME---QSTSSISLLETRLLEF 273 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~---~~~~~~~~l~~~l~~~ 273 (1208)
..+++++|.+|+||||++..++.. ....=..+.++....... ....++...+..+... ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999999873 222223455665542222 2222333333332211 1122334443333344
Q ss_pred hc-CCceEEEEecCC
Q 000962 274 LT-GQRFLLVLDDVW 287 (1208)
Q Consensus 274 L~-~kr~LlVlDdvw 287 (1208)
++ ..-=++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 44 333378888763
No 301
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.97 E-value=0.2 Score=56.53 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHHH
Q 000962 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIEF 252 (1208)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~ 252 (1208)
++++.|..-. +-.-++|.|..|+|||+|+..+.+.. .+.+-+.++++-+.+... +.++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4556665432 34578999999999999999998732 123345667777776543 45555666543
No 302
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.96 E-value=0.045 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.108 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 303
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.95 E-value=0.3 Score=53.26 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=28.0
Q ss_pred HHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 181 ERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 181 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-++++.+..-. +-..++|+|.+|+|||+|+..+.+.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH
Confidence 45667776543 3457899999999999999999873
No 304
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.90 E-value=0.05 Score=53.85 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 305
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.88 E-value=0.072 Score=59.73 Aligned_cols=49 Identities=29% Similarity=0.326 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHHcC-------CC--CCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 172 NVFGRDDDKERILHMLLS-------DE--FDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++|.+..++.+...+.. .. .........|.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 468999988888877720 00 00112345688999999999999999997
No 306
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.80 E-value=0.77 Score=48.18 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+++|+|..|.|||||.+.++-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999985
No 307
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.71 E-value=0.16 Score=56.74 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=56.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeE-EEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRM-WVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTG 276 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~ 276 (1208)
..+++|+|..|+||||+++.+..- +.......+ ++. +.... ..+.-...+.... ...+...+...++..|..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e--~~~e~--~~~~~~~~v~Q~~-~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE--DPIEY--VFKHKKSIVNQRE-VGEDTKSFADALRAALRE 208 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEE--SSCCS--CCCCSSSEEEEEE-BTTTBSCSHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEec--ccHhh--hhccCceEEEeee-cCCCHHHHHHHHHHHhhh
Confidence 568999999999999999998862 222112233 322 11110 0000000000000 000112234566677777
Q ss_pred CceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhH
Q 000962 277 QRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV 319 (1208)
Q Consensus 277 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 319 (1208)
.+=+|++|.+-+ . +.+..++.....|..|+.|+-...+
T Consensus 209 ~pd~illdE~~d--~---e~~~~~l~~~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 209 DPDVIFVGEMRD--L---ETVETALRAAETGHLVFGTLHTNTA 246 (372)
T ss_dssp CCSEEEESCCCS--H---HHHHHHHHHHTTTCEEEECCCCCSH
T ss_pred CcCEEEECCCCC--H---HHHHHHHHHHhcCCEEEEEECcchH
Confidence 778999999942 2 2232223222456678888876543
No 308
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.70 E-value=0.7 Score=48.05 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+..|+.... .+...|.++|++|+|||.+|..+++
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344666665431 3345799999999999999999987
No 309
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.65 E-value=0.36 Score=52.51 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..+++|+|..|+||||+++.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 310
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.63 E-value=0.067 Score=54.04 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|+|+.|.||||+|+.++.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 311
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.52 E-value=0.29 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..+|+|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.48 E-value=0.055 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+.|.|+|+.|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 313
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.46 E-value=0.081 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 314
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.45 E-value=0.27 Score=55.72 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHHHH
Q 000962 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGMIE 251 (1208)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~ 251 (1208)
++++.|..-. +-.-++|.|..|+|||+|+..+.+.. .+.+-+.++++-+.+... +.++.+++.+
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 3455554432 34568999999999999999998731 223456778888877664 4555666654
No 315
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.44 E-value=0.064 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.43 E-value=0.072 Score=53.38 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 317
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.39 E-value=0.051 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|+|+|+.|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 318
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.31 E-value=0.29 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999873
No 319
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.28 E-value=0.13 Score=55.28 Aligned_cols=41 Identities=24% Similarity=0.389 Sum_probs=28.6
Q ss_pred hHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..++++..+.... .......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~-~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGK-KAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTC-CCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccc-cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444444332 1234467999999999999999999986
No 320
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.26 E-value=0.71 Score=53.26 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCCC---CCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 180 KERILHMLLSDEFD---EEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 180 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+++.+++...... ...+.++|+|+|.+|+||||++.+++.
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555666443211 124578999999999999999999986
No 321
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.24 E-value=0.071 Score=56.18 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 322
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.22 E-value=0.32 Score=50.84 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=27.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1208)
-.++.|.|.+|+||||||.+++... ...=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 4589999999999999998887632 22223567776543
No 323
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.21 E-value=0.072 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 324
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.08 E-value=0.06 Score=54.50 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 325
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.06 E-value=0.13 Score=55.63 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=29.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecC
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTV 238 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 238 (1208)
..+||+|.|-|||||||.|..++.- ....=..+.-|++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 4789999999999999998877762 222223466677664
No 326
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.99 E-value=0.48 Score=53.97 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=29.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD 241 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 241 (1208)
....+++|+|..|+|||||++.++.- .+. -...+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 34679999999999999999999873 222 23445554444444
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.99 E-value=0.1 Score=53.00 Aligned_cols=24 Identities=46% Similarity=0.616 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 328
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.96 E-value=0.089 Score=53.23 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 329
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.94 E-value=0.16 Score=46.90 Aligned_cols=54 Identities=28% Similarity=0.393 Sum_probs=43.7
Q ss_pred cEEeecCCCcc--ccchhhccCCcccEEecCCCccccccch-hcccccccceeecccccc
Q 000962 617 RYLDLSRTEIK--VLPNSICNLYNLQTLKLIGCIWIMELPK-DLANLVKLRNLELEEMFW 673 (1208)
Q Consensus 617 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~ 673 (1208)
..++.+++.++ .+|..+. .+|++|+|++|. +..+|. .|..+++|++|+|.+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 47888999998 8887543 479999999998 556665 467899999999999865
No 330
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.94 E-value=0.2 Score=50.12 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|+|=|.-|+||||.++.+++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377889999999999999987
No 331
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.92 E-value=0.67 Score=47.93 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=17.2
Q ss_pred EEEEEEecCCchHHHHHHHHh
Q 000962 199 FVIPIIGMPGLGKTTLAQLLF 219 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~ 219 (1208)
+.+.|+|..|.||||+...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 378999999999998765554
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.88 E-value=0.09 Score=53.61 Aligned_cols=24 Identities=54% Similarity=0.599 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..+|+|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.87 E-value=0.086 Score=52.35 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 334
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.84 E-value=0.13 Score=53.18 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 177 DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
++..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~~------~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNKH------GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHT------TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC------CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444555544332 3688999999999999999999874
No 335
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.84 E-value=0.084 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999975
No 336
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.82 E-value=0.08 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 56899999999999999999987
No 337
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.82 E-value=0.085 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46999999999999999997553
No 338
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.81 E-value=0.065 Score=53.02 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++|.|+|+.|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 339
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.78 E-value=0.077 Score=53.07 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.76 E-value=0.075 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 341
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.75 E-value=0.11 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..++++|+|..|+|||||+.++..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 342
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.75 E-value=0.082 Score=55.59 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|.|+|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 343
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.72 E-value=0.1 Score=52.81 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+|+|.|+.|+||||+|+.+++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.66 E-value=0.088 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|.|+.|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 345
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.64 E-value=0.072 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|+|+.|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 346
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.62 E-value=0.087 Score=53.39 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 347
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.57 E-value=0.11 Score=51.82 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
...+|.|+|+.|+||||+|+.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999873
No 348
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.55 E-value=0.093 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.52 E-value=0.089 Score=53.29 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999975
No 350
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.48 E-value=0.066 Score=52.86 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|.|+|+.|+|||||++++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 351
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.46 E-value=0.087 Score=53.37 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 352
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.40 E-value=0.077 Score=52.23 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|.|+|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 353
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.40 E-value=0.54 Score=55.11 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=36.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF 252 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1208)
...++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 34688999999999999999998743222 113567776643 466776666544
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.37 E-value=0.1 Score=55.24 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 355
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.28 E-value=0.097 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 356
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.24 E-value=0.14 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.23 E-value=0.11 Score=52.84 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 358
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.14 E-value=0.14 Score=52.61 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=30.2
Q ss_pred cchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 175 GRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+.++..+++...+... ...+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3345555555555432 3789999999999999999998873
No 359
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.14 E-value=0.079 Score=52.77 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 360
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.09 E-value=0.11 Score=51.54 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|.|+.|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.06 E-value=0.076 Score=52.78 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 362
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.03 E-value=0.14 Score=51.99 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+.+||.|.|++|+||||.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 363
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.02 E-value=0.12 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.528 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+.++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999986
No 364
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.00 E-value=0.12 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|+|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.97 E-value=0.12 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 366
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.95 E-value=0.28 Score=56.83 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 177 DDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 177 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.+.++.+...+.... +.+.|.|.+|+||||++..+...
T Consensus 31 ~~av~~~~~~i~~~~-------~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-------HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHSSS-------CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-------CEEEEEeCCCCCHHHHHHHHHHH
Confidence 344555555665432 38899999999999999988873
No 367
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.89 E-value=0.11 Score=53.79 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999976
No 368
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.84 E-value=0.13 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3467999999999999999999986
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.83 E-value=0.11 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.557 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 370
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.76 E-value=0.089 Score=51.58 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 371
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.74 E-value=0.12 Score=55.71 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..+++|+|.+|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999986
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.71 E-value=0.12 Score=50.46 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 373
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.71 E-value=0.11 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|+|+.|+|||||++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 374
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.67 E-value=0.095 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 375
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.66 E-value=0.48 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
...|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 376
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.64 E-value=0.24 Score=55.48 Aligned_cols=87 Identities=14% Similarity=0.271 Sum_probs=50.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccc----eeEEEEecCCC-ChHHHHHHHHHHcccC-------CCCCCcHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFE----SRMWVCVTVDY-DLPRILKGMIEFHSKM-------EQSTSSISL 265 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~~-~~~~~~~~i~~~~~~~-------~~~~~~~~~ 265 (1208)
-.-++|.|..|+|||+|+.++++.... +-+ .++++-+.+.. .+.++.+++.+.-... ..+......
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 345789999999999999999884333 223 55666666554 3455555554321000 001111111
Q ss_pred -----HHHHHHHHh---cCCceEEEEecC
Q 000962 266 -----LETRLLEFL---TGQRFLLVLDDV 286 (1208)
Q Consensus 266 -----l~~~l~~~L---~~kr~LlVlDdv 286 (1208)
..-.+.+++ +++.+|+++||+
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 112234444 378999999999
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.64 E-value=0.13 Score=51.22 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.55 E-value=0.17 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 379
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.51 E-value=0.084 Score=52.35 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=16.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.49 E-value=0.15 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|..|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999876
No 381
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.46 E-value=0.16 Score=48.70 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999987
No 382
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.44 E-value=0.18 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.33 E-value=0.25 Score=49.57 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.32 E-value=0.13 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...|.|.|+.|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 385
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.32 E-value=0.26 Score=55.13 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=49.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccc--------cccc-eeEEEEecCCCC-hHHHHHHHHHHcccC-------CCCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVR--------EHFE-SRMWVCVTVDYD-LPRILKGMIEFHSKM-------EQST 260 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~~-------~~~~ 260 (1208)
-.-++|.|..|+|||+|+..+++..... .+=+ .++++-+.+..+ +.++.+++.+.-... ..+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3467899999999999999998854331 1111 456666665543 445555544321000 0011
Q ss_pred CcHHH-----HHHHHHHHh---cCCceEEEEecC
Q 000962 261 SSISL-----LETRLLEFL---TGQRFLLVLDDV 286 (1208)
Q Consensus 261 ~~~~~-----l~~~l~~~L---~~kr~LlVlDdv 286 (1208)
..... ..-.+.+++ +++.+|+++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11111 112234444 378999999999
No 386
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.24 E-value=0.25 Score=53.70 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=30.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD 241 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 241 (1208)
...++|+|+|-||+||||+|..++.. ....=..++-|++....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCCC
Confidence 45789999999999999999988873 222223466777765443
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.23 E-value=0.16 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 388
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.22 E-value=0.13 Score=51.43 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 389
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.20 E-value=0.18 Score=49.87 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=27.8
Q ss_pred hHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 179 DKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 179 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-+..+..++..- .+...+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 355666666531 22346899999999999999999873
No 390
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.17 E-value=0.14 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 391
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.17 E-value=0.17 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999973
No 392
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.14 E-value=0.14 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 393
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.07 E-value=0.31 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.06 E-value=0.14 Score=53.69 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 395
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.04 E-value=0.43 Score=63.77 Aligned_cols=83 Identities=14% Similarity=0.056 Sum_probs=53.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1208)
..++|.|+|++|+|||+||.++.... ..+=..++|+++...++... ++.++.... ..+..++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 35689999999999999999998732 22223578888887766554 333331111 1223345555555
Q ss_pred HHh-cCCceEEEEecC
Q 000962 272 EFL-TGQRFLLVLDDV 286 (1208)
Q Consensus 272 ~~L-~~kr~LlVlDdv 286 (1208)
+.. +.+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 443 356779999999
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.02 E-value=0.14 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...|.|.|+.|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 397
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.86 E-value=0.13 Score=52.69 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 398
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.84 E-value=0.67 Score=52.95 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=40.3
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCC-hHHHHHHH
Q 000962 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYD-LPRILKGM 249 (1208)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 249 (1208)
++++.|..-. +-..++|.|..|+|||+|+.++++. .+-+.++++-+.+..+ +.++++++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4556665432 3457899999999999999999763 2235677888887765 34444443
No 399
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.83 E-value=0.82 Score=52.68 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=34.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMI 250 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 250 (1208)
..++.|.|.+|+||||+|..++....... =..++|++.. .+..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHH
Confidence 45899999999999999999987432221 1256777654 34456655554
No 400
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.76 E-value=0.55 Score=53.35 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+|.|+|++|+||||+|+.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 401
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.73 E-value=0.29 Score=55.36 Aligned_cols=50 Identities=28% Similarity=0.394 Sum_probs=35.3
Q ss_pred CccccchhhHHHHHHHHcCC--------CCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 171 ANVFGRDDDKERILHMLLSD--------EFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..++|.+..++.+...+... ........+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45789888888887665321 000111234588999999999999999997
No 402
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.68 E-value=0.18 Score=54.38 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+++|+|..|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 403
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.58 E-value=0.49 Score=51.70 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=54.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCCCcHHHHHHHHHHHhcCCc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQSTSSISLLETRLLEFLTGQR 278 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~L~~kr 278 (1208)
.+++|+|..|.|||||++.+..- +. .-...+.+.-......... + +.+..... .-......+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~~-~---~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKHH-K---NYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSSC-S---SEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeeccccccc-h---hEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 48999999999999999999873 22 1234444432221111000 0 00000000 11123345566677778
Q ss_pred eEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCChhH
Q 000962 279 FLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTARV 319 (1208)
Q Consensus 279 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 319 (1208)
=+|++|.+-. .+.++.+ ..+..++ .-+|+||....+
T Consensus 242 ~ilildE~~~--~e~~~~l-~~~~~g~--~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDFY-NVLCSGH--KGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCS--THHHHHH-HHHHTTC--CCEEEEEECSSH
T ss_pred CEEEEcCCCh--HHHHHHH-HHHhcCC--CEEEEEEcccHH
Confidence 8999999944 2333333 3333221 126666665443
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.56 E-value=0.19 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 405
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.54 E-value=0.13 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 406
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.52 E-value=0.1 Score=53.34 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.51 E-value=0.19 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 408
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.48 E-value=0.27 Score=49.03 Aligned_cols=26 Identities=35% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34557899999999999999999874
No 409
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.47 E-value=0.17 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 410
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.46 E-value=0.43 Score=52.99 Aligned_cols=37 Identities=35% Similarity=0.540 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 180 KERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 180 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..++...+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555554322 3578999999999999999999876
No 411
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.46 E-value=0.17 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.44 E-value=0.2 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999987
No 413
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.40 E-value=0.15 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...|.|.|+.|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 414
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.36 E-value=0.15 Score=50.65 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998873
No 415
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.30 E-value=0.3 Score=49.91 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=18.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
...|.|-|+.|+||||+++.+++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 416
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.25 E-value=0.57 Score=53.11 Aligned_cols=96 Identities=20% Similarity=0.281 Sum_probs=52.7
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHH-HHHhcccccccccce-eEEEEecCCCC-hHHHHHHHHHHcccCCC
Q 000962 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLA-QLLFNEERVREHFES-RMWVCVTVDYD-LPRILKGMIEFHSKMEQ 258 (1208)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~~~~~~~ 258 (1208)
++++.|..-. +-..++|.|..|+|||+|| ..+.+.. .-+. ++++-+.+..+ +.++.+++.+.-.....
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 3455554432 3456899999999999996 4776632 2343 46677766543 44455555432111100
Q ss_pred -----CCCc--HHHH-----HHHHHHHh--cCCceEEEEecC
Q 000962 259 -----STSS--ISLL-----ETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 259 -----~~~~--~~~l-----~~~l~~~L--~~kr~LlVlDdv 286 (1208)
..++ .... .-.+.+++ +++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 0111 1111 11233333 589999999999
No 417
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.20 E-value=1.1 Score=51.43 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=36.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF 252 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1208)
...++.|.|.+|+||||+|..++....... =..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 345899999999999999999987432211 1356776654 4566676666543
No 418
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.18 E-value=0.82 Score=52.51 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=39.3
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC-ChHHHHHH
Q 000962 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY-DLPRILKG 248 (1208)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~ 248 (1208)
++++.|..-. +-..++|.|..|+|||+|+.++++.. +-+.++++-+.+.. .+.+++++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 4566665432 35578999999999999999998732 23567788777663 23344443
No 419
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.13 E-value=0.24 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.236 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+++|+|..|.|||||++.++-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999885
No 420
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.11 E-value=0.18 Score=51.50 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 421
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.08 E-value=0.19 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 422
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.02 E-value=0.8 Score=51.79 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=53.0
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHH-HHHhcccccccccc-eeEEEEecCCCC-hHHHHHHHHHHcccCCC
Q 000962 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLA-QLLFNEERVREHFE-SRMWVCVTVDYD-LPRILKGMIEFHSKMEQ 258 (1208)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~ 258 (1208)
+.++.|..-. +-..++|.|..|+|||+|| ..+.+. + +-+ .++++-+.+..+ +.++.+++.+.-.....
T Consensus 151 kaID~l~Pig-----rGQR~~Ifg~~g~GKT~l~l~~I~n~---~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPIG-----RGQRELIIGDRQTGKTALAIDAIINQ---R-DSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESSSSSHHHHHHHHHHTT---S-SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeeccccccc-----cCCEEEeecCCCCCcchHHHHHHHhh---c-cCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 3455554432 3446799999999999996 566652 2 223 356777776643 44555554432111100
Q ss_pred -----CCCc--H---------HHHHHHHHHHhcCCceEEEEecC
Q 000962 259 -----STSS--I---------SLLETRLLEFLTGQRFLLVLDDV 286 (1208)
Q Consensus 259 -----~~~~--~---------~~l~~~l~~~L~~kr~LlVlDdv 286 (1208)
..++ . -.+.+.+++ +++.+||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 0111 1 122333443 589999999999
No 423
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.93 E-value=0.35 Score=54.53 Aligned_cols=100 Identities=12% Similarity=0.183 Sum_probs=55.6
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcccccccc--cceeEEEEecCCCC-hHHHHHHHHHHcccCCC
Q 000962 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNEERVREH--FESRMWVCVTVDYD-LPRILKGMIEFHSKMEQ 258 (1208)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~ 258 (1208)
++++.|..-. +-.-++|.|..|+|||+|+..++++....+. =+.++++-+.+..+ +.++.+++.+.-.....
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 3455554432 3446788999999999999999985443211 13566776765543 45555555543111100
Q ss_pred -----CCCc--HH-----HHHHHHHHHh---cCCceEEEEecC
Q 000962 259 -----STSS--IS-----LLETRLLEFL---TGQRFLLVLDDV 286 (1208)
Q Consensus 259 -----~~~~--~~-----~l~~~l~~~L---~~kr~LlVlDdv 286 (1208)
..++ .. ...-.+.+++ +++.+|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0111 11 1112233333 479999999998
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.90 E-value=0.15 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 425
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.90 E-value=0.22 Score=59.82 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 171 ANVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..++|.+..++.+...+... ..+.|+|..|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 46889998888887777654 3789999999999999999987
No 426
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.89 E-value=0.19 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 427
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.85 E-value=2.9 Score=58.72 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=47.9
Q ss_pred EEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCCCC-CcHHHHHHHHHHHh-cCC
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQST-SSISLLETRLLEFL-TGQ 277 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~l~~~L-~~k 277 (1208)
-|-++|+.|+|||++++.+.. +..+ + ..+.+.++...+...++..+-.......... .. +..-. .+|
T Consensus 1306 pvLL~GptGtGKT~li~~~L~--~l~~-~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~-------~~~p~~~Gk 1374 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLR--AFPD-F-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET-------VLRPTQLGK 1374 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGG--GCTT-E-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCE-------EEEESSTTC
T ss_pred cEEEECCCCCCHHHHHHHHHH--hCCC-C-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCc-------ccCCCcCCc
Confidence 467999999999998877765 2222 2 2467788888777777666643332111000 00 00000 278
Q ss_pred ceEEEEecCCCCC
Q 000962 278 RFLLVLDDVWNED 290 (1208)
Q Consensus 278 r~LlVlDdvw~~~ 290 (1208)
+.++++||+.-..
T Consensus 1375 ~~VlFiDDiNmp~ 1387 (3245)
T 3vkg_A 1375 WLVVFCDEINLPS 1387 (3245)
T ss_dssp EEEEEETTTTCCC
T ss_pred eEEEEecccCCCC
Confidence 8999999995444
No 428
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.84 E-value=0.17 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..|.|.|+.|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.72 E-value=0.32 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|+.|.|||||.+.+.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999985
No 430
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.63 E-value=0.62 Score=52.86 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=47.8
Q ss_pred cEEEEEEecCCchHHHHH-HHHhcccccccccce-eEEEEecCCCC-hHHHHHHHHHHcccCC-----CCCCc--HHH--
Q 000962 198 AFVIPIIGMPGLGKTTLA-QLLFNEERVREHFES-RMWVCVTVDYD-LPRILKGMIEFHSKME-----QSTSS--ISL-- 265 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~~~~i~~~~~~~~-----~~~~~--~~~-- 265 (1208)
-..++|.|..|+|||+|| ..+.+. . .-+. ++++-+.+..+ +.++.+++.+.-.... ...++ ...
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 456899999999999996 467763 2 2443 46677766543 4455555543211000 00111 111
Q ss_pred ---HHHHHHHHh--cCCceEEEEecC
Q 000962 266 ---LETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 266 ---l~~~l~~~L--~~kr~LlVlDdv 286 (1208)
..-.+.+++ +++.+||++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 111233333 589999999999
No 431
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.54 E-value=0.22 Score=51.08 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999985
No 432
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.53 E-value=0.24 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999986
No 433
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.52 E-value=0.22 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999987
No 434
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.51 E-value=0.21 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+++|+|..|.|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 435
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.47 E-value=0.24 Score=54.52 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999999987
No 436
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.47 E-value=0.21 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.40 E-value=0.22 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 438
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.34 E-value=0.29 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
....++.+.|.||+||||++..++..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999863
No 439
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.31 E-value=1.8 Score=49.40 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=35.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEF 252 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 252 (1208)
+..++.|.|.+|+||||+|..++.+...+ =..++|++.. .+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 34589999999999999999998743222 1356666554 4455566555543
No 440
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.30 E-value=0.34 Score=51.29 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|+.|.|||||++.+.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 441
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.27 E-value=0.95 Score=47.21 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=31.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHH
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGM 249 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 249 (1208)
-.++.|.|.+|+||||+|.+++.+. ....-..+++++.. .+..++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS--SCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc--CCHHHHHHHH
Confidence 4589999999999999999876531 22222345565544 3455555444
No 442
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.21 E-value=0.23 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 45999999999999999998884
No 443
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.11 E-value=0.17 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=16.4
Q ss_pred cEEEEEEecCCchHHHHHHHHh
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLF 219 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~ 219 (1208)
..+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999998
No 444
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.09 E-value=0.37 Score=50.74 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.08 E-value=0.25 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 446
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.04 E-value=0.73 Score=61.67 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=55.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1208)
...++.|+|.+|+||||||.+++... ...=..++|++.....+... ++.++.... ...+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 35699999999999999999998743 22224678888877766432 444443211 1345566666665
Q ss_pred HHh-cCCceEEEEecCC
Q 000962 272 EFL-TGQRFLLVLDDVW 287 (1208)
Q Consensus 272 ~~L-~~kr~LlVlDdvw 287 (1208)
... +.+.-+||+|-+-
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 443 3456699999883
No 447
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.03 E-value=0.25 Score=50.38 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 448
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.03 E-value=0.38 Score=49.47 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
...+|+|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999873
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.02 E-value=0.3 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.245 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999986
No 450
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.96 E-value=0.44 Score=50.54 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=28.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCC
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVD 239 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 239 (1208)
++|+|.|-||+||||+|..++.. ....=..+.-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCC
Confidence 57888999999999999988873 2222234667776544
No 451
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.92 E-value=0.7 Score=46.44 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=23.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcccccccccc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNEERVREHFE 229 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 229 (1208)
+-|+|-|.-|+||||+++.+++ .....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence 4688999999999999999987 3444444
No 452
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.82 E-value=0.25 Score=50.77 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 453
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.80 E-value=0.67 Score=61.15 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=55.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC-----CCCcHHHHHHHHH
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ-----STSSISLLETRLL 271 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l~ 271 (1208)
.-+++.|+|.+|+||||||.+++... ...=..++|++.....+... ++.++.... ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 35699999999999999999998742 22234688998887776531 344433211 1344566666555
Q ss_pred HHh-cCCceEEEEecCC
Q 000962 272 EFL-TGQRFLLVLDDVW 287 (1208)
Q Consensus 272 ~~L-~~kr~LlVlDdvw 287 (1208)
... +.+.-+||+|-+-
T Consensus 455 ~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHhcCCCEEEECCHH
Confidence 444 3456699999984
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.63 E-value=0.27 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4466899999999999999999986
No 455
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.60 E-value=0.56 Score=55.59 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+++.|.|.+|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4888999999999999999886
No 456
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.58 E-value=0.7 Score=46.94 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
....|.|.|..|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999873
No 457
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.57 E-value=0.89 Score=46.71 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
...|.|.|+.|+||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 458
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.51 E-value=0.41 Score=49.86 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.46 E-value=0.28 Score=49.42 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+|.|.|++|+||+|+|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 460
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.44 E-value=0.28 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...|.|.|+.|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999987
No 461
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=87.44 E-value=2.2 Score=44.05 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=52.4
Q ss_pred EEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHccc---C-C-------CC-----CCcHH
Q 000962 201 IPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSK---M-E-------QS-----TSSIS 264 (1208)
Q Consensus 201 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~---~-~-------~~-----~~~~~ 264 (1208)
+.|+|..|.|||.+|..+... . . ..++++ +.. ..+..+..+.+.. . . .. ....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv-~P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L--S-TPTLIV-VPT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S--C-SCEEEE-ESS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEE-eCC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 678999999999999888763 2 1 223333 222 2233333332221 1 0 00 11223
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEec
Q 000962 265 LLETRLLEFLTGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTS 314 (1208)
Q Consensus 265 ~l~~~l~~~L~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt 314 (1208)
.+..... .+.++--+||+|++.......+..+...++ ...++.+|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333332 334455699999997655456666655543 334455553
No 462
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.41 E-value=0.54 Score=53.38 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=47.3
Q ss_pred cEEEEEEecCCchHHHHH-HHHhcccccccccc-eeEEEEecCCCC-hHHHHHHHHHHccc--------CCCC----CC-
Q 000962 198 AFVIPIIGMPGLGKTTLA-QLLFNEERVREHFE-SRMWVCVTVDYD-LPRILKGMIEFHSK--------MEQS----TS- 261 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~--------~~~~----~~- 261 (1208)
-..++|.|..|+|||+|| ..+.+.. . -+ .++++-+.+..+ +.++.+++.+.-.. ..+. ..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 456799999999999996 4777632 2 34 346677766543 33444444321100 0001 00
Q ss_pred ---cHHHHHHHHHHHhcCCceEEEEecC
Q 000962 262 ---SISLLETRLLEFLTGQRFLLVLDDV 286 (1208)
Q Consensus 262 ---~~~~l~~~l~~~L~~kr~LlVlDdv 286 (1208)
..-.+.+.++. +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 11123344444 589999999999
No 463
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.39 E-value=0.43 Score=48.17 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=55.6
Q ss_pred EEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCC-----CCCC--cHHHHHHHHHH
Q 000962 200 VIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKME-----QSTS--SISLLETRLLE 272 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~--~~~~l~~~l~~ 272 (1208)
.|.+.|.||+||||+|..++... .+..++ +.++.+...-+... ...++.+.... .... ....+...+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L-- 81 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-LRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDALL-- 81 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-HHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHHH--
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHHH--
Confidence 47889999999999998888732 222333 44555544333221 12222222110 0000 001122222
Q ss_pred HhcCCceEEEEecCCCC------CccChHHHHHhhhCCCCCcEEEEecCCh
Q 000962 273 FLTGQRFLLVLDDVWNE------DYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 273 ~L~~kr~LlVlDdvw~~------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1208)
+.+.=++|+|+.-.. ....|..+...++ .|-.|++|+..+
T Consensus 82 --~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 82 --KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp --HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred --hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 234569999987422 1135777766555 355688887744
No 464
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.37 E-value=0.34 Score=55.01 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=29.2
Q ss_pred hHHHHHHHHcCCC--C-CCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 179 DKERILHMLLSDE--F-DEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 179 ~~~~l~~~L~~~~--~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..+++.+++.... . .......+|+|+|.+|+||||+|..++..
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455556654331 0 01134579999999999999999999873
No 465
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.36 E-value=2.5 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999876
No 466
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.33 E-value=0.33 Score=48.37 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999874
No 467
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.23 E-value=0.24 Score=50.18 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+++|+|..|.|||||.+.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.22 E-value=0.32 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 000962 196 DDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 196 ~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+..+|+|.|..|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999986
No 469
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.21 E-value=0.16 Score=54.39 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=18.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 470
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.20 E-value=0.28 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 471
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.19 E-value=0.33 Score=50.45 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999886
No 472
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.16 E-value=0.3 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 45899999999999999999986
No 473
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.14 E-value=1.2 Score=50.10 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.1
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhc
Q 000962 195 EDDAFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 195 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35688999999999999999998875
No 474
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.09 E-value=2.6 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.++.|+|..|.||||++..+.-
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999996655543
No 475
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.06 E-value=0.64 Score=52.86 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=53.4
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHH-HHHhccccc----ccccc-eeEEEEecCCCC-hHHHHHHHHHHcc
Q 000962 182 RILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLA-QLLFNEERV----REHFE-SRMWVCVTVDYD-LPRILKGMIEFHS 254 (1208)
Q Consensus 182 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~ 254 (1208)
++++.|..-. +-..++|.|..|+|||+|| ..+.+.... ..+-+ .++++-+.+..+ +.++.+++.+.-.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 4455555432 3456899999999999995 466663211 01234 356777776543 4455555543211
Q ss_pred cCC-----CCCCc--HHHH-----HHHHHHHh--cCCceEEEEecC
Q 000962 255 KME-----QSTSS--ISLL-----ETRLLEFL--TGQRFLLVLDDV 286 (1208)
Q Consensus 255 ~~~-----~~~~~--~~~l-----~~~l~~~L--~~kr~LlVlDdv 286 (1208)
... ...++ .... .-.+.+++ +++.+||++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 000 00111 1111 11233333 589999999999
No 476
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=87.05 E-value=1.3 Score=49.25 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=30.5
Q ss_pred ccccchhhHHHHHHHHcCCCCCCCCCcEEEEEEecCCchHHHHHHHHhcc
Q 000962 172 NVFGRDDDKERILHMLLSDEFDEEDDAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
.++|....+.++...+..-. .... .|.|+|..|+||+++|+.++..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a---~~~~-~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA---KSKA-PVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH---TSCS-CEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhh---ccch-hheEEeCCCchHHHHHHHHHHh
Confidence 46777666666555443211 1112 3669999999999999999873
No 477
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.05 E-value=1 Score=45.49 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..|.|-|..|+||||+++.++..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 478
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.03 E-value=0.29 Score=51.61 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 479
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.01 E-value=0.29 Score=51.37 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 480
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.93 E-value=0.52 Score=50.62 Aligned_cols=41 Identities=27% Similarity=0.203 Sum_probs=28.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCC
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDY 240 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 240 (1208)
.++|+|.|-||+||||+|..++.. ....=..+.-|+.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCCC
Confidence 368888999999999999988873 22222245667765443
No 481
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.92 E-value=0.36 Score=46.64 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999863
No 482
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.83 E-value=0.31 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.75 E-value=0.35 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-+.|.|.|..|+||||||.++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 484
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.70 E-value=0.33 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 485
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.66 E-value=0.3 Score=48.32 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 000962 200 VIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 200 vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 486
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.65 E-value=0.32 Score=52.66 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 487
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.59 E-value=0.32 Score=51.33 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 488
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.47 E-value=0.33 Score=50.57 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999986
No 489
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.38 E-value=0.34 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 490
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.27 E-value=0.35 Score=51.17 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||++.++-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 491
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.04 E-value=0.35 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999986
No 492
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.03 E-value=0.35 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999986
No 493
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.99 E-value=0.37 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|..|.|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999876
No 494
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.96 E-value=0.65 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
-.+++|+|..|+|||||++.++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 459999999999999999999863
No 495
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.93 E-value=0.36 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999986
No 496
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=85.86 E-value=0.49 Score=46.83 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcccccccccceeEEEEecCCCChHHHHHHHHHHcccCCC--CCCcHHHHHHHHHHHh
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNEERVREHFESRMWVCVTVDYDLPRILKGMIEFHSKMEQ--STSSISLLETRLLEFL 274 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~l~~~L 274 (1208)
..++..++|..|.||||.+..+++....+ .... +.+..... .+.-...+...++.... ...+.. .+.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV-~v~k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIA-KQKI-QVFKPEID--NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCE-EEEEEC---------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEE-EEEEeccC--ccchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 35799999999999999998888743222 2232 22221111 01000111222211100 011112 233344
Q ss_pred cCCceEEEEecCCCCCccChHHHHHhhhCCCCCcEEEEecCCh
Q 000962 275 TGQRFLLVLDDVWNEDYRKWEPLQQLLKQGHKGSRVLVTSRTA 317 (1208)
Q Consensus 275 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 317 (1208)
.++-=+|++|.+---+.+..+.+....+ .|..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 4433499999874332233444443333 267899998864
No 497
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.77 E-value=0.55 Score=46.46 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcc
Q 000962 197 DAFVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 197 ~~~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999873
No 498
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.57 E-value=0.44 Score=45.59 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcc
Q 000962 199 FVIPIIGMPGLGKTTLAQLLFNE 221 (1208)
Q Consensus 199 ~vi~I~G~gGiGKTtLa~~v~~~ 221 (1208)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 499
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.57 E-value=0.4 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
-.++.|+|.+|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999886
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.53 E-value=0.46 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 000962 198 AFVIPIIGMPGLGKTTLAQLLFN 220 (1208)
Q Consensus 198 ~~vi~I~G~gGiGKTtLa~~v~~ 220 (1208)
...|+|.|..|+||||+++.++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
Done!