Query 000963
Match_columns 1208
No_of_seqs 462 out of 1583
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 4E-48 1.4E-52 385.5 7.4 138 975-1117 4-142 (143)
2 2p0n_A Hypothetical protein NM 99.5 5.2E-13 1.8E-17 137.6 16.3 145 291-443 15-168 (172)
3 2p0n_A Hypothetical protein NM 99.4 1.4E-12 4.6E-17 134.5 15.7 149 41-194 15-168 (172)
4 2k2d_A Ring finger and CHY zin 99.3 6.9E-13 2.4E-17 121.1 0.9 50 1157-1206 1-50 (79)
5 3cax_A Uncharacterized protein 99.2 6.9E-11 2.4E-15 135.8 16.1 149 291-443 8-166 (369)
6 2ecm_A Ring finger and CHY zin 99.1 8.3E-11 2.9E-15 98.5 4.5 52 1114-1165 3-54 (55)
7 3cax_A Uncharacterized protein 99.0 4.5E-09 1.5E-13 120.7 16.2 150 41-192 8-164 (369)
8 2ep4_A Ring finger protein 24; 99.0 2.8E-10 9.6E-15 101.2 4.3 58 1110-1168 9-66 (74)
9 1iym_A EL5; ring-H2 finger, ub 99.0 3.1E-10 1.1E-14 95.1 4.0 50 1115-1165 4-54 (55)
10 2ecl_A Ring-box protein 2; RNF 98.9 3.3E-10 1.1E-14 103.3 4.2 50 1116-1165 26-75 (81)
11 1x4j_A Ring finger protein 38; 98.9 2.3E-10 7.7E-15 102.3 3.0 52 1114-1166 21-72 (75)
12 2kiz_A E3 ubiquitin-protein li 98.9 4.1E-10 1.4E-14 98.8 4.5 53 1113-1166 11-63 (69)
13 2l0b_A E3 ubiquitin-protein li 98.9 4.9E-10 1.7E-14 104.3 3.5 52 1114-1166 38-89 (91)
14 1v87_A Deltex protein 2; ring- 98.9 9.7E-10 3.3E-14 105.6 4.5 54 1114-1167 23-95 (114)
15 2ect_A Ring finger protein 126 98.9 9.3E-10 3.2E-14 98.8 4.1 51 1115-1166 14-64 (78)
16 2ea6_A Ring finger protein 4; 98.8 2.1E-09 7.1E-14 93.6 3.4 51 1115-1165 14-67 (69)
17 3ng2_A RNF4, snurf, ring finge 98.8 1.9E-09 6.6E-14 94.6 3.1 53 1114-1166 8-63 (71)
18 2xeu_A Ring finger protein 4; 98.8 3E-09 1E-13 91.2 3.4 52 1115-1166 2-56 (64)
19 1chc_A Equine herpes virus-1 r 98.7 4.2E-09 1.4E-13 91.9 3.8 50 1115-1167 4-53 (68)
20 3dpl_R Ring-box protein 1; ubi 98.7 6.2E-09 2.1E-13 100.1 4.4 33 1132-1164 67-99 (106)
21 2ct2_A Tripartite motif protei 98.7 1E-08 3.5E-13 93.6 4.4 52 1115-1166 14-68 (88)
22 1g25_A CDK-activating kinase a 98.7 1.1E-08 3.8E-13 88.8 4.1 51 1116-1166 3-55 (65)
23 2djb_A Polycomb group ring fin 98.6 1.4E-08 4.8E-13 90.0 4.3 49 1115-1166 14-62 (72)
24 2ecn_A Ring finger protein 141 98.6 2.7E-09 9.4E-14 93.8 -0.9 50 1115-1169 14-63 (70)
25 4ayc_A E3 ubiquitin-protein li 98.6 7.6E-09 2.6E-13 103.3 1.9 71 1116-1191 53-125 (138)
26 1e4u_A Transcriptional repress 98.6 1E-08 3.4E-13 93.4 2.3 59 1115-1175 10-71 (78)
27 2d8t_A Dactylidin, ring finger 98.6 1.2E-08 4.1E-13 90.3 2.7 49 1114-1166 13-61 (71)
28 2csy_A Zinc finger protein 183 98.6 2.3E-08 8E-13 90.5 4.0 47 1115-1165 14-60 (81)
29 4a0k_B E3 ubiquitin-protein li 98.5 1.2E-08 4.1E-13 99.8 0.4 50 1115-1164 47-110 (117)
30 2yur_A Retinoblastoma-binding 98.5 2.8E-08 9.7E-13 88.7 2.7 50 1115-1168 14-66 (74)
31 2ecy_A TNF receptor-associated 98.5 6.2E-08 2.1E-12 84.3 4.3 48 1115-1166 14-62 (66)
32 3lrq_A E3 ubiquitin-protein li 98.5 6.2E-08 2.1E-12 91.6 3.2 48 1116-1166 22-70 (100)
33 4ap4_A E3 ubiquitin ligase RNF 98.4 5.2E-08 1.8E-12 94.8 2.7 52 1115-1166 6-60 (133)
34 2y43_A E3 ubiquitin-protein li 98.4 7.1E-08 2.4E-12 90.5 3.5 48 1116-1166 22-69 (99)
35 1t1h_A Gspef-atpub14, armadill 98.4 7E-08 2.4E-12 86.5 2.4 48 1115-1166 7-55 (78)
36 2ckl_A Polycomb group ring fin 98.4 1.1E-07 3.8E-12 90.7 3.9 49 1115-1166 14-62 (108)
37 2egp_A Tripartite motif-contai 98.4 6.2E-08 2.1E-12 86.7 2.0 48 1115-1166 11-65 (79)
38 2d8s_A Cellular modulator of i 98.4 1.1E-07 3.6E-12 87.1 3.6 51 1113-1165 12-69 (80)
39 2ysl_A Tripartite motif-contai 98.4 1.3E-07 4.5E-12 83.4 3.8 48 1114-1165 18-68 (73)
40 2ecv_A Tripartite motif-contai 98.4 1.6E-07 5.4E-12 84.7 4.3 48 1115-1166 18-71 (85)
41 2ckl_B Ubiquitin ligase protei 98.4 1.5E-07 5.2E-12 96.3 4.6 48 1116-1166 54-102 (165)
42 2ecw_A Tripartite motif-contai 98.4 1.6E-07 5.3E-12 84.7 4.1 47 1115-1165 18-70 (85)
43 2ecj_A Tripartite motif-contai 98.4 2.4E-07 8.4E-12 77.9 4.3 42 1115-1160 14-58 (58)
44 2ysj_A Tripartite motif-contai 98.4 1.7E-07 5.9E-12 80.7 3.2 42 1115-1160 19-63 (63)
45 4ap4_A E3 ubiquitin ligase RNF 98.3 2.6E-07 8.8E-12 89.9 4.0 53 1114-1166 70-125 (133)
46 3fl2_A E3 ubiquitin-protein li 98.3 1.7E-07 5.8E-12 91.5 2.3 47 1116-1166 52-99 (124)
47 3ztg_A E3 ubiquitin-protein li 98.3 2.7E-07 9.2E-12 85.2 2.8 47 1115-1165 12-61 (92)
48 3hct_A TNF receptor-associated 98.3 4.8E-07 1.6E-11 87.8 4.4 48 1115-1166 17-65 (118)
49 1jm7_A BRCA1, breast cancer ty 98.3 4.6E-07 1.6E-11 86.3 4.1 46 1116-1165 21-69 (112)
50 3l11_A E3 ubiquitin-protein li 98.2 1.8E-07 6.1E-12 90.1 0.1 47 1116-1166 15-62 (115)
51 1z6u_A NP95-like ring finger p 98.2 5.9E-07 2E-11 91.2 3.1 47 1116-1166 78-125 (150)
52 1rmd_A RAG1; V(D)J recombinati 98.2 5.7E-07 2E-11 86.7 2.8 47 1116-1166 23-70 (116)
53 2vje_A E3 ubiquitin-protein li 98.1 6.2E-07 2.1E-11 78.3 2.0 52 1112-1167 4-58 (64)
54 1bor_A Transcription factor PM 98.1 8.9E-07 3E-11 75.1 2.1 46 1113-1165 3-48 (56)
55 2vje_B MDM4 protein; proto-onc 98.1 7.8E-07 2.7E-11 77.4 1.5 51 1114-1167 5-57 (63)
56 1jm7_B BARD1, BRCA1-associated 98.0 1.3E-06 4.3E-11 84.7 2.0 45 1116-1165 22-66 (117)
57 2kr4_A Ubiquitin conjugation f 98.0 1.6E-06 5.3E-11 79.9 2.3 48 1115-1166 13-60 (85)
58 2ct0_A Non-SMC element 1 homol 98.0 3.4E-06 1.1E-10 76.2 3.4 47 1116-1165 15-63 (74)
59 2kre_A Ubiquitin conjugation f 97.9 1.9E-06 6.4E-11 81.9 1.5 48 1115-1166 28-75 (100)
60 2y1n_A E3 ubiquitin-protein li 97.9 3.5E-06 1.2E-10 97.4 4.0 49 1114-1166 330-379 (389)
61 4ic3_A E3 ubiquitin-protein li 97.9 1.7E-06 5.7E-11 77.5 1.0 43 1116-1166 24-67 (74)
62 1wgm_A Ubiquitin conjugation f 97.9 3.4E-06 1.2E-10 79.8 2.1 48 1115-1166 21-69 (98)
63 3knv_A TNF receptor-associated 97.8 3E-06 1E-10 85.2 0.3 46 1115-1164 30-76 (141)
64 3hcs_A TNF receptor-associated 97.8 1.2E-05 4.1E-10 82.5 4.0 48 1115-1166 17-65 (170)
65 2ecg_A Baculoviral IAP repeat- 97.7 1.1E-05 3.6E-10 72.3 2.5 43 1116-1166 25-68 (75)
66 2ea5_A Cell growth regulator w 97.7 1.4E-05 4.7E-10 70.8 3.1 47 1114-1168 13-60 (68)
67 2c2l_A CHIP, carboxy terminus 97.7 1.3E-05 4.4E-10 87.4 3.5 47 1115-1165 207-254 (281)
68 1wim_A KIAA0161 protein; ring 97.7 1.7E-05 5.7E-10 73.9 3.6 48 1115-1163 4-61 (94)
69 3k1l_B Fancl; UBC, ring, RWD, 97.7 1.2E-05 4.2E-10 90.9 2.1 53 1113-1165 305-372 (381)
70 2yu4_A E3 SUMO-protein ligase 97.6 2.7E-05 9.3E-10 72.8 3.3 46 1115-1163 6-59 (94)
71 2yho_A E3 ubiquitin-protein li 97.5 1.3E-05 4.3E-10 72.9 0.2 45 1116-1168 18-63 (79)
72 2f42_A STIP1 homology and U-bo 97.5 6.5E-05 2.2E-09 78.5 4.6 47 1116-1166 106-153 (179)
73 1vyx_A ORF K3, K3RING; zinc-bi 97.5 7.2E-05 2.5E-09 64.8 4.0 49 1112-1164 2-57 (60)
74 3htk_C E3 SUMO-protein ligase 97.4 4.1E-05 1.4E-09 84.1 2.4 48 1115-1165 180-231 (267)
75 3t6p_A Baculoviral IAP repeat- 97.1 0.0001 3.4E-09 84.4 1.4 43 1116-1166 295-338 (345)
76 2bay_A PRE-mRNA splicing facto 96.9 0.00031 1E-08 60.9 2.3 49 1115-1166 2-50 (61)
77 3u9j_A F-BOX/LRR-repeat protei 96.4 0.018 6E-07 57.2 10.5 146 44-194 8-156 (160)
78 3vk6_A E3 ubiquitin-protein li 96.1 0.0025 8.4E-08 60.5 2.7 49 1118-1169 3-52 (101)
79 3nw0_A Non-structural maintena 94.4 0.019 6.4E-07 62.6 3.4 45 1117-1164 181-227 (238)
80 3u9j_A F-BOX/LRR-repeat protei 93.7 1.1 3.9E-05 44.5 13.9 144 294-442 8-155 (160)
81 2ko5_A Ring finger protein Z; 89.9 0.079 2.7E-06 49.6 0.9 45 1116-1166 28-73 (99)
82 2jrp_A Putative cytoplasmic pr 80.3 0.2 6.7E-06 46.0 -1.6 63 1116-1206 2-64 (81)
83 2jrp_A Putative cytoplasmic pr 71.0 1.4 4.7E-05 40.4 1.4 49 999-1064 3-58 (81)
84 2jun_A Midline-1; B-BOX, TRIM, 69.3 2.3 7.9E-05 39.4 2.6 33 1116-1150 3-36 (101)
85 3v43_A Histone acetyltransfera 62.9 2.4 8.3E-05 40.6 1.4 72 1088-1162 23-111 (112)
86 2jne_A Hypothetical protein YF 62.5 1.9 6.4E-05 40.8 0.5 49 999-1064 33-88 (101)
87 2ysm_A Myeloid/lymphoid or mix 61.0 2.7 9.1E-05 40.1 1.3 44 1118-1162 56-103 (111)
88 2kwj_A Zinc finger protein DPF 55.2 1.3 4.5E-05 42.7 -2.0 84 1076-1164 2-109 (114)
89 2i13_A AART; DNA binding, zinc 55.1 3.2 0.00011 41.8 0.8 15 1154-1168 133-147 (190)
90 2lbm_A Transcriptional regulat 52.3 14 0.00048 37.2 4.9 89 1070-1162 12-116 (142)
91 4ayb_P DNA-directed RNA polyme 52.1 7.1 0.00024 32.3 2.2 28 1055-1082 1-33 (48)
92 2dkt_A Ring finger and CHY zin 51.4 3.6 0.00012 41.5 0.4 25 1077-1102 85-109 (143)
93 4bbq_A Lysine-specific demethy 49.1 2.6 9E-05 40.4 -1.0 45 1117-1162 60-113 (117)
94 1g47_A Pinch protein; LIM doma 45.2 10 0.00036 32.9 2.4 43 1115-1167 10-52 (77)
95 3rfy_A Peptidyl-prolyl CIS-tra 44.8 1E+02 0.0036 35.5 11.1 79 73-155 45-143 (369)
96 4gut_A Lysine-specific histone 44.3 21 0.00071 45.0 5.8 84 1107-1204 4-106 (776)
97 1wil_A KIAA1045 protein; ring 43.8 17 0.00059 33.6 3.6 34 1115-1150 14-47 (89)
98 1x61_A Thyroid receptor intera 42.1 12 0.0004 32.2 2.2 40 1116-1165 5-44 (72)
99 1x4l_A Skeletal muscle LIM-pro 41.7 14 0.00048 31.8 2.6 41 1116-1166 5-47 (72)
100 1x4k_A Skeletal muscle LIM-pro 41.3 11 0.00037 32.4 1.8 42 1116-1167 5-46 (72)
101 1wyh_A SLIM 2, skeletal muscle 39.8 9.3 0.00032 32.8 1.2 41 1116-1166 5-45 (72)
102 1weo_A Cellulose synthase, cat 39.5 42 0.0014 31.4 5.4 55 1111-1165 11-69 (93)
103 2egq_A FHL1 protein; LIM domai 39.4 13 0.00044 32.4 2.1 41 1116-1166 15-58 (77)
104 1x63_A Skeletal muscle LIM-pro 38.3 17 0.00058 32.0 2.7 42 1116-1167 15-56 (82)
105 4rxn_A Rubredoxin; electron tr 37.7 14 0.00049 31.3 2.0 14 1055-1068 1-15 (54)
106 1x68_A FHL5 protein; four-and- 36.2 14 0.00046 32.3 1.7 41 1116-1166 5-47 (76)
107 3lqh_A Histone-lysine N-methyl 35.7 17 0.00059 37.9 2.6 49 1117-1166 3-66 (183)
108 3agt_A Hemerythrin-like domain 35.6 3E+02 0.01 26.5 11.5 109 47-177 19-131 (136)
109 1e8j_A Rubredoxin; iron-sulfur 34.1 22 0.00076 29.8 2.5 13 1055-1067 1-14 (52)
110 2v3b_B Rubredoxin 2, rubredoxi 33.7 19 0.00064 30.6 2.1 14 1055-1068 1-15 (55)
111 2ehe_A Four and A half LIM dom 33.2 25 0.00086 30.9 2.9 41 1116-1166 15-55 (82)
112 1we9_A PHD finger family prote 32.3 7.1 0.00024 33.5 -0.8 47 1115-1162 5-57 (64)
113 3ql9_A Transcriptional regulat 31.9 26 0.00089 34.7 3.0 65 1094-1162 34-110 (129)
114 6rxn_A Rubredoxin; electron tr 31.7 19 0.00065 29.6 1.7 26 1055-1080 2-38 (46)
115 2pv0_B DNA (cytosine-5)-methyl 31.4 32 0.0011 39.9 4.1 85 1073-1163 51-148 (386)
116 2jne_A Hypothetical protein YF 31.3 9.3 0.00032 36.1 -0.2 24 1090-1125 47-70 (101)
117 2rgt_A Fusion of LIM/homeobox 30.8 24 0.00083 35.6 2.7 40 1116-1165 65-104 (169)
118 2cor_A Pinch protein; LIM doma 30.5 25 0.00084 31.1 2.4 40 1116-1167 15-54 (79)
119 3f6q_B LIM and senescent cell 29.8 18 0.00061 30.7 1.3 43 1115-1167 10-52 (72)
120 1nyp_A Pinch protein; LIM doma 29.6 14 0.00049 31.2 0.7 39 1116-1166 5-43 (66)
121 2d8x_A Protein pinch; LIM doma 29.6 22 0.00077 30.3 1.9 40 1116-1167 5-44 (70)
122 2jvx_A NF-kappa-B essential mo 29.4 15 0.00052 27.2 0.7 17 1154-1170 3-19 (28)
123 2cup_A Skeletal muscle LIM-pro 28.9 24 0.00081 32.3 2.1 10 1118-1127 7-16 (101)
124 1x6a_A LIMK-2, LIM domain kina 28.9 28 0.00095 30.6 2.4 38 1117-1166 16-53 (81)
125 1dx8_A Rubredoxin; electron tr 28.7 23 0.00077 31.6 1.8 14 1054-1067 4-18 (70)
126 2k16_A Transcription initiatio 28.7 13 0.00044 32.9 0.2 48 1116-1164 18-69 (75)
127 2kn9_A Rubredoxin; metalloprot 28.1 26 0.0009 32.1 2.1 15 1054-1068 24-39 (81)
128 2fiy_A Protein FDHE homolog; F 27.9 5.6 0.00019 44.8 -2.8 71 1116-1200 182-260 (309)
129 2l3k_A Rhombotin-2, linker, LI 27.7 23 0.00078 34.0 1.8 37 1118-1164 10-46 (123)
130 1iml_A CRIP, cysteine rich int 27.4 13 0.00046 32.3 0.1 70 1118-1205 2-73 (76)
131 1zfo_A LAsp-1; LIM domain, zin 27.1 24 0.00081 26.3 1.4 29 1116-1147 3-31 (31)
132 2co8_A NEDD9 interacting prote 26.8 31 0.0011 30.7 2.4 43 1114-1167 13-55 (82)
133 2dar_A PDZ and LIM domain prot 26.5 27 0.00091 31.5 1.9 41 1114-1166 23-63 (90)
134 2ysm_A Myeloid/lymphoid or mix 26.2 28 0.00096 32.9 2.1 72 1114-1206 5-82 (111)
135 2lri_C Autoimmune regulator; Z 26.1 37 0.0013 29.7 2.6 43 1116-1162 12-58 (66)
136 2ko5_A Ring finger protein Z; 25.4 19 0.00066 33.9 0.8 23 1053-1075 24-50 (99)
137 1x62_A C-terminal LIM domain p 24.8 27 0.00092 30.7 1.6 38 1116-1165 15-52 (79)
138 3jyw_9 60S ribosomal protein L 24.6 31 0.0011 31.0 1.9 24 1056-1079 25-51 (72)
139 1s24_A Rubredoxin 2; electron 24.5 26 0.00089 32.5 1.4 17 1052-1068 30-47 (87)
140 1v6g_A Actin binding LIM prote 24.2 38 0.0013 29.8 2.4 46 1109-1166 8-53 (81)
141 2cup_A Skeletal muscle LIM-pro 24.1 34 0.0012 31.2 2.2 31 1115-1147 65-95 (101)
142 3i2d_A E3 SUMO-protein ligase 23.4 46 0.0016 38.4 3.5 47 1116-1165 249-299 (371)
143 2cur_A Skeletal muscle LIM-pro 23.3 36 0.0012 28.8 2.1 38 1116-1165 5-42 (69)
144 1wii_A Hypothetical UPF0222 pr 23.2 25 0.00085 32.5 1.1 12 1114-1125 45-56 (85)
145 1x3h_A Leupaxin; paxillin fami 23.0 39 0.0013 29.4 2.3 40 1116-1167 15-54 (80)
146 1twf_L ABC10-alpha, DNA-direct 22.9 39 0.0013 30.1 2.2 23 1057-1079 28-52 (70)
147 1rij_A E6APN1 peptide; Trp-CAG 22.8 46 0.0016 23.5 2.0 17 234-250 2-19 (26)
148 3izc_m 60S ribosomal protein R 22.8 29 0.001 32.5 1.4 10 1071-1080 53-62 (92)
149 1wig_A KIAA1808 protein; LIM d 22.4 38 0.0013 29.4 2.1 38 1116-1165 5-42 (73)
150 2dj7_A Actin-binding LIM prote 22.2 40 0.0014 29.9 2.2 41 1115-1166 14-54 (80)
151 2cu8_A Cysteine-rich protein 2 22.2 29 0.00098 30.1 1.2 40 1116-1166 9-48 (76)
152 3agt_A Hemerythrin-like domain 22.1 5.3E+02 0.018 24.7 13.4 112 295-427 17-132 (136)
153 4fo9_A E3 SUMO-protein ligase 21.9 58 0.002 37.4 4.0 47 1116-1165 215-265 (360)
154 2kdx_A HYPA, hydrogenase/ureas 21.8 38 0.0013 32.6 2.1 26 1056-1081 72-99 (119)
155 1x64_A Alpha-actinin-2 associa 21.5 45 0.0015 29.9 2.4 42 1114-1167 23-64 (89)
156 3cc2_Z 50S ribosomal protein L 21.3 25 0.00084 34.3 0.6 29 1056-1084 59-90 (116)
157 2vpb_A Hpygo1, pygopus homolog 21.2 13 0.00044 32.5 -1.2 47 1115-1161 7-64 (65)
158 3cw1_L U1 small nuclear ribonu 21.2 25 0.00084 32.0 0.6 12 1055-1066 1-12 (77)
159 2dlq_A GLI-kruppel family memb 21.0 52 0.0018 30.0 2.8 11 1155-1165 95-105 (124)
160 3pfq_A PKC-B, PKC-beta, protei 20.9 41 0.0014 41.3 2.6 41 1107-1147 102-145 (674)
161 3iz5_m 60S ribosomal protein L 20.8 31 0.0011 32.4 1.1 8 1091-1098 54-61 (92)
162 3mjh_B Early endosome antigen 20.5 33 0.0011 26.5 1.1 16 1154-1169 5-20 (34)
163 2iyb_E Testin, TESS, TES; LIM 20.4 30 0.001 29.3 0.9 39 1118-1166 4-44 (65)
164 3kdw_A Putative sugar binding 20.1 4.5E+02 0.015 28.0 9.7 144 93-243 7-166 (221)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=4e-48 Score=385.53 Aligned_cols=138 Identities=45% Similarity=1.056 Sum_probs=132.2
Q ss_pred CCCCCccccccccCCCccccccccccccccCCcccCcccccccCCCCcccccccccccccccccccCCCCCCCCCCCCcc
Q 000963 975 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1054 (1208)
Q Consensus 975 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~ 1054 (1208)
|..|+|+|++++++||+||+|+|+|+||||+||||||+||||.++|+++|+.+++|+||.|+++||+++.|.+ | |..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~--C-g~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCB
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhccccccccchhccceeeecccCccccccCcCCC--C-Ccc
Confidence 5578999999999999999999999999999999999999999999999999999999999999999999988 5 899
Q ss_pred cceEecCcccCcCCCCccccCCCCCccccCCCCCccccccCCccccccccc-cccccccCCcCC
Q 000963 1055 MAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLET 1117 (1208)
Q Consensus 1055 ~a~y~C~~C~l~d~~k~~yHC~~CgiCRvG~gl~~~~fHC~~C~~C~~~~l-~~H~C~e~~~~~ 1117 (1208)
|++|||+||||||++|+||||++|||||||+ |+|||||++||+|+++++ ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccC--CcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 9999999999999889999999999999997 599999999999999999 899999998764
No 2
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.47 E-value=5.2e-13 Score=137.55 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=119.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CcccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh--------h
Q 000963 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSG-DFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL--------S 361 (1208)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~i~~~g-d~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~--------~ 361 (1208)
..||+.|...|+.||+.+..|...+..+...| +...+..++.-+.+|...+..||..||++|||+|..+. .
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 56999999999999999999998887764333 22334677888889999999999999999999997642 8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHhH
Q 000963 362 FAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQS 441 (1208)
Q Consensus 362 me~EH~~ie~l~e~l~~ll~~l~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hl~~EE~qvfPLl~~~fS~eEq~eL~~~~ 441 (1208)
|..||..+...++.|...+..+..+.... . .+..+..+.+.+..|+.+||+ +||++.+.+|.++|.+|+.++
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~-~------~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~ 166 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYV-P------DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIM 166 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCC-C------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCc-c------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHH
Confidence 89999999999999999887776443211 1 125567778899999999999 999999999999999999876
Q ss_pred hh
Q 000963 442 LC 443 (1208)
Q Consensus 442 l~ 443 (1208)
..
T Consensus 167 ~~ 168 (172)
T 2p0n_A 167 AA 168 (172)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.43 E-value=1.4e-12 Score=134.45 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=122.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhh---hhHHHH
Q 000963 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRV---KNIART 117 (1208)
Q Consensus 41 ~~Pi~~~~~~HkAlR~eL~~l~~~a~~~~~~~gd~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaLd~Rv---~~v~~~ 117 (1208)
+.||+++.--|+.+|+.|..|..++..+.....+......+.+-+++|...++.||..|++++||+|..+. .+++..
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 34999999999999999999988887776411233344677778888999999999999999999998765 467899
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhcCCHHHHHHHHHHHhc
Q 000963 118 YSLEHEGESVLFDQLFELLNSSMRNEE--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1208)
Q Consensus 118 ~~~EH~~~~~lf~~L~~~l~~~~~~~~--~~~~eLa~~l~~l~~~l~qHm~~EE~qv~PLl~~~fS~~E~a~L~~~~i~ 194 (1208)
+..||..+..+++.|...+..+..+.. .. +..+..+...+.+|+++||. +||.+.+.+|.++|.+|+.++.+
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~~----~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~~~ 168 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYVPD----EEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIMAA 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCCC----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999988864432 11 14455566699999999999 99999999999999999998753
No 4
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=6.9e-13 Score=121.09 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=16.4
Q ss_pred CCCCCcCccchhHhhhhcHHHHhhcCCcHHhhccccEEEcCCCCCcCccc
Q 000963 1157 CPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQVKILHIFKLLGSFK 1206 (1208)
Q Consensus 1157 CPiCrksl~~m~~~~~~lD~~i~~~pmP~ey~~~~~~IlCndc~~~~~~~ 1206 (1208)
||+|+|++.||+.+|++||++|+++|||++|+++.+.|+||||+..+.++
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~ 50 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQ 50 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEE
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCC
Confidence 89999999999999999999999999999999999999999999988764
No 5
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.23 E-value=6.9e-11 Score=135.82 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=123.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcccCC----cccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh------
Q 000963 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD----FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL------ 360 (1208)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~i~~~gd----~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~------ 360 (1208)
-+|++.|...|++||+.|..|...+.++..... ...+..+.+-+.+|.++-..|+..|+++|||+|+.+-
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~~ 87 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIAT 87 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCCCc
Confidence 569999999999999999999999999863332 2467889999999977443788889999999997552
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Q 000963 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1208)
Q Consensus 361 ~me~EH~~ie~l~e~l~~ll~~l~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hl~~EE~qvfPLl~~~fS~eEq~eL~~~ 440 (1208)
.|..||+++..++..+..++..... . + ..+.+..+...+..+...+.+|+.+||+.|||++.+.||.++|..+..+
T Consensus 88 vM~~eHd~~r~~l~~l~~~~~~~~~-~-~--~~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~ 163 (369)
T 3cax_A 88 VLWTKHDEIRAMIKQLAELLRKREE-M-P--WEEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQ 163 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGG-S-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHhcccc-c-c--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 8999999999999999999965331 1 1 0244677888899999999999999999999999999999999999775
Q ss_pred Hhh
Q 000963 441 SLC 443 (1208)
Q Consensus 441 ~l~ 443 (1208)
+-.
T Consensus 164 ~~e 166 (369)
T 3cax_A 164 EDE 166 (369)
T ss_dssp GGG
T ss_pred Ccc
Confidence 543
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.06 E-value=8.3e-11 Score=98.45 Aligned_cols=52 Identities=35% Similarity=0.866 Sum_probs=46.2
Q ss_pred CcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
..+..||||++.+.++...++.++|||.||..|+.+|+....+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578899999997777777888999999999999999998899999998764
No 7
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.98 E-value=4.5e-09 Score=120.74 Aligned_cols=150 Identities=23% Similarity=0.265 Sum_probs=128.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-----chHHHHHHHHHHHHHHHHHhhccccccchhhHHHh-hhhH
Q 000963 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGG-----GDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIR-VKNI 114 (1208)
Q Consensus 41 ~~Pi~~~~~~HkAlR~eL~~l~~~a~~~~~~~gd~-----~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaLd~R-v~~v 114 (1208)
..|+..|.-=|+.||+.|..|..++..+.. +.. ..+..+.+-+++|..+-+.|+.-|-++|||.|+.+ ..+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~--~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p 85 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLAT--TKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVI 85 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCC
Confidence 459999999999999999999999999887 553 57888888899997744367777777999999644 3678
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhcCCHHHHHHHHHHH
Q 000963 115 ARTYSLEHEGESVLFDQLFELLNSSMRNE-ESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQF 192 (1208)
Q Consensus 115 ~~~~~~EH~~~~~lf~~L~~~l~~~~~~~-~~~~~eLa~~l~~l~~~l~qHm~~EE~qv~PLl~~~fS~~E~a~L~~~~ 192 (1208)
+..|..||.++..+++.+..+++.....+ ...++.+...+.++...+.+|+++||.-+||.+.+.||.+||..+..++
T Consensus 86 ~~vM~~eHd~~r~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~~ 164 (369)
T 3cax_A 86 ATVLWTKHDEIRAMIKQLAELLRKREEMPWEEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQE 164 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHG
T ss_pred CchHHHHhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999999998865333 3446778888888888999999999999999999999999999998864
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.8e-10 Score=101.17 Aligned_cols=58 Identities=24% Similarity=0.646 Sum_probs=48.3
Q ss_pred cccCCcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccchh
Q 000963 1110 CREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMA 1168 (1208)
Q Consensus 1110 C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m~ 1168 (1208)
-.+...+..|+||++. |.....+..++|||.||..|+.+|+..+.+||+||+.+..+.
T Consensus 9 ~~~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 9 VKELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred cccCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 3445567899999998 555556777899999999999999998899999999887653
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.96 E-value=3.1e-10 Score=95.10 Aligned_cols=50 Identities=32% Similarity=0.743 Sum_probs=41.7
Q ss_pred cCCCccccccccccCCCceeecC-CCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
.+..|+||++.+. ..+.+..++ |||.||..|+.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELE-DGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCC-TTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCcccc-CCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3578999999854 444566676 9999999999999999999999998763
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.3e-10 Score=103.33 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=40.7
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
+..||||++++......+..++|||.||..||.+|+..+.+||+||+.+.
T Consensus 26 ~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred hccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 56799999885544444444569999999999999999999999999765
No 11
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=2.3e-10 Score=102.30 Aligned_cols=52 Identities=33% Similarity=0.728 Sum_probs=45.2
Q ss_pred CcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
..+..|+||++. |.....++.+||||.||..|+..|+..+.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 356789999998 5555677889999999999999999999999999998764
No 12
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.94 E-value=4.1e-10 Score=98.75 Aligned_cols=53 Identities=30% Similarity=0.763 Sum_probs=44.9
Q ss_pred CCcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
...+..|+||++. |.....++.++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3457789999998 4455567789999999999999999999999999987753
No 13
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.90 E-value=4.9e-10 Score=104.27 Aligned_cols=52 Identities=31% Similarity=0.830 Sum_probs=44.4
Q ss_pred CcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
..+..|+||++. |.....++.+||||.||..|+..|+..+.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 346789999998 4455567789999999999999999999999999987753
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.87 E-value=9.7e-10 Score=105.63 Aligned_cols=54 Identities=30% Similarity=0.554 Sum_probs=42.5
Q ss_pred CcCCCccccccccccCC--------------CceeecCCCCcCChhhHHHHH-----hcCCCCCCCCcCccch
Q 000963 1114 GLETNCPICCDFLFTSS--------------ATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~--------------~~v~~LpCGH~fH~~Ci~~~~-----~~~~~CPiCrksl~~m 1167 (1208)
..+..||||++++.... ..++.++|||.||..||..|+ ..+.+||+||+.+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34678999999964432 234478999999999999999 4567999999987653
No 15
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.87 E-value=9.3e-10 Score=98.78 Aligned_cols=51 Identities=35% Similarity=0.875 Sum_probs=44.2
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.+..|+||++. |.....+..++|||.||..|+..|+..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 46789999998 5555567789999999999999999989999999998764
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.1e-09 Score=93.63 Aligned_cols=51 Identities=27% Similarity=0.618 Sum_probs=42.8
Q ss_pred cCCCccccccccccC---CCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
....||||++.+... ...++.++|||.||..|+..|+..+.+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 467899999986543 234467999999999999999999999999998764
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.79 E-value=1.9e-09 Score=94.63 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=44.2
Q ss_pred CcCCCccccccccccC---CCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
..+..||||++.+... ...++.++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3467899999986543 3445779999999999999999999999999998763
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.76 E-value=3e-09 Score=91.23 Aligned_cols=52 Identities=27% Similarity=0.617 Sum_probs=43.2
Q ss_pred cCCCccccccccccC---CCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.+..||||++.+... ...+..++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 356899999986542 3445678999999999999999999999999998764
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.74 E-value=4.2e-09 Score=91.95 Aligned_cols=50 Identities=26% Similarity=0.599 Sum_probs=42.8
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
.+..||||++.+. .+++.++|||.||..|+..|+..+.+||+||+.+..+
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 3678999999832 3567899999999999999999899999999988754
No 20
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.71 E-value=6.2e-09 Score=100.14 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=30.2
Q ss_pred ceeecCCCCcCChhhHHHHHhcCCCCCCCCcCc
Q 000963 1132 TVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164 (1208)
Q Consensus 1132 ~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl 1164 (1208)
+++.++|||.||..||..|+..+.+||+||+.+
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 467789999999999999999999999999874
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1e-08 Score=93.55 Aligned_cols=52 Identities=29% Similarity=0.611 Sum_probs=42.6
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcC---CCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH---YICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~---~~CPiCrksl~~ 1166 (1208)
....||||++.+.......+.++|||.||..|+..|+... .+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3578999999855544446678999999999999999875 899999997753
No 22
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=1.1e-08 Score=88.78 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=41.1
Q ss_pred CCCcccccc-ccccCCCceeecCCCCcCChhhHHHHHh-cCCCCCCCCcCccc
Q 000963 1116 ETNCPICCD-FLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle-~lf~s~~~v~~LpCGH~fH~~Ci~~~~~-~~~~CPiCrksl~~ 1166 (1208)
+..||||++ .+.+.....+.++|||.||..|+..|+. ...+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 6555544446689999999999999964 45789999998763
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.4e-08 Score=90.02 Aligned_cols=49 Identities=20% Similarity=0.430 Sum_probs=41.4
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.+..||||++.+.+ ++...+|||.||..|+..|+....+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 36789999997433 55556999999999999999989999999998764
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.7e-09 Score=93.76 Aligned_cols=50 Identities=30% Similarity=0.612 Sum_probs=42.2
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccchhH
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAV 1169 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m~~ 1169 (1208)
....||||++.+. . +.++|||.||..|+..|+..+.+||+||+.+.....
T Consensus 14 ~~~~C~IC~~~~~-~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 14 DEEECCICMDGRA-D----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCSSSCCSCC-S----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCeeCCcCcc-C----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 4678999999743 2 668999999999999999989999999998875443
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.62 E-value=7.6e-09 Score=103.25 Aligned_cols=71 Identities=27% Similarity=0.593 Sum_probs=49.5
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccchhHhhhhcHHHHhh--cCCcHHhhccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLAS--EQLPEEYRDRC 1191 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m~~~~~~lD~~i~~--~pmP~ey~~~~ 1191 (1208)
+..||||++.+. .+ +.+||||.||..|+..|+..+.+||+||+.+...... -.++..+.. ..++++++..+
T Consensus 53 ~~~C~iC~~~~~---~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~-~~~~~~i~~~~~~l~~~~~~rr 125 (138)
T 4ayc_A 53 ELQCIICSEYFI---EA-VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS-LVLDNCINKMVNNLSSEVKERR 125 (138)
T ss_dssp HSBCTTTCSBCS---SE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEEC-HHHHHHHHHHHTTSCHHHHHHH
T ss_pred cCCCcccCcccC---Cc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCc-cchhHHHHHHHHHhhHHHHHHH
Confidence 457999999843 23 4589999999999999999999999999998643211 122333322 34677765443
No 26
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.61 E-value=1e-08 Score=93.41 Aligned_cols=59 Identities=20% Similarity=0.535 Sum_probs=44.8
Q ss_pred cCCCccccccccccCCCceeec--CCCCcCChhhHHHHHh-cCCCCCCCCcCccchhHhhhhcH
Q 000963 1115 LETNCPICCDFLFTSSATVRAL--PCGHFMHSDCFQAYTC-SHYICPICSKSLGDMAVYFGMLD 1175 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~L--pCGH~fH~~Ci~~~~~-~~~~CPiCrksl~~m~~~~~~lD 1175 (1208)
.+..||||+|.+ +.. ++.++ +|||.||..|+..++. ..+.||+||+.+.+....|+.++
T Consensus 10 ~~~~CpICle~~-~~~-d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 71 (78)
T 1e4u_A 10 DPVECPLCMEPL-EID-DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLS 71 (78)
T ss_dssp CCCBCTTTCCBC-CTT-TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCC
T ss_pred cCCcCCccCccC-ccc-cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCC
Confidence 467899999974 322 23344 4999999999999864 46899999999988766666554
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.2e-08 Score=90.25 Aligned_cols=49 Identities=20% Similarity=0.496 Sum_probs=40.8
Q ss_pred CcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
..+..||||++.+. ++ +.++|||.||..|+..|+....+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~---~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV---HP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS---SE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC---CC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34678999999742 23 457999999999999999988999999998763
No 28
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=2.3e-08 Score=90.48 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=40.4
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
....||||++.+. .++ .++|||.||..|+..|+....+||+|++.+.
T Consensus 14 ~~~~C~IC~~~~~---~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ---NPV-VTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC---SEE-ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc---Cee-EccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4568999999843 244 5899999999999999998999999999886
No 29
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.53 E-value=1.2e-08 Score=99.84 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=1.0
Q ss_pred cCCCccccccccccC--------------CCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCc
Q 000963 1115 LETNCPICCDFLFTS--------------SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s--------------~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl 1164 (1208)
.+.+|+||++++-.. ...+..++|||.||..||.+|+..+.+||+||+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 357899999885431 12344479999999999999999999999999864
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.52 E-value=2.8e-08 Score=88.69 Aligned_cols=50 Identities=26% Similarity=0.556 Sum_probs=40.0
Q ss_pred cCCCccccccccccCCCceeecC-CCCcCChhhHHHHHhcC--CCCCCCCcCccchh
Q 000963 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCSH--YICPICSKSLGDMA 1168 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CGH~fH~~Ci~~~~~~~--~~CPiCrksl~~m~ 1168 (1208)
.+..||||++.+. .++. ++ |||.||..|+..|+..+ .+||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMT---DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCT---TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHh---CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3678999999743 2444 88 99999999999999765 79999999765544
No 31
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.2e-08 Score=84.31 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=39.1
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHH-hcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-CSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~-~~~~~CPiCrksl~~ 1166 (1208)
.+..||||++.+.+ ++. ++|||.||..|+..|+ ....+||+|++.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS---PKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESS---CCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcC---eeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35789999998432 333 7999999999999999 467899999998764
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.45 E-value=6.2e-08 Score=91.57 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=40.8
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcC-CCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~-~~CPiCrksl~~ 1166 (1208)
+..||||++.+. .++..++|||.||..||..|+... ..||+||+.+..
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 568999999743 356659999999999999999877 799999998853
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.45 E-value=5.2e-08 Score=94.85 Aligned_cols=52 Identities=27% Similarity=0.609 Sum_probs=43.6
Q ss_pred cCCCccccccccccC---CCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.+..||||++.+.+. ...++.++|||.||..|+.+|+..+.+||+|++.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 467899999985443 3445779999999999999999999999999998864
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.45 E-value=7.1e-08 Score=90.53 Aligned_cols=48 Identities=21% Similarity=0.559 Sum_probs=40.9
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
+..||||++.+. +++..++|||.||..|+..|+..+.+||+|++.+..
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 568999999743 355556999999999999999988999999998864
No 35
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.41 E-value=7e-08 Score=86.48 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=39.9
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhc-CCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~-~~~CPiCrksl~~ 1166 (1208)
.+..||||++.+. +|+. ++|||.||..|+..|+.. +.+||+|++.+..
T Consensus 7 ~~~~C~IC~~~~~---~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMK---DPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCS---SEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCcccccc---CCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4678999999743 3444 799999999999999986 7899999998853
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.41 E-value=1.1e-07 Score=90.72 Aligned_cols=49 Identities=20% Similarity=0.572 Sum_probs=41.9
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.+..||||++.+. +++..++|||.||..|+..|+..+..||+|++.+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3678999999743 366656999999999999999988999999998874
No 37
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.41 E-value=6.2e-08 Score=86.69 Aligned_cols=48 Identities=31% Similarity=0.729 Sum_probs=39.1
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhc-------CCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-------HYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~-------~~~CPiCrksl~~ 1166 (1208)
.+..||||++.+.. ++ .++|||.||..|+..|+.. ..+||+||+.+..
T Consensus 11 ~~~~C~IC~~~~~~---p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE---PL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS---CC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC---ee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 36789999998432 33 3899999999999999876 6789999998763
No 38
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.1e-07 Score=87.10 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=40.9
Q ss_pred CCcCCCccccccccccCCCceeecCCC-----CcCChhhHHHHHhcC--CCCCCCCcCcc
Q 000963 1113 KGLETNCPICCDFLFTSSATVRALPCG-----HFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1208)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCG-----H~fH~~Ci~~~~~~~--~~CPiCrksl~ 1165 (1208)
...+..|+||+++ |+...++ ++||+ |+||..|+++|+..+ .+||+|+..+.
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCcc-ccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3456789999987 5444554 68996 999999999998764 68999998775
No 39
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.3e-07 Score=83.43 Aligned_cols=48 Identities=31% Similarity=0.727 Sum_probs=38.9
Q ss_pred CcCCCccccccccccCCCceeecCCCCcCChhhHHHHHh---cCCCCCCCCcCcc
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC---SHYICPICSKSLG 1165 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~---~~~~CPiCrksl~ 1165 (1208)
..+..||||++.+. .+ +.++|||.||..|+..|+. ...+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~~---~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS---SE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC---Ce-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34678999999733 23 4479999999999999986 4678999999875
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.6e-07 Score=84.69 Aligned_cols=48 Identities=33% Similarity=0.728 Sum_probs=39.5
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhc------CCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS------HYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~------~~~CPiCrksl~~ 1166 (1208)
....||||++.+.. + +.++|||.||..|+..|+.. ...||+|++.+..
T Consensus 18 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---P-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS---C-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC---c-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 46789999997432 3 34799999999999999876 7899999998763
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.39 E-value=1.5e-07 Score=96.30 Aligned_cols=48 Identities=38% Similarity=0.668 Sum_probs=40.5
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhc-CCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~-~~~CPiCrksl~~ 1166 (1208)
+..||||++.+. .++..++|||.||..|+..|+.. +..||+|++.+..
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 458999999843 36666799999999999999986 7889999998854
No 42
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.39 E-value=1.6e-07 Score=84.72 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=39.1
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhc------CCCCCCCCcCcc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS------HYICPICSKSLG 1165 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~------~~~CPiCrksl~ 1165 (1208)
.+..||||++.+. .++ .++|||.||..|+..|+.. ...||+|++.+.
T Consensus 18 ~~~~C~IC~~~~~---~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLK---EPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCS---SCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhC---cce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3678999999743 234 5899999999999999876 778999999875
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.4e-07 Score=77.95 Aligned_cols=42 Identities=26% Similarity=0.848 Sum_probs=34.0
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHH---hcCCCCCCC
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT---CSHYICPIC 1160 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~---~~~~~CPiC 1160 (1208)
.+..||||++.+.+ + +.++|||.||..|+..|+ ....+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---P-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---C-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---c-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46789999998433 3 348999999999999995 456899998
No 44
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.7e-07 Score=80.67 Aligned_cols=42 Identities=36% Similarity=0.856 Sum_probs=34.4
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHh---cCCCCCCC
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC---SHYICPIC 1160 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~---~~~~CPiC 1160 (1208)
.+..||||++.+. +++ .++|||.||..|+..|+. ...+||+|
T Consensus 19 ~~~~C~IC~~~~~---~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ---KPV-TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS---SCE-ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC---CeE-EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4678999999743 234 479999999999999997 45789998
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.32 E-value=2.6e-07 Score=89.91 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=43.6
Q ss_pred CcCCCccccccccccC---CCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.....||||++.+... ...++.++|||.||..|+++|+..+.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4467899999985432 2334678999999999999999999999999998864
No 46
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.30 E-value=1.7e-07 Score=91.54 Aligned_cols=47 Identities=26% Similarity=0.678 Sum_probs=38.7
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhc-CCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~-~~~CPiCrksl~~ 1166 (1208)
+..||||++.+. .++ .++|||.||..|+..|+.. .+.||+||+.+..
T Consensus 52 ~~~C~IC~~~~~---~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF---RPI-TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS---SEE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc---CcE-EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 567999999744 244 4799999999999999974 4699999998865
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.27 E-value=2.7e-07 Score=85.24 Aligned_cols=47 Identities=28% Similarity=0.626 Sum_probs=38.0
Q ss_pred cCCCccccccccccCCCceeecC-CCCcCChhhHHHHHhc--CCCCCCCCcCcc
Q 000963 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCS--HYICPICSKSLG 1165 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CGH~fH~~Ci~~~~~~--~~~CPiCrksl~ 1165 (1208)
.+..||||++.+. +|+ .++ |||.||..|+..|+.. ...||+|++.+.
T Consensus 12 ~~~~C~IC~~~~~---~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT---DAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS---SCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc---Cce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3678999999744 244 478 9999999999999864 379999999873
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.26 E-value=4.8e-07 Score=87.78 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=39.2
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcC-CCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~-~~CPiCrksl~~ 1166 (1208)
.+..||||++.+. .++ .++|||.||..|+..|+... .+||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~---~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALR---EAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCS---SEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhc---CeE-ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3568999998743 244 47999999999999998765 499999998875
No 49
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.25 E-value=4.6e-07 Score=86.30 Aligned_cols=46 Identities=24% Similarity=0.673 Sum_probs=37.6
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcC---CCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH---YICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~---~~CPiCrksl~ 1165 (1208)
...||||++.+. .++ .++|||.||..|+..|+... .+||+|++.+.
T Consensus 21 ~~~C~IC~~~~~---~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIK---EPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCS---SCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhc---CeE-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 568999999743 233 37999999999999999754 58999999875
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.21 E-value=1.8e-07 Score=90.14 Aligned_cols=47 Identities=34% Similarity=0.858 Sum_probs=38.9
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhc-CCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~-~~~CPiCrksl~~ 1166 (1208)
+..||||++.+.. ++ .++|||.||..|+..|+.. ...||+||+.+..
T Consensus 15 ~~~C~iC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE---PV-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS---CE-ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc---ee-EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 5679999998543 34 4799999999999999865 6899999998864
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.17 E-value=5.9e-07 Score=91.22 Aligned_cols=47 Identities=28% Similarity=0.689 Sum_probs=38.9
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcC-CCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~-~~CPiCrksl~~ 1166 (1208)
+..||||++.+. .++. ++|||.||..|+..|+... ++||+||..+..
T Consensus 78 ~~~C~IC~~~~~---~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVY---QPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCS---SEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhc---CCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 568999999743 3444 8999999999999999765 589999998874
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.17 E-value=5.7e-07 Score=86.73 Aligned_cols=47 Identities=23% Similarity=0.462 Sum_probs=39.6
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhc-CCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~-~~~CPiCrksl~~ 1166 (1208)
+..||||++.+. .++. ++|||.||..|+..|+.. ..+||+|++.+..
T Consensus 23 ~~~C~IC~~~~~---~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA---DPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS---SEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc---CcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 568999998743 3444 899999999999999986 7899999998864
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.13 E-value=6.2e-07 Score=78.29 Aligned_cols=52 Identities=17% Similarity=0.385 Sum_probs=41.2
Q ss_pred cCCcCCCccccccccccCCCceeec--CCCCc-CChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1112 EKGLETNCPICCDFLFTSSATVRAL--PCGHF-MHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~~v~~L--pCGH~-fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
....+..|+||++. ..+. .++ ||||. ++..|+..|...+..||+||+.+.+.
T Consensus 4 ~~~~~~~C~IC~~~---~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 4 PLNAIEPCVICQGR---PKNG-CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp -CGGGSCCTTTSSS---CSCE-EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCcCCCC---CCCE-EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 44567899999986 2233 344 99999 89999999998889999999988653
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.10 E-value=8.9e-07 Score=75.09 Aligned_cols=46 Identities=30% Similarity=0.548 Sum_probs=36.3
Q ss_pred CCcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
...+..||||++.+.+ + +.++|||.||..|+.. ....||+||+.+.
T Consensus 3 e~~~~~C~IC~~~~~~---p-~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC---P-KLLPCLHTLCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBC---C-SCSTTSCCSBTTTCSS---SSSSCSSCCSSSS
T ss_pred cccCCCceEeCCccCC---e-EEcCCCCcccHHHHcc---CCCCCCcCCcEee
Confidence 3456789999997432 2 4589999999999976 4678999999775
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.08 E-value=7.8e-07 Score=77.42 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=40.3
Q ss_pred CcCCCccccccccccCCCce-eecCCCCc-CChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1114 GLETNCPICCDFLFTSSATV-RALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v-~~LpCGH~-fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
.....|+||++. ..+++ ..+||||. |+..|+..|...+..||+||+.+.+.
T Consensus 5 ~~~~~C~IC~~~---~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKR---PRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSS---BSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCc---CCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 346789999986 22223 23499998 99999999988888999999988653
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.03 E-value=1.3e-06 Score=84.69 Aligned_cols=45 Identities=24% Similarity=0.492 Sum_probs=37.2
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
+..||||++.+. .++...+|||.||..|+..|+. ..||+|++.+.
T Consensus 22 ~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 678999999743 3444349999999999999987 88999999874
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.01 E-value=1.6e-06 Score=79.91 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=40.2
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.+..||||++.|-+ || .++|||.|++.||..|+..+.+||+|+..+..
T Consensus 13 ~~~~CpI~~~~m~d---PV-~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PV-RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EE-ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---Ce-ECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 36789999997433 44 47899999999999999988999999998753
No 58
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=3.4e-06 Score=76.23 Aligned_cols=47 Identities=30% Similarity=0.584 Sum_probs=38.1
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcC--CCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~--~~CPiCrksl~ 1165 (1208)
..+|+||.+.+. .. ..-..|||.||..||.+|++.+ .+||+|+....
T Consensus 15 i~~C~IC~~~i~-~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLI-QG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCS-SS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcc-cC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 578999999754 32 3334999999999999999877 89999997654
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.95 E-value=1.9e-06 Score=81.93 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=40.3
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.+..||||++.|.+ ||. ++|||.|++.||..|+..+.+||+|+..+..
T Consensus 28 ~~~~CpI~~~~m~d---PV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVR-LPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEE-ETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeE-CCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 36789999987432 454 7899999999999999888999999998753
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.94 E-value=3.5e-06 Score=97.38 Aligned_cols=49 Identities=27% Similarity=0.646 Sum_probs=40.4
Q ss_pred CcCCCccccccccccCCCceeecCCCCcCChhhHHHHHh-cCCCCCCCCcCccc
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGD 1166 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~-~~~~CPiCrksl~~ 1166 (1208)
.....|+||++.+ . ..+.+||||.||..|+..|+. ...+||+||+.+..
T Consensus 330 ~~~~~C~ICle~~---~-~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAEND---K-DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSB---C-CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCC---C-CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3457899999873 2 245689999999999999998 67899999998764
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.94 E-value=1.7e-06 Score=77.52 Aligned_cols=43 Identities=33% Similarity=0.732 Sum_probs=35.9
Q ss_pred CCCccccccccccCCCceeecCCCCc-CChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
+..|+||++.+. ..+.+||||. |+..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 578999998732 2456899999 999999888 899999998865
No 62
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.89 E-value=3.4e-06 Score=79.83 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=40.3
Q ss_pred cCCCccccccccccCCCceeecCCC-CcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCG-H~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.+..||||++.|.+ ||. ++|| |.|++.||..|+..+.+||+|+..+..
T Consensus 21 ~~~~CpI~~~~m~d---PV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 36789999987432 454 8999 999999999999888999999998763
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.81 E-value=3e-06 Score=85.19 Aligned_cols=46 Identities=24% Similarity=0.454 Sum_probs=37.7
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcC-CCCCCCCcCc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSL 1164 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~-~~CPiCrksl 1164 (1208)
.+..||||++.+.. ++. ++|||.||..||..|+... .+||+||+.+
T Consensus 30 ~~~~C~IC~~~~~~---pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS---EEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC---cEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 36789999997443 444 7999999999999999765 5899999965
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.77 E-value=1.2e-05 Score=82.49 Aligned_cols=48 Identities=29% Similarity=0.565 Sum_probs=39.4
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhc-CCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~-~~~CPiCrksl~~ 1166 (1208)
.+..||||++.+.+ |+. ++|||.|+..|+..|+.. ..+||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~~---pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSS---EEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcC---cEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 35789999997443 444 899999999999999865 4599999998875
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=1.1e-05 Score=72.30 Aligned_cols=43 Identities=33% Similarity=0.725 Sum_probs=34.4
Q ss_pred CCCccccccccccCCCceeecCCCCc-CChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
+..|+||++.+. ..+.+||||. |+..|+.. ...||+||+.+..
T Consensus 25 ~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 567999998732 2455899999 99999954 4789999998865
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=1.4e-05 Score=70.75 Aligned_cols=47 Identities=21% Similarity=0.571 Sum_probs=37.5
Q ss_pred CcCCCccccccccccCCCceeecCCCCc-CChhhHHHHHhcCCCCCCCCcCccchh
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMA 1168 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~~~~~~~~CPiCrksl~~m~ 1168 (1208)
.....|+||++. ...++++||||. |+..|+.. ...||+||..+...-
T Consensus 13 ~~~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 13 ENSKDCVVCQNG----TVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCSSCCSSSSSS----CCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCcCcC----CCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 346789999986 224677999999 99999974 478999999887643
No 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.71 E-value=1.3e-05 Score=87.37 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=38.0
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhc-CCCCCCCCcCcc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLG 1165 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~-~~~CPiCrksl~ 1165 (1208)
....||||++.|. +||+ +||||+|+..||..|+.. ..+||+|+.++.
T Consensus 207 ~~~~c~i~~~~~~---dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMR---EPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCS---SEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHhc---CCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3567999998733 3554 889999999999999875 455999999885
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.71 E-value=1.7e-05 Score=73.91 Aligned_cols=48 Identities=19% Similarity=0.498 Sum_probs=36.8
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhc--------CCCCCC--CCcC
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS--------HYICPI--CSKS 1163 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~--------~~~CPi--Crks 1163 (1208)
....||||+++ +.....+...+|||.|+..|+..|+.. ..+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46689999997 444333333589999999999999752 257999 9988
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.65 E-value=1.2e-05 Score=90.86 Aligned_cols=53 Identities=21% Similarity=0.510 Sum_probs=39.6
Q ss_pred CCcCCCccccccccccCCC-ce---eecCCCCcCChhhHHHHHhcC-----------CCCCCCCcCcc
Q 000963 1113 KGLETNCPICCDFLFTSSA-TV---RALPCGHFMHSDCFQAYTCSH-----------YICPICSKSLG 1165 (1208)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~-~v---~~LpCGH~fH~~Ci~~~~~~~-----------~~CPiCrksl~ 1165 (1208)
......|+||++++.++.+ |. .-.+|||.||..|+.+|+++. ..||.|++.+.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3457789999998655232 21 235899999999999998642 46999999665
No 70
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=2.7e-05 Score=72.80 Aligned_cols=46 Identities=28% Similarity=0.528 Sum_probs=36.4
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhc------CCCCCC--CCcC
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS------HYICPI--CSKS 1163 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~------~~~CPi--Crks 1163 (1208)
.+..||||++. |. +||+...|||.|++.||..|+.. .++||+ |++.
T Consensus 6 ~~~~CPI~~~~-~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEE-MK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSB-CS--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCch-hc--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 35789999987 43 36663359999999999999865 369999 9966
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.54 E-value=1.3e-05 Score=72.93 Aligned_cols=45 Identities=24% Similarity=0.680 Sum_probs=36.2
Q ss_pred CCCccccccccccCCCceeecCCCCc-CChhhHHHHHhcCCCCCCCCcCccchh
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMA 1168 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~~~~~~~~CPiCrksl~~m~ 1168 (1208)
+..|+||++.. ..++.+||||. |+..|+..| ..||+||..+....
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence 56899999862 23567899999 999999766 39999999887643
No 72
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.48 E-value=6.5e-05 Score=78.54 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=37.8
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcC-CCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~-~~CPiCrksl~~ 1166 (1208)
+..||||++.|. +||+ +||||.|+..||..|+..+ .+||+|+..+..
T Consensus 106 ~f~CPI~~elm~---DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKISFELMR---EPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTTTCSBCS---SEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hhcccCccccCC---CCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 457999998743 3555 6999999999999999763 469999998753
No 73
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.47 E-value=7.2e-05 Score=64.77 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=37.6
Q ss_pred cCCcCCCccccccccccCCCceeecCCC--C---cCChhhHHHHHhc--CCCCCCCCcCc
Q 000963 1112 EKGLETNCPICCDFLFTSSATVRALPCG--H---FMHSDCFQAYTCS--HYICPICSKSL 1164 (1208)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~~v~~LpCG--H---~fH~~Ci~~~~~~--~~~CPiCrksl 1164 (1208)
|......|.||++. ...+. ++||. | ++|..|+..|+.. +.+||+|+..+
T Consensus 2 e~~~~~~CrIC~~~---~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 2 EDEDVPVCWICNEE---LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TTCSCCEETTTTEE---CSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCEeEEeecC---CCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 45567889999987 22333 58865 4 9999999999864 67899999765
No 74
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.43 E-value=4.1e-05 Score=84.12 Aligned_cols=48 Identities=31% Similarity=0.646 Sum_probs=40.2
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcC--CCCCC--CCcCcc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPI--CSKSLG 1165 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~--~~CPi--Crksl~ 1165 (1208)
.+..||||+++| ..||+...|||.|++.||..|+..+ .+||+ |++.+.
T Consensus 180 ~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 467899999984 4578877999999999999998753 57999 999764
No 75
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.13 E-value=0.0001 Score=84.42 Aligned_cols=43 Identities=33% Similarity=0.829 Sum_probs=35.5
Q ss_pred CCCccccccccccCCCceeecCCCCc-CChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
+..||||++.+. ..+.+||||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 578999999732 2456799999 999999877 789999998764
No 76
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.93 E-value=0.00031 Score=60.94 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=39.4
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
+...||||++.|- +||...+|||.|-+.||.+|+..+.+||++++.+..
T Consensus 2 ~~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 2 SHMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp --CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred CeEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 3467999999744 356544999999999999999888889999987753
No 77
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=96.39 E-value=0.018 Score=57.16 Aligned_cols=146 Identities=23% Similarity=0.282 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhhhhHHHHHHhhhh
Q 000963 44 ILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHE 123 (1208)
Q Consensus 44 i~~~~~~HkAlR~eL~~l~~~a~~~~~~~gd~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaLd~Rv~~v~~~~~~EH~ 123 (1208)
+|+|.+=|--+..-.++--.-.-..+- .+..+++.|..-+..--.-++.|-+-||+.|.-.|..|-..|..- .-|.
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tnF--s~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nv--Hsdn 83 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTNF--SNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNV--HSDN 83 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCCT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSC--SCCT
T ss_pred cceeeccHHHHHHHHHHHHHHHhhccC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecc--cCcc
Confidence 567777776555544444333333343 566677777777766667789999999999999999985222111 1233
Q ss_pred hHHHHHHHHHHHHHhhhcCc-h--hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhcCCHHHHHHHHHHHhc
Q 000963 124 GESVLFDQLFELLNSSMRNE-E--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1208)
Q Consensus 124 ~~~~lf~~L~~~l~~~~~~~-~--~~~~eLa~~l~~l~~~l~qHm~~EE~qv~PLl~~~fS~~E~a~L~~~~i~ 194 (1208)
...+.+.-+..++..- .+. + .+..+|-..+.++-.....||..||+.-=|+|.++||.+|+.+|-.+-|+
T Consensus 84 kLsemL~L~~kG~~~v-K~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi~ 156 (160)
T 3u9j_A 84 KLSEMLSLFEKGLKNV-KNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIA 156 (160)
T ss_dssp THHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhc-chHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3444455555555443 221 2 56677888888888899999999999999999999999999998776553
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.07 E-value=0.0025 Score=60.45 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=39.0
Q ss_pred CccccccccccCCCceeecCCCCcCChhhHHHHHhc-CCCCCCCCcCccchhH
Q 000963 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGDMAV 1169 (1208)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~-~~~CPiCrksl~~m~~ 1169 (1208)
-|++|--++ ....+.+||+|.|+.+|+..|.+. ..+||.|+..+.+.+.
T Consensus 3 fC~~C~~Pi---~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPI---KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBC---SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCe---EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 588887553 234567899999999999999854 6789999999987654
No 79
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.44 E-value=0.019 Score=62.57 Aligned_cols=45 Identities=31% Similarity=0.634 Sum_probs=32.7
Q ss_pred CCccccccccccCCCceeecCCCCcCChhhHHHHHhcC--CCCCCCCcCc
Q 000963 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPICSKSL 1164 (1208)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~--~~CPiCrksl 1164 (1208)
..|.||.+-+.. + .+-..|+|.||..|+..|++.+ .+||.|+..-
T Consensus 181 ~~C~iC~~iv~~-g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 181 KICNICHSLLIQ-G--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CBCTTTCSBCSS-C--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CcCcchhhHHhC-C--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 457777765442 2 2323599999999999998764 5899999843
No 80
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=93.74 E-value=1.1 Score=44.55 Aligned_cols=144 Identities=12% Similarity=0.143 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh-hhHH--hHHHHH
Q 000963 294 IDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL-SFAQ--EHAEEE 370 (1208)
Q Consensus 294 id~l~~~HkALRrEL~~L~~~a~~i~~~gd~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~-~me~--EH~~ie 370 (1208)
+|.+..=|--++.-...--+-+.... -.+-.++..|..-+..--..++.|-.-|++.|--.|.+|- +.-. -|....
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tn-Fs~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nvHsdnkLs 86 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTN-FSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLS 86 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSCSCCTTHH
T ss_pred cceeeccHHHHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecccCcchHH
Confidence 45666667666555555555555443 2233356555555544444567799999999999999885 1100 111222
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHhHh
Q 000963 371 IQFDKLRCLIESIQSAGANSS-TAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSL 442 (1208)
Q Consensus 371 ~l~e~l~~ll~~l~~~~~~~~-~~~~~~eLa~~le~L~~~L~~Hl~~EE~qvfPLl~~~fS~eEq~eL~~~~l 442 (1208)
..+.-|...+... . +.. ...+..+|...+++.......||..||++-=||+.++||.+|...|-.+-+
T Consensus 87 emL~L~~kG~~~v---K-~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi 155 (160)
T 3u9j_A 87 EMLSLFEKGLKNV---K-NEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVI 155 (160)
T ss_dssp HHHHHHHHHHHHC---C-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc---c-hHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 2233333333221 0 111 135567888888999999999999999999999999999999998866544
No 81
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.93 E-value=0.079 Score=49.61 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=37.4
Q ss_pred CCCccccccccccCCCceeecCCC-CcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCG-H~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
..||-.|... ... .+.|. |+++..|+.-+++.+.+||||++.+..
T Consensus 28 ~~nCKsCWf~---~k~---LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFE---NKG---LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSC---CSS---EEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cccChhhccc---cCC---eeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 5789999853 332 45786 999999999999999999999998874
No 82
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=80.29 E-value=0.2 Score=45.99 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=42.3
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccchhHhhhhcHHHHhhcCCcHHhhccccEEE
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEYRDRCQVKI 1195 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m~~~~~~lD~~i~~~pmP~ey~~~~~~Il 1195 (1208)
+..||+|...|-.... ++.+..|-..+.... .||-|+.++.... +=.-++.+
T Consensus 2 ~~~CP~C~~~l~~~~~--------~~~C~~C~~~~~~~a-fCPeCgq~Le~lk-------------------ACGA~~yF 53 (81)
T 2jrp_A 2 EITCPVCHHALERNGD--------TAHCETCAKDFSLQA-LCPDCRQPLQVLK-------------------ACGAVDYF 53 (81)
T ss_dssp CCCCSSSCSCCEECSS--------EEECTTTCCEEEEEE-ECSSSCSCCCEEE-------------------ETTEEEEC
T ss_pred CCCCCCCCCccccCCC--------ceECccccccCCCcc-cCcchhhHHHHHH-------------------hcCCcCee
Confidence 4789999987654322 444666766665544 8999999886521 11225889
Q ss_pred cCCCCCcCccc
Q 000963 1196 LHIFKLLGSFK 1206 (1208)
Q Consensus 1196 Cndc~~~~~~~ 1206 (1208)
||.|+.+-|-+
T Consensus 54 C~~C~~LiSkk 64 (81)
T 2jrp_A 54 CQNGHGLISKK 64 (81)
T ss_dssp CTTTTCCCCTT
T ss_pred eccCCCEeecc
Confidence 99999987643
No 83
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=70.97 E-value=1.4 Score=40.45 Aligned_cols=49 Identities=20% Similarity=0.629 Sum_probs=30.8
Q ss_pred ccccccC-------CcccCcccccccCCCCcccccccccccccccccccCCCCCCCCCCCCcccceEecCccc
Q 000963 999 LRAACCG-------KLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK 1064 (1208)
Q Consensus 999 l~~~cC~-------k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~~a~y~C~~C~ 1064 (1208)
+.||.|+ ++|.|..|+.. + .....|..|+.+..+ |.. | |. +.|||..|+
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~-----~----~~~afCPeCgq~Le~---lkA--C-GA--~~yFC~~C~ 58 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKD-----F----SLQALCPDCRQPLQV---LKA--C-GA--VDYFCQNGH 58 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCE-----E----EEEEECSSSCSCCCE---EEE--T-TE--EEECCTTTT
T ss_pred CCCCCCCCccccCCCceECcccccc-----C----CCcccCcchhhHHHH---HHh--c-CC--cCeeeccCC
Confidence 3466664 35567777653 1 234488888877665 554 4 43 389999886
No 84
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=69.26 E-value=2.3 Score=39.40 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=25.2
Q ss_pred CCCccccccccccCCCceee-cCCCCcCChhhHHHH
Q 000963 1116 ETNCPICCDFLFTSSATVRA-LPCGHFMHSDCFQAY 1150 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~-LpCGH~fH~~Ci~~~ 1150 (1208)
+..|+||.+..+. .++.. +.|||.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 5689999975332 34444 999999999999983
No 85
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.88 E-value=2.4 Score=40.64 Aligned_cols=72 Identities=21% Similarity=0.456 Sum_probs=40.0
Q ss_pred CccccccCCccccc-----ccc--c------cccccccCCcCCCccccccccccCCCceeecCCCCcCChhhHHHHHh--
Q 000963 1088 GVDFFHCMTCNCCL-----AKK--L------VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC-- 1152 (1208)
Q Consensus 1088 ~~~~fHC~~C~~C~-----~~~--l------~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~-- 1152 (1208)
+++...|..|+.-+ .+. + ..=.|.+= ..|.||.+.-.+...-+.--.|...||..|+++-+.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~ 99 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRM 99 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSC
T ss_pred chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCC
Confidence 45777888886554 221 0 11223221 158888753111122111137889999999976432
Q ss_pred --cCCCCCCCCc
Q 000963 1153 --SHYICPICSK 1162 (1208)
Q Consensus 1153 --~~~~CPiCrk 1162 (1208)
....||.|+.
T Consensus 100 P~~~W~C~~C~~ 111 (112)
T 3v43_A 100 PKGMWICQICRP 111 (112)
T ss_dssp CSSCCCCTTTSC
T ss_pred CCCCeECCCCCC
Confidence 3467999975
No 86
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=62.45 E-value=1.9 Score=40.75 Aligned_cols=49 Identities=24% Similarity=0.592 Sum_probs=32.8
Q ss_pred ccccccCC-------cccCcccccccCCCCcccccccccccccccccccCCCCCCCCCCCCcccceEecCccc
Q 000963 999 LRAACCGK-------LFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK 1064 (1208)
Q Consensus 999 l~~~cC~k-------~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~~a~y~C~~C~ 1064 (1208)
+.||.|+. +|.|..|+.. -...-.|..|+.+-.+-+.| | -+.|||..|+
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~LevLkAC------G--AvdYFC~~ch 88 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQVLKAC------G--AVDYFCQHGH 88 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCEEEEET------T--EEEEEETTTT
T ss_pred ccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHHHHHHh------c--CcchhhccCC
Confidence 56777753 5567777653 23477888888776654544 3 4689999997
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=60.97 E-value=2.7 Score=40.07 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=26.7
Q ss_pred CccccccccccCCCceeecCCCCcCChhhHHHHHh----cCCCCCCCCc
Q 000963 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSK 1162 (1208)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~----~~~~CPiCrk 1162 (1208)
.|.||... -....-+.--.|...||..|+++-+. ....||.|..
T Consensus 56 ~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQS-GEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCC-SCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCcc-CCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 47777754 11111122238889999999986433 3467887764
No 88
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.20 E-value=1.3 Score=42.69 Aligned_cols=84 Identities=20% Similarity=0.487 Sum_probs=47.7
Q ss_pred CCCCccccCC------CCCccccccCCccccc-----cccc--------cccccccCCcCCCccccccccccCCCceee-
Q 000963 1076 PFCNLCRVGR------GLGVDFFHCMTCNCCL-----AKKL--------VDHKCREKGLETNCPICCDFLFTSSATVRA- 1135 (1208)
Q Consensus 1076 ~~CgiCRvG~------gl~~~~fHC~~C~~C~-----~~~l--------~~H~C~e~~~~~~CpICle~lf~s~~~v~~- 1135 (1208)
+.|.||.-|. |-+++...|+.|+.-+ .... ..=.|.+= ..|.||... - ....+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~-~-~~~~ll~C 76 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTS-E-NDDQLLFC 76 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCC-T-TTTTEEEC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCccccc-C-CCCceEEc
Confidence 4566776543 2335788888887543 3321 12223221 258888764 1 1222222
Q ss_pred cCCCCcCChhhHHHHHh----cCCCCCCCCcCc
Q 000963 1136 LPCGHFMHSDCFQAYTC----SHYICPICSKSL 1164 (1208)
Q Consensus 1136 LpCGH~fH~~Ci~~~~~----~~~~CPiCrksl 1164 (1208)
-.|...||..|+.+=+. ....||.|...+
T Consensus 77 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 77 DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp SSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCccccccccCCCccCCCCCCeECccccchh
Confidence 37889999999985332 245688886543
No 89
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=55.09 E-value=3.2 Score=41.84 Aligned_cols=15 Identities=40% Similarity=0.846 Sum_probs=10.3
Q ss_pred CCCCCCCCcCccchh
Q 000963 1154 HYICPICSKSLGDMA 1168 (1208)
Q Consensus 1154 ~~~CPiCrksl~~m~ 1168 (1208)
.|.||+|.+......
T Consensus 133 ~~~C~~C~~~f~~~~ 147 (190)
T 2i13_A 133 PYKCPECGKSFSRED 147 (190)
T ss_dssp CEECTTTCCEESCHH
T ss_pred CeECCCCCcccCCHH
Confidence 467888887766544
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=52.33 E-value=14 Score=37.18 Aligned_cols=89 Identities=15% Similarity=0.337 Sum_probs=49.5
Q ss_pred CccccCCCCCccccCC----CCCccccccCCccccccccc-cccccccCCcCCCccccccccccCCCceeecCCCCcCCh
Q 000963 1070 RVVYHCPFCNLCRVGR----GLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHS 1144 (1208)
Q Consensus 1070 k~~yHC~~CgiCRvG~----gl~~~~fHC~~C~~C~~~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~ 1144 (1208)
...++|.-||.=.... -....+|+-.-|..|...-+ ..-.-.+++.+..|.||.+. .+-+--=.|--.||.
T Consensus 12 ~~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~ 87 (142)
T 2lbm_A 12 HGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCK 87 (142)
T ss_dssp CCCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCC----SSEEECSSSCCEEEH
T ss_pred cCCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCC----CcEEeCCCCCCeeeH
Confidence 4556677776533100 00012344444444443222 11222456778999999874 331111278899999
Q ss_pred hhHHHHH-----------hcCCCCCCCCc
Q 000963 1145 DCFQAYT-----------CSHYICPICSK 1162 (1208)
Q Consensus 1145 ~Ci~~~~-----------~~~~~CPiCrk 1162 (1208)
.|+..-+ ...-.||+|..
T Consensus 88 ~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 88 KCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp HHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred hhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 9999643 13467999985
No 91
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=52.07 E-value=7.1 Score=32.26 Aligned_cols=28 Identities=43% Similarity=0.847 Sum_probs=16.6
Q ss_pred cceEecCccc-CcCCC----CccccCCCCCccc
Q 000963 1055 MAKYYCGICK-FFDDE----RVVYHCPFCNLCR 1082 (1208)
Q Consensus 1055 ~a~y~C~~C~-l~d~~----k~~yHC~~CgiCR 1082 (1208)
|+-|-|-.|. -|+++ -+--+||+||.=-
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 4567777773 46655 4567899999643
No 92
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=51.37 E-value=3.6 Score=41.51 Aligned_cols=25 Identities=24% Similarity=0.846 Sum_probs=18.8
Q ss_pred CCCccccCCCCCccccccCCcccccc
Q 000963 1077 FCNLCRVGRGLGVDFFHCMTCNCCLA 1102 (1208)
Q Consensus 1077 ~CgiCRvG~gl~~~~fHC~~C~~C~~ 1102 (1208)
+|+||+.-. ..++.|||+.||+|--
T Consensus 85 ~C~~C~l~d-~~k~~yHC~~CgiCR~ 109 (143)
T 2dkt_A 85 YCSICHLFD-KDKRQYHCESCGICRI 109 (143)
T ss_dssp ECSSSCCEE-CSSSEEEETTTTEEEE
T ss_pred Eeceeeccc-CCCceecCCCCCceec
Confidence 455777652 3568999999999974
No 93
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=49.06 E-value=2.6 Score=40.35 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCccccccccccCCCcee-ecCCCCcCChhhHHHHHh--------cCCCCCCCCc
Q 000963 1117 TNCPICCDFLFTSSATVR-ALPCGHFMHSDCFQAYTC--------SHYICPICSK 1162 (1208)
Q Consensus 1117 ~~CpICle~lf~s~~~v~-~LpCGH~fH~~Ci~~~~~--------~~~~CPiCrk 1162 (1208)
..|+.|.+. ......++ ---|...+|..|...+.. ..|.||.|+.
T Consensus 60 ~~c~~c~~~-~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 60 GEVDQNEET-QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CCBCCHHHH-CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred Ccccccccc-cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 446666543 22222222 247899999999875432 1377999975
No 94
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.22 E-value=10 Score=32.91 Aligned_cols=43 Identities=21% Similarity=0.556 Sum_probs=31.3
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
....|+.|.+.++.....+..+ |..+|..|| +|-.|++.+.+-
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSN--GELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEET--TEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeC--ccEeccccC--------eECCCCCCCCCC
Confidence 4578999999877544433333 788999876 688999988754
No 95
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=44.80 E-value=1e+02 Score=35.46 Aligned_cols=79 Identities=10% Similarity=0.174 Sum_probs=46.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhhhhHHHH-----------HHh-hhhhHHHHHHHHHHHHHhhh
Q 000963 73 GGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIART-----------YSL-EHEGESVLFDQLFELLNSSM 140 (1208)
Q Consensus 73 gd~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaLd~Rv~~v~~~-----------~~~-EH~~~~~lf~~L~~~l~~~~ 140 (1208)
-|...++++..+++.+...+| +=..--|+++..-|+..... +.. .-..-+.+++.|...|..+.
T Consensus 45 ~~~~~~~~~q~~le~~~~~lr----~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~ 120 (369)
T 3rfy_A 45 IDNKAIREVQKPLEDITDSLK----IAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDML 120 (369)
T ss_dssp CCCHHHHHHHHHHHTHHHHTT----SCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHhc----cccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 466688888888877766554 11122388887666332222 222 22334568888888888885
Q ss_pred cCc-----h---hHHHHHHHHHH
Q 000963 141 RNE-----E---SYRRELASCTG 155 (1208)
Q Consensus 141 ~~~-----~---~~~~eLa~~l~ 155 (1208)
... + ..++++-..|+
T Consensus 121 ~~~~~~d~~~~~~~~~~~l~~v~ 143 (369)
T 3rfy_A 121 KIVEDRKRDAVAPKQKEILKYVG 143 (369)
T ss_dssp CCCSSCCCSSSGGGHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHH
Confidence 432 2 44566666666
No 96
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=44.28 E-value=21 Score=44.96 Aligned_cols=84 Identities=25% Similarity=0.427 Sum_probs=51.9
Q ss_pred ccccccCCcCCCccccccccccCC------CceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccchhHhhhh-------
Q 000963 1107 DHKCREKGLETNCPICCDFLFTSS------ATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGM------- 1173 (1208)
Q Consensus 1107 ~H~C~e~~~~~~CpICle~lf~s~------~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m~~~~~~------- 1173 (1208)
+.+|....-...||+|.-.+-+.. ..-.-+.||-.||..||+.|.+.+ |+-.+--..|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~~-------~~~~~~~~~w~~~~~~~~~ 76 (776)
T 4gut_A 4 SRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSH-------KDGYDKYTTWKKIWTSNGK 76 (776)
T ss_dssp BSSBSSTTCCCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHSTT-------STTHHHHHHHHHHHHHTCC
T ss_pred ccccccCCCcccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhccC-------cchhHHHHHHHHHHHhCCc
Confidence 456666666788899865542111 112348999999999999887652 211122223433
Q ss_pred ----cHHHHhhcCCcHHhhccccEEEcC--CCCCcCc
Q 000963 1174 ----LDALLASEQLPEEYRDRCQVKILH--IFKLLGS 1204 (1208)
Q Consensus 1174 ----lD~~i~~~pmP~ey~~~~~~IlCn--dc~~~~~ 1204 (1208)
+...++++.+| =++-|+ +|++-..
T Consensus 77 ~~~~~~~~~~~~~l~-------~~~~c~~~~c~~~~~ 106 (776)
T 4gut_A 77 TEPSPKAFMADQQLP-------YWVQCTKPECRKWRQ 106 (776)
T ss_dssp SCCCHHHHHHHHTSC-------CEEECCCTTTCCEEE
T ss_pred cchhHHHHHHhccCc-------HhhhcCcccccchhh
Confidence 34566677776 267899 9998543
No 97
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=43.82 E-value=17 Score=33.58 Aligned_cols=34 Identities=18% Similarity=0.523 Sum_probs=23.4
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHH
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAY 1150 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~ 1150 (1208)
.+..|+||-. |+...-..-=-||-.||..|+.+.
T Consensus 14 ~D~~C~VC~~--~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV--WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC--CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccc--ccccceeccccccccccHhhcccc
Confidence 4789999974 454331111136899999999985
No 98
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.07 E-value=12 Score=32.21 Aligned_cols=40 Identities=28% Similarity=0.625 Sum_probs=29.1
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
...|+.|.+.|......+.. =|..+|..|| +|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 45799999887754333333 3789999876 6889999884
No 99
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.68 E-value=14 Score=31.76 Aligned_cols=41 Identities=27% Similarity=0.491 Sum_probs=30.1
Q ss_pred CCCcccccccccc--CCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFT--SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~--s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
...|+.|.+.|.. ....+. .-|..+|..|| +|-.|++++.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCCC
Confidence 4679999998775 333233 35899999887 78899998863
No 100
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.27 E-value=11 Score=32.36 Aligned_cols=42 Identities=24% Similarity=0.647 Sum_probs=30.1
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
...|+.|.+.|......+.. -|..+|..|| +|-.|++.+.+-
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 35799999987754333333 3788998876 788999988653
No 101
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.77 E-value=9.3 Score=32.79 Aligned_cols=41 Identities=27% Similarity=0.710 Sum_probs=29.7
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
...|+.|.+.|......+ ..-|..+|..|| +|-.|++.+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL--EYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE--CSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE--EECccccCcccC--------eECCCCCcCCC
Confidence 457999999876543322 344889999887 68899988765
No 102
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=39.49 E-value=42 Score=31.37 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=38.7
Q ss_pred ccCCcCCCccccccccccCCCceee---cCCCCcCChhhHHHHHh-cCCCCCCCCcCcc
Q 000963 1111 REKGLETNCPICCDFLFTSSATVRA---LPCGHFMHSDCFQAYTC-SHYICPICSKSLG 1165 (1208)
Q Consensus 1111 ~e~~~~~~CpICle~lf~s~~~v~~---LpCGH~fH~~Ci~~~~~-~~~~CPiCrksl~ 1165 (1208)
........|.||.|++=...+.-.+ --|+-..++.|++--.+ .+..||-|+..+-
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4445568999999996433333222 36788999999976554 5788999997654
No 103
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=39.36 E-value=13 Score=32.37 Aligned_cols=41 Identities=29% Similarity=0.559 Sum_probs=30.1
Q ss_pred CCCcccccccccc---CCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFT---SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~---s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
...|+.|.+.|.. ....+..+ |..+|..|| +|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEET--TEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEEC--cceeCcccC--------EehhcCCCCCC
Confidence 4579999998775 33444444 788999886 68899998864
No 104
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.29 E-value=17 Score=32.02 Aligned_cols=42 Identities=26% Similarity=0.644 Sum_probs=30.0
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
...|+.|.+.|......+.. =|..+|..|| +|-.|++.+..-
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 45799999887644333333 3889998877 788999988653
No 105
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=37.66 E-value=14 Score=31.30 Aligned_cols=14 Identities=43% Similarity=1.215 Sum_probs=10.8
Q ss_pred cceEecCcccC-cCC
Q 000963 1055 MAKYYCGICKF-FDD 1068 (1208)
Q Consensus 1055 ~a~y~C~~C~l-~d~ 1068 (1208)
|.+|-|.+|.+ ||.
T Consensus 1 m~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDP 15 (54)
T ss_dssp CCCEEETTTCCEECT
T ss_pred CCceECCCCCeEECC
Confidence 57899999986 554
No 106
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.18 E-value=14 Score=32.33 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=30.0
Q ss_pred CCCcccccccccc--CCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFT--SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~--s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
...|+.|.+.|.. ....+.. -|..+|.+|| +|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCCC
Confidence 3579999998775 3343433 4788999887 78899998863
No 107
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=35.66 E-value=17 Score=37.93 Aligned_cols=49 Identities=20% Similarity=0.561 Sum_probs=33.4
Q ss_pred CCccccccccccCCCc---e-eecCCCCcCChhhHHHH------Hh-----cCCCCCCCCcCccc
Q 000963 1117 TNCPICCDFLFTSSAT---V-RALPCGHFMHSDCFQAY------TC-----SHYICPICSKSLGD 1166 (1208)
Q Consensus 1117 ~~CpICle~lf~s~~~---v-~~LpCGH~fH~~Ci~~~------~~-----~~~~CPiCrksl~~ 1166 (1208)
..||||... +...+. . .--.|..-||..|..-- +. ..|.||.|+..-+.
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 569999875 544431 2 22378899999998531 11 27999999997764
No 108
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=35.64 E-value=3e+02 Score=26.47 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccc----hhhHHHhhhhHHHHHHhhh
Q 000963 47 FLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVI----FPALDIRVKNIARTYSLEH 122 (1208)
Q Consensus 47 ~~~~HkAlR~eL~~l~~~a~~~~~~~gd~~~~~~l~~r~~~L~~~~~~H~~aEDevI----~PaLd~Rv~~v~~~~~~EH 122 (1208)
+=-=||-|=.-+..|..+ +.. ++ ...+..-+.+|.+.-.+|=..|..+. +|.++.. .
T Consensus 19 ID~qHk~L~~lin~l~~a---~~~--~~---~~~i~~~l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H-----------~ 79 (136)
T 3agt_A 19 IDTQHKRLVDYINDLYRA---ARR--RD---MDKAREVFDALKNYAVEHFGYEERLFADYAYPEATRH-----------K 79 (136)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHT--TC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHH---HHc--Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH-----------H
Confidence 334577666666655433 333 33 45667778888999999999888753 5544332 3
Q ss_pred hhHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHh
Q 000963 123 EGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLI 177 (1208)
Q Consensus 123 ~~~~~lf~~L~~~l~~~~~~~~~~~~eLa~~l~~l~~~l~qHm~~EE~qv~PLl~ 177 (1208)
+.|+..++.+......+...+..+..+|..++ ..-|..|...+=...-+.+.
T Consensus 80 ~~H~~f~~~v~~l~~~~~~g~~~~~~~l~~~L---~~Wl~~HI~~~D~~~~~~l~ 131 (136)
T 3agt_A 80 EIHRRFVETVLKWEKQLAAGDPEVVMTTLRGL---VDWLVNHIMKEDKKYEAYLR 131 (136)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH---HHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH---HHHHHHHhHHHhHHHHHHHH
Confidence 45666777777777777554434455555554 57888999888777666553
No 109
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=34.08 E-value=22 Score=29.82 Aligned_cols=13 Identities=38% Similarity=1.214 Sum_probs=9.5
Q ss_pred cceEecCcccC-cC
Q 000963 1055 MAKYYCGICKF-FD 1067 (1208)
Q Consensus 1055 ~a~y~C~~C~l-~d 1067 (1208)
|.+|.|.+|.+ ||
T Consensus 1 m~~y~C~~CGyvYd 14 (52)
T 1e8j_A 1 MDIYVCTVCGYEYD 14 (52)
T ss_dssp CCCEECSSSCCCCC
T ss_pred CCcEEeCCCCeEEc
Confidence 56788888875 44
No 110
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.69 E-value=19 Score=30.61 Aligned_cols=14 Identities=43% Similarity=1.201 Sum_probs=10.1
Q ss_pred cceEecCcccC-cCC
Q 000963 1055 MAKYYCGICKF-FDD 1068 (1208)
Q Consensus 1055 ~a~y~C~~C~l-~d~ 1068 (1208)
|.+|.|.+|.+ ||.
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 56788988875 454
No 111
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.20 E-value=25 Score=30.94 Aligned_cols=41 Identities=27% Similarity=0.572 Sum_probs=28.8
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
...|+.|...|......+. .=|..+|..|| +|-.|++++.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF--YEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC--CSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEE--eCCccccccCC--------eecCCCCccCC
Confidence 3579999988763333222 24889999886 68899998763
No 112
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.29 E-value=7.1 Score=33.48 Aligned_cols=47 Identities=21% Similarity=0.591 Sum_probs=31.5
Q ss_pred cCCCcccccccccc-CCCceeecCCCCcCChhhHHHHHh-----cCCCCCCCCc
Q 000963 1115 LETNCPICCDFLFT-SSATVRALPCGHFMHSDCFQAYTC-----SHYICPICSK 1162 (1208)
Q Consensus 1115 ~~~~CpICle~lf~-s~~~v~~LpCGH~fH~~Ci~~~~~-----~~~~CPiCrk 1162 (1208)
....||||... +. ...-|.--.|..-||..|+.--.. ..|.||.|+.
T Consensus 5 e~~~C~~C~~~-~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGES-YAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCC-CCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCc-cCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 45679999876 32 222223347888999999864321 4689999975
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=31.86 E-value=26 Score=34.75 Aligned_cols=65 Identities=17% Similarity=0.462 Sum_probs=39.5
Q ss_pred cCCccccccccc-cccccccCCcCCCccccccccccCCCceeecCCCCcCChhhHHHHH-----------hcCCCCCCCC
Q 000963 1094 CMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-----------CSHYICPICS 1161 (1208)
Q Consensus 1094 C~~C~~C~~~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~-----------~~~~~CPiCr 1161 (1208)
-..|..|...-+ ..-.-.++..+..|.||.+- .+-+--=.|-..||..|+..-+ ...-.|++|.
T Consensus 34 v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 34 VLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp CEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred ceeCHhHHhhhhccccccCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 444555543222 23333456778889999863 2211112678999999999641 2347899997
Q ss_pred c
Q 000963 1162 K 1162 (1208)
Q Consensus 1162 k 1162 (1208)
-
T Consensus 110 ~ 110 (129)
T 3ql9_A 110 P 110 (129)
T ss_dssp C
T ss_pred C
Confidence 5
No 114
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.73 E-value=19 Score=29.60 Aligned_cols=26 Identities=35% Similarity=1.080 Sum_probs=18.3
Q ss_pred cceEecCcccC-cCC---------C-CccccCCCCCc
Q 000963 1055 MAKYYCGICKF-FDD---------E-RVVYHCPFCNL 1080 (1208)
Q Consensus 1055 ~a~y~C~~C~l-~d~---------~-k~~yHC~~Cgi 1080 (1208)
|.+|-|.+|.+ ||. + .+-|.||.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 77899999986 552 2 34577887773
No 115
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=31.41 E-value=32 Score=39.87 Aligned_cols=85 Identities=22% Similarity=0.473 Sum_probs=54.0
Q ss_pred ccCCCCCccccCCCCCccccccCCccccccccc-cccccccCCcCCCccccccccccCCCceeec--CCCCcCChhhHHH
Q 000963 1073 YHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRAL--PCGHFMHSDCFQA 1149 (1208)
Q Consensus 1073 yHC~~CgiCRvG~gl~~~~fHC~~C~~C~~~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~L--pCGH~fH~~Ci~~ 1149 (1208)
++|-.||--.+- .-...|...-|..|...-+ ......+++.+.-|-||.+. .+-+.-= .|...||..|++.
T Consensus 51 ~~C~~CG~~~~~--~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~ 124 (386)
T 2pv0_B 51 DICICCGSLQVH--TQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDS 124 (386)
T ss_dssp GSBTTTCCSCCC--SBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHH
T ss_pred ceeCCCCCcCcc--ccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHH
Confidence 455556543221 1124555666777765444 56666788889999999974 3322223 7889999999998
Q ss_pred HHh----------cCCCCCCCCcC
Q 000963 1150 YTC----------SHYICPICSKS 1163 (1208)
Q Consensus 1150 ~~~----------~~~~CPiCrks 1163 (1208)
.+. ..-.|=+|.-.
T Consensus 125 n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 125 LVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp HTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred hcChhHHHHhhccCCceEEEcCCc
Confidence 762 23567777754
No 116
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.27 E-value=9.3 Score=36.12 Aligned_cols=24 Identities=21% Similarity=0.563 Sum_probs=17.2
Q ss_pred cccccCCccccccccccccccccCCcCCCccccccc
Q 000963 1090 DFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDF 1125 (1208)
Q Consensus 1090 ~~fHC~~C~~C~~~~l~~H~C~e~~~~~~CpICle~ 1125 (1208)
.+|||..|+.-+.+ ...||-|.+.
T Consensus 47 ~~~hC~~C~~~f~~------------~a~CPdC~q~ 70 (101)
T 2jne_A 47 GHARCRSCGEFIEM------------KALCPDCHQP 70 (101)
T ss_dssp TEEEETTTCCEEEE------------EEECTTTCSB
T ss_pred CEEECccccchhhc------------cccCcchhhH
Confidence 36778877775554 4689999876
No 117
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.82 E-value=24 Score=35.59 Aligned_cols=40 Identities=25% Similarity=0.554 Sum_probs=27.8
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
...|..|.+.|.... .+ +-.-|..+|..|| +|-.|++.+.
T Consensus 65 ~~~C~~C~~~I~~~~-~v-~~a~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQ-VV-RRAQDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp SCBCTTTCCBCCTTS-EE-EEETTEEEEGGGC--------BCTTTCCBCC
T ss_pred cccccccccccCCCc-EE-EEcCCceEeeCCC--------cCCCCCCCCC
Confidence 357888988765432 22 2234889999887 7889998875
No 118
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.51 E-value=25 Score=31.11 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=29.8
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
...|+.|.+.|.. ..+ ..-|..+|..|| +|-.|++.+...
T Consensus 15 ~~~C~~C~~~I~~--~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDE--QPL--IFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCS--CCC--CCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEecc--eEE--EECcceeCCCCC--------EeCCCCCccCCC
Confidence 4679999998772 223 345889999886 799999988753
No 119
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=29.77 E-value=18 Score=30.69 Aligned_cols=43 Identities=21% Similarity=0.565 Sum_probs=30.6
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
....|+.|...+......+.. =|..+|..|| +|-.|++++.+.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 346799999887654332233 3788999887 688999988764
No 120
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.63 E-value=14 Score=31.15 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=28.8
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
...|+.|.+.+. . +. +..-|..+|..|| +|-.|++++..
T Consensus 5 ~~~C~~C~~~I~-~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-G-RV--VNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-S-CE--ECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-c-eE--EEECccccccCcC--------EECCCCCCCCC
Confidence 457999999876 2 22 3345889999876 68899998864
No 121
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.57 E-value=22 Score=30.27 Aligned_cols=40 Identities=28% Similarity=0.828 Sum_probs=29.5
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
...|+.|.+.|.. ..+.. -|..+|.+|| +|-.|++.|.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIKA--MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEEE--TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEEE--CcccccccCC--------EeCCCCCcCCCC
Confidence 4579999988763 23333 3788999887 788999988764
No 122
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.41 E-value=15 Score=27.25 Aligned_cols=17 Identities=29% Similarity=0.727 Sum_probs=14.1
Q ss_pred CCCCCCCCcCccchhHh
Q 000963 1154 HYICPICSKSLGDMAVY 1170 (1208)
Q Consensus 1154 ~~~CPiCrksl~~m~~~ 1170 (1208)
.++||+|+..+.|+..+
T Consensus 3 k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CEECTTSSCEESSHHHH
T ss_pred cccCccccccCcChHHH
Confidence 46899999999987754
No 123
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=28.92 E-value=24 Score=32.28 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=4.8
Q ss_pred Cccccccccc
Q 000963 1118 NCPICCDFLF 1127 (1208)
Q Consensus 1118 ~CpICle~lf 1127 (1208)
.|+.|.+.|.
T Consensus 7 ~C~~C~~~I~ 16 (101)
T 2cup_A 7 GCVECRKPIG 16 (101)
T ss_dssp BCSSSCCBCC
T ss_pred cCcccCCccc
Confidence 4555555443
No 124
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.89 E-value=28 Score=30.58 Aligned_cols=38 Identities=21% Similarity=0.493 Sum_probs=27.6
Q ss_pred CCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
..|+.|.+.|.. ..+ ..-|..+|.+|| +|-.|++.+.+
T Consensus 16 ~~C~~C~~~I~~--~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMTG--PFM--VAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCCS--CCB--CCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcCc--eEE--EECCceeccccC--------CccCCCCccCC
Confidence 469999988772 223 344889999876 68899998864
No 125
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.74 E-value=23 Score=31.59 Aligned_cols=14 Identities=29% Similarity=0.964 Sum_probs=11.0
Q ss_pred ccceEecCcccC-cC
Q 000963 1054 SMAKYYCGICKF-FD 1067 (1208)
Q Consensus 1054 ~~a~y~C~~C~l-~d 1067 (1208)
.|.+|.|.+|.+ ||
T Consensus 4 ~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 4 DEGKYECEACGYIYE 18 (70)
T ss_dssp CSSCEEETTTCCEEC
T ss_pred CCceEEeCCCCEEEc
Confidence 578899999975 45
No 126
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=28.72 E-value=13 Score=32.91 Aligned_cols=48 Identities=21% Similarity=0.515 Sum_probs=31.2
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHh----cCCCCCCCCcCc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKSL 1164 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~----~~~~CPiCrksl 1164 (1208)
...|+||... .....-+.-=.|.-.||..|+..-.. ..+.||.|...+
T Consensus 18 ~~~C~~C~~~-~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKP-DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBC-CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCC-CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 4569999875 22212122237889999999975332 468899998644
No 127
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=28.12 E-value=26 Score=32.11 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=11.2
Q ss_pred ccceEecCcccC-cCC
Q 000963 1054 SMAKYYCGICKF-FDD 1068 (1208)
Q Consensus 1054 ~~a~y~C~~C~l-~d~ 1068 (1208)
.+.+|.|.+|.+ ||.
T Consensus 24 em~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCCEEEETTTCCEEET
T ss_pred CcceEEeCCCCEEEcC
Confidence 477899999975 554
No 128
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.94 E-value=5.6 Score=44.82 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCCccccccccccCCCceeecCC--C------CcCChhhHHHHHhcCCCCCCCCcCccchhHhhhhcHHHHhhcCCcHHh
Q 000963 1116 ETNCPICCDFLFTSSATVRALPC--G------HFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQLPEEY 1187 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpC--G------H~fH~~Ci~~~~~~~~~CPiCrksl~~m~~~~~~lD~~i~~~pmP~ey 1187 (1208)
...||||... ++..+=- | +..|.-|-..|-.....||.|..+ +--.||. +....-|++.
T Consensus 182 ~~~CPvCGs~------P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~--~~l~y~~-----~e~~~~~~~~ 248 (309)
T 2fiy_A 182 RTLCPACGSP------PMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES--KHLAYLS-----LEHDGQPAEK 248 (309)
T ss_dssp CSSCTTTCCC------EEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC--SCCEEEC-----CCC-CCCSTT
T ss_pred CCCCCCCCCc------CceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC--CCeeEEE-----ecCccccCCC
Q ss_pred hccccEEEcCCCC
Q 000963 1188 RDRCQVKILHIFK 1200 (1208)
Q Consensus 1188 ~~~~~~IlCndc~ 1200 (1208)
...++.+ |.+|+
T Consensus 249 ~~~r~e~-C~~C~ 260 (309)
T 2fiy_A 249 AVLRAET-CPSCQ 260 (309)
T ss_dssp CSEEEEE-ETTTT
T ss_pred cceEEEE-ccccc
No 129
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=27.72 E-value=23 Score=33.97 Aligned_cols=37 Identities=27% Similarity=0.611 Sum_probs=19.8
Q ss_pred CccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCc
Q 000963 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164 (1208)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl 1164 (1208)
.|+.|...|......+.. -|..+|..|| +|-.|++.|
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF--------~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLECF--------KCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTTC--------BCTTTCCBC
T ss_pred cccCCCCeecCCceEEEE--CCcccccccC--------ccccCCCCC
Confidence 466666665532222222 2666676665 455666665
No 130
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=27.45 E-value=13 Score=32.30 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=41.9
Q ss_pred CccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccchhHhhhhcHHHHhhcCC-c-HHhhccccEEE
Q 000963 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEQL-P-EEYRDRCQVKI 1195 (1208)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m~~~~~~lD~~i~~~pm-P-~ey~~~~~~Il 1195 (1208)
.|+.|.+.|... +.+..+ |..+|..|| +|..|++.+.+.. ++. . ...+. . +.|.... ...
T Consensus 2 ~C~~C~~~I~~~-~~v~a~--~~~~H~~CF--------~C~~C~~~L~~~~-~~~-~----~g~~yC~~~cy~~~f-~~~ 63 (76)
T 1iml_A 2 KCPKCDKEVYFA-ERVTSL--GKDWHRPCL--------KCEKCGKTLTSGG-HAE-H----EGKPYCNHPCYSAMF-GPK 63 (76)
T ss_dssp BCTTTSSBCCGG-GEEEET--TEEEETTTC--------BCTTTCCBCCTTT-EEE-E----TTEEEETTTHHHHHS-SCC
T ss_pred cCCCCCCEEECc-eEEEEC--CccccCCCC--------CccccCccCCCCc-eEC-c----CCeEeeCHHHHHHHh-Ccc
Confidence 488898886633 234444 889999876 6899999887642 222 1 12222 2 2454433 234
Q ss_pred cCCCCCcCcc
Q 000963 1196 LHIFKLLGSF 1205 (1208)
Q Consensus 1196 Cndc~~~~~~ 1205 (1208)
|.-|++....
T Consensus 64 C~~C~~~~~~ 73 (76)
T 1iml_A 64 GFGRGGAESH 73 (76)
T ss_dssp CSSCCCSSSC
T ss_pred CCCcCCceee
Confidence 8888765543
No 131
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=27.12 E-value=24 Score=26.28 Aligned_cols=29 Identities=28% Similarity=0.697 Sum_probs=20.1
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhH
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCF 1147 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci 1147 (1208)
...||.|....+.- +.+ ..=|..+|..||
T Consensus 3 ~~~C~~C~k~Vy~~-Ek~--~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPT-EKV--NCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGG-GCC--CSSSSCCCGGGC
T ss_pred CCcCCccCCEEecc-eeE--EECCeEecccCC
Confidence 45799998887654 323 334889999885
No 132
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.83 E-value=31 Score=30.68 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=31.1
Q ss_pred CcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
.....|+.|.+.|+.. +.+. .-|..+|..|| +|-.|++.+...
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccc-eEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 3456899999987643 2233 34889999886 788999888654
No 133
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.48 E-value=27 Score=31.50 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=30.1
Q ss_pred CcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.....|+.|.+.|. ...+. .-|..+|..|| +|-.|++.|.+
T Consensus 23 ~~~~~C~~C~~~I~--~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIR--GPFLV--ALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCC--SCEEE--ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEec--ceEEE--ECCccccccCC--------ccCCCCCCCCC
Confidence 34567999999874 23333 44899999877 78899998875
No 134
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=26.17 E-value=28 Score=32.91 Aligned_cols=72 Identities=14% Similarity=0.273 Sum_probs=41.9
Q ss_pred CcCCCccccccccccCCCc-eeecCCCCcCChhhHHHHHh----cCCCCCCCCcC-ccchhHhhhhcHHHHhhcCCcHHh
Q 000963 1114 GLETNCPICCDFLFTSSAT-VRALPCGHFMHSDCFQAYTC----SHYICPICSKS-LGDMAVYFGMLDALLASEQLPEEY 1187 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~-v~~LpCGH~fH~~Ci~~~~~----~~~~CPiCrks-l~~m~~~~~~lD~~i~~~pmP~ey 1187 (1208)
..+..|.||.+. ..... +.=-.|+..||..|+..... ....||.|+.= +-...
T Consensus 5 ~~~~~C~~C~~~--g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~------------------- 63 (111)
T 2ysm_A 5 SSGANCAVCDSP--GDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQS------------------- 63 (111)
T ss_dssp CCCSCBTTTCCC--CCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCC-------------------
T ss_pred CCCCCCcCCCCC--CCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCcc-------------------
Confidence 357889999864 11111 22248899999999987542 23456655411 00000
Q ss_pred hccccEEEcCCCCCcCccc
Q 000963 1188 RDRCQVKILHIFKLLGSFK 1206 (1208)
Q Consensus 1188 ~~~~~~IlCndc~~~~~~~ 1206 (1208)
.+....++|..|++--|+.
T Consensus 64 ~~~~~ll~Cd~C~~~yH~~ 82 (111)
T 2ysm_A 64 GEDSKMLVCDTCDKGYHTF 82 (111)
T ss_dssp SCCTTEEECSSSCCEEEGG
T ss_pred CCCCCeeECCCCCcHHhHH
Confidence 0012478899999877754
No 135
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=26.08 E-value=37 Score=29.70 Aligned_cols=43 Identities=23% Similarity=0.506 Sum_probs=29.4
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHh----cCCCCCCCCc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSK 1162 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~----~~~~CPiCrk 1162 (1208)
...|.||.+. .+-+.--.|...||..|++.-+. ....||.|+.
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 4568888753 22122237889999999987653 3468999975
No 136
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=25.41 E-value=19 Score=33.88 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=18.8
Q ss_pred cccceEecCcccCcCCC----CccccC
Q 000963 1053 LSMAKYYCGICKFFDDE----RVVYHC 1075 (1208)
Q Consensus 1053 ~~~a~y~C~~C~l~d~~----k~~yHC 1075 (1208)
.-.|+|+|-.|.|-++. .+-|-|
T Consensus 24 s~~G~~nCKsCWf~~k~LV~C~dHYLC 50 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKGLVECNNHYLC 50 (99)
T ss_dssp CCSCCCCCCSSCSCCSSEEECSSCEEE
T ss_pred cccCcccChhhccccCCeeeecchhhH
Confidence 35899999999998876 667776
No 137
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.76 E-value=27 Score=30.70 Aligned_cols=38 Identities=21% Similarity=0.491 Sum_probs=29.2
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
...|+.|.+.|.. ..+ ..-|..+|..|| +|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~--~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG--VFV--KLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS--SCE--ECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC--cEE--EECcceeCcCcC--------eeCCCCCCCC
Confidence 5689999998774 223 345899999887 7889999875
No 138
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.59 E-value=31 Score=31.00 Aligned_cols=24 Identities=25% Similarity=0.715 Sum_probs=0.0
Q ss_pred ceEecCcccCcCCC---CccccCCCCC
Q 000963 1056 AKYYCGICKFFDDE---RVVYHCPFCN 1079 (1208)
Q Consensus 1056 a~y~C~~C~l~d~~---k~~yHC~~Cg 1079 (1208)
++|.|+-|.--.-. -.|+||..||
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~ 51 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCK 51 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCC
No 139
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.53 E-value=26 Score=32.54 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=12.1
Q ss_pred CcccceEecCcccC-cCC
Q 000963 1052 GLSMAKYYCGICKF-FDD 1068 (1208)
Q Consensus 1052 ~~~~a~y~C~~C~l-~d~ 1068 (1208)
+..|.+|.|.+|.+ ||.
T Consensus 30 ~~~m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 30 GKAYLKWICITCGHIYDE 47 (87)
T ss_dssp --CCCEEEETTTTEEEET
T ss_pred ccCCceEECCCCCeEecC
Confidence 45688999999984 564
No 140
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.20 E-value=38 Score=29.76 Aligned_cols=46 Identities=30% Similarity=0.635 Sum_probs=0.0
Q ss_pred ccccCCcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1109 KCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1109 ~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.|-.+.....|+.|.+.|. ...+..+ |..+|..|| +|-.|++.+.+
T Consensus 8 ~dy~~~~~~~C~~C~~~I~--~~~v~a~--~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 8 LDYQRLYGTRCFSCDQFIE--GEVVSAL--GKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp SCGGGSCCCBCTTTCCBCC--SCCEEET--TEEECTTTS--------SCSSSCCCCCS
T ss_pred HHHHhHhCCcCccccCEec--cceEEEC--CceeCccCC--------ccccCCCCCCC
No 141
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.05 E-value=34 Score=31.21 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=21.2
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhH
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCF 1147 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci 1147 (1208)
....|..|...|......+..+ |..||.+||
T Consensus 65 ~~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF 95 (101)
T 2cup_A 65 DSPKCKGCFKAIVAGDQNVEYK--GTVWHKDCF 95 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEESS--SCEEETTTC
T ss_pred cCCccccCCCccccCCeEEEeC--CcchHHhCC
Confidence 3457999998876443334433 889998876
No 142
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=23.40 E-value=46 Score=38.37 Aligned_cols=47 Identities=19% Similarity=0.551 Sum_probs=30.9
Q ss_pred CCCccccccccccCCCceeecCCCCcC--ChhhHHHHHh--cCCCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFM--HSDCFQAYTC--SHYICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~f--H~~Ci~~~~~--~~~~CPiCrksl~ 1165 (1208)
...|||=...| ..|++...|.|.- -..=|-.+.. ....||||.+.+.
T Consensus 249 SL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 56799887663 3478888999763 3332333322 3478999999874
No 143
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.31 E-value=36 Score=28.84 Aligned_cols=38 Identities=29% Similarity=0.684 Sum_probs=28.2
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
...|+.|.+.|.. +.+.. -|..+|..|| +|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCcC--------EECCCCCCCC
Confidence 4579999988763 23443 3788999887 6889999886
No 144
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=23.23 E-value=25 Score=32.50 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=7.4
Q ss_pred CcCCCccccccc
Q 000963 1114 GLETNCPICCDF 1125 (1208)
Q Consensus 1114 ~~~~~CpICle~ 1125 (1208)
...-.|-||.+.
T Consensus 45 ~g~l~C~~Cg~~ 56 (85)
T 1wii_A 45 TGVISCTVCLEE 56 (85)
T ss_dssp EEEEEESSSCCE
T ss_pred EEEEEcccCCCe
Confidence 345567777765
No 145
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.96 E-value=39 Score=29.44 Aligned_cols=40 Identities=23% Similarity=0.520 Sum_probs=28.6
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
...|+.|.+.|.. ..+.. -|..+|..|| +|-.|++++.+-
T Consensus 15 ~~~C~~C~~~I~~--~~v~a--~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLSA--MDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS--SCEEE--TTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CCccccCCCeecc--eeEEE--CCCeEecCcC--------ChhhCCCCCCCC
Confidence 3578899888764 33433 3788898876 688999988653
No 146
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.93 E-value=39 Score=30.08 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=10.4
Q ss_pred eEecCcccCc-C-CCCccccCCCCC
Q 000963 1057 KYYCGICKFF-D-DERVVYHCPFCN 1079 (1208)
Q Consensus 1057 ~y~C~~C~l~-d-~~k~~yHC~~Cg 1079 (1208)
.|.|..|..- + ++.+.-+|+.||
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG 52 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCG 52 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSC
T ss_pred EEECCCCCCcceeCCCCCccCCCCC
Confidence 4555555432 1 123334555555
No 147
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=22.83 E-value=46 Score=23.54 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCC-CCCCC
Q 000963 234 LRQVIFAWMEGV-KVSDK 250 (1208)
Q Consensus 234 l~~~~~~W~~~~-~~~~~ 250 (1208)
||+++-+||+++ +++.+
T Consensus 2 lqellgqwlkdggpssgr 19 (26)
T 1rij_A 2 LQELLGQWLKDGGPSSGR 19 (26)
T ss_dssp HHHHHHHHHHTTGGGSSS
T ss_pred HHHHHHHHHHcCCCCCCC
Confidence 799999999944 34433
No 148
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=22.80 E-value=29 Score=32.51 Aligned_cols=10 Identities=20% Similarity=0.830 Sum_probs=4.8
Q ss_pred ccccCCCCCc
Q 000963 1071 VVYHCPFCNL 1080 (1208)
Q Consensus 1071 ~~yHC~~Cgi 1080 (1208)
+|+||..||.
T Consensus 53 GIW~C~~C~~ 62 (92)
T 3izc_m 53 GIWTCSCCKK 62 (92)
T ss_dssp TEEECTTTCC
T ss_pred ceEEcCCCCC
Confidence 4455555543
No 149
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.41 E-value=38 Score=29.39 Aligned_cols=38 Identities=16% Similarity=0.541 Sum_probs=28.4
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~ 1165 (1208)
...|+-|...|.. ..+ ..-|..+|.+|| +|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~--~~v--~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG--RVL--EAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS--CCB--CCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cCCcccCCCEecC--eeE--EeCCCCCCCCcC--------EeCCCCCCCC
Confidence 3578999988764 222 355899999886 7889999886
No 150
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.23 E-value=40 Score=29.89 Aligned_cols=41 Identities=27% Similarity=0.508 Sum_probs=30.1
Q ss_pred cCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
....|+.|.+.|+.. +.+..+ |..+|.+|| +|-.|++.|..
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~CF--------~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLAL--DKQWHVSCF--------KCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEET--TEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCC-eEEEEC--CcccccccC--------CcCcCCCCcCC
Confidence 356799999987643 334444 888999876 78899998864
No 151
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.17 E-value=29 Score=30.15 Aligned_cols=40 Identities=30% Similarity=0.648 Sum_probs=29.8
Q ss_pred CCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
...|+.|.+.|... +.+. .-|..+|..|| +|..|++.+..
T Consensus 9 ~~~C~~C~~~I~~~-~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFA-EKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTT-TEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECC-eEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 46799999987643 3343 34888999876 79999998874
No 152
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=22.07 E-value=5.3e+02 Score=24.71 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhhhhccccch----hhhhhhhhhhHHhHHHHH
Q 000963 295 DEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVI----FPAVDVELSFAQEHAEEE 370 (1208)
Q Consensus 295 d~l~~~HkALRrEL~~L~~~a~~i~~~gd~~~L~~L~~r~~fl~~vl~~Hs~aEDevl----FPaL~~r~~me~EH~~ie 370 (1208)
..+=.-|+.|=.-+++|.+.... ++ ...+..-+.+|.+-...|=..|+.++ ||.++.+. ++++
T Consensus 17 ~~ID~qHk~L~~lin~l~~a~~~----~~---~~~i~~~l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H~------~~H~ 83 (136)
T 3agt_A 17 PSIDTQHKRLVDYINDLYRAARR----RD---MDKAREVFDALKNYAVEHFGYEERLFADYAYPEATRHK------EIHR 83 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH------HHHH
Confidence 34445788777777777766543 22 45566667888899999999998754 67665443 3344
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 000963 371 IQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARR 427 (1208)
Q Consensus 371 ~l~e~l~~ll~~l~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hl~~EE~qvfPLl~~ 427 (1208)
..++.+..+...+.. + . ..+..+| +.-|..-|..|...+-...-+.+.+
T Consensus 84 ~f~~~v~~l~~~~~~-g-~---~~~~~~l---~~~L~~Wl~~HI~~~D~~~~~~l~~ 132 (136)
T 3agt_A 84 RFVETVLKWEKQLAA-G-D---PEVVMTT---LRGLVDWLVNHIMKEDKKYEAYLRE 132 (136)
T ss_dssp HHHHHHHHHHHHHTT-C-C---HHHHHHH---HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-C-C---hHHHHHH---HHHHHHHHHHHhHHHhHHHHHHHHH
Confidence 455555555554432 2 1 1233333 4446778999999998888776644
No 153
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=21.95 E-value=58 Score=37.43 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=30.6
Q ss_pred CCCccccccccccCCCceeecCCCCc--CChhhHHHHHh--cCCCCCCCCcCcc
Q 000963 1116 ETNCPICCDFLFTSSATVRALPCGHF--MHSDCFQAYTC--SHYICPICSKSLG 1165 (1208)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~--fH~~Ci~~~~~--~~~~CPiCrksl~ 1165 (1208)
...|||=...| ..|++...|.|. |-..=|-.+.. ....||+|++.+.
T Consensus 215 SL~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 45799887663 347888899976 33333333322 2478999999875
No 154
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.78 E-value=38 Score=32.58 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=13.5
Q ss_pred ceEecCcccC-cCCCCccc-cCCCCCcc
Q 000963 1056 AKYYCGICKF-FDDERVVY-HCPFCNLC 1081 (1208)
Q Consensus 1056 a~y~C~~C~l-~d~~k~~y-HC~~CgiC 1081 (1208)
+.|.|..|.. |.-+...+ .||.||--
T Consensus 72 ~~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 3455555532 33334556 67777744
No 155
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.50 E-value=45 Score=29.90 Aligned_cols=42 Identities=24% Similarity=0.520 Sum_probs=30.8
Q ss_pred CcCCCccccccccccCCCceeecCCCCcCChhhHHHHHhcCCCCCCCCcCccch
Q 000963 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1208)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~~~~~~~~CPiCrksl~~m 1167 (1208)
.....|+.|.+.|.. ..+ ..-|..+|.+|| +|-.|++.|.+.
T Consensus 23 ~~~~~C~~C~~~I~~--~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG--AVV--KARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCS--CCE--ESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CcCCCcccCCCEecc--cEE--EECCceECccCC--------EecCCCCCCCCC
Confidence 345679999998774 223 345889999886 688999988653
No 156
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=21.30 E-value=25 Score=34.31 Aligned_cols=29 Identities=17% Similarity=0.474 Sum_probs=15.3
Q ss_pred ceEecCcccCcC---CCCccccCCCCCccccC
Q 000963 1056 AKYYCGICKFFD---DERVVYHCPFCNLCRVG 1084 (1208)
Q Consensus 1056 a~y~C~~C~l~d---~~k~~yHC~~CgiCRvG 1084 (1208)
++|+|+-|.--+ ..-.|+||..||.=-.|
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 90 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCEEEC
Confidence 456666664311 11456677777655554
No 157
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=21.22 E-value=13 Score=32.49 Aligned_cols=47 Identities=17% Similarity=0.408 Sum_probs=29.3
Q ss_pred cCCCccccccccccCCCceeec-CCCCcCChhhHHHHHh----------cCCCCCCCC
Q 000963 1115 LETNCPICCDFLFTSSATVRAL-PCGHFMHSDCFQAYTC----------SHYICPICS 1161 (1208)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~L-pCGH~fH~~Ci~~~~~----------~~~~CPiCr 1161 (1208)
....|++|..+......-|.-- .|.--||..|..--.. ..|.||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4568999998744433333334 7888999999843110 257788775
No 158
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=21.17 E-value=25 Score=32.00 Aligned_cols=12 Identities=42% Similarity=1.290 Sum_probs=10.3
Q ss_pred cceEecCcccCc
Q 000963 1055 MAKYYCGICKFF 1066 (1208)
Q Consensus 1055 ~a~y~C~~C~l~ 1066 (1208)
|.+|||+.|+.|
T Consensus 1 mPkYyCdYCd~~ 12 (77)
T 3cw1_L 1 MPKFYCDYCDTY 12 (77)
T ss_pred CCCcccccCCce
Confidence 578999999876
No 159
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.01 E-value=52 Score=29.96 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=5.3
Q ss_pred CCCCCCCcCcc
Q 000963 1155 YICPICSKSLG 1165 (1208)
Q Consensus 1155 ~~CPiCrksl~ 1165 (1208)
|.|++|.+...
T Consensus 95 ~~C~~C~~~f~ 105 (124)
T 2dlq_A 95 YKCSSCSQQFM 105 (124)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCccchhC
Confidence 44555554443
No 160
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=20.86 E-value=41 Score=41.33 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=27.1
Q ss_pred ccccccC--CcCCCccccccccccCC-CceeecCCCCcCChhhH
Q 000963 1107 DHKCREK--GLETNCPICCDFLFTSS-ATVRALPCGHFMHSDCF 1147 (1208)
Q Consensus 1107 ~H~C~e~--~~~~~CpICle~lf~s~-~~v~~LpCGH~fH~~Ci 1147 (1208)
.|.-+.. ..-..|.+|...++.-. ...+--.|+-.+|..|.
T Consensus 102 ~h~~~~~~~~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~ 145 (674)
T 3pfq_A 102 KHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCV 145 (674)
T ss_dssp CCCCCEECCSSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTT
T ss_pred CcceeecCCCCCCCCCccccccchhhcCccccccCCcchhhhhh
Confidence 4555532 34568999977655322 34455678999999997
No 161
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=20.81 E-value=31 Score=32.37 Aligned_cols=8 Identities=25% Similarity=1.049 Sum_probs=3.8
Q ss_pred ccccCCcc
Q 000963 1091 FFHCMTCN 1098 (1208)
Q Consensus 1091 ~fHC~~C~ 1098 (1208)
..||.+|+
T Consensus 54 IW~C~~Cg 61 (92)
T 3iz5_m 54 IWGCKDCG 61 (92)
T ss_dssp EEECSSSC
T ss_pred eEEcCCCC
Confidence 44555554
No 162
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.54 E-value=33 Score=26.54 Aligned_cols=16 Identities=50% Similarity=1.012 Sum_probs=12.0
Q ss_pred CCCCCCCCcCccchhH
Q 000963 1154 HYICPICSKSLGDMAV 1169 (1208)
Q Consensus 1154 ~~~CPiCrksl~~m~~ 1169 (1208)
.+.||+|.+.+.+...
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 3679999998887543
No 163
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.43 E-value=30 Score=29.28 Aligned_cols=39 Identities=28% Similarity=0.559 Sum_probs=28.9
Q ss_pred CccccccccccCCCceeecCCCCcCC--hhhHHHHHhcCCCCCCCCcCccc
Q 000963 1118 NCPICCDFLFTSSATVRALPCGHFMH--SDCFQAYTCSHYICPICSKSLGD 1166 (1208)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH--~~Ci~~~~~~~~~CPiCrksl~~ 1166 (1208)
.|+.|.+.|......+..+ |..+| ..|| +|-.|++++..
T Consensus 4 ~C~~C~~~I~~~~~~v~a~--~~~wH~~~~CF--------~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYN--NFSWHASTECF--------LCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEEET--TEEEETTTTTS--------BCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEEEC--CCccCCCCCCE--------ECCCCCCcCCC
Confidence 5899999877544444444 88999 8886 78889988853
No 164
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=20.09 E-value=4.5e+02 Score=28.01 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHhhccccccchhhHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHHHHH-
Q 000963 93 KHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQ- 171 (1208)
Q Consensus 93 ~~H~~aEDevI~PaLd~Rv~~v~~~~~~EH~~~~~lf~~L~~~l~~~~~~~~~~~~eLa~~l~~l~~~l~qHm~~EE~q- 171 (1208)
||||.||+...-++.+.--.+-...|- ..+..+-...++.|--.++..+..+...|..--..|...=..-...
T Consensus 7 ~~~~~~~~~~~~~~~~l~~~~~~~~Y~------~si~kRA~kIVa~L~LtD~~k~~~V~~vIan~y~~L~Dih~~~~akv 80 (221)
T 3kdw_A 7 HHHHHHENLYFQGAVDLDREGRDPAYV------ESIVKRSQKIVDKLELTDTVAAREVTTIIANRYFKLNDIYETRDAKV 80 (221)
T ss_dssp -------CCCCCCSSCCCCTTSCHHHH------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHhcCccccchHHH------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q ss_pred -hhhh-HhhcCCHHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCHHHHHHHHHHHh------------hcCCchhHHHHH
Q 000963 172 -VFPL-LIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLC------------KIIPKEKLLRQV 237 (1208)
Q Consensus 172 -v~PL-l~~~fS~~E~a~L~~~~i~siP~~~m~~~LpWm~~~lsp~Er~~~l~~l~------------~~~P~~~~l~~~ 237 (1208)
-.|- +..--+.+....+.+. ....|-..=..++.||...||++.-..+++.|- +++|.=+-=++.
T Consensus 81 k~ika~~~~~~~~~al~~l~~~-~da~l~~~H~~~~a~L~~~Lt~eQie~Vkd~mTyg~v~~T~k~y~~mvP~Lteeek~ 159 (221)
T 3kdw_A 81 KLAKETLTGDAKQEAVKAAEAE-KDAALYRTHFAFPADLSLYLDAKQIDAVKDGMTYGVVMVTYKATVDMIPTLKEEEKA 159 (221)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHHTHHHHHHTTTCCHHHHHHHHHHTTTTHHHHHHHHHHHHCTTCCHHHHH
T ss_pred hhhhhccCChhhhhHHHHHHHH-HHhhHHHHHHHHHHHHHhhcCHHHHHHHHcccceeeehhhHHHHHHHcCcccHHHHH
Q ss_pred -HHHHhc
Q 000963 238 -IFAWME 243 (1208)
Q Consensus 238 -~~~W~~ 243 (1208)
|..||.
T Consensus 160 ~I~~~L~ 166 (221)
T 3kdw_A 160 QIMAWLV 166 (221)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Done!