Query 000967
Match_columns 1207
No_of_seqs 489 out of 3028
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 12:01:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0298 DEAD box-containing he 100.0 1.5E-85 3.3E-90 802.0 22.7 991 45-1181 3-1019(1394)
2 KOG0385 Chromatin remodeling c 100.0 6.8E-80 1.5E-84 721.2 27.0 362 498-923 217-613 (971)
3 KOG0387 Transcription-coupled 100.0 1E-74 2.2E-79 681.7 24.5 391 498-955 255-698 (923)
4 KOG0392 SNF2 family DNA-depend 100.0 6.9E-74 1.5E-78 692.9 20.7 374 499-925 1032-1470(1549)
5 KOG0384 Chromodomain-helicase 100.0 1E-73 2.2E-78 695.8 19.4 365 498-926 420-828 (1373)
6 KOG0389 SNF2 family DNA-depend 100.0 2E-69 4.4E-74 635.9 17.3 375 498-930 448-909 (941)
7 PLN03142 Probable chromatin-re 100.0 3.4E-68 7.4E-73 671.4 29.0 364 498-925 219-615 (1033)
8 KOG4439 RNA polymerase II tran 100.0 1.2E-65 2.6E-70 596.8 28.4 398 500-925 385-874 (901)
9 KOG0391 SNF2 family DNA-depend 100.0 6.4E-67 1.4E-71 623.5 17.7 233 498-788 665-904 (1958)
10 KOG1002 Nucleotide excision re 100.0 1.5E-65 3.2E-70 575.4 27.0 392 499-927 232-767 (791)
11 KOG0388 SNF2 family DNA-depend 100.0 6.6E-66 1.4E-70 594.6 16.2 357 498-923 617-1168(1185)
12 KOG0386 Chromatin remodeling c 100.0 3.3E-63 7.1E-68 594.7 17.6 364 498-922 444-851 (1157)
13 KOG0390 DNA repair protein, SN 100.0 3.4E-58 7.4E-63 557.6 26.2 449 283-946 232-740 (776)
14 COG0553 HepA Superfamily II DN 100.0 2.9E-52 6.3E-57 535.5 20.9 376 498-926 390-839 (866)
15 KOG1001 Helicase-like transcri 100.0 4.9E-51 1.1E-55 498.7 26.4 370 497-924 188-665 (674)
16 KOG1015 Transcription regulato 100.0 1.7E-50 3.8E-55 477.2 19.9 442 498-986 728-1355(1567)
17 PF00176 SNF2_N: SNF2 family N 100.0 6.8E-46 1.5E-50 418.3 17.0 241 499-789 59-299 (299)
18 KOG1016 Predicted DNA helicase 100.0 5.4E-43 1.2E-47 407.1 17.0 406 498-938 312-874 (1387)
19 PRK04914 ATP-dependent helicas 100.0 4.1E-38 8.8E-43 397.9 28.6 342 498-923 199-619 (956)
20 KOG1000 Chromatin remodeling p 100.0 2.3E-38 4.9E-43 358.0 21.7 352 499-933 242-629 (689)
21 KOG0383 Predicted helicase [Ge 100.0 5.1E-39 1.1E-43 388.0 11.1 314 498-877 345-691 (696)
22 TIGR00603 rad25 DNA repair hel 99.9 4.8E-23 1E-27 254.0 23.7 303 499-930 299-627 (732)
23 PRK13766 Hef nuclease; Provisi 99.8 4.4E-18 9.5E-23 217.8 23.4 368 499-918 59-488 (773)
24 COG1061 SSL2 DNA or RNA helica 99.4 1.7E-11 3.6E-16 147.5 23.7 298 500-920 82-405 (442)
25 PHA02558 uvsW UvsW helicase; P 99.3 5E-11 1.1E-15 145.8 22.0 99 500-638 160-261 (501)
26 PF04851 ResIII: Type III rest 99.3 1.5E-11 3.3E-16 128.5 13.0 124 500-637 52-183 (184)
27 smart00487 DEXDc DEAD-like hel 99.3 1.5E-11 3.4E-16 128.4 11.9 114 499-639 55-173 (201)
28 cd00046 DEXDc DEAD-like helica 99.3 1.7E-11 3.8E-16 120.5 11.4 110 499-636 31-144 (144)
29 PRK11448 hsdR type I restricti 98.9 5.2E-09 1.1E-13 137.2 13.9 116 499-639 464-597 (1123)
30 COG1111 MPH1 ERCC4-like helica 98.9 1E-07 2.2E-12 112.0 21.9 128 499-655 59-190 (542)
31 KOG1123 RNA polymerase II tran 98.9 3.5E-09 7.7E-14 122.3 7.4 125 499-653 346-473 (776)
32 cd00268 DEADc DEAD-box helicas 98.7 1.7E-07 3.7E-12 100.6 13.7 111 499-637 70-185 (203)
33 TIGR00348 hsdR type I site-spe 98.6 1.9E-07 4.1E-12 118.0 13.1 110 499-639 294-405 (667)
34 TIGR00643 recG ATP-dependent D 98.6 3.3E-07 7.2E-12 115.3 13.5 112 500-641 286-401 (630)
35 PF00270 DEAD: DEAD/DEAH box h 98.5 5.3E-07 1.2E-11 93.4 10.6 118 499-644 45-169 (169)
36 KOG0354 DEAD-box like helicase 98.5 2E-05 4.3E-10 97.8 23.8 124 499-652 107-236 (746)
37 PF13872 AAA_34: P-loop contai 98.4 2.2E-06 4.8E-11 96.8 13.8 142 552-725 136-302 (303)
38 PRK10917 ATP-dependent DNA hel 98.3 1.8E-06 3.8E-11 109.7 11.9 111 500-641 312-424 (681)
39 PRK11192 ATP-dependent RNA hel 98.3 7.1E-06 1.5E-10 98.9 13.9 119 499-644 74-196 (434)
40 PRK10689 transcription-repair 98.3 5.6E-06 1.2E-10 109.6 13.6 113 499-642 650-764 (1147)
41 COG4096 HsdR Type I site-speci 98.2 3.7E-06 8E-11 104.0 10.6 105 499-638 216-322 (875)
42 TIGR00580 mfd transcription-re 98.2 6.1E-06 1.3E-10 107.1 13.2 111 499-642 501-615 (926)
43 PRK01172 ski2-like helicase; P 98.2 1.1E-05 2.4E-10 102.7 15.2 120 499-654 66-192 (674)
44 TIGR00614 recQ_fam ATP-depende 98.2 6.4E-06 1.4E-10 100.5 12.6 129 499-653 52-189 (470)
45 PRK02362 ski2-like helicase; P 98.2 2E-05 4.3E-10 101.3 16.0 115 499-646 68-189 (737)
46 PRK10590 ATP-dependent RNA hel 98.2 1.6E-05 3.5E-10 96.7 14.2 111 500-637 77-191 (456)
47 PRK00254 ski2-like helicase; P 98.1 3.6E-05 7.8E-10 98.7 15.9 115 499-646 69-187 (720)
48 PRK11776 ATP-dependent RNA hel 98.1 2.3E-05 5E-10 95.3 13.4 110 500-637 74-189 (460)
49 COG1204 Superfamily II helicas 98.1 2.4E-05 5.1E-10 99.8 13.3 122 499-656 77-205 (766)
50 PTZ00110 helicase; Provisional 98.0 3.3E-05 7.1E-10 95.9 13.4 110 500-636 205-318 (545)
51 TIGR01389 recQ ATP-dependent D 98.0 3E-05 6.5E-10 97.3 13.2 127 499-652 54-188 (591)
52 PTZ00424 helicase 45; Provisio 98.0 4.1E-05 8.9E-10 91.1 13.6 111 499-637 97-212 (401)
53 PLN00206 DEAD-box ATP-dependen 98.0 4.1E-05 8.8E-10 94.6 13.9 111 499-637 197-311 (518)
54 PRK11057 ATP-dependent DNA hel 98.0 3.6E-05 7.9E-10 96.8 13.4 128 499-653 66-201 (607)
55 PRK04837 ATP-dependent RNA hel 98.0 7.1E-05 1.5E-09 90.1 14.0 111 499-637 84-201 (423)
56 PRK01297 ATP-dependent RNA hel 97.9 0.0001 2.2E-09 90.1 14.1 113 499-637 163-281 (475)
57 PRK04537 ATP-dependent RNA hel 97.9 0.00012 2.6E-09 91.5 14.1 112 499-637 85-203 (572)
58 PRK11634 ATP-dependent RNA hel 97.8 0.00018 4E-09 90.6 14.3 110 500-636 76-190 (629)
59 COG1205 Distinct helicase fami 97.8 0.00011 2.5E-09 94.9 11.7 114 499-635 116-241 (851)
60 COG1200 RecG RecG-like helicas 97.7 9.6E-05 2.1E-09 90.8 9.9 112 500-642 313-427 (677)
61 PRK09401 reverse gyrase; Revie 97.7 0.00024 5.1E-09 94.8 14.3 88 499-611 124-214 (1176)
62 PRK05580 primosome assembly pr 97.7 0.00025 5.5E-09 90.2 13.3 107 499-638 191-306 (679)
63 TIGR03158 cas3_cyano CRISPR-as 97.7 0.00037 8.1E-09 82.2 13.9 125 500-638 41-193 (357)
64 PRK13767 ATP-dependent helicas 97.7 0.00035 7.6E-09 91.4 14.8 120 499-645 85-224 (876)
65 COG4889 Predicted helicase [Ge 97.6 6.5E-05 1.4E-09 92.5 6.4 116 499-637 207-351 (1518)
66 TIGR03817 DECH_helic helicase/ 97.6 0.00054 1.2E-08 88.0 14.3 112 500-636 83-204 (742)
67 KOG0331 ATP-dependent RNA heli 97.5 0.0016 3.6E-08 78.9 16.3 107 500-635 167-280 (519)
68 KOG0298 DEAD box-containing he 97.4 5E-05 1.1E-09 97.2 2.1 107 815-921 1214-1338(1394)
69 TIGR01587 cas3_core CRISPR-ass 97.4 0.002 4.3E-08 75.7 14.7 120 499-637 30-166 (358)
70 TIGR00595 priA primosomal prot 97.4 0.00067 1.5E-08 83.5 10.6 107 499-638 26-141 (505)
71 PLN03137 ATP-dependent DNA hel 97.2 0.0019 4.2E-08 84.2 12.2 131 499-652 501-642 (1195)
72 PHA02653 RNA helicase NPH-II; 97.2 0.012 2.7E-07 74.6 18.7 104 499-637 223-332 (675)
73 PF07652 Flavi_DEAD: Flaviviru 97.2 0.0021 4.5E-08 65.8 9.6 101 499-638 34-138 (148)
74 COG1197 Mfd Transcription-repa 97.0 0.0033 7.1E-08 81.7 11.1 113 499-642 644-758 (1139)
75 TIGR03714 secA2 accessory Sec 97.0 0.0034 7.3E-08 79.7 11.0 118 500-648 113-232 (762)
76 PRK15483 type III restriction- 96.9 0.012 2.5E-07 76.4 15.4 130 499-638 90-240 (986)
77 KOG0952 DNA/RNA helicase MER3/ 96.9 0.0039 8.4E-08 79.3 10.5 136 500-667 166-311 (1230)
78 TIGR01054 rgy reverse gyrase. 96.8 0.0032 6.9E-08 84.4 9.4 86 499-612 122-213 (1171)
79 KOG0350 DEAD-box ATP-dependent 96.7 0.0038 8.3E-08 74.0 8.3 96 498-614 215-311 (620)
80 COG1201 Lhr Lhr-like helicases 96.5 0.011 2.4E-07 75.6 10.6 125 500-654 75-206 (814)
81 TIGR02621 cas3_GSU0051 CRISPR- 96.1 0.054 1.2E-06 69.8 13.9 38 599-637 172-216 (844)
82 PRK14701 reverse gyrase; Provi 95.7 0.024 5.3E-07 78.1 9.1 87 500-611 124-213 (1638)
83 PRK09200 preprotein translocas 95.6 0.039 8.4E-07 70.9 9.8 102 499-636 120-226 (790)
84 PRK09751 putative ATP-dependen 95.5 0.06 1.3E-06 73.4 11.1 119 499-646 38-177 (1490)
85 PF13086 AAA_11: AAA domain; P 95.0 0.4 8.7E-06 51.8 14.1 36 598-638 192-228 (236)
86 TIGR00963 secA preprotein tran 95.0 0.07 1.5E-06 67.9 8.8 97 802-899 386-509 (745)
87 COG0610 Type I site-specific r 94.8 0.098 2.1E-06 69.3 10.2 115 500-643 305-420 (962)
88 PRK09694 helicase Cas3; Provis 94.2 0.25 5.4E-06 64.7 11.5 76 553-645 411-489 (878)
89 KOG0330 ATP-dependent RNA heli 94.1 0.21 4.6E-06 58.2 9.4 118 500-644 131-252 (476)
90 TIGR01407 dinG_rel DnaQ family 93.9 0.36 7.7E-06 63.7 12.3 42 550-613 414-455 (850)
91 PF11496 HDA2-3: Class II hist 93.8 0.11 2.4E-06 59.9 6.5 200 707-921 4-257 (297)
92 COG0513 SrmB Superfamily II DN 93.5 0.37 8E-06 59.9 10.9 110 501-638 102-217 (513)
93 KOG1513 Nuclear helicase MOP-3 93.5 0.27 5.8E-06 61.5 9.3 149 552-730 368-541 (1300)
94 PRK12898 secA preprotein trans 93.3 0.71 1.5E-05 58.5 12.9 116 499-636 145-269 (656)
95 PRK12899 secA preprotein trans 93.1 0.45 9.7E-06 61.9 10.8 111 500-647 137-251 (970)
96 KOG0947 Cytoplasmic exosomal R 93.1 2.1 4.6E-05 55.2 16.2 93 509-640 352-447 (1248)
97 KOG0338 ATP-dependent RNA heli 93.0 0.66 1.4E-05 55.9 11.2 121 497-647 251-378 (691)
98 COG1203 CRISPR-associated heli 92.4 0.71 1.5E-05 59.9 11.4 131 499-638 247-382 (733)
99 TIGR01970 DEAH_box_HrpB ATP-de 92.3 0.46 9.9E-06 62.1 9.7 25 886-910 312-337 (819)
100 PF00628 PHD: PHD-finger; Int 91.9 0.056 1.2E-06 45.4 0.5 30 417-450 4-33 (51)
101 KOG0335 ATP-dependent RNA heli 91.7 0.53 1.1E-05 57.0 8.5 86 499-611 153-239 (482)
102 PRK11664 ATP-dependent RNA hel 91.7 0.67 1.4E-05 60.6 10.1 26 886-911 315-341 (812)
103 COG1110 Reverse gyrase [DNA re 91.4 0.4 8.6E-06 62.0 7.3 87 499-610 126-215 (1187)
104 PRK13104 secA preprotein trans 90.9 0.57 1.2E-05 60.9 8.1 101 500-636 125-229 (896)
105 KOG0343 RNA Helicase [RNA proc 89.8 0.68 1.5E-05 56.3 7.0 119 500-646 143-265 (758)
106 PRK10536 hypothetical protein; 89.4 2.5 5.4E-05 47.9 10.6 42 598-641 176-217 (262)
107 COG4098 comFA Superfamily II D 89.3 4.4 9.5E-05 47.2 12.5 41 598-638 202-245 (441)
108 COG0514 RecQ Superfamily II DN 89.2 0.56 1.2E-05 58.5 5.9 130 498-654 57-194 (590)
109 KOG1802 RNA helicase nonsense 88.8 0.95 2E-05 56.1 7.2 35 499-537 455-490 (935)
110 COG3587 Restriction endonuclea 87.0 1.7 3.7E-05 55.5 8.1 123 499-635 105-241 (985)
111 PRK13103 secA preprotein trans 86.9 1.5 3.3E-05 57.0 7.9 102 499-636 124-229 (913)
112 PRK11131 ATP-dependent RNA hel 86.2 4 8.7E-05 55.5 11.5 61 552-636 163-228 (1294)
113 KOG0336 ATP-dependent RNA heli 85.6 2.5 5.4E-05 49.9 7.9 107 499-634 295-405 (629)
114 PRK13107 preprotein translocas 85.3 3.5 7.6E-05 53.8 9.9 112 499-648 124-239 (908)
115 KOG0951 RNA helicase BRR2, DEA 85.1 5 0.00011 53.4 11.0 114 500-646 366-492 (1674)
116 KOG1132 Helicase of the DEAD s 84.9 2.7 5.8E-05 54.0 8.4 23 359-381 42-64 (945)
117 COG4581 Superfamily II RNA hel 84.0 5.3 0.00012 53.0 10.8 75 551-649 204-281 (1041)
118 cd00079 HELICc Helicase superf 83.5 0.67 1.5E-05 45.4 2.0 82 822-903 28-131 (131)
119 smart00249 PHD PHD zinc finger 83.5 0.78 1.7E-05 36.9 2.1 23 428-450 11-33 (47)
120 PRK12904 preprotein translocas 82.9 3 6.4E-05 54.3 7.9 102 500-637 124-229 (830)
121 COG1202 Superfamily II helicas 79.6 6.8 0.00015 48.4 8.7 126 498-649 261-393 (830)
122 PRK14873 primosome assembly pr 79.3 6.3 0.00014 50.6 9.0 107 499-637 189-304 (665)
123 PF06733 DEAD_2: DEAD_2; Inte 79.2 1.3 2.7E-05 46.9 2.4 46 547-613 114-160 (174)
124 KOG0342 ATP-dependent RNA heli 78.9 5.6 0.00012 48.2 7.7 110 500-635 156-270 (543)
125 PF13604 AAA_30: AAA domain; P 78.8 16 0.00036 39.5 10.9 39 598-638 93-132 (196)
126 KOG1803 DNA helicase [Replicat 78.4 5.1 0.00011 49.8 7.4 40 594-638 354-393 (649)
127 PF09848 DUF2075: Uncharacteri 78.3 7.2 0.00016 46.2 8.6 18 595-612 80-97 (352)
128 PRK12326 preprotein translocas 76.9 8.2 0.00018 49.5 8.8 119 499-653 120-243 (764)
129 TIGR01967 DEAH_box_HrpA ATP-de 76.2 9.3 0.0002 52.3 9.5 62 552-636 156-221 (1283)
130 KOG0345 ATP-dependent RNA heli 75.9 11 0.00023 45.8 8.8 110 500-635 81-197 (567)
131 TIGR00376 DNA helicase, putati 73.8 26 0.00057 45.0 12.4 41 593-638 356-396 (637)
132 KOG1844 PHD Zn-finger proteins 73.5 1.6 3.4E-05 54.2 1.5 36 412-450 85-120 (508)
133 KOG0348 ATP-dependent RNA heli 71.6 9.7 0.00021 46.7 7.2 106 501-636 214-341 (708)
134 COG0556 UvrB Helicase subunit 69.6 7 0.00015 48.0 5.5 32 499-530 58-90 (663)
135 smart00489 DEXDc3 DEAD-like he 69.6 2.7 5.9E-05 48.4 2.1 44 548-612 207-250 (289)
136 smart00488 DEXDc2 DEAD-like he 69.6 2.7 5.9E-05 48.4 2.1 44 548-612 207-250 (289)
137 KOG1973 Chromatin remodeling p 69.5 2.1 4.6E-05 49.0 1.2 49 411-488 217-268 (274)
138 KOG0333 U5 snRNP-like RNA heli 67.6 9.9 0.00021 46.6 6.1 86 500-612 324-410 (673)
139 KOG4284 DEAD box protein [Tran 64.6 18 0.00038 45.5 7.5 117 500-645 95-217 (980)
140 PF13401 AAA_22: AAA domain; P 64.4 5.6 0.00012 39.2 2.9 35 600-636 89-125 (131)
141 PRK12906 secA preprotein trans 64.1 14 0.0003 48.2 7.0 98 802-900 421-546 (796)
142 PRK11747 dinG ATP-dependent DN 63.7 4.6 0.0001 52.2 2.7 48 548-614 215-262 (697)
143 PF02399 Herpes_ori_bp: Origin 63.1 18 0.0004 46.8 7.7 100 499-635 79-189 (824)
144 KOG0926 DEAH-box RNA helicase 61.7 16 0.00036 46.8 6.7 34 553-609 350-383 (1172)
145 PF07517 SecA_DEAD: SecA DEAD- 60.2 73 0.0016 36.5 11.1 87 499-610 119-209 (266)
146 KOG0339 ATP-dependent RNA heli 60.0 34 0.00074 42.0 8.6 111 496-635 293-410 (731)
147 TIGR03117 cas_csf4 CRISPR-asso 58.3 6.9 0.00015 49.9 2.8 43 550-614 180-222 (636)
148 TIGR00604 rad3 DNA repair heli 56.9 6.1 0.00013 51.2 2.1 64 515-613 172-235 (705)
149 KOG0347 RNA helicase [RNA proc 56.6 27 0.00059 43.2 7.1 64 500-568 265-329 (731)
150 PF07227 DUF1423: Protein of u 56.3 8.4 0.00018 46.4 2.9 76 413-521 129-207 (446)
151 KOG0340 ATP-dependent RNA heli 55.4 47 0.001 39.3 8.5 121 500-644 77-201 (442)
152 PF02562 PhoH: PhoH-like prote 55.4 9.5 0.00021 41.9 3.0 44 597-642 118-161 (205)
153 PRK12902 secA preprotein trans 55.1 36 0.00078 44.9 8.3 87 499-610 127-217 (939)
154 COG1198 PriA Primosomal protei 54.6 44 0.00095 43.5 9.0 106 499-637 246-360 (730)
155 KOG4323 Polycomb-like PHD Zn-f 52.6 5 0.00011 48.6 0.3 53 415-487 171-223 (464)
156 TIGR02881 spore_V_K stage V sp 51.8 30 0.00066 39.0 6.4 20 359-378 44-63 (261)
157 COG5034 TNG2 Chromatin remodel 46.8 8.8 0.00019 42.9 1.0 49 410-487 218-269 (271)
158 PRK14964 DNA polymerase III su 46.4 1.4E+02 0.003 37.3 11.3 39 598-639 116-158 (491)
159 CHL00122 secA preprotein trans 44.4 50 0.0011 43.5 7.3 87 499-610 118-208 (870)
160 PRK08074 bifunctional ATP-depe 43.3 15 0.00032 49.4 2.5 44 548-613 427-470 (928)
161 KOG1805 DNA replication helica 43.1 1.3E+02 0.0029 39.9 10.5 41 593-638 791-831 (1100)
162 PRK07246 bifunctional ATP-depe 41.0 17 0.00038 48.0 2.6 42 548-612 409-450 (820)
163 KOG0949 Predicted helicase, DE 40.2 59 0.0013 43.0 6.8 143 476-649 537-682 (1330)
164 KOG0353 ATP-dependent DNA heli 40.0 33 0.00071 40.3 4.2 130 499-649 135-273 (695)
165 TIGR00269 conserved hypothetic 40.0 47 0.001 32.4 4.8 63 1063-1127 36-102 (104)
166 KOG0351 ATP-dependent DNA heli 39.9 39 0.00084 45.2 5.4 136 496-657 302-451 (941)
167 KOG1133 Helicase of the DEAD s 38.3 14 0.00031 46.6 1.1 56 525-613 308-363 (821)
168 KOG0948 Nuclear exosomal RNA h 38.1 61 0.0013 41.7 6.3 41 551-613 210-250 (1041)
169 PRK07764 DNA polymerase III su 37.0 89 0.0019 41.5 8.0 20 361-380 41-60 (824)
170 PF13173 AAA_14: AAA domain 35.9 34 0.00073 34.1 3.2 40 598-638 61-100 (128)
171 KOG0328 Predicted ATP-dependen 34.4 1.8E+02 0.0039 33.6 8.7 124 500-655 97-225 (400)
172 PRK12900 secA preprotein trans 34.0 1.2E+02 0.0025 40.8 8.2 98 511-645 196-293 (1025)
173 COG1198 PriA Primosomal protei 32.5 74 0.0016 41.4 6.1 74 477-565 473-547 (730)
174 KOG0337 ATP-dependent RNA heli 31.9 59 0.0013 39.2 4.7 105 499-635 91-204 (529)
175 PF00271 Helicase_C: Helicase 31.2 47 0.001 29.7 3.0 24 872-895 54-78 (78)
176 PF05876 Terminase_GpA: Phage 31.2 1.6E+02 0.0035 37.3 8.8 56 592-647 128-190 (557)
177 PF13177 DNA_pol3_delta2: DNA 31.1 5.1E+02 0.011 27.1 11.3 37 597-636 101-141 (162)
178 PRK12901 secA preprotein trans 30.2 1.5E+02 0.0033 39.9 8.4 101 511-647 227-327 (1112)
179 PRK14965 DNA polymerase III su 29.7 1.5E+02 0.0032 37.9 8.1 20 361-380 42-61 (576)
180 PHA00673 acetyltransferase dom 29.4 75 0.0016 33.5 4.6 44 599-642 88-134 (154)
181 KOG3259 Peptidyl-prolyl cis-tr 28.9 40 0.00087 34.9 2.3 59 321-382 7-65 (163)
182 KOG0334 RNA helicase [RNA proc 28.5 1.1E+02 0.0024 40.8 6.6 57 500-563 440-499 (997)
183 TIGR02880 cbbX_cfxQ probable R 27.7 77 0.0017 36.5 4.7 20 359-378 60-79 (284)
184 PRK06647 DNA polymerase III su 27.0 2.2E+02 0.0048 36.2 8.9 20 361-380 42-61 (563)
185 COG1702 PhoH Phosphate starvat 26.2 31 0.00066 40.7 1.1 40 599-641 244-284 (348)
186 PRK07940 DNA polymerase III su 26.1 1.1E+02 0.0024 37.1 5.8 22 359-380 38-59 (394)
187 PRK12903 secA preprotein trans 25.5 1.7E+02 0.0037 38.8 7.6 100 802-903 407-535 (925)
188 PLN03025 replication factor C 25.4 82 0.0018 36.7 4.5 58 598-655 99-157 (319)
189 TIGR00596 rad1 DNA repair prot 24.8 4.2E+02 0.009 35.4 11.0 65 551-638 6-74 (814)
190 PRK14971 DNA polymerase III su 24.6 4.7E+02 0.01 33.7 11.3 59 598-658 121-182 (614)
191 TIGR00631 uvrb excinuclease AB 24.5 1.3E+02 0.0028 39.1 6.3 25 499-523 55-80 (655)
192 COG1875 NYN ribonuclease and A 22.7 64 0.0014 38.5 2.8 39 599-639 352-390 (436)
193 PF12340 DUF3638: Protein of u 22.5 1.6E+02 0.0035 33.0 5.8 23 500-522 72-94 (229)
194 CHL00181 cbbX CbbX; Provisiona 22.2 1.2E+02 0.0026 35.0 5.0 19 361-379 63-81 (287)
195 PRK07003 DNA polymerase III su 22.2 91 0.002 40.8 4.2 59 597-657 118-179 (830)
196 PF07496 zf-CW: CW-type Zinc F 21.6 31 0.00067 29.2 0.0 15 430-444 2-16 (50)
197 COG4646 DNA methylase [Transcr 21.6 48 0.001 40.2 1.5 32 625-656 472-503 (637)
198 TIGR00595 priA primosomal prot 21.2 1.9E+02 0.004 36.3 6.7 54 509-565 270-324 (505)
199 TIGR01447 recD exodeoxyribonuc 20.4 87 0.0019 39.9 3.6 40 597-638 258-297 (586)
200 PF12387 Peptidase_C74: Pestiv 20.3 90 0.0019 33.1 3.0 28 1060-1087 103-135 (200)
201 PF13871 Helicase_C_4: Helicas 20.0 85 0.0018 36.2 3.1 54 867-922 86-141 (278)
No 1
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-85 Score=802.01 Aligned_cols=991 Identities=26% Similarity=0.275 Sum_probs=763.9
Q ss_pred CCCCCeEEEEcCcccccc--CCCchhhhhhccccccccc---cceeeecccccccceEEEEEEccccccccceeccCccc
Q 000967 45 DVDHPFFVEVNRTCWLLD--EHLDISEIVLTDLKLREEF---SGFIISEDFYQVSRYTLRLHVCHVNEFIGRIKLGHWPL 119 (1207)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1207)
+++.|+.++.+-+...+. +..+..++|++.++..+.+ +++..+-+..++..+ +|+.|++.+||.+++.||||+
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vit~~s~l~r~~~~~t~t~~~~~~~~~~~--~~~~~~~~n~v~~~~~~~~~~ 80 (1394)
T KOG0298|consen 3 KKYPLDESMSEDEEYIETWKDLPKNRVIVITKRSPLVRGVLLRTITSHFQIPAAQYG--TLLAYVSDNVVRFYAETYRRN 80 (1394)
T ss_pred CccchhhhhhhhHHHHHHHHhcCCCceEEEecCChhhhcceeeEEeecccchhhhcc--eeEeecchhHHHHHHhhhccc
Confidence 345566666655443332 4788999999999988776 555555555555555 999999999999999999999
Q ss_pred ccCCcchhhhhhhhhccccccceEEeecccCCCCccchhhHhhhhcceEEeeccCCCCcccccccceeeEEeccchhhhh
Q 000967 120 LSSNDVTLEFVEKCMEEEMETCKIMLSGSFDAPDEGITGLVHLASMEFLTLRPTLGITFSEDMSSLRVRVEILKSAFDAC 199 (1207)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~vl~~~~~~~ 199 (1207)
.++.|++.+++....+.+ +++...++-+|+++.++.++.++...+.+++++-+.+ .+......+++.-+...++.|
T Consensus 81 ~s~~d~~~~~~~~k~~~~-~~~es~~~~~~~~~~~~~s~~~~~~~~~~l~~ic~~~---Nq~r~t~~l~~~ki~~s~~s~ 156 (1394)
T KOG0298|consen 81 NSPMDGTVLCEDNKEVPP-ESPESPTLFSYGKKREVFSDNAVEHKGIELILICIPK---NQNRRTRYLKVRKIRQSSGSC 156 (1394)
T ss_pred CCccccceeeccccccCC-CCCCcchHHHhcccccccchHHHHhhcchhhhhcccc---cccccchhhhHHHHhccchhh
Confidence 999999999998887777 8899999999999999999999999999888764322 344556788888899999999
Q ss_pred hhhhhhchHHHHHHHHHHHhhhCCCcCCcccccccccccchhhhcccccccCccccccCCCCCHHHHHHHhccCCCCCCc
Q 000967 200 ESLLENSRKTWKKSMINVMSWLRPEVLTSEARYGVSKSMEMDVELMTRTKNDVSASQKHASFDVARFYEAIKRSKAEPML 279 (1207)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~y~~ik~~~~~~~~ 279 (1207)
...+.++.+-|++.|...|.|.++..++++..|+..-+... .........+-........+|-..++..+.+.......
T Consensus 157 ~~~lt~t~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~d-~e~~~~l~~~~k~t~~n~~~d~~~~~~~i~~l~~s~~~ 235 (1394)
T KOG0298|consen 157 ILVLTNTQTHVRKRLIREMIVGLQKLTLFFKDFPGSFEFKD-AEQEKVLKFELKTTSTNKLFDALYEKHRITVLVESERS 235 (1394)
T ss_pred hHhhhhhhhhHHHHHHHHHHhcccccccccccCCceeeech-HHHHHHHhhhhhhhhhhhhhhhHHhhhhccccchhccC
Confidence 99999999999999999999999999888776664322111 00011111111122234456666666665554433222
Q ss_pred cCCCCCccCCcchHHHHHHHHHHhcccCCCCCC------chhhhccccCCCCCcccccCccccceeccCCCcccCCCCCC
Q 000967 280 EEDLPDLLPLLRPYQRRAAYWMVQREKGDSASS------SERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYT 353 (1207)
Q Consensus 280 ~~~~p~L~~~LrPYQ~~aV~WMl~RE~~~~~~~------~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~ 353 (1207)
...+....+++|+||.+++.||.+|+..-.... ....+.+..-++-.++.+ |....+- +.
T Consensus 236 ~D~~~~~~~~~r~~~~r~~~~~~~~~~e~~~~s~~~It~~~~~di~~~~~~~l~~~~--------~~~~~~l------~~ 301 (1394)
T KOG0298|consen 236 LDLIKRFQSQLRKYQQRTVSWMPSREQEYTQVSANFITLHLIDDITRVFKLKLCFQF--------YSFEEEL------PK 301 (1394)
T ss_pred chHHHHhhhhccHHHHHHHHhccccchhhhhccccccccccccchHHHhhhccceec--------ccccccc------hh
Confidence 333455889999999999999999998542210 011111111111111111 1111111 11
Q ss_pred CCCcccceeecCCCcchHHHHHHHHHHhcCCCCCCccccccccccchhhhhHHHhhhhhhhhhhcccccccccccccccc
Q 000967 354 SSYVFGGILADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQ 433 (1207)
Q Consensus 354 ~~~vrGGILADEMGLGKTvq~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~cic~~~~~~~~~~g~~v~ 433 (1207)
.+...||++|||||||||++-+|++..|+.+... +.........|.|+...+...+.+.|++
T Consensus 302 e~l~~~~t~~de~gl~k~~E~~a~~~~n~~p~~~------------------~~~s~~~~~~~~~~~~~e~~~~r~nq~~ 363 (1394)
T KOG0298|consen 302 ESLSPGGTLADEMGLGKTVEFLAMLTSNRRPPDS------------------YRNSYLHQRLEEYSDEVELKRSRINQKD 363 (1394)
T ss_pred ccCCCcchHHHHhhhHHHHHHHHHHhccCCCccc------------------ccchHHHHHHHHHhhhhHhHHhHhhhhh
Confidence 2334589999999999999999999999877422 2233445567888888888888888888
Q ss_pred ccccccccccc-------ccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhhhccCCCCCCCcEEEEeC
Q 000967 434 CDICDAWQHAD-------CVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCP 506 (1207)
Q Consensus 434 c~~c~~wqh~~-------cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P 506 (1207)
|..|..|+++. |-|....-. -..........+.|..|.+.....+.+..+|+||||||
T Consensus 364 ~~~~~~~~~~g~~~~~ade~~~qk~~~---------------~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P 428 (1394)
T KOG0298|consen 364 EVLCSGDKKHGKRVQCADEMGWQKTSE---------------KLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP 428 (1394)
T ss_pred HHhhcCCccCCcceeehhhhhccchHH---------------HHHHHHhcccccchhhhhHHHhcccceeecCceEEECc
Confidence 88888877764 222211100 00111223455666677777777888899999999999
Q ss_pred CchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhccc
Q 000967 507 APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKR 586 (1207)
Q Consensus 507 ~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kr 586 (1207)
.+++.||-.||.+|+++. ++|+.|.|.++.... .+..+.+||||+|||++|+.++.|. ...++.|.+|++++
T Consensus 429 ~aIl~QW~~EI~kH~~~~-lKv~~Y~Girk~~~~-----~~~el~~yDIVlTtYdiLr~El~ht--e~~~~~R~lR~qsr 500 (1394)
T KOG0298|consen 429 NAILMQWFEEIHKHISSL-LKVLLYFGIRKTFWL-----SPFELLQYDIVLTTYDILRNELYHT--EDFGSDRQLRHQSR 500 (1394)
T ss_pred HHHHHHHHHHHHHhcccc-ceEEEEechhhhccc-----CchhhhccCEEEeehHHHHhHhhcc--cccCChhhhhcccC
Confidence 999999999999999853 899999999876532 5588999999999999999999875 56788999999999
Q ss_pred CCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCChhhhhhhh
Q 000967 587 YPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVI 666 (1207)
Q Consensus 587 y~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~~~~~F~~~~ 666 (1207)
|+.+++||..+.|||||||||||+.+..|++++|+.+|++.|||++||||||+ ++|||+||.||+..||+...+|.+.+
T Consensus 501 ~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v 579 (1394)
T KOG0298|consen 501 YMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTV 579 (1394)
T ss_pred CCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000967 667 RDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNIL 746 (1207)
Q Consensus 667 ~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~ 746 (1207)
..++... .....+..++...++|+.|.+|..++.+||+.+.++++.+++.|.++|+..+..|..++...+..++.+++
T Consensus 580 ~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l 657 (1394)
T KOG0298|consen 580 DKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNL 657 (1394)
T ss_pred HHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhcc
Confidence 8877654 45567889999999999999999999999999999999999999999999999999999988888776654
Q ss_pred hccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHH
Q 000967 747 KRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLV 826 (1207)
Q Consensus 747 ~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~k~~~e~eea~rkvL 826 (1207)
.. ..+.+.+++.....++.+|++|||+||||+++.+.+...... +++|+|..|+++...++.+..|...
T Consensus 658 ~~---------~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~~~~ls~~k~~--s~~DiL~~lle~~ed~~~~~~R~~~ 726 (1394)
T KOG0298|consen 658 DN---------SSDLASLSPQLLAIILKWLLRLRQACCHPLVGNSNLSSTKYL--SIQDILARLLENTEDECKTELRTLA 726 (1394)
T ss_pred cc---------ccccccCChhhHHHHHHHHHHHHHhhcccccccCCcchhcCC--CHHHHHHHHHHhcchhhhHHHHHHH
Confidence 21 122334566778899999999999999999999888776554 8999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhh-ccCCCCcceeEEecCCCCCccchhhhhhhhccCCCCceE
Q 000967 827 MALNGLAGIALIEKNLSQ----AVSLYKEAMAVVEEHSED-FRLDPLLNIHLHHNLTEILPMVANCATELSQNEQHFPGC 901 (1207)
Q Consensus 827 ifsq~la~L~iLe~~l~~----a~~~y~~~l~~~~e~~~~-fr~D~~~~lh~~~Nl~dwnpa~d~QA~R~~riGQ~~~v~ 901 (1207)
...+++|.+..+.+++.. ....|+..+.+..+...+ .-.|...+.|-.++...-..+
T Consensus 727 ~~~~~~a~i~~~~n~f~~~~l~i~k~y~~~~nl~~~~~~~~~~~d~d~h~~ei~~~~~~~~~------------------ 788 (1394)
T KOG0298|consen 727 SSKNGLAAIYFEKNDFPGGILQIIKYYRLKLNLANEPNEQNISVDSDLHIHEIYNLLQASSL------------------ 788 (1394)
T ss_pred HHhhhhHHHHHHHhcCchhHHHHHHHhccccccCCCchhcccccchhhHHHHHhhhhccccc------------------
Confidence 999999999999998875 344555555443333222 112333333333333300000
Q ss_pred EEEcccCCcccccchhHhhhhccccccCCCcccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHH
Q 000967 902 SEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLSDLSENGFNGDRKSDCCVSSSSFDDASLITVCENLKQKY 981 (1207)
Q Consensus 902 vyRl~t~~tiee~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~y 981 (1207)
-.-+......++++.-.+. ..-++....+.. -.+.--|..++++|
T Consensus 789 --------~~sd~~~~~~~~~~~~~~~---------------s~~~~~~~~d~~------------~~~~~~~q~~~~kl 833 (1394)
T KOG0298|consen 789 --------APSDRKLTELEHKKYQAQM---------------SRLEWKYLEDET------------RVLYSLLQDLNEKL 833 (1394)
T ss_pred --------cchhhhHHHHHHHhhhhhh---------------ccccchhhchhh------------HHHHHHHHHHHHHH
Confidence 0000111111111111110 000111111111 12566789999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhhhcccccChhHHHHHHHhhcCCcchHHHHHHHHHHhccCcccccchhccccccc
Q 000967 982 LSGFSVKLSVAQQEFRKSYMQVCNALDDREKQYSAWWLEALHHAEGNKDFSAELIRKIEEAISGSLNKSRALRTASRYRS 1061 (1207)
Q Consensus 982 l~~~~~~~~~a~~~~~~~~~~v~~~~~~~~~~~~~Ww~~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 1061 (1207)
++++..+...++.+|...+.++.+.++.++.....||++.....+.+.++..+|-. |+.+++.
T Consensus 834 ~s~~~~~~t~~~~e~~~~~~~~~~v~s~m~~k~~~~v~~~~~lqe~~~~~~~eLra-----------------i~~~~~~ 896 (1394)
T KOG0298|consen 834 ESVSILKKTFELEEFDLLATNMVNVKSSMGDKIWNKVRDDRLLQEINVEFLEELRA-----------------IAFRARF 896 (1394)
T ss_pred HHHHhhhhhhhHHHHHHHhhhhhhhhccccchhHHHHHhhhHHHHHHHHHHHHHHH-----------------HHhhhhc
Confidence 99999999999999999999999999999999999999999999999888777762 6778999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhhhhcccccccccCCCCCccccccccchHHHHHHhhheecc
Q 000967 1062 ISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDESFQDYEARLFRLKK 1141 (1207)
Q Consensus 1062 ~~gl~~~l~~~l~~l~~~r~~~~~~l~~L~~~~~~p~~~~Ie~a~~C~~C~~~~~~~~C~~C~~~~~f~~YE~~LF~~~~ 1141 (1207)
+.+++..|++...+|..++..+..+++++.+.++.+...++.+...|-.|-...-++.|.+|.+|..+..|+++.|+.+.
T Consensus 897 i~i~~l~L~~~~~~l~~s~~e~~~~~~~i~~~Ie~~~~~~~n~~~i~d~~~k~~~~h~~~~~~~d~~~~i~~~r~~~~~~ 976 (1394)
T KOG0298|consen 897 IHIMKLKLQNLKSDLIASFEEVKGVMQEICEAIETGGALVLNRMEIIDFIEKVTVCHLTDIEDYDKDKPIKPKRHRRCRL 976 (1394)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhccCCCcchHhhcccccccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999988
Q ss_pred cCCCc---ccHHHHHHHhhhhhchhhhhhcccCCCCCCCCCCC
Q 000967 1142 SQGDI---ASAEEAVDLQKKNSSLNRFYWYLSQPNKNSTSSSV 1181 (1207)
Q Consensus 1142 ~~~g~---~s~eea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1181 (1207)
..+|. +=.+|.+.+|.|.++++-|-..+++-.|..+.|-.
T Consensus 977 ~~~~~~~i~~~ce~~~~q~k~~~~~s~~~~l~~~~~~~ekSi~ 1019 (1394)
T KOG0298|consen 977 CLRRKSLILFECELFALQPKEDATVSESLELSSMEKSFEKSII 1019 (1394)
T ss_pred hhhhhHHHHHHHHHHhcCccccchhhhhhccchhhhcchhhHH
Confidence 87777 88899999999999999999999999998888733
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=6.8e-80 Score=721.16 Aligned_cols=362 Identities=23% Similarity=0.337 Sum_probs=304.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.||+||+||.|++.||.+||.+|+| ++++++|+|.+..+....+ +...-..+||+||||++..++-
T Consensus 217 ~GPfLVi~P~StL~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r--~~~~~~~fdV~iTsYEi~i~dk---------- 282 (971)
T KOG0385|consen 217 PGPFLVIAPKSTLDNWMNEFKRFTP--SLNVVVYHGDKEERAALRR--DIMLPGRFDVCITSYEIAIKDK---------- 282 (971)
T ss_pred CCCeEEEeeHhhHHHHHHHHHHhCC--CcceEEEeCCHHHHHHHHH--HhhccCCCceEeehHHHHHhhH----------
Confidence 4899999999999999999999998 9999999999876532111 2222348999999999999873
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~ 657 (1207)
+.|.++.|.++|+||||+|||.+|.+++.++.+.+.+|++|||||+||||.|||+||+||.|+.|+
T Consensus 283 --------------~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~ 348 (971)
T KOG0385|consen 283 --------------SFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFN 348 (971)
T ss_pred --------------HHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhcc
Confidence 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000967 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1207)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~ 737 (1207)
+...|..+|......++.+.+.+||.+++||+|||.|.+|... |||+.+.+++|.||+.|+++|..++.+-....
T Consensus 349 ~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~--- 423 (971)
T KOG0385|consen 349 SAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDAL--- 423 (971)
T ss_pred CHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhh---
Confidence 9999999998877778888999999999999999999999655 99999999999999999999999875422111
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHH----------HH
Q 000967 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDE----------IL 807 (1207)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~ee----------lL 807 (1207)
+ +. +..+...+++.+|+||+|||||+|+.+... +.+.+.++ +|
T Consensus 424 --------n-----------~~-----~~~~k~kL~NI~mQLRKccnHPYLF~g~eP---g~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 424 --------N-----------GE-----GKGEKTKLQNIMMQLRKCCNHPYLFDGAEP---GPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred --------c-----------cc-----ccchhhHHHHHHHHHHHhcCCccccCCCCC---CCCCCcchHHHhcCcceehH
Confidence 0 00 011357899999999999999999877322 23444333 67
Q ss_pred HHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH-----HHHHHHhhccCCCCcce---------eE
Q 000967 808 MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLLNI---------HL 873 (1207)
Q Consensus 808 ~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~l~-----~~~e~~~~fr~D~~~~l---------h~ 873 (1207)
++|+.+++..| |+||||||++.|||||++........|-+..+ .+.+.++.|+.++.-.. .+
T Consensus 477 DkLL~~Lk~~G----hRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 477 DKLLPKLKEQG----HRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred HHHHHHHHhCC----CeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 88888777777 99999999999999999988777666665544 56777888888873211 33
Q ss_pred EecCC----------CCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhc
Q 000967 874 HHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1207)
Q Consensus 874 ~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~ 923 (1207)
+.||+ ||||++|.||| |||||||+|+|.||||+|++||||+|+..+-+|.
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 44444 79999999999 9999999999999999999999999998776654
No 3
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1e-74 Score=681.74 Aligned_cols=391 Identities=19% Similarity=0.261 Sum_probs=306.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccc-ccc-------cchhhhhccCCcEEEEehHHHhhhccc
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSL-SDT-------SIMDISELVGADIVLTTYDVLKEDLSH 569 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~-~~~-------~~~~~~~l~~~DVVITTYetL~~d~~~ 569 (1207)
.+|+|||||++|+.||++||.+|+| .++|.+|||...... ... ............|+||||+.++..-
T Consensus 255 ~~paLIVCP~Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~-- 330 (923)
T KOG0387|consen 255 TKPALIVCPATIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG-- 330 (923)
T ss_pred cCceEEEccHHHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC--
Confidence 3799999999999999999999998 899999999865311 000 0011223345679999999998753
Q ss_pred CCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 000967 570 DSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1207)
Q Consensus 570 ~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~ 649 (1207)
..+..+.|++|||||||+|||++|+.+.+|++|++.+|++||||||||+|.|||+||+
T Consensus 331 ----------------------d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfD 388 (923)
T KOG0387|consen 331 ----------------------DDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFD 388 (923)
T ss_pred ----------------------cccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhh
Confidence 2588999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhhhhhcCCCCCCCc------------chHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCH
Q 000967 650 FLKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSP 717 (1207)
Q Consensus 650 FL~p~~f~~~~~F~~~~~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~ 717 (1207)
|+.|+.+|+...|.+.|..||..|.. ...-.|+.+++||+|||+|+||.. +.||.|.++|++|.||+
T Consensus 389 Fv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~ 467 (923)
T KOG0387|consen 389 FVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTK 467 (923)
T ss_pred hccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccH
Confidence 99999999999999999999998754 234478999999999999999987 67999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccccc
Q 000967 718 IEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ 797 (1207)
Q Consensus 718 ~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~ 797 (1207)
.|+.+|+++.+.- . +..+.+ . ...+|..|..||++||||.|..+......
T Consensus 468 ~QR~~Y~~fl~s~--~----v~~i~n----g--------------------~~~~l~Gi~iLrkICnHPdll~~~~~~~~ 517 (923)
T KOG0387|consen 468 LQRRLYQRFLNSS--E----VNKILN----G--------------------KRNCLSGIDILRKICNHPDLLDRRDEDEK 517 (923)
T ss_pred HHHHHHHHHhhhH--H----HHHHHc----C--------------------CccceechHHHHhhcCCcccccCcccccc
Confidence 9999999987531 1 122111 1 13467788999999999999876421111
Q ss_pred ---CC-----CCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhh-hHHHHHHHH-----HHHHHHHhhc
Q 000967 798 ---QS-----PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ-AVSLYKEAM-----AVVEEHSEDF 863 (1207)
Q Consensus 798 ---~~-----~~t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~-a~~~y~~~l-----~~~~e~~~~f 863 (1207)
.. ....-+++..|+..+...+ +++|+|+|...||+|||..+.. ....|.+.. ..++..+++|
T Consensus 518 ~~~D~~g~~k~sGKm~vl~~ll~~W~kqg----~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 518 QGPDYEGDPKRSGKMKVLAKLLKDWKKQG----DRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cCCCcCCChhhcchHHHHHHHHHHHhhCC----CEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 11 0122367888888887777 8999999999999999998874 344454443 4788999999
Q ss_pred cCCCCcce--------eEEecCC----------CCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhcc
Q 000967 864 RLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1207)
Q Consensus 864 r~D~~~~l--------h~~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~~ 924 (1207)
+.|....+ ..+.||+ ||||..|+||. |||||||+|+|.||||+|.|||||+|| .|+|
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY----~rQI 669 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY----HRQI 669 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH----HHHH
Confidence 98886444 3344554 79999999999 999999999999999999999999999 4555
Q ss_pred ccccCCCcccCCCCCCCCCcccccCCCCCCC
Q 000967 925 SREENSDFTDAEDPSGHLSDLSENGFNGDRK 955 (1207)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1207)
=++.+++... .-+.+.-++.-+.+...|.
T Consensus 670 ~Kq~Ltn~il--~~p~q~RfF~~~dl~dLFs 698 (923)
T KOG0387|consen 670 FKQFLTNRIL--KNPEQRRFFKGNDLHDLFS 698 (923)
T ss_pred HHHHHHHHHh--cCHHHhhhcccccHHHHhC
Confidence 5555544321 1123334455555554444
No 4
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=6.9e-74 Score=692.88 Aligned_cols=374 Identities=23% Similarity=0.321 Sum_probs=304.7
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.|.|||||++|..+|+.|+.+|+| .|+|..|.|....+.. ......+++|+||||+++++|++
T Consensus 1032 ~PSLIVCPsTLtGHW~~E~~kf~p--fL~v~~yvg~p~~r~~-----lR~q~~~~~iiVtSYDv~RnD~d---------- 1094 (1549)
T KOG0392|consen 1032 LPSLIVCPSTLTGHWKSEVKKFFP--FLKVLQYVGPPAERRE-----LRDQYKNANIIVTSYDVVRNDVD---------- 1094 (1549)
T ss_pred CCeEEECCchhhhHHHHHHHHhcc--hhhhhhhcCChHHHHH-----HHhhccccceEEeeHHHHHHHHH----------
Confidence 589999999999999999999998 7999999998765432 45667788999999999999986
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~~ 658 (1207)
.|.++.|.++||||+|.|||..++++++++.|.+.||++||||||||++.|||+||+||+|+++|+
T Consensus 1095 --------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGt 1160 (1549)
T KOG0392|consen 1095 --------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGT 1160 (1549)
T ss_pred --------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCc
Confidence 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCC------------cchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000967 659 SRWWIEVIRDPYENGD------------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1207)
Q Consensus 659 ~~~F~~~~~~pi~~~~------------~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1207)
.+.|.++|..||.... ..+++.||+.+-|||+||+|+||+.+ ||||..+..+|+|||.|+++|+.+
T Consensus 1161 EKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D--LPpKIIQDyyCeLs~lQ~kLY~df 1238 (1549)
T KOG0392|consen 1161 EKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD--LPPKIIQDYYCELSPLQKKLYRDF 1238 (1549)
T ss_pred HHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhheeeccCHHHHHHHHHH
Confidence 9999999999996521 25788999999999999999999888 999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcc----ccccc----C
Q 000967 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG----LRSLQ----Q 798 (1207)
Q Consensus 727 ~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~----~~~l~----~ 798 (1207)
.++..... .+..+ ++..+ ..+ ...+|++.|..||+.|+||.|+... +.... .
T Consensus 1239 ~~~~k~~~----~~~~d--------~~~~S------~gt--~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~ 1298 (1549)
T KOG0392|consen 1239 VKKAKQCV----SSQID--------GGEES------LGT--DKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAH 1298 (1549)
T ss_pred HHHhcccc----ccccc--------cchhc------cCc--chHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHH
Confidence 76521111 11000 10001 111 2689999999999999999987542 11100 0
Q ss_pred CCCC--------HHHHHHHHHHHHHHhhh----------hhcchHHHHHhHHHHHHHHHHHhhhhHH-H--HHHHH----
Q 000967 799 SPLS--------MDEILMVLIGKTKIEGE----------EALRKLVMALNGLAGIALIEKNLSQAVS-L--YKEAM---- 853 (1207)
Q Consensus 799 ~~~t--------~eelL~~Ll~k~~~e~e----------ea~rkvLifsq~la~L~iLe~~l~~a~~-~--y~~~l---- 853 (1207)
-..+ .-..|..|+..|...-. -.+|++|||+|+..||+++++++-++-. . |-+..
T Consensus 1299 ~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVp 1378 (1549)
T KOG0392|consen 1299 FNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVP 1378 (1549)
T ss_pred hhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCC
Confidence 0001 12356666665543210 2789999999999999999999876622 1 33433
Q ss_pred -HHHHHHHhhccCCCCcce--------eEEecCC----------CCCccchhhhh-hhhccCCCCceEEEEcccCCcccc
Q 000967 854 -AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIET 913 (1207)
Q Consensus 854 -~~~~e~~~~fr~D~~~~l--------h~~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee 913 (1207)
+.|.+++++|+.||...+ ..+.||+ |||||+|.||| |||||||+|.|+||||||+||+||
T Consensus 1379 p~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1379 PGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred cHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 378999999999985332 4478887 99999999999 999999999999999999999999
Q ss_pred cchhHhhhhccc
Q 000967 914 CDENARKCQRVS 925 (1207)
Q Consensus 914 ~~~~~~k~~~~~ 925 (1207)
|||.+||=|.--
T Consensus 1459 KVMgLQkFKmnv 1470 (1549)
T KOG0392|consen 1459 KVMGLQKFKMNV 1470 (1549)
T ss_pred HHhhHHHHhhHH
Confidence 999999986533
No 5
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1e-73 Score=695.81 Aligned_cols=365 Identities=20% Similarity=0.301 Sum_probs=300.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccch----hhhhccCCcEEEEehHHHhhhcccCCCC
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIM----DISELVGADIVLTTYDVLKEDLSHDSDR 573 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~----~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1207)
.||+|||+|.|++.+|+.||..|+ .+++++|+|....+...+..- .....-+++++||||+++.++..
T Consensus 420 ~gpflvvvplst~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~----- 491 (1373)
T KOG0384|consen 420 HGPFLVVVPLSTITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA----- 491 (1373)
T ss_pred cCCeEEEeehhhhHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh-----
Confidence 489999999999999999999999 799999999865432111000 00122368999999999998753
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCC
Q 000967 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1207)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p 653 (1207)
.|..++|.++++||||++||..|+++..+..+...||+++||||+||++.|||+|++||.|
T Consensus 492 -------------------~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 492 -------------------ELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred -------------------hhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Q 000967 654 SPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGY 733 (1207)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~ 733 (1207)
+.|.+...|...+ .......+..|+.+|+|+||||.|+||. ..|||+.|.|+.|+||+.|+++|+.|+++....
T Consensus 553 ~kf~~~~~f~~~~----~~~~e~~~~~L~~~L~P~~lRr~kkdve--kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~ 626 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF----DEETEEQVRKLQQILKPFLLRRLKKDVE--KSLPPKEETILRVELSDLQKQYYKAILTKNFSA 626 (1373)
T ss_pred CCCCcHHHHHHhh----cchhHHHHHHHHHHhhHHHHHHHHhhhc--cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHH
Confidence 9999999998877 3356678899999999999999999995 459999999999999999999999999865432
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCC--CCHHH------
Q 000967 734 AREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSP--LSMDE------ 805 (1207)
Q Consensus 734 a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~--~t~ee------ 805 (1207)
.. + | . ..+...+|+.+|.||+|||||+|+.+......... ...++
T Consensus 627 Lt------------K---G---~---------~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 627 LT------------K---G---A---------KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred Hh------------c---c---C---------CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 21 1 1 0 01125789999999999999999876543321111 11233
Q ss_pred -------HHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH-----HHHHHHhhccCCCC---cc
Q 000967 806 -------ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPL---LN 870 (1207)
Q Consensus 806 -------lL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~l~-----~~~e~~~~fr~D~~---~~ 870 (1207)
+|++|+.+++. .+|+||||||++.|||||+++|......|.+..+ +++..+++|+.... .+
T Consensus 680 ~sSGKlVLLDKLL~rLk~----~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKE----GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HhcCcEEeHHHHHHHHhc----CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 34455555554 4599999999999999999999999999988776 66777777876543 33
Q ss_pred e------eEEecCC----------CCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhcccc
Q 000967 871 I------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSR 926 (1207)
Q Consensus 871 l------h~~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~~~~ 926 (1207)
| .++.||+ ||||++|+||| |||||||++.|+||||||++|+||-|.+.+|+|.|..
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD 828 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLD 828 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhH
Confidence 3 5667777 89999999999 9999999999999999999999999999999998865
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-69 Score=635.85 Aligned_cols=375 Identities=21% Similarity=0.267 Sum_probs=293.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.||+|||||+|++.||.+||.+||| +|+|..|+|....|...+.... ..-..|||++|||..+...-+ +
T Consensus 448 ~gpHLVVvPsSTleNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~-~~~~~ydVllTTY~la~~~kd--------D 516 (941)
T KOG0389|consen 448 PGPHLVVVPSSTLENWLREFAKWCP--SLKVEPYYGSQDERRELRERIK-KNKDDYDVLLTTYNLAASSKD--------D 516 (941)
T ss_pred CCCcEEEecchhHHHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHh-ccCCCccEEEEEeecccCChH--------H
Confidence 3799999999999999999999998 9999999999766543222222 222389999999999875321 1
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~ 657 (1207)
++.|....|++||.||||++||..|.+++.+..++|.+|++|||||+||+|.||++||.|+.|..|.
T Consensus 517 -------------Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~ 583 (941)
T KOG0389|consen 517 -------------RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFD 583 (941)
T ss_pred -------------HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhh
Confidence 1468888999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ch-hhhhhhhcCCCC-CCC-------cchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHH
Q 000967 658 IS-RWWIEVIRDPYE-NGD-------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHE 728 (1207)
Q Consensus 658 ~~-~~F~~~~~~pi~-~~~-------~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e 728 (1207)
+. ..+...|...-. .++ .+++.+.+.+++||+|||.|++|+++ ||||..+|.+|+|+..|+.+|+.+.+
T Consensus 584 ~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~--LPpK~~~Ie~c~mse~Q~~~Y~~~~~ 661 (941)
T KOG0389|consen 584 SSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ--LPPKIQRIEYCEMSEKQKQLYDELIE 661 (941)
T ss_pred ccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCccceeEeeecchHHHHHHHHHHH
Confidence 64 344444432211 111 24677889999999999999999988 99999999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccc-----cc------
Q 000967 729 TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRS-----LQ------ 797 (1207)
Q Consensus 729 ~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~-----l~------ 797 (1207)
... ....+. +.+. . ... -+.||+||+++|||-|...-... +.
T Consensus 662 ~~~-----------~~~~~~------~~ns----~-----~~~-~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e 714 (941)
T KOG0389|consen 662 LYD-----------VKLNEV------SKNS----E-----LKS-GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNE 714 (941)
T ss_pred HHh-----------hhcccc------cccc----c-----ccc-chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCc
Confidence 420 000000 0110 0 001 35799999999999985432110 00
Q ss_pred ----------------------------------CCCCC----H----HHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 000967 798 ----------------------------------QSPLS----M----DEILMVLIGKTKIEGEEALRKLVMALNGLAGI 835 (1207)
Q Consensus 798 ----------------------------------~~~~t----~----eelL~~Ll~k~~~e~eea~rkvLifsq~la~L 835 (1207)
.-.+. | -..|..|+.+++.+| ++||+||||+.||
T Consensus 715 ~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G----~RVLiFSQFTqmL 790 (941)
T KOG0389|consen 715 PAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG----DRVLIFSQFTQML 790 (941)
T ss_pred hhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC----CEEEEeeHHHHHH
Confidence 00000 0 125677777777777 9999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHH-----HHHHHHhhccCCCCcce-------------------eEEecCCCCCccchhhhh-h
Q 000967 836 ALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDPLLNI-------------------HLHHNLTEILPMVANCAT-E 890 (1207)
Q Consensus 836 ~iLe~~l~~a~~~y~~~l~-----~~~e~~~~fr~D~~~~l-------------------h~~~Nl~dwnpa~d~QA~-R 890 (1207)
||||-.+......|.+..+ .|+..+++|+.|...++ +|+|+. ++||.+|.||- |
T Consensus 791 DILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~-dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 791 DILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDI-DFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeec-CCCCcccchhHHH
Confidence 9999998888777776654 78899999999886433 444444 69999999999 9
Q ss_pred hhccCCCCceEEEEcccCCcccccchhHhhhhccccccCC
Q 000967 891 LSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENS 930 (1207)
Q Consensus 891 ~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~~~~~~~~ 930 (1207)
|||+||+|+|+||||||++||||.|+.++|+|-..+...+
T Consensus 870 cHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred HHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 9999999999999999999999999999999988887664
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.4e-68 Score=671.42 Aligned_cols=364 Identities=20% Similarity=0.253 Sum_probs=291.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.+|+|||||+|++.||.+||.+|+| .+++++|+|....+.... ........+|||||||+++.++.
T Consensus 219 ~gp~LIVvP~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~--~~~~~~~~~dVvITSYe~l~~e~---------- 284 (1033)
T PLN03142 219 TGPHMVVAPKSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQR--EELLVAGKFDVCVTSFEMAIKEK---------- 284 (1033)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHH--HHHhcccCCCcceecHHHHHHHH----------
Confidence 4799999999999999999999997 899999999765431100 01122357999999999998864
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~ 657 (1207)
..|..+.|++||+||||+|||..|+++++++.|++.+||+|||||+||++.|||+||+||.|+.|+
T Consensus 285 --------------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~ 350 (1033)
T PLN03142 285 --------------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFS 350 (1033)
T ss_pred --------------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCC
Confidence 247888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000967 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1207)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~ 737 (1207)
+...|..+|..+........+..|+.+++|||+||+|++|... |||+.+.+++|.||+.|+++|+.+.......+
T Consensus 351 s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~--LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l--- 425 (1033)
T PLN03142 351 SAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG--LPPKKETILKVGMSQMQKQYYKALLQKDLDVV--- 425 (1033)
T ss_pred CHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh--CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH---
Confidence 9999999998765555667788999999999999999999665 99999999999999999999998876432211
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccC-------CCCCHHHHHHHH
Q 000967 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ-------SPLSMDEILMVL 810 (1207)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~-------~~~t~eelL~~L 810 (1207)
+ . + .....+++.+++||++|+||+|+.+....... .....-.+|+.|
T Consensus 426 -~--------~---------g--------~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 426 -N--------A---------G--------GERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred -h--------c---------c--------ccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 0 0 0 01346889999999999999997644321100 001122356666
Q ss_pred HHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhhccCCCCc----------------
Q 000967 811 IGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE-----AMAVVEEHSEDFRLDPLL---------------- 869 (1207)
Q Consensus 811 l~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~-----~l~~~~e~~~~fr~D~~~---------------- 869 (1207)
+.+++.. ++++|||||++.+|++|++.+......|.. ....+++.++.|+.+...
T Consensus 480 L~~Lk~~----g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 480 LPKLKER----DSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHhc----CCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 6666544 489999999999999999988655443322 234778888889764321
Q ss_pred ----ceeEEecCCCCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhccc
Q 000967 870 ----NIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVS 925 (1207)
Q Consensus 870 ----~lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~~~ 925 (1207)
..+++|++ +|||+++.||+ |||||||+++|.||||++++||||+|++.+.+|...
T Consensus 556 Lt~Ad~VIiyD~-dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 556 LATADIVILYDS-DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred hhhCCEEEEeCC-CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 11444544 59999999999 999999999999999999999999999998877653
No 8
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.2e-65 Score=596.75 Aligned_cols=398 Identities=25% Similarity=0.359 Sum_probs=295.3
Q ss_pred cEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccchh
Q 000967 500 ATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 579 (1207)
Q Consensus 500 ~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~ 579 (1207)
+||||||.||+.||..||++-.....|+|++|||.++. .+.+..+.+||||||||..+.+.-.....
T Consensus 385 ~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r------~i~~~~L~~YDvViTTY~lva~~~~~e~~------- 451 (901)
T KOG4439|consen 385 KTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKR------EISAKELRKYDVVITTYNLVANKPDDELE------- 451 (901)
T ss_pred CeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccc------cCCHHHHhhcceEEEeeeccccCCchhhh-------
Confidence 69999999999999999999998889999999998752 24678899999999999998872110000
Q ss_pred hhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCCh
Q 000967 580 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSIS 659 (1207)
Q Consensus 580 ~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~~~ 659 (1207)
-..-.++|..+.|.||||||||.|||+.|+.+.+++.|.+..|||||||||||++-|+|+|+.||+..||++.
T Consensus 452 -------~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~ 524 (901)
T KOG4439|consen 452 -------EGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL 524 (901)
T ss_pred -------cccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH
Confidence 0112378999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccc---cCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000967 660 RWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSD---ELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1207)
Q Consensus 660 ~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~---eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~ 736 (1207)
..|++.+..+- ....+++.-+++++||||||..... ...||++..+++.++|+..|...|+-+.+........
T Consensus 525 ~~Wke~i~~~s----~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq 600 (901)
T KOG4439|consen 525 KQWKENIDNMS----KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQ 600 (901)
T ss_pred HHHHHhccCcc----ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHH
Confidence 99999886543 2345678888999999999997643 3569999999999999999999999887654443333
Q ss_pred HHHHHHHHHhhccCCCCCCC----------CCccC---c-----ccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccC
Q 000967 737 VIQRLKDNILKRNVPGHASS----------DALYN---P-----IITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQ 798 (1207)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~~~----------~~~~~---~-----~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~ 798 (1207)
++.. -..+.-.+.+.+ .+... + -.......+||..|+||||+||||.+..+++.....
T Consensus 601 ~L~~----~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~ 676 (901)
T KOG4439|consen 601 FLLQ----REDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEF 676 (901)
T ss_pred HHHh----hhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHh
Confidence 2222 111111111100 00000 0 001233567999999999999999765544332110
Q ss_pred ---CCC--------------------C--------------HHHH---------HHHHHHHHHHhhhhhcchHHHHHhHH
Q 000967 799 ---SPL--------------------S--------------MDEI---------LMVLIGKTKIEGEEALRKLVMALNGL 832 (1207)
Q Consensus 799 ---~~~--------------------t--------------~eel---------L~~Ll~k~~~e~eea~rkvLifsq~l 832 (1207)
+.+ | .+++ +...+..+.......-.+++|.||++
T Consensus 677 ~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwt 756 (901)
T KOG4439|consen 677 QMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWT 756 (901)
T ss_pred hhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHH
Confidence 000 0 0000 11112222222234557999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHH-----HHHHHHHhhccCCCC---------cceeEEecCC----------CCCccchhhh
Q 000967 833 AGIALIEKNLSQAVSLYKEAM-----AVVEEHSEDFRLDPL---------LNIHLHHNLT----------EILPMVANCA 888 (1207)
Q Consensus 833 a~L~iLe~~l~~a~~~y~~~l-----~~~~e~~~~fr~D~~---------~~lh~~~Nl~----------dwnpa~d~QA 888 (1207)
.+|.+++.++.+-...|.... ..+++.++.|+...- ..-.++.||. -|||+-+.||
T Consensus 757 svLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQA 836 (901)
T KOG4439|consen 757 SVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQA 836 (901)
T ss_pred HHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHH
Confidence 999999999988877765433 467777777765443 1113334433 6999999999
Q ss_pred h-hhhccCCCCceEEEEcccCCcccccchhHhhhhccc
Q 000967 889 T-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVS 925 (1207)
Q Consensus 889 ~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~~~ 925 (1207)
. |++|+||+|+|+|||++++||+|++|+.+|..|.-.
T Consensus 837 cDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldl 874 (901)
T KOG4439|consen 837 CDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDL 874 (901)
T ss_pred HHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999887543
No 9
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=6.4e-67 Score=623.51 Aligned_cols=233 Identities=25% Similarity=0.428 Sum_probs=201.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.||.|||||+|++-||+-||++|+| +++++.|.|..+.+...+. ....-..|.|.||||.++-.++.
T Consensus 665 WGPHLIVVpTsviLnWEMElKRwcP--glKILTYyGs~kErkeKRq--gW~kPnaFHVCItSYklv~qd~~--------- 731 (1958)
T KOG0391|consen 665 WGPHLIVVPTSVILNWEMELKRWCP--GLKILTYYGSHKERKEKRQ--GWAKPNAFHVCITSYKLVFQDLT--------- 731 (1958)
T ss_pred CCCceEEeechhhhhhhHHHhhhCC--cceEeeecCCHHHHHHHhh--cccCCCeeEEeehhhHHHHhHHH---------
Confidence 3899999999999999999999998 8999999999876533221 22333568899999999999863
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~ 657 (1207)
.|.+..|.++||||||+|||.+|+.++++..+++.+|++|||||+||++.|||+|++||+|..|.
T Consensus 732 ---------------AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~ 796 (1958)
T KOG0391|consen 732 ---------------AFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFA 796 (1958)
T ss_pred ---------------HHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhh
Confidence 48889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcCCCCC---C----CcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 000967 658 ISRWWIEVIRDPYEN---G----DVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC 730 (1207)
Q Consensus 658 ~~~~F~~~~~~pi~~---~----~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~ 730 (1207)
+...|+.+|.+|... + +...+.+||++++||+|||+|.||.++ ||.|.|+|++|.||..|+.+|+.+..+.
T Consensus 797 shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ--lpkKyEHvv~CrLSkRQR~LYDDfmsq~ 874 (1958)
T KOG0391|consen 797 SHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ--LPKKYEHVVKCRLSKRQRALYDDFMSQP 874 (1958)
T ss_pred hhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh--cchhhhhheeeehhhhHHHHHHHHhhcc
Confidence 999999999998764 1 235678999999999999999999666 9999999999999999999999875421
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCC
Q 000967 731 VGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQV 788 (1207)
Q Consensus 731 ~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L 788 (1207)
-. +. .+...+.++|++.||+||++||||-|
T Consensus 875 ~T---------Ke-------------------tLkSGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 875 GT---------KE-------------------TLKSGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred ch---------hh-------------------HhhcCchhHHHHHHHHHHHHcCCCCc
Confidence 10 00 11122468999999999999999987
No 10
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-65 Score=575.37 Aligned_cols=392 Identities=28% Similarity=0.372 Sum_probs=300.0
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.|||||||.-.+.||.+||.+|+. |.+++++|||.++.. ...++..||+|+|||.++.+.+.... .|-+
T Consensus 232 a~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~~R~~-------nikel~~YDvVLTty~vvEs~yRk~~---~Gfr 300 (791)
T KOG1002|consen 232 APTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGAKRDK-------NIKELMNYDVVLTTYAVVESVYRKQD---YGFR 300 (791)
T ss_pred CCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEecccccC-------CHHHhhcCcEEEEecHHHHHHHHhcc---cccc
Confidence 579999999999999999999997 899999999987653 67889999999999999998765311 1111
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~~ 658 (1207)
+ ..--.+.+++|..+.|.||||||||.||+..|.+++|+..|.+.+||||||||+||++.|||+|++||+..||..
T Consensus 301 r----Kngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsy 376 (791)
T KOG1002|consen 301 R----KNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSY 376 (791)
T ss_pred c----cCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchh
Confidence 0 011123458899999999999999999999999999999999999999999999999999999999999998764
Q ss_pred h-------------------------------hhhhhhhcCCCCCC-----CcchHHHHHHHHHhHhhhcccccccccCC
Q 000967 659 S-------------------------------RWWIEVIRDPYENG-----DVGAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1207)
Q Consensus 659 ~-------------------------------~~F~~~~~~pi~~~-----~~~~~~~L~~lL~~~mLRRtK~dV~~eL~ 702 (1207)
+ -+|......||... +..+....+.+++.+|+||||-.-+++|.
T Consensus 377 yfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLg 456 (791)
T KOG1002|consen 377 YFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLG 456 (791)
T ss_pred hhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 3 24455556666653 22456678899999999999999999999
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 000967 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1207)
Q Consensus 703 LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQi 782 (1207)
|||+...+..=.|+.+|..+|+.++....... +.+.. .+- --+++.+|+..|+||||+
T Consensus 457 LPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkf----ntyie------------eGv------vlNNYAnIF~LitRmRQ~ 514 (791)
T KOG1002|consen 457 LPPRIVTVRRDFFNEEEKDLYESLYKDSKRKF----NTYIE------------EGV------VLNNYANIFTLITRMRQA 514 (791)
T ss_pred CCccceeeehhhhhhHHHHHHHHHHHhhHHhh----hhHHh------------hhh------hhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999986533322 22111 111 124578999999999999
Q ss_pred cCCCCCCCcccc-ccc---------------------CC------------------------------C----------
Q 000967 783 CCHPQVGSSGLR-SLQ---------------------QS------------------------------P---------- 800 (1207)
Q Consensus 783 C~HP~L~~~~~~-~l~---------------------~~------------------------------~---------- 800 (1207)
..||+|+..... .+. .+ +
T Consensus 515 aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 515 ADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred ccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence 999998543110 000 00 0
Q ss_pred ----------------CCHHH-----HHHHHHHHHHHh-hhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHH-----HH
Q 000967 801 ----------------LSMDE-----ILMVLIGKTKIE-GEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE-----AM 853 (1207)
Q Consensus 801 ----------------~t~ee-----lL~~Ll~k~~~e-~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~-----~l 853 (1207)
+.|++ -++.|++++.-- -.+---|-++||||+.||++|+-.+.+++...-. +.
T Consensus 595 ek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~ 674 (791)
T KOG1002|consen 595 EKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSP 674 (791)
T ss_pred hhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCCh
Confidence 00111 123333332211 1112237789999999999999999888654322 23
Q ss_pred HHHHHHHhhccCCCCcce--------eEEecCC----------CCCccchhhhh-hhhccCCCCceEEEEcccCCccccc
Q 000967 854 AVVEEHSEDFRLDPLLNI--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETC 914 (1207)
Q Consensus 854 ~~~~e~~~~fr~D~~~~l--------h~~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~ 914 (1207)
..+.+.++.|..|+...+ .+-.||. ||||+++-||+ |+|||||.+||.|-|++-++||||+
T Consensus 675 ~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~k 754 (791)
T KOG1002|consen 675 AARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEK 754 (791)
T ss_pred HHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHH
Confidence 477888888999987544 4455555 79999999999 9999999999999999999999999
Q ss_pred chhHhhhhccccc
Q 000967 915 DENARKCQRVSRE 927 (1207)
Q Consensus 915 ~~~~~k~~~~~~~ 927 (1207)
|..+||+|.---.
T Consensus 755 IieLQeKKa~mih 767 (791)
T KOG1002|consen 755 IIELQEKKANMIH 767 (791)
T ss_pred HHHHHHHHhhhhh
Confidence 9999999754433
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=6.6e-66 Score=594.62 Aligned_cols=357 Identities=24% Similarity=0.308 Sum_probs=292.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchh----hhhccCCcEEEEehHHHhhhcccCCCC
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD----ISELVGADIVLTTYDVLKEDLSHDSDR 573 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~----~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1207)
.||+|||+|+|++.||.+||.+|+| .++++.|.|....+...+.... -...+.++||||||.++..+..
T Consensus 617 wGPFLVVtpaStL~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek----- 689 (1185)
T KOG0388|consen 617 WGPFLVVTPASTLHNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK----- 689 (1185)
T ss_pred CCceEEeehHHHHhHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH-----
Confidence 4899999999999999999999998 9999999998766532111111 2345678999999999988743
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCC
Q 000967 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1207)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p 653 (1207)
.|.++.|.++||||||-||+..|.+++.+..++|++|++||||||||+..|||+||+|++|
T Consensus 690 -------------------y~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMP 750 (1185)
T KOG0388|consen 690 -------------------YLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMP 750 (1185)
T ss_pred -------------------HHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhh
Confidence 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhhcCCCCC-------CCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000967 654 SPFSISRWWIEVIRDPYEN-------GDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1207)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~-------~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1207)
..|.+...|.++|...|+. -+...+.+||.+|+||||||.|++|..+ |-.|+++.++|.||..|+.+|+.+
T Consensus 751 sLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE--Lg~Kteidv~CdLs~RQ~~lYq~i 828 (1185)
T KOG0388|consen 751 SLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE--LGQKTEIDVYCDLSYRQKVLYQEI 828 (1185)
T ss_pred HhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH--hccceEEEEEechhHHHHHHHHHH
Confidence 9999999999999887765 2457889999999999999999999877 999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcc-------------c
Q 000967 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSG-------------L 793 (1207)
Q Consensus 727 ~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~-------------~ 793 (1207)
...+. ...+...+|+||++||||.|+... +
T Consensus 829 k~~iS-------------------------------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl 871 (1185)
T KOG0388|consen 829 KRSIS-------------------------------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNL 871 (1185)
T ss_pred HHHhh-------------------------------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCH
Confidence 65432 133445888999999999873210 0
Q ss_pred cc---ccC-------------------------------------------------------CCC--------------
Q 000967 794 RS---LQQ-------------------------------------------------------SPL-------------- 801 (1207)
Q Consensus 794 ~~---l~~-------------------------------------------------------~~~-------------- 801 (1207)
.. .+. ++.
T Consensus 872 ~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr 951 (1185)
T KOG0388|consen 872 GDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTR 951 (1185)
T ss_pred HHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHH
Confidence 00 000 000
Q ss_pred -------------------------------------------------------------------CHHH---------
Q 000967 802 -------------------------------------------------------------------SMDE--------- 805 (1207)
Q Consensus 802 -------------------------------------------------------------------t~ee--------- 805 (1207)
.|..
T Consensus 952 ~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~ 1031 (1185)
T KOG0388|consen 952 NLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLV 1031 (1185)
T ss_pred HhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhcccccee
Confidence 0000
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHHH-----HHHHHHHhhccC-CCCcce------eE
Q 000967 806 ILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM-----AVVEEHSEDFRL-DPLLNI------HL 873 (1207)
Q Consensus 806 lL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~l-----~~~~e~~~~fr~-D~~~~l------h~ 873 (1207)
+|+.|+.+++.++ |+||+|.|++.|+++|++++......|-+.. ..+.+.+.+++. |.|.++ ..
T Consensus 1032 ~LDeLL~kLkaeg----HRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1032 VLDELLPKLKAEG----HRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred eHHHHHHHhhcCC----ceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 4678888888888 9999999999999999999988777665443 367788888877 223222 33
Q ss_pred EecCC----------CCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhc
Q 000967 874 HHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1207)
Q Consensus 874 ~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~ 923 (1207)
+.||+ ||||..|.||| ||||.||+++|+||||+++|||||++...++||.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~ 1168 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKD 1168 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHH
Confidence 44444 89999999999 9999999999999999999999999999999864
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.3e-63 Score=594.75 Aligned_cols=364 Identities=21% Similarity=0.279 Sum_probs=295.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.||.|||||.|++.||..||.+|+| ++..++|.|....|.... ......+|+|++|||+.+.++-
T Consensus 444 ~GP~LvivPlstL~NW~~Ef~kWaP--Sv~~i~YkGtp~~R~~l~---~qir~gKFnVLlTtyEyiikdk---------- 508 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVNWSSEFPKWAP--SVQKIQYKGTPQQRSGLT---KQQRHGKFNVLLTTYEYIIKDK---------- 508 (1157)
T ss_pred CCCeEEeccccccCCchhhcccccc--ceeeeeeeCCHHHHhhHH---HHHhcccceeeeeeHHHhcCCH----------
Confidence 4899999999999999999999998 999999999977653221 1222388999999999988752
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHH-HhccCeEEEEeccCCCCChhhhHhhhhccCCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMAL-RLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~-~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f 656 (1207)
..|.+|.|.++||||+|++||..++.+..+. ...+.+|++|||||+||++.|||+||+||-|..|
T Consensus 509 --------------~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IF 574 (1157)
T KOG0386|consen 509 --------------ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIF 574 (1157)
T ss_pred --------------HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchh
Confidence 4699999999999999999999999999998 6789999999999999999999999999999999
Q ss_pred CChhhhhhhhcCCCCCCCc----------chHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000967 657 SISRWWIEVIRDPYENGDV----------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1207)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~~----------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1207)
.+-..|..+|..||..-+. -.+.+||.+|+||++||.|++|..+ ||.|++.++.|.||+.|+.+|..+
T Consensus 575 nS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~--LPdKve~viKC~mSalQq~lY~~m 652 (1157)
T KOG0386|consen 575 NSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE--LPDKVEDVIKCDMSALQQSLYKQM 652 (1157)
T ss_pred hhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh--CchhhhHhhheehhhhhHhhhHHH
Confidence 9999999999999876321 2467999999999999999999766 999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccccc--CC-----
Q 000967 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ--QS----- 799 (1207)
Q Consensus 727 ~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~--~~----- 799 (1207)
.+.- ..-. +..-+..-+..+++.+|.||++||||+|+...-.... ..
T Consensus 653 ~~~g----------------------~l~~----d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~ 706 (1157)
T KOG0386|consen 653 QNKG----------------------QLLK----DTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLV 706 (1157)
T ss_pred HhCC----------------------CCCc----CchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHH
Confidence 5320 0000 0001122246789999999999999999732211111 11
Q ss_pred -CCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH-----HHHHHHhhccCCC-Ccce-
Q 000967 800 -PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRLDP-LLNI- 871 (1207)
Q Consensus 800 -~~t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~l~-----~~~e~~~~fr~D~-~~~l- 871 (1207)
.....|+|+.++.+++.-+ |+||.|+|++.+++|++++|...-..|....+ .+.+..+.|+... -.++
T Consensus 707 R~sGKfELLDRiLPKLkatg----HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATG----HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcC----cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 1134578899999988877 99999999999999999999988888877654 4555666776532 2222
Q ss_pred -------eEEecCC----------CCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhh
Q 000967 872 -------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQ 922 (1207)
Q Consensus 872 -------h~~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~ 922 (1207)
..+.||- ||||..|.||+ |||||||+++|.|+|++|.+++||+|...++.|
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~K 851 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYK 851 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHh
Confidence 2223332 79999999999 999999999999999999999999999886654
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=3.4e-58 Score=557.62 Aligned_cols=449 Identities=19% Similarity=0.205 Sum_probs=340.3
Q ss_pred CCCccCCcchHHHHHHHHHHhcccCCCCCCchhhhccccCCCCCcccccCccccceeccCCCcccCCCCCCCCCccccee
Q 000967 283 LPDLLPLLRPYQRRAAYWMVQREKGDSASSSERERSQFFSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGIL 362 (1207)
Q Consensus 283 ~p~L~~~LrPYQ~~aV~WMl~RE~~~~~~~~~~~~~~~~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGGIL 362 (1207)
.|.|...|||||++|+.||...-.+... | ....|+|+
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~------------~-------------------------------~~~~GCIm 268 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIR------------P-------------------------------KNSGGCIM 268 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccc------------c-------------------------------CCCCceEe
Confidence 4889999999999999999776554321 0 12349999
Q ss_pred ecCCCcchHHHHHHHHHHhcCCCCCCccccccccccchhhhhHHHhhhhhhhhhhccccccccccccccccccccccccc
Q 000967 363 ADEMGLGKTVELLACIFAHRKPASDDSIFIDTAVQVTDDQKVNLRRLKRERVECICGAVSESRKYKGLWVQCDICDAWQH 442 (1207)
Q Consensus 363 ADEMGLGKTvq~LALIl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh 442 (1207)
|||||+|||+++|++|.+..++.+.
T Consensus 269 Ad~~GlGKTlq~IsflwtlLrq~P~------------------------------------------------------- 293 (776)
T KOG0390|consen 269 ADEPGLGKTLQCISFIWTLLRQFPQ------------------------------------------------------- 293 (776)
T ss_pred eCCCCcchHHHHHHHHHHHHHhCcC-------------------------------------------------------
Confidence 9999999999999999987655533
Q ss_pred ccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhhhccCCCCCCCcEEEEeCCchHHHHHHHHHhcCC
Q 000967 443 ADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTR 522 (1207)
Q Consensus 443 ~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~~ 522 (1207)
-+ ......|||||.+|+.+|.+||.+|..
T Consensus 294 --------------------------------------~~-------------~~~~k~lVV~P~sLv~nWkkEF~KWl~ 322 (776)
T KOG0390|consen 294 --------------------------------------AK-------------PLINKPLVVAPSSLVNNWKKEFGKWLG 322 (776)
T ss_pred --------------------------------------cc-------------ccccccEEEccHHHHHHHHHHHHHhcc
Confidence 00 134678999999999999999999998
Q ss_pred CCCCeEEEEcCCCcccccccc--chhhhhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccc
Q 000967 523 PGSLKTCIYEGARNSSLSDTS--IMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWW 600 (1207)
Q Consensus 523 ~g~L~V~vy~G~~~~~~~~~~--~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~ 600 (1207)
+..+..+.++|..+...-... .......-.+-|.|.||++++.... .+....++
T Consensus 323 ~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~------------------------~il~~~~g 378 (776)
T KOG0390|consen 323 NHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR------------------------KILLIRPG 378 (776)
T ss_pred ccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH------------------------HHhcCCCC
Confidence 668899988887664100000 0001112345699999999997653 37778899
Q ss_pred eeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCChhhhhhhhcCCCCCCCc-----
Q 000967 601 RICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV----- 675 (1207)
Q Consensus 601 rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~~~~~F~~~~~~pi~~~~~----- 675 (1207)
++|+||||++||..|.+.+++..|++.+|++|||||+||++.|+|++|+|++|+.+++...|++.+..|+.+++.
T Consensus 379 lLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~ 458 (776)
T KOG0390|consen 379 LLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASE 458 (776)
T ss_pred eEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887432
Q ss_pred ------chHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000967 676 ------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRN 749 (1207)
Q Consensus 676 ------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~ 749 (1207)
+.+..|+.+++.|++||+-+...+. ||++.++|+.|.+|+.|+.+|+.+..... .. ..
T Consensus 459 e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~--LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~-------~~----~~--- 522 (776)
T KOG0390|consen 459 EDREREERLQELRELTNKFILRRTGDILLKY--LPGKYEYVVFCNPTPIQKELYKKLLDSMK-------MR----TL--- 522 (776)
T ss_pred hhhhhHHHHHHHHHHHHhheeecccchhhhh--CCCceeEEEEeCCcHHHHHHHHHHHHHHH-------hh----hh---
Confidence 3367899999999999999777666 99999999999999999999998865320 00 00
Q ss_pred CCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCC------ccccc------ccCC-------C---CCHHHHH
Q 000967 750 VPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS------SGLRS------LQQS-------P---LSMDEIL 807 (1207)
Q Consensus 750 ~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~------~~~~~------l~~~-------~---~t~eelL 807 (1207)
....|..++.|+++|+||.|+. +.... +... . ...--+|
T Consensus 523 -------------------~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L 583 (776)
T KOG0390|consen 523 -------------------KGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVL 583 (776)
T ss_pred -------------------hcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHH
Confidence 1125788999999999999974 10000 0000 0 0011133
Q ss_pred HHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHH---HH--HHHHHHHHHhhccCCCCc-ce--------eE
Q 000967 808 MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVVEEHSEDFRLDPLL-NI--------HL 873 (1207)
Q Consensus 808 ~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y---~~--~l~~~~e~~~~fr~D~~~-~l--------h~ 873 (1207)
..|+.. -.++.+.++++-+|++..|+++++...-....+ .+ ....|+..++.|+..+.+ ++ ..
T Consensus 584 ~~ll~~---~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~ 660 (776)
T KOG0390|consen 584 VFLLEV---IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGE 660 (776)
T ss_pred HHHHHH---HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccC
Confidence 333333 334445688888899999999998765553322 22 244788889999876654 22 33
Q ss_pred EecCC----------CCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhccccccCCCcccCCCCCCCC
Q 000967 874 HHNLT----------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHL 942 (1207)
Q Consensus 874 ~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 942 (1207)
+.||. +|||++|.||+ ||||+||+|+|.||||++.|||||+|+ +++.-++++|....|++.....
T Consensus 661 GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~----qrq~~K~~lS~~v~~~~~~~~~ 736 (776)
T KOG0390|consen 661 GLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIY----QRQTHKEGLSSMVFDEEEDVEK 736 (776)
T ss_pred ceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHH----HHHHHhhhhhheEEeccccccc
Confidence 44554 79999999999 999999999999999999999999999 5555677787777666665544
Q ss_pred Cccc
Q 000967 943 SDLS 946 (1207)
Q Consensus 943 ~~~~ 946 (1207)
.++.
T Consensus 737 ~~~~ 740 (776)
T KOG0390|consen 737 HFFT 740 (776)
T ss_pred ccch
Confidence 4444
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-52 Score=535.47 Aligned_cols=376 Identities=25% Similarity=0.319 Sum_probs=290.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCe-EEEEcCCCcc-ccccccchhhhhcc------CCcEEEEehHHHhh---h
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLK-TCIYEGARNS-SLSDTSIMDISELV------GADIVLTTYDVLKE---D 566 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~-V~vy~G~~~~-~~~~~~~~~~~~l~------~~DVVITTYetL~~---d 566 (1207)
.+|+|||||.+++.||.+|+.+|.+ .++ +.+|+|.... .. .......+. .+++++|||+.+++ +
T Consensus 390 ~~~~liv~p~s~~~nw~~e~~k~~~--~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~ 464 (866)
T COG0553 390 LGPALIVVPASLLSNWKREFEKFAP--DLRLVLVYHGEKSELDK---KREALRDLLKLHLVIIFDVVITTYELLRRFLVD 464 (866)
T ss_pred CCCeEEEecHHHHHHHHHHHhhhCc--cccceeeeeCCcccccH---HHHHHHHHhhhcccceeeEEechHHHHHHhhhh
Confidence 4799999999999999999999998 788 9999998752 00 001222222 28999999999998 4
Q ss_pred cccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHh
Q 000967 567 LSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYG 646 (1207)
Q Consensus 567 ~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~s 646 (1207)
. ..+..+.|+++|+||||+|||..|..++++..+++.+||+|||||+||++.|||+
T Consensus 465 ~------------------------~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~s 520 (866)
T COG0553 465 H------------------------GGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWS 520 (866)
T ss_pred H------------------------HHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHH
Confidence 3 3588999999999999999999999999999999999999999999999999999
Q ss_pred hhh-ccCCCCCC-ChhhhhhhhcCCCCCCCc--------chHHHHHHHHHhHhhhccccc--ccccCCCCCCeEEEEEec
Q 000967 647 LLR-FLKSSPFS-ISRWWIEVIRDPYENGDV--------GAMEFTHKFFKEIMCRSSKVH--VSDELQLPPQEECVSWLT 714 (1207)
Q Consensus 647 LL~-FL~p~~f~-~~~~F~~~~~~pi~~~~~--------~~~~~L~~lL~~~mLRRtK~d--V~~eL~LPpk~e~vv~v~ 714 (1207)
+++ |+.|+.++ +...|...|..|+..... ..+..|+.+++||++||+|.+ +..+ ||++.+.++.|.
T Consensus 521 l~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~--Lp~k~e~~~~~~ 598 (866)
T COG0553 521 LLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE--LPPKIEKVLECE 598 (866)
T ss_pred HHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh--CChhhhhhhhhc
Confidence 999 99999999 558899999988876443 344558899999999999999 6555 999999999999
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCc
Q 000967 715 FSPIEEHFYQSQHE---TCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS 791 (1207)
Q Consensus 715 LS~~Qr~lY~~l~e---~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~ 791 (1207)
+++.|+.+|....+ .....+...... . . .. ..... ....+++.+++|||+|+||.++..
T Consensus 599 l~~~q~~~y~~~~~~~~~~~~~~~~~~~~-------~-------~-~~-~~~~~--~~~~~l~~~~~lr~~~~~p~l~~~ 660 (866)
T COG0553 599 LSEEQRELYEALLEGAEKNQQLLEDLEKA-------D-------S-DE-NRIGD--SELNILALLTRLRQICNHPALVDE 660 (866)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-------c-cc-ccccc--hhhHHHHHHHHHHHhccCcccccc
Confidence 99999999999877 322222111110 0 0 00 00000 256899999999999999999776
Q ss_pred ccccccC---------------------CCCCHHHHHHHHH-HHHHHhhhhhcc--hHHHHHhHHHHHHHHHHHhhhhHH
Q 000967 792 GLRSLQQ---------------------SPLSMDEILMVLI-GKTKIEGEEALR--KLVMALNGLAGIALIEKNLSQAVS 847 (1207)
Q Consensus 792 ~~~~l~~---------------------~~~t~eelL~~Ll-~k~~~e~eea~r--kvLifsq~la~L~iLe~~l~~a~~ 847 (1207)
....... ..+..-..+..++ .....++ + ++++|+|++.++++|+..+.....
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~----~~~kvlifsq~t~~l~il~~~l~~~~~ 736 (866)
T COG0553 661 GLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEG----HYHKVLIFSQFTPVLDLLEDYLKALGI 736 (866)
T ss_pred ccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhc----ccccEEEEeCcHHHHHHHHHHHHhcCC
Confidence 5111100 0002234556666 5555555 6 999999999999999998877653
Q ss_pred HH---HHH--HHHHHHHHhhccCCCCc--------ceeEEecCC----------CCCccchhhhh-hhhccCCCCceEEE
Q 000967 848 LY---KEA--MAVVEEHSEDFRLDPLL--------NIHLHHNLT----------EILPMVANCAT-ELSQNEQHFPGCSE 903 (1207)
Q Consensus 848 ~y---~~~--l~~~~e~~~~fr~D~~~--------~lh~~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v~vy 903 (1207)
.| .+. ...+.+.++.|+.++-. ..+++.||. +|||+++.||+ |||||||+++|.||
T Consensus 737 ~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 737 KYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 22 232 35778888888887421 113333333 69999999999 99999999999999
Q ss_pred EcccCCcccccchhHhhhhcccc
Q 000967 904 KAFKIHSIETCDENARKCQRVSR 926 (1207)
Q Consensus 904 Rl~t~~tiee~~~~~~k~~~~~~ 926 (1207)
|+++++||||+|...+..|+.-.
T Consensus 817 r~i~~~tiEe~i~~~~~~K~~l~ 839 (866)
T COG0553 817 RLITRGTIEEKILELQEKKQELL 839 (866)
T ss_pred EeecCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999984433
No 15
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.9e-51 Score=498.69 Aligned_cols=370 Identities=30% Similarity=0.431 Sum_probs=295.1
Q ss_pred CCCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 497 ATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 497 ~~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+.+|||||.+++.||..|+.+...++.+.+++|+| +.. ....+..||||||||+++..
T Consensus 188 ~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g-r~k--------d~~el~~~dVVltTy~il~~----------- 247 (674)
T KOG1001|consen 188 EFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG-RTK--------DKSELNSYDVVLTTYDILKN----------- 247 (674)
T ss_pred ccCceeEecchHHHHHHHHHHhccCCccceEEEEecc-ccc--------ccchhcCCceEEeeHHHhhc-----------
Confidence 3578999999999999999998888888999999999 211 67788999999999999985
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f 656 (1207)
++|..+.|.|||+||||+++|.++++++++..|.+.+||+|||||+||+++|||+++.|+..+||
T Consensus 248 ---------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~ 312 (674)
T KOG1001|consen 248 ---------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPY 312 (674)
T ss_pred ---------------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCc
Confidence 25888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhcCCCCCCC-cchHHHHHHHHHhHhhhccccccc---ccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHH
Q 000967 657 SISRWWIEVIRDPYENGD-VGAMEFTHKFFKEIMCRSSKVHVS---DELQLPPQEECVSWLTFSPIEEHFYQSQHETCVG 732 (1207)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~-~~~~~~L~~lL~~~mLRRtK~dV~---~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~ 732 (1207)
....+|...+..|+..+. ......++.+++.+|+||+|..-. ..+.|||++..++++.++..|+.+|..+...+..
T Consensus 313 ~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~ 392 (674)
T KOG1001|consen 313 CDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRN 392 (674)
T ss_pred hhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhh
Confidence 999999999999999887 688889999999999999998432 2467999999999999999999999999876655
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCccccccc---------------
Q 000967 733 YAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ--------------- 797 (1207)
Q Consensus 733 ~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~--------------- 797 (1207)
.....+.. | ....++..++..+++|||+|+||.++........
T Consensus 393 ~~~~~~~~-----------~-----------~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~ 450 (674)
T KOG1001|consen 393 QFSNYANE-----------G-----------TVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVD 450 (674)
T ss_pred HHHHHhhh-----------c-----------hhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHH
Confidence 44332221 0 0123467899999999999999998542211100
Q ss_pred -----CC------------CCCHHHHH------------------------HHHHHH-----------------------
Q 000967 798 -----QS------------PLSMDEIL------------------------MVLIGK----------------------- 813 (1207)
Q Consensus 798 -----~~------------~~t~eelL------------------------~~Ll~k----------------------- 813 (1207)
.. ...|.... ..++..
T Consensus 451 l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~ 530 (674)
T KOG1001|consen 451 LSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKI 530 (674)
T ss_pred HhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHH
Confidence 00 00000000 011110
Q ss_pred H-HHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhccCCCCcce--------eEEecCC-
Q 000967 814 T-KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK-----EAMAVVEEHSEDFRLDPLLNI--------HLHHNLT- 878 (1207)
Q Consensus 814 ~-~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~-----~~l~~~~e~~~~fr~D~~~~l--------h~~~Nl~- 878 (1207)
+ ..++.+. .++++|+|++.++++++-.+......|. .....+......|..|+.+.+ .+++||.
T Consensus 531 l~~~~~s~~-~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~ 609 (674)
T KOG1001|consen 531 LQAKEMSEQ-PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTA 609 (674)
T ss_pred HhhccCCCC-CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhh
Confidence 0 1122233 4999999999999999987765544433 333466677778888887544 3344444
Q ss_pred ---------CCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhcc
Q 000967 879 ---------EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRV 924 (1207)
Q Consensus 879 ---------dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~~ 924 (1207)
+|||+.+.||+ |||||||+++|+|+|++.++|+||+++.+|+||+-
T Consensus 610 a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~ 665 (674)
T KOG1001|consen 610 ASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKRE 665 (674)
T ss_pred hhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHH
Confidence 89999999999 99999999999999999999999999999999764
No 16
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.7e-50 Score=477.15 Aligned_cols=442 Identities=17% Similarity=0.197 Sum_probs=304.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCC----CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCC
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRP----GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~----g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1207)
++++|||||.+++.||.+||.+|.+. ..|.|.-+...++. ..+......+..+-.|.|+.|++++.-......
T Consensus 728 ~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~--e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~v- 804 (1567)
T KOG1015|consen 728 FKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRP--EERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNV- 804 (1567)
T ss_pred CceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccCh--HHHHHHHHHHHhcCCEEEEehHHHHHHhcccch-
Confidence 57899999999999999999999972 13455544443331 111122234445668999999999985432111
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCC
Q 000967 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1207)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p 653 (1207)
+.+. .+.. ....|..-..++||+||||.|||..|.+++++.++.+++||+|||||+||||.|.|.+++|+.|
T Consensus 805 --k~rk-~ke~-----f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe 876 (1567)
T KOG1015|consen 805 --KSRK-LKEI-----FNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKE 876 (1567)
T ss_pred --hhhH-HHHH-----HHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhccc
Confidence 1111 1100 1124777789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhhcCCCCCCCc------------chHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHH
Q 000967 654 SPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEH 721 (1207)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~ 721 (1207)
+.+|+...|..+|.+||+.|.. ....-|+.+|..++-|+--..+... ||||+++|+.|.||+.|..
T Consensus 877 ~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--LPPK~eyVi~vrltelQ~~ 954 (1567)
T KOG1015|consen 877 NLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--LPPKHEYVIAVRLTELQCK 954 (1567)
T ss_pred ccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--CCCceeEEEEEeccHHHHH
Confidence 9999999999999999999753 2345688899999999888777666 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCC-----------
Q 000967 722 FYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGS----------- 790 (1207)
Q Consensus 722 lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~----------- 790 (1207)
+|+.+++... ..++ +... ++.-...+|+....|++|-+||....
T Consensus 955 LYq~yL~h~~-----------------~~G~----d~eg----~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~ 1009 (1567)
T KOG1015|consen 955 LYQYYLDHLT-----------------GVGN----DSEG----GRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRY 1009 (1567)
T ss_pred HHHHHHhhcc-----------------ccCC----cccc----ccchhhhHHHHHHHHHHHhcCCCceeechhhhhhccc
Confidence 9998765100 0011 1111 11124578999999999999997411
Q ss_pred --cc----cc-------------------------c-----c----------------------cCC--------C---C
Q 000967 791 --SG----LR-------------------------S-----L----------------------QQS--------P---L 801 (1207)
Q Consensus 791 --~~----~~-------------------------~-----l----------------------~~~--------~---~ 801 (1207)
.. +. + . +.+ + +
T Consensus 1010 ~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l 1089 (1567)
T KOG1015|consen 1010 FSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSL 1089 (1567)
T ss_pred ccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHH
Confidence 00 00 0 0 000 0 0
Q ss_pred CHH-------------------HHH-------------HHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHH-
Q 000967 802 SMD-------------------EIL-------------MVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL- 848 (1207)
Q Consensus 802 t~e-------------------elL-------------~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~- 848 (1207)
.|. +++ ..|+-.+...|++-+.++|||||.+..|++|+..|..+...
T Consensus 1090 ~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~g 1169 (1567)
T KOG1015|consen 1090 KLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREG 1169 (1567)
T ss_pred HHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccC
Confidence 000 000 11222344567888899999999999999999987654221
Q ss_pred ---------------------HHH-----HHHHHHHHHhhccCCCCcc--e-------------------eEEecCCCCC
Q 000967 849 ---------------------YKE-----AMAVVEEHSEDFRLDPLLN--I-------------------HLHHNLTEIL 881 (1207)
Q Consensus 849 ---------------------y~~-----~l~~~~e~~~~fr~D~~~~--l-------------------h~~~Nl~dwn 881 (1207)
|-. .-..++..++.|+-....+ + +|+++- -||
T Consensus 1170 k~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa-sWN 1248 (1567)
T KOG1015|consen 1170 KEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA-SWN 1248 (1567)
T ss_pred ccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec-ccC
Confidence 111 1235666777775433211 1 344444 599
Q ss_pred ccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhccccccCCCcccCCCCCCCCC---------cccccCCC
Q 000967 882 PMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDPSGHLS---------DLSENGFN 951 (1207)
Q Consensus 882 pa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 951 (1207)
|.-|.|++ ||||-||+|||.||||+..||+||+|| .++|-+++++--++|+-.-..|. .+..+..+
T Consensus 1249 PSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIY----kRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~~dd 1324 (1567)
T KOG1015|consen 1249 PSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIY----KRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPDLDD 1324 (1567)
T ss_pred CccchHHHHHHHhhcCcCceeehhhhhcccHHHHHH----HHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCccCC
Confidence 99999999 999999999999999999999999999 56677888775555543322111 11111122
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHHHHHHHHHhhhh
Q 000967 952 GDRKSDCCVSSSSFDDASLITVCENLKQKYLSGFS 986 (1207)
Q Consensus 952 ~~~~~~~~~~~~~l~~~~l~~~~~~l~~~yl~~~~ 986 (1207)
-+.+ -+.+-|.-|.|-.+.-++.++-+-.+.
T Consensus 1325 p~sE----r~~~~lpKdrllae~l~~~q~~i~~y~ 1355 (1567)
T KOG1015|consen 1325 PNSE----RDTPMLPKDRLLAELLQIHQEHIVGYH 1355 (1567)
T ss_pred cccc----cccccCCchhHHHHHHHHHHHHhhhhh
Confidence 2211 234566677777777777777665543
No 17
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=6.8e-46 Score=418.29 Aligned_cols=241 Identities=32% Similarity=0.523 Sum_probs=188.6
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
+++|||||++++.||..||.+|++++.+++++|.|..... .........++++||||+++......
T Consensus 59 ~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~vvi~ty~~~~~~~~~--------- 124 (299)
T PF00176_consen 59 KKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERR-----RLSKNQLPKYDVVITTYETLRKARKK--------- 124 (299)
T ss_dssp S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHH-----HTTSSSCCCSSEEEEEHHHHH--TST---------
T ss_pred cceeEeeccchhhhhhhhhccccccccccccccccccccc-----cccccccccceeeecccccccccccc---------
Confidence 4699999999999999999999976689999999986111 11345567899999999999921100
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~~ 658 (1207)
.....+..+.|++||+||||.+||..+..++++..|.+.++|+|||||++|++.|||+++.||+|+.+++
T Consensus 125 ----------~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~ 194 (299)
T PF00176_consen 125 ----------KDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSD 194 (299)
T ss_dssp ----------HTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSS
T ss_pred ----------ccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeecccccc
Confidence 0113577788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 000967 659 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 738 (1207)
Q Consensus 659 ~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~ 738 (1207)
...|.+.+..+.........+.|+.+++++++||+++++. ..||++.+.++.|+||+.|+.+|+.+.........
T Consensus 195 ~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~~--~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~--- 269 (299)
T PF00176_consen 195 RRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDVE--KELPPKIEHVINVELSPEQRELYNELLKEARENLK--- 269 (299)
T ss_dssp HHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGGC--TTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCT---
T ss_pred chhhhhhhhhhccccccccccccccccchhhhhhhccccc--ccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---
Confidence 9999988865533344567889999999999999999993 45999999999999999999999977654221100
Q ss_pred HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCC
Q 000967 739 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVG 789 (1207)
Q Consensus 739 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~ 789 (1207)
.. . .........++..+++|||+||||.|+
T Consensus 270 ---------~~--------~----~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 270 ---------QS--------S----RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp ---------T---------T------TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred ---------hh--------c----ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 00 0 112345788999999999999999874
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=5.4e-43 Score=407.07 Aligned_cols=406 Identities=18% Similarity=0.230 Sum_probs=276.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCC---------CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcc
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRP---------GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLS 568 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~---------g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~ 568 (1207)
++++|+|+|-+++.||..||..|.|+ ..+.|+++....+. +..+......+.....|+++.|++++--.-
T Consensus 312 AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT-~~~Rakvi~~Wv~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 312 AKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKT-FDQRAKVIEQWVQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred cceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhh-HHHHHHHHHHHhccCCEEEehHHHHHHHHH
Confidence 47899999999999999999999984 35667776654432 222223344555677899999999886442
Q ss_pred cCCCCcccch----h----------hhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEec
Q 000967 569 HDSDRHEGDR----R----------FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITG 634 (1207)
Q Consensus 569 ~~~~~~~~~~----~----------~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTG 634 (1207)
.......... + .-+.+.-|..+.+.|.+-..++||+||+|+|||..+.++.+++.|++++|++|||
T Consensus 391 k~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTG 470 (1387)
T KOG1016|consen 391 KTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTG 470 (1387)
T ss_pred hcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEec
Confidence 2100000000 0 0011112334456788899999999999999999999999999999999999999
Q ss_pred cCCCCChhhhHhhhhccCCCCCCChhhhhhhhcCCCCCCCc------------chHHHHHHHHHhHhhhcccccccccCC
Q 000967 635 TPIQRKLDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDV------------GAMEFTHKFFKEIMCRSSKVHVSDELQ 702 (1207)
Q Consensus 635 TPIqN~l~DL~sLL~FL~p~~f~~~~~F~~~~~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~~eL~ 702 (1207)
-|+||+|-|.|.+++|++|.++|++..|...|.+||..|.- .....|+.++..|+-||+..-+.. .
T Consensus 471 YPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~--~ 548 (1387)
T KOG1016|consen 471 YPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK--I 548 (1387)
T ss_pred cccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh--h
Confidence 99999999999999999999999999999999999998742 234578999999999999887744 4
Q ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHH
Q 000967 703 LPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQA 782 (1207)
Q Consensus 703 LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQi 782 (1207)
||.+.|+|+.|.+|..||++|+.+.-..+. .+... .+...+ .|.++.-.-+|
T Consensus 549 LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r-----------~~~~~-------~~~~~N----------PLkAF~vCcKI 600 (1387)
T KOG1016|consen 549 LPEKKEYVILVRKSQIQRQLYRNFMLDAKR-----------EIAAN-------NDAVFN----------PLKAFSVCCKI 600 (1387)
T ss_pred cccccceEEEEeHHHHHHHHHHHHHHHHHH-----------hhccc-------cccccC----------hHHHHHHHHHh
Confidence 999999999999999999999987532111 11100 011111 12223333344
Q ss_pred cCCCCCCCc---------------------cccc---------------c--------c--CC----------------C
Q 000967 783 CCHPQVGSS---------------------GLRS---------------L--------Q--QS----------------P 800 (1207)
Q Consensus 783 C~HP~L~~~---------------------~~~~---------------l--------~--~~----------------~ 800 (1207)
-|||++.-. ++.. + . +. +
T Consensus 601 WNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~ 680 (1387)
T KOG1016|consen 601 WNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEV 680 (1387)
T ss_pred cCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccc
Confidence 466654110 0000 0 0 00 0
Q ss_pred CCHHHHHHHHHHHHH-----------------HhhhhhcchHHHHHhHHHHHHHHHHHhhhh------------------
Q 000967 801 LSMDEILMVLIGKTK-----------------IEGEEALRKLVMALNGLAGIALIEKNLSQA------------------ 845 (1207)
Q Consensus 801 ~t~eelL~~Ll~k~~-----------------~e~eea~rkvLifsq~la~L~iLe~~l~~a------------------ 845 (1207)
.+..+.-.+|..+.. .+....+.++|+|||-+..|++|+.-+.+.
T Consensus 681 ~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~ 760 (1387)
T KOG1016|consen 681 EKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEK 760 (1387)
T ss_pred cchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhh
Confidence 011112222333221 122234578999999999999998754322
Q ss_pred HHHHHHHH-----HHHHHHHhhccCCCCcc-e--------eEEecCC----------CCCccchhhhh-hhhccCCCCce
Q 000967 846 VSLYKEAM-----AVVEEHSEDFRLDPLLN-I--------HLHHNLT----------EILPMVANCAT-ELSQNEQHFPG 900 (1207)
Q Consensus 846 ~~~y~~~l-----~~~~e~~~~fr~D~~~~-l--------h~~~Nl~----------dwnpa~d~QA~-R~~riGQ~~~v 900 (1207)
...|-... ..++..+++|+..+-.. + ..+.||. -|||--|.||. |++|-||+|+.
T Consensus 761 n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpc 840 (1387)
T KOG1016|consen 761 NRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPC 840 (1387)
T ss_pred ccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCce
Confidence 11121111 14566667776555322 1 2233333 59999999999 99999999999
Q ss_pred EEEEcccCCcccccchhHhhhhccccccCCCcccCCCC
Q 000967 901 CSEKAFKIHSIETCDENARKCQRVSREENSDFTDAEDP 938 (1207)
Q Consensus 901 ~vyRl~t~~tiee~~~~~~k~~~~~~~~~~~~~~~~~~ 938 (1207)
.|||++.-.++|-+|+ .++|+++|.|+-++|+--
T Consensus 841 fvYRlVmD~~lEkkIy----dRQIsKqGmsdRvVDd~n 874 (1387)
T KOG1016|consen 841 FVYRLVMDNSLEKKIY----DRQISKQGMSDRVVDDAN 874 (1387)
T ss_pred eEEeehhhhhhHHHHH----HHHHhhccchhhhhcccC
Confidence 9999999999999999 567999999977765433
No 19
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.1e-38 Score=397.89 Aligned_cols=342 Identities=14% Similarity=0.157 Sum_probs=228.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.+++|||||++|+.||..|+.+++ .+.+.+|.+..-..... .....+..++++|+||++++++...
T Consensus 199 ~~rvLIVvP~sL~~QW~~El~~kF---~l~~~i~~~~~~~~~~~---~~~~pf~~~~~vI~S~~~l~~~~~~-------- 264 (956)
T PRK04914 199 AERVLILVPETLQHQWLVEMLRRF---NLRFSLFDEERYAEAQH---DADNPFETEQLVICSLDFLRRNKQR-------- 264 (956)
T ss_pred CCcEEEEcCHHHHHHHHHHHHHHh---CCCeEEEcCcchhhhcc---cccCccccCcEEEEEHHHhhhCHHH--------
Confidence 468999999999999999999888 57788887654221100 0113445689999999999974210
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh---hHHHHHHHHHh--ccCeEEEEeccCCCCChhhhHhhhhccC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN---AAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~---~Sk~~kal~~L--~a~~RwlLTGTPIqN~l~DL~sLL~FL~ 652 (1207)
...+....|++||+||||+++|. .|+.++.+..| ++.++++|||||+||++.|+|++|+||+
T Consensus 265 -------------~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLd 331 (956)
T PRK04914 265 -------------LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLD 331 (956)
T ss_pred -------------HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhC
Confidence 01366779999999999999953 46778888888 5789999999999999999999999999
Q ss_pred CCCCCChhhhhhhhcC--CC-------CCCC---cchHHHHHH---------------------------HH--------
Q 000967 653 SSPFSISRWWIEVIRD--PY-------ENGD---VGAMEFTHK---------------------------FF-------- 685 (1207)
Q Consensus 653 p~~f~~~~~F~~~~~~--pi-------~~~~---~~~~~~L~~---------------------------lL-------- 685 (1207)
|+.|+++..|.+.... |+ ..+. ......|.. ++
T Consensus 332 P~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg 411 (956)
T PRK04914 332 PDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHG 411 (956)
T ss_pred CCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcC
Confidence 9999999999754321 11 1111 111111111 11
Q ss_pred -HhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCccc
Q 000967 686 -KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPII 764 (1207)
Q Consensus 686 -~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~ 764 (1207)
.++|+|+++++|. .+|++..+.+.+++.+..+..+.... . ...... +
T Consensus 412 ~~rvm~RntR~~v~---~fp~R~~~~~~l~~~~~y~~~~~~~~---~-------~~~~~~-------------------l 459 (956)
T PRK04914 412 TGRVLFRNTRAAVK---GFPKRELHPIPLPLPEQYQTAIKVSL---E-------ARARDM-------------------L 459 (956)
T ss_pred cceEEEeccHHhhc---CCCcCceeEeecCCCHHHHHHHHHhH---H-------HHHHhh-------------------c
Confidence 2688999999985 48999999999999775444332200 0 000000 0
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhh
Q 000967 765 THAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQ 844 (1207)
Q Consensus 765 ~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~ 844 (1207)
.. ..++.. +... ... . ..-..-+.|..++.. . ...|+|||++...+.+.|.+.+..
T Consensus 460 ~p---e~~~~~---~~~~--------~~~--~--~~d~Ki~~L~~~L~~---~---~~~KvLVF~~~~~t~~~L~~~L~~ 515 (956)
T PRK04914 460 YP---EQIYQE---FEDN--------ATW--W--NFDPRVEWLIDFLKS---H---RSEKVLVICAKAATALQLEQALRE 515 (956)
T ss_pred CH---HHHHHH---Hhhh--------hhc--c--ccCHHHHHHHHHHHh---c---CCCeEEEEeCcHHHHHHHHHHHhh
Confidence 00 011110 0000 000 0 000111333333322 1 147999999999999999998843
Q ss_pred h----HHHHHH--HHHHHHHHHhhccCCC--C---------------cc--eeEEecCCCCCccchhhhh-hhhccCCCC
Q 000967 845 A----VSLYKE--AMAVVEEHSEDFRLDP--L---------------LN--IHLHHNLTEILPMVANCAT-ELSQNEQHF 898 (1207)
Q Consensus 845 a----~~~y~~--~l~~~~e~~~~fr~D~--~---------------~~--lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~ 898 (1207)
. ...|.+ ....+++.++.|+.+. . +. ..++|++. |||+...|++ |+||+||++
T Consensus 516 ~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP-~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 516 REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP-FNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC-CCHHHHHHHhcccccCCCCc
Confidence 2 122333 3446777777887642 2 11 14566665 9999999999 999999999
Q ss_pred ceEEEEcccCCcccccchhHhhhhc
Q 000967 899 PGCSEKAFKIHSIETCDENARKCQR 923 (1207)
Q Consensus 899 ~v~vyRl~t~~tiee~~~~~~k~~~ 923 (1207)
+|.||.+++++|++|.++..-+++.
T Consensus 595 ~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 595 DIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred eEEEEEccCCCCHHHHHHHHHhhhc
Confidence 9999999999999999998877743
No 20
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-38 Score=358.01 Aligned_cols=352 Identities=15% Similarity=0.140 Sum_probs=240.3
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.|.|||||+|+...|.+++.+|+|. -..+.+..+.... .+.-....-|+|+||+++....
T Consensus 242 wplliVcPAsvrftWa~al~r~lps-~~pi~vv~~~~D~--------~~~~~t~~~v~ivSye~ls~l~----------- 301 (689)
T KOG1000|consen 242 WPLLIVCPASVRFTWAKALNRFLPS-IHPIFVVDKSSDP--------LPDVCTSNTVAIVSYEQLSLLH----------- 301 (689)
T ss_pred CcEEEEecHHHhHHHHHHHHHhccc-ccceEEEecccCC--------ccccccCCeEEEEEHHHHHHHH-----------
Confidence 5899999999999999999999983 3445555554331 1112233459999999998753
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHh--ccCeEEEEeccCCCCChhhhHhhhhccCCCCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L--~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f 656 (1207)
..|..-.|..||+||.|++|+..++..+++..+ .+.|.++|||||-..++.|||.++..+++-.|
T Consensus 302 -------------~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlf 368 (689)
T KOG1000|consen 302 -------------DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLF 368 (689)
T ss_pred -------------HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhccccc
Confidence 247777799999999999999999999999876 68999999999999999999999999999999
Q ss_pred CChhhhhhhhcCCCCC------CCcchHHHHHHHHHh-HhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHH
Q 000967 657 SISRWWIEVIRDPYEN------GDVGAMEFTHKFFKE-IMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHET 729 (1207)
Q Consensus 657 ~~~~~F~~~~~~pi~~------~~~~~~~~L~~lL~~-~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~ 729 (1207)
.++..|...|++.-.- .+-.++++|+.+|.. +|+||+|.||+.+ ||||...++++. ...+-..-+++...
T Consensus 369 p~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q--LPpKrr~Vv~~~-~gr~da~~~~lv~~ 445 (689)
T KOG1000|consen 369 PNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ--LPPKRREVVYVS-GGRIDARMDDLVKA 445 (689)
T ss_pred ccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCccceEEEEEc-CCccchHHHHHHHH
Confidence 9999999988764321 233567788877654 7999999999988 999966665554 33333333333221
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHH
Q 000967 730 CVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMV 809 (1207)
Q Consensus 730 ~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~ 809 (1207)
...... .+. . . .+-...++.-++.- .....-+.+-
T Consensus 446 a~~~t~-------~~~------------------~-e---~~~~~l~l~y~~tg----------------iaK~~av~ey 480 (689)
T KOG1000|consen 446 AADYTK-------VNS------------------M-E---RKHESLLLFYSLTG----------------IAKAAAVCEY 480 (689)
T ss_pred hhhcch-------hhh------------------h-h---hhhHHHHHHHHHhc----------------ccccHHHHHH
Confidence 111000 000 0 0 00111111111110 0001111121
Q ss_pred HHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhhccCCCCcce-------------
Q 000967 810 LIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEA-----MAVVEEHSEDFRLDPLLNI------------- 871 (1207)
Q Consensus 810 Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~-----l~~~~e~~~~fr~D~~~~l------------- 871 (1207)
++.+.. -+++..+|+|||..-..+|+-|+.++.....-.-+. -..++..+..|+.+.--.+
T Consensus 481 i~~~~~-l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 481 ILENYF-LPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred HHhCcc-cccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 211100 034445899999999999999998876653222111 2256777888888775333
Q ss_pred ------eEEecCCCCCccchhhhh-hhhccCCCCceEEEEcccCCcccccc--hhHhhhhccccccCCCcc
Q 000967 872 ------HLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCD--ENARKCQRVSREENSDFT 933 (1207)
Q Consensus 872 ------h~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~--~~~~k~~~~~~~~~~~~~ 933 (1207)
++.--| .|||-+=.||. |+|||||+-.|.||=|+.+||++|-. +-.+|=+.++..+++..+
T Consensus 560 ~tAa~~VVFaEL-~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~~ 629 (689)
T KOG1000|consen 560 LTAASVVVFAEL-HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSDT 629 (689)
T ss_pred eeccceEEEEEe-cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCccc
Confidence 222222 69999999999 99999999999999999999999944 445566667777776543
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=5.1e-39 Score=388.04 Aligned_cols=314 Identities=20% Similarity=0.335 Sum_probs=247.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc-----------------chhhhhccCCcEEEEeh
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS-----------------IMDISELVGADIVLTTY 560 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~-----------------~~~~~~l~~~DVVITTY 560 (1207)
.+|.||++|.+.+.+|..|+..|++ .+.+..|+|..+.+...+. .........+.+.+++|
T Consensus 345 ~~P~Lv~ap~sT~~nwe~e~~~wap--~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~ 422 (696)
T KOG0383|consen 345 PGPPLVVAPLSTIVNWEREFELWAP--SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSY 422 (696)
T ss_pred CCCceeeccCccccCCCCchhccCC--CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCch
Confidence 3799999999999999999999998 8999999998764321000 00112335577888888
Q ss_pred HHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCC
Q 000967 561 DVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRK 640 (1207)
Q Consensus 561 etL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~ 640 (1207)
++...+. +.+..+.|..+|+||||++||..|...+.+...+..++++|||||.||+
T Consensus 423 ~~~~~~~------------------------~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 423 ETIEIDQ------------------------SILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred hhcccCH------------------------HHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhh
Confidence 8877653 4689999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhccCCCCCCChhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHH
Q 000967 641 LDDLYGLLRFLKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEE 720 (1207)
Q Consensus 641 l~DL~sLL~FL~p~~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr 720 (1207)
+.+|+++|+||.++.|.+..||.+.|.+- ...+.++.|+.++.|.|+||.|.||.+. +|+|++.++.+.|++.|+
T Consensus 479 ~~el~~ll~flt~~~~~~~~~f~e~~~d~---~~~~~~~~l~~l~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~ 553 (696)
T KOG0383|consen 479 LEELFNLLNFLTPGRFNSLEWFLEEFHDI---SCEEQIKKLHLLLCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQK 553 (696)
T ss_pred hHHhhhcccccCcccccchhhhhhhcchh---hHHHHHHhhccccCchhhhhhhhhhccC--CCccceeEEEEecCHHHH
Confidence 99999999999999999999999887643 3457788999999999999999999776 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCC-
Q 000967 721 HFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS- 799 (1207)
Q Consensus 721 ~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~- 799 (1207)
++|+.++.+...... . ......+++.+|.||++|+||++... ...+...
T Consensus 554 ~~yk~~~t~n~~~l~-----------~------------------~~~~~s~~n~~mel~K~~~hpy~~~~-~e~~~~~~ 603 (696)
T KOG0383|consen 554 KYYKKILTRNWQGLL-----------A------------------GVHQYSLLNIVMELRKQCNHPYLSPL-EEPLEENG 603 (696)
T ss_pred HHHHHHHcCChHHHh-----------h------------------cchhHHHHHHHHHHHHhhcCcccCcc-ccccccch
Confidence 999988654221110 0 11235688999999999999999766 2222111
Q ss_pred ---------CCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH-----HHHHHHhhccC
Q 000967 800 ---------PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA-----VVEEHSEDFRL 865 (1207)
Q Consensus 800 ---------~~t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~l~-----~~~e~~~~fr~ 865 (1207)
.+.+-.+|..|+.+++.+| |+|++|+|++.||||+++.+..+. .|....+ .+++.+++|+.
T Consensus 604 ~~~~~~l~k~~~k~~~l~~~~~~l~~~g----hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~ 678 (696)
T KOG0383|consen 604 EYLGSALIKASGKLTLLLKMLKKLKSSG----HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNA 678 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCC
Confidence 1223345666666666655 999999999999999999998888 7877765 66777777774
Q ss_pred -CCCcceeEEecC
Q 000967 866 -DPLLNIHLHHNL 877 (1207)
Q Consensus 866 -D~~~~lh~~~Nl 877 (1207)
+..+.+.++-+.
T Consensus 679 ~~~~~~cfllstr 691 (696)
T KOG0383|consen 679 PGSNQFCFLLSTR 691 (696)
T ss_pred CCccceEEEeecc
Confidence 334555555443
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=4.8e-23 Score=253.98 Aligned_cols=303 Identities=14% Similarity=0.176 Sum_probs=178.5
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|||||.+. +.||.+||.+|+.-....+..|.|..+.. .....+|+||||+++......... .
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~----------~~~~~~VvVtTYq~l~~~~~r~~~----~ 364 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER----------FHGEAGVVVSTYSMVAHTGKRSYE----S 364 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc----------cccCCcEEEEEHHHhhcccccchh----h
Confidence 47999999874 89999999999743346677888864431 123578999999999864321000 0
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhcc-CCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL-KSSPF 656 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL-~p~~f 656 (1207)
.. ....|....|++||+||+|++.+ ....+.+..+++.+||+|||||++++ +.+..+.|+ +|..|
T Consensus 365 ~~----------~l~~l~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vy 430 (732)
T TIGR00603 365 EK----------VMEWLTNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLY 430 (732)
T ss_pred hH----------HHHHhccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeee
Confidence 00 00124556899999999999964 34445677789999999999999875 445545544 33222
Q ss_pred CChhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000967 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1207)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~ 736 (1207)
. ..|.+.+. .--|.+.....++|+|++.+..-|.....
T Consensus 431 e--~~~~eLi~--------------------------------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~-------- 468 (732)
T TIGR00603 431 E--ANWMELQK--------------------------------KGFIANVQCAEVWCPMTPEFYREYLRENS-------- 468 (732)
T ss_pred e--cCHHHHHh--------------------------------CCccccceEEEEEecCCHHHHHHHHHhcc--------
Confidence 1 11222111 11155666677999999875444421100
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHH
Q 000967 737 VIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKI 816 (1207)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~k~~~ 816 (1207)
+ ....+ +..+|. .-+.+..|+...
T Consensus 469 -----------------------------~--~k~~l--------~~~np~---------------K~~~~~~Li~~h-- 492 (732)
T TIGR00603 469 -----------------------------R--KRMLL--------YVMNPN---------------KFRACQFLIRFH-- 492 (732)
T ss_pred -----------------------------h--hhhHH--------hhhChH---------------HHHHHHHHHHHH--
Confidence 0 00000 111221 113344444322
Q ss_pred hhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCC-cce-----------------eEEecCC
Q 000967 817 EGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-LNI-----------------HLHHNLT 878 (1207)
Q Consensus 817 e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~l~~~~e~~~~fr~D~~-~~l-----------------h~~~Nl~ 878 (1207)
+...+++|||++.+..+..+...+.............|+...+.|+..+. ..| .+.+...
T Consensus 493 --e~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~ 570 (732)
T TIGR00603 493 --EQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 570 (732)
T ss_pred --hhcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCC
Confidence 22458999999999999888887754433333334577888888875432 222 2222222
Q ss_pred CCCccchhhhh-hhhccCCCC-----ceEEEEcccCCcccccchhHhhhhccccccCC
Q 000967 879 EILPMVANCAT-ELSQNEQHF-----PGCSEKAFKIHSIETCDENARKCQRVSREENS 930 (1207)
Q Consensus 879 dwnpa~d~QA~-R~~riGQ~~-----~v~vyRl~t~~tiee~~~~~~k~~~~~~~~~~ 930 (1207)
.-++....|.. |+.|.|..+ +...|.|++.+|.|+..- ...|+-+.++|-+
T Consensus 571 ~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s-~~Rq~fl~~qGY~ 627 (732)
T TIGR00603 571 YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYS-TKRQRFLVDQGYS 627 (732)
T ss_pred CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHH-HHHHHHHHHCCCe
Confidence 12455555554 555555433 367899999999998743 3333445566553
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.79 E-value=4.4e-18 Score=217.79 Aligned_cols=368 Identities=11% Similarity=0.031 Sum_probs=194.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|||||. .++.||..++.+++.....++.+++|..... ........++|+|+|++.+..++..
T Consensus 59 ~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~------~r~~~~~~~~iiv~T~~~l~~~l~~-------- 124 (773)
T PRK13766 59 GKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPE------KRAELWEKAKVIVATPQVIENDLIA-------- 124 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHH------HHHHHHhCCCEEEECHHHHHHHHHc--------
Confidence 579999998 6889999999998753345888888864321 0123345789999999999887531
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHh---ccCeEEEEeccCCCCChhhhHhhhhccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~ 654 (1207)
..+..-.|+.||+||||++.+..+..+-+-... +..+.++|||||.++ ...+..++.-|...
T Consensus 125 --------------~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~ 189 (773)
T PRK13766 125 --------------GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIE 189 (773)
T ss_pred --------------CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCce
Confidence 113334689999999999987654433222222 345689999999876 56666666655543
Q ss_pred CCCChhhhhhhhcCCCC--------CCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000967 655 PFSISRWWIEVIRDPYE--------NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1207)
Q Consensus 655 ~f~~~~~F~~~~~~pi~--------~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1207)
.+.....|...+...+. -.-+..+..++..+..++-++.+...... .+++....+..-.+...++.++..+
T Consensus 190 ~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l 268 (773)
T PRK13766 190 HVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG-VIVSISPDVSKKELLGLQKKLQQEI 268 (773)
T ss_pred EEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCCcCHHHHHHHHHHHHHHh
Confidence 32211111111111000 01234566788888888887776543211 1233322222223333333333332
Q ss_pred HHHHHH--HHHHHH---HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCc----------
Q 000967 727 HETCVG--YAREVI---QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSS---------- 791 (1207)
Q Consensus 727 ~e~~~~--~a~~~~---~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~---------- 791 (1207)
...... .+...+ ..+...+. .+.......+...+.+|+..+.++.....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~----------------~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~ 332 (773)
T PRK13766 269 ANDDSEGYEAISILAEAMKLRHAVE----------------LLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRF 332 (773)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHH----------------HHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHH
Confidence 110000 000000 00000000 00000011222222333322221110000
Q ss_pred -----ccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHH---HHH----------HH
Q 000967 792 -----GLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKE----------AM 853 (1207)
Q Consensus 792 -----~~~~l~~~~~t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~---y~~----------~l 853 (1207)
..... .......+.|..++.....+ ....+++||+++..+.+.|.+.+...... +.+ ..
T Consensus 333 ~~~~~~~~~~-~~~~pK~~~L~~il~~~~~~--~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 333 RKAVRKAKEL-DIEHPKLEKLREIVKEQLGK--NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHhc-ccCChHHHHHHHHHHHHHhc--CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 00000 00112224444444443321 24589999999999999999887443211 111 01
Q ss_pred HHHHHHHhhccCCCC-----------------cceeEEecCCCCCccchhhhhhhhccCCCCceEEEEcccCCcccccch
Q 000967 854 AVVEEHSEDFRLDPL-----------------LNIHLHHNLTEILPMVANCATELSQNEQHFPGCSEKAFKIHSIETCDE 916 (1207)
Q Consensus 854 ~~~~e~~~~fr~D~~-----------------~~lh~~~Nl~dwnpa~d~QA~R~~riGQ~~~v~vyRl~t~~tiee~~~ 916 (1207)
..+.+..++|+.+.. ....+.|+. +|++..-.| |++|+|+..++.+|.|++.+|+||..+
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~-~~s~~r~iQ--R~GR~gR~~~~~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP-VPSEIRSIQ--RKGRTGRQEEGRVVVLIAKGTRDEAYY 486 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC-CCCHHHHHH--HhcccCcCCCCEEEEEEeCCChHHHHH
Confidence 233345555654432 233566665 488876555 888888888899999999999999876
Q ss_pred hH
Q 000967 917 NA 918 (1207)
Q Consensus 917 ~~ 918 (1207)
..
T Consensus 487 ~~ 488 (773)
T PRK13766 487 WS 488 (773)
T ss_pred HH
Confidence 54
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.41 E-value=1.7e-11 Score=147.47 Aligned_cols=298 Identities=16% Similarity=0.081 Sum_probs=172.4
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.+|||||.. |+.||.+.+.+++... -.+..|.|..+.. . ..+|+++||+++.+....
T Consensus 82 ~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~---------~---~~~i~vat~qtl~~~~~l--------- 139 (442)
T COG1061 82 STLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKEL---------E---PAKVTVATVQTLARRQLL--------- 139 (442)
T ss_pred CEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceecc---------C---CCcEEEEEhHHHhhhhhh---------
Confidence 499999986 7799999999988521 2455666654321 1 157999999999985200
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCe-EEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKH-RWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~-RwlLTGTPIqN~l~DL~sLL~FL~p~~f~ 657 (1207)
..+..-.|+.||+||+|++.....+ ..+..+.+.+ +++|||||...+-..+.-++.+++|-
T Consensus 140 -------------~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~--- 201 (442)
T COG1061 140 -------------DEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPI--- 201 (442)
T ss_pred -------------hhhcccccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcCCe---
Confidence 1233347999999999999765432 3344455555 99999999854433444444433321
Q ss_pred ChhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000967 658 ISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREV 737 (1207)
Q Consensus 658 ~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~ 737 (1207)
.......+..++--|.|.....+++.++..+...|...........+.
T Consensus 202 -------------------------------vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~- 249 (442)
T COG1061 202 -------------------------------VYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA- 249 (442)
T ss_pred -------------------------------EeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh-
Confidence 122222222222338888999999999999999998754322111000
Q ss_pred HHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHh
Q 000967 738 IQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIE 817 (1207)
Q Consensus 738 ~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~k~~~e 817 (1207)
+ .. ....-..+.+..+ .. .....+..++.+..
T Consensus 250 ----------~--------------------~~--~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~-- 281 (442)
T COG1061 250 ----------R--------------------GT--LRAENEARRIAIA-------------SE-RKIAAVRGLLLKHA-- 281 (442)
T ss_pred ----------h--------------------hh--hhHHHHHHHHhhc-------------cH-HHHHHHHHHHHHhc--
Confidence 0 00 0000001111110 00 00111222221111
Q ss_pred hhhhcchHHHHHhHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhccCCCCcceeE------EecCC---------
Q 000967 818 GEEALRKLVMALNGLAGIALIEKNLSQA----VSLYKEAMAVVEEHSEDFRLDPLLNIHL------HHNLT--------- 878 (1207)
Q Consensus 818 ~eea~rkvLifsq~la~L~iLe~~l~~a----~~~y~~~l~~~~e~~~~fr~D~~~~lh~------~~Nl~--------- 878 (1207)
...++++|.........|...+... ..........+++..+.|+...+..+.. +.+.-
T Consensus 282 ---~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 ---RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred ---CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC
Confidence 2368889999998888888877665 4444444556777778887755433322 12221
Q ss_pred -CCCccchhhhh-hhhc-cCCCCc--eEEEEcccCCcccccchhHhh
Q 000967 879 -EILPMVANCAT-ELSQ-NEQHFP--GCSEKAFKIHSIETCDENARK 920 (1207)
Q Consensus 879 -dwnpa~d~QA~-R~~r-iGQ~~~--v~vyRl~t~~tiee~~~~~~k 920 (1207)
.=.+....|.. |..| ...+.. +..|=++...+.++.+.....
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 22344566777 9999 555554 667788888888887664433
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.34 E-value=5e-11 Score=145.75 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=69.4
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeE-EEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V-~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
++|||||. .|+.||.++|.+|...+...+ .++.|.... ...+|+|+||+.+.+...
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------------~~~~I~VaT~qsl~~~~~--------- 217 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------------TDAPIVVSTWQSAVKQPK--------- 217 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------------CCCCEEEeeHHHHhhchh---------
Confidence 79999998 588999999999763222333 445554321 347899999999865311
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHh-ccCeEEEEeccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQ 638 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPIq 638 (1207)
..+ -.|++||+||+|++.... ....+..+ ++.++++|||||..
T Consensus 218 --------------~~~--~~~~~iIvDEaH~~~~~~--~~~il~~~~~~~~~lGLTATp~~ 261 (501)
T PHA02558 218 --------------EWF--DQFGMVIVDECHLFTGKS--LTSIITKLDNCKFKFGLTGSLRD 261 (501)
T ss_pred --------------hhc--cccCEEEEEchhcccchh--HHHHHHhhhccceEEEEeccCCC
Confidence 012 257899999999997532 34455566 57899999999954
No 26
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.31 E-value=1.5e-11 Score=128.47 Aligned_cols=124 Identities=26% Similarity=0.291 Sum_probs=72.4
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcC--CCccc-----cccccchhhhhccCCcEEEEehHHHhhhcccCC
Q 000967 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEG--ARNSS-----LSDTSIMDISELVGADIVLTTYDVLKEDLSHDS 571 (1207)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G--~~~~~-----~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~ 571 (1207)
++|||||. +|+.||.++|..+... ...+....- ..... ...............++++++|..+........
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEK 130 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccc
Confidence 79999998 7889999999887752 122211110 00000 000011122345678899999999988653211
Q ss_pred CCcccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCC
Q 000967 572 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1207)
Q Consensus 572 ~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPI 637 (1207)
....... ....+..-.+++||+||||++.+... ++.+....+.+++.|||||.
T Consensus 131 ~~~~~~~-----------~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 131 KIDESAR-----------RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp ------------------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccccchh-----------hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 0000000 01124455788999999999975443 55665688999999999995
No 27
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.29 E-value=1.5e-11 Score=128.39 Aligned_cols=114 Identities=22% Similarity=0.227 Sum_probs=75.8
Q ss_pred CcEEEEeC-CchHHHHHHHHHhcCCCCC-CeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCP-APILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~Ei~k~~~~g~-L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+++|||+| .++..||..++.++.+... .....+.+..... .........++++++||+.+.......
T Consensus 55 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~t~~~l~~~~~~~------ 123 (201)
T smart00487 55 KRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKRE-----QLRKLESGKTDILVTTPGRLLDLLEND------ 123 (201)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHH-----HHHHHhcCCCCEEEeChHHHHHHHHcC------
Confidence 57999999 5678999999999886322 4555666643211 001111223499999999998865421
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCC-hhHHHHH-HHHHh-ccCeEEEEeccCCCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-NAAAATE-MALRL-YAKHRWCITGTPIQR 639 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN-~~Sk~~k-al~~L-~a~~RwlLTGTPIqN 639 (1207)
.+....|+++|+||+|++.+ ....... .+..+ +..+++++||||..+
T Consensus 124 ----------------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 124 ----------------LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred ----------------CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 13445688999999999986 3333333 33444 578899999999644
No 28
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.29 E-value=1.7e-11 Score=120.51 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=76.9
Q ss_pred CcEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++||+||...+ .||..++.++... .+.+.++++....... ........+|+++||+.+.......
T Consensus 31 ~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~i~i~t~~~~~~~~~~~------- 97 (144)
T cd00046 31 GQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQ-----EKLLSGKTDIVVGTPGRLLDELERL------- 97 (144)
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHH-----HHHhcCCCCEEEECcHHHHHHHHcC-------
Confidence 689999999855 5667777777743 4777777775443210 1223467899999999988765320
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHH---HHHHHhccCeEEEEeccC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT---EMALRLYAKHRWCITGTP 636 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~---kal~~L~a~~RwlLTGTP 636 (1207)
.+....|++||+||+|.+.+...... ...........+++||||
T Consensus 98 ---------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 98 ---------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ---------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 13345789999999999988765443 233345678899999999
No 29
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.93 E-value=5.2e-09 Score=137.23 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=66.5
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEE-EEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~-vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+++|+|||.. |+.||.++|..+..+....+. +|.... . .....-....|+|+||.++.+.+......
T Consensus 464 ~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~-L-------~~~~~~~~~~I~iaTiQtl~~~~~~~~~~--- 532 (1123)
T PRK11448 464 RRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKG-L-------EDKFPEDETKVHVATVQGMVKRILYSDDP--- 532 (1123)
T ss_pred CeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhh-h-------hhhcccCCCCEEEEEHHHHHHhhhccccc---
Confidence 5799999965 889999999987542221111 221110 0 01111235789999999997754211000
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh----------------HHHHHHHHHhccCeEEEEeccCCCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA----------------AAATEMALRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~----------------Sk~~kal~~L~a~~RwlLTGTPIqN 639 (1207)
. ..+.--.|++||+||||+.-... -..++.+....-..+++|||||..+
T Consensus 533 --------~------~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~ 597 (1123)
T PRK11448 533 --------M------DKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALH 597 (1123)
T ss_pred --------c------ccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccc
Confidence 0 00222468899999999953100 1233333332224789999999854
No 30
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.91 E-value=1e-07 Score=111.96 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=89.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+..|+++|+ .|+.|=..-+.+.+.-+.-.+..+.|.-... .....+.+..|++.|-.++.+|+..
T Consensus 59 ~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~------~R~~~w~~~kVfvaTPQvveNDl~~-------- 124 (542)
T COG1111 59 GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPE------EREELWAKKKVFVATPQVVENDLKA-------- 124 (542)
T ss_pred CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChH------HHHHHHhhCCEEEeccHHHHhHHhc--------
Confidence 469999996 6999999999999865567788899964321 1345567889999999999999743
Q ss_pred hhhhhhcccCCCccccccccccceeeccCcccc-CChh-HHHHHHHHHhccC-eEEEEeccCCCCChhhhHhhhhccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV-ESNA-AAATEMALRLYAK-HRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I-KN~~-Sk~~kal~~L~a~-~RwlLTGTPIqN~l~DL~sLL~FL~p~ 654 (1207)
..+..-.+.++|+||||+- .|.. ...++...+-... +.++||+||= ++++.+...++=|+.+
T Consensus 125 --------------Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe 189 (542)
T COG1111 125 --------------GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIE 189 (542)
T ss_pred --------------CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcc
Confidence 1244456789999999995 4432 3333333333333 6889999995 4556666666666654
Q ss_pred C
Q 000967 655 P 655 (1207)
Q Consensus 655 ~ 655 (1207)
.
T Consensus 190 ~ 190 (542)
T COG1111 190 K 190 (542)
T ss_pred e
Confidence 3
No 31
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.85 E-value=3.5e-09 Score=122.32 Aligned_cols=125 Identities=22% Similarity=0.386 Sum_probs=86.5
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+||+|-+++ +.||...|..|..-..-.+..+....+.++ -..++||||||.++..--.. ....
T Consensus 346 K~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~----------~~~~gvvvsTYsMva~t~kR----S~ea 411 (776)
T KOG1123|consen 346 KSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERF----------PSGAGVVVTTYSMVAYTGKR----SHEA 411 (776)
T ss_pred ccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccC----------CCCCcEEEEeeehhhhcccc----cHHH
Confidence 57899999875 799999999998655556777777655432 24578999999998753211 1111
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCC--ChhhhHhhhhccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR--KLDDLYGLLRFLKS 653 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN--~l~DL~sLL~FL~p 653 (1207)
.. +-..|....|..+||||.|.+- .....+.+.-+.+..++.||+|-+.. .+.| |+||-.
T Consensus 412 ek----------~m~~l~~~EWGllllDEVHvvP--A~MFRRVlsiv~aHcKLGLTATLvREDdKI~D----LNFLIG 473 (776)
T KOG1123|consen 412 EK----------IMDFLRGREWGLLLLDEVHVVP--AKMFRRVLSIVQAHCKLGLTATLVREDDKITD----LNFLIG 473 (776)
T ss_pred HH----------HHHHHhcCeeeeEEeehhccch--HHHHHHHHHHHHHHhhccceeEEeeccccccc----cceeec
Confidence 11 1135778899999999999983 33333444456888999999998864 3444 466643
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.70 E-value=1.7e-07 Score=100.64 Aligned_cols=111 Identities=21% Similarity=0.176 Sum_probs=75.7
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhc-cCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+|||+|.. ++.||...+.++.....+++..++|...... ....+ ...+|+|+|.+.+...+...
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~iiv~T~~~l~~~l~~~------ 137 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDK------QIRKLKRGPHIVVATPGRLLDLLERG------ 137 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEEChHHHHHHHHcC------
Confidence 4699999975 7899999999987656788888888654311 11222 47899999999887654321
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh-HHHH-HHHHHhc-cCeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAAT-EMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~-kal~~L~-a~~RwlLTGTPI 637 (1207)
.+.--.++++|+||+|.+.+.. .... ..+..+. ....+++|+||-
T Consensus 138 ----------------~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 138 ----------------KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ----------------CCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 1122346789999999976543 2222 2333444 466899999998
No 33
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.62 E-value=1.9e-07 Score=117.99 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=65.1
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.++|||||.. |..||.++|.++... .. .+..... .......-...+|+|||+.++.+.....
T Consensus 294 ~~vl~lvdR~~L~~Q~~~~f~~~~~~-~~-----~~~~s~~----~L~~~l~~~~~~iivtTiQk~~~~~~~~------- 356 (667)
T TIGR00348 294 PKVFFVVDRRELDYQLMKEFQSLQKD-CA-----ERIESIA----ELKRLLEKDDGGIIITTIQKFDKKLKEE------- 356 (667)
T ss_pred CeEEEEECcHHHHHHHHHHHHhhCCC-CC-----cccCCHH----HHHHHHhCCCCCEEEEEhHHhhhhHhhh-------
Confidence 4799999975 889999999998641 11 1111000 0001111124679999999998632110
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHH-HHhccCeEEEEeccCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal-~~L~a~~RwlLTGTPIqN 639 (1207)
...+ .......+||+||||+.... ...+.+ ..++...++++||||+..
T Consensus 357 ------~~~~------~~~~~~~lvIvDEaHrs~~~--~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 357 ------EEKF------PVDRKEVVVIFDEAHRSQYG--ELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred ------hhcc------CCCCCCEEEEEEcCccccch--HHHHHHHhhCCCCcEEEEeCCCccc
Confidence 0000 01112237999999987532 233444 356778999999999864
No 34
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.57 E-value=3.3e-07 Score=115.34 Aligned_cols=112 Identities=13% Similarity=0.225 Sum_probs=74.3
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.+||++|.. |..||.+++.+++++-++++.+++|........ ...........+|||.|...+...+.
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~-~~~~~i~~g~~~IiVgT~~ll~~~~~---------- 354 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRK-ELLETIASGQIHLVVGTHALIQEKVE---------- 354 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHH-HHHHHHhCCCCCEEEecHHHHhcccc----------
Confidence 589999986 558999999999875468999999875432100 00111122467999999988764321
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhc---cCeEEEEeccCCCCCh
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY---AKHRWCITGTPIQRKL 641 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~---a~~RwlLTGTPIqN~l 641 (1207)
+. ...+||+||+|++.- .+......... ..+.+++|+||+...+
T Consensus 355 ---------------~~--~l~lvVIDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 355 ---------------FK--RLALVIIDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred ---------------cc--ccceEEEechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHH
Confidence 22 356899999999742 22222222333 5679999999987544
No 35
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.50 E-value=5.3e-07 Score=93.35 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=78.5
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhh-ccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+.+||++|.. ++.|=.+++.++.....+++..++|...... ..... ....+|+|+|++.|...+...
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ilv~T~~~l~~~~~~~------ 113 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISE-----DQREVLSNQADILVTTPEQLLDLISNG------ 113 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHH-----HHHHHHHTTSSEEEEEHHHHHHHHHTT------
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccc-----cccccccccccccccCcchhhcccccc------
Confidence 3799999974 8889999999998755678888877543210 01122 246999999999998865420
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCCh-hHH-HHHHHHHh---ccCeEEEEeccCCCCChhhh
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAA-ATEMALRL---YAKHRWCITGTPIQRKLDDL 644 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~Sk-~~kal~~L---~a~~RwlLTGTPIqN~l~DL 644 (1207)
.+.-....+||+||+|.+-.. ... ....+..+ ...+.+++|+||- .++++|
T Consensus 114 ----------------~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~~ 169 (169)
T PF00270_consen 114 ----------------KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEKL 169 (169)
T ss_dssp ----------------SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHHH
T ss_pred ----------------ccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhhC
Confidence 011123688999999998663 222 33333333 2367999999998 666543
No 36
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.45 E-value=2e-05 Score=97.84 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=82.4
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+++.+|.. |+.|=..++.....+ -.+....|....+.. ........+|++.|-.++.+++....
T Consensus 107 ~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~-----r~~i~~s~~vff~TpQil~ndL~~~~------ 173 (746)
T KOG0354|consen 107 GKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSN-----RGEIVASKRVFFRTPQILENDLKSGL------ 173 (746)
T ss_pred ceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCc-----hhhhhcccceEEeChHhhhhhccccc------
Confidence 6899999985 677767888888753 555555555332211 23455678999999999999885311
Q ss_pred hhhhhhcccCCCcccccc-ccccceeeccCcccc-CChh-HHHHHHHHHhc--cCeEEEEeccCCCCChhhhHhhhhccC
Q 000967 578 RRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMV-ESNA-AAATEMALRLY--AKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~-~i~w~rVILDEAH~I-KN~~-Sk~~kal~~L~--a~~RwlLTGTPIqN~l~DL~sLL~FL~ 652 (1207)
.. --.|-++|+||||+- ||.. +...+....++ ....++||+||= ++.++..+.+.=|.
T Consensus 174 ----------------~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~ 236 (746)
T KOG0354|consen 174 ----------------HDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLC 236 (746)
T ss_pred ----------------ccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhh
Confidence 11 135789999999985 4433 55555555544 336789999998 66666655544443
No 37
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.43 E-value=2.2e-06 Score=96.76 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=89.4
Q ss_pred CCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccc-ccc------ceeeccCccccCChhH------HHH
Q 000967 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTR-IFW------WRICLDEAQMVESNAA------AAT 618 (1207)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~-i~w------~rVILDEAH~IKN~~S------k~~ 618 (1207)
+.+|+.+||.+|......... .. +-|.+ +.| .+||+||+|..||..+ ++.
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~------~~-----------sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g 198 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGK------YR-----------SRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTG 198 (303)
T ss_pred CCCccchhHHHHHhHHhccCC------cc-----------chHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHH
Confidence 467999999999987431000 00 11222 123 3799999999999764 666
Q ss_pred HHHHHh----ccCeEEEEeccCCCCChhhhHhhhhccCCC------CCCChhhhhhhhcCCCCCCCcchHHHHHHHHH--
Q 000967 619 EMALRL----YAKHRWCITGTPIQRKLDDLYGLLRFLKSS------PFSISRWWIEVIRDPYENGDVGAMEFTHKFFK-- 686 (1207)
Q Consensus 619 kal~~L----~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~------~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~-- 686 (1207)
.++..| +.-+.+-.|+|.... +..|- + +-+.+ +|.+...|...+ +++...+++.+..-|+
T Consensus 199 ~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Y--m~RLGLWG~gtpf~~~~~f~~a~----~~gGv~amE~vA~dlKa~ 270 (303)
T PF13872_consen 199 IAVLELQNRLPNARVVYASATGASE-PRNMA-Y--MSRLGLWGPGTPFPDFDDFLEAM----EKGGVGAMEMVAMDLKAR 270 (303)
T ss_pred HHHHHHHHhCCCCcEEEecccccCC-Cceee-e--eeeccccCCCCCCCCHHHHHHHH----HhcCchHHHHHHHHHHhc
Confidence 676655 334577899998743 33331 1 22223 355555555544 3455666666655444
Q ss_pred hHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHH
Q 000967 687 EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQS 725 (1207)
Q Consensus 687 ~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~ 725 (1207)
..+++|. ++.-.-...++.++||+.|.++|+.
T Consensus 271 G~yiaR~-------LSf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 271 GMYIARQ-------LSFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred chheeee-------cccCCceEEEEEecCCHHHHHHhcC
Confidence 3566664 4466667889999999999999984
No 38
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.35 E-value=1.8e-06 Score=109.72 Aligned_cols=111 Identities=18% Similarity=0.263 Sum_probs=73.4
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.+||++|+. |..|+.+.+.+++++-++++.+++|........ ...........+|||.|...+...+.
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~-~~~~~l~~g~~~IvVgT~~ll~~~v~---------- 380 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERR-EILEAIASGEADIVIGTHALIQDDVE---------- 380 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHH-HHHHHHhCCCCCEEEchHHHhcccch----------
Confidence 589999986 568999999999875468999999975421100 00011122368999999988754321
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHh-ccCeEEEEeccCCCCCh
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRKL 641 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPIqN~l 641 (1207)
+. +..+||+||+|++. ......+... ...+.+++|+||++..+
T Consensus 381 ---------------~~--~l~lvVIDE~Hrfg---~~qr~~l~~~~~~~~iL~~SATp~prtl 424 (681)
T PRK10917 381 ---------------FH--NLGLVIIDEQHRFG---VEQRLALREKGENPHVLVMTATPIPRTL 424 (681)
T ss_pred ---------------hc--ccceEEEechhhhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHH
Confidence 22 34679999999983 2223333333 24678999999987543
No 39
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.26 E-value=7.1e-06 Score=98.93 Aligned_cols=119 Identities=17% Similarity=0.083 Sum_probs=74.6
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+||++|.. |..|+.+.+..+.....+++..+.|...... .........+|+|+|.+.|...+..
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~-----~~~~l~~~~~IlV~Tp~rl~~~~~~-------- 140 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMN-----HAEVFSENQDIVVATPGRLLQYIKE-------- 140 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH-----HHHHhcCCCCEEEEChHHHHHHHHc--------
Confidence 4689999986 7789888887776544688888888543210 0111224679999999988765431
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh-HH-HHHHHHHhc-cCeEEEEeccCCCCChhhh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AA-ATEMALRLY-AKHRWCITGTPIQRKLDDL 644 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk-~~kal~~L~-a~~RwlLTGTPIqN~l~DL 644 (1207)
..+..-...+||+||||++-... .. ....+..+. ....+++|+|+-...+.++
T Consensus 141 --------------~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~ 196 (434)
T PRK11192 141 --------------ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDF 196 (434)
T ss_pred --------------CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHH
Confidence 01222346789999999875432 22 222222332 2456899999864444443
No 40
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.25 E-value=5.6e-06 Score=109.63 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=72.8
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+||+||+.. ..|..+.|.+.+..-.+++.++.|....... ............||||+|++.+...+.
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL~~~v~--------- 719 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLLQSDVK--------- 719 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHHhCCCC---------
Confidence 46999999974 5799999988665334677777775432110 000001112467999999987764321
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhc-cCeEEEEeccCCCCChh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLD 642 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGTPIqN~l~ 642 (1207)
+ -+..+||+||+|++.-. ....++.++ ....+++|+||+++.+.
T Consensus 720 ----------------~--~~L~lLVIDEahrfG~~---~~e~lk~l~~~~qvLl~SATpiprtl~ 764 (1147)
T PRK10689 720 ----------------W--KDLGLLIVDEEHRFGVR---HKERIKAMRADVDILTLTATPIPRTLN 764 (1147)
T ss_pred ----------------H--hhCCEEEEechhhcchh---HHHHHHhcCCCCcEEEEcCCCCHHHHH
Confidence 1 24678999999998432 234445554 45789999999987643
No 41
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.24 E-value=3.7e-06 Score=104.00 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=69.0
Q ss_pred CcEEEEeC-CchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P-~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|.++- .+|+.|=..++..|.|.++.. ....+.. ....+.|.|.||.++........+
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~-n~i~~~~-------------~~~s~~i~lsTyqt~~~~~~~~~~----- 276 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFLPFGTKM-NKIEDKK-------------GDTSSEIYLSTYQTMTGRIEQKED----- 276 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhCCCccce-eeeeccc-------------CCcceeEEEeehHHHHhhhhcccc-----
Confidence 67899996 578899999999999843322 2222211 112688999999999987643110
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccc-cCChhHHHHHHHHHhccCeEEEEeccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM-VESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~-IKN~~Sk~~kal~~L~a~~RwlLTGTPIq 638 (1207)
...++..-+||+||+||||+ +-+.. +.+...-...+.+||+||-.
T Consensus 277 ------------~~~~f~~g~FDlIvIDEaHRgi~~~~----~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 277 ------------EYRRFGPGFFDLIVIDEAHRGIYSEW----SSILDYFDAATQGLTATPKE 322 (875)
T ss_pred ------------ccccCCCCceeEEEechhhhhHHhhh----HHHHHHHHHHHHhhccCccc
Confidence 01235667899999999998 33222 23333334456677999977
No 42
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.24 E-value=6.1e-06 Score=107.11 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=72.8
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhh--ccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE--LVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~--l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
..+||+||+. |..|....|.+++..-.+++.+++|...... ....... ....||||+|...+.+.+.
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e---~~~~~~~l~~g~~dIVIGTp~ll~~~v~------- 570 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKE---QNEILKELASGKIDILIGTHKLLQKDVK------- 570 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHH---HHHHHHHHHcCCceEEEchHHHhhCCCC-------
Confidence 3589999997 5689999999987644577777877533110 0001112 2358999999977654321
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhc-cCeEEEEeccCCCCChh
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-AKHRWCITGTPIQRKLD 642 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a~~RwlLTGTPIqN~l~ 642 (1207)
+. +..+||+||+|++.- .....+..+. ....+++|+||++..+.
T Consensus 571 ------------------f~--~L~llVIDEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 571 ------------------FK--DLGLLIIDEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTLH 615 (926)
T ss_pred ------------------cc--cCCEEEeecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHHH
Confidence 22 346899999999742 2334455554 45789999999876543
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=98.23 E-value=1.1e-05 Score=102.72 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=74.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+++|+|. +|..|+.+++.++.. -+.++..+.|.... ....+..+||+|+|++.+..-+.+.
T Consensus 66 ~k~v~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~--------~~~~~~~~dIiv~Tpek~~~l~~~~------- 129 (674)
T PRK01172 66 LKSIYIVPLRSLAMEKYEELSRLRS-LGMRVKISIGDYDD--------PPDFIKRYDVVILTSEKADSLIHHD------- 129 (674)
T ss_pred CcEEEEechHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCC--------ChhhhccCCEEEECHHHHHHHHhCC-------
Confidence 367999997 588999999988653 25778777775432 2233467899999999876543210
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHH-HHH---hc-cCeEEEEeccCCCCChhhhHhhhhcc
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEM-ALR---LY-AKHRWCITGTPIQRKLDDLYGLLRFL 651 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~ka-l~~---L~-a~~RwlLTGTPIqN~l~DL~sLL~FL 651 (1207)
+..--...+||+||+|++.... ...... +.. +. ....+++|+|+- +..++- .|+
T Consensus 130 ---------------~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la---~wl 189 (674)
T PRK01172 130 ---------------PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELA---QWL 189 (674)
T ss_pred ---------------hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH---HHh
Confidence 0111245789999999996432 222222 222 22 345789999973 345543 445
Q ss_pred CCC
Q 000967 652 KSS 654 (1207)
Q Consensus 652 ~p~ 654 (1207)
+..
T Consensus 190 ~~~ 192 (674)
T PRK01172 190 NAS 192 (674)
T ss_pred CCC
Confidence 443
No 44
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=6.4e-06 Score=100.48 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=79.9
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||+|. +|+.||...+... .+.+..+.|....... ...........++|+++|.+.+......
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~-~~i~~~~~~~~~~il~~TPe~l~~~~~~-------- 118 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQ-KNVLTDLKDGKIKLLYVTPEKCSASNRL-------- 118 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHcCchhH--------
Confidence 468999998 5778899988764 4666666665432100 0000111235689999999998653210
Q ss_pred hhhhhhcccCCCccccc-cccccceeeccCccccCChhH---HHHH----HHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 000967 578 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAA---AATE----MALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~~S---k~~k----al~~L~a~~RwlLTGTPIqN~l~DL~sLL~ 649 (1207)
. ..+ ......+||+||||.+-.... ..+. ....++....+++||||-.....|+...+.
T Consensus 119 ---~----------~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 119 ---L----------QTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred ---H----------HHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcC
Confidence 0 012 334678999999999864321 1122 222345567899999998877778777666
Q ss_pred ccCC
Q 000967 650 FLKS 653 (1207)
Q Consensus 650 FL~p 653 (1207)
+-.|
T Consensus 186 l~~~ 189 (470)
T TIGR00614 186 LKNP 189 (470)
T ss_pred CCCC
Confidence 5444
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=98.18 E-value=2e-05 Score=101.35 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=75.6
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|+|+|. +|+.|+..++.++.+ -++++.++.|.... ....+..+||+|+|++.+..-+.+.
T Consensus 68 ~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~--------~~~~l~~~~IiV~Tpek~~~llr~~------- 131 (737)
T PRK02362 68 GKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDS--------RDEWLGDNDIIVATSEKVDSLLRNG------- 131 (737)
T ss_pred CcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCc--------cccccCCCCEEEECHHHHHHHHhcC-------
Confidence 469999997 588999999998753 26889999986432 1233467899999999876543210
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHH-HHHh----ccCeEEEEeccCCCCChhhhHh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEM-ALRL----YAKHRWCITGTPIQRKLDDLYG 646 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~ka-l~~L----~a~~RwlLTGTPIqN~l~DL~s 646 (1207)
...+ -...+||+||+|++.+.. ...... +.++ .....++||+|+- +..|+..
T Consensus 132 -------------~~~l--~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~ 189 (737)
T PRK02362 132 -------------APWL--DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELAD 189 (737)
T ss_pred -------------hhhh--hhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHH
Confidence 0011 135799999999997532 222222 2333 2346789999963 4556544
No 46
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.17 E-value=1.6e-05 Score=96.65 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=70.8
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.+|||||.- |..||.+++.++...-.+++....|...... ........+||+|+|.+.|......
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~-----~~~~l~~~~~IiV~TP~rL~~~~~~--------- 142 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINP-----QMMKLRGGVDVLVATPGRLLDLEHQ--------- 142 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHH-----HHHHHcCCCcEEEEChHHHHHHHHc---------
Confidence 589999985 7789999999887544577766666533210 0111234689999999998764321
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhcc-CeEEEEeccCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPI 637 (1207)
..+.--..++||+||||++-... ......+..+.. ...+++|+|+-
T Consensus 143 -------------~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 143 -------------NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred -------------CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc
Confidence 01222346789999999875433 222333444543 34789999964
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=98.09 E-value=3.6e-05 Score=98.73 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=75.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|+|+|. .|+.|+.+++.+|.. -++++..++|.... ....+..+||+|+|++.+..-+.+.
T Consensus 69 ~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~--------~~~~~~~~~IiV~Tpe~~~~ll~~~------- 132 (720)
T PRK00254 69 GKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDS--------TDEWLGKYDIIIATAEKFDSLLRHG------- 132 (720)
T ss_pred CeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCC--------chhhhccCCEEEEcHHHHHHHHhCC-------
Confidence 468999997 578999999987643 35888889886432 1223467899999999876543210
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHhc-cCeEEEEeccCCCCChhhhHh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYG 646 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPIqN~l~DL~s 646 (1207)
. ..+ -...+||+||+|.+... .......+..+. ....+++|+|+- +..|+-.
T Consensus 133 -------~------~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 133 -------S------SWI--KDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred -------c------hhh--hcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH
Confidence 0 012 24578999999999643 233333444443 456788999973 3566554
No 48
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.09 E-value=2.3e-05 Score=95.32 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=71.6
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCC-CCCeEEEEcCCCccccccccchhhhh-ccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
.+||+||.- |..||.++++++... ..+++..++|...... .... ....+|+|+|.+.+...+..
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~------~~~~l~~~~~IvV~Tp~rl~~~l~~------- 140 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGP------QIDSLEHGAHIIVGTPGRILDHLRK------- 140 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHH------HHHHhcCCCCEEEEChHHHHHHHHc-------
Confidence 489999985 778999999887531 2578888877543211 1111 24579999999998775431
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
..+.--.+.+||+||||.+-+.. ......+..++ ....+++|+|+.
T Consensus 141 ---------------~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 141 ---------------GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred ---------------CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc
Confidence 01222356789999999875432 23334444444 345789999974
No 49
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.07 E-value=2.4e-05 Score=99.82 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=82.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
++.+-|||. +|..+=..||.+|-. -+++|.+++|.... ....+..+||+||||+.+-.-..+.
T Consensus 77 ~k~vYivPlkALa~Ek~~~~~~~~~-~GirV~~~TgD~~~--------~~~~l~~~~ViVtT~EK~Dsl~R~~------- 140 (766)
T COG1204 77 GKVVYIVPLKALAEEKYEEFSRLEE-LGIRVGISTGDYDL--------DDERLARYDVIVTTPEKLDSLTRKR------- 140 (766)
T ss_pred CcEEEEeChHHHHHHHHHHhhhHHh-cCCEEEEecCCccc--------chhhhccCCEEEEchHHhhHhhhcC-------
Confidence 578999996 688888888884432 37999999998654 4567899999999999886544321
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh-h-----HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhcc
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-A-----AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFL 651 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~-----Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL 651 (1207)
+......+.||+||+|++... . +-.+++...-...+-++||+| ++ |.+| +-.||
T Consensus 141 ---------------~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSAT-lp-N~~e---vA~wL 200 (766)
T COG1204 141 ---------------PSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSAT-LP-NAEE---VADWL 200 (766)
T ss_pred ---------------cchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeee-cC-CHHH---HHHHh
Confidence 123345678999999999877 3 233333222222467889999 22 3444 44566
Q ss_pred CCCCC
Q 000967 652 KSSPF 656 (1207)
Q Consensus 652 ~p~~f 656 (1207)
+..++
T Consensus 201 ~a~~~ 205 (766)
T COG1204 201 NAKLV 205 (766)
T ss_pred CCccc
Confidence 65543
No 50
>PTZ00110 helicase; Provisional
Probab=98.04 E-value=3.3e-05 Score=95.93 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=70.0
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.+|||||.- |..|+.+++.++.....+++.+..|...... .........+|+|+|.+.|...+...
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~-----q~~~l~~~~~IlVaTPgrL~d~l~~~-------- 271 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRG-----QIYALRRGVEILIACPGRLIDFLESN-------- 271 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHH-----HHHHHHcCCCEEEECHHHHHHHHHcC--------
Confidence 489999985 7789999999988654566665555432210 01112245799999999887654310
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTP 636 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTP 636 (1207)
.+.--...+||+||||++-... -+..+.+..+. ....+++|+|.
T Consensus 272 --------------~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 272 --------------VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW 318 (545)
T ss_pred --------------CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 1112246789999999876543 23334444453 34568899995
No 51
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.03 E-value=3e-05 Score=97.31 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=80.9
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||+|. +|+.++...+... ++.+..+++....... ...........++|+++|.+.+....-
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~l~~~~~~il~~tpe~l~~~~~--------- 119 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQ-QDIEKALVNGELKLLYVAPERLEQDYF--------- 119 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH-HHHHHHHhCCCCCEEEEChhHhcChHH---------
Confidence 468999997 5888999998874 4667777765332100 000111223568999999998865321
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhc
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~F 650 (1207)
...+......+||+||||.+.... .+.......++....+++|+|+......|+...+.+
T Consensus 120 -------------~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~ 186 (591)
T TIGR01389 120 -------------LNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRL 186 (591)
T ss_pred -------------HHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 012445578899999999985422 122233334445569999999988877787776654
Q ss_pred cC
Q 000967 651 LK 652 (1207)
Q Consensus 651 L~ 652 (1207)
-.
T Consensus 187 ~~ 188 (591)
T TIGR01389 187 AD 188 (591)
T ss_pred CC
Confidence 43
No 52
>PTZ00424 helicase 45; Provisional
Probab=98.03 E-value=4.1e-05 Score=91.11 Aligned_cols=111 Identities=16% Similarity=0.078 Sum_probs=69.4
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhh-ccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+|||+|.. |..|+.+.+..+.....+.+....|..... ..... ....+|+|+|.+.+...+...
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~Ivv~Tp~~l~~~l~~~------ 164 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVR------DDINKLKAGVHMVVGTPGRVYDMIDKR------ 164 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHH------HHHHHHcCCCCEEEECcHHHHHHHHhC------
Confidence 4689999975 778888888877653345555555543211 01112 234689999999887644210
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhcc-CeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPI 637 (1207)
.+.--.+++||+||+|.+.... ......+..+.. ...+++|+|+.
T Consensus 165 ----------------~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 165 ----------------HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred ----------------CcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 1222356789999999875432 344555555543 46788999964
No 53
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.02 E-value=4.1e-05 Score=94.61 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=70.7
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhh-ccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+|||+|.. |..|+.+++..+...-.+++..+.|...... .... ....+|+|+|.+.|..-+...
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~------q~~~l~~~~~IiV~TPgrL~~~l~~~------ 264 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQ------QLYRIQQGVELIVGTPGRLIDLLSKH------ 264 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHH------HHHHhcCCCCEEEECHHHHHHHHHcC------
Confidence 4689999985 7789999998887533455554444322110 1111 245799999999887654310
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhccCeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~~RwlLTGTPI 637 (1207)
.+.--...+||+||||++-... ....+.+..+.....+++|+|.-
T Consensus 265 ----------------~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 265 ----------------DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred ----------------CccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 0111234679999999875432 34445555666778899999964
No 54
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.01 E-value=3.6e-05 Score=96.78 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=78.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||+|. +|+.||.+.+... .+.+..+++....... ............+++++|.+.+..+..
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~--------- 131 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNF--------- 131 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHH---------
Confidence 468999997 5778899888765 3566666654322100 000011122457899999998765310
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh---HHHHHHHH----HhccCeEEEEeccCCCCChhhhHhhhhc
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~---Sk~~kal~----~L~a~~RwlLTGTPIqN~l~DL~sLL~F 650 (1207)
...+......+||+||||.+-... ...++.+. .++....+++|+|+-.....++...+.+
T Consensus 132 -------------~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l 198 (607)
T PRK11057 132 -------------LEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL 198 (607)
T ss_pred -------------HHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCC
Confidence 012344467899999999986432 11222232 2345668999999988877777776654
Q ss_pred cCC
Q 000967 651 LKS 653 (1207)
Q Consensus 651 L~p 653 (1207)
-.|
T Consensus 199 ~~~ 201 (607)
T PRK11057 199 NDP 201 (607)
T ss_pred CCe
Confidence 443
No 55
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.96 E-value=7.1e-05 Score=90.09 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=71.1
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhc-cCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+||+||.. |..||.+++.++...-++++..+.|...... ....+ ...||+|+|.+.+...+..
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~------~~~~l~~~~~IlV~TP~~l~~~l~~------- 150 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK------QLKVLESGVDILIGTTGRLIDYAKQ------- 150 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHhcCCCCEEEECHHHHHHHHHc-------
Confidence 3689999985 7789999988876544688888777543211 11112 3479999999998765421
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhcc---CeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA---KHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a---~~RwlLTGTPI 637 (1207)
..+.--...+||+||||++-... ......+..+.. ...+++|+|+-
T Consensus 151 ---------------~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 151 ---------------NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred ---------------CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCC
Confidence 01222356789999999875433 222233334432 23578899964
No 56
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.90 E-value=0.0001 Score=90.07 Aligned_cols=113 Identities=15% Similarity=0.112 Sum_probs=70.9
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||+|.. |..||.+++..+...-++++..++|....... .........+|+|+|.+.|.......
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~----~~~~~~~~~~Iiv~TP~~Ll~~~~~~------- 231 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ----LKQLEARFCDILVATPGRLLDFNQRG------- 231 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH----HHHHhCCCCCEEEECHHHHHHHHHcC-------
Confidence 4689999985 77899999888765446788888876432100 01111245799999999986532210
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc---cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~---a~~RwlLTGTPI 637 (1207)
.+.--...+||+||+|.+.+.. ....+.+..+. ....+++|+|..
T Consensus 232 ---------------~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 232 ---------------EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred ---------------CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 0112245689999999986543 22333333332 245789999954
No 57
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.87 E-value=0.00012 Score=91.50 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=71.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhh-ccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISE-LVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~-l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+|||+|.- |..|+.+++.++...-.+++..++|...... .... ....||||+|.+.|...+...
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~------q~~~l~~~~dIiV~TP~rL~~~l~~~------ 152 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDK------QRELLQQGVDVIIATPGRLIDYVKQH------ 152 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH------HHHHHhCCCCEEEECHHHHHHHHHhc------
Confidence 4699999985 7789999999987655678888777543210 1111 235799999999887654210
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc---cCeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY---AKHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~---a~~RwlLTGTPI 637 (1207)
..+......+|||||||.+-... ......+..+. ....+++|+|.-
T Consensus 153 ---------------~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~ 203 (572)
T PRK04537 153 ---------------KVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS 203 (572)
T ss_pred ---------------cccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc
Confidence 00112235679999999875432 22233334444 345788999964
No 58
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.80 E-value=0.00018 Score=90.58 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=68.9
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCC-CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.+||+||.. |..||.+++.++... ..+++..++|...... .........+|||+|.+.+...+..
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~-----q~~~l~~~~~IVVgTPgrl~d~l~r-------- 142 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV-----QLRALRQGPQIVVGTPGRLLDHLKR-------- 142 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH-----HHHHhcCCCCEEEECHHHHHHHHHc--------
Confidence 589999985 778999998876531 2577777666533210 0111123578999999998765431
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhcc-CeEEEEeccC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTP 636 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTP 636 (1207)
..+.--...+|||||||.+-+.. ......+..++. ...+++|+|.
T Consensus 143 --------------~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 143 --------------GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 (629)
T ss_pred --------------CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccC
Confidence 01222245679999999764432 233444555654 4468899995
No 59
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.76 E-value=0.00011 Score=94.93 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=73.3
Q ss_pred CcEEEEeCCchH-HHHHHHHHhcCCC--CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 499 GATLIVCPAPIL-AQWDAEITRHTRP--GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 499 ~~tLIV~P~SLl-~QW~~Ei~k~~~~--g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
...|+|-|..-+ ..=.+.+.++... +.+++.+|+|....... ....-...+|+||||+||-..+-...+
T Consensus 116 a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r-----~~~~~~pp~IllTNpdMLh~~llr~~~--- 187 (851)
T COG1205 116 ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEER-----RAIIRNPPDILLTNPDMLHYLLLRNHD--- 187 (851)
T ss_pred ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHH-----HHHHhCCCCEEEeCHHHHHHHhccCcc---
Confidence 378999998755 3335556666542 25789999998654211 122345689999999999874421111
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHHHHHhccC--------eEEEEecc
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAK--------HRWCITGT 635 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~a~--------~RwlLTGT 635 (1207)
++ ....-++.+||+||+|..+... |..+-.+++|.-. .-++.|+|
T Consensus 188 ----------~~-----~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT 241 (851)
T COG1205 188 ----------AW-----LWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSAT 241 (851)
T ss_pred ----------hH-----HHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 00 1122238899999999987654 7777777776432 34778887
No 60
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.74 E-value=9.6e-05 Score=90.76 Aligned_cols=112 Identities=18% Similarity=0.243 Sum_probs=80.7
Q ss_pred cEEEEeCCchH-HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAPIL-AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~SLl-~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
-+...+|+.++ .|=...+.+|+++-+++|....|.-+..... .....-.-+..||||=|...+...+..
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~-~~l~~l~~G~~~ivVGTHALiQd~V~F--------- 382 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARK-EILEQLASGEIDIVVGTHALIQDKVEF--------- 382 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHH-HHHHHHhCCCCCEEEEcchhhhcceee---------
Confidence 36778999877 6999999999998789999999975432111 111222335689999999988876532
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHh-c-cCeEEEEeccCCCCChh
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-Y-AKHRWCITGTPIQRKLD 642 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~-a~~RwlLTGTPIqN~l~ 642 (1207)
.+..+||+||=|+.. ..+...+..- . ..|-+++|+|||+.++.
T Consensus 383 ------------------~~LgLVIiDEQHRFG---V~QR~~L~~KG~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 383 ------------------HNLGLVIIDEQHRFG---VHQRLALREKGEQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred ------------------cceeEEEEecccccc---HHHHHHHHHhCCCCCcEEEEeCCCchHHHH
Confidence 134689999999995 3444444443 3 47999999999999874
No 61
>PRK09401 reverse gyrase; Reviewed
Probab=97.73 E-value=0.00024 Score=94.82 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=57.0
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhc--cCCcEEEEehHHHhhhcccCCCCcc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
..+|||+|+. |+.||.+.+.++.....+.+.+..|......... ......+ ..++|+|+|.+.|...+.
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek-~~~~~~l~~~~~~IlV~Tp~rL~~~~~------- 195 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEK-EEFLERLKEGDFDILVTTSQFLSKNFD------- 195 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHH-HHHHHHHhcCCCCEEEECHHHHHHHHH-------
Confidence 4689999985 7789999999988644555554444321100000 0011112 458999999999887542
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccC
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1207)
.+....++.||+||||++-
T Consensus 196 -----------------~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 196 -----------------ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred -----------------hccccccCEEEEEChHHhh
Confidence 1334458899999999864
No 62
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.70 E-value=0.00025 Score=90.24 Aligned_cols=107 Identities=12% Similarity=0.009 Sum_probs=65.7
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+||++|.. |..||.+.+.+++ ..++.+++|........ ...........+|||.|.+.+-.
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~-~~~~~~~~g~~~IVVgTrsal~~------------ 254 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERL-DEWRKAKRGEAKVVIGARSALFL------------ 254 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHH-HHHHHHHcCCCCEEEeccHHhcc------------
Confidence 4699999985 7799999999987 46888898864321000 00011122457899999865532
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccC--ChhHHHH--HHH----HHhccCeEEEEeccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAAAT--EMA----LRLYAKHRWCITGTPIQ 638 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK--N~~Sk~~--kal----~~L~a~~RwlLTGTPIq 638 (1207)
++. +..+||+||+|... ......+ +.+ ........+++|+||..
T Consensus 255 ---------------p~~--~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~ 306 (679)
T PRK05580 255 ---------------PFK--NLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSL 306 (679)
T ss_pred ---------------ccc--CCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCH
Confidence 222 45789999999753 2211111 111 12334567889999963
No 63
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.70 E-value=0.00037 Score=82.19 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=69.4
Q ss_pred cEEEEeCC-chHHHHHHHHHhcC----CCCCCeEEEEcCCCccc---cc-------cccc-----hhhhhccCCcEEEEe
Q 000967 500 ATLIVCPA-PILAQWDAEITRHT----RPGSLKTCIYEGARNSS---LS-------DTSI-----MDISELVGADIVLTT 559 (1207)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~----~~g~L~V~vy~G~~~~~---~~-------~~~~-----~~~~~l~~~DVVITT 559 (1207)
++++|+|. +|+.+|.+.+.+++ +.....+..+.|..... .. .... .........+|++|+
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 57999997 57788888888776 22357788888862211 00 0000 000112467899999
Q ss_pred hHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChhH-------HHHHHHHHhc-cCeEEE
Q 000967 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-------AATEMALRLY-AKHRWC 631 (1207)
Q Consensus 560 YetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S-------k~~kal~~L~-a~~Rwl 631 (1207)
++++..-.... .+++........-...+||+||+|.+..... .....+.... ..+.++
T Consensus 121 p~~l~~llr~~--------------~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 186 (357)
T TIGR03158 121 PDIFVYLTRFA--------------YIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVF 186 (357)
T ss_pred HHHHHHHHhhh--------------ccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEE
Confidence 99987532110 0000000001123678999999999875331 1122222222 357899
Q ss_pred EeccCCC
Q 000967 632 ITGTPIQ 638 (1207)
Q Consensus 632 LTGTPIq 638 (1207)
+||||-.
T Consensus 187 lSAT~~~ 193 (357)
T TIGR03158 187 LSATPDP 193 (357)
T ss_pred EecCCCH
Confidence 9999854
No 64
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.69 E-value=0.00035 Score=91.38 Aligned_cols=120 Identities=18% Similarity=0.092 Sum_probs=69.1
Q ss_pred CcEEEEeCC-chHHHHHHH-------HHhcC-----CCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhh
Q 000967 499 GATLIVCPA-PILAQWDAE-------ITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKE 565 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~E-------i~k~~-----~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~ 565 (1207)
..+|+|+|. .|..|+.+. +.+++ ..+.+++.+++|....... ........+|+|||.++|..
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r-----~~~l~~~p~IlVtTPE~L~~ 159 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEK-----QKMLKKPPHILITTPESLAI 159 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHH-----HHHHhCCCCEEEecHHHHHH
Confidence 358999997 466776653 33332 1126788999997543210 01112357999999999875
Q ss_pred hcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHh---c--cCeEEEEeccCCC
Q 000967 566 DLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL---Y--AKHRWCITGTPIQ 638 (1207)
Q Consensus 566 d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L---~--a~~RwlLTGTPIq 638 (1207)
.+... .....|. ...+||+||+|.+-+.. ......+.+| . ...+|++|+|+-
T Consensus 160 ll~~~------------------~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~- 218 (876)
T PRK13767 160 LLNSP------------------KFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE- 218 (876)
T ss_pred HhcCh------------------hHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC-
Confidence 43210 0001122 34679999999987432 3333333333 2 356899999963
Q ss_pred CChhhhH
Q 000967 639 RKLDDLY 645 (1207)
Q Consensus 639 N~l~DL~ 645 (1207)
+++++-
T Consensus 219 -~~~~va 224 (876)
T PRK13767 219 -PLEEVA 224 (876)
T ss_pred -CHHHHH
Confidence 344443
No 65
>COG4889 Predicted helicase [General function prediction only]
Probab=97.64 E-value=6.5e-05 Score=92.48 Aligned_cols=116 Identities=21% Similarity=0.162 Sum_probs=62.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccc--------------------hhhhhccCCcEEE
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSI--------------------MDISELVGADIVL 557 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~--------------------~~~~~l~~~DVVI 557 (1207)
..+|.++|+ +|+.|=.+|...-..- .++........+........ .....-..--||.
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQKEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhccCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 468999997 6888876666544321 33433333333322111000 0011112233888
Q ss_pred EehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChh-----HHHHHH---HHHhccCeE
Q 000967 558 TTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-----AAATEM---ALRLYAKHR 629 (1207)
Q Consensus 558 TTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-----Sk~~ka---l~~L~a~~R 629 (1207)
.||..+-.-... ....--.|++||+||||+--... ...+.- -..+++..|
T Consensus 286 sTYQSl~~i~eA----------------------Qe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kR 343 (1518)
T COG4889 286 STYQSLPRIKEA----------------------QEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKR 343 (1518)
T ss_pred EcccchHHHHHH----------------------HHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHh
Confidence 888877653110 11233469999999999853221 111111 124678889
Q ss_pred EEEeccCC
Q 000967 630 WCITGTPI 637 (1207)
Q Consensus 630 wlLTGTPI 637 (1207)
+-+|+||=
T Consensus 344 lYmTATPk 351 (1518)
T COG4889 344 LYMTATPK 351 (1518)
T ss_pred hhcccCch
Confidence 99999993
No 66
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.60 E-value=0.00054 Score=88.02 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=69.3
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
..|||+|.- |..|=..++.++.. ..+++.+|+|...... ........+|||||.+++...+-..
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~~-~~i~v~~~~Gdt~~~~------r~~i~~~~~IivtTPd~L~~~~L~~-------- 147 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELTL-RGVRPATYDGDTPTEE------RRWAREHARYVLTNPDMLHRGILPS-------- 147 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhcc-CCeEEEEEeCCCCHHH------HHHHhcCCCEEEEChHHHHHhhccc--------
Confidence 689999985 66777778888763 3689999999754310 1111234789999999987532100
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCCh-hHHHHHHHHHhc--------cCeEEEEeccC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AAAATEMALRLY--------AKHRWCITGTP 636 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~Sk~~kal~~L~--------a~~RwlLTGTP 636 (1207)
..++ ...|. +-.+||+||||.+... .+.....+.+|. ....+++|+|-
T Consensus 148 -----~~~~---~~~l~--~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi 204 (742)
T TIGR03817 148 -----HARW---ARFLR--RLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT 204 (742)
T ss_pred -----hhHH---HHHHh--cCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 0000 01122 3478999999998652 344444454442 23578999994
No 67
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.53 E-value=0.0016 Score=78.86 Aligned_cols=107 Identities=22% Similarity=0.312 Sum_probs=72.6
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCC-eEEEEcCCCccccccccchhhhhcc-CCcEEEEehHHHhhhcccCCCCccc
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSL-KTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L-~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
.+||++|+- |..|=..++.++.....+ .+++|-|..... +...+. ..||+|.|-+.|...+...
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~-------Q~~~l~~gvdiviaTPGRl~d~le~g------ 233 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGP-------QLRDLERGVDVVIATPGRLIDLLEEG------ 233 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccH-------HHHHHhcCCcEEEeCChHHHHHHHcC------
Confidence 599999997 778999999999986555 456666665432 444444 4899999999998776421
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHh-ccCe-EEEEecc
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRL-YAKH-RWCITGT 635 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L-~a~~-RwlLTGT 635 (1207)
.+.--...++|||||.++-.. ..+.-+.+..+ +... .++-|+|
T Consensus 234 ----------------~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saT 280 (519)
T KOG0331|consen 234 ----------------SLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSAT 280 (519)
T ss_pred ----------------CccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeee
Confidence 123334568999999987433 36666666666 3332 4555555
No 68
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.45 E-value=5e-05 Score=97.22 Aligned_cols=107 Identities=12% Similarity=-0.040 Sum_probs=75.1
Q ss_pred HHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHhhccC-CCC----cceeEEecCC---------
Q 000967 815 KIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAM--AVVEEHSEDFRL-DPL----LNIHLHHNLT--------- 878 (1207)
Q Consensus 815 ~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~l--~~~~e~~~~fr~-D~~----~~lh~~~Nl~--------- 878 (1207)
....++.+.++++|+|....++.++..+..-........ ....+-...|.- |=+ +....+.||.
T Consensus 1214 ~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d~~dc~~~fk~I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1214 YIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKSIDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred HHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcchhhhhhhcccceEEEEEeccCcccccHHhhhhhheec
Confidence 345667779999999999999999987765444333222 223333333322 111 1112233333
Q ss_pred -CCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhh
Q 000967 879 -EILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKC 921 (1207)
Q Consensus 879 -dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~ 921 (1207)
=.||..+.||+ |+|||||++++.|+|++-.+|+||.|+...+-
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~ 1338 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITS 1338 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhh
Confidence 58999999999 99999999999999999999999999976654
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.40 E-value=0.002 Score=75.68 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=67.9
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCcccc----cccc-c--------hhhhhccCCcEEEEehHHHh
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSL----SDTS-I--------MDISELVGADIVLTTYDVLK 564 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~----~~~~-~--------~~~~~l~~~DVVITTYetL~ 564 (1207)
+..++|+|. +++.|+.+.+..++. . ++..++|...... .... . .........+|+++|.+.+.
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~ 106 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELFG--S-NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVL 106 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHhC--c-ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHH
Confidence 468999996 688999999999874 2 4555555322100 0000 0 00111235679999999887
Q ss_pred hhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHHHHHhc--cCeEEEEeccCC
Q 000967 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLY--AKHRWCITGTPI 637 (1207)
Q Consensus 565 ~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~--a~~RwlLTGTPI 637 (1207)
..+..... ...-.+..+.-.+||+||+|.+.... ......+..+. ....+++|+|+-
T Consensus 107 ~~~~~~~~----------------~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SATlp 166 (358)
T TIGR01587 107 KSVFGEFG----------------HYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSATLP 166 (358)
T ss_pred HHHhcccc----------------hHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCch
Confidence 65431000 00011333444789999999987532 22333333343 345788999964
No 70
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.37 E-value=0.00067 Score=83.53 Aligned_cols=107 Identities=11% Similarity=0.015 Sum_probs=68.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+||++|. +|..|+.+.|++.+ ..++.++||.-...... ...........+|||+|...+-.
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~-~~~~~~~~g~~~IVVGTrsalf~------------ 89 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL-QAWRKVKNGEILVVIGTRSALFL------------ 89 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH-HHHHHHHcCCCCEEECChHHHcC------------
Confidence 469999998 58899999999987 36788888754321100 00011123467899999886632
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccC--ChhHH------HHHHHHHhccCeEEEEeccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAA------ATEMALRLYAKHRWCITGTPIQ 638 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK--N~~Sk------~~kal~~L~a~~RwlLTGTPIq 638 (1207)
++. +.++||+||.|... ..... .+.....+.....+++|+||..
T Consensus 90 ---------------p~~--~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 90 ---------------PFK--NLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred ---------------ccc--CCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 222 45899999999753 22221 1222233456678999999973
No 71
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.20 E-value=0.0019 Score=84.24 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=73.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchh--hhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~--~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
+.+|||+|. +|+.+....+... .+++..+.|....... ..... ......++|+++|-+.+...-.
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~------- 568 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDS------- 568 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchH-------
Confidence 468999997 5666455555442 4666655554321100 00000 1122568999999998864200
Q ss_pred cchhhhhhcccCCCcccccc-ccccceeeccCccccCChhH---HHHHHH----HHhccCeEEEEeccCCCCChhhhHhh
Q 000967 576 GDRRFMRFQKRYPVIPTLLT-RIFWWRICLDEAQMVESNAA---AATEMA----LRLYAKHRWCITGTPIQRKLDDLYGL 647 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~-~i~w~rVILDEAH~IKN~~S---k~~kal----~~L~a~~RwlLTGTPIqN~l~DL~sL 647 (1207)
..+.. ..+. .....+||+||||.+-.... ..++.+ ..+.....++||+|...+...|+...
T Consensus 569 ----ll~~L-------~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~ 637 (1195)
T PLN03137 569 ----LLRHL-------ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQA 637 (1195)
T ss_pred ----HHHHH-------HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHH
Confidence 00000 0011 12357899999999854321 122222 23456678999999988888888776
Q ss_pred hhccC
Q 000967 648 LRFLK 652 (1207)
Q Consensus 648 L~FL~ 652 (1207)
|.+..
T Consensus 638 L~l~~ 642 (1195)
T PLN03137 638 LGLVN 642 (1195)
T ss_pred cCCCC
Confidence 65443
No 72
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.16 E-value=0.012 Score=74.62 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=58.7
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCC---CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRP---GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~---g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
++++|++|.- ++.|...++.+...- ...++.+..|...... ........+++|.|.......
T Consensus 223 ~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~------~~t~~k~~~Ilv~T~~L~l~~-------- 288 (675)
T PHA02653 223 RPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDEL------INTNPKPYGLVFSTHKLTLNK-------- 288 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHH------hhcccCCCCEEEEeCcccccc--------
Confidence 5799999985 567888888764421 1345555555432110 011223568888873321111
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhc-c-CeEEEEeccCC
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY-A-KHRWCITGTPI 637 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~-a-~~RwlLTGTPI 637 (1207)
| -....||+||||..-...-.....++.+. . +..+++|+|+-
T Consensus 289 -------------------L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 289 -------------------L--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred -------------------c--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 1 24678999999997544333333333332 2 35799999973
No 73
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.16 E-value=0.0021 Score=65.83 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=55.9
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
+.+||+.|.-++. +|+.+... .+.+.+-.... ........-|-+++|.++...+..
T Consensus 34 ~rvLvL~PTRvva---~em~~aL~--~~~~~~~t~~~----------~~~~~g~~~i~vMc~at~~~~~~~--------- 89 (148)
T PF07652_consen 34 LRVLVLAPTRVVA---EEMYEALK--GLPVRFHTNAR----------MRTHFGSSIIDVMCHATYGHFLLN--------- 89 (148)
T ss_dssp --EEEEESSHHHH---HHHHHHTT--TSSEEEESTTS----------S----SSSSEEEEEHHHHHHHHHT---------
T ss_pred CeEEEecccHHHH---HHHHHHHh--cCCcccCceee----------eccccCCCcccccccHHHHHHhcC---------
Confidence 5899999998774 34555443 34432222111 112235566888999998775421
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHH-HHhc---cCeEEEEeccCCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLY---AKHRWCITGTPIQ 638 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal-~~L~---a~~RwlLTGTPIq 638 (1207)
+.....|+.||+||+|.. .+.|-++.-. ..+. ....+.+|+||--
T Consensus 90 --------------p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 90 --------------PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp --------------SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred --------------cccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 234568999999999985 3445444432 2232 2367899999964
No 74
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.97 E-value=0.0033 Score=81.67 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=73.8
Q ss_pred CcEEEEeCCchHH-HHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~SLl~-QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+-+-|+||++|+. |=.+-|..-+.+-.++|-+..--..... .......-.-++.||||=|+..|.+++..
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE-~~~il~~la~G~vDIvIGTHrLL~kdv~F-------- 714 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKE-QKEILKGLAEGKVDIVIGTHRLLSKDVKF-------- 714 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHH-HHHHHHHHhcCCccEEEechHhhCCCcEE--------
Confidence 4588999999874 5555565544422355554443322110 11111223346789999999999987632
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhcc-CeEEEEeccCCCCChh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLD 642 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a-~~RwlLTGTPIqN~l~ 642 (1207)
-+-.+||+||=|+..= +.-..++.|++ .+.+-||+|||+..|.
T Consensus 715 -------------------kdLGLlIIDEEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 715 -------------------KDLGLLIIDEEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred -------------------ecCCeEEEechhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHH
Confidence 1345899999999853 44567777864 6899999999999874
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.96 E-value=0.0034 Score=79.75 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=65.5
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCC-CccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGA-RNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~-~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.++||+|.. |..||.+++..+..--++++.+..+. ...... .........+||+++|.+.|..++-.+.
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~---~~~rr~~y~~dIvygTp~~LgfDyLrD~------ 183 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYD---ANEKRKIYNSDIVYTTNSALGFDYLIDN------ 183 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccC---HHHHHHhCCCCEEEECchhhhhhHHHHH------
Confidence 589999987 66787777755443225666554332 111110 0011222468999999999965432100
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL 648 (1207)
+...+ ..+......++|+||||.+--.. ++.-+++||.|-.. .++|...
T Consensus 184 ---l~~~~------~~~~~r~l~~~IVDEaDsILiDe-----------artpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 184 ---LASNK------EGKFLRPFNYVIVDEVDSVLLDS-----------AQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred ---hhcch------hhcccccCcEEEEecHhhHhhcc-----------CcCCeeeeCCCccc--hHHHHHH
Confidence 00000 01122356789999999873222 44568899977533 3466654
No 76
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.92 E-value=0.012 Score=76.42 Aligned_cols=130 Identities=12% Similarity=0.079 Sum_probs=69.1
Q ss_pred CcEEEEeCCc-hHHHHHHHHH-----hcCC----CCCCeEEEEcCCCcccccccc-chh---hhhcc-----CCcEEEEe
Q 000967 499 GATLIVCPAP-ILAQWDAEIT-----RHTR----PGSLKTCIYEGARNSSLSDTS-IMD---ISELV-----GADIVLTT 559 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~-----k~~~----~g~L~V~vy~G~~~~~~~~~~-~~~---~~~l~-----~~DVVITT 559 (1207)
..+|||||.. +.....+=+. .|+. ...++..+|...++.+..... ... ..... .-.|+|+|
T Consensus 90 ~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~n 169 (986)
T PRK15483 90 FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLIN 169 (986)
T ss_pred cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEe
Confidence 5799999985 4444433322 3332 224778888865421110000 001 11111 35699999
Q ss_pred hHHHhhhcccCCCCcccchhhhhhcccCCCcccccccc--ccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCC
Q 000967 560 YDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRI--FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1207)
Q Consensus 560 YetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i--~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPI 637 (1207)
-+.|.++... ....+.... ... ..|+..+ .=-.||+||+|++... .+..+++..|+..+.+--|+|--
T Consensus 170 iqa~n~~~~~---~~~~D~~l~--~g~----~~p~~~i~~~~PivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 170 AGMLNSASMT---RDDYDQTLL--GGF----TSPVDALAATRPVVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred hHHhcccccc---cchhhhhhc--cCC----CChHHHHHhCCCEEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecC
Confidence 9999765210 000000000 000 0111111 1226899999999652 45678889999999888999965
Q ss_pred C
Q 000967 638 Q 638 (1207)
Q Consensus 638 q 638 (1207)
.
T Consensus 240 ~ 240 (986)
T PRK15483 240 D 240 (986)
T ss_pred C
Confidence 4
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.89 E-value=0.0039 Score=79.33 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=84.4
Q ss_pred cEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.++-|+|. +|..--.+-+.+.+.+-+++|.-+.|.... ...+..+.+|+|||-|..----.+ ..++
T Consensus 166 KiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql--------~~tei~~tqiiVTTPEKwDvvTRk----~~~d- 232 (1230)
T KOG0952|consen 166 KIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQL--------TKTEIADTQIIVTTPEKWDVVTRK----SVGD- 232 (1230)
T ss_pred eEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchh--------hHHHHHhcCEEEecccceeeeeee----eccc-
Confidence 67888995 565555555555444447999999997653 345588899999998753110000 0000
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHH-----HHHHHHH----hccCeEEEEeccCCCCChhhhHhhhh
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA-----ATEMALR----LYAKHRWCITGTPIQRKLDDLYGLLR 649 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk-----~~kal~~----L~a~~RwlLTGTPIqN~l~DL~sLL~ 649 (1207)
+.|. -.-.+||+||.|.+...... .++.++. ...-+-++||+| +-.+-.+-+
T Consensus 233 -------------~~l~-~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSAT-----lPN~eDvA~ 293 (1230)
T KOG0952|consen 233 -------------SALF-SLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSAT-----LPNYEDVAR 293 (1230)
T ss_pred -------------hhhh-hheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeecc-----CCCHHHHHH
Confidence 0111 12357999999999887643 3444432 234567899999 333445678
Q ss_pred ccCCCCCCChhhhhhhhc
Q 000967 650 FLKSSPFSISRWWIEVIR 667 (1207)
Q Consensus 650 FL~p~~f~~~~~F~~~~~ 667 (1207)
||+..+......|...|.
T Consensus 294 fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 294 FLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred HhcCCCccceeeeccccc
Confidence 888877666666665554
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=96.80 E-value=0.0032 Score=84.40 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=56.0
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCe---EEEEcCCCccccccccchhhhhc--cCCcEEEEehHHHhhhcccCCC
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLK---TCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSD 572 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~---V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~ 572 (1207)
..+|||+|+. |+.|+.+++.+++..-+++ +..|+|...... .......+ ..+||||+|.+.|...+.
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e---~~~~~~~l~~~~~dIlV~Tp~rL~~~~~---- 194 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKE---KKEFMERIENGDFDILITTTMFLSKNYD---- 194 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHH---HHHHHHHHhcCCCCEEEECHHHHHHHHH----
Confidence 4689999986 7789999999987532333 335777532210 00011112 358999999999876532
Q ss_pred CcccchhhhhhcccCCCccccccccccceeeccCccccCC
Q 000967 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1207)
Q Consensus 573 ~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1207)
.+.. .++++|+||||++-.
T Consensus 195 --------------------~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 195 --------------------ELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred --------------------HhcC-CCCEEEEeChHhhhh
Confidence 1222 789999999998744
No 79
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.74 E-value=0.0038 Score=73.96 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=69.3
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+-+.+||+|.- |..|=.++|.+|++..++.|....|.+.-.-..............||+|+|-+.|..++....
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k----- 289 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK----- 289 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC-----
Confidence 34689999986 567999999999998889999999986543222222223333467999999999998775311
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1207)
.+.--+-.++|+|||.++-+..
T Consensus 290 ----------------~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 290 ----------------SFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred ----------------CcchhhceEEEechHHHHHHHH
Confidence 2333455679999999987644
No 80
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.48 E-value=0.011 Score=75.64 Aligned_cols=125 Identities=17% Similarity=0.159 Sum_probs=78.6
Q ss_pred cEEEEeCCchHH-HHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAPILA-QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~SLl~-QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.+|-|.|.--+. -=..-++.|...-++.|.+-||....... ....-.-.||+|||-++|.--+...
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er-----~r~~~~PPdILiTTPEsL~lll~~~-------- 141 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEK-----QKMLKNPPHILITTPESLAILLNSP-------- 141 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHh-----hhccCCCCcEEEeChhHHHHHhcCH--------
Confidence 478888864332 22222333322227888899997654322 1222345899999999998866420
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc----cCeEEEEeccCCCCChhhhHhhhhccC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLK 652 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~----a~~RwlLTGTPIqN~l~DL~sLL~FL~ 652 (1207)
+ ....|..+. .||+||.|.+.+.+ ++.+-.+.+|. --.|++||+| +.+..-+.+||.
T Consensus 142 ~----------~r~~l~~vr--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSAT-----V~~~~~varfL~ 204 (814)
T COG1201 142 K----------FRELLRDVR--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSAT-----VGPPEEVAKFLV 204 (814)
T ss_pred H----------HHHHhcCCc--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhc-----cCCHHHHHHHhc
Confidence 0 012244443 59999999988655 67777777663 2569999999 445666677777
Q ss_pred CC
Q 000967 653 SS 654 (1207)
Q Consensus 653 p~ 654 (1207)
..
T Consensus 205 g~ 206 (814)
T COG1201 205 GF 206 (814)
T ss_pred CC
Confidence 64
No 81
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.10 E-value=0.054 Score=69.84 Aligned_cols=38 Identities=18% Similarity=-0.008 Sum_probs=23.6
Q ss_pred cceeeccCccccCChhHHHHHHHHH-h--cc----CeEEEEeccCC
Q 000967 599 WWRICLDEAQMVESNAAAATEMALR-L--YA----KHRWCITGTPI 637 (1207)
Q Consensus 599 w~rVILDEAH~IKN~~Sk~~kal~~-L--~a----~~RwlLTGTPI 637 (1207)
-.++|||||| +...-......+.. + .. ...+++|+|+-
T Consensus 172 v~~LVLDEAD-Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 172 DALIVHDEAH-LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred ceEEEEehhh-hccccHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 4589999999 44433333333333 2 22 36789999984
No 82
>PRK14701 reverse gyrase; Provisional
Probab=95.74 E-value=0.024 Score=78.08 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=55.9
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCC--CCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPG--SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g--~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
.+|||+|+. |+.|..+.+..++..- .+++..++|....... ........-..+||+|+|-+.+...+..
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~-~~~~~~l~~g~~dILV~TPgrL~~~~~~------- 195 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEK-EEFLERIENGDFDILVTTAQFLARNFPE------- 195 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECCchhHHhHHH-------
Confidence 689999985 7789999999876421 3566778776432100 0000011123589999999877654320
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1207)
+....++++|+||||.+-
T Consensus 196 -----------------l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 196 -----------------MKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred -----------------HhhCCCCEEEEECceecc
Confidence 222568899999999873
No 83
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.64 E-value=0.039 Score=70.94 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=62.3
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCc-cccccccchhhhhccCCcEEEEehHHHhhhcccCCCC
Q 000967 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1207)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~-~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1207)
+.++||+|+..+. .|...+-++. ++++.++.|... .. ........||++.|...+.-|+-.+.-.
T Consensus 120 ~~v~VvTpt~~LA~qd~e~~~~l~~~l---Gl~v~~i~g~~~~~~-------~r~~~y~~dIvygT~~~l~fDyLrd~~~ 189 (790)
T PRK09200 120 KGVHLITVNDYLAKRDAEEMGQVYEFL---GLTVGLNFSDIDDAS-------EKKAIYEADIIYTTNSELGFDYLRDNLA 189 (790)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCcHH-------HHHHhcCCCEEEECCccccchhHHhccc
Confidence 4689999998663 6888888887 699988887543 11 2223455899999976664332110000
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccC
Q 000967 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1207)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1207)
.. +..+..-...++|+|||+.+-=.. ++.-+++||.|
T Consensus 190 ~~---------------~~~~~~r~~~~~IvDEaDsiLiDe-----------a~tpliisg~~ 226 (790)
T PRK09200 190 DS---------------KEDKVQRPLNYAIIDEIDSILLDE-----------AQTPLIISGKP 226 (790)
T ss_pred cc---------------hhhhcccccceEEEeccccceecc-----------CCCceeeeCCC
Confidence 00 011233467889999999874222 33346787754
No 84
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.47 E-value=0.06 Score=73.35 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=69.6
Q ss_pred CcEEEEeCCc-hHHHHHHHHHh-----------cC-CCCCCeEEEEcCCCccccccccchhhhhc-cCCcEEEEehHHHh
Q 000967 499 GATLIVCPAP-ILAQWDAEITR-----------HT-RPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLK 564 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k-----------~~-~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~ 564 (1207)
..+|+|+|.- |..|=.++++. +. ....++|.+++|...... ....+ ...||+|||.+.|.
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~e------R~rll~~ppdILVTTPEsL~ 111 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQE------RSKLTRNPPDILITTPESLY 111 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHH------HHHHhcCCCCEEEecHHHHH
Confidence 3689999985 44333333322 11 112588999999754321 11111 35799999999987
Q ss_pred hhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHhc-----cCeEEEEeccCC
Q 000967 565 EDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-----AKHRWCITGTPI 637 (1207)
Q Consensus 565 ~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-----a~~RwlLTGTPI 637 (1207)
.-+... . ...|.. -.+||+||+|.+.+. .+.....+.+|. ...+|+||+|=
T Consensus 112 ~LLtsk------~-------------r~~L~~--Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI- 169 (1490)
T PRK09751 112 LMLTSR------A-------------RETLRG--VETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATV- 169 (1490)
T ss_pred HHHhhh------h-------------hhhhcc--CCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeC-
Confidence 643210 0 011332 457999999999754 244444454442 24689999995
Q ss_pred CCChhhhHh
Q 000967 638 QRKLDDLYG 646 (1207)
Q Consensus 638 qN~l~DL~s 646 (1207)
++++++-.
T Consensus 170 -~n~eevA~ 177 (1490)
T PRK09751 170 -RSASDVAA 177 (1490)
T ss_pred -CCHHHHHH
Confidence 33666543
No 85
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.03 E-value=0.4 Score=51.84 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=22.3
Q ss_pred ccceeeccCccccCChhHHHHHHHHH-hccCeEEEEeccCCC
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALR-LYAKHRWCITGTPIQ 638 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~-L~a~~RwlLTGTPIq 638 (1207)
.|+.||+|||-.+.-. .++.. ..+..+++|-|=|-|
T Consensus 192 ~~d~vIvDEAsq~~e~-----~~l~~l~~~~~~~vlvGD~~Q 228 (236)
T PF13086_consen 192 KFDVVIVDEASQITEP-----EALIPLSRAPKRIVLVGDPKQ 228 (236)
T ss_dssp --SEEEETTGGGS-HH-----HHHHHHTTTBSEEEEEE-TTS
T ss_pred cCCEEEEeCCCCcchH-----HHHHHHHHhCCEEEEECChhh
Confidence 7999999999877422 22223 334489999998776
No 86
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=94.96 E-value=0.07 Score=67.86 Aligned_cols=97 Identities=8% Similarity=-0.031 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHhhccCCC-----------
Q 000967 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEAMAVVEEHSEDFRLDP----------- 867 (1207)
Q Consensus 802 t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~---y~~~l~~~~e~~~~fr~D~----------- 867 (1207)
+..+-...+++.+. +..+.++.+|||++.....+.+.+.|.+.... +...-..++..+..|...+
T Consensus 386 t~~~k~~ai~~~i~-~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATnmAg 464 (745)
T TIGR00963 386 TEEEKWKAVVDEIK-ERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAG 464 (745)
T ss_pred CHHHHHHHHHHHHH-HHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEEEecccc
Confidence 44555555555543 33456799999999999999999888765321 1111223333333332222
Q ss_pred -----Cc-------ceeEEecCCCCCccchhhhh-hhhccCCCCc
Q 000967 868 -----LL-------NIHLHHNLTEILPMVANCAT-ELSQNEQHFP 899 (1207)
Q Consensus 868 -----~~-------~lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~~ 899 (1207)
-. -+|++..-..=++..++|.. |+-|-|++=.
T Consensus 465 RGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 465 RGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred CCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 11 23665555557788999999 9999998633
No 87
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.85 E-value=0.098 Score=69.33 Aligned_cols=115 Identities=19% Similarity=0.138 Sum_probs=66.9
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.+++|+=-. |-.|=.++|..+.. ...... ..... ......-.-..-.|||||-..|.......
T Consensus 305 ~v~fvvDR~dLd~Q~~~~f~~~~~--~~~~~~--~~~s~----~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~-------- 368 (962)
T COG0610 305 KVLFVVDRKDLDDQTSDEFQSFGK--VAFNDP--KAEST----SELKELLEDGKGKIIVTTIQKFNKAVKED-------- 368 (962)
T ss_pred eEEEEechHHHHHHHHHHHHHHHH--hhhhcc--cccCH----HHHHHHHhcCCCcEEEEEecccchhhhcc--------
Confidence 456666554 66799999999864 121111 11110 00111111124579999999988765321
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhh
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDD 643 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~D 643 (1207)
......-....||+||||+--.+... ..+-..++.-.-++.|||||...-.+
T Consensus 369 ------------~~~~~~~~~ivvI~DEaHRSQ~G~~~-~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 369 ------------ELELLKRKNVVVIIDEAHRSQYGELA-KLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred ------------cccccCCCcEEEEEechhhccccHHH-HHHHHHhccceEEEeeCCcccccccc
Confidence 01234556788999999987544321 22223356677899999999865544
No 88
>PRK09694 helicase Cas3; Provisional
Probab=94.20 E-value=0.25 Score=64.74 Aligned_cols=76 Identities=13% Similarity=0.020 Sum_probs=43.3
Q ss_pred CcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHH-HHHHHhc--cCeE
Q 000967 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT-EMALRLY--AKHR 629 (1207)
Q Consensus 553 ~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~-kal~~L~--a~~R 629 (1207)
.+|+|+|.+.+-.-+-... -..+| +..+.-..||+||+|.+-....... ..+..+. ....
T Consensus 411 api~V~TiDQlL~a~l~~k------h~~lR-----------~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~v 473 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVK------HRFIR-----------GFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSV 473 (878)
T ss_pred CCEEEcCHHHHHHHHHccc------hHHHH-----------HHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcE
Confidence 6899999988765432100 00000 1123345899999999854433332 3333332 3568
Q ss_pred EEEeccCCCCChhhhH
Q 000967 630 WCITGTPIQRKLDDLY 645 (1207)
Q Consensus 630 wlLTGTPIqN~l~DL~ 645 (1207)
++||+|+-..-..+|.
T Consensus 474 IllSATLP~~~r~~L~ 489 (878)
T PRK09694 474 ILLSATLPATLKQKLL 489 (878)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 9999998654444443
No 89
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.10 E-value=0.21 Score=58.25 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=80.0
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
..||++|.- |-.|-...|+.....-++++.+..|..... .....-..+.+|+|.|-+.|...+....
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~-----~q~~~L~kkPhilVaTPGrL~dhl~~Tk------- 198 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM-----LQANQLSKKPHILVATPGRLWDHLENTK------- 198 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH-----HHHHHhhcCCCEEEeCcHHHHHHHHhcc-------
Confidence 479999997 567877778887665578998888865432 1123344668899999999998764211
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhccCeE-EEEeccCCCCChhhh
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHR-WCITGTPIQRKLDDL 644 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~~R-wlLTGTPIqN~l~DL 644 (1207)
.+..-.-..+|+|||.++-|.+ -..-+.++.++..++ ++.|+|- ..++..|
T Consensus 199 --------------gf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM-t~kv~kL 252 (476)
T KOG0330|consen 199 --------------GFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATM-TKKVRKL 252 (476)
T ss_pred --------------CccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeec-chhhHHH
Confidence 1222234568999999998876 566677778876654 5667773 3444443
No 90
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.88 E-value=0.36 Score=63.70 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=28.7
Q ss_pred ccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCCh
Q 000967 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1207)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1207)
...+|||||+|..|-.++.... ..| .....+|+||||++...
T Consensus 414 a~~AdivItNHa~L~~~~~~~~--------------------~il--p~~~~lIiDEAH~L~d~ 455 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNP--------------------ELF--PSFRDLIIDEAHHLPDI 455 (850)
T ss_pred HhcCCEEEecHHHHHHHhhccc--------------------ccC--CCCCEEEEECcchHHHH
Confidence 4568899999999988752100 112 22368999999999643
No 91
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=93.78 E-value=0.11 Score=59.91 Aligned_cols=200 Identities=12% Similarity=0.046 Sum_probs=91.2
Q ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCC
Q 000967 707 EECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHP 786 (1207)
Q Consensus 707 ~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP 786 (1207)
.++.+.++|+..|+++|+.+.......+.+.+.... .....++.........+-..+.+|+.+|+||
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP 70 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETND-------------SSESIDSLLDESLVQSMELLIENLRLVANHP 70 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTT-------------T--HHHH-------HHHHHHHHHHHHHHH-G
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccC-------------ccccccchhhhhhHHHHHHHHHHHHHhccCc
Confidence 367789999999999999988765544443332100 0000000001122355667788999999999
Q ss_pred CCCCcccccccCCCCCHH----------HHHHHHHHHHHH-hhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHH------
Q 000967 787 QVGSSGLRSLQQSPLSMD----------EILMVLIGKTKI-EGEEALRKLVMALNGLAGIALIEKNLSQAVSLY------ 849 (1207)
Q Consensus 787 ~L~~~~~~~l~~~~~t~e----------elL~~Ll~k~~~-e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y------ 849 (1207)
+|.-.-.....-..+.+- .+|..|++.+.. .-.+..-+++|.++....+++||..+-.....|
T Consensus 71 ~LlvdH~mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~ 150 (297)
T PF11496_consen 71 SLLVDHYMPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGE 150 (297)
T ss_dssp GGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS-
T ss_pred cccccccCccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCC
Confidence 985433321111112221 255566655422 112334688899999999999998654432222
Q ss_pred ---HHHHHHH-------------HHHH---hh-----ccCCCCc------------ceeEEecCCCCCccchhhhh-hhh
Q 000967 850 ---KEAMAVV-------------EEHS---ED-----FRLDPLL------------NIHLHHNLTEILPMVANCAT-ELS 892 (1207)
Q Consensus 850 ---~~~l~~~-------------~e~~---~~-----fr~D~~~------------~lh~~~Nl~dwnpa~d~QA~-R~~ 892 (1207)
.+..... .... .. +..+.+. .+.+-++. .+++..+.... |.+
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~-~~d~~~p~i~~lR~~ 229 (297)
T PF11496_consen 151 SLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDP-SFDTSLPSIEQLRTQ 229 (297)
T ss_dssp -S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SS-T--TTSHHHHHHH--
T ss_pred CCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecC-CCCCCChHHHHHHhh
Confidence 1111100 0000 00 1111111 12333333 36666555444 544
Q ss_pred ccCCCCceEEEEcccCCcccccchhHhhh
Q 000967 893 QNEQHFPGCSEKAFKIHSIETCDENARKC 921 (1207)
Q Consensus 893 riGQ~~~v~vyRl~t~~tiee~~~~~~k~ 921 (1207)
--.+ +.+-|+||+..+|+|-.+.+..+.
T Consensus 230 ~~~~-~~~PiirLv~~nSiEHi~L~~~~~ 257 (297)
T PF11496_consen 230 NRRN-RLCPIIRLVPSNSIEHIELCFPKS 257 (297)
T ss_dssp ------S--EEEEEETTSHHHHHHHHTTT
T ss_pred cCCC-CCCcEEEEeeCCCHHHHHHHccCc
Confidence 3333 788899999999999887755553
No 92
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.54 E-value=0.37 Score=59.92 Aligned_cols=110 Identities=20% Similarity=0.196 Sum_probs=74.0
Q ss_pred EEEEeCCc-hHHHHHHHHHhcCCCC-CCeEEEEcCCCccccccccchhhhhcc-CCcEEEEehHHHhhhcccCCCCcccc
Q 000967 501 TLIVCPAP-ILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELV-GADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 501 tLIV~P~S-Ll~QW~~Ei~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~-~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.||++|+- |..|=.+++.++.... .+++..+.|...... +...+. ..||||.|-..+...+..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~------q~~~l~~~~~ivVaTPGRllD~i~~-------- 167 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK------QIEALKRGVDIVVATPGRLLDLIKR-------- 167 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH------HHHHHhcCCCEEEECccHHHHHHHc--------
Confidence 89999997 6689999998887643 577766666533211 223333 389999999998865532
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhcc-CeEEEEeccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA-KHRWCITGTPIQ 638 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a-~~RwlLTGTPIq 638 (1207)
..|..-.-..+|+|||-++-+.. ......+..++. ...++.|+|--.
T Consensus 168 --------------~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~ 217 (513)
T COG0513 168 --------------GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD 217 (513)
T ss_pred --------------CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 12444456689999999987664 444555555654 567788888543
No 93
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.52 E-value=0.27 Score=61.50 Aligned_cols=149 Identities=16% Similarity=0.233 Sum_probs=85.2
Q ss_pred CCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCcccccccccc------ceeeccCccccCC-------hhHHHH
Q 000967 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFW------WRICLDEAQMVES-------NAAAAT 618 (1207)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w------~rVILDEAH~IKN-------~~Sk~~ 618 (1207)
+-.|++.||..|-.+... .+.+...|+. +-+.| .+||+||.|+.|| ..|++.
T Consensus 368 krGViFaTYtaLIGEs~~-----~~~kyrtR~r----------QllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG 432 (1300)
T KOG1513|consen 368 KRGVIFATYTALIGESQG-----KGGKYRTRFR----------QLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTG 432 (1300)
T ss_pred cceeEEEeeHhhhhhccc-----cCchHHHHHH----------HHHHHhhhccceeEEehhhhhhcccccccCCCcCccc
Confidence 456999999999887532 1111111111 11234 3799999999999 346777
Q ss_pred HHHHHhc----cCeEEEEeccCCCCChhhhHhhhhccCCCCCCC------hhhhhhhhcCCCCCCCcchHHHH--HHHHH
Q 000967 619 EMALRLY----AKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI------SRWWIEVIRDPYENGDVGAMEFT--HKFFK 686 (1207)
Q Consensus 619 kal~~L~----a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~~------~~~F~~~~~~pi~~~~~~~~~~L--~~lL~ 686 (1207)
+++..|+ --+.+--|+|-- .|=-++....+.+.||. +..|...+ ++....+++-. --.++
T Consensus 433 ~tVLdLQk~LP~ARVVYASATGA----sEPrNMaYM~RLGlWGegtaf~eF~eFi~Av----EkRGvGAMEIVAMDMK~r 504 (1300)
T KOG1513|consen 433 KTVLDLQKKLPNARVVYASATGA----SEPRNMAYMVRLGLWGEGTAFPEFEEFIHAV----EKRGVGAMEIVAMDMKLR 504 (1300)
T ss_pred HhHHHHHHhCCCceEEEeeccCC----CCcchhhhhhhhccccCCCcCccHHHHHHHH----HhcCCceeeeeehhhhhh
Confidence 7777653 344555666633 23334444555555554 33343333 33333332211 11122
Q ss_pred hHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 000967 687 EIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC 730 (1207)
Q Consensus 687 ~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~ 730 (1207)
...+ +.+|..-.-...+-.|+||++=++.|+...+-.
T Consensus 505 GmYi-------ARQLSFkgVsFrieEv~ls~eF~k~Yn~a~~LW 541 (1300)
T KOG1513|consen 505 GMYI-------ARQLSFKGVSFRIEEVPLSKEFRKVYNRAAELW 541 (1300)
T ss_pred hhhh-------hhhccccCceEEEEecccCHHHHHHHHHHHHHH
Confidence 2222 225667777888999999999999999765443
No 94
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=93.31 E-value=0.71 Score=58.52 Aligned_cols=116 Identities=17% Similarity=0.060 Sum_probs=64.6
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
..++||+|+--+. +|...+-++. ++++....|..... ........||++.|-..|.-|+-.+.-..
T Consensus 145 ~~v~VvTptreLA~qdae~~~~l~~~l---Glsv~~i~gg~~~~-------~r~~~y~~dIvygT~~e~~FDyLrd~~~~ 214 (656)
T PRK12898 145 LPVHVITVNDYLAERDAELMRPLYEAL---GLTVGCVVEDQSPD-------ERRAAYGADITYCTNKELVFDYLRDRLAL 214 (656)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHhhc---CCEEEEEeCCCCHH-------HHHHHcCCCEEEECCCchhhhhccccccc
Confidence 4689999998653 6777777776 68887776653211 22233467999999777666543322111
Q ss_pred cc--chhhh---hhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccC
Q 000967 575 EG--DRRFM---RFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1207)
Q Consensus 575 ~~--~~~~~---r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1207)
.+ +.... +....+. ....+....++++|+||+..+-=. .+..-+++||.|
T Consensus 215 ~~~~~~~~~~~~~l~~~~~-~~~~~v~r~~~~aIvDEvDSiLiD-----------eartpliis~~~ 269 (656)
T PRK12898 215 GQRASDARLALESLHGRSS-RSTQLLLRGLHFAIVDEADSVLID-----------EARTPLIISAPA 269 (656)
T ss_pred cccccchhhhhhhhccccC-chhhhcccccceeEeecccceeec-----------cCCCceEEECCC
Confidence 00 00000 0000000 112234457889999999876321 244457888844
No 95
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=93.12 E-value=0.45 Score=61.87 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=64.1
Q ss_pred cEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 500 ~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
+++||+|+.-+ .+|...+.+++ ++++....|...... ..... ..|||+.|-+.|.-++-......
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l---GLsV~~i~GG~~~~e------q~~~y-~~DIVygTPgRLgfDyLrd~~~~- 205 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL---GLTTGVLVSGSPLEK------RKEIY-QCDVVYGTASEFGFDYLRDNSIA- 205 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHHH------HHHHc-CCCEEEECCChhHHHHhhCCCCC-
Confidence 47899998643 46888888887 588876665432210 11122 58999999888844332111000
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhh
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sL 647 (1207)
.....+....+..+|+|||-.+-- -.|+--+++||.+-.. .++|..
T Consensus 206 -------------~~~~~~vqr~~~~~IIDEADsmLi-----------DEArTPLIISg~~~~~--~~~Y~~ 251 (970)
T PRK12899 206 -------------TRKEEQVGRGFYFAIIDEVDSILI-----------DEARTPLIISGPGEKH--NPVYFE 251 (970)
T ss_pred -------------cCHHHhhcccccEEEEechhhhhh-----------hccCCceeeeCCCccc--cHHHHH
Confidence 000112345688999999987632 1345557788776433 344443
No 96
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=93.08 E-value=2.1 Score=55.16 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCC
Q 000967 509 ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYP 588 (1207)
Q Consensus 509 Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~ 588 (1207)
|-.|=-++|+..+. +.. +..|.- .--.++..+|+|-+.||+-+...++
T Consensus 352 LSNQKfRDFk~tF~--Dvg--LlTGDv------------qinPeAsCLIMTTEILRsMLYrgad---------------- 399 (1248)
T KOG0947|consen 352 LSNQKFRDFKETFG--DVG--LLTGDV------------QINPEASCLIMTTEILRSMLYRGAD---------------- 399 (1248)
T ss_pred hccchHHHHHHhcc--ccc--eeecce------------eeCCCcceEeehHHHHHHHHhcccc----------------
Confidence 33466677777664 333 566643 2335678999999999997753221
Q ss_pred CccccccccccceeeccCccccCChh-HHHHHHHH-Hhc-cCeEEEEeccCCCCC
Q 000967 589 VIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLY-AKHRWCITGTPIQRK 640 (1207)
Q Consensus 589 ~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~-~L~-a~~RwlLTGTPIqN~ 640 (1207)
.+..+ ..||+||.|+|-+.. .-.+.-+- .|+ -..-++||+| +.|.
T Consensus 400 ----liRDv--E~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSAT-VPN~ 447 (1248)
T KOG0947|consen 400 ----LIRDV--EFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSAT-VPNT 447 (1248)
T ss_pred ----hhhcc--ceEEEeeeeecccccccccceeeeeeccccceEEEEecc-CCCh
Confidence 23333 459999999996543 23333332 233 3456889999 4443
No 97
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.01 E-value=0.66 Score=55.90 Aligned_cols=121 Identities=18% Similarity=0.212 Sum_probs=76.5
Q ss_pred CCCcEEEEeCCch----HHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCC
Q 000967 497 ATGATLIVCPAPI----LAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSD 572 (1207)
Q Consensus 497 ~~~~tLIV~P~SL----l~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~ 572 (1207)
.+-++||+||+-= +++-...+..|+ ++.|...-|.-..+. ....--...||||.|.+.|-.++.....
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt---~I~~~L~vGGL~lk~-----QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFT---DITVGLAVGGLDLKA-----QEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhc---cceeeeeecCccHHH-----HHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 4568999999863 356667788888 688888777533221 1222235689999999999887654221
Q ss_pred CcccchhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHHHHHhcc--CeEEEEeccCCCCChhhhHhh
Q 000967 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYA--KHRWCITGTPIQRKLDDLYGL 647 (1207)
Q Consensus 573 ~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~a--~~RwlLTGTPIqN~l~DL~sL 647 (1207)
+.--.-..+|+|||.++-... .-...-+.++.+ +..++.|+|- ...+.||-++
T Consensus 323 ---------------------f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~sl 378 (691)
T KOG0338|consen 323 ---------------------FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL 378 (691)
T ss_pred ---------------------ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHHh
Confidence 222234469999999864322 222333334444 4458899994 4557777765
No 98
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=92.35 E-value=0.71 Score=59.91 Aligned_cols=131 Identities=15% Similarity=0.007 Sum_probs=66.0
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
...+.|.|.. ++.+=.+.+.+++.........+||......... ... ..-+.++++++....+-..... ..
T Consensus 247 ~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~----~~~--~~~~~~~~~ds~~~~~~~~~~~--~~ 318 (733)
T COG1203 247 SRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLE----PDQ--DILLTLTTNDSYKKLLLALIVV--TP 318 (733)
T ss_pred ceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhc----ccc--ccceeEEecccccceecccccc--CH
Confidence 4567777764 6677888888777522222221355433221100 000 1125666666655433211100 00
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh-hH-HHHHHHHHhc--cCeEEEEeccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AA-AATEMALRLY--AKHRWCITGTPIQ 638 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~S-k~~kal~~L~--a~~RwlLTGTPIq 638 (1207)
-........+...+. +..+.-..||+||+|.+-.. .. ....++..+. ....+++|||+-+
T Consensus 319 ~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 319 IQILIFSVKGFKFEF-LALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred hHhhhhhccccchHH-HHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 000111111222223 66677889999999998766 33 2333334443 6778999999754
No 99
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=92.33 E-value=0.46 Score=62.08 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.2
Q ss_pred hhhh-hhhccCCCCceEEEEcccCCc
Q 000967 886 NCAT-ELSQNEQHFPGCSEKAFKIHS 910 (1207)
Q Consensus 886 ~QA~-R~~riGQ~~~v~vyRl~t~~t 910 (1207)
.+|. |+-|-|..+++..|||.++..
T Consensus 312 asa~QR~GRAGR~~~G~cyrL~t~~~ 337 (819)
T TIGR01970 312 ASATQRAGRAGRLEPGVCYRLWSEEQ 337 (819)
T ss_pred HHHHhhhhhcCCCCCCEEEEeCCHHH
Confidence 3455 888888889999999998753
No 100
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=91.90 E-value=0.056 Score=45.37 Aligned_cols=30 Identities=40% Similarity=1.035 Sum_probs=24.3
Q ss_pred hcccccccccccccccccccccccccccccCcCC
Q 000967 417 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1207)
Q Consensus 417 ic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~ 450 (1207)
+|+. ....+.+|+|+.|+.|.|..|++...
T Consensus 4 vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 4 VCGQ----SDDDGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp TTTS----SCTTSSEEEBSTTSCEEETTTSTSSH
T ss_pred CCCC----cCCCCCeEEcCCCChhhCcccCCCCh
Confidence 6666 23467899999999999999998654
No 101
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.74 E-value=0.53 Score=57.03 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=60.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
...||++|+. |+.|=.+|.+|+.-...++..+.+|....+.. ...--..+||+++|-+.|..-+..-
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q-----~~~~~~gcdIlvaTpGrL~d~~e~g------- 220 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQ-----LRFIKRGCDILVATPGRLKDLIERG------- 220 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhh-----hhhhccCccEEEecCchhhhhhhcc-------
Confidence 4689999986 88999999999987667777766665443211 2333467999999999988754320
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1207)
+ -.|..+. ++|||||.++-
T Consensus 221 --------~-----i~l~~~k--~~vLDEADrMl 239 (482)
T KOG0335|consen 221 --------K-----ISLDNCK--FLVLDEADRML 239 (482)
T ss_pred --------e-----eehhhCc--EEEecchHHhh
Confidence 0 1244444 89999999764
No 102
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=91.68 E-value=0.67 Score=60.63 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=21.4
Q ss_pred hhhh-hhhccCCCCceEEEEcccCCcc
Q 000967 886 NCAT-ELSQNEQHFPGCSEKAFKIHSI 911 (1207)
Q Consensus 886 ~QA~-R~~riGQ~~~v~vyRl~t~~ti 911 (1207)
.+|. |+-|-|...++..|||.++...
T Consensus 315 asa~QR~GRaGR~~~G~cyrL~t~~~~ 341 (812)
T PRK11664 315 ASMTQRAGRAGRLEPGICLHLYSKEQA 341 (812)
T ss_pred hhhhhhccccCCCCCcEEEEecCHHHH
Confidence 3455 8899999999999999998653
No 103
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.42 E-value=0.4 Score=61.98 Aligned_cols=87 Identities=17% Similarity=0.278 Sum_probs=60.5
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCC-CeEEE-EcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGS-LKTCI-YEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~-L~V~v-y~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
+..+||+|++ |+.|=.+-|.++..... +++.+ ||+.-..+.. ......-.-.+|||+|||-..|.+.++
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ek-ee~le~i~~gdfdIlitTs~FL~k~~e------- 197 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEK-EEALERIESGDFDILITTSQFLSKRFE------- 197 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHH-HHHHHHHhcCCccEEEEeHHHHHhhHH-------
Confidence 5799999986 56899999999885333 55444 8986322110 111223334579999999999998764
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCcccc
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1207)
.|.+++|+.|++|-+..+
T Consensus 198 -----------------~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 198 -----------------ELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred -----------------HhcccCCCEEEEccHHHH
Confidence 367788999999988753
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=90.87 E-value=0.57 Score=60.86 Aligned_cols=101 Identities=21% Similarity=0.143 Sum_probs=61.0
Q ss_pred cEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 500 ~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
.++||+|+--+ .+|...+.+++ ++++.+..|..... .....-..||++.|-+.|.-|+-.+.-.
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~l---GLtv~~i~gg~~~~-------~r~~~y~~dIvygT~grlgfDyLrd~~~-- 192 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFL---GLTVGVIYPDMSHK-------EKQEAYKADIVYGTNNEYGFDYLRDNMA-- 192 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccc---CceEEEEeCCCCHH-------HHHHHhCCCEEEECChhhhHHHHhcCCc--
Confidence 58999999754 35888888887 68888777653221 1122235799999988874443211100
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccC
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1207)
+ .........+.++|+|||+++--. .|+--+++||.+
T Consensus 193 -----------~--~~~~~v~r~l~~~IvDEaDsiLID-----------eArtPLIISg~~ 229 (896)
T PRK13104 193 -----------F--SLTDKVQRELNFAIVDEVDSILID-----------EARTPLIISGAA 229 (896)
T ss_pred -----------c--chHhhhccccceEEeccHhhhhhh-----------ccCCceeeeCCC
Confidence 0 001123346789999999987322 234456777754
No 105
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=89.85 E-value=0.68 Score=56.28 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=75.8
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
..|||.|+- |..|=-.-+.+......+..-..-|..... .....+...+|+|+|-+.|..+++...
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k------~E~eRi~~mNILVCTPGRLLQHmde~~------- 209 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK------FELERISQMNILVCTPGRLLQHMDENP------- 209 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH------HHHHhhhcCCeEEechHHHHHHhhhcC-------
Confidence 589999997 555655555443322245554455544332 245566788999999999999876422
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChh-HHHH-HHHHHhc-cCeEEEEeccCCCCChhhhHh
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAAT-EMALRLY-AKHRWCITGTPIQRKLDDLYG 646 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~-kal~~L~-a~~RwlLTGTPIqN~l~DL~s 646 (1207)
.|..-.-.++|||||.++-... ..+. ..+..|+ .+..++.|+||.. ++.||--
T Consensus 210 --------------~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~-svkdLaR 265 (758)
T KOG0343|consen 210 --------------NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTK-SVKDLAR 265 (758)
T ss_pred --------------CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccch-hHHHHHH
Confidence 2444456789999999975443 2333 3334564 4567999999975 4666644
No 106
>PRK10536 hypothetical protein; Provisional
Probab=89.35 E-value=2.5 Score=47.93 Aligned_cols=42 Identities=29% Similarity=0.151 Sum_probs=33.7
Q ss_pred ccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCCh
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 641 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l 641 (1207)
.-..||+||||++.- .+....+.++....+++++|-|-|.++
T Consensus 176 ~~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 176 ENAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred cCCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 346899999999953 455566678889999999999988664
No 107
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=89.28 E-value=4.4 Score=47.20 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=26.3
Q ss_pred ccceeeccCccccCChh-HHHHHHHHH-h-ccCeEEEEeccCCC
Q 000967 598 FWWRICLDEAQMVESNA-AAATEMALR-L-YAKHRWCITGTPIQ 638 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~-Sk~~kal~~-L-~a~~RwlLTGTPIq 638 (1207)
.||.+|+||..-.-=.. -....++.. . .....+.||+||-.
T Consensus 202 aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 202 AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred hccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 58999999998752211 223334433 2 24568999999974
No 108
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=89.22 E-value=0.56 Score=58.52 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=84.4
Q ss_pred CCcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 498 TGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 498 ~~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
.|.||||.|. ||+..=.+.+... ++++...++.-... ..............+++..+-|.+....-
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~-e~~~v~~~l~~g~~klLyisPErl~~~~f-------- 123 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSRE-ERQQVLNQLKSGQLKLLYISPERLMSPRF-------- 123 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHH-HHHHHHHHHhcCceeEEEECchhhcChHH--------
Confidence 4899999997 6766556666553 46666666542211 00111122333458999999999887521
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh---HHHHHHHH----HhccCeEEEEeccCCCCChhhhHhhhh
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~---Sk~~kal~----~L~a~~RwlLTGTPIqN~l~DL~sLL~ 649 (1207)
+ ..|......++++||||.|-... -.-+..+. .++-.-+++||+|=-+.-..|+-..|.
T Consensus 124 ----~----------~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~ 189 (590)
T COG0514 124 ----L----------ELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLG 189 (590)
T ss_pred ----H----------HHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhc
Confidence 1 23567788899999999986543 22333443 445457999999988888888888877
Q ss_pred ccCCC
Q 000967 650 FLKSS 654 (1207)
Q Consensus 650 FL~p~ 654 (1207)
.=.+.
T Consensus 190 l~~~~ 194 (590)
T COG0514 190 LQDAN 194 (590)
T ss_pred CCCcc
Confidence 65553
No 109
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=88.76 E-value=0.95 Score=56.12 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=27.7
Q ss_pred CcEEEEeCCch-HHHHHHHHHhcCCCCCCeEEEEcCCCcc
Q 000967 499 GATLIVCPAPI-LAQWDAEITRHTRPGSLKTCIYEGARNS 537 (1207)
Q Consensus 499 ~~tLIV~P~SL-l~QW~~Ei~k~~~~g~L~V~vy~G~~~~ 537 (1207)
+|+||++|+++ ++|-...|.+- .|+|+.....+++
T Consensus 455 ~~VLvcApSNiAVDqLaeKIh~t----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 455 GPVLVCAPSNIAVDQLAEKIHKT----GLKVVRLCAKSRE 490 (935)
T ss_pred CceEEEcccchhHHHHHHHHHhc----CceEeeeehhhhh
Confidence 79999999986 68988888774 5898887765543
No 110
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=86.96 E-value=1.7 Score=55.54 Aligned_cols=123 Identities=12% Similarity=0.082 Sum_probs=65.0
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcC-----CCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhc--
Q 000967 499 GATLIVCPAPILA----QWDAEITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDL-- 567 (1207)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~-----~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~-- 567 (1207)
..++||||+.-+. +=-+++..|+ ..-.+..++|...... .....-....|+|.+.+.+.++-
T Consensus 105 ~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~-------~~~~~~~~~~vLl~~~~Afnk~~in 177 (985)
T COG3587 105 FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEK-------FKFKSNNKPCVLLIFVSAFNKEEIN 177 (985)
T ss_pred eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHH-------HhhccCCCceEEEEehhhhcccccc
Confidence 3689999975432 2233444444 3235667777522110 01222234558888888887761
Q ss_pred -ccCCCCcccchhhhhhcccCCCcccccccc--ccceeeccCccccCChhHHHHHHHHHhccCeEEEEecc
Q 000967 568 -SHDSDRHEGDRRFMRFQKRYPVIPTLLTRI--FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGT 635 (1207)
Q Consensus 568 -~~~~~~~~~~~~~~r~~kry~~~~s~L~~i--~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGT 635 (1207)
.-.+.. ++.....+.-..+|+..+ .=-.||+||-|++... .+++.++..|+...-+=-.+|
T Consensus 178 an~iN~~------s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 178 ANMINSE------SMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGAT 241 (985)
T ss_pred ccccchh------hhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHHHHHHhhCceEEEEeccc
Confidence 110000 000000000001121111 1125899999999865 789999999988777666777
No 111
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=86.88 E-value=1.5 Score=57.00 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=62.9
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
+.+-||+|+-.+. +|...+-+++ +++|-...+..... .....-.+||+..|-..|.-|+-.+.-..
T Consensus 124 ~~VhvvT~ndyLA~RD~e~m~~l~~~l---Gl~v~~i~~~~~~~-------err~~Y~~dI~YGT~~e~gFDYLrD~~~~ 193 (913)
T PRK13103 124 KGVHVVTVNDYLARRDANWMRPLYEFL---GLSVGIVTPFQPPE-------EKRAAYAADITYGTNNEFGFDYLRDNMAF 193 (913)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhccc---CCEEEEECCCCCHH-------HHHHHhcCCEEEEcccccccchhhcccee
Confidence 4688999998763 6888787777 69998887753321 22233448999999887644332111000
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccC
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTP 636 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTP 636 (1207)
.........++++|+||+|.|-=. .|+.-+++||.+
T Consensus 194 ---------------~~~~~vqr~l~~aIVDEvDsiLID-----------EArtPLIISg~~ 229 (913)
T PRK13103 194 ---------------SLDDKFQRELNFAVIDEVDSILID-----------EARTPLIISGQA 229 (913)
T ss_pred ---------------chhhhcccccceeEechhhheecc-----------ccCCceeecCCC
Confidence 001234567889999999987322 233456777753
No 112
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=86.25 E-value=4 Score=55.52 Aligned_cols=61 Identities=18% Similarity=0.080 Sum_probs=39.9
Q ss_pred CCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCcc-ccCChhHHHHHHHHHh-c---c
Q 000967 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ-MVESNAAAATEMALRL-Y---A 626 (1207)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH-~IKN~~Sk~~kal~~L-~---a 626 (1207)
...|++.|.+.|..++... ++ --.++.||||||| +.-|..-... .++.+ . .
T Consensus 163 ~t~I~v~TpG~LL~~l~~d----------------------~~-Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpd 218 (1294)
T PRK11131 163 NTMVKLMTDGILLAEIQQD----------------------RL-LMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPD 218 (1294)
T ss_pred CCCEEEEChHHHHHHHhcC----------------------Cc-cccCcEEEecCccccccccchHHH-HHHHhhhcCCC
Confidence 4679999999999876421 11 2357889999999 5555443222 23333 2 2
Q ss_pred CeEEEEeccC
Q 000967 627 KHRWCITGTP 636 (1207)
Q Consensus 627 ~~RwlLTGTP 636 (1207)
...+++|+|.
T Consensus 219 lKvILmSATi 228 (1294)
T PRK11131 219 LKVIITSATI 228 (1294)
T ss_pred ceEEEeeCCC
Confidence 4678999997
No 113
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.59 E-value=2.5 Score=49.87 Aligned_cols=107 Identities=19% Similarity=0.326 Sum_probs=74.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhc-cCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
-.+||..|.. |..|=+-|..+..-.+...+++|.|.++.. +..++ ...+|+|.|-..|..-...
T Consensus 295 p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e-------qie~lkrgveiiiatPgrlndL~~~------- 360 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-------QIEDLKRGVEIIIATPGRLNDLQMD------- 360 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh-------HHHHHhcCceEEeeCCchHhhhhhc-------
Confidence 4689999987 567888898888777778889998876542 33444 4689999998887653210
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhccCeEEEEec
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWCITG 634 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~~RwlLTG 634 (1207)
..+.--.--++|||||.++-... -+..+.+..++.++-.+||-
T Consensus 361 ---------------n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 361 ---------------NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred ---------------CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeec
Confidence 01222234589999999875543 67778888887776665553
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=85.31 E-value=3.5 Score=53.81 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=67.4
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
+.+.||+|+--+ ..|...+.+|. +++|....|.... ......-.+||+..|-..|.-|+-.+.-.
T Consensus 124 ~~VhIvT~ndyLA~RD~e~m~~l~~~l---Glsv~~i~~~~~~-------~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~- 192 (908)
T PRK13107 124 KGVHVITVNDYLARRDAENNRPLFEFL---GLTVGINVAGLGQ-------QEKKAAYNADITYGTNNEFGFDYLRDNMA- 192 (908)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhc---CCeEEEecCCCCH-------HHHHhcCCCCeEEeCCCcccchhhhccCc-
Confidence 458999998754 47999999998 6888776554221 01222235789988877664443221100
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL 648 (1207)
..+..+....++.+|+||+..+--.. |+.-+++||.+ ... .++|..+
T Consensus 193 --------------~~~~~~vqr~~~~aIvDEvDsiLiDE-----------ArtPLIISg~~-~~~-~~~y~~~ 239 (908)
T PRK13107 193 --------------FSPQERVQRPLHYALIDEVDSILIDE-----------ARTPLIISGAA-EDS-SELYIKI 239 (908)
T ss_pred --------------cchhhhhccccceeeecchhhhcccc-----------CCCceeecCCC-ccc-hHHHHHH
Confidence 00112344677899999998764333 44567888854 333 4555543
No 115
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=85.08 E-value=5 Score=53.35 Aligned_cols=114 Identities=11% Similarity=0.221 Sum_probs=68.9
Q ss_pred cEEEEeC-CchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHH---HhhhcccCCCCcc
Q 000967 500 ATLIVCP-APILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDV---LKEDLSHDSDRHE 575 (1207)
Q Consensus 500 ~tLIV~P-~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYet---L~~d~~~~~~~~~ 575 (1207)
...-|+| .+|+.-|...|.++..+=+++|.-..|.... ....+..-.|+++|-+. +.+. .
T Consensus 366 KIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l--------~~~qieeTqVIV~TPEK~DiITRk--------~ 429 (1674)
T KOG0951|consen 366 KIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL--------GKEQIEETQVIVTTPEKWDIITRK--------S 429 (1674)
T ss_pred eEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc--------hhhhhhcceeEEeccchhhhhhcc--------c
Confidence 4556667 5899999999999998656666667776443 23445566788887553 3332 1
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCcccc---CChh--HHHHHHHHHhc----cCeEEEEeccCCCCChhhhHh
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV---ESNA--AAATEMALRLY----AKHRWCITGTPIQRKLDDLYG 646 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I---KN~~--Sk~~kal~~L~----a~~RwlLTGTPIqN~l~DL~s 646 (1207)
+++... --+..+|+||.|++ +.+. |-.++..++.. ..+-.+||+|- + |.+|.-+
T Consensus 430 gdraY~---------------qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATL-P-Ny~DV~~ 492 (1674)
T KOG0951|consen 430 GDRAYE---------------QLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATL-P-NYEDVAS 492 (1674)
T ss_pred CchhHH---------------HHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccC-C-chhhhHH
Confidence 221110 12456899999999 3322 33444444442 34567899993 2 3455544
No 116
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=84.86 E-value=2.7 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=18.3
Q ss_pred cceeecCCCcchHHHHHHHHHHh
Q 000967 359 GGILADEMGLGKTVELLACIFAH 381 (1207)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~~ 381 (1207)
.|+|-+-.|.|||+-.|+-.++-
T Consensus 42 ~~llESPTGTGKSLsLLCS~LAW 64 (945)
T KOG1132|consen 42 NGLLESPTGTGKSLSLLCSTLAW 64 (945)
T ss_pred hhhccCCCCCCccHHHHHHHHHH
Confidence 46777888999999988766654
No 117
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=83.98 E-value=5.3 Score=53.00 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=46.1
Q ss_pred cCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHHHHH-hc-cC
Q 000967 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALR-LY-AK 627 (1207)
Q Consensus 551 ~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~-L~-a~ 627 (1207)
.++.+++.|-+.|++-+.... ..+.. -..||+||.|.|.... .-.++-+-. ++ ..
T Consensus 204 ~~A~clvMTTEILRnMlyrg~--------------------~~~~~--i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 204 PDAPCLVMTTEILRNMLYRGS--------------------ESLRD--IEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred CCCceEEeeHHHHHHHhccCc--------------------ccccc--cceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 457788888899998764311 11222 3469999999998765 344443333 33 34
Q ss_pred eEEEEeccCCCCChhhhHhhhh
Q 000967 628 HRWCITGTPIQRKLDDLYGLLR 649 (1207)
Q Consensus 628 ~RwlLTGTPIqN~l~DL~sLL~ 649 (1207)
.-++||+| +. |..|+-..+.
T Consensus 262 ~~v~LSAT-v~-N~~EF~~Wi~ 281 (1041)
T COG4581 262 RFVFLSAT-VP-NAEEFAEWIQ 281 (1041)
T ss_pred cEEEEeCC-CC-CHHHHHHHHH
Confidence 78899999 33 3444444433
No 118
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=83.49 E-value=0.67 Score=45.36 Aligned_cols=82 Identities=11% Similarity=-0.054 Sum_probs=49.7
Q ss_pred cchHHHHHhHHHHHHHHHHHhhhhH---HHHHHH--HHHHHHHHhhccCCCCc----------------ceeEEecCCCC
Q 000967 822 LRKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPLL----------------NIHLHHNLTEI 880 (1207)
Q Consensus 822 ~rkvLifsq~la~L~iLe~~l~~a~---~~y~~~--l~~~~e~~~~fr~D~~~----------------~lh~~~Nl~dw 880 (1207)
..++|+|.+.......+.+.+.... ..+.+. ...+...++.|+.+... .-|+.+--.+|
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~ 107 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW 107 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC
Confidence 3678888888877777777665421 111111 12334444555544421 11344444479
Q ss_pred Cccchhhhh-hhhccCCCCceEEE
Q 000967 881 LPMVANCAT-ELSQNEQHFPGCSE 903 (1207)
Q Consensus 881 npa~d~QA~-R~~riGQ~~~v~vy 903 (1207)
++....|+. |++|.||+..|.+|
T Consensus 108 ~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 108 SPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CHHHheecccccccCCCCceEEeC
Confidence 999999999 99999997766543
No 119
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=82.90 E-value=3 Score=54.32 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=61.2
Q ss_pred cEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 500 ATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 500 ~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
.+-||+|+..+. +|...+-+++ ++++.+..|..... .....-..||++.|...|.-|+-.+.-.
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~L---Glsv~~i~~~~~~~-------er~~~y~~dI~ygT~~elgfDyLrd~~~-- 191 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFL---GLSVGVILSGMSPE-------ERREAYAADITYGTNNEFGFDYLRDNMV-- 191 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhc---CCeEEEEcCCCCHH-------HHHHhcCCCeEEECCcchhhhhhhcccc--
Confidence 356999998663 5888887777 68888887753321 1112234899999988886554221100
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCC
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPI 637 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPI 637 (1207)
+ ....+....+.++|+|||..+-=. .|+.-+++||.+-
T Consensus 192 -----------~--~~~~~~~r~~~~aIvDEaDsiLID-----------eArtpLiiSg~~~ 229 (830)
T PRK12904 192 -----------F--SLEERVQRGLNYAIVDEVDSILID-----------EARTPLIISGPAE 229 (830)
T ss_pred -----------c--chhhhcccccceEEEechhhheec-----------cCCCceeeECCCC
Confidence 0 011234456788999999876322 2344567777643
No 121
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=79.59 E-value=6.8 Score=48.39 Aligned_cols=126 Identities=18% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
.+.+|.++|.- |..|=..+|.+-..+=.+++.+--|..+-+.... ........++||++-||+-+---+..
T Consensus 261 g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~-pv~~~t~~dADIIVGTYEGiD~lLRt------- 332 (830)
T COG1202 261 GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE-PVVVDTSPDADIIVGTYEGIDYLLRT------- 332 (830)
T ss_pred CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCC-ccccCCCCCCcEEEeechhHHHHHHc-------
Confidence 57899999986 5567777887766555677777777654332111 12345567899999999975432210
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHh----ccCeEEEEeccCCCCChhhhHhhhh
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL----YAKHRWCITGTPIQRKLDDLYGLLR 649 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L----~a~~RwlLTGTPIqN~l~DL~sLL~ 649 (1207)
.+ .| -+-..||+||.|++.... ...--.+.+| +.-..+.||+| -.|+.||-..|.
T Consensus 333 -------g~-------~l--gdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSAT--VgNp~elA~~l~ 393 (830)
T COG1202 333 -------GK-------DL--GDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSAT--VGNPEELAKKLG 393 (830)
T ss_pred -------CC-------cc--cccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEee--cCChHHHHHHhC
Confidence 00 01 234679999999998632 3333444444 33567889999 456777766543
No 122
>PRK14873 primosome assembly protein PriA; Provisional
Probab=79.34 E-value=6.3 Score=50.63 Aligned_cols=107 Identities=7% Similarity=-0.080 Sum_probs=65.0
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+||++|. ++..|+..-|+..++ .-.+.+||+.-........ ......+..+|||=|+..+-.
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~-w~~~~~G~~~IViGtRSAvFa------------ 253 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRR-WLAVLRGQARVVVGTRSAVFA------------ 253 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHH-HHHHhCCCCcEEEEcceeEEe------------
Confidence 569999997 588999999999985 4678889985432111000 112223557789877765432
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccc--cCChhHHHH--HHH----HHhccCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAAT--EMA----LRLYAKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~--IKN~~Sk~~--kal----~~L~a~~RwlLTGTPI 637 (1207)
|+. +..+||+||=|- .|...+..+ +-+ ..+..-.-++-|+||-
T Consensus 254 ---------------P~~--~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 254 ---------------PVE--DLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred ---------------ccC--CCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 222 457899999884 554432221 111 1233445667799985
No 123
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=79.24 E-value=1.3 Score=46.93 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=28.8
Q ss_pred hhhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccc-cccccceeeccCccccCCh
Q 000967 547 ISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESN 613 (1207)
Q Consensus 547 ~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~ 613 (1207)
......+||||++|..|-..... . ... ....-..||+||||+|.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~---------~------------~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIR---------K------------SLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHH---------H------------HHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHH---------h------------hhccccccCcEEEEecccchHHH
Confidence 34456789999999998765311 0 011 2234458999999999653
No 124
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=78.92 E-value=5.6 Score=48.23 Aligned_cols=110 Identities=23% Similarity=0.221 Sum_probs=64.7
Q ss_pred cEEEEeCCchH-HHHHHHHHhcCCC-CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 500 ATLIVCPAPIL-AQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 500 ~tLIV~P~SLl-~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.+|||||+--+ .|=..|.++-..- .++.|.+.-|..+.+.. ...-.....|+|.|-+.|..++.....
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e-----~~kl~k~~niliATPGRLlDHlqNt~~----- 225 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE-----ADKLVKGCNILIATPGRLLDHLQNTSG----- 225 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH-----HHHhhccccEEEeCCchHHhHhhcCCc-----
Confidence 58999999744 5766665543321 15677666665443221 111112578999999999887654221
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEecc
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGT 635 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGT 635 (1207)
+.-..-..+|+|||.+|-... --.-+.+..|+ .+..++.|+|
T Consensus 226 ----------------f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT 270 (543)
T KOG0342|consen 226 ----------------FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSAT 270 (543)
T ss_pred ----------------chhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCC
Confidence 222222789999999985432 22223333343 3456888888
No 125
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=78.76 E-value=16 Score=39.51 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=24.5
Q ss_pred ccceeeccCccccCChhHHHHHHHHHhcc-CeEEEEeccCCC
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQ 638 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a-~~RwlLTGTPIq 638 (1207)
..++||+|||.++.+. .....+..+.. ..++++-|-|-|
T Consensus 93 ~~~vliVDEasmv~~~--~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSR--QLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp STSEEEESSGGG-BHH--HHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred cccEEEEecccccCHH--HHHHHHHHHHhcCCEEEEECCcch
Confidence 3468999999999643 33344444443 679999999877
No 126
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=78.41 E-value=5.1 Score=49.76 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=25.6
Q ss_pred ccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCC
Q 000967 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1207)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIq 638 (1207)
+.+..|+.||+|||-..--+ +.+-.+ | ...+++|.|-|.|
T Consensus 354 ~~~~~fD~vIIDEaaQamE~--~cWipv--l-k~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 354 LRKRTFDLVIIDEAAQAMEP--QCWIPV--L-KGKKFILAGDPKQ 393 (649)
T ss_pred hcccCCCEEEEehhhhhccc--hhhhHH--h-cCCceEEeCCccc
Confidence 44567999999998543322 222222 2 2339999999987
No 127
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=78.26 E-value=7.2 Score=46.17 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.2
Q ss_pred cccccceeeccCccccCC
Q 000967 595 TRIFWWRICLDEAQMVES 612 (1207)
Q Consensus 595 ~~i~w~rVILDEAH~IKN 612 (1207)
..-.++.||+||||++..
T Consensus 80 ~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred cCCcCCEEEEehhHhhhh
Confidence 345689999999999986
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=76.88 E-value=8.2 Score=49.52 Aligned_cols=119 Identities=14% Similarity=0.091 Sum_probs=68.5
Q ss_pred CcEEEEeCCchHH----HHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPAPILA----QWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~SLl~----QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
+.+-||+|+..+. +|...+-+++ +++|....+..... .....-.+||+-+|-..|.-|+-.+.-..
T Consensus 120 ~~VhvvT~NdyLA~RDae~m~~ly~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~~ 189 (764)
T PRK12326 120 RRVHVITVNDYLARRDAEWMGPLYEAL---GLTVGWITEESTPE-------ERRAAYACDVTYASVNEIGFDVLRDQLVT 189 (764)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHhc---CCEEEEECCCCCHH-------HHHHHHcCCCEEcCCcccccccchhhhcc
Confidence 5688999998773 6888888888 69998877653321 22333467877666555444432111000
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCC-CChhhhHhhhhccCC
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ-RKLDDLYGLLRFLKS 653 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIq-N~l~DL~sLL~FL~p 653 (1207)
.+.......++.+|+||+..+-=. .++.-+++||.+-. +.....+.+..-|..
T Consensus 190 ---------------~~~~~v~R~~~faIVDEvDSiLID-----------eArtPLiISg~~~~~~~y~~~~~~v~~L~~ 243 (764)
T PRK12326 190 ---------------DVADLVSPNPDVAIIDEADSVLVD-----------EALVPLVLAGSTPGEAPRGEIAELVRRLRE 243 (764)
T ss_pred ---------------ChHhhcCCccceeeecchhhheec-----------cccCceeeeCCCcchhHHHHHHHHHHhcCc
Confidence 011234456889999999865321 25566788885532 233333344444433
No 129
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=76.17 E-value=9.3 Score=52.28 Aligned_cols=62 Identities=16% Similarity=0.005 Sum_probs=38.6
Q ss_pred CCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCcc-ccCChhHHHH--HHHHH-hccC
Q 000967 552 GADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQ-MVESNAAAAT--EMALR-LYAK 627 (1207)
Q Consensus 552 ~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH-~IKN~~Sk~~--kal~~-L~a~ 627 (1207)
.-.|+++|.+.|.+.+..+ ++ --.++.||+|||| +.-|..-... +.+.. .+.-
T Consensus 156 ~T~I~~~TdGiLLr~l~~d----------------------~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdL 212 (1283)
T TIGR01967 156 NTLVKLMTDGILLAETQQD----------------------RF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDL 212 (1283)
T ss_pred CceeeeccccHHHHHhhhC----------------------cc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCC
Confidence 4569999999998876421 11 1357789999999 4555443221 22211 1234
Q ss_pred eEEEEeccC
Q 000967 628 HRWCITGTP 636 (1207)
Q Consensus 628 ~RwlLTGTP 636 (1207)
..+++|+|.
T Consensus 213 KlIlmSATl 221 (1283)
T TIGR01967 213 KIIITSATI 221 (1283)
T ss_pred eEEEEeCCc
Confidence 578999997
No 130
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.87 E-value=11 Score=45.76 Aligned_cols=110 Identities=20% Similarity=0.184 Sum_probs=66.9
Q ss_pred cEEEEeCCc-hHHH---HHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 500 ATLIVCPAP-ILAQ---WDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~Q---W~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
..|||.|+- |..| =...|..|++ .++...+.|...... ....-.-....|+|-|-+.|..-+.+..
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~--~l~~~l~vGG~~v~~----Di~~fkee~~nIlVgTPGRL~di~~~~~---- 150 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLP--NLNCELLVGGRSVEE----DIKTFKEEGPNILVGTPGRLLDILQREA---- 150 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhh--ccceEEEecCccHHH----HHHHHHHhCCcEEEeCchhHHHHHhchh----
Confidence 579999986 3334 4455666665 788888888754321 0111112346799999988876554311
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhccCeEEE-Eecc
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAKHRWC-ITGT 635 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~~Rwl-LTGT 635 (1207)
..+.-..-..+|||||.++-... ...-..+..|+..+|-+ .|+|
T Consensus 151 ----------------~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSAT 197 (567)
T KOG0345|consen 151 ----------------EKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSAT 197 (567)
T ss_pred ----------------hhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccch
Confidence 01223345689999999986543 45555666677666653 3555
No 131
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=73.75 E-value=26 Score=44.97 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=27.9
Q ss_pred cccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCC
Q 000967 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1207)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIq 638 (1207)
.|....|+.||+|||-.+-.+.+ +-.|....+++|-|=|.|
T Consensus 356 ~l~~~~Fd~vIIDEAsQ~~ep~~-----lipl~~~~~~vLvGD~~Q 396 (637)
T TIGR00376 356 GLKGWEFDVAVIDEASQAMEPSC-----LIPLLKARKLILAGDHKQ 396 (637)
T ss_pred hhccCCCCEEEEECccccchHHH-----HHHHhhCCeEEEecChhh
Confidence 46678999999999966644432 112222348899998887
No 132
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=73.53 E-value=1.6 Score=54.17 Aligned_cols=36 Identities=42% Similarity=0.912 Sum_probs=31.0
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCC
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~ 450 (1207)
....|+|+...+. .|..++|+.|..|||+.|+|+-.
T Consensus 85 ~~~~c~c~~~~~~---~g~~i~c~~c~~Wqh~~C~g~~~ 120 (508)
T KOG1844|consen 85 EISRCDCGLEDDM---EGLMIQCDWCGRWQHKICCGSFK 120 (508)
T ss_pred cccccccccccCC---CceeeCCcccCcccCceeeeecC
Confidence 4578999998775 68889999999999999998654
No 133
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.64 E-value=9.7 Score=46.73 Aligned_cols=106 Identities=17% Similarity=0.292 Sum_probs=64.1
Q ss_pred EEEEeCCc-hHHHHHHHHHhcCCCCCCeE----EEEcCCCccccccccchhhhhc-cCCcEEEEehHHHhhhcccCCCCc
Q 000967 501 TLIVCPAP-ILAQWDAEITRHTRPGSLKT----CIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 501 tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V----~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
.|||+|+- |..|=.+-+.+...+ +.. ++.-|.++.. ..+.+ ...+|+|-|-+.|..++.+....
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~--~hWIVPg~lmGGEkkKS-------EKARLRKGiNILIgTPGRLvDHLknT~~i- 283 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKP--FHWIVPGVLMGGEKKKS-------EKARLRKGINILIGTPGRLVDHLKNTKSI- 283 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcC--ceEEeeceeeccccccc-------HHHHHhcCceEEEcCchHHHHHHhccchh-
Confidence 69999996 777888888887653 222 2233433322 22223 34789999999998877542211
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCccccCC-----hhHHHHHHHHHhc---c--------CeEEEEeccC
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-----NAAAATEMALRLY---A--------KHRWCITGTP 636 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN-----~~Sk~~kal~~L~---a--------~~RwlLTGTP 636 (1207)
.+..+ ..||+|||.+|-. .-+++.+++..++ + .-+++||+|-
T Consensus 284 ------------------~~s~L--RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATL 341 (708)
T KOG0348|consen 284 ------------------KFSRL--RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATL 341 (708)
T ss_pred ------------------eeeee--eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhh
Confidence 13333 4599999999743 2356666664321 1 2356788874
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=69.62 E-value=7 Score=47.99 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.9
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEE
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCI 530 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~v 530 (1207)
+||||++|+ +|..|-..||+.|+|......+|
T Consensus 58 rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFV 90 (663)
T COG0556 58 RPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFV 90 (663)
T ss_pred CCeEEEecchhHHHHHHHHHHHhCcCcceEEEe
Confidence 699999997 56689999999999977666555
No 135
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=69.62 E-value=2.7 Score=48.44 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=29.5
Q ss_pred hhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCC
Q 000967 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1207)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1207)
.....+||||++|..|-.+.... .+ -....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~---------~~------------~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 207 KAIEFANVVVLPYQYLLDPKIRQ---------AL------------SIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHH---------Hh------------cccccccEEEEeCccChHH
Confidence 34578999999999997653110 00 0012467899999999964
No 136
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=69.62 E-value=2.7 Score=48.44 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=29.5
Q ss_pred hhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCC
Q 000967 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1207)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1207)
.....+||||++|..|-.+.... .+ -....-..||+||||++..
T Consensus 207 ~~~~~Adivi~ny~yll~~~~r~---------~~------------~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 207 KAIEFANVVVLPYQYLLDPKIRQ---------AL------------SIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred HHhhcCCEEEECHHHHhcHHHHH---------Hh------------cccccccEEEEeCccChHH
Confidence 34578999999999997653110 00 0012467899999999964
No 137
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=69.45 E-value=2.1 Score=48.95 Aligned_cols=49 Identities=37% Similarity=0.848 Sum_probs=37.9
Q ss_pred hhhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 411 RERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 411 ~~~v~cic~~~~~~~~~~g~~v~c~~--c~-~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
++...|+|...+ -|..|.||. |. .|-|-.|||.... +-+..+|+.|..
T Consensus 217 ~e~~yC~Cnqvs-----yg~Mi~CDn~~C~~eWFH~~CVGL~~~------------------------PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 217 DEPTYCICNQVS-----YGKMIGCDNPGCPIEWFHFTCVGLKTK------------------------PKGKWYCPRCKA 267 (274)
T ss_pred CCCEEEEecccc-----cccccccCCCCCCcceEEEeccccccC------------------------CCCcccchhhhh
Confidence 345678998544 378999999 99 8999999997643 346689999975
Q ss_pred h
Q 000967 488 L 488 (1207)
Q Consensus 488 ~ 488 (1207)
.
T Consensus 268 ~ 268 (274)
T KOG1973|consen 268 E 268 (274)
T ss_pred h
Confidence 3
No 138
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=67.59 E-value=9.9 Score=46.57 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=58.1
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
..+|++|+- |..|=+.|-.+|..+-+++++..-|...-. .....-...++|||.|-..|-..+..
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~E-----Eq~fqls~gceiviatPgrLid~Len--------- 389 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFE-----EQGFQLSMGCEIVIATPGRLIDSLEN--------- 389 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchh-----hhhhhhhccceeeecCchHHHHHHHH---------
Confidence 478899987 668999999999877677777666543210 01223335688999999888765431
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1207)
..|..-.--+||+|||.++-.
T Consensus 390 -------------r~lvl~qctyvvldeadrmiD 410 (673)
T KOG0333|consen 390 -------------RYLVLNQCTYVVLDEADRMID 410 (673)
T ss_pred -------------HHHHhccCceEeccchhhhhc
Confidence 124444566899999997643
No 139
>KOG4284 consensus DEAD box protein [Transcription]
Probab=64.64 E-value=18 Score=45.49 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=79.4
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCC-CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
-.+||+|+- |--|-.+-|.+.++. .+++..+|-|..... .+...+.+..|+|-|-+.+..-+..
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~------~d~~rlk~~rIvIGtPGRi~qL~el-------- 160 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHK------LDLIRLKQTRIVIGTPGRIAQLVEL-------- 160 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhh------hhhhhhhhceEEecCchHHHHHHHh--------
Confidence 479999997 445777777666541 368899999876542 2556677788999999998875532
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhH---HHHHHHHHhcc-CeEEEEeccCCCCChhhhH
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA---AATEMALRLYA-KHRWCITGTPIQRKLDDLY 645 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S---k~~kal~~L~a-~~RwlLTGTPIqN~l~DL~ 645 (1207)
..+..-+-++.|||||..+-...| .....+..|+. +..+++|+|=-+| |+++.
T Consensus 161 --------------~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ldn~L 217 (980)
T KOG4284|consen 161 --------------GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-LDNLL 217 (980)
T ss_pred --------------cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-HHHHH
Confidence 123444567899999999876554 34445556654 5678899995544 55543
No 140
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=64.36 E-value=5.6 Score=39.20 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=27.5
Q ss_pred ceeeccCccccCChhHHHHHHHHHh--ccCeEEEEeccC
Q 000967 600 WRICLDEAQMVESNAAAATEMALRL--YAKHRWCITGTP 636 (1207)
Q Consensus 600 ~rVILDEAH~IKN~~Sk~~kal~~L--~a~~RwlLTGTP 636 (1207)
..||+||+|.+. +......++.+ ...-.++|.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25556666666 567789999999
No 141
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=64.06 E-value=14 Score=48.18 Aligned_cols=98 Identities=7% Similarity=-0.064 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHh--hcc------------
Q 000967 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYK---EAMAVVEEHSE--DFR------------ 864 (1207)
Q Consensus 802 t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~---~~l~~~~e~~~--~fr------------ 864 (1207)
+.++-...+++.+.. ..+.++.+|||++.......|.+.|.+....+. .-....+..+- .++
T Consensus 421 t~~~K~~al~~~i~~-~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~VtIATnmAG 499 (796)
T PRK12906 421 TLDSKFNAVVKEIKE-RHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGAVTIATNMAG 499 (796)
T ss_pred CHHHHHHHHHHHHHH-HHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCceEEEEecccc
Confidence 455555555555442 334679999999999999999888776633221 11112222211 111
Q ss_pred --CCC----C----cceeEEecCCCCCccchhhhh-hhhccCCCCce
Q 000967 865 --LDP----L----LNIHLHHNLTEILPMVANCAT-ELSQNEQHFPG 900 (1207)
Q Consensus 865 --~D~----~----~~lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v 900 (1207)
+|- - --+|++..-..=++-.++|.. |+-|-|.+=..
T Consensus 500 RGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 500 RGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred CCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 111 1 112555444456778999999 99999986443
No 142
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=63.68 E-value=4.6 Score=52.23 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=33.6
Q ss_pred hhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChh
Q 000967 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1207)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1207)
.....+|||||++..|-.++... . ...|.......+|+||||.+....
T Consensus 215 ~~a~~AdivVtNH~LLladl~~~-~------------------~~iLp~~~~~~lViDEAH~L~d~A 262 (697)
T PRK11747 215 REIDEADVVVANHDLVLADLELG-G------------------GVVLPDPENLLYVLDEGHHLPDVA 262 (697)
T ss_pred HHHhhCCEEEECcHHHHhhhhcc-C------------------CcccCCCCCCEEEEECccchHHHH
Confidence 34577899999999998876310 0 013434467889999999997443
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=63.14 E-value=18 Score=46.84 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=54.8
Q ss_pred CcEEEEe-CCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVC-PAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~-P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||. =.+++.+-..-+++.--+ .+..|....... -....++-+++..+.|.+...
T Consensus 79 ~~VLvVShRrSL~~sL~~rf~~~~l~---gFv~Y~d~~~~~---------i~~~~~~rLivqIdSL~R~~~--------- 137 (824)
T PF02399_consen 79 KSVLVVSHRRSLTKSLAERFKKAGLS---GFVNYLDSDDYI---------IDGRPYDRLIVQIDSLHRLDG--------- 137 (824)
T ss_pred CeEEEEEhHHHHHHHHHHHHhhcCCC---cceeeecccccc---------ccccccCeEEEEehhhhhccc---------
Confidence 3566664 345666666666543211 334454433211 111357899999999876421
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh-hH-------HHHHHHHHh--ccCeEEEEecc
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-AA-------AATEMALRL--YAKHRWCITGT 635 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~S-------k~~kal~~L--~a~~RwlLTGT 635 (1207)
..+ -.|+.|||||+-.+-+. .| .....+..+ ++++.+++-||
T Consensus 138 --------------~~l--~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ 189 (824)
T PF02399_consen 138 --------------SLL--DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDAD 189 (824)
T ss_pred --------------ccc--cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCC
Confidence 012 13999999998543221 11 122223332 58888999988
No 144
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=61.68 E-value=16 Score=46.77 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=26.8
Q ss_pred CcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccc
Q 000967 553 ADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM 609 (1207)
Q Consensus 553 ~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~ 609 (1207)
-.|-++|-+.|.+++.+ -+.-..+..|||||||.
T Consensus 350 T~IkFMTDGVLLrEi~~-----------------------DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 350 TSIKFMTDGVLLREIEN-----------------------DFLLTKYSVIILDEAHE 383 (1172)
T ss_pred ceeEEecchHHHHHHHH-----------------------hHhhhhceeEEechhhh
Confidence 45889999999998764 24455678999999995
No 145
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=60.19 E-value=73 Score=36.51 Aligned_cols=87 Identities=18% Similarity=0.067 Sum_probs=49.6
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
+++=||+.+.-+ .+|...|-+++ ++.+-...+.... ......-..||+-+|-..+..++-.+.-.
T Consensus 119 ~~V~vvT~NdyLA~RD~~~~~~~y~~L---Glsv~~~~~~~~~-------~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~- 187 (266)
T PF07517_consen 119 KGVHVVTSNDYLAKRDAEEMRPFYEFL---GLSVGIITSDMSS-------EERREAYAADIVYGTNSEFGFDYLRDNLA- 187 (266)
T ss_dssp S-EEEEESSHHHHHHHHHHHHHHHHHT---T--EEEEETTTEH-------HHHHHHHHSSEEEEEHHHHHHHHHHHTT--
T ss_pred CCcEEEeccHHHhhccHHHHHHHHHHh---hhccccCccccCH-------HHHHHHHhCcccccccchhhHHHHHHHHh-
Confidence 457777777655 37999999998 6888776654321 02223445788888877777654211100
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCcccc
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1207)
..........++.+|+||+..+
T Consensus 188 --------------~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 188 --------------LSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp --------------SSGGG--SSSSSEEEECTHHHH
T ss_pred --------------hccchhccCCCCEEEEeccceE
Confidence 0011123456788999998754
No 146
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=60.01 E-value=34 Score=41.96 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=65.8
Q ss_pred CCCCcE-EEEeCC-chHHHHHHHHHhcCCCCCCeEEE-EcCCCccccccccchhhhhc-cCCcEEEEehHHHhhhcccCC
Q 000967 496 VATGAT-LIVCPA-PILAQWDAEITRHTRPGSLKTCI-YEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDS 571 (1207)
Q Consensus 496 ~~~~~t-LIV~P~-SLl~QW~~Ei~k~~~~g~L~V~v-y~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~ 571 (1207)
..-+|+ ||+||+ .+..|-..|.++|...=+|+++. |.|..+.. +...+ ..+.||+.|-+.|-..+.-
T Consensus 293 ~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~e-------Q~k~Lk~g~EivVaTPgRlid~Vkm-- 363 (731)
T KOG0339|consen 293 PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWE-------QSKELKEGAEIVVATPGRLIDMVKM-- 363 (731)
T ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHH-------HHHhhhcCCeEEEechHHHHHHHHh--
Confidence 345665 556686 47889999999996544677654 55544322 22222 5678999999988765421
Q ss_pred CCcccchhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhccC-eEEEEecc
Q 000967 572 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAK-HRWCITGT 635 (1207)
Q Consensus 572 ~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~-~RwlLTGT 635 (1207)
....-.+-.++|+|||.++-... .+.-.....++.+ ..++.++|
T Consensus 364 --------------------Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaT 410 (731)
T KOG0339|consen 364 --------------------KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSAT 410 (731)
T ss_pred --------------------hcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeecc
Confidence 01122234578999999886543 2222223335443 35666666
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=58.27 E-value=6.9 Score=49.89 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=30.0
Q ss_pred ccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChh
Q 000967 550 LVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA 614 (1207)
Q Consensus 550 l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~ 614 (1207)
...+|||||++..|..+.... . ..| -..+.||+||||.+....
T Consensus 180 a~~AdivItNHalL~~~~~~~----------------~----~iL--P~~~~lIiDEAH~L~d~A 222 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDK----------------W----GLL--PQPDILIVDEAHLFEQNI 222 (636)
T ss_pred cccCCEEEECHHHHHHHhhhh----------------c----CCC--CCCCEEEEeCCcchHHHH
Confidence 577899999999998753110 0 122 236899999999997543
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.85 E-value=6.1 Score=51.24 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=40.4
Q ss_pred HHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccc
Q 000967 515 AEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLL 594 (1207)
Q Consensus 515 ~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L 594 (1207)
+|+.++.. ...++.|... ...+..+||||.+|..|-..... + ..-
T Consensus 172 EdL~~~g~--~~~~CPY~~s------------r~~~~~advIi~pYnyl~dp~~r---------~------------~~~ 216 (705)
T TIGR00604 172 EDLVEYGE--LLGLCPYFAT------------RKMLPFANIVLLPYQYLLDPKIR---------S------------AVS 216 (705)
T ss_pred HHHHHhcc--cCCCCccHHH------------HHhhhcCCEEEechHHhcCHHHH---------H------------Hhh
Confidence 45555553 5566777753 34557899999999988643110 0 011
Q ss_pred cccccceeeccCccccCCh
Q 000967 595 TRIFWWRICLDEAQMVESN 613 (1207)
Q Consensus 595 ~~i~w~rVILDEAH~IKN~ 613 (1207)
..+.-..||+||||+|.+.
T Consensus 217 ~~l~~~ivI~DEAHNL~d~ 235 (705)
T TIGR00604 217 IELKDSIVIFDEAHNLDNV 235 (705)
T ss_pred cccccCEEEEECccchHHH
Confidence 2234478999999999653
No 149
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=56.59 E-value=27 Score=43.21 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=45.5
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcc
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLS 568 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~ 568 (1207)
-.|||+|+- |..|-.+.|...++...+++..+.|.-.... ...---...||||.|-+.|..-+.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK-----QqRlL~~~p~IVVATPGRlweli~ 329 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK-----QQRLLNQRPDIVVATPGRLWELIE 329 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH-----HHHHHhcCCCEEEecchHHHHHHH
Confidence 479999996 7789888888887777899998888532110 011111267899999999887654
No 150
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=56.30 E-value=8.4 Score=46.40 Aligned_cols=76 Identities=24% Similarity=0.523 Sum_probs=45.7
Q ss_pred hhhhhcccccccccccccccccccccccccccccCcCCC---CCcccchhhhhhhcccccccccccccCccccccchhhh
Q 000967 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPR---GKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1207)
Q Consensus 413 ~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~ 489 (1207)
+-.|+|..... ..-.-.|+.|+.|+-|.|.+|---... |.. ....+-..+..|.|..|..
T Consensus 129 C~C~iC~kfD~-~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s--------------~~g~~g~~d~~f~C~~C~~-- 191 (446)
T PF07227_consen 129 CMCCICSKFDD-NKNTCSWIGCDVCGHWCHLDCALRHELIGTGPS--------------VKGSIGTLDMQFHCRACGK-- 191 (446)
T ss_pred CCccccCCccc-CCCCeeEEeccCCCceehhhhhcccccccCCcc--------------CCCCCccCceEEEccCCCC--
Confidence 44556765422 223347999999999999999632111 100 0011122477899999975
Q ss_pred hccCCCCCCCcEEEEeCCchHHHHHHHHHhcC
Q 000967 490 EATDSPVATGATLIVCPAPILAQWDAEITRHT 521 (1207)
Q Consensus 490 ~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~ 521 (1207)
++-++..|++-|....
T Consensus 192 ----------------~seLlG~vk~vf~~ca 207 (446)
T PF07227_consen 192 ----------------TSELLGFVKKVFQTCA 207 (446)
T ss_pred ----------------hhhHHHHHHHHHHHHH
Confidence 2446777777776654
No 151
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=55.43 E-value=47 Score=39.28 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=69.9
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
=.||+.|+. +..|=.+.|.---.+-.+++.++.|....-. ....-....++|++|-+.+.-.+....+
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~-----qa~~L~~rPHvVvatPGRlad~l~sn~~------ 145 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM-----QAAILSDRPHVVVATPGRLADHLSSNLG------ 145 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhh-----hhhhcccCCCeEecCccccccccccCCc------
Confidence 479999987 5567776665544444788888777643211 1222234578999999988765532100
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHHHH-Hhcc-CeEEEEeccCCCCChhhh
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMAL-RLYA-KHRWCITGTPIQRKLDDL 644 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~-~L~a-~~RwlLTGTPIqN~l~DL 644 (1207)
...-.+. .-..+|+|||.++-+.. ...-+.+. .++. +-.+++|+| |.+++.++
T Consensus 146 ----------~~~~~~~--rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSAT-itd~i~ql 201 (442)
T KOG0340|consen 146 ----------VCSWIFQ--RLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSAT-ITDTIKQL 201 (442)
T ss_pred ----------cchhhhh--ceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEee-hhhHHHHh
Confidence 0011122 23468999999987653 22222222 2444 367999999 33444443
No 152
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=55.43 E-value=9.5 Score=41.89 Aligned_cols=44 Identities=27% Similarity=0.199 Sum_probs=22.4
Q ss_pred cccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChh
Q 000967 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLD 642 (1207)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~ 642 (1207)
+....||+||||++.. ...-..+.++....+++++|=|.|.++.
T Consensus 118 ~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 118 FDNAFIIVDEAQNLTP--EELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-SEEEEE-SGGG--H--HHHHHHHTTB-TT-EEEEEE--------
T ss_pred ccceEEEEecccCCCH--HHHHHHHcccCCCcEEEEecCceeecCC
Confidence 3457899999998842 3344445567788999999999987654
No 153
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=55.08 E-value=36 Score=44.87 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=52.2
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
+.+-||+++--+ ..|...+.+|+ ++.|-+..+.... ......-.+||+-+|-..|.-|+-.+.-..
T Consensus 127 kgVhVVTvNdYLA~RDae~m~~vy~~L---GLtvg~i~~~~~~-------~err~aY~~DItYgTn~e~gFDYLRDnm~~ 196 (939)
T PRK12902 127 KGVHVVTVNDYLARRDAEWMGQVHRFL---GLSVGLIQQDMSP-------EERKKNYACDITYATNSELGFDYLRDNMAT 196 (939)
T ss_pred CCeEEEeCCHHHHHhHHHHHHHHHHHh---CCeEEEECCCCCh-------HHHHHhcCCCeEEecCCcccccchhhhhcc
Confidence 467788887654 47999999999 6888776543211 123334568888877666644432111000
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCcccc
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1207)
.........++++|+||+..|
T Consensus 197 ---------------~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 197 ---------------DISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred ---------------cccccccCccceEEEecccce
Confidence 011234456778888888765
No 154
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=54.64 E-value=44 Score=43.47 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=66.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+||++|. ++..|-.+.|+..+ +.++.++|..=..+... ........++..|||=|...+-.
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~-~~W~~~~~G~~~vVIGtRSAlF~------------ 309 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERY-RVWRRARRGEARVVIGTRSALFL------------ 309 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHH-HHHHHHhcCCceEEEEechhhcC------------
Confidence 579999997 68999999999988 47888888753221100 01122334567788877665543
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccc--cCChhHHHHH--HH----HHhccCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQM--VESNAAAATE--MA----LRLYAKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~--IKN~~Sk~~k--al----~~L~a~~RwlLTGTPI 637 (1207)
||. +-.+||+||=|- .|..+...+. -+ .....--.++-|+||-
T Consensus 310 ---------------Pf~--~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 310 ---------------PFK--NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred ---------------chh--hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC
Confidence 222 345899999995 5555432221 11 1233455788899995
No 155
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=52.65 E-value=5 Score=48.64 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=34.4
Q ss_pred hhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 415 ECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 415 ~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
.|+|+.......+ ..|+|+.|..|-|..|..---+..... .....|.|..|..
T Consensus 171 c~vC~~g~~~~~N--rmlqC~~C~~~fHq~Chqp~i~~~l~~------------------D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 171 CSVCYCGGPGAGN--RMLQCDKCRQWYHQACHQPLIKDELAG------------------DPFYEWFCDVCNR 223 (464)
T ss_pred eeeeecCCcCccc--eeeeecccccHHHHHhccCCCCHhhcc------------------CccceEeehhhcc
Confidence 4445544444444 679999999999999974333222222 1356789999975
No 156
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=51.77 E-value=30 Score=39.04 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=15.5
Q ss_pred cceeecCCCcchHHHHHHHH
Q 000967 359 GGILADEMGLGKTVELLACI 378 (1207)
Q Consensus 359 GGILADEMGLGKTvq~LALI 378 (1207)
.-||.=..|.|||..+-++.
T Consensus 44 ~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 34778889999999876654
No 157
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=46.77 E-value=8.8 Score=42.85 Aligned_cols=49 Identities=37% Similarity=0.864 Sum_probs=37.9
Q ss_pred hhhhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccch
Q 000967 410 KRERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCD 486 (1207)
Q Consensus 410 ~~~~v~cic~~~~~~~~~~g~~v~c~~--c~-~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~ 486 (1207)
.++.+.|.|...+- |..|.||. |. .|-|-.|||...- +.+..+|+.|.
T Consensus 218 e~e~lYCfCqqvSy-----GqMVaCDn~nCkrEWFH~~CVGLk~p------------------------PKG~WYC~eCk 268 (271)
T COG5034 218 EGEELYCFCQQVSY-----GQMVACDNANCKREWFHLECVGLKEP------------------------PKGKWYCPECK 268 (271)
T ss_pred cCceeEEEeccccc-----ccceecCCCCCchhheeccccccCCC------------------------CCCcEeCHHhH
Confidence 34678899998864 78999965 54 4999999997642 45778999996
Q ss_pred h
Q 000967 487 E 487 (1207)
Q Consensus 487 ~ 487 (1207)
.
T Consensus 269 ~ 269 (271)
T COG5034 269 K 269 (271)
T ss_pred h
Confidence 4
No 158
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.44 E-value=1.4e+02 Score=37.29 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=24.0
Q ss_pred ccceeeccCccccCChhHHHHHHH-HHh---ccCeEEEEeccCCCC
Q 000967 598 FWWRICLDEAQMVESNAAAATEMA-LRL---YAKHRWCITGTPIQR 639 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal-~~L---~a~~RwlLTGTPIqN 639 (1207)
.+..+|+||+|++-.. ...++ +.| +..-+++++.|-+..
T Consensus 116 ~~KVvIIDEah~Ls~~---A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 116 KFKVYIIDEVHMLSNS---AFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred CceEEEEeChHhCCHH---HHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 5789999999999532 22333 333 344567777664443
No 159
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=44.43 E-value=50 Score=43.50 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=50.1
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
+.+-||+++--+ ..|...+-+|+ ++.|-+..+..... .....-.+||+-+|-..+.-|+-.+.-..
T Consensus 118 ~~VhVvT~NdyLA~RD~e~m~pvy~~L---GLsvg~i~~~~~~~-------err~aY~~DItYgTn~e~gFDyLRDnm~~ 187 (870)
T CHL00122 118 KGVHIVTVNDYLAKRDQEWMGQIYRFL---GLTVGLIQEGMSSE-------ERKKNYLKDITYVTNSELGFDYLRDNMAL 187 (870)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHc---CCceeeeCCCCChH-------HHHHhcCCCCEecCCccccccchhhccCc
Confidence 567888887654 47999999999 68887765532210 22233446776666544443332111000
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCcccc
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1207)
.+.......++++|+||+..+
T Consensus 188 ---------------~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 188 ---------------SLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred ---------------ChHHhhccccceeeeecchhh
Confidence 011233456778999998865
No 160
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=43.34 E-value=15 Score=49.37 Aligned_cols=44 Identities=32% Similarity=0.375 Sum_probs=31.3
Q ss_pred hhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCCh
Q 000967 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1207)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1207)
.....+|||||++..|-.++.... ..| -.+..+|+||||++...
T Consensus 427 ~~a~~AdivItNHalLl~dl~~~~--------------------~il--p~~~~lViDEAH~l~d~ 470 (928)
T PRK08074 427 NRAKFADLVITNHALLLTDLTSEE--------------------PLL--PSYEHIIIDEAHHFEEA 470 (928)
T ss_pred HHHhcCCEEEECHHHHHHHHhhhc--------------------ccC--CCCCeEEEECCchHHHH
Confidence 345779999999999998763100 012 23689999999999643
No 161
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=43.07 E-value=1.3e+02 Score=39.88 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=30.0
Q ss_pred cccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCC
Q 000967 593 LLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1207)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIq 638 (1207)
.+....||++|+|||-.|--+. .+.-|.-..|++|-|-+.|
T Consensus 791 lf~~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 791 LFVNRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 4666789999999998875443 2334566778888887765
No 162
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=41.02 E-value=17 Score=47.96 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=30.3
Q ss_pred hhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCC
Q 000967 548 SELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES 612 (1207)
Q Consensus 548 ~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN 612 (1207)
.....+|||||++..|..++... ..+ -.++.||+||||.+..
T Consensus 409 ~~a~~AdivItNHall~~~~~~~---------------------~~~--p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 409 EKAKTARLLITNHAYFLTRVQDD---------------------KDF--ARNKVLVFDEAQKLML 450 (820)
T ss_pred HHHHhCCEEEEchHHHHHHHhhc---------------------cCC--CCCCEEEEECcchhHH
Confidence 33567899999999988865210 011 2478999999999973
No 163
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=40.22 E-value=59 Score=42.98 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=80.1
Q ss_pred ccCccccccchhhhhccCCCCCCCcEEEEeCC-chHHHHHHHHHhcCCCCC-CeEEEEcCCCccccccccchhhhhccCC
Q 000967 476 RDGEHICQWCDELIEATDSPVATGATLIVCPA-PILAQWDAEITRHTRPGS-LKTCIYEGARNSSLSDTSIMDISELVGA 553 (1207)
Q Consensus 476 ~~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~-SLl~QW~~Ei~k~~~~g~-L~V~vy~G~~~~~~~~~~~~~~~~l~~~ 553 (1207)
....|+|+.|.+..- .....+-++-|+|+ +++.|=..++..-+.... .+.....|.-...+. ...-.+
T Consensus 537 aGKTfisfY~iEKVL---ResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYs-------inp~nC 606 (1330)
T KOG0949|consen 537 AGKTFISFYAIEKVL---RESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYS-------INPWNC 606 (1330)
T ss_pred CCceeccHHHHHHHH---hhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhc-------CCchhc
Confidence 345677777765221 11234556777775 567776666654331111 111112221111100 012256
Q ss_pred cEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHHHHHhccCeEEEE
Q 000967 554 DIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCI 632 (1207)
Q Consensus 554 DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~a~~RwlL 632 (1207)
.|+||--+-+..-+-..+. .+ -.--+-.+||+||.|.|.|.. +.....+..|-.---++|
T Consensus 607 QVLITvPecleslLlspp~----------~q---------~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~L 667 (1330)
T KOG0949|consen 607 QVLITVPECLESLLLSPPH----------HQ---------KFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVL 667 (1330)
T ss_pred eEEEEchHHHHHHhcCchh----------hh---------hhhhcceEEEechhhhccccccchHHHHHHHhcCCCeeEE
Confidence 7999988888775431000 00 001134589999999999876 666666666666678899
Q ss_pred eccCCCCChhhhHhhhh
Q 000967 633 TGTPIQRKLDDLYGLLR 649 (1207)
Q Consensus 633 TGTPIqN~l~DL~sLL~ 649 (1207)
++| ++++..++..++
T Consensus 668 SAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 668 SAT--IGNPNLFQKWLN 682 (1330)
T ss_pred ecc--cCCHHHHHHHHH
Confidence 999 677777766555
No 164
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=40.04 E-value=33 Score=40.34 Aligned_cols=130 Identities=12% Similarity=0.178 Sum_probs=69.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCc-cccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARN-SSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~-~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
|-+|||||. ||+..=.-.++.. ++....++.... .....-.......-..+.++-+|.+.+.+...
T Consensus 135 g~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~-------- 202 (695)
T KOG0353|consen 135 GFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKK-------- 202 (695)
T ss_pred CceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHH--------
Confidence 779999997 5554333333332 122222222211 10000000111223456677778887765311
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh---HHHHHHHH----HhccCeEEEEeccCCCCChhhhHhhhh
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMAL----RLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~---Sk~~kal~----~L~a~~RwlLTGTPIqN~l~DL~sLL~ 649 (1207)
-..+.. ..+....|.+|.+||.|...... -.-++++. +++...-+.||+|-..+-++|.-.+|.
T Consensus 203 --~mnkle-------ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 203 --FMNKLE-------KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred --HHHHHH-------HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 001111 23555668899999999764322 12234443 346677899999999999888777654
No 165
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=40.02 E-value=47 Score=32.43 Aligned_cols=63 Identities=22% Similarity=0.420 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHHHHH----HHHHHHHHHHHhhhhcCCChhhhhhcccccccccCCCCCccccccccc
Q 000967 1063 SGLTYHIQSSLDQLEAS----RKTLLDRLLEIDQTMEKPKEEDMDRMRHCRICYGVGDGPICVHCELDE 1127 (1207)
Q Consensus 1063 ~gl~~~l~~~l~~l~~~----r~~~~~~l~~L~~~~~~p~~~~Ie~a~~C~~C~~~~~~~~C~~C~~~~ 1127 (1207)
...+-.+...|++|++. +.+++.++..+.+..... ... .....|..|-....+.+|.+|++.+
T Consensus 36 ~a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~~~~~~~~~-~~~-~~~~~C~~CG~pss~~iC~~C~l~~ 102 (104)
T TIGR00269 36 LSVRARIRDFLYDLENKKPGVKFSVLRGFEKLIPLLKEL-SEQ-EDLRRCERCGEPTSGRICKACKFLE 102 (104)
T ss_pred CCchHHHHHHHHHHHHHCcChHHHHHHHHHHHHHHhhcc-ccc-ccCCcCCcCcCcCCccccHhhhhhh
Confidence 45556677777777764 455666665555432211 011 1256799998888899999998753
No 166
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=39.91 E-value=39 Score=45.18 Aligned_cols=136 Identities=14% Similarity=0.207 Sum_probs=79.9
Q ss_pred CCCCcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchh--hhhccCCcEEEEehHHHhhhcccCCC
Q 000967 496 VATGATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD--ISELVGADIVLTTYDVLKEDLSHDSD 572 (1207)
Q Consensus 496 ~~~~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~--~~~l~~~DVVITTYetL~~d~~~~~~ 572 (1207)
...+-||||.|. ||+. +.+.+..+ ..++...+++....... ....+ ......+.|+-.|-|.+...-.-
T Consensus 302 l~~gitvVISPL~SLm~---DQv~~L~~-~~I~a~~L~s~q~~~~~-~~i~q~l~~~~~~ikilYvtPE~v~~~~~l--- 373 (941)
T KOG0351|consen 302 LLGGVTVVISPLISLMQ---DQVTHLSK-KGIPACFLSSIQTAAER-LAILQKLANGNPIIKILYVTPEKVVASEGL--- 373 (941)
T ss_pred ccCCceEEeccHHHHHH---HHHHhhhh-cCcceeeccccccHHHH-HHHHHHHhCCCCeEEEEEeCHHHhhcccch---
Confidence 345689999997 5653 22222221 24666666665432110 00001 11223678898999988764210
Q ss_pred CcccchhhhhhcccCCCccccccccc----cceeeccCccccCChh---HHHHHHHHH----hccCeEEEEeccCCCCCh
Q 000967 573 RHEGDRRFMRFQKRYPVIPTLLTRIF----WWRICLDEAQMVESNA---AAATEMALR----LYAKHRWCITGTPIQRKL 641 (1207)
Q Consensus 573 ~~~~~~~~~r~~kry~~~~s~L~~i~----w~rVILDEAH~IKN~~---Sk~~kal~~----L~a~~RwlLTGTPIqN~l 641 (1207)
. ..+.... -.++|+||||-+.... -.-++.+.. ....--++||+|=..+--
T Consensus 374 --------~----------~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~ 435 (941)
T KOG0351|consen 374 --------L----------ESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVR 435 (941)
T ss_pred --------h----------hHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHH
Confidence 0 0011111 3689999999986543 223333333 345568999999999989
Q ss_pred hhhHhhhhccCCCCCC
Q 000967 642 DDLYGLLRFLKSSPFS 657 (1207)
Q Consensus 642 ~DL~sLL~FL~p~~f~ 657 (1207)
+|+...|..-++..|.
T Consensus 436 ~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 436 EDVIRSLGLRNPELFK 451 (941)
T ss_pred HHHHHHhCCCCcceec
Confidence 9999999988887544
No 167
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=38.30 E-value=14 Score=46.63 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=39.1
Q ss_pred CCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeec
Q 000967 525 SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICL 604 (1207)
Q Consensus 525 ~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVIL 604 (1207)
.++.+.|+|.+. ....+++|+-.|..|-.+... . +.=..+.=..||+
T Consensus 308 ~~~~CPYY~SR~------------avp~aqlV~LPYQ~LL~~stR---------~------------slgI~LkdsIvIi 354 (821)
T KOG1133|consen 308 ELRGCPYYASRR------------AVPQAQLVTLPYQLLLHESTR---------K------------SLGISLKDSIVII 354 (821)
T ss_pred hcCCCCchhhhh------------ccccccEEeccHHHHHhHHHH---------H------------hcCccccccEEEE
Confidence 678888998654 346689999999999875321 0 1112334568999
Q ss_pred cCccccCCh
Q 000967 605 DEAQMVESN 613 (1207)
Q Consensus 605 DEAH~IKN~ 613 (1207)
||||++-+.
T Consensus 355 DEAHNlidt 363 (821)
T KOG1133|consen 355 DEAHNLIDT 363 (821)
T ss_pred echhHHHHH
Confidence 999998654
No 168
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=38.07 E-value=61 Score=41.72 Aligned_cols=41 Identities=20% Similarity=0.439 Sum_probs=30.3
Q ss_pred cCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCCh
Q 000967 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN 613 (1207)
Q Consensus 551 ~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~ 613 (1207)
.++..+|+|-+.|++-+...+ ..+..+.| ||+||.|.++..
T Consensus 210 P~ASCLVMTTEILRsMLYRGS--------------------EvmrEVaW--VIFDEIHYMRDk 250 (1041)
T KOG0948|consen 210 PDASCLVMTTEILRSMLYRGS--------------------EVMREVAW--VIFDEIHYMRDK 250 (1041)
T ss_pred CCCceeeeHHHHHHHHHhccc--------------------hHhheeee--EEeeeehhcccc
Confidence 557789999999998764311 23556666 999999999864
No 169
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=36.95 E-value=89 Score=41.47 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=15.3
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 000967 361 ILADEMGLGKTVELLACIFA 380 (1207)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1207)
||.-..|.|||..+..|...
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARS 60 (824)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 56667899999988776643
No 170
>PF13173 AAA_14: AAA domain
Probab=35.87 E-value=34 Score=34.14 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=25.1
Q ss_pred ccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCC
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIq 638 (1207)
.-.+|++||+|.+.+.... .+.+..-....++++||.-..
T Consensus 61 ~~~~i~iDEiq~~~~~~~~-lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDA-LKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccHHHH-HHHHHHhccCceEEEEccchH
Confidence 3457999999999754322 222222223569999998543
No 171
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=34.36 E-value=1.8e+02 Score=33.61 Aligned_cols=124 Identities=17% Similarity=0.153 Sum_probs=73.5
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhc-cCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
-.||+.|+- |-.|-.+-+.....+-++.++..-|.+..+. +...+ ....+|.-|.+.+-.-+..
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge------dikkld~G~hvVsGtPGrv~dmikr-------- 162 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE------DIKKLDYGQHVVSGTPGRVLDMIKR-------- 162 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccch------hhhhhcccceEeeCCCchHHHHHHh--------
Confidence 589999987 4557666666554433566666666554321 11111 1223555454444332211
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHhc-cCeEEEEeccCCCCChhhhHhhhhccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPIqN~l~DL~sLL~FL~p~ 654 (1207)
..|.-..-.++|||||..+-|. ..+.+...+.|+ .-..+++|+|- +.|+.-+..+..++
T Consensus 163 --------------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtd 224 (400)
T KOG0328|consen 163 --------------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTD 224 (400)
T ss_pred --------------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCC
Confidence 1255556678999999987654 478888888887 67788899994 34444455544444
Q ss_pred C
Q 000967 655 P 655 (1207)
Q Consensus 655 ~ 655 (1207)
|
T Consensus 225 p 225 (400)
T KOG0328|consen 225 P 225 (400)
T ss_pred c
Confidence 3
No 172
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=34.02 E-value=1.2e+02 Score=40.84 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCc
Q 000967 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1207)
Q Consensus 511 ~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~ 590 (1207)
..|+.-+-+|. +|.|-+....... ......-.+||+-.|-..|.-|+-.++-. ..
T Consensus 196 aewm~p~y~fl---GLtVg~i~~~~~~-------~~Rr~aY~~DItYgTn~EfGFDYLRDnma---------------~~ 250 (1025)
T PRK12900 196 KEWMNPVFEFH---GLSVGVILNTMRP-------EERREQYLCDITYGTNNEFGFDYLRDNMA---------------GT 250 (1025)
T ss_pred HHHHHHHHHHh---CCeeeeeCCCCCH-------HHHHHhCCCcceecCCCccccccchhccc---------------cc
Confidence 37999999998 6888665332111 12233445677766655444443221100 01
Q ss_pred cccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhH
Q 000967 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLY 645 (1207)
Q Consensus 591 ~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~ 645 (1207)
+..+....+++.|+||+..|-=. .|+.-+++|| |+.+...++|
T Consensus 251 ~~~~vqR~~~faIVDEvDSvLID-----------eARTPLIISg-p~~~~~~~~y 293 (1025)
T PRK12900 251 PEEMVQRDFYFAIVDEVDSVLID-----------EARTPLIISG-PVPNADNSKF 293 (1025)
T ss_pred hhhhhccCCceEEEechhhhhhc-----------cccCceEEeC-CCCCcchHHH
Confidence 23356678899999999865311 3556788998 4444434433
No 173
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=32.53 E-value=74 Score=41.44 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=45.2
Q ss_pred cCccccccchhhhhccCCCCCCCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccc-cccchhhhhccCCcE
Q 000967 477 DGEHICQWCDELIEATDSPVATGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLS-DTSIMDISELVGADI 555 (1207)
Q Consensus 477 ~~~~~C~~C~~~~~~~~~~~~~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~-~~~~~~~~~l~~~DV 555 (1207)
.-+..||.|- +.+|+.+=..+ ..=++|+.+++| ..+++.+++....+.. .........-.++||
T Consensus 473 ~~p~~Cp~Cg------------s~~L~~~G~Gt-erieeeL~~~FP--~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dI 537 (730)
T COG1198 473 PIPQSCPECG------------SEHLRAVGPGT-ERIEEELKRLFP--GARIIRIDSDTTRRKGALEDLLDQFANGEADI 537 (730)
T ss_pred CCCCCCCCCC------------CCeeEEecccH-HHHHHHHHHHCC--CCcEEEEccccccchhhHHHHHHHHhCCCCCe
Confidence 3456677774 23455554443 455788999998 8999999987654321 111123334467899
Q ss_pred EEEehHHHhh
Q 000967 556 VLTTYDVLKE 565 (1207)
Q Consensus 556 VITTYetL~~ 565 (1207)
+|-|--..+.
T Consensus 538 LiGTQmiaKG 547 (730)
T COG1198 538 LIGTQMIAKG 547 (730)
T ss_pred eecchhhhcC
Confidence 9877554443
No 174
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.89 E-value=59 Score=39.25 Aligned_cols=105 Identities=21% Similarity=0.165 Sum_probs=67.4
Q ss_pred CcEEEEeCCc-hHHH---HHHHHHhcCCCCCCeEE-EEcCCCccccccccchhhhhc-cCCcEEEEehHHHhhhcccCCC
Q 000967 499 GATLIVCPAP-ILAQ---WDAEITRHTRPGSLKTC-IYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHDSD 572 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~Q---W~~Ei~k~~~~g~L~V~-vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~~~ 572 (1207)
-+.||+.|+. |..| -..++.+++ .++.. .|+|.+... +...+ .+.||||.|-..+.--...
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt---~lr~s~~~ggD~~ee-------qf~~l~~npDii~ATpgr~~h~~ve--- 157 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGT---KLRQSLLVGGDSIEE-------QFILLNENPDIIIATPGRLLHLGVE--- 157 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhcccc---chhhhhhcccchHHH-------HHHHhccCCCEEEecCceeeeeehh---
Confidence 3789999987 4444 455666666 56665 666654431 33333 3689999888765432110
Q ss_pred CcccchhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHhcc-CeEEEEecc
Q 000967 573 RHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYA-KHRWCITGT 635 (1207)
Q Consensus 573 ~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~a-~~RwlLTGT 635 (1207)
-.|.--.-.+||+|||.+|-.. .-+..+.+.+|+. .-.+++|||
T Consensus 158 -------------------m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSat 204 (529)
T KOG0337|consen 158 -------------------MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSAT 204 (529)
T ss_pred -------------------eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEecc
Confidence 0133334568999999997543 3677778888864 457889999
No 175
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=31.17 E-value=47 Score=29.71 Aligned_cols=24 Identities=8% Similarity=-0.158 Sum_probs=18.6
Q ss_pred eEEecCCCCCccchhhhh-hhhccC
Q 000967 872 HLHHNLTEILPMVANCAT-ELSQNE 895 (1207)
Q Consensus 872 h~~~Nl~dwnpa~d~QA~-R~~riG 895 (1207)
|+.+--..|++....|+. ||+|+|
T Consensus 54 ~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 54 HVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp EEEESSSESSHHHHHHHHTTSSTTT
T ss_pred cccccccCCCHHHHHHHhhcCCCCC
Confidence 333333369999999999 999988
No 176
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=31.15 E-value=1.6e+02 Score=37.31 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=38.2
Q ss_pred ccccccccceeeccCccccC----ChhHHHHHHHHH---hccCeEEEEeccCCCCChhhhHhh
Q 000967 592 TLLTRIFWWRICLDEAQMVE----SNAAAATEMALR---LYAKHRWCITGTPIQRKLDDLYGL 647 (1207)
Q Consensus 592 s~L~~i~w~rVILDEAH~IK----N~~Sk~~kal~~---L~a~~RwlLTGTPIqN~l~DL~sL 647 (1207)
+.|....-.+|++||....- +.......+-.+ .....++++..||....-..++.+
T Consensus 128 ~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 128 SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 45778888999999999873 222334444443 346689999999998765555544
No 177
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=31.15 E-value=5.1e+02 Score=27.07 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=23.3
Q ss_pred cccceeeccCccccCChhHHHHHHHHH-h---ccCeEEEEeccC
Q 000967 597 IFWWRICLDEAQMVESNAAAATEMALR-L---YAKHRWCITGTP 636 (1207)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~-L---~a~~RwlLTGTP 636 (1207)
-.|..+|+||||.+- ..+..++.+ | +..-+++|+.+=
T Consensus 101 ~~~KviiI~~ad~l~---~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT---EEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS----HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhh---HHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 347789999999984 333334433 3 466778877663
No 178
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=30.25 E-value=1.5e+02 Score=39.94 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCc
Q 000967 511 AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVI 590 (1207)
Q Consensus 511 ~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~ 590 (1207)
..|+..+-+|. +|.|-+....... .......-.+||+-+|-..|.-|+-.++-. ..
T Consensus 227 aewmgply~fL---GLsvg~i~~~~~~------~~~rr~aY~~DItYgTn~EfGFDYLRDnm~---------------~~ 282 (1112)
T PRK12901 227 SEWMGPLYEFH---GLSVDCIDKHQPN------SEARRKAYNADITYGTNNEFGFDYLRDNMA---------------HS 282 (1112)
T ss_pred HHHHHHHHHHh---CCceeecCCCCCC------HHHHHHhCCCcceecCCCccccccchhccc---------------cc
Confidence 37999999999 6888765432100 012233345677766655444443221100 01
Q ss_pred cccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhh
Q 000967 591 PTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1207)
Q Consensus 591 ~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sL 647 (1207)
+..+....+.+.|+||+..|-=. .|+--+++||. ..+.-.++|..
T Consensus 283 ~~~~vqR~~~fAIVDEvDSILID-----------EARTPLIISGp-~~~~~~~~y~~ 327 (1112)
T PRK12901 283 PEDLVQRKHNYAIVDEVDSVLID-----------DARTPLIISGP-VPKGDDQEFEE 327 (1112)
T ss_pred hHhhhCcCCceeEeechhhhhhc-----------cccCcEEEeCC-CCCccHHHHHH
Confidence 12355667889999999865211 35556889984 44444444433
No 179
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.72 E-value=1.5e+02 Score=37.90 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=15.7
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 000967 361 ILADEMGLGKTVELLACIFA 380 (1207)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1207)
||.-.-|.|||-.+.++.-.
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKA 61 (576)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 56667899999998887644
No 180
>PHA00673 acetyltransferase domain containing protein
Probab=29.41 E-value=75 Score=33.46 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=36.3
Q ss_pred cceeeccCccccCChhHHHHHHHHHh---ccCeEEEEeccCCCCChh
Q 000967 599 WWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLD 642 (1207)
Q Consensus 599 w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPIqN~l~ 642 (1207)
-+-|++|+.|+=+.-.++..+.+... ..-++|-+|+||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 45689999999988888887777653 467899999999999875
No 181
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.86 E-value=40 Score=34.87 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=37.8
Q ss_pred cCCCCCcccccCccccceeccCCCcccCCCCCCCCCcccceeecCCCcchHHHHHHHHHHhc
Q 000967 321 FSPLCMPMDFLDTYSTLFYNPFSGSLSLSPDYTSSYVFGGILADEMGLGKTVELLACIFAHR 382 (1207)
Q Consensus 321 ~~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~~~~~vrGGILADEMGLGKTvq~LALIl~~~ 382 (1207)
+.|.|..-..-..+..+|||.+|+.--++++.......|++ .||-=.-|.|+-|+..|.
T Consensus 7 LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~~~~~~---~~~~p~~Vr~sHlLVKH~ 65 (163)
T KOG3259|consen 7 LPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSKSGGKI---GQGEPARVRCSHLLVKHK 65 (163)
T ss_pred CCchhheeccccCCCcceeccccchhhccCCCccccccccc---cCCCccceeEEEEEEccc
Confidence 34678877767778899999999988777776554333333 333334455555555443
No 182
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=28.54 E-value=1.1e+02 Score=40.83 Aligned_cols=57 Identities=30% Similarity=0.521 Sum_probs=33.6
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeE-EEEcCCCccccccccchhhhhc-cCCcEEEEehHHH
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKT-CIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVL 563 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V-~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL 563 (1207)
-.||+||+- +..|=.+++.+|.-.-++++ .+|.|..... ....+ ...+|+|.|-+..
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~-------qiaelkRg~eIvV~tpGRm 499 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ-------QIAELKRGAEIVVCTPGRM 499 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH-------HHHHHhcCCceEEeccchh
Confidence 368999985 66676666666654435554 5666665432 22222 2267888775543
No 183
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=27.67 E-value=77 Score=36.49 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=15.5
Q ss_pred cceeecCCCcchHHHHHHHH
Q 000967 359 GGILADEMGLGKTVELLACI 378 (1207)
Q Consensus 359 GGILADEMGLGKTvq~LALI 378 (1207)
+-+|--+.|.|||..+-++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia 79 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMA 79 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 44677799999999876654
No 184
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=27.02 E-value=2.2e+02 Score=36.21 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.2
Q ss_pred eeecCCCcchHHHHHHHHHH
Q 000967 361 ILADEMGLGKTVELLACIFA 380 (1207)
Q Consensus 361 ILADEMGLGKTvq~LALIl~ 380 (1207)
|+.=+.|.|||..+.++...
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 66678999999998887654
No 185
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=26.20 E-value=31 Score=40.66 Aligned_cols=40 Identities=30% Similarity=0.233 Sum_probs=29.5
Q ss_pred cceeeccCccccCChhHHHHHH-HHHhccCeEEEEeccCCCCCh
Q 000967 599 WWRICLDEAQMVESNAAAATEM-ALRLYAKHRWCITGTPIQRKL 641 (1207)
Q Consensus 599 w~rVILDEAH~IKN~~Sk~~ka-l~~L~a~~RwlLTGTPIqN~l 641 (1207)
=..||+||||+ .+..+.+| +.+|-...+..+||.+.|=.|
T Consensus 244 dAfVIlDEaQN---tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 244 DAFVILDEAQN---TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CeEEEEecccc---cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 35799999997 34444444 456788899999999988554
No 186
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=26.06 E-value=1.1e+02 Score=37.07 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=17.5
Q ss_pred cceeecCCCcchHHHHHHHHHH
Q 000967 359 GGILADEMGLGKTVELLACIFA 380 (1207)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~ 380 (1207)
+=|+.-..|.|||..+.++...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4467788999999998887654
No 187
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=25.54 E-value=1.7e+02 Score=38.82 Aligned_cols=100 Identities=7% Similarity=-0.043 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH----HHHH-HHhh--------------
Q 000967 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMA----VVEE-HSED-------------- 862 (1207)
Q Consensus 802 t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~l~----~~~e-~~~~-------------- 862 (1207)
|.++-...++..+. ++.+.++-+||.+.....-..|.+.|.+....+ .+|. ..++ .+.+
T Consensus 407 t~~~K~~Aii~ei~-~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h-~vLNAk~~e~EA~IIa~AG~~GaVTIATNMA 484 (925)
T PRK12903 407 TKHAKWKAVVKEVK-RVHKKGQPILIGTAQVEDSETLHELLLEANIPH-TVLNAKQNAREAEIIAKAGQKGAITIATNMA 484 (925)
T ss_pred cHHHHHHHHHHHHH-HHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCc-eeecccchhhHHHHHHhCCCCCeEEEecccc
Confidence 55565666665554 344567899998888888888887776653322 1222 1111 1111
Q ss_pred -----ccCCC----CcceeEEecCCCCCccchhhhh-hhhccCCCCceEEE
Q 000967 863 -----FRLDP----LLNIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSE 903 (1207)
Q Consensus 863 -----fr~D~----~~~lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~vy 903 (1207)
+.+++ .--||++-.-..=+.-.|+|.. ||-|.|.+=....|
T Consensus 485 GRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 485 GRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 11111 1123554433334556899999 99999986444444
No 188
>PLN03025 replication factor C subunit; Provisional
Probab=25.39 E-value=82 Score=36.72 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=33.9
Q ss_pred ccceeeccCccccCChhHH-HHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCC
Q 000967 598 FWWRICLDEAQMVESNAAA-ATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSP 655 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk-~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~ 655 (1207)
.|..||+||+|.+-..... ..+.+.......+++++.++...-+..|-+-...+...+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~ 157 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence 5789999999998432211 111222224556889988877665555655444444333
No 189
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=24.82 E-value=4.2e+02 Score=35.38 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=40.7
Q ss_pred cCCcEEEEehHHHhhhcccCCCCcccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhc----c
Q 000967 551 VGADIVLTTYDVLKEDLSHDSDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY----A 626 (1207)
Q Consensus 551 ~~~DVVITTYetL~~d~~~~~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~----a 626 (1207)
....|++.|-..+..|+-. ..+.--....||+||||++-... .-+-.++..+ .
T Consensus 6 ~~ggi~~~T~rIl~~DlL~----------------------~ri~~~~itgiiv~~Ahr~~~~~-~eaFI~rlyr~~n~~ 62 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT----------------------GIIPPELITGILVLRADRIIESS-QEAFILRLYRQKNKT 62 (814)
T ss_pred hcCCEEEEechhhHhHHhc----------------------CCCCHHHccEEEEeecccccccc-cHHHHHHHHHHhCCC
Confidence 3456888898998888631 11222345679999999996433 3333334433 3
Q ss_pred CeEEEEeccCCC
Q 000967 627 KHRWCITGTPIQ 638 (1207)
Q Consensus 627 ~~RwlLTGTPIq 638 (1207)
.+..++|..|-.
T Consensus 63 gfIkafSdsP~~ 74 (814)
T TIGR00596 63 GFIKAFSDNPEA 74 (814)
T ss_pred cceEEecCCCcc
Confidence 456778888864
No 190
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.60 E-value=4.7e+02 Score=33.72 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=30.7
Q ss_pred ccceeeccCccccCChhHHHHHHHHHh---ccCeEEEEeccCCCCChhhhHhhhhccCCCCCCC
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~~ 658 (1207)
.+..||+||+|++-. ......++.| .....++++.|-...-+.-|-+-...+...++..
T Consensus 121 ~~KVvIIdea~~Ls~--~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~ 182 (614)
T PRK14971 121 KYKIYIIDEVHMLSQ--AAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQV 182 (614)
T ss_pred CcEEEEEECcccCCH--HHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCH
Confidence 577899999999942 1222222233 3445677766633332333443333444444443
No 191
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=24.54 E-value=1.3e+02 Score=39.05 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.6
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCC
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRP 523 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~ 523 (1207)
+|+|||+|.- +..||.+|++.|+|.
T Consensus 55 ~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 55 RPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 5899999986 567999999999973
No 192
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=22.71 E-value=64 Score=38.53 Aligned_cols=39 Identities=26% Similarity=0.202 Sum_probs=29.0
Q ss_pred cceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCC
Q 000967 599 WWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 599 w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN 639 (1207)
=..||+||||++-- ...-..+.+.-...+++|||-|-|-
T Consensus 352 ~~FiIIDEaQNLTp--heikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 352 DSFIIIDEAQNLTP--HELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred cceEEEehhhccCH--HHHHHHHHhccCCCEEEEcCCHHHc
Confidence 35699999999853 2334455566778899999999874
No 193
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=22.48 E-value=1.6e+02 Score=33.03 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=18.2
Q ss_pred cEEEEeCCchHHHHHHHHHhcCC
Q 000967 500 ATLIVCPAPILAQWDAEITRHTR 522 (1207)
Q Consensus 500 ~tLIV~P~SLl~QW~~Ei~k~~~ 522 (1207)
=+-+|||++++.|=.+-+...+.
T Consensus 72 LvrviVpk~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 72 LVRVIVPKALLEQMRQMLRSRLG 94 (229)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHH
Confidence 36789999999998888776653
No 194
>CHL00181 cbbX CbbX; Provisional
Probab=22.22 E-value=1.2e+02 Score=35.01 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=15.3
Q ss_pred eeecCCCcchHHHHHHHHH
Q 000967 361 ILADEMGLGKTVELLACIF 379 (1207)
Q Consensus 361 ILADEMGLGKTvq~LALIl 379 (1207)
+|-=..|.|||..+-++..
T Consensus 63 ll~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6677899999998877653
No 195
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.18 E-value=91 Score=40.83 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=36.4
Q ss_pred cccceeeccCccccCChhHHHHHHHHHh---ccCeEEEEeccCCCCChhhhHhhhhccCCCCCC
Q 000967 597 IFWWRICLDEAQMVESNAAAATEMALRL---YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFS 657 (1207)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L---~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~ 657 (1207)
-.|.++||||+|++-+.. ....++.| ....+++|+.|=.+.=+.-|.+-...+...++.
T Consensus 118 gr~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls 179 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMP 179 (830)
T ss_pred CCceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcC
Confidence 368899999999995432 22233334 456788998886665555555544444444443
No 196
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=21.64 E-value=31 Score=29.23 Aligned_cols=15 Identities=47% Similarity=1.247 Sum_probs=9.9
Q ss_pred ccccccccccccccc
Q 000967 430 LWVQCDICDAWQHAD 444 (1207)
Q Consensus 430 ~~v~c~~c~~wqh~~ 444 (1207)
.||||+.|..|....
T Consensus 2 ~WVQCd~C~KWR~lp 16 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP 16 (50)
T ss_dssp EEEE-TTT--EEEE-
T ss_pred eEEECCCCCceeeCC
Confidence 499999999999884
No 197
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=21.57 E-value=48 Score=40.24 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=28.3
Q ss_pred ccCeEEEEeccCCCCChhhhHhhhhccCCCCC
Q 000967 625 YAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1207)
Q Consensus 625 ~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f 656 (1207)
++++-.+.||||+-|.+.|+|++-++|.++.+
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 45777899999999999999999999998753
No 198
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.21 E-value=1.9e+02 Score=36.32 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEcCCCcccccc-ccchhhhhccCCcEEEEehHHHhh
Q 000967 509 ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSD-TSIMDISELVGADIVLTTYDVLKE 565 (1207)
Q Consensus 509 Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~-~~~~~~~~l~~~DVVITTYetL~~ 565 (1207)
=.....+|+.+.+| ..++..+++....+... ......-.-.++||+|.|-- +.+
T Consensus 270 Gte~~~e~l~~~fp--~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-i~k 324 (505)
T TIGR00595 270 GTEQVEEELAKLFP--GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM-IAK 324 (505)
T ss_pred cHHHHHHHHHhhCC--CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc-ccc
Confidence 35677889999997 78999999875433210 11112222356789887653 444
No 199
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=20.39 E-value=87 Score=39.95 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=31.8
Q ss_pred cccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCC
Q 000967 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1207)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIq 638 (1207)
..+++||+|||-|+-. ....+.+..++...|++|.|=|-|
T Consensus 258 l~~dvlIiDEaSMvd~--~l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 258 LPLDVLVVDEASMVDL--PLMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred CcccEEEEcccccCCH--HHHHHHHHhcCCCCEEEEECChhh
Confidence 3689999999999964 345556667888889999998766
No 200
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=20.26 E-value=90 Score=33.15 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=20.1
Q ss_pred cccccch--HHHHHHHHHH---HHHHHHHHHHH
Q 000967 1060 RSISGLT--YHIQSSLDQL---EASRKTLLDRL 1087 (1207)
Q Consensus 1060 ~~~~gl~--~~l~~~l~~l---~~~r~~~~~~l 1087 (1207)
....||+ |+|+..+.+| ++-|+.++.+-
T Consensus 103 eE~kGlKKFflLS~R~r~LiiKHKVrNe~v~~W 135 (200)
T PF12387_consen 103 EESKGLKKFFLLSGRVRNLIIKHKVRNETVASW 135 (200)
T ss_pred hhhcCcceeeeehhHHHHHHHHhHhhhHHHHHH
Confidence 3456776 8888888888 56677777665
No 201
>PF13871 Helicase_C_4: Helicase_C-like
Probab=20.03 E-value=85 Score=36.23 Aligned_cols=54 Identities=9% Similarity=-0.095 Sum_probs=40.4
Q ss_pred CCcceeEEecCCCCCccchhhhh-hhhccCCCCceEEEEcccCCcc-cccchhHhhhh
Q 000967 867 PLLNIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSI-ETCDENARKCQ 922 (1207)
Q Consensus 867 ~~~~lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~ti-ee~~~~~~k~~ 922 (1207)
.-+++|+++-+. |..-...|-. |+||-||..+. .|++++.+.. |.+......|+
T Consensus 86 qr~Rv~i~le~p-wsad~aiQ~~GR~hRsnQ~~~P-~y~~l~t~~~gE~Rfas~va~r 141 (278)
T PF13871_consen 86 QRRRVHITLELP-WSADKAIQQFGRTHRSNQVSAP-EYRFLVTDLPGERRFASTVARR 141 (278)
T ss_pred CCceEEEEeeCC-CCHHHHHHHhccccccccccCC-EEEEeecCCHHHHHHHHHHHHH
Confidence 357889999887 9999999998 99999998774 6776666665 44555444443
Done!