Query 000967
Match_columns 1207
No_of_seqs 489 out of 3028
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 9.6E-60 3.3E-64 585.9 14.3 369 498-925 114-544 (644)
2 3mwy_W Chromo domain-containin 100.0 1.9E-58 6.4E-63 587.5 22.3 367 498-927 286-702 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 3.1E-55 1.1E-59 528.3 26.2 355 499-923 87-467 (500)
4 3dmq_A RNA polymerase-associat 100.0 1.6E-35 5.6E-40 382.9 13.0 346 499-922 201-628 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 2.5E-27 8.6E-32 278.9 23.0 360 499-922 53-488 (494)
6 2fwr_A DNA repair protein RAD2 99.9 5.6E-25 1.9E-29 262.9 15.5 308 499-921 134-466 (472)
7 1z5z_A Helicase of the SNF2/RA 99.9 6.5E-23 2.2E-27 229.1 9.3 203 689-926 13-241 (271)
8 4a2w_A RIG-I, retinoic acid in 99.8 1.2E-19 4.2E-24 234.4 23.7 122 498-646 296-427 (936)
9 3tbk_A RIG-I helicase domain; 99.8 7.1E-19 2.4E-23 212.3 26.4 119 499-644 53-182 (555)
10 4a2p_A RIG-I, retinoic acid in 99.8 1.1E-18 3.9E-23 211.1 26.0 118 499-643 56-183 (556)
11 4a2q_A RIG-I, retinoic acid in 99.8 4.3E-19 1.5E-23 226.0 22.7 122 498-646 296-427 (797)
12 2oca_A DAR protein, ATP-depend 99.8 1.2E-18 4.1E-23 210.1 19.5 119 499-653 158-278 (510)
13 3hgt_A HDA1 complex subunit 3; 99.8 1.6E-19 5.5E-24 204.0 5.1 195 702-921 19-249 (328)
14 2ykg_A Probable ATP-dependent 99.8 1.6E-17 5.3E-22 207.8 23.3 129 499-654 62-208 (696)
15 3h1t_A Type I site-specific re 99.7 1.4E-16 4.8E-21 195.9 19.4 116 498-648 235-353 (590)
16 1rif_A DAR protein, DNA helica 99.7 6.7E-17 2.3E-21 180.5 12.4 119 499-653 158-278 (282)
17 4gl2_A Interferon-induced heli 99.6 6.5E-15 2.2E-19 184.2 23.6 133 499-653 57-215 (699)
18 2fz4_A DNA repair protein RAD2 99.5 2.9E-14 9.9E-19 155.9 14.8 97 499-640 134-232 (237)
19 2z0m_A 337AA long hypothetical 99.5 3E-14 1E-18 160.8 14.3 111 499-637 57-171 (337)
20 1xti_A Probable ATP-dependent 99.5 3.2E-13 1.1E-17 155.9 21.7 114 499-638 77-196 (391)
21 1s2m_A Putative ATP-dependent 99.4 2.5E-12 8.5E-17 149.3 20.8 112 499-637 90-205 (400)
22 3pey_A ATP-dependent RNA helic 99.4 2.6E-11 8.9E-16 139.6 22.8 108 499-637 76-188 (395)
23 1hv8_A Putative ATP-dependent 99.4 2.2E-12 7.5E-17 147.0 12.7 113 499-639 75-191 (367)
24 2gxq_A Heat resistant RNA depe 99.3 9.2E-12 3.2E-16 131.4 15.1 117 499-645 73-193 (207)
25 3b6e_A Interferon-induced heli 99.3 5.7E-12 2E-16 133.4 12.5 115 499-635 83-216 (216)
26 1t6n_A Probable ATP-dependent 99.3 1.2E-11 4E-16 132.4 14.9 117 499-644 83-207 (220)
27 3eiq_A Eukaryotic initiation f 99.3 2.3E-11 7.9E-16 141.4 18.5 113 499-637 109-225 (414)
28 1fuu_A Yeast initiation factor 99.3 8E-12 2.8E-16 144.1 14.3 111 499-637 90-204 (394)
29 2oxc_A Probable ATP-dependent 99.3 4.2E-11 1.4E-15 129.4 16.4 111 499-637 93-209 (230)
30 1qde_A EIF4A, translation init 99.3 4.8E-11 1.6E-15 127.8 16.3 111 499-637 83-197 (224)
31 2pl3_A Probable ATP-dependent 99.3 2E-11 6.7E-16 132.2 12.6 117 499-643 98-218 (236)
32 1vec_A ATP-dependent RNA helic 99.2 8.6E-11 3E-15 124.0 15.7 112 499-637 72-188 (206)
33 1q0u_A Bstdead; DEAD protein, 99.2 6.9E-11 2.4E-15 126.5 14.4 118 499-644 73-198 (219)
34 2j0s_A ATP-dependent RNA helic 99.2 8.6E-11 2.9E-15 136.9 14.6 113 499-638 106-222 (410)
35 1wrb_A DJVLGB; RNA helicase, D 99.1 1.9E-10 6.5E-15 125.9 13.2 118 499-644 101-226 (253)
36 3bor_A Human initiation factor 99.1 5.7E-10 1.9E-14 121.2 15.2 113 499-637 99-215 (237)
37 3ber_A Probable ATP-dependent 99.1 1.6E-10 5.5E-15 126.8 11.0 113 499-637 112-228 (249)
38 2w00_A HSDR, R.ECOR124I; ATP-b 99.1 2.6E-10 8.8E-15 147.9 13.5 107 499-639 331-441 (1038)
39 2eyq_A TRCF, transcription-rep 99.0 9.2E-10 3.1E-14 145.0 14.1 114 499-643 653-768 (1151)
40 3dkp_A Probable ATP-dependent 99.0 4.9E-09 1.7E-13 113.9 14.8 114 499-636 99-220 (245)
41 3fht_A ATP-dependent RNA helic 99.0 7.8E-09 2.7E-13 119.8 17.3 110 499-637 96-211 (412)
42 3iuy_A Probable ATP-dependent 98.9 6.3E-09 2.1E-13 111.8 14.7 111 499-637 95-209 (228)
43 3oiy_A Reverse gyrase helicase 98.9 3.7E-09 1.3E-13 123.8 12.9 116 499-642 65-209 (414)
44 2db3_A ATP-dependent RNA helic 98.9 5.6E-09 1.9E-13 123.7 13.2 112 499-637 130-247 (434)
45 3fho_A ATP-dependent RNA helic 98.9 4.8E-09 1.6E-13 126.9 11.6 108 499-637 190-302 (508)
46 1gm5_A RECG; helicase, replica 98.8 2.3E-09 7.8E-14 135.6 7.6 113 499-642 418-532 (780)
47 2i4i_A ATP-dependent RNA helic 98.8 1.5E-08 5.2E-13 117.9 12.8 112 499-637 102-221 (417)
48 2xgj_A ATP-dependent RNA helic 98.8 1.6E-08 5.5E-13 131.5 14.2 100 499-636 130-233 (1010)
49 3fe2_A Probable ATP-dependent 98.8 2E-08 6.8E-13 109.2 11.0 111 499-636 103-217 (242)
50 3ly5_A ATP-dependent RNA helic 98.7 3.4E-08 1.2E-12 109.1 12.3 113 499-637 127-243 (262)
51 1oyw_A RECQ helicase, ATP-depe 98.7 1.8E-08 6.3E-13 122.4 11.0 125 499-650 66-198 (523)
52 3fmp_B ATP-dependent RNA helic 98.7 1.5E-07 5.2E-12 112.3 16.2 110 499-637 163-278 (479)
53 2p6r_A Afuhel308 helicase; pro 98.7 9.8E-08 3.4E-12 119.8 15.0 116 499-647 69-191 (702)
54 2zj8_A DNA helicase, putative 98.6 1.7E-07 5.9E-12 117.9 13.5 117 499-648 69-189 (720)
55 3l9o_A ATP-dependent RNA helic 98.6 2.9E-07 9.9E-12 120.8 15.3 110 499-648 228-341 (1108)
56 2va8_A SSO2462, SKI2-type heli 98.6 3.2E-07 1.1E-11 115.3 14.9 117 499-648 76-195 (715)
57 3sqw_A ATP-dependent RNA helic 98.6 1.6E-07 5.4E-12 115.3 11.8 113 499-638 96-225 (579)
58 2v1x_A ATP-dependent DNA helic 98.5 1.6E-07 5.5E-12 115.7 10.5 130 499-649 85-223 (591)
59 3i5x_A ATP-dependent RNA helic 98.5 2.5E-07 8.7E-12 112.6 12.0 115 499-638 147-276 (563)
60 4a4z_A Antiviral helicase SKI2 98.5 4.1E-07 1.4E-11 118.3 14.2 103 499-637 83-189 (997)
61 3fmo_B ATP-dependent RNA helic 98.4 3.7E-06 1.3E-10 94.8 15.9 110 500-638 164-279 (300)
62 4ddu_A Reverse gyrase; topoiso 98.1 1.4E-05 4.8E-10 105.0 16.0 117 499-643 122-267 (1104)
63 1gku_B Reverse gyrase, TOP-RG; 97.8 6.8E-05 2.3E-09 98.2 12.6 112 499-639 100-228 (1054)
64 3crv_A XPD/RAD3 related DNA he 97.5 0.00021 7.2E-09 87.2 10.9 36 499-534 48-84 (551)
65 2vl7_A XPD; helicase, unknown 97.5 0.00025 8.4E-09 86.4 11.3 31 499-533 52-83 (540)
66 2v6i_A RNA helicase; membrane, 97.4 0.00043 1.5E-08 81.9 10.4 101 499-639 32-137 (431)
67 3llm_A ATP-dependent RNA helic 97.3 0.00097 3.3E-08 71.9 11.2 104 500-639 111-221 (235)
68 4f92_B U5 small nuclear ribonu 97.3 0.0021 7.2E-08 87.9 16.8 118 499-646 135-262 (1724)
69 3o8b_A HCV NS3 protease/helica 97.0 0.002 6.7E-08 80.0 11.6 99 500-638 259-362 (666)
70 4f92_B U5 small nuclear ribonu 97.0 0.0025 8.6E-08 87.1 13.4 119 499-647 973-1102(1724)
71 2jlq_A Serine protease subunit 96.9 0.0025 8.4E-08 75.8 10.1 101 499-639 49-154 (451)
72 2rsd_A E3 SUMO-protein ligase 96.8 0.00035 1.2E-08 61.5 1.9 55 411-487 8-64 (68)
73 3o7a_A PHD finger protein 13 v 96.8 0.00036 1.2E-08 58.1 1.5 49 412-487 3-51 (52)
74 3o70_A PHD finger protein 13; 96.6 0.00074 2.5E-08 59.4 2.2 51 410-487 16-66 (68)
75 1wee_A PHD finger family prote 96.6 0.00066 2.2E-08 60.3 1.9 52 411-487 14-65 (72)
76 2z83_A Helicase/nucleoside tri 96.5 0.0057 2E-07 72.8 9.9 101 499-639 51-156 (459)
77 1wew_A DNA-binding family prot 96.4 0.0007 2.4E-08 61.1 0.8 55 412-487 15-71 (78)
78 2whx_A Serine protease/ntpase/ 96.4 0.0089 3E-07 74.0 10.7 101 499-639 216-321 (618)
79 3kqi_A GRC5, PHD finger protei 96.2 0.001 3.4E-08 59.6 0.9 58 409-490 6-63 (75)
80 2lv9_A Histone-lysine N-methyl 96.1 0.0022 7.6E-08 60.4 2.4 35 411-449 26-60 (98)
81 1yks_A Genome polyprotein [con 96.1 0.016 5.5E-07 68.6 10.4 41 598-639 99-143 (440)
82 2wv9_A Flavivirin protease NS2 96.1 0.011 3.8E-07 73.8 9.4 41 598-639 332-376 (673)
83 2ipc_A Preprotein translocase 95.9 0.042 1.4E-06 69.5 13.4 110 500-647 122-238 (997)
84 1wep_A PHF8; structural genomi 95.9 0.002 6.9E-08 58.2 1.1 54 411-488 10-63 (79)
85 1we9_A PHD finger family prote 95.8 0.0039 1.3E-07 53.9 2.7 50 414-487 7-57 (64)
86 1wem_A Death associated transc 95.4 0.0011 3.9E-08 59.4 -2.3 55 413-488 16-70 (76)
87 4a15_A XPD helicase, ATP-depen 95.0 0.02 6.9E-07 70.8 6.3 21 360-380 25-45 (620)
88 2xau_A PRE-mRNA-splicing facto 94.7 0.061 2.1E-06 68.2 9.4 104 500-636 142-250 (773)
89 1nkt_A Preprotein translocase 94.3 0.25 8.5E-06 62.7 13.5 88 499-611 153-244 (922)
90 3rc3_A ATP-dependent RNA helic 94.1 0.24 8.3E-06 61.8 12.9 94 501-635 182-280 (677)
91 2kgg_A Histone demethylase jar 94.0 0.0089 3E-07 49.6 -0.2 32 416-450 6-38 (52)
92 1tf5_A Preprotein translocase 93.9 0.2 6.8E-06 63.4 11.5 86 500-610 126-215 (844)
93 4b3f_X DNA-binding protein smu 93.9 0.34 1.1E-05 60.1 13.6 40 594-638 362-401 (646)
94 2fsf_A Preprotein translocase 93.9 0.2 6.7E-06 63.4 11.3 87 500-611 117-207 (853)
95 2gk6_A Regulator of nonsense t 93.5 0.68 2.3E-05 57.2 15.2 42 594-639 335-376 (624)
96 3kv5_D JMJC domain-containing 93.3 0.012 4.2E-07 70.4 -0.7 56 410-489 34-89 (488)
97 1x4i_A Inhibitor of growth pro 93.1 0.02 6.7E-07 50.6 0.5 50 412-490 5-57 (70)
98 2k16_A Transcription initiatio 93.1 0.036 1.2E-06 49.3 2.2 51 413-489 18-69 (75)
99 3kv4_A PHD finger protein 8; e 93.1 0.01 3.5E-07 70.1 -1.9 54 412-489 4-57 (447)
100 2xb1_A Pygopus homolog 2, B-ce 92.6 0.016 5.4E-07 55.3 -1.0 45 428-488 16-61 (105)
101 2jmi_A Protein YNG1, ING1 homo 92.5 0.059 2E-06 49.9 2.7 52 410-490 23-78 (90)
102 2ri7_A Nucleosome-remodeling f 92.5 0.02 6.8E-07 59.2 -0.5 54 412-489 7-60 (174)
103 1weu_A Inhibitor of growth fam 92.1 0.076 2.6E-06 49.2 3.0 47 412-487 35-84 (91)
104 2wjy_A Regulator of nonsense t 91.9 1.2 4.2E-05 56.5 14.7 42 594-639 511-552 (800)
105 1wen_A Inhibitor of growth fam 91.6 0.087 3E-06 46.6 2.7 47 412-487 15-64 (71)
106 3lqh_A Histone-lysine N-methyl 91.0 0.067 2.3E-06 55.9 1.6 33 417-449 7-39 (183)
107 2g6q_A Inhibitor of growth pro 90.5 0.076 2.6E-06 45.7 1.2 47 412-487 10-59 (62)
108 3c6w_A P28ING5, inhibitor of g 90.3 0.079 2.7E-06 45.1 1.1 47 412-487 8-57 (59)
109 2xzl_A ATP-dependent helicase 90.3 1.2 4E-05 56.7 12.3 38 598-639 517-554 (802)
110 2vpb_A Hpygo1, pygopus homolog 90.2 0.019 6.6E-07 49.9 -2.9 33 418-450 11-44 (65)
111 2vnf_A ING 4, P29ING4, inhibit 87.9 0.18 6.1E-06 43.1 1.6 47 412-487 9-58 (60)
112 3e1s_A Exodeoxyribonuclease V, 87.9 1.6 5.6E-05 53.3 10.7 41 597-639 278-318 (574)
113 3pur_A Lysine-specific demethy 86.9 0.19 6.4E-06 60.1 1.6 41 427-488 54-94 (528)
114 2b8t_A Thymidine kinase; deoxy 86.4 3.4 0.00012 44.3 11.0 36 597-635 88-124 (223)
115 2j9r_A Thymidine kinase; TK1, 85.3 3.6 0.00012 43.9 10.3 35 598-635 101-136 (214)
116 3upu_A ATP-dependent DNA helic 80.8 5.7 0.00019 46.8 10.8 40 598-639 128-167 (459)
117 1xx6_A Thymidine kinase; NESG, 78.6 7.7 0.00026 40.4 9.7 51 598-651 81-138 (191)
118 2ku7_A MLL1 PHD3-CYP33 RRM chi 78.1 0.6 2E-05 45.4 1.0 19 431-449 2-20 (140)
119 1t5i_A C_terminal domain of A 65.9 3.1 0.00011 42.2 3.0 83 823-908 32-137 (172)
120 2yjt_D ATP-dependent RNA helic 69.3 1.3 4.3E-05 44.9 0.0 83 823-908 31-136 (170)
121 2hjv_A ATP-dependent RNA helic 64.6 3.4 0.00012 41.3 3.0 84 822-908 35-141 (163)
122 3jux_A Protein translocase sub 63.4 21 0.00071 44.9 10.0 104 802-908 455-586 (822)
123 2jgn_A DBX, DDX3, ATP-dependen 62.6 3.7 0.00013 42.2 2.9 85 822-909 46-153 (185)
124 2p6n_A ATP-dependent RNA helic 59.7 2.8 9.7E-05 43.4 1.3 84 823-909 55-161 (191)
125 1fuk_A Eukaryotic initiation f 54.9 5.9 0.0002 39.6 2.7 86 822-910 30-138 (165)
126 3rsn_A SET1/ASH2 histone methy 53.0 4.8 0.00016 41.6 1.6 34 414-450 6-39 (177)
127 3vkw_A Replicase large subunit 52.3 15 0.00053 43.3 6.1 131 500-639 127-272 (446)
128 1a5t_A Delta prime, HOLB; zinc 52.1 82 0.0028 35.1 12.0 22 359-380 26-47 (334)
129 2orw_A Thymidine kinase; TMTK, 48.4 12 0.00041 38.4 3.9 35 598-635 76-111 (184)
130 3syl_A Protein CBBX; photosynt 43.3 16 0.00054 40.0 4.0 21 359-379 69-89 (309)
131 1c4o_A DNA nucleotide excision 42.4 54 0.0018 40.6 9.1 32 499-532 54-86 (664)
132 4bbq_A Lysine-specific demethy 35.7 12 0.00042 35.6 1.4 27 424-450 68-94 (117)
133 1hv8_A Putative ATP-dependent 34.6 15 0.00052 40.6 2.2 84 823-909 239-345 (367)
134 2puy_A PHD finger protein 21A; 33.8 24 0.00081 29.6 2.7 39 429-489 15-53 (60)
135 3eaq_A Heat resistant RNA depe 32.1 22 0.00074 37.2 2.7 85 822-909 31-138 (212)
136 2d7d_A Uvrabc system protein B 31.4 1.1E+02 0.0037 37.8 9.3 32 499-532 58-90 (661)
137 2o0j_A Terminase, DNA packagin 28.4 50 0.0017 38.1 5.2 55 593-650 268-325 (385)
138 2e6r_A Jumonji/ARID domain-con 27.6 32 0.0011 31.6 2.7 45 417-487 21-65 (92)
139 2yql_A PHD finger protein 21A; 26.6 33 0.0011 28.4 2.3 20 429-448 19-38 (56)
140 1fuu_A Yeast initiation factor 24.6 16 0.00054 41.1 0.0 84 823-909 260-366 (394)
141 1f62_A Transcription factor WS 24.3 25 0.00084 28.4 1.1 19 429-447 13-31 (51)
142 1w36_D RECD, exodeoxyribonucle 23.7 49 0.0017 40.4 4.2 42 598-641 262-303 (608)
143 1e0l_A Formin binding protein; 22.5 35 0.0012 25.9 1.6 30 322-352 5-34 (37)
144 1xwh_A Autoimmune regulator; P 22.3 57 0.0019 27.9 3.1 37 429-487 18-54 (66)
145 2rb4_A ATP-dependent RNA helic 22.1 23 0.0008 35.5 0.7 85 823-910 35-148 (175)
146 3ghg_A Fibrinogen alpha chain; 22.0 1.2E+02 0.0042 36.0 6.7 43 1061-1108 118-161 (562)
147 2orv_A Thymidine kinase; TP4A 20.9 77 0.0026 34.1 4.4 34 598-635 90-124 (234)
148 2r2a_A Uncharacterized protein 20.8 34 0.0012 35.7 1.7 39 599-637 88-133 (199)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.6e-60 Score=585.93 Aligned_cols=369 Identities=15% Similarity=0.207 Sum_probs=278.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchh----hhhccCCcEEEEehHHHhhhcccCCCC
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD----ISELVGADIVLTTYDVLKEDLSHDSDR 573 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~----~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1207)
.+++|||||.+++.||.+||.+|++. .+.++.++|..+..... .... ......++|+||||++++.+..
T Consensus 114 ~~~~LiV~P~sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----- 186 (644)
T 1z3i_X 114 IDKVIVVSPSSLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDS-KLVNFISQQGMRIPTPILIISYETFRLHAE----- 186 (644)
T ss_dssp CSCEEEEECHHHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHH-HHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-----
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHH-HHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-----
Confidence 46899999999999999999999864 46666666543211000 0000 0011358999999999998642
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCC
Q 000967 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1207)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p 653 (1207)
.|....|++||+||||++||..++.++++..+++.+||+|||||+||++.|||+|++||+|
T Consensus 187 -------------------~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p 247 (644)
T 1z3i_X 187 -------------------VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNS 247 (644)
T ss_dssp -------------------TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHH
T ss_pred -------------------HhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCC
Confidence 3667799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhhcCCCCCCC------------cchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHH
Q 000967 654 SPFSISRWWIEVIRDPYENGD------------VGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEH 721 (1207)
Q Consensus 654 ~~f~~~~~F~~~~~~pi~~~~------------~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~ 721 (1207)
++|++...|.+.|..|+..+. ...+..|+.+++++|+||+|.++... ||++.+.+++|+||+.|++
T Consensus 248 ~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~--LP~k~~~~v~~~ls~~q~~ 325 (644)
T 1z3i_X 248 GILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY--LPVKIEQVVCCNLTPLQKE 325 (644)
T ss_dssp HHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT--SCCEEEEEEEECCCHHHHH
T ss_pred CcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhh--CCCceEEEEEeCCCHHHHH
Confidence 999999999999988775421 13467899999999999999999776 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccc-------
Q 000967 722 FYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLR------- 794 (1207)
Q Consensus 722 lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~------- 794 (1207)
+|+.+.+.... .... ..+ .....++..+++|||+||||.++.....
T Consensus 326 lY~~~~~~~~~--------------~~~~-----~~g--------~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~ 378 (644)
T 1z3i_X 326 LYKLFLKQAKP--------------VESL-----QTG--------KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFD 378 (644)
T ss_dssp HHHHHHHHHCG--------------GGSS-----CTT--------CCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCT
T ss_pred HHHHHHHHHHH--------------HHHH-----hcC--------ccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhh
Confidence 99987653211 0000 000 1124678999999999999987532110
Q ss_pred c----ccC---------CCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHH---HH--HHHHH
Q 000967 795 S----LQQ---------SPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---KE--AMAVV 856 (1207)
Q Consensus 795 ~----l~~---------~~~t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y---~~--~l~~~ 856 (1207)
. ... .......++..|+..+... ..+++|||+|+..++++|+..+......| .+ ....+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~---~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R 455 (644)
T 1z3i_X 379 GALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTT---TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKR 455 (644)
T ss_dssp TGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHH---CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHH
T ss_pred hHHhhccccccccccCcccChHHHHHHHHHHHHhhc---CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHH
Confidence 0 000 0011224556666554432 34899999999999999998876543222 22 23467
Q ss_pred HHHHhhccCCCCc---ce-----------------eEEecCCCCCccchhhhh-hhhccCCCCceEEEEcccCCcccccc
Q 000967 857 EEHSEDFRLDPLL---NI-----------------HLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCD 915 (1207)
Q Consensus 857 ~e~~~~fr~D~~~---~l-----------------h~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~ 915 (1207)
++.+++|+.+... .+ .++|++ +|||+.+.||+ |+||+||+++|.|||+++.+|+||+|
T Consensus 456 ~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~-~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i 534 (644)
T 1z3i_X 456 AKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP-DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKI 534 (644)
T ss_dssp HHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC-CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECC-CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHH
Confidence 7888888876432 11 334444 59999999999 99999999999999999999999999
Q ss_pred hhHhhhhccc
Q 000967 916 ENARKCQRVS 925 (1207)
Q Consensus 916 ~~~~k~~~~~ 925 (1207)
++++.+|+-.
T Consensus 535 ~~~~~~K~~l 544 (644)
T 1z3i_X 535 LQRQAHKKAL 544 (644)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-58 Score=587.46 Aligned_cols=367 Identities=16% Similarity=0.198 Sum_probs=273.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCcccccccc-------chhhhhccCCcEEEEehHHHhhhcccC
Q 000967 498 TGATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTS-------IMDISELVGADIVLTTYDVLKEDLSHD 570 (1207)
Q Consensus 498 ~~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~-------~~~~~~l~~~DVVITTYetL~~d~~~~ 570 (1207)
.+|+|||||.+++.||.+||.+|+| .+++.+|+|....+..... .........+||+||||+++.++..
T Consensus 286 ~~~~LIV~P~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~-- 361 (800)
T 3mwy_W 286 NGPHIIVVPLSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA-- 361 (800)
T ss_dssp CSCEEEECCTTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--
Confidence 3689999999999999999999997 8999999998654311000 0011345678999999999988642
Q ss_pred CCCcccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhc
Q 000967 571 SDRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1207)
Q Consensus 571 ~~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~F 650 (1207)
.|..+.|++||+||||++||..++.++++..+++.+||+|||||++|++.|||+|++|
T Consensus 362 ----------------------~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~f 419 (800)
T 3mwy_W 362 ----------------------ELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNF 419 (800)
T ss_dssp ----------------------HHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHH
T ss_pred ----------------------HHhcCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Q 000967 651 LKSSPFSISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETC 730 (1207)
Q Consensus 651 L~p~~f~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~ 730 (1207)
|.|+.|+....|..... .......+..|+.+++|+|+||+|.+|... ||++.+.+++|+||+.|+.+|+.+....
T Consensus 420 L~p~~~~~~~~~~~~~~---~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~~~~ 494 (800)
T 3mwy_W 420 LMPGRFTIDQEIDFENQ---DEEQEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNILTKN 494 (800)
T ss_dssp HCSCCC---------CC---TTHHHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHHHHC
T ss_pred hCccccCchhhhccccc---chhHHHHHHHHHHHHhHHHhhhhHHhhhhc--cCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999987766542111 112234577899999999999999999765 9999999999999999999999886542
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccc----cCCCCCHH--
Q 000967 731 VGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSL----QQSPLSMD-- 804 (1207)
Q Consensus 731 ~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l----~~~~~t~e-- 804 (1207)
...... + .......+++.+++|||+|+||.|........ ....++.+
T Consensus 495 ~~~l~~---------------------~------~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 495 YSALTA---------------------G------AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CC-------------------------------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred HHHHhh---------------------c------cccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 221100 0 01112358899999999999999875433221 11112212
Q ss_pred -----------HHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHH---H--HHHHHHHHHHhhccCCCC
Q 000967 805 -----------EILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLY---K--EAMAVVEEHSEDFRLDPL 868 (1207)
Q Consensus 805 -----------elL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y---~--~~l~~~~e~~~~fr~D~~ 868 (1207)
.+|..++.++ .+.++++|||+|++.++++|+..+......| . .....+++.++.|+....
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~----~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRL----KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH----TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred HHHhhhcChHHHHHHHHHHHH----hhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 2344444443 3445899999999999999999887653332 1 223577888889987332
Q ss_pred c---c-----------------eeEEecCCCCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhccccc
Q 000967 869 L---N-----------------IHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQRVSRE 927 (1207)
Q Consensus 869 ~---~-----------------lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~~~~~ 927 (1207)
. . ..++|+. +|||+.+.||+ |||||||+++|.||||++++|+||+|++.+++|.....
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~-~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~ 702 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDS-DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEY 702 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSC-CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC
T ss_pred CceEEEEecccccCCCCccccceEEEecC-CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 1 1 1344444 59999999999 99999999999999999999999999999999875543
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.1e-55 Score=528.33 Aligned_cols=355 Identities=23% Similarity=0.310 Sum_probs=278.1
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
+++|||||.+++.||.+||++|++ .+++.+|+|.... .....+||+||||+++.++.
T Consensus 87 ~~~LIv~P~~l~~qw~~e~~~~~~--~~~v~~~~g~~~~----------~~~~~~~ivi~t~~~l~~~~----------- 143 (500)
T 1z63_A 87 TPSLVICPLSVLKNWEEELSKFAP--HLRFAVFHEDRSK----------IKLEDYDIILTTYAVLLRDT----------- 143 (500)
T ss_dssp SSEEEEECSTTHHHHHHHHHHHCT--TSCEEECSSSTTS----------CCGGGSSEEEEEHHHHTTCH-----------
T ss_pred CCEEEEccHHHHHHHHHHHHHHCC--CceEEEEecCchh----------ccccCCcEEEeeHHHHhccc-----------
Confidence 689999999999999999999997 7899999987532 23467899999999998753
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCCCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPFSI 658 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f~~ 658 (1207)
.+....|++||+||||+++|..++.++++..+++.+||+|||||++|++.|||++++||+|++|++
T Consensus 144 --------------~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~ 209 (500)
T 1z63_A 144 --------------RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGS 209 (500)
T ss_dssp --------------HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCC
T ss_pred --------------hhcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCC
Confidence 256678999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 000967 659 SRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVI 738 (1207)
Q Consensus 659 ~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~ 738 (1207)
...|.+.|..|+..++....+.|+.+++++++||+|.+......||++.+.+++++|++.|+.+|+.+.+.....
T Consensus 210 ~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~----- 284 (500)
T 1z63_A 210 YSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNN----- 284 (500)
T ss_dssp HHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHH-----
Confidence 999999999998888888888999999999999999874333459999999999999999999999876532111
Q ss_pred HHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhh
Q 000967 739 QRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEG 818 (1207)
Q Consensus 739 ~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~k~~~e~ 818 (1207)
+. . .........++..+++|||+|+||.+...+.... ......+.+..++.+...
T Consensus 285 ------~~---------~------~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~--~~s~K~~~l~~~l~~~~~-- 339 (500)
T 1z63_A 285 ------ID---------S------VTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSV--RRSGKMIRTMEIIEEALD-- 339 (500)
T ss_dssp ------TT---------T------CCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCS--TTCHHHHHHHHHHHHHHT--
T ss_pred ------HH---------h------hhcccchHHHHHHHHHHHHHhCCHHHhcCccchh--hcchhHHHHHHHHHHHHc--
Confidence 00 0 0012335678999999999999999865332111 111122344444444433
Q ss_pred hhhcchHHHHHhHHHHHHHHHHHhhhh-H---HHHHHH--HHHHHHHHhhccCCCCc-------------------ceeE
Q 000967 819 EEALRKLVMALNGLAGIALIEKNLSQA-V---SLYKEA--MAVVEEHSEDFRLDPLL-------------------NIHL 873 (1207)
Q Consensus 819 eea~rkvLifsq~la~L~iLe~~l~~a-~---~~y~~~--l~~~~e~~~~fr~D~~~-------------------~lh~ 873 (1207)
..++++||+++..++++|...+... . ..+.+. ...+++.++.|+.++.. ...+
T Consensus 340 --~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 340 --EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp --TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred --cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 3489999999999999999887653 1 111221 24566677777665321 1133
Q ss_pred EecCCCCCccchhhhh-hhhccCCCCceEEEEcccCCcccccchhHhhhhc
Q 000967 874 HHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKIHSIETCDENARKCQR 923 (1207)
Q Consensus 874 ~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~tiee~~~~~~k~~~ 923 (1207)
++++ +|||+...||. |+||+||+++|.||++++++|+||++++++.+|+
T Consensus 418 ~~d~-~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~ 467 (500)
T 1z63_A 418 HFDR-WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 467 (500)
T ss_dssp ESSC-CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCS
T ss_pred EeCC-CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 4444 59999999999 9999999999999999999999999999988765
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.6e-35 Score=382.91 Aligned_cols=346 Identities=14% Similarity=0.141 Sum_probs=234.8
Q ss_pred CcEEEEeCCchHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 499 GATLIVCPAPILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 499 ~~tLIV~P~SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
+++|||||.+|+.||..||.+++ ++++.+|+|...... .......+..++|||+||+++.++...
T Consensus 201 ~rvLIVvP~sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~---~~~~~~~~~~~dIvI~T~~~L~~~~~~--------- 265 (968)
T 3dmq_A 201 ERVLIIVPETLQHQWLVEMLRRF---NLRFALFDDERYAEA---QHDAYNPFDTEQLVICSLDFARRSKQR--------- 265 (968)
T ss_dssp CCEEEECCTTTHHHHHHHHHHHS---CCCCEECCHHHHHHH---HHTTCSSSTTCSEEEECHHHHHTSTTT---------
T ss_pred CeEEEEeCHHHHHHHHHHHHHHh---CCCEEEEccchhhhh---hhhcccccccCCEEEEcHHHHhhCHHH---------
Confidence 58999999999999999999988 588888887643210 001123446789999999999875321
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHH---HHHHHHHh--ccCeEEEEeccCCCCChhhhHhhhhccCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA---ATEMALRL--YAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk---~~kal~~L--~a~~RwlLTGTPIqN~l~DL~sLL~FL~p 653 (1207)
...+....|++||+||||+++|..+. .++++..| ++.++|+|||||++|++.|+|++++|+.|
T Consensus 266 ------------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p 333 (968)
T 3dmq_A 266 ------------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDP 333 (968)
T ss_dssp ------------THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCT
T ss_pred ------------HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCc
Confidence 02356678999999999999997754 48888888 67889999999999999999999999999
Q ss_pred CCCCChhhhhhhhcCC---------CCCC----------------------------------CcchHHHHHHHH-----
Q 000967 654 SPFSISRWWIEVIRDP---------YENG----------------------------------DVGAMEFTHKFF----- 685 (1207)
Q Consensus 654 ~~f~~~~~F~~~~~~p---------i~~~----------------------------------~~~~~~~L~~lL----- 685 (1207)
+.|++...|...+... +..+ .......+..++
T Consensus 334 ~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~ 413 (968)
T 3dmq_A 334 NRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGT 413 (968)
T ss_dssp TTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTT
T ss_pred cccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCc
Confidence 9999987776443110 0000 001112233333
Q ss_pred HhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccc
Q 000967 686 KEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIIT 765 (1207)
Q Consensus 686 ~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~ 765 (1207)
..+++|+++..+. .+|++....+.+.+++.++..|+.... ..+ .....
T Consensus 414 ~~~l~r~~r~~i~---~~p~r~~~~~~l~~~~~~~~~~~~~~~-----------------~~~--------~~~~~---- 461 (968)
T 3dmq_A 414 SRVLFRNTRNGVK---GFPKRELHTIKLPLPTQYQTAIKVSGI-----------------MGA--------RKSAE---- 461 (968)
T ss_dssp TTTEECCCTTTCC---CCCCCCCCEEEECCCHHHHHHHHHHHH-----------------TTC--------CSSGG----
T ss_pred chhhhhhhhhhhc---ccChhheEeeecCCCHHHHHHHHHHhh-----------------hhh--------hhhhH----
Confidence 3467778787773 589999999999999999998874211 000 00000
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCcccccccCC---CCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHh
Q 000967 766 HAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQS---PLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNL 842 (1207)
Q Consensus 766 ~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~---~~t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l 842 (1207)
.....+.+|......+...... .....+.+..++.. ....+++||++....++.|...+
T Consensus 462 ------------~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~------~~~~k~iVF~~~~~~~~~l~~~L 523 (968)
T 3dmq_A 462 ------------DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS------HRSQKVLVICAKAATALQLEQVL 523 (968)
T ss_dssp ------------GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH------TSSSCCCEECSSTHHHHHHHHHH
T ss_pred ------------HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh------CCCCCEEEEeCcHHHHHHHHHHH
Confidence 0011233454433222211101 11122334444432 34589999999999999999888
Q ss_pred hhh----HHHHHHH--HHHHHHHHhhccCCC--C-----------------cceeEEecCCCCCccchhhhh-hhhccCC
Q 000967 843 SQA----VSLYKEA--MAVVEEHSEDFRLDP--L-----------------LNIHLHHNLTEILPMVANCAT-ELSQNEQ 896 (1207)
Q Consensus 843 ~~a----~~~y~~~--l~~~~e~~~~fr~D~--~-----------------~~lh~~~Nl~dwnpa~d~QA~-R~~riGQ 896 (1207)
... +..+.+. ...++..++.|+.+. . ....++|++ +|+|....|+. |++|+||
T Consensus 524 ~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~-p~~~~~~~Q~~GR~~R~Gq 602 (968)
T 3dmq_A 524 REREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL-PFNPDLLEQRIGRLDRIGQ 602 (968)
T ss_dssp HTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC-CSSHHHHHHHHHTTSCSSS
T ss_pred HHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC-CCCHHHHHHHhhccccCCC
Confidence 742 1222222 235666777777664 2 112334444 59999999999 9999999
Q ss_pred CCceEEEEcccCCcccccchhHhhhh
Q 000967 897 HFPGCSEKAFKIHSIETCDENARKCQ 922 (1207)
Q Consensus 897 ~~~v~vyRl~t~~tiee~~~~~~k~~ 922 (1207)
++.|.+|++++++|++|.++...++|
T Consensus 603 ~~~v~v~~~~~~~t~ee~i~~~~~~k 628 (968)
T 3dmq_A 603 AHDIQIHVPYLEKTAQSVLVRWYHEG 628 (968)
T ss_dssp CSCCEEEEEEETTSHHHHHHHHHHHT
T ss_pred CceEEEEEecCCChHHHHHHHHHHhC
Confidence 99999999999999999999888553
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=2.5e-27 Score=278.93 Aligned_cols=360 Identities=11% Similarity=0.042 Sum_probs=205.6
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|||||. +|+.||.+|+.+|+..+..++.+++|...... .......++|+|+||+++...+..
T Consensus 53 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~------~~~~~~~~~ivv~T~~~l~~~~~~-------- 118 (494)
T 1wp9_A 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEE------RSKAWARAKVIVATPQTIENDLLA-------- 118 (494)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHH------HHHHHHHCSEEEECHHHHHHHHHT--------
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhh------hhhhccCCCEEEecHHHHHHHHhc--------
Confidence 579999998 79999999999998433569999999754321 122335789999999999986532
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHH--HHHHHH-hccCeEEEEeccCCCCChhhhHhhhhccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAA--TEMALR-LYAKHRWCITGTPIQRKLDDLYGLLRFLKSS 654 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~--~kal~~-L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~ 654 (1207)
..+....|++||+||||++++..+.. .+.+.. .+..++|+|||||. |+..+++.++.++.+.
T Consensus 119 --------------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~ 183 (494)
T 1wp9_A 119 --------------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIE 183 (494)
T ss_dssp --------------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCC
T ss_pred --------------CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChh
Confidence 12445679999999999999754322 222222 35788999999999 7788888888888765
Q ss_pred CCCChh---hhhhhhcCCCC-----CCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHH
Q 000967 655 PFSISR---WWIEVIRDPYE-----NGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQ 726 (1207)
Q Consensus 655 ~f~~~~---~F~~~~~~pi~-----~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l 726 (1207)
.+.... .+...+..+.. ..-+.....+...+.+++.++.+...... -+++.. ..++..+......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~- 256 (494)
T 1wp9_A 184 HIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG-LLESSS-----PDIPKKEVLRAGQ- 256 (494)
T ss_dssp EEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT-SSSCCC-----TTSCHHHHHHHHH-
T ss_pred eeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc-cccccC-----CCcchhHHHHHHH-
Confidence 432211 11111111110 01123445566666677777666544322 133322 1222222111110
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcc---------------cchhhHHHHHHHHHHHHHHcCCCCCCCc
Q 000967 727 HETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPI---------------ITHAEAAKLLNSLLKLRQACCHPQVGSS 791 (1207)
Q Consensus 727 ~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~---------------~~~~~~~~iL~~L~rLRQiC~HP~L~~~ 791 (1207)
.+...+.... ....... ........+...+..|+..|.|+....
T Consensus 257 -------------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 315 (494)
T 1wp9_A 257 -------------IINEEMAKGN-------HDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA- 315 (494)
T ss_dssp -------------HHHHHHTTTC-------CSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHH-
T ss_pred -------------HHHHHhhccc-------cchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchh-
Confidence 0111111000 0000000 000111233445555666555532110
Q ss_pred cccccc------------------CCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhH---HHHH
Q 000967 792 GLRSLQ------------------QSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAV---SLYK 850 (1207)
Q Consensus 792 ~~~~l~------------------~~~~t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~---~~y~ 850 (1207)
...+. ......-+.+..++.+.... ...+++|||+++...++.|.+.+.... ..+.
T Consensus 316 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 392 (494)
T 1wp9_A 316 -SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFV 392 (494)
T ss_dssp -HHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred -hhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc--CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEe
Confidence 00000 00111112333333332211 235899999999999999999887641 1222
Q ss_pred H--------H--HHHHHHHHhhccCCCCc-----------------ceeEEecCCCCCccchhhhh-hhhccCCCCceEE
Q 000967 851 E--------A--MAVVEEHSEDFRLDPLL-----------------NIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCS 902 (1207)
Q Consensus 851 ~--------~--l~~~~e~~~~fr~D~~~-----------------~lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~v 902 (1207)
+ . ...+++.++.|+.+... ...+++++ .|||+...|+. ||+|.|| +.+
T Consensus 393 g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~-~~~~~~~~Qr~GR~~R~g~---g~~ 468 (494)
T 1wp9_A 393 GQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP-VPSAIRSIQRRGRTGRHMP---GRV 468 (494)
T ss_dssp CSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC-CHHHHHHHHHHTTSCSCCC---SEE
T ss_pred ccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC-CCCHHHHHHHHhhccCCCC---ceE
Confidence 2 2 23566666777665532 22344444 59999999999 9999998 899
Q ss_pred EEcccCCcccccchhHhhhh
Q 000967 903 EKAFKIHSIETCDENARKCQ 922 (1207)
Q Consensus 903 yRl~t~~tiee~~~~~~k~~ 922 (1207)
|++++.+|+||+++..+.+|
T Consensus 469 ~~l~~~~t~ee~~~~~~~~k 488 (494)
T 1wp9_A 469 IILMAKGTRDEAYYWSSRQK 488 (494)
T ss_dssp EEEEETTSHHHHHHHHCC--
T ss_pred EEEEecCCHHHHHHHHHHHH
Confidence 99999999999999877554
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=5.6e-25 Score=262.86 Aligned_cols=308 Identities=13% Similarity=0.089 Sum_probs=183.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCe-EEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~-V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+++|||||. +|+.||.++|.+| .++ +.+++|.... ..+|+|+||+.+.....
T Consensus 134 ~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~--------------~~~Ivv~T~~~l~~~~~-------- 187 (472)
T 2fwr_A 134 TPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE--------------LKPLTVSTYDSAYVNAE-------- 187 (472)
T ss_dssp SCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC--------------CCSEEEEEHHHHHHTHH--------
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC--------------cCCEEEEEcHHHHHHHH--------
Confidence 479999999 8999999999994 477 8999886532 36899999999876532
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhccCCCCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRFLKSSPF 656 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~FL~p~~f 656 (1207)
...-.|++||+||||++.+.... ..+..+.+.++++|||||.+++-.+
T Consensus 188 -----------------~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------- 235 (472)
T 2fwr_A 188 -----------------KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------- 235 (472)
T ss_dssp -----------------HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG-------------
T ss_pred -----------------HhcCCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEEEecCccCCCCHH-------------
Confidence 11235899999999999987643 3555678899999999999754211
Q ss_pred CChhhhhhhhcCCCCCCCcchHHHHHHHHHhHhhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000967 657 SISRWWIEVIRDPYENGDVGAMEFTHKFFKEIMCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYARE 736 (1207)
Q Consensus 657 ~~~~~F~~~~~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~ 736 (1207)
..+..++.+.+.+....++... -+++.....+.+++++.++..|+.+......
T Consensus 236 ----------------------~~l~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 288 (472)
T 2fwr_A 236 ----------------------EILKEVVGGKVFELFPDSLAGK-HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ---- 288 (472)
T ss_dssp ----------------------GSHHHHTCCEEEECCHHHHTSC-CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----
T ss_pred ----------------------HHHHHHhCCeEeecCHHHHhcC-cCCCeEEEEEEcCCCHHHHHHHHHHHHHHHH----
Confidence 0133444455555555554222 2778888889999999999999876543211
Q ss_pred HHHHHHHHHhhccCCCCCCCCCccCcccc----hhhHHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHH
Q 000967 737 VIQRLKDNILKRNVPGHASSDALYNPIIT----HAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIG 812 (1207)
Q Consensus 737 ~~~~~~~~~~~r~~~g~~~~~~~~~~~~~----~~~~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~ 812 (1207)
.............+. ...+. .......+......++++++.. ...+.+..++.
T Consensus 289 --------~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~k~~~l~~~l~ 345 (472)
T 2fwr_A 289 --------FLRARGITLRRAEDF-NKIVMASGYDERAYEALRAWEEARRIAFNSK--------------NKIRKLREILE 345 (472)
T ss_dssp --------CSSSCCCTTTCCSSS-TTTTTTTCCSSSSSTTTHHHHHHHHHHHSCS--------------HHHHHHHHHHH
T ss_pred --------HHHhcCccccchhhH-HHHHHHhccCHHHHHHHHHHHHHHHHhhcCh--------------HHHHHHHHHHH
Confidence 110000000000000 00000 0000001111222333332211 01133333443
Q ss_pred HHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccCCCC-----------------cceeEEe
Q 000967 813 KTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKEAMAVVEEHSEDFRLDPL-----------------LNIHLHH 875 (1207)
Q Consensus 813 k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~~l~~~~e~~~~fr~D~~-----------------~~lh~~~ 875 (1207)
. ...++++||++....++.|.+.+.............+++..+.|+.... ..+.+.+
T Consensus 346 ~------~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~ 419 (472)
T 2fwr_A 346 R------HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIM 419 (472)
T ss_dssp H------TSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEE
T ss_pred h------CCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEE
Confidence 2 2358999999999999999988753322211111233444444443222 2235555
Q ss_pred cCCCCCccchhhhh-hhhccCCC-CceEEEEcccCCcccccchhHhhh
Q 000967 876 NLTEILPMVANCAT-ELSQNEQH-FPGCSEKAFKIHSIETCDENARKC 921 (1207)
Q Consensus 876 Nl~dwnpa~d~QA~-R~~riGQ~-~~v~vyRl~t~~tiee~~~~~~k~ 921 (1207)
+.. |+|+...|+. ||+|+||. +.|.+|.+++++|+||.+....++
T Consensus 420 ~~~-~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~ 466 (472)
T 2fwr_A 420 SGS-GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKN 466 (472)
T ss_dssp CCS-SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC----------
T ss_pred CCC-CCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHH
Confidence 554 9999999999 99999998 899999999999999998855543
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.87 E-value=6.5e-23 Score=229.13 Aligned_cols=203 Identities=16% Similarity=0.126 Sum_probs=121.4
Q ss_pred hhhcccccccccCCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhh
Q 000967 689 MCRSSKVHVSDELQLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAE 768 (1207)
Q Consensus 689 mLRRtK~dV~~eL~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~ 768 (1207)
-+||+|++|..+ |||+.+.+++|+||+.|+++|+.+.+...... . . .. ....
T Consensus 13 ~~rr~k~~v~~~--LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~-----------~-~-------~~-------~~~~ 64 (271)
T 1z5z_A 13 GLVPRGSHMASD--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNI-----------D-S-------VT-------GIKR 64 (271)
T ss_dssp -----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT-----------T-T-------CC-------HHHH
T ss_pred cccccHHHHHhh--CCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHH-----------H-h-------cc-------ccch
Confidence 589999999776 99999999999999999999998876432211 0 0 00 1123
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccccccCCCCCHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhh-H-
Q 000967 769 AAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPLSMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQA-V- 846 (1207)
Q Consensus 769 ~~~iL~~L~rLRQiC~HP~L~~~~~~~l~~~~~t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a-~- 846 (1207)
...+++.|++|||+||||.+...... . ......-+.|..++.++... .+++|||+|+..++++|+..+... .
T Consensus 65 ~~~~l~~l~~Lrq~~~hP~l~~~~~~-~-~~~s~K~~~L~~ll~~~~~~----~~kvlIFs~~~~~~~~l~~~L~~~~g~ 138 (271)
T 1z5z_A 65 KGMILSTLLKLKQIVDHPALLKGGEQ-S-VRRSGKMIRTMEIIEEALDE----GDKIAIFTQFVDMGKIIRNIIEKELNT 138 (271)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHCSCC-C-STTCHHHHHHHHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCCcc-c-cccCHHHHHHHHHHHHHHhC----CCeEEEEeccHHHHHHHHHHHHHhcCC
Confidence 45789999999999999998753211 1 11122335556666655443 489999999999999999988653 1
Q ss_pred --HHHHHH--HHHHHHHHhhccCCCCcc-------------------eeEEecCCCCCccchhhhh-hhhccCCCCceEE
Q 000967 847 --SLYKEA--MAVVEEHSEDFRLDPLLN-------------------IHLHHNLTEILPMVANCAT-ELSQNEQHFPGCS 902 (1207)
Q Consensus 847 --~~y~~~--l~~~~e~~~~fr~D~~~~-------------------lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~v 902 (1207)
..+.+. ...+++.++.|+.++... ..++|++ +|||+.+.||+ |+||+||+++|.|
T Consensus 139 ~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~-~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 139 EVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR-WWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp CCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSC-CSCTTTC--------------CCEE
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECC-CCChhHHHHHHHhccccCCCCceEE
Confidence 112222 346777777887764221 1344444 59999999999 9999999999999
Q ss_pred EEcccCCcccccchhHhhhhcccc
Q 000967 903 EKAFKIHSIETCDENARKCQRVSR 926 (1207)
Q Consensus 903 yRl~t~~tiee~~~~~~k~~~~~~ 926 (1207)
||+++.+|+||+|++++.+|+-..
T Consensus 218 ~~li~~~TiEe~i~~~~~~K~~l~ 241 (271)
T 1z5z_A 218 HKLISVGTLEEKIDQLLAFKRSLF 241 (271)
T ss_dssp EEEEETTSHHHHHHHHHHHCHHHH
T ss_pred EEEeeCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988766443
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.83 E-value=1.2e-19 Score=234.36 Aligned_cols=122 Identities=13% Similarity=0.103 Sum_probs=84.7
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
.+++|||||.. |+.||.+++.++++..++++.+++|....... .......++|+|+||+.|...+...
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~-----~~~~~~~~~IvI~Tp~~L~~~l~~~------ 364 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFEDG------ 364 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----C-----CHHHHHHCSEEEECHHHHHHHHHSS------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhH-----HHHhccCCCEEEecHHHHHHHHHcC------
Confidence 35799999975 89999999999986557999999997643211 1122346899999999998865320
Q ss_pred chhhhhhcccCCCccccc-cccccceeeccCccccCChhHHHHHHHHHhcc--------CeEEEEeccCCCCChhhhHh
Q 000967 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLYA--------KHRWCITGTPIQRKLDDLYG 646 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a--------~~RwlLTGTPIqN~l~DL~s 646 (1207)
.+ ..-.|++||+||||++.+..+....+...+.. .++++|||||.+++..++..
T Consensus 365 ----------------~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~ 427 (936)
T 4a2w_A 365 ----------------TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427 (936)
T ss_dssp ----------------SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHH
T ss_pred ----------------ccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHH
Confidence 12 23468999999999999876522222222222 67999999999877655444
No 9
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.82 E-value=7.1e-19 Score=212.34 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=85.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|||||. .|+.||.+++.++++...+++..++|....... .......++|+|+||+.+...+...
T Consensus 53 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~------- 120 (555)
T 3tbk_A 53 GKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS-----VQHIIEDNDIIILTPQILVNNLNNG------- 120 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC-----HHHHHHHCSEEEECHHHHHHHHHTS-------
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh-----HHHHhcCCCEEEECHHHHHHHHhcC-------
Confidence 579999999 799999999999986557899999997643211 1122346899999999998865320
Q ss_pred hhhhhhcccCCCccccc-cccccceeeccCccccCChhHHHHHHHHHhc---------cCeEEEEeccCCCCChhhh
Q 000967 578 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY---------AKHRWCITGTPIQRKLDDL 644 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~---------a~~RwlLTGTPIqN~l~DL 644 (1207)
.+ ..-.|++||+||||++.+..+....+...+. ..++++|||||.+++..++
T Consensus 121 ---------------~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~ 182 (555)
T 3tbk_A 121 ---------------AIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTA 182 (555)
T ss_dssp ---------------SSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSH
T ss_pred ---------------cccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccH
Confidence 12 3346899999999999887643332222232 2479999999999874443
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.81 E-value=1.1e-18 Score=211.08 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=81.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|||||. .|+.||.+++.++++...+++..++|....... .......++|+|+|++.|...+..
T Consensus 56 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~-------- 122 (556)
T 4a2p_A 56 AKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFED-------- 122 (556)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----C-----HHHHHHHCSEEEECHHHHHHHHHS--------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchh-----HHHhhCCCCEEEECHHHHHHHHHh--------
Confidence 579999998 799999999999986547899999987543211 112234689999999999886532
Q ss_pred hhhhhhcccCCCccccc-cccccceeeccCccccCChhHHHHHHHHHh--------ccCeEEEEeccCCCCChhh
Q 000967 578 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRL--------YAKHRWCITGTPIQRKLDD 643 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~~Sk~~kal~~L--------~a~~RwlLTGTPIqN~l~D 643 (1207)
..+ ..-.|++||+||||++.+.......+...+ +..++++|||||.+++..+
T Consensus 123 --------------~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~ 183 (556)
T 4a2p_A 123 --------------GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKN 183 (556)
T ss_dssp --------------SSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSS
T ss_pred --------------CcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhh
Confidence 012 234688999999999987764222211222 2267999999999876433
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.81 E-value=4.3e-19 Score=225.97 Aligned_cols=122 Identities=13% Similarity=0.097 Sum_probs=84.0
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 498 TGATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 498 ~~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
.+++|||||.. |+.||.+++.++++..++++..++|....... .......++|+|+||+.|...+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~~~Ivv~Tp~~l~~~l~~------- 363 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS-----VEKVIEDSDIIVVTPQILVNSFED------- 363 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C-----HHHHHHTCSEEEECHHHHHHHHHS-------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhh-----HHHhhCCCCEEEEchHHHHHHHHh-------
Confidence 36799999975 89999999999986557899999997643211 122335789999999999886532
Q ss_pred chhhhhhcccCCCccccc-cccccceeeccCccccCChhHHHHHHHHHhc--------cCeEEEEeccCCCCChhhhHh
Q 000967 577 DRRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRLY--------AKHRWCITGTPIQRKLDDLYG 646 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~--------a~~RwlLTGTPIqN~l~DL~s 646 (1207)
..+ ..-.|++||+||||++.+..+....+...+. ..++++|||||.+++..++..
T Consensus 364 ---------------~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~ 427 (797)
T 4a2q_A 364 ---------------GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427 (797)
T ss_dssp ---------------SSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHH
T ss_pred ---------------ccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHH
Confidence 012 2346899999999999987642222212222 257999999999876544443
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.79 E-value=1.2e-18 Score=210.11 Aligned_cols=119 Identities=11% Similarity=0.131 Sum_probs=86.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|||||. +|+.||.+++.++...+..++..++|..... .......+|+|+||+.+.+...
T Consensus 158 ~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~I~i~T~~~l~~~~~--------- 220 (510)
T 2oca_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKD--------DKYKNDAPVVVGTWQTVVKQPK--------- 220 (510)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTT--------GGGCTTCSEEEEEHHHHTTSCG---------
T ss_pred CeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccc--------cccccCCcEEEEeHHHHhhchh---------
Confidence 379999998 6889999999998543357888888764331 1134568999999998876411
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHh-ccCeEEEEeccCCCCChhhhHhhhhccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPIqN~l~DL~sLL~FL~p 653 (1207)
..--.|++||+||+|++.+. ...+.+..+ .+.++++||||| .+...+++.+..++++
T Consensus 221 ----------------~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~ 278 (510)
T 2oca_A 221 ----------------EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGE 278 (510)
T ss_dssp ----------------GGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCS
T ss_pred ----------------hhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCC
Confidence 11236899999999999863 233444556 577899999999 6666677777766665
No 13
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.76 E-value=1.6e-19 Score=203.96 Aligned_cols=195 Identities=10% Similarity=-0.047 Sum_probs=119.9
Q ss_pred CCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccCcccchhhHHHHHHHHHHHHH
Q 000967 702 QLPPQEECVSWLTFSPIEEHFYQSQHETCVGYAREVIQRLKDNILKRNVPGHASSDALYNPIITHAEAAKLLNSLLKLRQ 781 (1207)
Q Consensus 702 ~LPpk~e~vv~v~LS~~Qr~lY~~l~e~~~~~a~~~~~~~~~~~~~r~~~g~~~~~~~~~~~~~~~~~~~iL~~L~rLRQ 781 (1207)
.-|++.|+++++.||+.|+++|+.+.......+...++. . ... +..-..++.+.+++||+
T Consensus 19 ~~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~-------~-------~~~------~~~~~~sl~nli~qLRk 78 (328)
T 3hgt_A 19 SGNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFET-------S-------HYK------EDVILESMKTMCLNGSL 78 (328)
T ss_dssp ---CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHT-------T-------TTC------CHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhc-------C-------CCc------cchHHHHHHHHHHHHHH
Confidence 349999999999999999999999976544333322211 0 000 01123568899999999
Q ss_pred HcCCCCCCCcccccccCCCC----------CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHHHHH
Q 000967 782 ACCHPQVGSSGLRSLQQSPL----------SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSLYKE 851 (1207)
Q Consensus 782 iC~HP~L~~~~~~~l~~~~~----------t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~y~~ 851 (1207)
+||||+|............. ..-.+|+.|+.+++. .+|++|+|+|++.+|++||+.+......|.+
T Consensus 79 icnHP~L~~d~~~p~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~----~~~kVLIfsq~t~~LDilE~~l~~~~~~y~R 154 (328)
T 3hgt_A 79 VATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQE----YETETAIVCRPGRTMDLLEALLLGNKVHIKR 154 (328)
T ss_dssp HHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHHHHHHTT----SCEEEEEEECSTHHHHHHHHHHTTSSCEEEE
T ss_pred HcCChhhhccccCCccccccchhhHHHHcCccHHHHHHHHHHHHh----CCCEEEEEECChhHHHHHHHHHhcCCCceEe
Confidence 99999997432211110111 112467777776654 4599999999999999999987665443332
Q ss_pred HHH---HHHHHHhhc-------cCCC------------CcceeEEecCCCCCccch-hhhh-hhhcc--CCCCceEEEEc
Q 000967 852 AMA---VVEEHSEDF-------RLDP------------LLNIHLHHNLTEILPMVA-NCAT-ELSQN--EQHFPGCSEKA 905 (1207)
Q Consensus 852 ~l~---~~~e~~~~f-------r~D~------------~~~lh~~~Nl~dwnpa~d-~QA~-R~~ri--GQ~~~v~vyRl 905 (1207)
..+ ..+.....+ ..+. -....+.|+- +|||++| .||+ ||||+ ||+++|.||||
T Consensus 155 lDG~~~~~~~k~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~Ds-dwNp~~d~iQa~~r~~R~~~gq~k~v~V~RL 233 (328)
T 3hgt_A 155 YDGHSIKSAAAANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDT-TVDTSQKDIQYLLQYKRERKGLERYAPIVRL 233 (328)
T ss_dssp SSSCCC-------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECST-TCCTTSHHHHHHHCCC---------CCEEEE
T ss_pred CCCCchhhhhhcccCCceEEEEECCCCCCcCcccccCCCCCEEEEECC-CCCCCChHHHHHHHHhhhccCCCCcceEEEE
Confidence 221 111111000 0000 0111333333 6999999 8999 99999 78999999999
Q ss_pred ccCCcccccchhHhhh
Q 000967 906 FKIHSIETCDENARKC 921 (1207)
Q Consensus 906 ~t~~tiee~~~~~~k~ 921 (1207)
++.+||||.+.+..|.
T Consensus 234 vt~~TiEh~~l~~~~~ 249 (328)
T 3hgt_A 234 VAINSIDHCRLFFGKK 249 (328)
T ss_dssp EETTSHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHccCC
Confidence 9999999999988775
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.76 E-value=1.6e-17 Score=207.80 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=91.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|||+|. +|+.||.+++.++++...+++..++|....... .......++|+|+||+.|.+.+..
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~~~~~~Iiv~Tp~~L~~~l~~-------- 128 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVP-----VEQIVENNDIIILTPQILVNNLKK-------- 128 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSC-----HHHHHHTCSEEEECHHHHHHHHHT--------
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCcccccc-----HHHhccCCCEEEECHHHHHHHHhc--------
Confidence 579999997 899999999999986557899999987543211 112234689999999999887642
Q ss_pred hhhhhhcccCCCccccc-cccccceeeccCccccCChhHHHHHHHHHh---------ccCeEEEEeccCCCCC-------
Q 000967 578 RRFMRFQKRYPVIPTLL-TRIFWWRICLDEAQMVESNAAAATEMALRL---------YAKHRWCITGTPIQRK------- 640 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L-~~i~w~rVILDEAH~IKN~~Sk~~kal~~L---------~a~~RwlLTGTPIqN~------- 640 (1207)
..+ ..-.|.+||+||||++.+..+....+...+ ...++++|||||..++
T Consensus 129 --------------~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~ 194 (696)
T 2ykg_A 129 --------------GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEA 194 (696)
T ss_dssp --------------TSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHH
T ss_pred --------------CcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHH
Confidence 112 344689999999999987764333332222 3478999999999543
Q ss_pred hhhhHhhhhccCCC
Q 000967 641 LDDLYGLLRFLKSS 654 (1207)
Q Consensus 641 l~DL~sLL~FL~p~ 654 (1207)
+.+++.++..++..
T Consensus 195 ~~~i~~~~~~l~~~ 208 (696)
T 2ykg_A 195 LDYICKLCASLDAS 208 (696)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCc
Confidence 45566666655543
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.70 E-value=1.4e-16 Score=195.90 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=64.5
Q ss_pred CCcEEEEeC-CchHHHHH-HHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 498 TGATLIVCP-APILAQWD-AEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 498 ~~~tLIV~P-~SLl~QW~-~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
.+++||||| .+|+.||. +++..|.. .+..+.+.. ....++|+|+||+.|........
T Consensus 235 ~~~vlil~P~~~L~~Q~~~~~~~~~~~----~~~~~~~~~-------------~~~~~~I~v~T~~~l~~~~~~~~---- 293 (590)
T 3h1t_A 235 KPRILFLADRNVLVDDPKDKTFTPFGD----ARHKIEGGK-------------VVKSREIYFAIYQSIASDERRPG---- 293 (590)
T ss_dssp CCCEEEEEC-----------CCTTTCS----SEEECCC---------------CCSSCSEEEEEGGGC------CC----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcch----hhhhhhccC-------------CCCCCcEEEEEhhhhcccccccc----
Confidence 468999999 57889999 88887753 233333221 12457999999999987532100
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL 648 (1207)
....+..-.|++||+||||++.+.. +.....+..+...++++|||||..+...+++.++
T Consensus 294 --------------~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f 353 (590)
T 3h1t_A 294 --------------LYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYF 353 (590)
T ss_dssp --------------GGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHS
T ss_pred --------------ccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHc
Confidence 0012334568999999999998764 3344555567788999999999998887776665
No 16
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.69 E-value=6.7e-17 Score=180.53 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=86.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|||||. +|+.||.+++.++.......+..+.|..... .......+|+|+||+.+.+...
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~I~v~T~~~l~~~~~--------- 220 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKD--------DKYKNDAPVVVGTWQTVVKQPK--------- 220 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSST--------TCCCTTCSEEEECHHHHTTSCG---------
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcch--------hhhccCCcEEEEchHHHHhhHH---------
Confidence 479999998 6889999999999754445666655543221 1233568999999999876421
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHh-ccCeEEEEeccCCCCChhhhHhhhhccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGTPIQRKLDDLYGLLRFLKS 653 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGTPIqN~l~DL~sLL~FL~p 653 (1207)
...-.|++||+||||++.+. .....+..+ .+.++++|||||. |...+++.++.+++|
T Consensus 221 ----------------~~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 221 ----------------EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp ----------------GGGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred ----------------HHHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 11235799999999999853 344455555 6889999999995 556888888888765
No 17
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.64 E-value=6.5e-15 Score=184.19 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=84.7
Q ss_pred CcEEEEeCCc-hHHHH-HHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQW-DAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW-~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+++|||||.. |+.|| .+++.++++. .+++..++|....... ........+|+|+|++.|...+......
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~-----~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~--- 127 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKIS-----FPEVVKSCDIIISTAQILENSLLNLENG--- 127 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCC-----HHHHHHSCSEEEEEHHHHHHHTC--------
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhH-----HHhhhcCCCEEEECHHHHHHHHhccccc---
Confidence 5799999975 88999 9999999963 4999999997543211 1222367899999999999865321100
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChhH---HHHHHHHH-h-------------ccCeEEEEeccCCCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA---AATEMALR-L-------------YAKHRWCITGTPIQR 639 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S---k~~kal~~-L-------------~a~~RwlLTGTPIqN 639 (1207)
....+....|++||+||||++.+... .....+.. + +....++|||||..+
T Consensus 128 -------------~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 128 -------------EDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp ----------------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCC
T ss_pred -------------cccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEeccccccc
Confidence 00124445789999999999865331 11111111 1 446799999999997
Q ss_pred Ch-------hhhHhhhhccCC
Q 000967 640 KL-------DDLYGLLRFLKS 653 (1207)
Q Consensus 640 ~l-------~DL~sLL~FL~p 653 (1207)
+. .++..++..+++
T Consensus 195 ~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 195 GATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp SCCSHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHhhcCC
Confidence 43 344555556665
No 18
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.55 E-value=2.9e-14 Score=155.91 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=73.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCe-EEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLK-TCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~-V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+++|||||. .|+.||.+++.++ .++ +..+.|.... ..+|+|+||+.+.....
T Consensus 134 ~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~~--------------~~~i~v~T~~~l~~~~~-------- 187 (237)
T 2fz4_A 134 TPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE--------------LKPLTVSTYDSAYVNAE-------- 187 (237)
T ss_dssp SCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCBC--------------CCSEEEEEHHHHHHTHH--------
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCCC--------------cCCEEEEeHHHHHhhHH--------
Confidence 479999999 7889999999994 467 8888886432 36899999999876532
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRK 640 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~ 640 (1207)
...-.|++||+||+|++.+..- .+.+..+++.++++|||||..++
T Consensus 188 -----------------~~~~~~~llIiDEaH~l~~~~~--~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 188 -----------------KLGNRFMLLIFDEVHHLPAESY--VQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp -----------------HHTTTCSEEEEECSSCCCTTTH--HHHHHTCCCSEEEEEEESCC---
T ss_pred -----------------HhcccCCEEEEECCccCCChHH--HHHHHhccCCEEEEEecCCCCCC
Confidence 1123589999999999987542 33445568899999999998764
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.54 E-value=3e-14 Score=160.77 Aligned_cols=111 Identities=18% Similarity=0.110 Sum_probs=76.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||||. .|+.||.+++.++.....+++..++|..... .....+..++|+|+|++.+...+..
T Consensus 57 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~v~T~~~l~~~~~~-------- 122 (337)
T 2z0m_A 57 MKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYK------AQINRVRNADIVVATPGRLLDLWSK-------- 122 (337)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHH------HHHHHHTTCSEEEECHHHHHHHHHT--------
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchH------HHHhhcCCCCEEEECHHHHHHHHHc--------
Confidence 468999998 6889999999998765567888888764321 1233445689999999999875431
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhccC-eEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYAK-HRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a~-~RwlLTGTPI 637 (1207)
..+..-.|++||+||||.+.+.. ......+..+... ..+++|+||-
T Consensus 123 --------------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~ 171 (337)
T 2z0m_A 123 --------------GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIP 171 (337)
T ss_dssp --------------TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred --------------CCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCC
Confidence 01233468899999999986443 2333334444444 4556799994
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.52 E-value=3.2e-13 Score=155.89 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=75.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCC-CCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
.++|||||. .|+.||.+++.++.... .+++..+.|...... .........++|+|+|++.+...+...
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~iiv~T~~~l~~~~~~~------ 146 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK----DEEVLKKNCPHIVVGTPGRILALARNK------ 146 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHH----HHHHHHHSCCSEEEECHHHHHHHHHTT------
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHH----HHHHHhcCCCCEEEECHHHHHHHHHcC------
Confidence 479999998 68899999999987532 688988888654211 001111234799999999998754320
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChhHH--HHHHHH-Hhc-cCeEEEEeccCCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA--ATEMAL-RLY-AKHRWCITGTPIQ 638 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk--~~kal~-~L~-a~~RwlLTGTPIq 638 (1207)
.+..-.|++||+||||.+.+.... ....+. .+. ....+++||||-.
T Consensus 147 ----------------~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 196 (391)
T 1xti_A 147 ----------------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 196 (391)
T ss_dssp ----------------SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCS
T ss_pred ----------------CccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCH
Confidence 122346889999999999764222 222222 222 4568999999854
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.44 E-value=2.5e-12 Score=149.30 Aligned_cols=112 Identities=15% Similarity=0.043 Sum_probs=75.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||||. .|+.||.+++.++.....+++..+.|...... ........++|+|+|++.+...+...
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~Ivv~T~~~l~~~~~~~------- 157 (400)
T 1s2m_A 90 IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRD-----DILRLNETVHILVGTPGRVLDLASRK------- 157 (400)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHH-----HHHHTTSCCSEEEECHHHHHHHHHTT-------
T ss_pred ccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHH-----HHHHhcCCCCEEEEchHHHHHHHHhC-------
Confidence 479999998 57899999999998755688888887654210 01122356899999999987654310
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHHHHH-h-ccCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALR-L-YAKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~-L-~a~~RwlLTGTPI 637 (1207)
.+..-.+++||+||||++.+.. ......+.. + .....+++||||-
T Consensus 158 ---------------~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~ 205 (400)
T 1s2m_A 158 ---------------VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP 205 (400)
T ss_dssp ---------------CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred ---------------CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCC
Confidence 1223457899999999887653 122222222 2 3457899999973
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.37 E-value=2.6e-11 Score=139.56 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=74.0
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||||.. |+.||.+++.++.....+.+..+.|..... .....++|+|+|++.+...+..
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~iiv~T~~~l~~~~~~-------- 138 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK---------NKQINAQVIVGTPGTVLDLMRR-------- 138 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT---------TSCBCCSEEEECHHHHHHHHHT--------
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh---------hccCCCCEEEEcHHHHHHHHHc--------
Confidence 5799999986 889999999998765567777777654321 1234689999999999875431
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHH-hc-cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALR-LY-AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~-L~-a~~RwlLTGTPI 637 (1207)
..+..-.|++||+||||.+.+.. ......+.. ++ ....+++||||-
T Consensus 139 --------------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 139 --------------KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp --------------TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred --------------CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 11223457899999999886422 222222222 32 356899999984
No 23
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.35 E-value=2.2e-12 Score=146.99 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=79.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||||. .|..||.+++.++.....+++..+.|..... .....+...+|+|+||+.+...+..
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~iiv~T~~~l~~~~~~-------- 140 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIY------PQIKALKNANIVVGTPGRILDHINR-------- 140 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHH------HHHHHHHTCSEEEECHHHHHHHHHT--------
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchH------HHHhhcCCCCEEEecHHHHHHHHHc--------
Confidence 479999998 5779999999999865567888888765321 1233445789999999999876532
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHh-ccCeEEEEeccCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-YAKHRWCITGTPIQR 639 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L-~a~~RwlLTGTPIqN 639 (1207)
..+..-.|++||+||||.+.+.. ......+..+ .....+++||||..+
T Consensus 141 --------------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 191 (367)
T 1hv8_A 141 --------------GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPRE 191 (367)
T ss_dssp --------------TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHH
T ss_pred --------------CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHH
Confidence 01223467899999999987654 2223333333 356678999999654
No 24
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.33 E-value=9.2e-12 Score=131.42 Aligned_cols=117 Identities=20% Similarity=0.113 Sum_probs=78.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||||. .++.||.+++.++.+ .+++..++|...... ........++|+|+|++.+...+...
T Consensus 73 ~~~lil~P~~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~i~v~T~~~l~~~~~~~------- 138 (207)
T 2gxq_A 73 PRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGK-----QKEALLRGADAVVATPGRALDYLRQG------- 138 (207)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCT--TSCEEEECSSSCSHH-----HHHHHHHCCSEEEECHHHHHHHHHHT-------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHhh--cceEEEEECCCChHH-----HHHHhhCCCCEEEECHHHHHHHHHcC-------
Confidence 579999999 788999999999986 588888887654211 01122346899999999987754310
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHhc-cCeEEEEeccCCCCChhhhH
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPIQRKLDDLY 645 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPIqN~l~DL~ 645 (1207)
.+..-.+++||+||||++.+. .......+..++ ....+++|+||- +.+.++.
T Consensus 139 ---------------~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~ 193 (207)
T 2gxq_A 139 ---------------VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP-SWAKRLA 193 (207)
T ss_dssp ---------------SSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC-HHHHHHH
T ss_pred ---------------CcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC-HHHHHHH
Confidence 122235789999999987433 233334444444 456899999984 3344443
No 25
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.32 E-value=5.7e-12 Score=133.39 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=67.0
Q ss_pred CcEEEEeCC-chHHH-HHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPA-PILAQ-WDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~Q-W~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+++|||||. .++.| |.+++.++... .+++..+.|....... .......++|+|+||+.+...+.......
T Consensus 83 ~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~~~~~-- 154 (216)
T 3b6e_A 83 GKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKIS-----FPEVVKSCDIIISTAQILENSLLNLENGE-- 154 (216)
T ss_dssp CCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCC-----HHHHHHHCSEEEEEHHHHHHHHHC-------
T ss_pred CcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchh-----HHhhccCCCEEEECHHHHHHHHhccCccc--
Confidence 579999999 56788 99999998753 6888888886543211 11223468999999999987653211000
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChhH--HHH-HHHHHh--------------ccCeEEEEecc
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA--AAT-EMALRL--------------YAKHRWCITGT 635 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S--k~~-kal~~L--------------~a~~RwlLTGT 635 (1207)
...+..-.|++||+||||++..... ... ..+... ...+.++||||
T Consensus 155 --------------~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 155 --------------DAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp ----------------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred --------------ccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 0012234688999999999864321 111 111111 34578999998
No 26
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.32 E-value=1.2e-11 Score=132.37 Aligned_cols=117 Identities=16% Similarity=0.134 Sum_probs=76.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCC-CCeEEEEcCCCccccccccchhhhhc--cCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
..+|||||. .|..||.+++.++.... .+++..++|...... ....+ ...+|+|+|++.+...+...
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~------~~~~~~~~~~~i~v~T~~~l~~~~~~~---- 152 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK------DEEVLKKNCPHIVVGTPGRILALARNK---- 152 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHH------HHHHHHHSCCSEEEECHHHHHHHHHTT----
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHH------HHHHHhcCCCCEEEeCHHHHHHHHHhC----
Confidence 379999998 68899999999987532 688988888643211 11112 34699999999998754320
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCccccCCh-h--HHHHHHHHHhc-cCeEEEEeccCCCCChhhh
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-A--AAATEMALRLY-AKHRWCITGTPIQRKLDDL 644 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-~--Sk~~kal~~L~-a~~RwlLTGTPIqN~l~DL 644 (1207)
.+..-.+++||+||||++-.. . ......+..++ ....+++||||-. .+.++
T Consensus 153 ------------------~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~ 207 (220)
T 1t6n_A 153 ------------------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK-EIRPV 207 (220)
T ss_dssp ------------------SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCT-TTHHH
T ss_pred ------------------CCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCH-HHHHH
Confidence 122335789999999988542 1 22222333333 4578999999954 44443
No 27
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.32 E-value=2.3e-11 Score=141.44 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=74.9
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||||.. |..||.+++.++.....+.+..+.|...... .........++|+|+|++.|...+..
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~iiv~T~~~l~~~l~~-------- 176 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA----EVQKLQMEAPHIIVGTPGRVFDMLNR-------- 176 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH----HHHHHTTTCCSEEEECHHHHHHHHHH--------
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH----HHHHHhcCCCCEEEECHHHHHHHHHc--------
Confidence 4699999985 7899999999987544566766666543210 00111225689999999998876532
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHh-ccCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-YAKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L-~a~~RwlLTGTPI 637 (1207)
..+..-.+.+||+||||.+.+.. ......+..+ .....+++||||-
T Consensus 177 --------------~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 177 --------------RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp --------------TSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred --------------CCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 01223457899999999875433 3344444445 3456789999984
No 28
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.31 E-value=8e-12 Score=144.14 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=78.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+++|||||. .|+.||.+++.++.....+++..+.|..... .....+..++|+|+|++.+...+..
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~i~v~T~~~l~~~~~~-------- 155 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV------EDAEGLRDAQIVVGTPGRVFDNIQR-------- 155 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHH------HHHHHHHHCSEEEECHHHHHHHHHT--------
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchH------HHHhhcCCCCEEEECHHHHHHHHHh--------
Confidence 579999998 6889999999998875578888888865421 1223344789999999998775432
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHhc-cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
..+....|++||+||||.+.+. .......+..+. ....+++||||-
T Consensus 156 --------------~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 204 (394)
T 1fuu_A 156 --------------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 204 (394)
T ss_dssp --------------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred --------------CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecC
Confidence 0123346889999999997433 233344444443 466899999985
No 29
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.28 E-value=4.2e-11 Score=129.44 Aligned_cols=111 Identities=21% Similarity=0.157 Sum_probs=77.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCC-CCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+|||||. .|..||.+++.++.... .+++.++.|..... .....+..++|+|+|++.+...+...
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~Iiv~Tp~~l~~~~~~~------ 160 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLS------QDKTRLKKCHIAVGSPGRIKQLIELD------ 160 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHH------HHHHHTTSCSEEEECHHHHHHHHHTT------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHH------HHHHhccCCCEEEECHHHHHHHHhcC------
Confidence 479999998 68899999999987432 68888888865421 12233457899999999998754310
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCCh---hHHHHHHHHHhc-cCeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN---AAAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~---~Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
.+..-.+++||+||||++-+. .......+..++ ....+++|||+-
T Consensus 161 ----------------~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 161 ----------------YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP 209 (230)
T ss_dssp ----------------SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred ----------------CcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccC
Confidence 122236789999999998433 344444555565 456899999963
No 30
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.27 E-value=4.8e-11 Score=127.81 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=73.6
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||||. .+..||.+++.++.....+++..++|...... ....+..++|+|+|++.+...+...
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~iiv~Tp~~l~~~~~~~------- 149 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE------DAEGLRDAQIVVGTPGRVFDNIQRR------- 149 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------------CTTCSEEEECHHHHHHHHHTT-------
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHH------HHhcCCCCCEEEECHHHHHHHHHhC-------
Confidence 479999998 67899999999988655788888888644221 2233445899999999987654320
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
.+..-.+.+||+||||++.... ......+..++ ....+++||||-
T Consensus 150 ---------------~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 150 ---------------RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp ---------------SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred ---------------CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecC
Confidence 1222357899999999875432 33444444453 456889999984
No 31
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.26 E-value=2e-11 Score=132.19 Aligned_cols=117 Identities=13% Similarity=0.158 Sum_probs=80.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||||. .|..||.+++.++.....+++..++|..... .....+..++|+|+|++.+...+...
T Consensus 98 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~iiv~Tp~~l~~~l~~~------- 164 (236)
T 2pl3_A 98 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLK------HEAERINNINILVCTPGRLLQHMDET------- 164 (236)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CH------HHHHHHTTCSEEEECHHHHHHHHHHC-------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHH------HHHHhCCCCCEEEECHHHHHHHHHhc-------
Confidence 469999998 6889999999999865568888888865432 12234467899999999997654310
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccCCCCChhh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPIQRKLDD 643 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPIqN~l~D 643 (1207)
..+..-.+.+||+||||++.+.. ......+..++ ....+++|||+-. .+.+
T Consensus 165 --------------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~-~~~~ 218 (236)
T 2pl3_A 165 --------------VSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTK-SVKD 218 (236)
T ss_dssp --------------SSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCH-HHHH
T ss_pred --------------CCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH-HHHH
Confidence 01223467899999999886432 34444455554 4558999999743 3444
No 32
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.23 E-value=8.6e-11 Score=124.00 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=75.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCC-CCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+|||||. .+..||.+++.++.... .+++..+.|....... .......++|+|+|++.+...+...
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~------ 140 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD-----IMRLDDTVHVVIATPGRILDLIKKG------ 140 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHH-----HHHTTSCCSEEEECHHHHHHHHHTT------
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHH-----HHhcCCCCCEEEeCHHHHHHHHHcC------
Confidence 469999998 57799999999887532 6788888876542110 1112246899999999997654310
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
.+..-.+.+||+||||.+.... ......+..++ ....+++|||+-
T Consensus 141 ----------------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 141 ----------------VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp ----------------CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred ----------------CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 1122357889999999876532 23333444454 567899999984
No 33
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.22 E-value=6.9e-11 Score=126.51 Aligned_cols=118 Identities=16% Similarity=0.123 Sum_probs=76.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCC----CCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCC
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPG----SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g----~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1207)
..+|||||. .+..||.+++.++.... .+++..+.|....... .......++|+|+|++.+...+...
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~Iiv~Tp~~l~~~l~~~--- 144 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA-----LEKLNVQPHIVIGTPGRINDFIREQ--- 144 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT-----TCCCSSCCSEEEECHHHHHHHHHTT---
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH-----HHHcCCCCCEEEeCHHHHHHHHHcC---
Confidence 469999998 68899999999887532 4677777775432110 0011136799999999998754310
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccCCCCChhhh
Q 000967 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPIQRKLDDL 644 (1207)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPIqN~l~DL 644 (1207)
.+..-.+.+||+||||.+.+.. ......+..++ ....+++|||| .+.+.++
T Consensus 145 -------------------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 145 -------------------ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp -------------------CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred -------------------CCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 1222356789999999986432 33444444554 45689999997 3444443
No 34
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.19 E-value=8.6e-11 Score=136.92 Aligned_cols=113 Identities=16% Similarity=0.055 Sum_probs=76.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.++|||||.. |..||.+++.++.....+++..+.|....... ........+|+|+|++.+...+..
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~ivv~Tp~~l~~~l~~-------- 172 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGED-----IRKLDYGQHVVAGTPGRVFDMIRR-------- 172 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHH-----HHHHHHCCSEEEECHHHHHHHHHT--------
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHH-----HHHhhcCCCEEEcCHHHHHHHHHh--------
Confidence 5799999985 88999999999886556788887776432110 111124578999999998765432
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHh-ccCeEEEEeccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL-YAKHRWCITGTPIQ 638 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L-~a~~RwlLTGTPIq 638 (1207)
..+..-.|++||+||||++.+.. ......+..+ .....+++||||-.
T Consensus 173 --------------~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 222 (410)
T 2j0s_A 173 --------------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH 222 (410)
T ss_dssp --------------TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred --------------CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCH
Confidence 01233468899999999987654 2222333333 34678999999843
No 35
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.14 E-value=1.9e-10 Score=125.87 Aligned_cols=118 Identities=16% Similarity=0.208 Sum_probs=76.9
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||||. .|..||.+++.++.....+++..+.|...... ........++|+|+|++.+...+...
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~Ivv~Tp~~l~~~l~~~------- 168 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHS-----QIREVQMGCHLLVATPGRLVDFIEKN------- 168 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHH-----HHHHHSSCCSEEEECHHHHHHHHHTT-------
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH-----HHHHhCCCCCEEEECHHHHHHHHHcC-------
Confidence 479999998 68899999999987655678887777643211 01111246799999999998754320
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHh--c---cCeEEEEeccCCCCChhhh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRL--Y---AKHRWCITGTPIQRKLDDL 644 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L--~---a~~RwlLTGTPIqN~l~DL 644 (1207)
.+.--.+.+||+||||++-+. .......+..+ . ....+++||||- +.+.++
T Consensus 169 ---------------~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~-~~~~~~ 226 (253)
T 1wrb_A 169 ---------------KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP-KEIQKL 226 (253)
T ss_dssp ---------------SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC-HHHHHH
T ss_pred ---------------CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC-HHHHHH
Confidence 112234678999999987533 23333444432 2 345899999974 334443
No 36
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.11 E-value=5.7e-10 Score=121.21 Aligned_cols=113 Identities=17% Similarity=0.090 Sum_probs=72.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||+|. .+..||.+++.++.....+++..+.|....... ........++|+|+|++.+...+...
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~l~~~~~~Ilv~Tp~~l~~~l~~~------- 167 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE----MQKLQAEAPHIVVGTPGRVFDMLNRR------- 167 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-----------------CCCSEEEECHHHHHHHHHTT-------
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH----HHHHhcCCCCEEEECHHHHHHHHHhC-------
Confidence 479999998 588999999999886546777777765432110 01111133799999999987654310
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccC--ChhHHHHHHHHHhc-cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE--SNAAAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK--N~~Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
.+..-.+.+||+||||++- +........+..++ ....+++|||+-
T Consensus 168 ---------------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 168 ---------------YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp ---------------SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred ---------------CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 1122347899999999873 33344555555664 356789999984
No 37
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.11 E-value=1.6e-10 Score=126.84 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=75.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||||. .|..||.+++.++...-.+++..+.|...... ........++|+|+|++.+...+....
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~I~v~Tp~~l~~~l~~~~------ 180 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMS-----QSLALAKKPHIIIATPGRLIDHLENTK------ 180 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHH-----HHHHHHTCCSEEEECHHHHHHHHHHST------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHH-----HHHHhcCCCCEEEECHHHHHHHHHcCC------
Confidence 369999998 57899999999986543578888877543210 011223568999999999977543100
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
.+..-.+.+||+||||++.+.. ....+.+..++ ....+++|||+-
T Consensus 181 ---------------~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 181 ---------------GFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp ---------------TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred ---------------CcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 1122357899999999876532 33344444454 467899999984
No 38
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.09 E-value=2.6e-10 Score=147.87 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=68.7
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhc--cCCcEEEEehHHHhhhcccCCCCcc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
.++|||||. .|..||.++|.+|.+. . ++.+..... ....+ ...+|+|+|+++|...+....
T Consensus 331 ~rvLvlvpr~eL~~Q~~~~f~~f~~~-~----v~~~~s~~~-------l~~~L~~~~~~IiVtTiqkl~~~l~~~~---- 394 (1038)
T 2w00_A 331 DKVFFVVDRKDLDYQTMKEYQRFSPD-S----VNGSENTAG-------LKRNLDKDDNKIIVTTIQKLNNLMKAES---- 394 (1038)
T ss_dssp CEEEEEECGGGCCHHHHHHHHTTSTT-C----SSSSCCCHH-------HHHHHHCSSCCEEEEEHHHHHHHHHHCC----
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhccc-c----cccccCHHH-------HHHHhcCCCCCEEEEEHHHHHHHHhccc----
Confidence 479999994 6889999999998752 1 112211110 11112 458999999999987542100
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHH-HHhccCeEEEEeccCCCC
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal-~~L~a~~RwlLTGTPIqN 639 (1207)
.. ..+. .+.+||+||||+.... ..++.+ ..++...++++||||+..
T Consensus 395 ----------~~----~~~~--~~~lvIiDEAHrs~~~--~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 395 ----------DL----PVYN--QQVVFIFDECHRSQFG--EAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp ----------CC----GGGG--SCEEEEEESCCTTHHH--HHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred ----------ch----hccc--cccEEEEEccchhcch--HHHHHHHHhCCcccEEEEeCCcccc
Confidence 00 0111 5789999999997532 223333 456778899999999964
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.02 E-value=9.2e-10 Score=144.98 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=78.2
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||||.. |..||.+++.+++..-.+++..++|....... ............||||+|++.+...+
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~-~~~~~~l~~g~~dIvV~T~~ll~~~~---------- 721 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ-TQILAEVAEGKIDILIGTHKLLQSDV---------- 721 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHH-HHHHHHHHTTCCSEEEECTHHHHSCC----------
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHhCCc----------
Confidence 4799999986 67899999998886445788888875432100 00001111246899999999887542
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhcc-CeEEEEeccCCCCChhh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLYA-KHRWCITGTPIQRKLDD 643 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a-~~RwlLTGTPIqN~l~D 643 (1207)
.--.|++||+||+|++. ......+..+.. .+.++|||||+.+.+..
T Consensus 722 -----------------~~~~l~lvIiDEaH~~g---~~~~~~l~~l~~~~~vl~lSATp~p~~l~~ 768 (1151)
T 2eyq_A 722 -----------------KFKDLGLLIVDEEHRFG---VRHKERIKAMRANVDILTLTATPIPRTLNM 768 (1151)
T ss_dssp -----------------CCSSEEEEEEESGGGSC---HHHHHHHHHHHTTSEEEEEESSCCCHHHHH
T ss_pred -----------------cccccceEEEechHhcC---hHHHHHHHHhcCCCCEEEEcCCCChhhHHH
Confidence 12357899999999974 334555666654 57899999999876543
No 40
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.96 E-value=4.9e-09 Score=113.90 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=72.8
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||+|.. |..||.+++.++.....+++..++|....... ........++|+|+|++.+...+....
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~I~v~Tp~~l~~~l~~~~------ 168 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK----FGPKSSKKFDILVTTPNRLIYLLKQDP------ 168 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT----TSTTSCCCCCEEEECHHHHHHHHHSSS------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH----hhhhhcCCCCEEEECHHHHHHHHHhCC------
Confidence 3699999984 78999999999987556777776654321100 011223567999999999977553210
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh-----hHHHHHHHHHh--ccCeEEEEeccC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN-----AAAATEMALRL--YAKHRWCITGTP 636 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~-----~Sk~~kal~~L--~a~~RwlLTGTP 636 (1207)
..+.--.+.+||+||||.+-.. .......+..+ .....+++|+|+
T Consensus 169 --------------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 169 --------------PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp --------------CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred --------------CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 0122234678999999998532 22233333333 245689999998
No 41
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.96 E-value=7.8e-09 Score=119.85 Aligned_cols=110 Identities=15% Similarity=0.041 Sum_probs=71.5
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCC-CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+|||+|.. |..||.+++.++... +.+++....|..... .......+|+|+|++.+...+...
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ivv~T~~~l~~~~~~~------ 161 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE--------RGQKISEQIVIGTPGTVLDWCSKL------ 161 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC--------TTCCCCCSEEEECHHHHHHHHTTS------
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh--------hhhcCCCCEEEECchHHHHHHHhc------
Confidence 4799999986 778998888877642 256777766654321 112345789999999997754321
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCC--hhHHHHHHHHH-hc-cCeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMALR-LY-AKHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN--~~Sk~~kal~~-L~-a~~RwlLTGTPI 637 (1207)
..+..-.+++||+||||.+-. ........+.. +. ....+++|+||-
T Consensus 162 ---------------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 211 (412)
T 3fht_A 162 ---------------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 211 (412)
T ss_dssp ---------------CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred ---------------CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecC
Confidence 012224688999999998743 22233333333 33 356889999984
No 42
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.94 E-value=6.3e-09 Score=111.83 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=71.5
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||+|.. |..||.+++.++.. ..+++..+.|....... .......++|+|+|++.+...+...
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~iiv~Tp~~l~~~~~~~------- 161 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQ-----IEDISKGVDIIIATPGRLNDLQMNN------- 161 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCC-TTCCEEEECC------C-----HHHHHSCCSEEEECHHHHHHHHHTT-------
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhcc-cCceEEEEECCCChHHH-----HHHhcCCCCEEEECHHHHHHHHHcC-------
Confidence 5689999985 77999999999874 36777777765432110 1122345899999999997754210
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
.+.--.+.+||+||||++-+.. ......+..++ ....+++|+|+-
T Consensus 162 ---------------~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 162 ---------------SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWP 209 (228)
T ss_dssp ---------------CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred ---------------CcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCC
Confidence 1222346899999999875432 33444445554 456788999953
No 43
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.92 E-value=3.7e-09 Score=123.79 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=78.3
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhc--cCCcEEEEehHHHhhhcccCCCCcc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
+.+|||+|. .|+.||.+++.++.. ..+++..++|....... ......+ ..++|+|+|++.+...+..
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~---~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~------ 134 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEK---EKFEKSFEEDDYHILVFSTQFVSKNREK------ 134 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHH---HHHHHHHHHTCCSEEEEEHHHHHHCHHH------
T ss_pred CEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhH---HHHHHHhhcCCCCEEEECHHHHHHHHHH------
Confidence 479999998 588999999999876 57899999986542100 0011222 3489999999999765421
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCC-------------hhHH-HHHHHHHh------------ccCeE
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES-------------NAAA-ATEMALRL------------YAKHR 629 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN-------------~~Sk-~~kal~~L------------~a~~R 629 (1207)
+..-.+.+||+||||.+.. .... ....+..+ .....
T Consensus 135 ------------------~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 196 (414)
T 3oiy_A 135 ------------------LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGIL 196 (414)
T ss_dssp ------------------HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEE
T ss_pred ------------------hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceE
Confidence 2233688999999998632 1122 23333334 44578
Q ss_pred EEEeccCCCCChh
Q 000967 630 WCITGTPIQRKLD 642 (1207)
Q Consensus 630 wlLTGTPIqN~l~ 642 (1207)
+++|+||....+.
T Consensus 197 i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 197 VVSSATAKPRGIR 209 (414)
T ss_dssp EESSCCSSCCSST
T ss_pred EEEecCCCcchhH
Confidence 8999998777654
No 44
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.89 E-value=5.6e-09 Score=123.70 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=75.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||||. .|..||.+++.++.....+++..++|...... ........++|+|+|++.|...+...
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~-----~~~~l~~~~~Ivv~Tp~~l~~~l~~~------- 197 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRH-----QNECITRGCHVVIATPGRLLDFVDRT------- 197 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHH-----HHHHHTTCCSEEEECHHHHHHHHHTT-------
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHH-----HHHHhhcCCCEEEEChHHHHHHHHhC-------
Confidence 479999998 48899999999998755677777776543211 01112246899999999997754320
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHh---ccCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRL---YAKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L---~a~~RwlLTGTPI 637 (1207)
.+.--.+.+||+||||++-+.. ....+.+..+ .....+++||||-
T Consensus 198 ---------------~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 198 ---------------FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp ---------------SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCC
T ss_pred ---------------CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCC
Confidence 1223357889999999976543 2333333333 3457899999973
No 45
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.87 E-value=4.8e-09 Score=126.86 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=67.4
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||||.. |+.||.+++.++.....+.+....+.... ......++|+|+|++.+...+..
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~Ivv~T~~~l~~~l~~-------- 252 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP---------KGAKIDAQIVIGTPGTVMDLMKR-------- 252 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-------------------CCCCSEEEECHHHHHHHHHT--------
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc---------ccccCCCCEEEECHHHHHHHHHc--------
Confidence 4799999986 88999999999886434444443332211 11223689999999998775432
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh---HHHHHHHHHhc-cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA---AAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~---Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
..+..-.+++||+||+|.+.... .........+. ....+++|+||-
T Consensus 253 --------------~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 253 --------------RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS 302 (508)
T ss_dssp --------------TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCS
T ss_pred --------------CCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCC
Confidence 01223457899999999986422 22223333344 345699999984
No 46
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.84 E-value=2.3e-09 Score=135.56 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=73.7
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+||++|.. |..||.+++.+++.+-++++..++|........ ...........+|+|+|++.+...+
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~-~~~~~l~~g~~~IvVgT~~ll~~~~---------- 486 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKE-KIKSGLRNGQIDVVIGTHALIQEDV---------- 486 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHH-HHHHHHHSSCCCEEEECTTHHHHCC----------
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHH-HHHHHHhcCCCCEEEECHHHHhhhh----------
Confidence 3689999984 678999999999865568999999875431100 0001112245899999999886532
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHH-hccCeEEEEeccCCCCChh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALR-LYAKHRWCITGTPIQRKLD 642 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~-L~a~~RwlLTGTPIqN~l~ 642 (1207)
.--.+.+||+||+|++.... . ..+.. ....+.+++||||+.+.+.
T Consensus 487 -----------------~~~~l~lVVIDEaHr~g~~q--r-~~l~~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 487 -----------------HFKNLGLVIIDEQHRFGVKQ--R-EALMNKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp -----------------CCSCCCEEEEESCCCC--------CCCCSSSSCCCEEEEESSCCCHHHH
T ss_pred -----------------hccCCceEEecccchhhHHH--H-HHHHHhCCCCCEEEEeCCCCHHHHH
Confidence 12356899999999974221 1 11111 1346799999999876544
No 47
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.81 E-value=1.5e-08 Score=117.91 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=74.0
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||+|. .|+.||.+++.++.....+++..++|....... ........+|+|+|++.|...+...
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~I~v~Tp~~l~~~l~~~------- 169 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ-----IRDLERGCHLLVATPGRLVDMMERG------- 169 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHH-----HHHHTTCCSEEEECHHHHHHHHHTT-------
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHH-----HHHhhCCCCEEEEChHHHHHHHHcC-------
Confidence 469999998 688999999999876557888888876432110 1111245799999999998765320
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh-HHHHHHHHH---hc---cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AAATEMALR---LY---AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk~~kal~~---L~---a~~RwlLTGTPI 637 (1207)
.+..-.+.+||+||||++.... ......+.. +. ....+++|+||-
T Consensus 170 ---------------~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 170 ---------------KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 221 (417)
T ss_dssp ---------------SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCC
T ss_pred ---------------CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCC
Confidence 1223357899999999875432 222222222 11 346789999984
No 48
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.6e-08 Score=131.50 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=71.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+||++|. .|..||.+++.+++. ++.+++|.... ....+|+|+|++.|.+.+...
T Consensus 130 ~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~------------~~~~~IvV~Tpe~L~~~L~~~------- 186 (1010)
T 2xgj_A 130 QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI------------NPDAGCLVMTTEILRSMLYRG------- 186 (1010)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEE------------CTTCSEEEEEHHHHHHHHHHT-------
T ss_pred CeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCcc------------CCCCCEEEEcHHHHHHHHHcC-------
Confidence 479999998 788999999999874 67778885432 135789999999998754310
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh-HH-HHHHHHHhc-cCeEEEEeccC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AA-ATEMALRLY-AKHRWCITGTP 636 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk-~~kal~~L~-a~~RwlLTGTP 636 (1207)
...--.+.+||+||+|++.+.. .. ....+..++ ....++||+|+
T Consensus 187 ---------------~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi 233 (1010)
T 2xgj_A 187 ---------------SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATI 233 (1010)
T ss_dssp ---------------CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred ---------------cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCC
Confidence 1222367889999999997753 33 333444454 46789999994
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.76 E-value=2e-08 Score=109.24 Aligned_cols=111 Identities=15% Similarity=0.065 Sum_probs=72.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||||.. |..||.+++.++.....+++..+.|...... ........++|+|+|++.+...+...
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~I~v~Tp~~l~~~l~~~------- 170 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP-----QIRDLERGVEICIATPGRLIDFLECG------- 170 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHH-----HHHHHHHCCSEEEECHHHHHHHHHHT-------
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH-----HHHHhcCCCCEEEECHHHHHHHHHcC-------
Confidence 4689999985 7789999998876544678888777543211 01111235899999999997654310
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTP 636 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTP 636 (1207)
.+.--.+.+||+||||++-... ......+..++ ....+++|+|+
T Consensus 171 ---------------~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 171 ---------------KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp ---------------SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred ---------------CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 1122346789999999875432 23333334443 45688999996
No 50
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.75 E-value=3.4e-08 Score=109.10 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=74.5
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+|||+|. .|..||.+++.++.......+..+.|...... .........+|+|+|.+.+...+....
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~Iiv~Tp~~l~~~~~~~~------ 195 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSA-----EAQKLGNGINIIVATPGRLLDHMQNTP------ 195 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHH-----HHHHHHHCCSEEEECHHHHHHHHHHCT------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHH-----HHHHhcCCCCEEEEcHHHHHHHHHccC------
Confidence 468999998 58899999999988765677777777543211 011112358999999999876542100
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHhc-cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
.+.--.+.+||+||||++-.. .......+..++ ....+++|+||-
T Consensus 196 ---------------~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 196 ---------------GFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp ---------------TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred ---------------CcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 011224678999999986543 233344444554 356799999975
No 51
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.75 E-value=1.8e-08 Score=122.36 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=82.0
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||+|. +|+.||.+++.++ .+++..++|....... ...........++|+++|++.+.....
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~-~~~~~~~~~~~~~ilv~Tpe~l~~~~~--------- 131 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQ-LEVMTGCRTGQIRLLYIAPERLMLDNF--------- 131 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHH-HHHHHHHHHTCCSEEEECHHHHTSTTH---------
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHhChHH---------
Confidence 468999998 6889999999986 4677777775432100 000011123468999999999864311
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhhc
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLRF 650 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~F 650 (1207)
...+....+.+||+||||.+.... .........++....+++||||..+...|+...+.+
T Consensus 132 -------------~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~ 198 (523)
T 1oyw_A 132 -------------LEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGL 198 (523)
T ss_dssp -------------HHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred -------------HHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCC
Confidence 012344678899999999986432 112223334456789999999988777777766654
No 52
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.68 E-value=1.5e-07 Score=112.33 Aligned_cols=110 Identities=15% Similarity=0.042 Sum_probs=68.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCC-CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
..+|||+|.. |..||.+++.++... +.+.+....|..... .......+|+|+|++.+...+...
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Ivv~Tp~~l~~~l~~~------ 228 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE--------RGQKISEQIVIGTPGTVLDWCSKL------ 228 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC--------TTCCCCCSEEEECHHHHHHHHTTS------
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc--------ccccCCCCEEEECchHHHHHHHhc------
Confidence 3699999985 778987776664321 256776666654321 111235689999999997765321
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHH-hc-cCeEEEEeccCC
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALR-LY-AKHRWCITGTPI 637 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~-L~-a~~RwlLTGTPI 637 (1207)
..+.--.+.+||+||||++-.. .......+.. +. ....+++|+||-
T Consensus 229 ---------------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 278 (479)
T 3fmp_B 229 ---------------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (479)
T ss_dssp ---------------CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCC
T ss_pred ---------------CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCC
Confidence 0122246789999999987532 2222223332 32 356899999984
No 53
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.68 E-value=9.8e-08 Score=119.83 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=78.5
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||+|.- +..||.++++++.. -++++..+.|..... ...+...+|+|+|++.+...+...
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~--------~~~~~~~~Iiv~Tpe~l~~~l~~~------- 132 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESR--------DEHLGDCDIIVTTSEKADSLIRNR------- 132 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCC--------SSCSTTCSEEEEEHHHHHHHHHTT-------
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcc--------hhhccCCCEEEECHHHHHHHHHcC-------
Confidence 4789999986 88999999976653 368899998865431 123457899999999997754320
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCC--hhHHHHHHHHHh----ccCeEEEEeccCCCCChhhhHhh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMALRL----YAKHRWCITGTPIQRKLDDLYGL 647 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN--~~Sk~~kal~~L----~a~~RwlLTGTPIqN~l~DL~sL 647 (1207)
+..--.+.+||+||+|.+.. ........+..+ +..+.+++|+|+- +..++...
T Consensus 133 ---------------~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~~ 191 (702)
T 2p6r_A 133 ---------------ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP--NVTEIAEW 191 (702)
T ss_dssp ---------------CSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHHH
T ss_pred ---------------hhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHHH
Confidence 01112467899999999876 223333333344 3467899999974 25555543
No 54
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.59 E-value=1.7e-07 Score=117.94 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=79.8
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||+|. .+..||.++++++.. -++++..++|..... ...+...+|+|+|++.+...+...
T Consensus 69 ~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~--------~~~~~~~~Iiv~Tpe~l~~~~~~~------- 132 (720)
T 2zj8_A 69 GKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSK--------DEWLGKYDIIIATAEKFDSLLRHG------- 132 (720)
T ss_dssp SEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCC--------CGGGGGCSEEEECHHHHHHHHHHT-------
T ss_pred CEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcc--------ccccCCCCEEEECHHHHHHHHHcC-------
Confidence 479999997 688999999976653 258899999854321 123457899999999997654310
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCC--hhHHHHHHHHHhc-cCeEEEEeccCCCCChhhhHhhh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMALRLY-AKHRWCITGTPIQRKLDDLYGLL 648 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN--~~Sk~~kal~~L~-a~~RwlLTGTPIqN~l~DL~sLL 648 (1207)
+..--.+.+||+||+|.+.. ........+..++ ....+++|+|+- +..++-..+
T Consensus 133 ---------------~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~~~l 189 (720)
T 2zj8_A 133 ---------------SSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIG--NPEELAEWL 189 (720)
T ss_dssp ---------------CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCS--CHHHHHHHT
T ss_pred ---------------hhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcC--CHHHHHHHh
Confidence 01112567999999999875 2233344445565 567899999974 255555443
No 55
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.9e-07 Score=120.81 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=74.8
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+||++|.- |..||.+++.+++. .+.++.|.... ....+|+|+|++.|...+...
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~------------~~~~~IlV~Tpe~L~~~L~~~------- 284 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI------------NPDAGCLVMTTEILRSMLYRG------- 284 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC------------CCSCSEEEEEHHHHHHHHHHC-------
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc------------CCCCCEEEeChHHHHHHHHcC-------
Confidence 4799999984 78899999999884 56677775432 135899999999998865321
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh-HH-HHHHHHHhc-cCeEEEEeccCCCCChhhhHhhh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-AA-ATEMALRLY-AKHRWCITGTPIQRKLDDLYGLL 648 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-Sk-~~kal~~L~-a~~RwlLTGTPIqN~l~DL~sLL 648 (1207)
...--.+.+||+||||++.... .. ....+..++ ....++||+| +.|. .++..++
T Consensus 285 ---------------~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSAT-ipn~-~e~a~~l 341 (1108)
T 3l9o_A 285 ---------------SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSAT-IPNA-MEFAEWI 341 (1108)
T ss_dssp ---------------SSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECS-CSSC-HHHHHHH
T ss_pred ---------------ccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCC-CCCH-HHHHHHH
Confidence 1112357899999999997643 22 233334444 4668999999 4444 3444433
No 56
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.56 E-value=3.2e-07 Score=115.31 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=80.2
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||+|.- +..||.++++++.. -++++..+.|..... ...+...+|+|+|++.+...+...
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~--------~~~~~~~~Iiv~Tpe~l~~~~~~~------- 139 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTD--------DAWLKNYDIIITTYEKLDSLWRHR------- 139 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSC--------CGGGGGCSEEEECHHHHHHHHHHC-------
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCc--------hhhcCCCCEEEEcHHHHHHHHhCC-------
Confidence 4799999987 88999999976543 257888888864431 123457899999999998754320
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCCh--hHHHHHHHHHhccCeEEEEeccCCCCChhhhHhhh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESN--AAAATEMALRLYAKHRWCITGTPIQRKLDDLYGLL 648 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~--~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL 648 (1207)
+..--.+.+||+||+|.+.+. .......+.+++..+.+++|+||- +..++-..+
T Consensus 140 ---------------~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~--n~~~~~~~l 195 (715)
T 2va8_A 140 ---------------PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATIS--NYKQIAKWL 195 (715)
T ss_dssp ---------------CGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCT--THHHHHHHH
T ss_pred ---------------hhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCC--CHHHHHHHh
Confidence 111225689999999998752 233334455667788999999985 245554433
No 57
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.56 E-value=1.6e-07 Score=115.31 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=69.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCC----CCCCeEEEEcCCCccccccccchhhhh--ccCCcEEEEehHHHhhhcccCC
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTR----PGSLKTCIYEGARNSSLSDTSIMDISE--LVGADIVLTTYDVLKEDLSHDS 571 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~----~g~L~V~vy~G~~~~~~~~~~~~~~~~--l~~~DVVITTYetL~~d~~~~~ 571 (1207)
..+|||+|. .|+.||.+++.++.. -..+.+....|..... ..... ....+|+|+|++.|...+...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~------~~~~~l~~~~~~IlV~Tp~~l~~~l~~~- 168 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR------AAMNKMNKLRPNIVIATPGRLIDVLEKY- 168 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH------HHHHHHHHHCCSEEEECHHHHHHHHHHH-
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH------HHHHHHhcCCCCEEEECHHHHHHHHHhc-
Confidence 468999998 588999999998641 1145565555543211 01111 235899999999997654210
Q ss_pred CCcccchhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc--------cCeEEEEeccCCC
Q 000967 572 DRHEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY--------AKHRWCITGTPIQ 638 (1207)
Q Consensus 572 ~~~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~--------a~~RwlLTGTPIq 638 (1207)
....--.+.+||+||||.+-... ......+..+. ....+++|||+-.
T Consensus 169 --------------------~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 169 --------------------SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp --------------------HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred --------------------cccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence 01112246789999999986543 22222223332 3468999999753
No 58
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.52 E-value=1.6e-07 Score=115.68 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=79.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchh-hhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMD-ISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~-~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+.+|||+|. +|+.||.+.+.++ ++++..++|............. ......++|+++|++.|.....
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~-------- 152 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM-------- 152 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH--------
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH--------
Confidence 479999998 6889999999997 4777777776432100000000 0023578999999998864200
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChh-------HHHHHHHHHhccCeEEEEeccCCCCChhhhHhhhh
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------AAATEMALRLYAKHRWCITGTPIQRKLDDLYGLLR 649 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-------Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sLL~ 649 (1207)
..... ...+....+.+||+||||.+-... .........++....+++||||......++...+.
T Consensus 153 ---~~~~l------~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 153 ---FMSRL------EKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp ---HHHHH------HHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTT
T ss_pred ---HHHHH------HhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhC
Confidence 00000 001223367899999999976432 11222233455678999999997665566655544
No 59
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.52 E-value=2.5e-07 Score=112.63 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=68.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCC----CCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCC
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTR----PGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~----~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1207)
..+|||+|. .|..||.+++.++.. -..+.+....|...... ..........+|+|+|++.+...+...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--- 219 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA----AMNKMNKLRPNIVIATPGRLIDVLEKY--- 219 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH----HHHHHHHHCCSEEEECHHHHHHHHHHH---
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH----HHHHHhcCCCCEEEECcHHHHHHHHhc---
Confidence 469999998 588999999998532 11345555555432110 001111236899999999997654210
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc--------cCeEEEEeccCCC
Q 000967 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY--------AKHRWCITGTPIQ 638 (1207)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~--------a~~RwlLTGTPIq 638 (1207)
....--.+.+||+||||++-... ......+..+. ....+++|+||-.
T Consensus 220 ------------------~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 220 ------------------SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 276 (563)
T ss_dssp ------------------HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred ------------------cccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH
Confidence 00111236789999999976543 22222222232 3358999999853
No 60
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.51 E-value=4.1e-07 Score=118.30 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=73.4
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|||+|. .|..||.+++.+.++ .+++..++|.... ....+|+|+|.+.|.+.+...
T Consensus 83 ~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~------------~~~~~IlV~Tpe~L~~~l~~~------- 141 (997)
T 4a4z_A 83 TKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQI------------NPDANCLIMTTEILRSMLYRG------- 141 (997)
T ss_dssp CEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEE------------CTTSSEEEEEHHHHHHHHHHT-------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc------------CCCCCEEEECHHHHHHHHHhC-------
Confidence 469999997 588999999999885 6889999986432 134799999999998764310
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhc-cCeEEEEeccCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLY-AKHRWCITGTPI 637 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~-a~~RwlLTGTPI 637 (1207)
.+..-.+.+||+||||++.+.. ......+..++ ....++||+||-
T Consensus 142 ---------------~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~ 189 (997)
T 4a4z_A 142 ---------------ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP 189 (997)
T ss_dssp ---------------CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT
T ss_pred ---------------chhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCC
Confidence 1222357899999999986642 33344455554 467799999974
No 61
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.37 E-value=3.7e-06 Score=94.85 Aligned_cols=110 Identities=15% Similarity=0.028 Sum_probs=69.6
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCC-CCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRP-GSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~-g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
.+|||||.- |..|+.+++.++... +.+++..+.|..... .......+|+|+|.+.|...+....
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~IlV~TP~~l~~~l~~~~------ 229 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE--------RGQKISEQIVIGTPGTVLDWCSKLK------ 229 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCC--------TTCCCCCSEEEECHHHHHHHHTTTC------
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHh--------hhhcCCCCEEEECHHHHHHHHHhcC------
Confidence 589999985 778998888887642 257777777754321 1113457899999999976553100
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCC--hhHHHHHHH-HHhc-cCeEEEEeccCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVES--NAAAATEMA-LRLY-AKHRWCITGTPIQ 638 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN--~~Sk~~kal-~~L~-a~~RwlLTGTPIq 638 (1207)
.+.--...+||+||||++-. ........+ ..++ ....+++|+|+-.
T Consensus 230 ---------------~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 230 ---------------FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp ---------------CCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred ---------------CCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence 11123567899999998753 112222222 2333 3567889999743
No 62
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.15 E-value=1.4e-05 Score=104.98 Aligned_cols=117 Identities=9% Similarity=0.040 Sum_probs=78.0
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhc--cCCcEEEEehHHHhhhcccCCCCcc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISEL--VGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l--~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
..+|||+|.. |..|+.+++.++. ...+++..++|....... ......+ ..++|+|+|.+.|...+..
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er---~~~~~~l~~g~~~IlV~Tp~rL~~~l~~------ 191 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEK---EKFEKSFEEDDYHILVFSTQFVSKNREK------ 191 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHH---HHHHHHHHTSCCSEEEEEHHHHHHSHHH------
T ss_pred CeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHH---HHHHHHHhCCCCCEEEECHHHHHHHHHh------
Confidence 4699999985 7789999999976 346899999987543100 0011222 3489999999999765421
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccCChh-------------HH-HHHHHHHhc------------cCeE
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA-------------AA-ATEMALRLY------------AKHR 629 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~-------------Sk-~~kal~~L~------------a~~R 629 (1207)
+..-.+.+||+||||.+-... .. ....+..++ ....
T Consensus 192 ------------------l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ 253 (1104)
T 4ddu_A 192 ------------------LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGIL 253 (1104)
T ss_dssp ------------------HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEE
T ss_pred ------------------hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceE
Confidence 222367899999999764311 11 233333343 4578
Q ss_pred EEEeccCCCCChhh
Q 000967 630 WCITGTPIQRKLDD 643 (1207)
Q Consensus 630 wlLTGTPIqN~l~D 643 (1207)
+++|+||....+.+
T Consensus 254 ll~SAT~~p~~~~~ 267 (1104)
T 4ddu_A 254 VVSSATAKPRGIRP 267 (1104)
T ss_dssp EEECBSSCCCSSTT
T ss_pred EEEcCCCCcHHHHH
Confidence 99999988877664
No 63
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.79 E-value=6.8e-05 Score=98.24 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=76.1
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCC----eEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCC
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSL----KTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDR 573 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L----~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~ 573 (1207)
..+|||+|.. |..|+.+++.+++..-.+ ++..++|....... ......+...+|+|+|.+.|...+..
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~---~~~~~~l~~~~IlV~TP~~L~~~l~~---- 172 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREK---ENFMQNLRNFKIVITTTQFLSKHYRE---- 172 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHH---HHHHHSGGGCSEEEEEHHHHHHCSTT----
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhH---HHHHhhccCCCEEEEcHHHHHHHHHH----
Confidence 4689999985 778999999988764456 78888886543110 00122334489999999999875421
Q ss_pred cccchhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHHHHhc------------cCeEEEEeccCCCC
Q 000967 574 HEGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMALRLY------------AKHRWCITGTPIQR 639 (1207)
Q Consensus 574 ~~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~------------a~~RwlLTGTPIqN 639 (1207)
|. .+.+||+||||.+-+........+..+. ....+++|+|+...
T Consensus 173 --------------------L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 173 --------------------LG--HFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp --------------------SC--CCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC
T ss_pred --------------------hc--cCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc
Confidence 22 5779999999998764444444444442 23467888887765
No 64
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.53 E-value=0.00021 Score=87.18 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=28.6
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCC
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGA 534 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~ 534 (1207)
.++||++|+. +..||.+|+.+......+++.+..|.
T Consensus 48 ~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr 84 (551)
T 3crv_A 48 PKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGK 84 (551)
T ss_dssp SEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCH
T ss_pred CeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccc
Confidence 4799999985 77899999998765446888887774
No 65
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.52 E-value=0.00025 Score=86.43 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=20.2
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcC
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEG 533 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G 533 (1207)
+++||++|+. +..||.+|+.+. .+++.+..|
T Consensus 52 ~~~~~~~~t~~l~~q~~~~~~~l----~~~~~~l~g 83 (540)
T 2vl7_A 52 KKVLIFTRTHSQLDSIYKNAKLL----GLKTGFLIG 83 (540)
T ss_dssp CEEEEEESCHHHHHHHHHHHGGG----TCCEEEC--
T ss_pred CcEEEEcCCHHHHHHHHHHHHhc----CCcEEEecC
Confidence 4688888874 677888888774 355555554
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.36 E-value=0.00043 Score=81.88 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=57.0
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+||++|.. |..|+.+.+. .+.+..+.|.-.. .......+.+.+.+.+...+..
T Consensus 32 ~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~l~~-------- 87 (431)
T 2v6i_A 32 LRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS----------ERTGNEIVDFMCHSTFTMKLLQ-------- 87 (431)
T ss_dssp CCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------------CCCSEEEEEHHHHHHHHHH--------
T ss_pred CCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc----------cCCCCceEEEEchHHHHHHHhc--------
Confidence 3699999986 5578877664 3455544443111 1111233556677776543211
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhH-HHHHHHHHh---ccCeEEEEeccCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA-AATEMALRL---YAKHRWCITGTPIQR 639 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S-k~~kal~~L---~a~~RwlLTGTPIqN 639 (1207)
...--.+.+||+||+|++ +..+ .....+..+ ...+.+++|+||...
T Consensus 88 ---------------~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 88 ---------------GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ---------------TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred ---------------CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 011224689999999998 4332 223333333 257789999999863
No 67
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.29 E-value=0.00097 Score=71.95 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=57.5
Q ss_pred cEEEEeCCch-HHHHHHHHHhcCCCC-CCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 500 ATLIVCPAPI-LAQWDAEITRHTRPG-SLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 500 ~tLIV~P~SL-l~QW~~Ei~k~~~~g-~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..++++|.-. ..|..+.+.+..... ...+. | +.... ........+|+|+|.+.+.+.+..
T Consensus 111 ~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g-~-~~~~~--------~~~~~~~~~Ivv~Tpg~l~~~l~~-------- 172 (235)
T 3llm_A 111 NIVVTQPRRISAVSVAERVAFERGEEPGKSCG-Y-SVRFE--------SILPRPHASIMFCTVGVLLRKLEA-------- 172 (235)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTTCCTTSSEE-E-EETTE--------EECCCSSSEEEEEEHHHHHHHHHH--------
T ss_pred EEEEeccchHHHHHHHHHHHHHhccccCceEE-E-eechh--------hccCCCCCeEEEECHHHHHHHHHh--------
Confidence 5788899864 467777777665311 11111 1 11000 011114578999999988875421
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHH-HHHHH----hccCeEEEEeccCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT-EMALR----LYAKHRWCITGTPIQR 639 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~-kal~~----L~a~~RwlLTGTPIqN 639 (1207)
.+ -+..+||+||||... ...... ..++. .+....+++|+|+-..
T Consensus 173 ---------------~l--~~~~~lVlDEah~~~-~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 173 ---------------GI--RGISHVIVDEIHERD-INTDFLLVVLRDVVQAYPEVRIVLMSATIDTS 221 (235)
T ss_dssp ---------------CC--TTCCEEEECCTTSCC-HHHHHHHHHHHHHHHHCTTSEEEEEECSSCCH
T ss_pred ---------------hh--cCCcEEEEECCccCC-cchHHHHHHHHHHHhhCCCCeEEEEecCCCHH
Confidence 12 245789999999731 121111 22222 2345689999997543
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.28 E-value=0.0021 Score=87.86 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=75.2
Q ss_pred CcEEEEeCC-chHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPA-PILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
+.+|+|+|. +|..|=.+++.+.+.+-+++|..++|.... .......+||+|||++.+..-..+.. +
T Consensus 135 ~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~--------~~~~~~~~~IlVtTpEkld~llr~~~-----~ 201 (1724)
T 4f92_B 135 FKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQL--------CKEEISATQIIVCTPEKWDIITRKGG-----E 201 (1724)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSS--------CCTTGGGCSEEEECHHHHHHHTTSST-----T
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCC--------CccccCCCCEEEECHHHHHHHHcCCc-----c
Confidence 578999996 677777777776655447899999997543 22345678999999998754432110 0
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHH-----H---Hhc-cCeEEEEeccCCCCChhhhHh
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-----L---RLY-AKHRWCITGTPIQRKLDDLYG 646 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal-----~---~L~-a~~RwlLTGTPIqN~l~DL~s 646 (1207)
+ ..+. .-.+||+||+|++..........+ . .+. ....++||+|- .|++|+-.
T Consensus 202 ~-------------~~l~--~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~ 262 (1724)
T 4f92_B 202 R-------------TYTQ--LVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT 262 (1724)
T ss_dssp H-------------HHHT--TEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH
T ss_pred c-------------hhhc--CcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH
Confidence 0 1122 245799999999976443332221 1 122 34689999993 34666654
No 69
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.03 E-value=0.002 Score=80.05 Aligned_cols=99 Identities=18% Similarity=0.148 Sum_probs=64.2
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.+||++|.- +..|+.+.+.+.. ..++....|... .....+|++.|++.|....
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~------------~~~~~~IlV~TPGrLl~~~----------- 312 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT------------ITTGAPVTYSTYGKFLADG----------- 312 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE------------ECCCCSEEEEEHHHHHHTT-----------
T ss_pred eEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe------------ccCCCCEEEECcHHHHhCC-----------
Confidence 689999996 5579988887766 344545555421 1245789999999985421
Q ss_pred hhhhhcccCCCccccccccccceeeccCccccCChhHH-HHHHHHHhccC---eEEEEeccCCC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAA-ATEMALRLYAK---HRWCITGTPIQ 638 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk-~~kal~~L~a~---~RwlLTGTPIq 638 (1207)
.+..-.+.+|||||||++.-..-. ....+..+... ..+++|+||-.
T Consensus 313 --------------~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 313 --------------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp --------------SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred --------------CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 133446789999999988533222 22333344332 35778999875
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.00 E-value=0.0025 Score=87.11 Aligned_cols=119 Identities=12% Similarity=0.117 Sum_probs=71.1
Q ss_pred CcEEEEeCC-chHHHHHHHHHh-cCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCccc
Q 000967 499 GATLIVCPA-PILAQWDAEITR-HTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEG 576 (1207)
Q Consensus 499 ~~tLIV~P~-SLl~QW~~Ei~k-~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~ 576 (1207)
+.+|+|+|. +|..|=.+++.+ +...-+++|..+.|.... +......+||+|+|++.+..-......
T Consensus 973 ~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~--------~~~~~~~~~IiV~TPEkld~llr~~~~---- 1040 (1724)
T 4f92_B 973 GRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETST--------DLKLLGKGNIIISTPEKWDILSRRWKQ---- 1040 (1724)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHH--------HHHHHHHCSEEEECHHHHHHHHTTTTT----
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCc--------chhhcCCCCEEEECHHHHHHHHhCccc----
Confidence 468999997 566665555543 222226889888886432 334456789999999987554321100
Q ss_pred chhhhhhcccCCCccccccccccceeeccCccccCChhHHHHHHH-HHh-------c-cCeEEEEeccCCCCChhhhHhh
Q 000967 577 DRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATEMA-LRL-------Y-AKHRWCITGTPIQRKLDDLYGL 647 (1207)
Q Consensus 577 ~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~kal-~~L-------~-a~~RwlLTGTPIqN~l~DL~sL 647 (1207)
...+. .-.+||+||+|++..........+ .++ . ..+.++||+|- . |..|+-..
T Consensus 1041 --------------~~~l~--~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl-~-N~~dla~W 1102 (1724)
T 4f92_B 1041 --------------RKNVQ--NINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL-S-NAKDVAHW 1102 (1724)
T ss_dssp --------------CHHHH--SCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB-T-THHHHHHH
T ss_pred --------------ccccc--eeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC-C-CHHHHHHH
Confidence 01122 346899999999976544433322 222 2 24568899983 2 46665443
No 71
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.86 E-value=0.0025 Score=75.79 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=58.8
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+||++|.- |..|+.+++. .+.+. |...... ........|.++|.+.+...+..
T Consensus 49 ~~~lvl~Ptr~La~Q~~~~l~------g~~v~-~~~~~~~---------~~~~~~~~i~~~t~~~l~~~l~~-------- 104 (451)
T 2jlq_A 49 LRTLILAPTRVVAAEMEEALR------GLPIR-YQTPAVK---------SDHTGREIVDLMCHATFTTRLLS-------- 104 (451)
T ss_dssp CCEEEEESSHHHHHHHHHHTT------TSCEE-ECCTTCS---------CCCCSSCCEEEEEHHHHHHHHHH--------
T ss_pred CcEEEECCCHHHHHHHHHHhc------Cceee-eeecccc---------ccCCCCceEEEEChHHHHHHhhC--------
Confidence 4699999986 6678888874 23332 2221110 01223456888898888765421
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHHH-HHHH---hccCeEEEEeccCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAATE-MALR---LYAKHRWCITGTPIQR 639 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~k-al~~---L~a~~RwlLTGTPIqN 639 (1207)
...--.+.+||+||||++ +....... .+.. ......+++|+||...
T Consensus 105 ---------------~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 154 (451)
T 2jlq_A 105 ---------------STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 154 (451)
T ss_dssp ---------------CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred ---------------cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCcc
Confidence 011224689999999988 33322221 1111 1246789999999653
No 72
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.84 E-value=0.00035 Score=61.47 Aligned_cols=55 Identities=25% Similarity=0.646 Sum_probs=39.4
Q ss_pred hhhhhhhcccccccccccccccccc--cccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 411 RERVECICGAVSESRKYKGLWVQCD--ICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 411 ~~~v~cic~~~~~~~~~~g~~v~c~--~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
.+.+.|+|+...+ .|.+|+|+ .|..|+|..|||+..+.... ......|+|+.|..
T Consensus 8 e~~v~C~C~~~~~----~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~------------------~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRCICSSTMV----NDSMIQCEDQRCQVWQHLNCVLIPDKPGES------------------AEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECCTTCCCSC----CSCEEECSCTTTCEEEETTTSCCCSSTTSC------------------CCCCSSCCCHHHHH
T ss_pred CCCEEeECCCCcC----CCCEEEECCCCCCCeEchhhCCCCcccccc------------------cCCCCcEECcCccC
Confidence 3568899987543 46899999 59999999999986532110 01235799999964
No 73
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.78 E-value=0.00036 Score=58.08 Aligned_cols=49 Identities=22% Similarity=0.621 Sum_probs=37.4
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
+.+.|+|+.... .+.+|+|+.|..|+|..|||..... ....|+|+.|.+
T Consensus 3 d~~~C~C~~~~~----~~~MI~Cd~C~~W~H~~Cvgi~~~~-----------------------~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFA----GRPMIECNECHTWIHLSCAKIRKSN-----------------------VPEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCT----TCCEEECTTTCCEEETTTTTCCGGG-----------------------CCSSCCCHHHHT
T ss_pred cCeEEEeCCcCC----CCCEEEcCCCCccccccccCCCccc-----------------------CCCcEECcCCCC
Confidence 356799997543 4689999999999999999865421 136899999963
No 74
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.60 E-value=0.00074 Score=59.41 Aligned_cols=51 Identities=22% Similarity=0.562 Sum_probs=39.1
Q ss_pred hhhhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 410 KRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 410 ~~~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
..+.+.|+|+.... .+.+|+|+.|..|+|..|||..... ....|+|+.|..
T Consensus 16 ~~~~~~CiC~~~~~----~~~MIqCd~C~~WfH~~Cvgi~~~~-----------------------~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTCFCMKPFA----GRPMIECNECHTWIHLSCAKIRKSN-----------------------VPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCSTTCCCCT----TCCEEECTTTCCEEETTTTTCCTTS-----------------------CCSSCCCHHHHT
T ss_pred CCCceEeECCCcCC----CCCEEECCCCCccccccccCcCccc-----------------------CCCcEECCCCCC
Confidence 34568899997543 4579999999999999999875421 136899999963
No 75
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.59 E-value=0.00066 Score=60.34 Aligned_cols=52 Identities=27% Similarity=0.726 Sum_probs=38.9
Q ss_pred hhhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 411 RERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 411 ~~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
...+.|+|+...+ ....||+|+.|..|+|..||+..... .....|+|+.|..
T Consensus 14 ~~~~~C~C~~~~~---~g~~mI~Cd~C~~W~H~~Cvg~~~~~----------------------~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDCKCGTKDD---DGERMLACDGCGVWHHTRCIGINNAD----------------------ALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECCTTCCCSC---CSSCEEECSSSCEEEETTTTTCCTTS----------------------CCCSCCCCHHHHH
T ss_pred CcceEeeCCCccC---CCCcEEECCCCCCccCCeeeccCccc----------------------cCCCcEECCCccC
Confidence 3467899997632 12369999999999999999976421 0246899999975
No 76
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.51 E-value=0.0057 Score=72.81 Aligned_cols=101 Identities=16% Similarity=0.083 Sum_probs=55.2
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+||++|.- |..|+.+++.. +.+....+.-. ........+.+.+...+.+.+..
T Consensus 51 ~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~----------~~~t~~~~i~~~~~~~l~~~l~~-------- 106 (459)
T 2z83_A 51 LRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQ----------REHQGNEIVDVMCHATLTHRLMS-------- 106 (459)
T ss_dssp CCEEEEECSHHHHHHHHHHTTT------SCEEECC------------------CCCSEEEEEHHHHHHHHHS--------
T ss_pred CcEEEECchHHHHHHHHHHhcC------ceEeEEecccc----------cCCCCCcEEEEEchHHHHHHhhc--------
Confidence 4689999986 67898888762 22222111100 00112234667777776654321
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhHHHH-HHHHH---hccCeEEEEeccCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAAAAT-EMALR---LYAKHRWCITGTPIQR 639 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~Sk~~-kal~~---L~a~~RwlLTGTPIqN 639 (1207)
...--.+.+||+||||... ..+... ..+.. ......+++|+||-..
T Consensus 107 ---------------~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 107 ---------------PNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGT 156 (459)
T ss_dssp ---------------CC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred ---------------cccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCcc
Confidence 0112256899999999862 222111 11221 2456889999999643
No 77
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.40 E-value=0.0007 Score=61.15 Aligned_cols=55 Identities=27% Similarity=0.645 Sum_probs=40.8
Q ss_pred hhhhhhcccccccccccccccccc--cccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCD--ICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~--~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
..+.|+|+...+ .|.+|+|+ .|..|+|..||+....... ........|+|+.|..
T Consensus 15 ~~~~CiC~~~~~----~g~MI~CD~~~C~~W~H~~CVgi~~~~~~-----------------~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRCVCGNSLE----TDSMIQCEDPRCHVWQHVGCVILPDKPMD-----------------GNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCCSSCCCCC----CSCEEECSSTTTCCEEEHHHHSCCCTTTC-----------------SCSCSCSSCCCHHHHH
T ss_pred CCEEeECCCcCC----CCCEEEECCccCCccccCEEEcccccccc-----------------ccccCCCCEECCCCCc
Confidence 567899998832 47899999 9999999999998653210 0011356899999975
No 78
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.37 E-value=0.0089 Score=73.96 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=59.1
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGD 577 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~ 577 (1207)
..+||++|.- |..|+.+++.. +.+. |.+..-. ........+.+++++.+.+.+..
T Consensus 216 ~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l~---------~~~tp~~~i~~~t~~~l~~~l~~-------- 271 (618)
T 2whx_A 216 LRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK---------SDHTGREIVDLMCHATFTTRLLS-------- 271 (618)
T ss_dssp CCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTSS---------CCCCSSSCEEEEEHHHHHHHHHH--------
T ss_pred CeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccce---------eccCCCceEEEEChHHHHHHHhc--------
Confidence 3699999986 66788887753 2332 4432210 01122345667788877764321
Q ss_pred hhhhhhcccCCCccccccccccceeeccCccccCChhH--HHHHHHHHh--ccCeEEEEeccCCCC
Q 000967 578 RRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNAA--AATEMALRL--YAKHRWCITGTPIQR 639 (1207)
Q Consensus 578 ~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~S--k~~kal~~L--~a~~RwlLTGTPIqN 639 (1207)
...--.+.+||+||||++ +... ........+ .....+++|+||...
T Consensus 272 ---------------~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 272 ---------------STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 321 (618)
T ss_dssp ---------------CSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred ---------------cccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchh
Confidence 011234689999999998 3332 222222333 346789999999654
No 79
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.23 E-value=0.001 Score=59.63 Aligned_cols=58 Identities=22% Similarity=0.565 Sum_probs=42.0
Q ss_pred hhhhhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 000967 409 LKRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1207)
Q Consensus 409 ~~~~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~ 488 (1207)
+....+.|+|+...+ -.+.+|+|+.|..|+|..||+..... +.....|+|+.|...
T Consensus 6 ~~~~~~yCiC~~~~~---~~~~MI~Cd~C~~WfH~~Cvg~~~~~---------------------~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 6 MATVPVYCVCRLPYD---VTRFMIECDACKDWFHGSCVGVEEEE---------------------APDIDIYHCPNCEKT 61 (75)
T ss_dssp TCCCCEETTTTEECC---TTSCEEECTTTCCEEEHHHHTCCTTT---------------------GGGBSSCCCHHHHHH
T ss_pred CCCCeeEEECCCcCC---CCCCEEEcCCCCCCEecccccccccc---------------------cCCCCEEECCCCccc
Confidence 344567899996432 24689999999999999999876431 112367999999865
Q ss_pred hh
Q 000967 489 IE 490 (1207)
Q Consensus 489 ~~ 490 (1207)
..
T Consensus 62 ~~ 63 (75)
T 3kqi_A 62 HG 63 (75)
T ss_dssp HC
T ss_pred CC
Confidence 43
No 80
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=96.07 E-value=0.0022 Score=60.39 Aligned_cols=35 Identities=40% Similarity=1.085 Sum_probs=29.6
Q ss_pred hhhhhhhcccccccccccccccccccccccccccccCcC
Q 000967 411 RERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYS 449 (1207)
Q Consensus 411 ~~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~ 449 (1207)
.+.+.|+|+...+ .|.+|+|+.|..|+|..|++..
T Consensus 26 ~d~vrCiC~~~~~----~~~mi~Cd~C~~w~H~~C~~~~ 60 (98)
T 2lv9_A 26 TDVTRCICGFTHD----DGYMICCDKCSVWQHIDCMGID 60 (98)
T ss_dssp CCBCCCTTSCCSC----SSCEEEBTTTCBEEETTTTTCC
T ss_pred CCCEEeECCCccC----CCcEEEcCCCCCcCcCcCCCCC
Confidence 4568899998754 4789999999999999999864
No 81
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.07 E-value=0.016 Score=68.60 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=27.3
Q ss_pred ccceeeccCccccCChhHHH-HHHHHHh---ccCeEEEEeccCCCC
Q 000967 598 FWWRICLDEAQMVESNAAAA-TEMALRL---YAKHRWCITGTPIQR 639 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~-~kal~~L---~a~~RwlLTGTPIqN 639 (1207)
.+.+||+||+|++ +..... ...+..+ .....+++|+||..+
T Consensus 99 ~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 99 NWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGT 143 (440)
T ss_dssp CCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred CccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCch
Confidence 5689999999999 333221 1222222 356789999999876
No 82
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.07 E-value=0.011 Score=73.76 Aligned_cols=41 Identities=22% Similarity=0.150 Sum_probs=27.3
Q ss_pred ccceeeccCccccCChhH-HHHHHHHHh---ccCeEEEEeccCCCC
Q 000967 598 FWWRICLDEAQMVESNAA-AATEMALRL---YAKHRWCITGTPIQR 639 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~S-k~~kal~~L---~a~~RwlLTGTPIqN 639 (1207)
.+.+||+||||++ +... .....+..+ ...+.+++|+||...
T Consensus 332 ~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 332 NYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGT 376 (673)
T ss_dssp CCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred cceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChh
Confidence 5789999999999 2221 222233332 356789999999754
No 83
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.92 E-value=0.042 Score=69.53 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=66.6
Q ss_pred cEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 500 ~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
.++||+|+-.+ .+|...+-+++ ++++.+..|..... ........||++.|-+.|.-++-...-
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~l---GLsv~~i~Gg~~~~-------~r~~ay~~DIvyGTpgrlgfDyLrd~m--- 188 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGL---GLSVGVIQHASTPA-------ERRKAYLADVTYVTNSELGFDYLRDNM--- 188 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTT---TCCEEECCTTCCHH-------HHHHHHTSSEEEEEHHHHHHHHHHHTS---
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhc---CCeEEEEeCCCCHH-------HHHHHcCCCEEEECchhhhhHHHHHhh---
Confidence 58999999865 36888898888 68888877753211 112223589999998887433211000
Q ss_pred cchhhhhhcccCCCcccccccc---ccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCChhhhHhh
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRI---FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKLDDLYGL 647 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i---~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l~DL~sL 647 (1207)
.+. +..+..- ...++|+||+|.+--. .+..-+++|| |++.. ..+|..
T Consensus 189 ----------~~~--~~~l~~r~d~~l~~lIIDEaDsmLiD-----------eartPLIISg-p~~~~-~~lY~~ 238 (997)
T 2ipc_A 189 ----------AIS--PDQLVLRHDHPLHYAIIDEVDSILID-----------EARTPLIISG-PAEKA-TDLYYK 238 (997)
T ss_dssp ----------CSS--TTTCCSCSSSSSCEEEETTHHHHTTS-----------STTSCEEEEE-SCSSC-HHHHHH
T ss_pred ----------hcc--hhhcccccCCCcceEEEechHHHHHh-----------CCCCCeeeeC-CCccc-hHHHHH
Confidence 000 0012222 5678999999954211 2333489999 88877 444443
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.86 E-value=0.002 Score=58.22 Aligned_cols=54 Identities=24% Similarity=0.633 Sum_probs=40.1
Q ss_pred hhhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 000967 411 RERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1207)
Q Consensus 411 ~~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~ 488 (1207)
.+.+.|+|+...+ ..+.||||+.|..|.|..||+..... +.....|+|+.|...
T Consensus 10 ~~~~~C~C~~~~d---~~~~MIqCd~C~~WfH~~Cvgl~~~~---------------------~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 10 LVPVYCLCRQPYN---VNHFMIECGLCQDWFHGSCVGIEEEN---------------------AVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCSTTSCSCC---SSSCEEEBTTTCCEEEHHHHTCCHHH---------------------HTTCSBBCCTTTTTT
T ss_pred CCccEEEcCCccC---CCCceEEcCCCCCcEEeeecCccccc---------------------ccCCCeEECCCcccc
Confidence 3457899998653 24789999999999999999864310 112468999999764
No 85
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.83 E-value=0.0039 Score=53.89 Aligned_cols=50 Identities=28% Similarity=0.839 Sum_probs=37.0
Q ss_pred hhh-hcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 414 VEC-ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 414 v~c-ic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
..| +|+...+. .+.||||+.|..|.|..||+..... +.....|+|+.|..
T Consensus 7 ~~C~~C~~~~~~---~~~mI~Cd~C~~WfH~~Cvgl~~~~---------------------~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAA---DEFWICCDLCEMWFHGKCVKITPAR---------------------AEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCS---SSCEEECSSSCCEEETTTTTCCTTG---------------------GGGCSSCCCHHHHT
T ss_pred CCCCCCCCccCC---CCCEEEccCCCCCCCccccCcChhH---------------------hcCCCcEECCCCcC
Confidence 457 88866432 3689999999999999999876431 11246899999975
No 86
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.42 E-value=0.0011 Score=59.35 Aligned_cols=55 Identities=31% Similarity=0.701 Sum_probs=39.3
Q ss_pred hhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 000967 413 RVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1207)
Q Consensus 413 ~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~ 488 (1207)
.+.|+|+.... .+.||+|+.|..|+|..||+...... ..+......|+|+.|...
T Consensus 16 ~~~C~C~~~~~----~~~MI~Cd~C~~WfH~~Cvgl~~~~~-----------------~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYCICRQPHN----NRFMICCDRCEEWFHGDCVGISEARG-----------------RLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCSTTCCCCC----SSCEEECSSSCCEEEHHHHSCCHHHH-----------------HHHHHHTCCCCCHHHHHH
T ss_pred CCEEECCCccC----CCCEEEeCCCCCcEeCeEEccchhhh-----------------hhccCCCCeEECcCCcCc
Confidence 57899997653 46899999999999999998653210 001113578999999753
No 87
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.03 E-value=0.02 Score=70.79 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=15.5
Q ss_pred ceeecCCCcchHHHHHHHHHH
Q 000967 360 GILADEMGLGKTVELLACIFA 380 (1207)
Q Consensus 360 GILADEMGLGKTvq~LALIl~ 380 (1207)
.|+.--.|.|||+..|.-++.
T Consensus 25 ~~~~apTGtGKT~a~l~p~l~ 45 (620)
T 4a15_A 25 VALESPTGSGKTIMALKSALQ 45 (620)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456667899999988765544
No 88
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.66 E-value=0.061 Score=68.23 Aligned_cols=104 Identities=12% Similarity=-0.007 Sum_probs=57.5
Q ss_pred cEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccch
Q 000967 500 ATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDR 578 (1207)
Q Consensus 500 ~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~ 578 (1207)
.++|++|.. +..|+.+.+.+... .++....|... +. ........+|+++|.+.+.+.+...
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~---~~v~~~vG~~i-~~------~~~~~~~~~I~v~T~G~l~r~l~~~-------- 203 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMD---VKLGEEVGYSI-RF------ENKTSNKTILKYMTDGMLLREAMED-------- 203 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTT---CCBTTTEEEEE-TT------EEECCTTCSEEEEEHHHHHHHHHHS--------
T ss_pred eEEecCchHHHHHHHHHHHHHHhC---Cchhheeccee-cc------ccccCCCCCEEEECHHHHHHHHhhC--------
Confidence 588999986 45677777766552 22211111100 00 0111246789999999988754210
Q ss_pred hhhhhcccCCCccccccccccceeeccCccc-cCChhH--HHHHHHHHh-ccCeEEEEeccC
Q 000967 579 RFMRFQKRYPVIPTLLTRIFWWRICLDEAQM-VESNAA--AATEMALRL-YAKHRWCITGTP 636 (1207)
Q Consensus 579 ~~~r~~kry~~~~s~L~~i~w~rVILDEAH~-IKN~~S--k~~kal~~L-~a~~RwlLTGTP 636 (1207)
..--...+||+||+|. .-+... ...+.+... +....+++|+|+
T Consensus 204 ---------------~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~ 250 (773)
T 2xau_A 204 ---------------HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATL 250 (773)
T ss_dssp ---------------TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCS
T ss_pred ---------------ccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 1123568999999994 222221 112222222 345678999999
No 89
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=94.30 E-value=0.25 Score=62.68 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=54.9
Q ss_pred CcEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCc
Q 000967 499 GATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRH 574 (1207)
Q Consensus 499 ~~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~ 574 (1207)
..++||+|+--+ .+|...+.+++ ++++.+..|..... ........||++.|-+.|.-++-.+.-
T Consensus 153 ~~v~VvTpTreLA~Qdae~m~~l~~~l---GLsv~~i~gg~~~~-------~r~~~y~~DIvygTpgrlgfDyLrD~m-- 220 (922)
T 1nkt_A 153 NGVHIVTVNDYLAKRDSEWMGRVHRFL---GLQVGVILATMTPD-------ERRVAYNADITYGTNNEFGFDYLRDNM-- 220 (922)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHT---TCCEEECCTTCCHH-------HHHHHHHSSEEEEEHHHHHHHHHHHTT--
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHH-------HHHHhcCCCEEEECchHhhHHHHHhhh--
Confidence 368999998754 47999999998 69988776643211 111223579999998887433211000
Q ss_pred ccchhhhhhcccCCCccccccccccceeeccCccccC
Q 000967 575 EGDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1207)
Q Consensus 575 ~~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1207)
. + ....+..-...++|||||+.+-
T Consensus 221 -------~----~--~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 221 -------A----H--SLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp -------C----S--SGGGCCCCCCCEEEETTHHHHH
T ss_pred -------h----c--cHhhhccCCCCEEEEeChHHHH
Confidence 0 0 0012334467899999999764
No 90
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=94.13 E-value=0.24 Score=61.78 Aligned_cols=94 Identities=17% Similarity=0.063 Sum_probs=59.0
Q ss_pred EEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcccchh
Q 000967 501 TLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHEGDRR 579 (1207)
Q Consensus 501 tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~~~~~ 579 (1207)
.+|++|.- |..|+.+.+.+. ++++..+.|....- ....-...+++++|.+.+..
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~i-------v~TpGr~~~il~~T~e~~~l-------------- 236 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVT-------VQPNGKQASHVSCTVEMCSV-------------- 236 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEEC-------CSTTCCCCSEEEEEGGGCCS--------------
T ss_pred eEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEE-------ecCCCcccceeEecHhHhhh--------------
Confidence 48999986 567999988875 46787888764321 11112346788887754321
Q ss_pred hhhhcccCCCccccccccccceeeccCccccCChh--HHHHHHHHHhcc--CeEEEEecc
Q 000967 580 FMRFQKRYPVIPTLLTRIFWWRICLDEAQMVESNA--AAATEMALRLYA--KHRWCITGT 635 (1207)
Q Consensus 580 ~~r~~kry~~~~s~L~~i~w~rVILDEAH~IKN~~--Sk~~kal~~L~a--~~RwlLTGT 635 (1207)
.-.+++||+||+|++.+.. ......+..+.+ .+.+++|+|
T Consensus 237 ----------------~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 237 ----------------TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp ----------------SSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred ----------------cccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 1245899999999986542 334455666653 334555666
No 91
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=93.98 E-value=0.0089 Score=49.61 Aligned_cols=32 Identities=50% Similarity=0.939 Sum_probs=23.8
Q ss_pred hhcccccccccccccccccc-cccccccccccCcCC
Q 000967 416 CICGAVSESRKYKGLWVQCD-ICDAWQHADCVGYSP 450 (1207)
Q Consensus 416 cic~~~~~~~~~~g~~v~c~-~c~~wqh~~cv~~~~ 450 (1207)
|+|+.... -.+.||+|+ .|..|.|..|||...
T Consensus 6 c~C~~p~~---~~~~mI~Cd~~C~~WfH~~Cvgl~~ 38 (52)
T 2kgg_A 6 QNCQRPCK---DKVDWVQCDGGCDEWFHQVCVGVSP 38 (52)
T ss_dssp TTCCCCCC---TTCCEEECTTTTCCEEETTTTTCCH
T ss_pred CCCcCccC---CCCcEEEeCCCCCccCcccccCCCc
Confidence 55654432 246799999 899999999998643
No 92
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=93.92 E-value=0.2 Score=63.39 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=53.3
Q ss_pred cEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 500 ~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
.+|||+|+-=+ .+|...+.+++ ++++.+..|..... ........||++.|-+.|.-++-.+.-.
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~l---gl~v~~i~gg~~~~-------~r~~~~~~dIv~gTpgrlgfD~L~D~m~-- 193 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFL---GLTVGLNLNSMSKD-------EKREAYAADITYSTNNELGFDYLRDNMV-- 193 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT---TCCEEECCTTSCHH-------HHHHHHHSSEEEEEHHHHHHHHHHHTTC--
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhc---CCeEEEEeCCCCHH-------HHHHhcCCCEEEECchhhhHHHHHHhhh--
Confidence 58999999744 35999999988 68887766643211 1111235799999998884332110000
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCcccc
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMV 610 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~I 610 (1207)
+ ....+..-...++|||||+++
T Consensus 194 -----------~--~~~~l~lr~~~~lVlDEaD~m 215 (844)
T 1tf5_A 194 -----------L--YKEQMVQRPLHFAVIDEVDSI 215 (844)
T ss_dssp -----------S--SGGGCCCCCCCEEEEETHHHH
T ss_pred -----------c--chhhhcccCCCEEEECchhhh
Confidence 0 001233446778999999985
No 93
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.88 E-value=0.34 Score=60.09 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=27.8
Q ss_pred ccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCC
Q 000967 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQ 638 (1207)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIq 638 (1207)
+....|+.||+|||..+--+. ++..|....+++|-|=|-|
T Consensus 362 ~~~~~Fd~vIIDEAsQ~~e~~-----~lipL~~~~~~ILVGD~~Q 401 (646)
T 4b3f_X 362 LPESYFDVVVIDECAQALEAS-----CWIPLLKARKCILAGDHKQ 401 (646)
T ss_dssp SCTTCCSEEEETTGGGSCHHH-----HTTTGGGSSEEEEEECTTS
T ss_pred hhhccCCEEEEcCccccchHH-----HHhhccccceEEEcCCccc
Confidence 456779999999986653222 2333445568899999887
No 94
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=93.85 E-value=0.2 Score=63.35 Aligned_cols=87 Identities=17% Similarity=0.091 Sum_probs=53.6
Q ss_pred cEEEEeCCchH----HHHHHHHHhcCCCCCCeEEEEcCCCccccccccchhhhhccCCcEEEEehHHHhhhcccCCCCcc
Q 000967 500 ATLIVCPAPIL----AQWDAEITRHTRPGSLKTCIYEGARNSSLSDTSIMDISELVGADIVLTTYDVLKEDLSHDSDRHE 575 (1207)
Q Consensus 500 ~tLIV~P~SLl----~QW~~Ei~k~~~~g~L~V~vy~G~~~~~~~~~~~~~~~~l~~~DVVITTYetL~~d~~~~~~~~~ 575 (1207)
.+|||||+--+ .+|...+.+++ ++++.+..|..... ........||++.|-+.|.-++-.+.-
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~l---gl~v~~i~GG~~~~-------~r~~~~~~dIvvgTpgrl~fDyLrd~~--- 183 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFL---GLTVGINLPGMPAP-------AKREAYAADITYGTNNEYGFDYLRDNM--- 183 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHT---TCCEEECCTTCCHH-------HHHHHHHSSEEEEEHHHHHHHHHHHTT---
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhc---CCeEEEEeCCCCHH-------HHHHhcCCCEEEECCchhhHHHHHhhh---
Confidence 58999999754 46888888887 68888777653211 111223579999998887432210000
Q ss_pred cchhhhhhcccCCCccccccccccceeeccCccccC
Q 000967 576 GDRRFMRFQKRYPVIPTLLTRIFWWRICLDEAQMVE 611 (1207)
Q Consensus 576 ~~~~~~r~~kry~~~~s~L~~i~w~rVILDEAH~IK 611 (1207)
.+ .+..+..-...++||||||++-
T Consensus 184 ----------~~--~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 184 ----------AF--SPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp ----------CS--SGGGCCCCSCCEEEESCHHHHT
T ss_pred ----------hc--cHhHhcccCCcEEEECchHHHH
Confidence 00 0012344567789999999643
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.46 E-value=0.68 Score=57.18 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=28.9
Q ss_pred ccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCC
Q 000967 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN 639 (1207)
+....|+.||+|||...-.+. ..+..+....+++|-|=|-|-
T Consensus 335 l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 335 LAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhcc
Confidence 445689999999997665442 123333445789999999873
No 96
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=93.34 E-value=0.012 Score=70.44 Aligned_cols=56 Identities=29% Similarity=0.638 Sum_probs=41.2
Q ss_pred hhhhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 000967 410 KRERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1207)
Q Consensus 410 ~~~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~ 489 (1207)
....+.|+|+...+ -.+.+|||+.|..|.|..|||..... +.....|+|+.|....
T Consensus 34 ~~~~~yC~C~~~~d---~~~~MIqCd~C~~WfH~~Cvgl~~~~---------------------~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 34 PPPPVYCVCRQPYD---VNRFMIECDICKDWFHGSCVGVEEHH---------------------AVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCEETTTTEECC---TTSCEEEBTTTCCEEEHHHHTCCGGG---------------------GGGEEEBCCHHHHHHH
T ss_pred CCCCeEEeCCCcCC---CCCCeEEccCCCCceeeeecCcCccc---------------------ccCCCEEECCCCcCCc
Confidence 34567899997643 24789999999999999999865421 1123679999998643
No 97
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.15 E-value=0.02 Score=50.61 Aligned_cols=50 Identities=36% Similarity=0.743 Sum_probs=38.0
Q ss_pred hhhhhhccccccccccccccccccccc---ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDICD---AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~c~---~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~ 488 (1207)
+.+.|+|.... .|.+|+||.|+ .|.|..||+.... ..+.|+|+.|...
T Consensus 5 ~~~yC~C~~~~-----~g~MI~CD~cdC~~~WfH~~Cvgl~~~------------------------p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 5 SSGYCICNQVS-----YGEMVGCDNQDCPIEWFHYGCVGLTEA------------------------PKGKWYCPQCTAA 55 (70)
T ss_dssp CCCCSTTSCCC-----CSSEECCSCTTCSCCCEEHHHHTCSSC------------------------CSSCCCCHHHHHH
T ss_pred CCeEEEcCCCC-----CCCEeEeCCCCCCccCCcccccccCcC------------------------CCCCEECCCCCcc
Confidence 34679998763 35899999985 8999999986432 3578999999865
Q ss_pred hh
Q 000967 489 IE 490 (1207)
Q Consensus 489 ~~ 490 (1207)
..
T Consensus 56 ~~ 57 (70)
T 1x4i_A 56 MK 57 (70)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 98
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=93.09 E-value=0.036 Score=49.34 Aligned_cols=51 Identities=27% Similarity=0.601 Sum_probs=37.4
Q ss_pred hhhh-hcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 000967 413 RVEC-ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1207)
Q Consensus 413 ~v~c-ic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~ 489 (1207)
...| +|+.... ...+|+|+.|..|.|..||+..... ...+.|+|+.|....
T Consensus 18 ~~~C~~C~~~~~----~~~mi~CD~C~~wfH~~Cv~~~~~~----------------------~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPDD----GSPMIGCDDCDDWYHWPCVGIMAAP----------------------PEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCCS----SCCEEECSSSSSEEEHHHHTCSSCC----------------------CSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCCCC----CCCEEEcCCCCcccccccCCCCccC----------------------CCCCCEEChhccCch
Confidence 3457 7887642 3479999999999999999865421 124689999997643
No 99
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.08 E-value=0.01 Score=70.15 Aligned_cols=54 Identities=26% Similarity=0.642 Sum_probs=39.6
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~ 489 (1207)
..+.|+|+...+ -.+.+|+|+.|..|.|..|||..... +.....|+|+.|....
T Consensus 4 ~~~yCiC~~~~d---~~~~MIqCD~C~~WfH~~CVgi~~~~---------------------~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 4 VPVYCLCRLPYD---VTRFMIECDMCQDWFHGSCVGVEEEK---------------------AADIDLYHCPNCEVLH 57 (447)
T ss_dssp CCEETTTTEECC---TTSCEEECTTTCCEEEHHHHTCCHHH---------------------HTTEEECCCHHHHHHH
T ss_pred CCeEEeCCCcCC---CCCCeEEcCCCCcccccccCCcCccc---------------------ccCCCEEECCCCcccc
Confidence 346799997642 24789999999999999999864310 1123679999998644
No 100
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=92.56 E-value=0.016 Score=55.28 Aligned_cols=45 Identities=20% Similarity=0.506 Sum_probs=31.5
Q ss_pred cccccccc-cccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 000967 428 KGLWVQCD-ICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1207)
Q Consensus 428 ~g~~v~c~-~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~ 488 (1207)
.+.|++|+ .|..|-|..|||..... .+... ......|+|+.|...
T Consensus 16 ~~~mi~Cdd~C~~WfH~~CVglt~~~--------~~~i~--------~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 16 DQDAILCEASCQKWFHRECTGMTESA--------YGLLT--------TEASAVWACDLCLKT 61 (105)
T ss_dssp TSCEEECTTTTCCEEEGGGTTCCHHH--------HHHHH--------HCTTEEECCHHHHHT
T ss_pred CCCEEEecCCcccccccccCCcCHHH--------HHhhc--------cCCCCCEECccccCc
Confidence 46799998 99999999999865421 00000 123478999999864
No 101
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=92.48 E-value=0.059 Score=49.87 Aligned_cols=52 Identities=37% Similarity=0.756 Sum_probs=39.0
Q ss_pred hhhhhhhhccccccccccccccccccccc---ccccccccCcCCCCCcccchhhhhhhcccccccccccccCcccccc-c
Q 000967 410 KRERVECICGAVSESRKYKGLWVQCDICD---AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQW-C 485 (1207)
Q Consensus 410 ~~~~v~cic~~~~~~~~~~g~~v~c~~c~---~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-C 485 (1207)
.++.+.|+|+.... |.+|+||.|+ .|.|..||+.... ..+.|+|+. |
T Consensus 23 ~~~~~yCiC~~~~~-----g~MI~CD~c~C~~eWfH~~CVgl~~~------------------------p~~~W~Cp~cC 73 (90)
T 2jmi_A 23 NQEEVYCFCRNVSY-----GPMVACDNPACPFEWFHYGCVGLKQA------------------------PKGKWYCSKDC 73 (90)
T ss_dssp -CCSCCSTTTCCCS-----SSEECCCSSSCSCSCEETTTSSCSSC------------------------TTSCCCSSHHH
T ss_pred CCCCcEEEeCCCCC-----CCEEEecCCCCccccCcCccCCCCcC------------------------CCCCccCChhh
Confidence 34567899987532 5799999988 9999999985432 246899999 9
Q ss_pred hhhhh
Q 000967 486 DELIE 490 (1207)
Q Consensus 486 ~~~~~ 490 (1207)
.....
T Consensus 74 ~~~~k 78 (90)
T 2jmi_A 74 KEIAN 78 (90)
T ss_dssp HHHHH
T ss_pred cchhh
Confidence 86544
No 102
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=92.46 E-value=0.02 Score=59.23 Aligned_cols=54 Identities=26% Similarity=0.679 Sum_probs=39.3
Q ss_pred hhhhhhcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~ 489 (1207)
..+.|+|+...+ -.|.||+|+.|..|.|..|+|..... ....+.|+|+.|....
T Consensus 7 ~~~~C~C~~~~~---~~~~mi~Cd~C~~WfH~~Cv~~~~~~---------------------~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYCICKTPED---ESKFYIGCDRCQNWYHGRCVGILQSE---------------------AELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEETTTTEECC---TTSCEEECTTTCCEEEHHHHTCCHHH---------------------HTTCSSCCCHHHHHHH
T ss_pred CCcEeeCCCCCC---CCCCEeECCCCCchhChhhcCCchhh---------------------ccCccCeecCCCcchh
Confidence 346789987643 24679999999999999999854310 1135789999998643
No 103
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.13 E-value=0.076 Score=49.22 Aligned_cols=47 Identities=36% Similarity=0.914 Sum_probs=36.2
Q ss_pred hhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~--c~-~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
+...|+|+... .|.+|+|+. |. .|.|..||+.... ..+.|+|+.|..
T Consensus 35 e~~yCiC~~~~-----~g~MI~CD~~dC~~~WfH~~CVgl~~~------------------------p~g~W~Cp~C~~ 84 (91)
T 1weu_A 35 EPTYCLCHQVS-----YGEMIGCDNPDCSIEWFHFACVGLTTK------------------------PRGKWFCPRCSQ 84 (91)
T ss_dssp CCBCSTTCCBC-----CSCCCCCSCSSCSCCCCCSTTTTCSSC------------------------CCSSCCCTTTCC
T ss_pred CCcEEECCCCC-----CCCEeEecCCCCCCCCEecccCCcCcC------------------------CCCCEECcCccC
Confidence 45679998764 278999999 65 7999999985432 246899999965
No 104
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.87 E-value=1.2 Score=56.55 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=29.2
Q ss_pred ccccccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCC
Q 000967 594 LTRIFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 594 L~~i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN 639 (1207)
+....|+.||+|||..+-.+. ..+..+....+++|-|=|-|-
T Consensus 511 l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 511 LAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp TTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 445679999999997764332 223334456789999999883
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=91.62 E-value=0.087 Score=46.58 Aligned_cols=47 Identities=36% Similarity=0.914 Sum_probs=36.1
Q ss_pred hhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~--c~-~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
+...|+|+... .|.+|+|+. |. .|-|..||+.... ..+.|+|+.|..
T Consensus 15 ~~~~C~C~~~~-----~g~MI~CD~~~C~~~wfH~~Cvgl~~~------------------------p~g~w~Cp~C~~ 64 (71)
T 1wen_A 15 EPTYCLCHQVS-----YGEMIGCDNPDCSIEWFHFACVGLTTK------------------------PRGKWFCPRCSQ 64 (71)
T ss_dssp SCCCSTTCCCS-----CSSEECCSCSSCSCCCEETTTTTCSSC------------------------CSSCCCCTTTSS
T ss_pred CCCEEECCCCC-----CCCEeEeeCCCCCCccEecccCCcCcC------------------------CCCCEECCCCCc
Confidence 45678998754 278999999 76 7999999985432 247899999975
No 106
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=90.99 E-value=0.067 Score=55.89 Aligned_cols=33 Identities=30% Similarity=0.845 Sum_probs=26.4
Q ss_pred hcccccccccccccccccccccccccccccCcC
Q 000967 417 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYS 449 (1207)
Q Consensus 417 ic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~ 449 (1207)
+|+..-....+.+.||+|+.|..|-|+.|+|-.
T Consensus 7 iC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~ 39 (183)
T 3lqh_A 7 LCDKCYDDDDYESKMMQCGKCDRWVHSKCENLS 39 (183)
T ss_dssp TTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCC
T ss_pred CCcCccCCcccCCCeEECCCCCcccchhccccC
Confidence 477665555556779999999999999999753
No 107
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=90.53 E-value=0.076 Score=45.71 Aligned_cols=47 Identities=32% Similarity=0.724 Sum_probs=35.9
Q ss_pred hhhhhhccccccccccccccccccccc---ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDICD---AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~c~---~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
+.+.|+|+..+ .|.+|+|+.|+ .|-|..||+.... ..+.|+|+.|..
T Consensus 10 e~~yC~C~~~~-----~g~MI~CD~c~C~~~WfH~~Cvgl~~~------------------------p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYCLCNQVS-----YGEMIGCDNEQCPIEWFHFSCVSLTYK------------------------PKGKWYCPKCRG 59 (62)
T ss_dssp CCEETTTTEEC-----CSEEEECSCTTCSSCEEETGGGTCSSC------------------------CSSCCCCHHHHT
T ss_pred CCcEEECCCCC-----CCCeeeeeCCCCCcccEecccCCcCcC------------------------CCCCEECcCccc
Confidence 45678998753 26799999955 9999999986432 247899999964
No 108
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=90.34 E-value=0.079 Score=45.13 Aligned_cols=47 Identities=34% Similarity=0.842 Sum_probs=35.7
Q ss_pred hhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~--c~-~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
+.+.|+|+... .|.+|+|+. |. .|-|..||+.... ..+.|+|+.|..
T Consensus 8 e~~yC~C~~~~-----~g~mi~CD~~~C~~~wfH~~Cvgl~~~------------------------p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYCLCHQVS-----YGEMIGCDNPDCPIEWFHFACVDLTTK------------------------PKGKWFCPRCVQ 57 (59)
T ss_dssp CCEETTTTEEC-----CSEEEECSCTTCSSCEEETGGGTCSSC------------------------CSSCCCCHHHHC
T ss_pred CCcEEECCCCC-----CCCeeEeeCCCCCCCCEecccCCcccC------------------------CCCCEECcCccC
Confidence 45678998653 378999999 66 6999999985442 246899999963
No 109
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.28 E-value=1.2 Score=56.71 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=27.4
Q ss_pred ccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCC
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN 639 (1207)
.|+.||+|||+.+-.+. ..+..+....+++|-|=|-|-
T Consensus 517 ~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 517 KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCcccc
Confidence 89999999998874332 223334456789999999873
No 110
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=90.18 E-value=0.019 Score=49.92 Aligned_cols=33 Identities=24% Similarity=0.665 Sum_probs=23.9
Q ss_pred cccccccccccccccccc-cccccccccccCcCC
Q 000967 418 CGAVSESRKYKGLWVQCD-ICDAWQHADCVGYSP 450 (1207)
Q Consensus 418 c~~~~~~~~~~g~~v~c~-~c~~wqh~~cv~~~~ 450 (1207)
|+.-..+..-...||+|+ .|..|-|..|||...
T Consensus 11 C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~ 44 (65)
T 2vpb_A 11 CGICTNEVNDDQDAILCEASCQKWFHRICTGMTE 44 (65)
T ss_dssp CTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCH
T ss_pred CccCCCccCCCCCeEecccCccccCchhccCCCH
Confidence 333333333346799999 999999999998654
No 111
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=87.93 E-value=0.18 Score=43.06 Aligned_cols=47 Identities=36% Similarity=0.914 Sum_probs=35.6
Q ss_pred hhhhhhccccccccccccccccccc--cc-ccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 412 ERVECICGAVSESRKYKGLWVQCDI--CD-AWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 412 ~~v~cic~~~~~~~~~~g~~v~c~~--c~-~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
+...|+|+... .|..|+|+. |. .|-|..||+.... ..+.|+|+.|..
T Consensus 9 e~~~C~C~~~~-----~g~mi~CD~cdC~~~wfH~~Cvgl~~~------------------------p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYCLCHQVS-----YGEMIGCDNPDCSIEWFHFACVGLTTK------------------------PRGKWFCPRCSQ 58 (60)
T ss_dssp CCEETTTTEEC-----CSEEEECSCTTCSSCEEETGGGTCSSC------------------------CSSCCCCHHHHC
T ss_pred CCCEEECCCcC-----CCCEEEeCCCCCCCceEehhcCCCCcC------------------------CCCCEECcCccC
Confidence 45678998753 278999999 55 8999999985432 247899999964
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.85 E-value=1.6 Score=53.26 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=30.7
Q ss_pred cccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCC
Q 000967 597 IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN 639 (1207)
..++.||+||||++-. ......+..+....++++.|-|-|.
T Consensus 278 ~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp CSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEEECTTSC
T ss_pred ccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEEeccccc
Confidence 3678999999999953 2333444456677899999999884
No 113
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=86.88 E-value=0.19 Score=60.07 Aligned_cols=41 Identities=24% Similarity=0.565 Sum_probs=31.4
Q ss_pred ccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhh
Q 000967 427 YKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDEL 488 (1207)
Q Consensus 427 ~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~ 488 (1207)
....||+||.|+.|.|..|||..... +.....|+||.|...
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi~~~~---------------------a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGLEQFE---------------------YYLYEKFFCPKCVPH 94 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTCCGGG---------------------TTTEEECCCTTTHHH
T ss_pred cCCCEEECCCCCcCCCCcCCCCChhH---------------------hcCCCeEECcCCcCC
Confidence 34579999999999999999875421 112468999999864
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=86.42 E-value=3.4 Score=44.29 Aligned_cols=36 Identities=25% Similarity=0.097 Sum_probs=24.7
Q ss_pred cccceeeccCccccCChhHHHHHHHHHh-ccCeEEEEecc
Q 000967 597 IFWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 635 (1207)
Q Consensus 597 i~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGT 635 (1207)
-.++.||+||+|.+... ....+..| +..-.++++|-
T Consensus 88 ~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp TTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 35789999999998643 33344443 23668899996
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=85.26 E-value=3.6 Score=43.92 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=24.6
Q ss_pred ccceeeccCccccCChhHHHHHHHHHh-ccCeEEEEecc
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 635 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGT 635 (1207)
.++.|+|||||.+.... . ..+..| .....+++||-
T Consensus 101 ~~dvViIDEaQF~~~~~--V-~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDI--V-EVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTTH--H-HHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCHHH--H-HHHHHHhhCCCEEEEEec
Confidence 47899999999985332 2 445553 34668888886
No 116
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=80.81 E-value=5.7 Score=46.85 Aligned_cols=40 Identities=13% Similarity=-0.081 Sum_probs=28.4
Q ss_pred ccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCC
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN 639 (1207)
.++.||+||+|++- .......+..+....++++.|=|-|-
T Consensus 128 ~~~~iiiDE~~~~~--~~~~~~l~~~~~~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 128 KCRVLICDEVSMYD--RKLFKILLSTIPPWCTIIGIGDNKQI 167 (459)
T ss_dssp SCSEEEESCGGGCC--HHHHHHHHHHSCTTCEEEEEECTTSC
T ss_pred CCCEEEEECchhCC--HHHHHHHHHhccCCCEEEEECCHHHc
Confidence 57899999999984 22333333345567899999998883
No 117
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=78.61 E-value=7.7 Score=40.43 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=31.7
Q ss_pred ccceeeccCccccCChhHHHHHHHHHh-ccCeEEEEecc--CCC----CChhhhHhhhhcc
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT--PIQ----RKLDDLYGLLRFL 651 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGT--PIq----N~l~DL~sLL~FL 651 (1207)
.++.||+||||.+... ....+..| .....++++|- .++ +...+|..+.+.+
T Consensus 81 ~~dvViIDEaqfl~~~---~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V 138 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDE---IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFV 138 (191)
T ss_dssp TCSEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred cCCEEEEECCCCCCHH---HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccE
Confidence 4799999999998532 24445553 34557888885 233 3455566655544
No 118
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=78.13 E-value=0.6 Score=45.40 Aligned_cols=19 Identities=42% Similarity=1.067 Sum_probs=17.1
Q ss_pred ccccccccccccccccCcC
Q 000967 431 WVQCDICDAWQHADCVGYS 449 (1207)
Q Consensus 431 ~v~c~~c~~wqh~~cv~~~ 449 (1207)
.|+|+.|+.|.|..|++..
T Consensus 2 mi~c~~c~~w~H~~c~~~~ 20 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLS 20 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCC
T ss_pred ccccccCCCccCCcccccC
Confidence 5899999999999999754
No 119
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=65.86 E-value=3.1 Score=42.19 Aligned_cols=83 Identities=6% Similarity=-0.064 Sum_probs=52.8
Q ss_pred chHHHHHhHHHHHHHHHHHhhhhH---HHHHHH--HHHHHHHHhhccCCCC-----------------cceeEEecCCCC
Q 000967 823 RKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTEI 880 (1207)
Q Consensus 823 rkvLifsq~la~L~iLe~~l~~a~---~~y~~~--l~~~~e~~~~fr~D~~-----------------~~lh~~~Nl~dw 880 (1207)
.+++||++.....+.+...+.... ..|.+. ...++...+.|+.... ....+.|++ .|
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~-p~ 110 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM-PE 110 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC-CS
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC-CC
Confidence 689999999999988888775531 112211 2344455555554332 222444554 59
Q ss_pred Cccchhhhh-hhhccCCCCceEEEEcccC
Q 000967 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKI 908 (1207)
Q Consensus 881 npa~d~QA~-R~~riGQ~~~v~vyRl~t~ 908 (1207)
++..-.|+. |++|.||+- .++-+++.
T Consensus 111 ~~~~~~qr~GR~~R~g~~g--~~~~~~~~ 137 (172)
T 1t5i_A 111 DSDTYLHRVARAGRFGTKG--LAITFVSD 137 (172)
T ss_dssp SHHHHHHHHHHHTGGGCCC--EEEEEECS
T ss_pred CHHHHHHHhcccccCCCCc--EEEEEEcC
Confidence 999999999 999999864 44545543
No 120
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=69.31 E-value=1.3 Score=44.87 Aligned_cols=83 Identities=5% Similarity=-0.039 Sum_probs=52.8
Q ss_pred chHHHHHhHHHHHHHHHHHhhhh---HHHHHHHH--HHHHHHHhhccCCCCc-----------------ceeEEecCCCC
Q 000967 823 RKLVMALNGLAGIALIEKNLSQA---VSLYKEAM--AVVEEHSEDFRLDPLL-----------------NIHLHHNLTEI 880 (1207)
Q Consensus 823 rkvLifsq~la~L~iLe~~l~~a---~~~y~~~l--~~~~e~~~~fr~D~~~-----------------~lh~~~Nl~dw 880 (1207)
.+++||++.....+.+...+... +..+.+.+ ..+++..+.|+.+... ...+.+++ .|
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~-p~ 109 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDM-PR 109 (170)
Confidence 68999999998888888776543 22333332 2445555566544432 12334444 59
Q ss_pred Cccchhhhh-hhhccCCCCceEEEEcccC
Q 000967 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKI 908 (1207)
Q Consensus 881 npa~d~QA~-R~~riGQ~~~v~vyRl~t~ 908 (1207)
++..-.|+. |++|.||+..+ +-+++.
T Consensus 110 ~~~~~~qr~GR~~R~g~~g~~--~~~~~~ 136 (170)
T 2yjt_D 110 SGDTYLHRIGRTARAGRKGTA--ISLVEA 136 (170)
Confidence 999999999 99999986544 444443
No 121
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=64.60 E-value=3.4 Score=41.28 Aligned_cols=84 Identities=6% Similarity=0.015 Sum_probs=53.3
Q ss_pred cchHHHHHhHHHHHHHHHHHhhhhH---HHHHHH--HHHHHHHHhhccCCCC-----------------cceeEEecCCC
Q 000967 822 LRKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTE 879 (1207)
Q Consensus 822 ~rkvLifsq~la~L~iLe~~l~~a~---~~y~~~--l~~~~e~~~~fr~D~~-----------------~~lh~~~Nl~d 879 (1207)
..++|||++.....+.+...+.... ..+.+. ...++...+.|+.+.. ....+.|++ .
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~-p 113 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL-P 113 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC-C
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC-C
Confidence 3689999999999888888775431 112211 2344445555554432 222444554 5
Q ss_pred CCccchhhhh-hhhccCCCCceEEEEcccC
Q 000967 880 ILPMVANCAT-ELSQNEQHFPGCSEKAFKI 908 (1207)
Q Consensus 880 wnpa~d~QA~-R~~riGQ~~~v~vyRl~t~ 908 (1207)
|++..-.|+. |++|.||+ ..++.+++.
T Consensus 114 ~~~~~~~qr~GR~~R~g~~--g~~~~~~~~ 141 (163)
T 2hjv_A 114 LEKESYVHRTGRTGRAGNK--GKAISFVTA 141 (163)
T ss_dssp SSHHHHHHHTTTSSCTTCC--EEEEEEECG
T ss_pred CCHHHHHHhccccCcCCCC--ceEEEEecH
Confidence 9999999999 99999986 445555654
No 122
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=63.44 E-value=21 Score=44.85 Aligned_cols=104 Identities=8% Similarity=-0.003 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhhhHHH---HHHHHHHHHHH--Hhhcc------------
Q 000967 802 SMDEILMVLIGKTKIEGEEALRKLVMALNGLAGIALIEKNLSQAVSL---YKEAMAVVEEH--SEDFR------------ 864 (1207)
Q Consensus 802 t~eelL~~Ll~k~~~e~eea~rkvLifsq~la~L~iLe~~l~~a~~~---y~~~l~~~~e~--~~~fr------------ 864 (1207)
+..+-...++..+. ++.+..+.+|||++.....+.|.+.|...... +..-...++.. ...++
T Consensus 455 t~~eK~~al~~~I~-~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATdmAg 533 (822)
T 3jux_A 455 TQKEKYEKIVEEIE-KRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAG 533 (822)
T ss_dssp SHHHHHHHHHHHHH-HHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTT
T ss_pred cHHHHHHHHHHHHH-HHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcchhh
Confidence 55555555554443 22334589999999999999998877654211 10001111111 01111
Q ss_pred --CCCC--------cceeEEecCCCCCccchhhhh-hhhccCCCCceEEEEcccC
Q 000967 865 --LDPL--------LNIHLHHNLTEILPMVANCAT-ELSQNEQHFPGCSEKAFKI 908 (1207)
Q Consensus 865 --~D~~--------~~lh~~~Nl~dwnpa~d~QA~-R~~riGQ~~~v~vyRl~t~ 908 (1207)
+|-- .-+|++..-..-++..+.|.. |+-|-|++ +...-+++.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~--G~a~~fvsl 586 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDP--GESIFFLSL 586 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCC--CEEEEEEET
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCC--eeEEEEech
Confidence 1111 123554444446778899999 99998874 444444443
No 123
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=62.59 E-value=3.7 Score=42.19 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=52.9
Q ss_pred cchHHHHHhHHHHHHHHHHHhhhhH---HHHHHHH--HHHHHHHhhccCCCC-----------------cceeEEecCCC
Q 000967 822 LRKLVMALNGLAGIALIEKNLSQAV---SLYKEAM--AVVEEHSEDFRLDPL-----------------LNIHLHHNLTE 879 (1207)
Q Consensus 822 ~rkvLifsq~la~L~iLe~~l~~a~---~~y~~~l--~~~~e~~~~fr~D~~-----------------~~lh~~~Nl~d 879 (1207)
..++|||++.....+.+...+.... ..+.+.+ ..+++..+.|+.... ....+.|++ .
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~-p 124 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL-P 124 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSC-C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCC-C
Confidence 4789999999999998888775431 1222222 234444444443332 222445554 4
Q ss_pred CCccchhhhh-hhhccCCCCceEEEEcccCC
Q 000967 880 ILPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1207)
Q Consensus 880 wnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~ 909 (1207)
|++..-.|+. |+.|.||+ +.++.+++..
T Consensus 125 ~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 153 (185)
T 2jgn_A 125 SDIEEYVHRIGRTGRVGNL--GLATSFFNER 153 (185)
T ss_dssp SSHHHHHHHHTTBCCTTSC--EEEEEEECGG
T ss_pred CCHHHHHHHccccCCCCCC--cEEEEEEchh
Confidence 9999999999 99999975 5666667654
No 124
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=59.68 E-value=2.8 Score=43.42 Aligned_cols=84 Identities=7% Similarity=-0.075 Sum_probs=50.8
Q ss_pred chHHHHHhHHHHHHHHHHHhhhhH---HHHHHH--HHHHHHHHhhccCCCC-----------------cceeEEecCCCC
Q 000967 823 RKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTEI 880 (1207)
Q Consensus 823 rkvLifsq~la~L~iLe~~l~~a~---~~y~~~--l~~~~e~~~~fr~D~~-----------------~~lh~~~Nl~dw 880 (1207)
.++|||++.....+.+...+.... ..+.+. ...+++..+.|+.+.. ....+.|++. |
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p-~ 133 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMP-E 133 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCC-S
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCC-C
Confidence 589999999999988888775431 111111 2234444455543332 2335555554 9
Q ss_pred Cccchhhhh-hhhccCCCCceEEEEcccCC
Q 000967 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1207)
Q Consensus 881 npa~d~QA~-R~~riGQ~~~v~vyRl~t~~ 909 (1207)
++....|+. |+.|.||+- .++.+++..
T Consensus 134 ~~~~~~qr~GR~gR~g~~g--~~i~l~~~~ 161 (191)
T 2p6n_A 134 EIENYVHRIGRTGCSGNTG--IATTFINKA 161 (191)
T ss_dssp SHHHHHHHHTTSCC---CC--EEEEEECTT
T ss_pred CHHHHHHHhCccccCCCCc--EEEEEEcCc
Confidence 999999999 999999864 455566653
No 125
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=54.86 E-value=5.9 Score=39.56 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=50.4
Q ss_pred cchHHHHHhHHHHHHHHHHHhhhhH---HHHHHH--HHHHHHHHhhccCCCC-----------------cceeEEecCCC
Q 000967 822 LRKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTE 879 (1207)
Q Consensus 822 ~rkvLifsq~la~L~iLe~~l~~a~---~~y~~~--l~~~~e~~~~fr~D~~-----------------~~lh~~~Nl~d 879 (1207)
..+++||++.....+.+...+.... ..+.+. ...++...+.|+.... ....+.|++ .
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~-p 108 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL-P 108 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSC-C
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCC-C
Confidence 3689999999998888888776531 111111 2234444555554332 222344444 5
Q ss_pred CCccchhhhh-hhhccCCCCceEEEEcccCCc
Q 000967 880 ILPMVANCAT-ELSQNEQHFPGCSEKAFKIHS 910 (1207)
Q Consensus 880 wnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~t 910 (1207)
|++..-.|+. |+.|.||+ ..++.+++...
T Consensus 109 ~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 138 (165)
T 1fuk_A 109 ANKENYIHRIGRGGRFGRK--GVAINFVTNED 138 (165)
T ss_dssp SSGGGGGGSSCSCC-------CEEEEEEETTT
T ss_pred CCHHHHHHHhcccccCCCC--ceEEEEEcchH
Confidence 9999999999 99999965 45666777653
No 126
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=52.96 E-value=4.8 Score=41.60 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=23.3
Q ss_pred hhhhcccccccccccccccccccccccccccccCcCC
Q 000967 414 VECICGAVSESRKYKGLWVQCDICDAWQHADCVGYSP 450 (1207)
Q Consensus 414 v~cic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~ 450 (1207)
..|.||...+ +.-..+||..|..|-|..|+.+..
T Consensus 6 ~yCYCG~~~~---~~~~mLqC~~C~qWFH~~Cl~~~~ 39 (177)
T 3rsn_A 6 GSVDEENGRQ---LGEVELQCGICTKWFTADTFGIDT 39 (177)
T ss_dssp -----CTTCC---TTSCEEECTTTCCEEEGGGGTCCC
T ss_pred eEEEcCCCCC---CCceeEeeccccceecHHHhcccc
Confidence 4688887654 455689999999999999997543
No 127
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=52.30 E-value=15 Score=43.27 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=65.8
Q ss_pred cEEEEeCCchHHHHHH---HHHhcC-----CCCCCeEEEEcCCCccccccccchhhhhc-cCCcEEEEehHHHhhhcccC
Q 000967 500 ATLIVCPAPILAQWDA---EITRHT-----RPGSLKTCIYEGARNSSLSDTSIMDISEL-VGADIVLTTYDVLKEDLSHD 570 (1207)
Q Consensus 500 ~tLIV~P~SLl~QW~~---Ei~k~~-----~~g~L~V~vy~G~~~~~~~~~~~~~~~~l-~~~DVVITTYetL~~d~~~~ 570 (1207)
..++|+..+.+.+=.. .+++.+ .....++.++.|..-.+.... ....+ ...++|+|.-..++.++...
T Consensus 127 ~~~~v~~~t~l~~~~~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~---I~~~~~~~~~lVlTpT~~aa~~l~~k 203 (446)
T 3vkw_A 127 RRVAVSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKE---ILSRVNFEEDLILVPGRQAAEMIRRR 203 (446)
T ss_dssp EEEEEEGGGSCCHHHHHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHH---HHHHCCTTTCEEEESCHHHHHHHHHH
T ss_pred cEEEEECCchhhccHHHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHH---HHHHhccCCeEEEeCCHHHHHHHHHH
Confidence 4779999887654222 222331 112567888887654432110 01111 14667887777777665321
Q ss_pred CCCcccchhhhhhcccCCCccccccc------cccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCC
Q 000967 571 SDRHEGDRRFMRFQKRYPVIPTLLTR------IFWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQR 639 (1207)
Q Consensus 571 ~~~~~~~~~~~r~~kry~~~~s~L~~------i~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN 639 (1207)
.... +.... ...+.....+.|.. ...+.||+||+.++-. ......+..+++ .++++.|=|-|=
T Consensus 204 l~~~-~~~~~--~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~--~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 204 ANAS-GIIVA--TKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHT--GCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp HTTT-SCCCC--CTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCH--HHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred hhhc-Ccccc--ccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCH--HHHHHHHHhCCC-CEEEEecCcccc
Confidence 1100 00000 00000011122222 3479999999999842 233333344445 899999998773
No 128
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=52.13 E-value=82 Score=35.08 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=17.4
Q ss_pred cceeecCCCcchHHHHHHHHHH
Q 000967 359 GGILADEMGLGKTVELLACIFA 380 (1207)
Q Consensus 359 GGILADEMGLGKTvq~LALIl~ 380 (1207)
+-+|.-+.|.|||..+.++...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCchHHHHHHHHHHH
Confidence 3466778899999998887754
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=48.38 E-value=12 Score=38.44 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=24.3
Q ss_pred ccceeeccCccccCChhHHHHHHHHHh-ccCeEEEEecc
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 635 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGT 635 (1207)
.++.||+||+|.+... ....+..+ .....+++||.
T Consensus 76 ~~dvviIDE~Q~~~~~---~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS---LFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHHHCCCCEEEEee
Confidence 4789999999998322 33444433 34678999998
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=43.26 E-value=16 Score=39.98 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=16.8
Q ss_pred cceeecCCCcchHHHHHHHHH
Q 000967 359 GGILADEMGLGKTVELLACIF 379 (1207)
Q Consensus 359 GGILADEMGLGKTvq~LALIl 379 (1207)
+-+|.-+.|.|||..+-++..
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 457888999999998776653
No 131
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=42.36 E-value=54 Score=40.58 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=25.3
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYE 532 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~ 532 (1207)
+|+|||+|.. +..||.+|+..|++ .-.|..|.
T Consensus 54 ~~~lvv~~~~~~A~ql~~el~~~~~--~~~V~~fp 86 (664)
T 1c4o_A 54 RPALVLAPNKILAAQLAAEFRELFP--ENAVEYFI 86 (664)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCT--TSEEEECC
T ss_pred CCEEEEecCHHHHHHHHHHHHHHCC--CCeEEEcC
Confidence 5899999986 66899999999997 34555544
No 132
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=35.67 E-value=12 Score=35.56 Aligned_cols=27 Identities=19% Similarity=0.609 Sum_probs=21.6
Q ss_pred cccccccccccccccccccccccCcCC
Q 000967 424 SRKYKGLWVQCDICDAWQHADCVGYSP 450 (1207)
Q Consensus 424 ~~~~~g~~v~c~~c~~wqh~~cv~~~~ 450 (1207)
...+...+++|+.|+.|.|..|+++..
T Consensus 68 ~~~~~~~m~~C~~C~~~~H~~C~~~~~ 94 (117)
T 4bbq_A 68 TQDFEKKLMECCICNEIVHPGCLQMDG 94 (117)
T ss_dssp HCCGGGSCEEETTTCCEECGGGCCSCC
T ss_pred ccccCcceEEeeecCCeEECCCCCCCc
Confidence 344555689999999999999998654
No 133
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=34.63 E-value=15 Score=40.56 Aligned_cols=84 Identities=8% Similarity=-0.059 Sum_probs=48.0
Q ss_pred chHHHHHhHHHHHHHHHHHhhhhH---HHHHH--HHHHHHHHHhhccCCCC-----------------cceeEEecCCCC
Q 000967 823 RKLVMALNGLAGIALIEKNLSQAV---SLYKE--AMAVVEEHSEDFRLDPL-----------------LNIHLHHNLTEI 880 (1207)
Q Consensus 823 rkvLifsq~la~L~iLe~~l~~a~---~~y~~--~l~~~~e~~~~fr~D~~-----------------~~lh~~~Nl~dw 880 (1207)
.+++||++.......+.+.+.... ..+.+ ....+++..+.|+.+.. ....+.+.+ .|
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~-~~ 317 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL-PQ 317 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC-CS
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC-CC
Confidence 567777777777777766664421 11111 11233344444443332 122334444 58
Q ss_pred Cccchhhhh-hhhccCCCCceEEEEcccCC
Q 000967 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1207)
Q Consensus 881 npa~d~QA~-R~~riGQ~~~v~vyRl~t~~ 909 (1207)
++..-.|+. ||+|.|++. .++.+++..
T Consensus 318 s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~ 345 (367)
T 1hv8_A 318 NPESYMHRIGRTGRAGKKG--KAISIINRR 345 (367)
T ss_dssp CHHHHHHHSTTTCCSSSCC--EEEEEECTT
T ss_pred CHHHhhhcccccccCCCcc--EEEEEEcHH
Confidence 999999999 999999765 445556554
No 134
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=33.79 E-value=24 Score=29.60 Aligned_cols=39 Identities=28% Similarity=0.714 Sum_probs=29.1
Q ss_pred ccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchhhh
Q 000967 429 GLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDELI 489 (1207)
Q Consensus 429 g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~ 489 (1207)
|..+.|+.|..|-|..|++..... ...+.++|+.|....
T Consensus 15 g~ll~Cd~C~~~fH~~Cl~ppl~~----------------------~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 15 GQLLMCDTCSRVYHLDCLDPPLKT----------------------IPKGMWICPRCQDQM 53 (60)
T ss_dssp SSCEECSSSSCEECGGGSSSCCSS----------------------CCCSCCCCHHHHHHH
T ss_pred CcEEEcCCCCcCEECCcCCCCcCC----------------------CCCCceEChhccChh
Confidence 578999999999999998732210 135688999997644
No 135
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=32.15 E-value=22 Score=37.17 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=53.6
Q ss_pred cchHHHHHhHHHHHHHHHHHhhhhH---HHHHHH--HHHHHHHHhhccCCCC-----------------cceeEEecCCC
Q 000967 822 LRKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPL-----------------LNIHLHHNLTE 879 (1207)
Q Consensus 822 ~rkvLifsq~la~L~iLe~~l~~a~---~~y~~~--l~~~~e~~~~fr~D~~-----------------~~lh~~~Nl~d 879 (1207)
..++|||++.....+.+...+.... ..+.+. ...++...+.|+.+.. ....+.|++ .
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~-p 109 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRL-P 109 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSC-C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCC-C
Confidence 4799999999999888887765431 111111 2244455555554432 122444444 4
Q ss_pred CCccchhhhh-hhhccCCCCceEEEEcccCC
Q 000967 880 ILPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1207)
Q Consensus 880 wnpa~d~QA~-R~~riGQ~~~v~vyRl~t~~ 909 (1207)
|++..-.|.. |+.|.|+. +.++.+++..
T Consensus 110 ~~~~~~~qr~GR~gR~g~~--g~~~~l~~~~ 138 (212)
T 3eaq_A 110 DRAEAYQHRSGRTGRAGRG--GRVVLLYGPR 138 (212)
T ss_dssp SSHHHHHHHHTTBCCCC----BEEEEEECGG
T ss_pred cCHHHHHHHhcccCCCCCC--CeEEEEEchh
Confidence 8999999999 99999965 6778788764
No 136
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=31.38 E-value=1.1e+02 Score=37.79 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=25.4
Q ss_pred CcEEEEeCCc-hHHHHHHHHHhcCCCCCCeEEEEc
Q 000967 499 GATLIVCPAP-ILAQWDAEITRHTRPGSLKTCIYE 532 (1207)
Q Consensus 499 ~~tLIV~P~S-Ll~QW~~Ei~k~~~~g~L~V~vy~ 532 (1207)
+|+|||+|.. ...||..|+..|++ .-.|..|.
T Consensus 58 ~~~lvv~~~~~~A~~l~~el~~~~~--~~~v~~fp 90 (661)
T 2d7d_A 58 KPTLVIAHNKTLAGQLYSEFKEFFP--NNAVEYFV 90 (661)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHCT--TSEEEEEC
T ss_pred CCEEEEECCHHHHHHHHHHHHHHcC--CCcEEEcc
Confidence 4899999986 56899999999997 34565554
No 137
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=28.39 E-value=50 Score=38.14 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=36.5
Q ss_pred cccccccceeeccCccccCChhHHHHHHHH-Hhc--cCeEEEEeccCCCCChhhhHhhhhc
Q 000967 593 LLTRIFWWRICLDEAQMVESNAAAATEMAL-RLY--AKHRWCITGTPIQRKLDDLYGLLRF 650 (1207)
Q Consensus 593 ~L~~i~w~rVILDEAH~IKN~~Sk~~kal~-~L~--a~~RwlLTGTPIqN~l~DL~sLL~F 650 (1207)
.+.....+.+|+||+|.+++.. ....++. .+. ...++++++||-..+ -+|.+..-
T Consensus 268 slrG~~~~~viiDE~a~~~~~~-el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 268 AVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp HHHTSCCSEEEEESGGGSTTHH-HHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHH
T ss_pred CccCCCCCEEEechhhhcCCCH-HHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHH
Confidence 3556677899999999999732 3334443 333 357899999997653 55555443
No 138
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.64 E-value=32 Score=31.60 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=32.4
Q ss_pred hcccccccccccccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 417 ICGAVSESRKYKGLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 417 ic~~~~~~~~~~g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
+|+...+ .+..|.|+.|..|-|..|++.... ..+.+.++|+.|..
T Consensus 21 vC~~~~~----~~~ll~CD~C~~~~H~~Cl~Ppl~----------------------~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 21 VCSRGDE----DDKLLFCDGCDDNYHIFCLLPPLP----------------------EIPRGIWRCPKCIL 65 (92)
T ss_dssp SSCCSGG----GGGCEECTTTCCEECSSSSSSCCS----------------------SCCSSCCCCHHHHH
T ss_pred cCCCcCC----CCCEEEcCCCCchhccccCCCCcc----------------------cCCCCCcCCccCcC
Confidence 5766543 357899999999999999863211 11357889999975
No 139
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.56 E-value=33 Score=28.35 Aligned_cols=20 Identities=35% Similarity=0.793 Sum_probs=17.9
Q ss_pred ccccccccccccccccccCc
Q 000967 429 GLWVQCDICDAWQHADCVGY 448 (1207)
Q Consensus 429 g~~v~c~~c~~wqh~~cv~~ 448 (1207)
|..+.|+.|..|-|..|++.
T Consensus 19 g~ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 19 GQLLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp SCCEECSSSSCEECSSSSSS
T ss_pred CeEEEcCCCCcceECccCCC
Confidence 57899999999999999873
No 140
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=24.63 E-value=16 Score=41.07 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred chHHHHHhHHHHHHHHHHHhhhh---HHHHHHHH--HHHHHHHhhccCCCCc-----------------ceeEEecCCCC
Q 000967 823 RKLVMALNGLAGIALIEKNLSQA---VSLYKEAM--AVVEEHSEDFRLDPLL-----------------NIHLHHNLTEI 880 (1207)
Q Consensus 823 rkvLifsq~la~L~iLe~~l~~a---~~~y~~~l--~~~~e~~~~fr~D~~~-----------------~lh~~~Nl~dw 880 (1207)
.+++||++.......+.+.+... +..+.+.+ ..+.+..+.|+.+... ...+.+.+ .|
T Consensus 260 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~-p~ 338 (394)
T 1fuu_A 260 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL-PA 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC-CC
Confidence 45666777666666666555432 22222222 1334444444433221 12333333 48
Q ss_pred Cccchhhhh-hhhccCCCCceEEEEcccCC
Q 000967 881 LPMVANCAT-ELSQNEQHFPGCSEKAFKIH 909 (1207)
Q Consensus 881 npa~d~QA~-R~~riGQ~~~v~vyRl~t~~ 909 (1207)
++..-.|+. ||+|.||+ ..++.+++..
T Consensus 339 s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 366 (394)
T 1fuu_A 339 NKENYIHRIGRGGRFGRK--GVAINFVTNE 366 (394)
T ss_dssp ------------------------------
T ss_pred CHHHHHHHcCcccCCCCC--ceEEEEEchh
Confidence 888899999 99999975 4455555554
No 141
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.33 E-value=25 Score=28.37 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=17.1
Q ss_pred ccccccccccccccccccC
Q 000967 429 GLWVQCDICDAWQHADCVG 447 (1207)
Q Consensus 429 g~~v~c~~c~~wqh~~cv~ 447 (1207)
+..+.|+.|..|-|..|+.
T Consensus 13 ~~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 13 DKLILCDECNKAFHLFCLR 31 (51)
T ss_dssp SCCEECTTTCCEECHHHHC
T ss_pred CCEEECCCCChhhCcccCC
Confidence 5689999999999999985
No 142
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=23.73 E-value=49 Score=40.43 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=32.4
Q ss_pred ccceeeccCccccCChhHHHHHHHHHhccCeEEEEeccCCCCCh
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRLYAKHRWCITGTPIQRKL 641 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L~a~~RwlLTGTPIqN~l 641 (1207)
.+++||+|||+++. .......+..++...+++|-|=|-|-..
T Consensus 262 ~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~liLvGD~~QL~~ 303 (608)
T 1w36_D 262 HLDVLVVDEASMID--LPMMSRLIDALPDHARVIFLGDRDQLAS 303 (608)
T ss_dssp SCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEEEEECTTSGGG
T ss_pred CCCEEEEechhhCC--HHHHHHHHHhCCCCCEEEEEcchhhcCC
Confidence 68999999999986 2334455666777889999999987544
No 143
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=22.47 E-value=35 Score=25.88 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=23.1
Q ss_pred CCCCCcccccCccccceeccCCCcccCCCCC
Q 000967 322 SPLCMPMDFLDTYSTLFYNPFSGSLSLSPDY 352 (1207)
Q Consensus 322 ~Plw~~~~~~d~~~~~yyn~~tG~is~~~~~ 352 (1207)
.+.|......+ +..+|||..|++-...++.
T Consensus 5 ~~~W~e~~~~~-G~~YYyN~~T~es~We~P~ 34 (37)
T 1e0l_A 5 VSEWTEYKTAD-GKTYYYNNRTLESTWEKPQ 34 (37)
T ss_dssp SCSCEEEECTT-SCEEEEETTTTEEESSCCS
T ss_pred CCCeEEEECCC-CCEEEEECCCCCEEecCCC
Confidence 45688877666 7899999999988776553
No 144
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=22.33 E-value=57 Score=27.87 Aligned_cols=37 Identities=27% Similarity=0.533 Sum_probs=28.1
Q ss_pred ccccccccccccccccccCcCCCCCcccchhhhhhhcccccccccccccCccccccchh
Q 000967 429 GLWVQCDICDAWQHADCVGYSPRGKKRRSTFELKKHTRKKDMTNIVVRDGEHICQWCDE 487 (1207)
Q Consensus 429 g~~v~c~~c~~wqh~~cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~ 487 (1207)
|..+.|+.|..|-|..|++.... ....+.++|+.|..
T Consensus 18 g~ll~CD~C~~~fH~~Cl~ppl~----------------------~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 18 GELICCDGCPRAFHLACLSPPLR----------------------EIPSGTWRCSSCLQ 54 (66)
T ss_dssp SSCEECSSCCCEECTTTSSSCCS----------------------SCCSSCCCCHHHHH
T ss_pred CCEEEcCCCChhhcccccCCCcC----------------------cCCCCCeECccccC
Confidence 56899999999999999873211 01357899999975
No 145
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=22.07 E-value=23 Score=35.46 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=44.7
Q ss_pred chHHHHHhHHHHHHHHHHHhhhhH---HHHHHH--HHHHHHHHhhccCCCCc---------------ce--eEEecCCCC
Q 000967 823 RKLVMALNGLAGIALIEKNLSQAV---SLYKEA--MAVVEEHSEDFRLDPLL---------------NI--HLHHNLTEI 880 (1207)
Q Consensus 823 rkvLifsq~la~L~iLe~~l~~a~---~~y~~~--l~~~~e~~~~fr~D~~~---------------~l--h~~~Nl~dw 880 (1207)
.++|||++.......+...+.... ..+.+. ...+....+.|+.+... .+ .+.|++ .|
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~-p~ 113 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL-PV 113 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSC-CC
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCC-CC
Confidence 588999999988888887775431 111111 22344455555543321 12 333444 45
Q ss_pred Cc------cchhhhh-hhhccCCCCceEEEEcccCCc
Q 000967 881 LP------MVANCAT-ELSQNEQHFPGCSEKAFKIHS 910 (1207)
Q Consensus 881 np------a~d~QA~-R~~riGQ~~~v~vyRl~t~~t 910 (1207)
+| ..-.|.. |+.|.|+ ++.++.+++...
T Consensus 114 ~~~~~~~~~~~~qr~GR~gR~g~--~g~~~~~~~~~~ 148 (175)
T 2rb4_A 114 KQGEEPDYETYLHRIGRTGRFGK--KGLAFNMIEVDE 148 (175)
T ss_dssp --CCSCCHHHHHHHHCBC----C--CEEEEEEECGGG
T ss_pred CccccCCHHHHHHHhcccccCCC--CceEEEEEccch
Confidence 55 4445665 6777664 577888887654
No 146
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.00 E-value=1.2e+02 Score=35.99 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=30.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhhhh-cccc
Q 000967 1061 SISGLTYHIQSSLDQLEASRKTLLDRLLEIDQTMEKPKEEDMDR-MRHC 1108 (1207)
Q Consensus 1061 ~~~gl~~~l~~~l~~l~~~r~~~~~~l~~L~~~~~~p~~~~Ie~-a~~C 1108 (1207)
.|.-|+-.|.++|..|...|..|-+-+.+|.+. +.||.. ...|
T Consensus 118 rIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL-----EvDIdiqirsC 161 (562)
T 3ghg_A 118 RIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL-----EVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhc
Confidence 344577788888888888888888877777664 556665 4555
No 147
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=20.89 E-value=77 Score=34.13 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=23.6
Q ss_pred ccceeeccCccccCChhHHHHHHHHHh-ccCeEEEEecc
Q 000967 598 FWWRICLDEAQMVESNAAAATEMALRL-YAKHRWCITGT 635 (1207)
Q Consensus 598 ~w~rVILDEAH~IKN~~Sk~~kal~~L-~a~~RwlLTGT 635 (1207)
.++.|++||||.+.. ..+.+..+ .....+++||-
T Consensus 90 ~~dvViIDEaQF~~~----v~el~~~l~~~gi~VI~~GL 124 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAAL 124 (234)
T ss_dssp TCSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEECC
T ss_pred cCCEEEEEchhhhhh----HHHHHHHHHhCCCEEEEEec
Confidence 478999999999963 44444443 24557888875
No 148
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=20.84 E-value=34 Score=35.68 Aligned_cols=39 Identities=18% Similarity=-0.031 Sum_probs=24.1
Q ss_pred cceeeccCccccCC---hhHHHHHHHHHhcc----CeEEEEeccCC
Q 000967 599 WWRICLDEAQMVES---NAAAATEMALRLYA----KHRWCITGTPI 637 (1207)
Q Consensus 599 w~rVILDEAH~IKN---~~Sk~~kal~~L~a----~~RwlLTGTPI 637 (1207)
-..||+||||.+-+ ......+.+..+.. ..-++|.|.|.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 34799999999822 22222344555533 23688999984
Done!